BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= batch____
         (66 letters)

Database: uniref50.fasta 
           3,077,464 sequences; 1,040,396,356 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7ZPR6 UPF0370 protein ypfN n=151 Tax=Enterobacteriacea...    90   2e-17
UniRef50_D0ZEZ5 Putative uncharacterized protein n=2 Tax=Edwards...    81   9e-15
UniRef50_D2U230 Putative uncharacterized protein n=1 Tax=Arsenop...    50   2e-05

>UniRef50_A7ZPR6 UPF0370 protein ypfN n=151 Tax=Enterobacteriaceae
          RepID=YPFN_ECO24
          Length = 66

 Score = 90.0 bits (222), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 66/66 (100%), Positives = 66/66 (100%)

Query: 1  MDWLAKYWWILVIVFLVGVLLNVIKDLKRVDHKKFLANKPELPPHRDFNDKWDDDDDWPK 60
          MDWLAKYWWILVIVFLVGVLLNVIKDLKRVDHKKFLANKPELPPHRDFNDKWDDDDDWPK
Sbjct: 1  MDWLAKYWWILVIVFLVGVLLNVIKDLKRVDHKKFLANKPELPPHRDFNDKWDDDDDWPK 60

Query: 61 KDQPKK 66
          KDQPKK
Sbjct: 61 KDQPKK 66


>UniRef50_D0ZEZ5 Putative uncharacterized protein n=2 Tax=Edwardsiella
          RepID=D0ZEZ5_EDWTE
          Length = 71

 Score = 81.2 bits (199), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 34/65 (52%), Positives = 50/65 (76%), Gaps = 2/65 (3%)

Query: 1  MDWLAKYWWILVIVFLVGVLLNVIKDLKRVDHKKFLANKPELPPHRDFNDKWDDDDDWPK 60
          M WLA YWW+++++ L+G++ N IK L RV+ K +L ++P LPPHRD N +W DDDDWP+
Sbjct: 1  MSWLADYWWVILLI-LIGMIWNGIKALMRVNPKHYLDDRPPLPPHRDNNAQW-DDDDWPR 58

Query: 61 KDQPK 65
          +D+ K
Sbjct: 59 QDKDK 63


>UniRef50_D2U230 Putative uncharacterized protein n=1 Tax=Arsenophonus nasoniae
          RepID=D2U230_9ENTR
          Length = 38

 Score = 50.0 bits (118), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/37 (62%), Positives = 33/37 (89%)

Query: 27 LKRVDHKKFLANKPELPPHRDFNDKWDDDDDWPKKDQ 63
          ++++D K+FL NKP+LPPHRDFN+KWDD+DDWP + +
Sbjct: 1  MQKIDPKRFLDNKPKLPPHRDFNNKWDDEDDWPNQKK 37


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_A7ZPR6 UPF0370 protein ypfN n=151 Tax=Enterobacteriacea...    89   4e-17
UniRef50_D0ZEZ5 Putative uncharacterized protein n=2 Tax=Edwards...    81   1e-14
UniRef50_D2U230 Putative uncharacterized protein n=1 Tax=Arsenop...    51   1e-05

Sequences not found previously or not previously below threshold:


CONVERGED!
>UniRef50_A7ZPR6 UPF0370 protein ypfN n=151 Tax=Enterobacteriaceae
          RepID=YPFN_ECO24
          Length = 66

 Score = 89.3 bits (220), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 66/66 (100%), Positives = 66/66 (100%)

Query: 1  MDWLAKYWWILVIVFLVGVLLNVIKDLKRVDHKKFLANKPELPPHRDFNDKWDDDDDWPK 60
          MDWLAKYWWILVIVFLVGVLLNVIKDLKRVDHKKFLANKPELPPHRDFNDKWDDDDDWPK
Sbjct: 1  MDWLAKYWWILVIVFLVGVLLNVIKDLKRVDHKKFLANKPELPPHRDFNDKWDDDDDWPK 60

Query: 61 KDQPKK 66
          KDQPKK
Sbjct: 61 KDQPKK 66


>UniRef50_D0ZEZ5 Putative uncharacterized protein n=2 Tax=Edwardsiella
          RepID=D0ZEZ5_EDWTE
          Length = 71

 Score = 80.8 bits (198), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/65 (52%), Positives = 50/65 (76%), Gaps = 2/65 (3%)

Query: 1  MDWLAKYWWILVIVFLVGVLLNVIKDLKRVDHKKFLANKPELPPHRDFNDKWDDDDDWPK 60
          M WLA YWW+++++ L+G++ N IK L RV+ K +L ++P LPPHRD N +W DDDDWP+
Sbjct: 1  MSWLADYWWVILLI-LIGMIWNGIKALMRVNPKHYLDDRPPLPPHRDNNAQW-DDDDWPR 58

Query: 61 KDQPK 65
          +D+ K
Sbjct: 59 QDKDK 63


>UniRef50_D2U230 Putative uncharacterized protein n=1 Tax=Arsenophonus nasoniae
          RepID=D2U230_9ENTR
          Length = 38

 Score = 50.7 bits (120), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/37 (62%), Positives = 33/37 (89%)

Query: 27 LKRVDHKKFLANKPELPPHRDFNDKWDDDDDWPKKDQ 63
          ++++D K+FL NKP+LPPHRDFN+KWDD+DDWP + +
Sbjct: 1  MQKIDPKRFLDNKPKLPPHRDFNNKWDDEDDWPNQKK 37


  Database: uniref50.fasta
    Posted date:  Mar 8, 2010 10:38 AM
  Number of letters in database: 1,040,396,356
  Number of sequences in database:  3,077,464
  
Lambda     K      H
   0.314    0.142    0.529 

Lambda     K      H
   0.267   0.0447    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 369,124,074
Number of Sequences: 3077464
Number of extensions: 14047739
Number of successful extensions: 50725
Number of sequences better than 1.0e-01: 3
Number of HSP's better than  0.1 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 50715
Number of HSP's gapped (non-prelim): 6
length of query: 66
length of database: 1,040,396,356
effective HSP length: 38
effective length of query: 28
effective length of database: 923,452,724
effective search space: 25856676272
effective search space used: 25856676272
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 87 (38.0 bits)
