BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (315 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P33371 tRNA-dihydrouridine synthase C n=160 Tax=Gammapr... 648 0.0 UniRef50_Q9CJW1 tRNA-dihydrouridine synthase C n=7 Tax=Gammaprot... 449 e-125 UniRef50_Q87N01 tRNA-dihydrouridine synthase C n=54 Tax=Gammapro... 389 e-107 UniRef50_Q9KT00 tRNA-dihydrouridine synthase C n=75 Tax=Gammapro... 386 e-106 UniRef50_Q1ZGI3 NifR3/Smm1 family protein n=1 Tax=Psychromonas s... 297 3e-79 UniRef50_B0SC53 tRNA-dihydrouridine synthase n=2 Tax=Leptospira ... 287 3e-76 UniRef50_Q127F8 Dihydrouridine synthase, DuS n=7 Tax=Proteobacte... 275 2e-72 UniRef50_B3PD21 Dihydrouridine synthase family protein n=4 Tax=P... 268 1e-70 UniRef50_A4BCJ5 NifR3/Smm1 family protein n=1 Tax=Reinekea bland... 266 1e-69 UniRef50_A4AAB0 tRNA-dihydrouridine synthase C n=6 Tax=Gammaprot... 261 3e-68 UniRef50_Q88LF2 tRNA-dihydrouridine synthase C n=38 Tax=cellular... 256 7e-67 UniRef50_D0J1P6 Dihydrouridine synthase, DuS n=7 Tax=cellular or... 255 1e-66 UniRef50_Q47C15 Dihydrouridine synthase, DuS n=1 Tax=Dechloromon... 254 3e-66 UniRef50_Q1N033 Putative uncharacterized protein n=1 Tax=Bermane... 249 7e-65 UniRef50_A3JG66 Putative uncharacterized protein n=3 Tax=Gammapr... 249 7e-65 UniRef50_Q4FQ57 Possible tRNA-dihydrouridine synthase n=24 Tax=G... 245 1e-63 UniRef50_Q21L63 Dihydrouridine synthase, DuS n=1 Tax=Saccharopha... 244 2e-63 UniRef50_Q9JUP6 tRNA-dihydrouridine synthase C n=23 Tax=Neisseri... 241 2e-62 UniRef50_Q884C6 tRNA-dihydrouridine synthase C n=13 Tax=Proteoba... 238 3e-61 UniRef50_C5TM05 tRNA-dihydrouridine synthase C n=5 Tax=Neisseria... 232 1e-59 UniRef50_Q1QZQ6 Dihydrouridine synthase, DuS n=1 Tax=Chromohalob... 221 4e-56 UniRef50_A6W1E8 Dihydrouridine synthase DuS n=1 Tax=Marinomonas ... 214 3e-54 UniRef50_A6GHV6 Dihydrouridine synthase family protein n=1 Tax=P... 208 2e-52 UniRef50_UPI00016C52C4 dihydrouridine synthase DuS n=1 Tax=Gemma... 188 2e-46 UniRef50_A5F2I8 Putative uncharacterized protein n=2 Tax=Vibrio ... 151 3e-35 UniRef50_Q55724 Probable tRNA-dihydrouridine synthase 1 n=34 Tax... 150 8e-35 UniRef50_C0GJW0 TIM-barrel protein, nifR3 family n=1 Tax=Dethiob... 149 2e-34 UniRef50_A6DPY9 Putative uncharacterized protein n=1 Tax=Lentisp... 147 3e-34 UniRef50_Q3A324 Dihydrouridine synthase n=10 Tax=Desulfuromonada... 145 2e-33 UniRef50_D1AWB1 Dihydrouridine synthase DuS n=12 Tax=Fusobacteri... 138 2e-31 UniRef50_B8GCQ5 TIM-barrel protein, nifR3 family n=6 Tax=Chlorof... 137 4e-31 UniRef50_P96192 tRNA-dihydrouridine synthase C n=1 Tax=Azotobact... 135 2e-30 UniRef50_Q3AZ67 Dihydrouridine synthase TIM-barrel protein nifR3... 135 3e-30 UniRef50_Q2RTR9 Dihydrouridine synthase TIM-barrel protein nifR3... 135 3e-30 UniRef50_UPI0001BC5FF0 nitrogen regulation protein NIFR3 n=1 Tax... 132 2e-29 UniRef50_C6JNK3 Dihydrouridine-tRNA ligase n=4 Tax=Fusobacterium... 131 3e-29 UniRef50_B9JW92 Nitrogen regulation protein n=4 Tax=Rhizobiales ... 131 4e-29 UniRef50_Q5ZRM0 Nitrogen regulation protein n=6 Tax=Legionella R... 130 7e-29 UniRef50_B3QWF2 TIM-barrel protein, nifR3 family n=26 Tax=Bacter... 130 9e-29 UniRef50_B0UHM8 TIM-barrel protein, nifR3 family n=6 Tax=Rhizobi... 129 2e-28 UniRef50_B0TBQ2 Dihydrouridine synthase tim-barrel nifr3 family ... 127 5e-28 UniRef50_A4RVX6 Predicted protein n=2 Tax=Ostreococcus RepID=A4R... 126 1e-27 UniRef50_D2RLJ7 TIM-barrel protein, nifR3 family n=1 Tax=Acidami... 126 1e-27 UniRef50_Q1IVR5 Dihydrouridine synthase TIM-barrel protein nifR3... 125 1e-27 UniRef50_P44965 tRNA-dihydrouridine synthase B n=20 Tax=Pasteure... 125 1e-27 UniRef50_A0LJ96 Putative TIM-barrel protein, nifR3 family n=1 Ta... 125 2e-27 UniRef50_D1BLD4 TIM-barrel protein, nifR3 family n=12 Tax=cellul... 125 2e-27 UniRef50_C0WDP2 Putative uncharacterized protein n=1 Tax=Acidami... 125 2e-27 UniRef50_C8WHM7 TIM-barrel protein, nifR3 family n=2 Tax=Corioba... 125 2e-27 UniRef50_B9ZKT6 TIM-barrel protein, nifR3 family n=1 Tax=Thioalk... 125 2e-27 UniRef50_B9MMW4 TIM-barrel protein, nifR3 family n=3 Tax=Clostri... 125 2e-27 UniRef50_B9NQS6 NifR3 family protein n=3 Tax=Rhodobacteraceae Re... 125 2e-27 UniRef50_Q8PX79 NifR3-like protein n=3 Tax=Methanosarcina RepID=... 125 2e-27 UniRef50_C9KMX2 tRNA-dihydrouridine synthase n=3 Tax=Veillonella... 125 3e-27 UniRef50_C8W3U6 TIM-barrel protein, nifR3 family n=8 Tax=Clostri... 124 6e-27 UniRef50_Q1RH84 Probable tRNA-dihydrouridine synthase n=59 Tax=A... 123 8e-27 UniRef50_A9NE09 tRNA-dihydrouridine synthase n=2 Tax=Mollicutes ... 123 9e-27 UniRef50_P41504 Probable tRNA-dihydrouridine synthase n=93 Tax=A... 123 1e-26 UniRef50_Q6F288 TRNA dihydrouridine synthetase n=3 Tax=Mollicute... 122 2e-26 UniRef50_C7GZ00 tRNA-dihydrouridine synthase n=1 Tax=Eubacterium... 122 2e-26 UniRef50_Q6SFW7 NifR3/Smm1 family protein n=1 Tax=uncultured mar... 121 3e-26 UniRef50_Q6MRF1 Transcription regulator homolog yacF n=1 Tax=Bde... 121 3e-26 UniRef50_C1FNC8 Dihydrouridine synthase n=35 Tax=cellular organi... 121 4e-26 UniRef50_B9JF02 tRNA-dihydrouridine synthase protein n=12 Tax=Al... 120 6e-26 UniRef50_D0LJX3 TIM-barrel protein, nifR3 family n=1 Tax=Haliang... 119 1e-25 UniRef50_C9XSF8 tRNA-dihydrouridine synthase n=24 Tax=Clostridia... 119 1e-25 UniRef50_B2A3T5 TIM-barrel protein, nifR3 family n=1 Tax=Natrana... 119 1e-25 UniRef50_A9KHE5 TIM-barrel protein, nifR3 family n=2 Tax=Clostri... 118 2e-25 UniRef50_Q2IG49 Dihydrouridine synthase TIM-barrel protein nifR3... 118 3e-25 UniRef50_A8J281 Predicted protein (Fragment) n=3 Tax=cellular or... 117 4e-25 UniRef50_C1MXD1 Dihydrouridine synthase n=1 Tax=Micromonas pusil... 117 4e-25 UniRef50_Q6M9N8 Putative uncharacterized protein n=1 Tax=Candida... 117 8e-25 UniRef50_A8ZYE4 Putative TIM-barrel protein, nifR3 family n=1 Ta... 116 8e-25 UniRef50_Q31II6 Dihydrouridine synthase n=1 Tax=Thiomicrospira c... 116 1e-24 UniRef50_Q2LR94 TRNA-dihydrouridine synthase n=2 Tax=Deltaproteo... 116 1e-24 UniRef50_B1C9Q3 Putative uncharacterized protein n=1 Tax=Anaerof... 115 1e-24 UniRef50_Q1NXZ7 Dihydrouridine synthase TIM-barrel protein nifR3... 115 1e-24 UniRef50_B6YQB2 tRNA-dihydrouridine synthase n=36 Tax=Bacteria R... 115 2e-24 UniRef50_A3VWV8 TRNA-dihydrouridine synthase, putative n=4 Tax=R... 115 2e-24 UniRef50_D0L1E3 TIM-barrel protein, nifR3 family n=1 Tax=Halothi... 115 2e-24 UniRef50_B8GW86 tRNA-dihydrouridine synthase n=7 Tax=Alphaproteo... 115 3e-24 UniRef50_A9GW95 Dihydrouridine synthase TIM-barrel protein nifR3... 114 5e-24 UniRef50_C3MBL4 tRNA-dihydrouridine synthase n=1 Tax=Rhizobium s... 113 7e-24 UniRef50_C6XJQ7 Dihydrouridine synthase DuS n=2 Tax=Hyphomonadac... 113 8e-24 UniRef50_A0M6M9 TRNA-dihydrouridine synthase n=16 Tax=Bacteroide... 113 8e-24 UniRef50_C7LQM9 Dihydrouridine synthase DuS n=2 Tax=Desulfovibri... 113 9e-24 UniRef50_B1LWM8 TIM-barrel protein, nifR3 family n=1 Tax=Methylo... 113 9e-24 UniRef50_D1R8P9 Putative uncharacterized protein n=1 Tax=Parachl... 113 9e-24 UniRef50_C1F4Z7 Putative tRNA-dihydrouridine synthase n=1 Tax=Ac... 112 1e-23 UniRef50_Q5FMA1 Transcriptional regulator n=14 Tax=Firmicutes Re... 112 2e-23 UniRef50_Q14SX5 Putative dihydrouridine synthase n=6 Tax=Clostri... 112 2e-23 UniRef50_C7PIH0 TIM-barrel protein, nifR3 family n=7 Tax=Bactero... 112 2e-23 UniRef50_D0U4P6 tRNA-dihydrouridine synthase n=2 Tax=uncultured ... 112 2e-23 UniRef50_P37567 Probable tRNA-dihydrouridine synthase 1 n=19 Tax... 112 2e-23 UniRef50_C7RGQ7 TIM-barrel protein, nifR3 family n=4 Tax=Anaeroc... 111 3e-23 UniRef50_Q090Q9 TRNA-dihydrouridine synthase B n=2 Tax=Cystobact... 111 4e-23 UniRef50_A4S604 Predicted protein (Fragment) n=2 Tax=Mamiellales... 111 4e-23 UniRef50_C1EEA5 Dihydrouridine synthase n=1 Tax=Micromonas sp. R... 110 4e-23 UniRef50_C1SJZ7 tRNA-dihydrouridine synthase n=1 Tax=Denitrovibr... 110 5e-23 UniRef50_C4Z9L8 tRNA-dihydrouridine synthase n=26 Tax=Firmicutes... 110 5e-23 UniRef50_C1A3V7 Putative tRNA-dihydrouridine synthase n=1 Tax=Ge... 110 7e-23 UniRef50_Q1J2A4 Dihydrouridine synthase, DuS n=3 Tax=Deinococcus... 110 8e-23 UniRef50_B8FGI4 TIM-barrel protein, nifR3 family n=1 Tax=Desulfa... 110 8e-23 UniRef50_A5FL15 tRNA-dihydrouridine synthase B-like protein n=14... 110 9e-23 UniRef50_A0Q6L0 TRNA-dihydrouridine synthase n=19 Tax=Francisell... 110 9e-23 UniRef50_Q0BSS6 tRNA-dihydrouridine synthase n=15 Tax=Alphaprote... 109 1e-22 UniRef50_Q256J2 Dehydrogenases n=13 Tax=Chlamydiaceae RepID=Q256... 109 1e-22 UniRef50_A1AT39 Dihydrouridine synthase, DuS n=7 Tax=Desulfuromo... 109 2e-22 UniRef50_Q9ZLB6 Probable tRNA-dihydrouridine synthase n=23 Tax=E... 109 2e-22 UniRef50_B7GFK6 tRNA-dihydrouridine synthase n=211 Tax=Bacteria ... 109 2e-22 UniRef50_Q9KV66 tRNA-dihydrouridine synthase B n=56 Tax=Proteoba... 109 2e-22 UniRef50_A6BZR9 Predicted TIM-barrel enzyme, possibly dehydrogen... 108 2e-22 UniRef50_Q88DK5 tRNA-dihydrouridine synthase B n=460 Tax=Proteob... 108 2e-22 UniRef50_Q1Q3Q8 Strongly similar to tRNA-dihydrouridine synthase... 108 3e-22 UniRef50_C7H613 tRNA-dihydrouridine synthase n=3 Tax=Ruminococca... 108 3e-22 UniRef50_C0QXB6 Dihydrouridine synthase-like (DUS-like) FMN-bind... 108 4e-22 UniRef50_A6NW05 Putative uncharacterized protein n=1 Tax=Bactero... 107 4e-22 UniRef50_D2U2K4 tRNA-dihydrouridine synthase B n=1 Tax=Arsenopho... 107 4e-22 UniRef50_D0NNQ3 tRNA-dihydrouridine synthase, putative n=1 Tax=P... 107 6e-22 UniRef50_C1ZB06 tRNA-dihydrouridine synthase n=1 Tax=Planctomyce... 107 8e-22 UniRef50_B8FH09 Dihydrouridine synthase DuS n=1 Tax=Desulfatibac... 106 9e-22 UniRef50_C6C170 Dihydrouridine synthase DuS n=1 Tax=Desulfovibri... 106 9e-22 UniRef50_Q12U52 tRNA-dihydrouridine synthase n=2 Tax=Archaea Rep... 106 1e-21 UniRef50_UPI0000D52F94 Dihydrouridine synthase TIM-barrel protei... 106 1e-21 UniRef50_D1AZV6 Dihydrouridine synthase DuS n=7 Tax=Campylobacte... 106 1e-21 UniRef50_B2ULM0 TIM-barrel protein, nifR3 family n=3 Tax=Verruco... 106 1e-21 UniRef50_C8X244 Dihydrouridine synthase DuS n=1 Tax=Desulfohalob... 106 1e-21 UniRef50_Q09504 Uncharacterized tRNA-dihydrouridine synthase-lik... 105 1e-21 UniRef50_B0S913 tRNA-dihydrouridine synthase n=7 Tax=Leptospira ... 105 2e-21 UniRef50_B2UM21 Dihydrouridine synthase DuS n=1 Tax=Akkermansia ... 105 2e-21 UniRef50_Q9VJ06 CG10495 n=12 Tax=Drosophila RepID=Q9VJ06_DROME 105 2e-21 UniRef50_Q2RM54 Dihydrouridine synthase TIM-barrel protein nifR3... 105 2e-21 UniRef50_Q5M689 Possible transcriptional regulator n=25 Tax=Stre... 104 3e-21 UniRef50_A6CBK4 Predicted TIM-barrel enzyme, possibly dehydrogen... 104 4e-21 UniRef50_B9XLX7 Dihydrouridine synthase DuS n=3 Tax=Verrucomicro... 104 4e-21 UniRef50_Q54XQ6 tRNA-dihydrouridine synthase 1-like protein n=1 ... 104 4e-21 UniRef50_C9RMP3 Dihydrouridine synthase DuS n=1 Tax=Fibrobacter ... 103 7e-21 UniRef50_B0SXE6 TIM-barrel protein, nifR3 family n=2 Tax=Cauloba... 103 7e-21 UniRef50_UPI000186DA49 tRNA-dihydrouridine synthase, putative n=... 103 8e-21 UniRef50_Q0F181 Dihydrouridine synthase TIM-barrel protein nifR3... 103 8e-21 UniRef50_A8Y3E7 Putative uncharacterized protein n=2 Tax=Caenorh... 103 9e-21 UniRef50_Q7QCT0 AGAP002791-PA (Fragment) n=3 Tax=Culicidae RepID... 103 9e-21 UniRef50_B0VH62 Dihydrouridine synthase family protein n=1 Tax=C... 103 9e-21 UniRef50_D1U4K9 Dihydrouridine synthase DuS n=1 Tax=Desulfovibri... 103 9e-21 UniRef50_Q7X346 Putative uncharacterized protein n=1 Tax=uncultu... 102 1e-20 UniRef50_C8QWB5 Dihydrouridine synthase DuS n=1 Tax=Desulfurivib... 102 2e-20 UniRef50_A0Z0J5 TRNA-dihydrouridine synthase B n=2 Tax=unclassif... 102 2e-20 UniRef50_C5F231 Putative uncharacterized protein n=2 Tax=Helicob... 102 2e-20 UniRef50_C1DY86 Dihydrouridine synthase-like family protein n=1 ... 102 2e-20 UniRef50_D2QXV2 Dihydrouridine synthase DuS n=4 Tax=Planctomycet... 102 2e-20 UniRef50_Q30WR3 Dihydrouridine synthase family protein n=3 Tax=D... 102 3e-20 UniRef50_C5CI99 Dihydrouridine synthase DuS n=1 Tax=Kosmotoga ol... 101 3e-20 UniRef50_Q08111 Probable tRNA-dihydrouridine synthase n=17 Tax=A... 101 3e-20 UniRef50_D1VTQ2 Probable tRNA-dihydrouridine synthase n=1 Tax=Pe... 101 4e-20 UniRef50_C0QKE4 Dhs2 n=1 Tax=Desulfobacterium autotrophicum HRM2... 100 5e-20 UniRef50_A7I0T0 NifR3 family protein n=9 Tax=Epsilonproteobacter... 100 5e-20 UniRef50_UPI00015B403F PREDICTED: similar to MGC79829 protein n=... 100 5e-20 UniRef50_B6W908 Putative uncharacterized protein n=1 Tax=Anaeroc... 100 5e-20 UniRef50_A5EVV4 Dihydrouridine synthase n=2 Tax=Cardiobacteriace... 100 5e-20 UniRef50_C2KYD0 Dihydrouridine synthase n=4 Tax=Bacteria RepID=C... 100 8e-20 UniRef50_O67533 Probable tRNA-dihydrouridine synthase n=1 Tax=Aq... 100 8e-20 UniRef50_B8DSX5 Possible NifR3-like protein n=15 Tax=Bifidobacte... 100 9e-20 UniRef50_B8DIS9 Dihydrouridine synthase DuS n=2 Tax=Desulfovibri... 100 9e-20 UniRef50_A9BIR6 Dihydrouridine synthase DuS n=1 Tax=Petrotoga mo... 100 1e-19 UniRef50_C8W6Y9 TIM-barrel protein, nifR3 family n=1 Tax=Atopobi... 99 2e-19 UniRef50_A9A4W7 Putative TIM-barrel protein, nifR3 family n=1 Ta... 99 2e-19 UniRef50_C5WE57 tRNA-dihydrouridine synthase n=42 Tax=Streptococ... 99 2e-19 UniRef50_O95620 tRNA-dihydrouridine synthase 4-like n=40 Tax=Met... 99 3e-19 UniRef50_UPI000179183B PREDICTED: similar to tRNA-dihydrouridine... 99 3e-19 UniRef50_D2RA64 TIM-barrel protein, nifR3 family n=5 Tax=Actinob... 99 3e-19 UniRef50_B1ZWU6 TIM-barrel protein, nifR3 family n=6 Tax=Verruco... 98 3e-19 UniRef50_B9M3C8 Dihydrouridine synthase DuS n=2 Tax=Desulfuromon... 98 3e-19 UniRef50_D1NSS9 Putative tRNA-dihydrouridine synthase n=1 Tax=Bi... 98 4e-19 UniRef50_B0S217 Nitrogen regulation protein n=3 Tax=Clostridiale... 98 4e-19 UniRef50_C0W327 Dihydrouridine synthase n=2 Tax=Actinomyces RepI... 97 5e-19 UniRef50_D1N5U0 Dihydrouridine synthase DuS n=1 Tax=Victivallis ... 97 5e-19 UniRef50_C1ZDL9 Putative TIM-barrel protein, nifR3 family n=1 Ta... 97 5e-19 UniRef50_Q6A959 TIM-barrel enzyme, NifR3 family n=2 Tax=Propioni... 97 6e-19 UniRef50_D0WEP2 tRNA-dihydrouridine synthase B n=2 Tax=Slackia R... 97 6e-19 UniRef50_Q6AJZ5 tRNA-dihydrouridine synthase n=1 Tax=Desulfotale... 97 7e-19 UniRef50_A8ICF9 Predicted protein (Fragment) n=1 Tax=Chlamydomon... 97 7e-19 UniRef50_A0EG06 Chromosome undetermined scaffold_94, whole genom... 97 7e-19 UniRef50_A1VHK2 Dihydrouridine synthase, DuS n=10 Tax=Desulfovib... 96 1e-18 UniRef50_Q54ES7 tRNA-dihydrouridine synthase 4-like protein n=1 ... 96 1e-18 UniRef50_Q3MB47 Dihydrouridine synthase, DuS n=6 Tax=Bacteria Re... 96 1e-18 UniRef50_C1ZGV0 tRNA-dihydrouridine synthase n=1 Tax=Planctomyce... 96 2e-18 UniRef50_A6DCX2 tRNA-dihydrouridine synthase B n=1 Tax=Caminibac... 95 3e-18 UniRef50_C9LMP9 tRNA-dihydrouridine synthase n=1 Tax=Dialister i... 95 3e-18 UniRef50_Q8SUV4 Putative uncharacterized protein ECU07_1610 n=1 ... 95 4e-18 UniRef50_B9K738 TIM-barrel protein, nifR3 family n=1 Tax=Thermot... 93 1e-17 UniRef50_Q4PG83 Putative uncharacterized protein n=2 Tax=Ustilag... 93 1e-17 UniRef50_A2F0D1 Putative uncharacterized protein n=1 Tax=Trichom... 92 2e-17 UniRef50_Q5KPM6 Putative uncharacterized protein n=2 Tax=Filobas... 92 2e-17 UniRef50_A7HK00 Dihydrouridine synthase DuS n=8 Tax=Thermotogace... 92 2e-17 UniRef50_D1AII6 Dihydrouridine synthase DuS n=1 Tax=Sebaldella t... 92 2e-17 UniRef50_D2MLS1 TIM-barrel protein, nifR3 family n=1 Tax=Bulleid... 92 2e-17 UniRef50_B9L781 tRNA-dihydrouridine synthase B n=1 Tax=Nautilia ... 92 2e-17 UniRef50_A7BE39 Putative uncharacterized protein n=1 Tax=Actinom... 92 3e-17 UniRef50_O83945 Probable tRNA-dihydrouridine synthase n=4 Tax=Tr... 92 3e-17 UniRef50_C1EGQ3 Predicted protein n=2 Tax=Micromonas RepID=C1EGQ... 92 4e-17 UniRef50_Q5CSA9 Dus1p, tRNA dihydrouridine synthase (Fragment) n... 91 4e-17 UniRef50_A9UTQ9 Predicted protein n=1 Tax=Monosiga brevicollis R... 91 4e-17 UniRef50_B1ZZ77 Dihydrouridine synthase DuS n=2 Tax=Opitutaceae ... 91 5e-17 UniRef50_B9PUI2 Dihydrouridine synthase domain-containing protei... 91 5e-17 UniRef50_Q9RDC6 Putative uncharacterized protein SCO2497 n=4 Tax... 91 7e-17 UniRef50_A6DU09 Dihydrouridine synthase family protein n=1 Tax=L... 91 8e-17 UniRef50_D2VPP8 Predicted protein n=1 Tax=Naegleria gruberi RepI... 90 9e-17 UniRef50_Q6C4K2 YALI0E26059p n=1 Tax=Yarrowia lipolytica RepID=Q... 90 9e-17 UniRef50_C1E909 tRNA-dihydrouridine synthase (Fragment) n=2 Tax=... 90 1e-16 UniRef50_B0EC90 tRNA-dihydrouridine synthase, putative n=2 Tax=E... 90 1e-16 UniRef50_D2NNX0 tRNA-dihydrouridine synthase n=3 Tax=Actinobacte... 90 1e-16 UniRef50_A8F480 Dihydrouridine synthase DuS n=1 Tax=Thermotoga l... 89 1e-16 UniRef50_UPI0001C3129C dihydrouridine synthase DuS n=1 Tax=Conex... 89 2e-16 UniRef50_A8J121 Predicted protein n=1 Tax=Chlamydomonas reinhard... 89 2e-16 UniRef50_C8X0F5 Dihydrouridine synthase DuS n=1 Tax=Desulfohalob... 89 2e-16 UniRef50_A7H1K2 tRNA-dihydrouridine synthase B n=14 Tax=Campylob... 89 2e-16 UniRef50_Q6AKJ6 Putative uncharacterized protein n=1 Tax=Desulfo... 89 2e-16 UniRef50_Q2RZL4 NifR3 family enzyme n=2 Tax=Rhodothermaceae RepI... 89 2e-16 UniRef50_B8P1L7 Predicted protein (Fragment) n=3 Tax=Basidiomyco... 89 3e-16 UniRef50_A7AQM0 Dihydrouridine synthase, putative n=1 Tax=Babesi... 89 3e-16 UniRef50_D2VPF2 Predicted protein n=2 Tax=Naegleria gruberi RepI... 89 3e-16 UniRef50_B7XJM7 tRNA-dihydrouridine synthase 1 n=1 Tax=Enterocyt... 88 3e-16 UniRef50_C2D6C5 Possible tRNA-dihydrouridine synthase n=1 Tax=At... 88 4e-16 UniRef50_Q6MNE9 Nitrogen regulation protein nifR3 n=1 Tax=Bdello... 88 4e-16 UniRef50_C0NEG2 tRNA-dihydrouridine synthase n=5 Tax=Ajellomyces... 87 6e-16 UniRef50_Q00XL7 TRNA-dihydrouridine synthase (ISS) n=1 Tax=Ostre... 87 6e-16 UniRef50_D0LY25 TIM-barrel protein, yjbN family n=3 Tax=Bacteria... 87 8e-16 UniRef50_Q72EB7 Dihydrouridine synthase family protein n=4 Tax=D... 87 1e-15 UniRef50_UPI0001BCCF0E nifR3 family TIM-barrel protein n=1 Tax=A... 86 1e-15 UniRef50_B7PPV8 tRNA-dihydrouridine synthase, putative n=1 Tax=I... 86 1e-15 UniRef50_Q5HJT5 Probable tRNA-dihydrouridine synthase n=92 Tax=F... 86 1e-15 UniRef50_D2R6Z1 TIM-barrel protein, nifR3 family n=3 Tax=Plancto... 86 1e-15 UniRef50_A4E892 Putative uncharacterized protein n=4 Tax=Collins... 86 2e-15 UniRef50_Q5KP54 Putative uncharacterized protein n=1 Tax=Filobas... 86 2e-15 UniRef50_C4VA23 Putative uncharacterized protein n=1 Tax=Nosema ... 86 2e-15 UniRef50_P53759 tRNA-dihydrouridine synthase 1 n=19 Tax=Ascomyco... 86 2e-15 UniRef50_A4S141 Predicted protein (Fragment) n=1 Tax=Ostreococcu... 86 2e-15 UniRef50_C5LIP5 Ornithine decarboxylase n=4 Tax=Perkinsus marinu... 86 2e-15 UniRef50_C5DS92 ZYRO0B14872p n=1 Tax=Zygosaccharomyces rouxii Re... 85 3e-15 UniRef50_B0CNE7 Predicted protein n=3 Tax=Agaricales RepID=B0CNE... 85 3e-15 UniRef50_O53835 Probable tRNA-dihydrouridine synthase n=107 Tax=... 85 3e-15 UniRef50_A4RM51 Putative uncharacterized protein n=2 Tax=Sacchar... 85 3e-15 UniRef50_UPI000180C543 PREDICTED: similar to dihydrouridine synt... 85 3e-15 UniRef50_A6QPA8 DUS4L protein n=2 Tax=Eutheria RepID=A6QPA8_BOVIN 85 4e-15 UniRef50_A7NDQ7 tRNA dihydrouridine synthase n=17 Tax=Francisell... 85 4e-15 UniRef50_B8P5W1 Predicted protein n=1 Tax=Postia placenta Mad-69... 85 4e-15 UniRef50_A8QBG9 PP3111 protein, putative n=1 Tax=Brugia malayi R... 84 4e-15 UniRef50_B1GZV7 Putative tRNA-dihydrouridine synthase n=1 Tax=un... 84 5e-15 UniRef50_Q7RX85 Putative uncharacterized protein n=1 Tax=Neurosp... 84 6e-15 UniRef50_UPI00006A5AE6 PREDICTED: similar to PP3111 protein n=1 ... 84 6e-15 >UniRef50_P33371 tRNA-dihydrouridine synthase C n=160 Tax=Gammaproteobacteria RepID=DUSC_ECOLI Length = 315 Score = 648 bits (1671), Expect = 0.0, Method: Compositional matrix adjust. Identities = 315/315 (100%), Positives = 315/315 (100%) Query: 1 MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTP 60 MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTP Sbjct: 1 MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTP 60 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY Sbjct: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH Sbjct: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN Sbjct: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 Query: 241 EPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNNS 300 EPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNNS Sbjct: 241 EPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNNS 300 Query: 301 PDIARAIQAIDIEKL 315 PDIARAIQAIDIEKL Sbjct: 301 PDIARAIQAIDIEKL 315 >UniRef50_Q9CJW1 tRNA-dihydrouridine synthase C n=7 Tax=Gammaproteobacteria RepID=DUSC_PASMU Length = 312 Score = 449 bits (1156), Expect = e-125, Method: Compositional matrix adjust. Identities = 210/310 (67%), Positives = 247/310 (79%) Query: 1 MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTP 60 MRV+LAPM+GVLD VR+LLT+VN YDLC++EFVRVVDQLLP KVF+R+CPEL T Sbjct: 1 MRVILAPMQGVLDPFVRQLLTQVNQYDLCVSEFVRVVDQLLPTKVFYRLCPELYQQGLTA 60 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 SGT VRVQLLGQ PQWLAENA RA+ELGS G+DLNCGCPSKTVNGS GGA+LLK PELIY Sbjct: 61 SGTPVRVQLLGQHPQWLAENAQRAIELGSHGIDLNCGCPSKTVNGSNGGASLLKQPELIY 120 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 KA+R AVP LPVSVKVRLGWD+ E+ FEIADAVQQ GATE+ +HGRTK GYRA+ Sbjct: 121 HATKALRAAVPKALPVSVKVRLGWDNSEQAFEIADAVQQGGATEITIHGRTKMDGYRADR 180 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 I+W I D+RQRL+IPVIANGEIWDWQS Q C+A +GC +MIGRGALNIPNLS+VVK+N Sbjct: 181 INWAKINDVRQRLSIPVIANGEIWDWQSGQACLAETGCQDLMIGRGALNIPNLSQVVKFN 240 Query: 241 EPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNNS 300 + +MPW EV+ LL +Y E Q DTG YHVARIKQWL YL+K Y +A LFQ ++ ++ Sbjct: 241 QAKMPWAEVLILLHQYAHTENQFDTGFYHVARIKQWLGYLKKAYPQADALFQLIKTCHDG 300 Query: 301 PDIARAIQAI 310 + I + Sbjct: 301 QALRMKIDGV 310 >UniRef50_Q87N01 tRNA-dihydrouridine synthase C n=54 Tax=Gammaproteobacteria RepID=DUSC_VIBPA Length = 322 Score = 389 bits (999), Expect = e-107, Method: Compositional matrix adjust. Identities = 179/308 (58%), Positives = 230/308 (74%) Query: 1 MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTP 60 MRV+L PMEGVLD L+R++LTE+NDYDLC+TEFVRV+DQ+LP VFHR+CPEL S+T Sbjct: 1 MRVVLGPMEGVLDHLMRQILTEINDYDLCVTEFVRVIDQVLPDHVFHRLCPELMQGSQTT 60 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 SG V VQLLGQ P W+AENA RA ELG+ G+DLN GCP+K VN S GGA LL+ PELI+ Sbjct: 61 SGVPVHVQLLGQEPHWMAENAIRAAELGARGIDLNFGCPAKMVNKSKGGAALLQHPELIH 120 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 KA R+AVPA++PVS K+RLGW++ E FEI DA+Q AGA EL VH RTK+ GY+A Sbjct: 121 SVVKACRDAVPANIPVSAKIRLGWENPEDCFEIVDAIQSAGANELTVHARTKQGGYKASE 180 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 I W+ I IR+R +IP+IANGEIW+++ Q+C+ +G D++M+ RGA NIPNL +VK+N Sbjct: 181 IKWEYINKIRERFSIPLIANGEIWNFEDGQRCIETTGVDSLMVCRGAFNIPNLGNMVKHN 240 Query: 241 EPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNNS 300 M W +VV LL Y++ E +GD GLY+ R+KQW +YLR+ Y EA ELF+ +R N + Sbjct: 241 HTPMVWSDVVDLLIYYSKFEMKGDKGLYYPNRVKQWFAYLRQSYPEANELFREIRTFNKA 300 Query: 301 PDIARAIQ 308 I IQ Sbjct: 301 APIVEHIQ 308 >UniRef50_Q9KT00 tRNA-dihydrouridine synthase C n=75 Tax=Gammaproteobacteria RepID=DUSC_VIBCH Length = 323 Score = 386 bits (991), Expect = e-106, Method: Compositional matrix adjust. Identities = 180/298 (60%), Positives = 223/298 (74%) Query: 1 MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTP 60 MRV+L PMEGVLD L+R++LT++NDYD C+TEFVRVV+ LLP VF+R+CPELQ S+TP Sbjct: 1 MRVILGPMEGVLDHLMRDMLTQINDYDFCVTEFVRVVNLLLPDHVFYRLCPELQQGSKTP 60 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 SG V+VQLLGQ P W+AENA RA ELG++G+DLN GCP+K VN S GGA LL+ PELIY Sbjct: 61 SGVPVKVQLLGQDPHWMAENAIRAAELGAYGIDLNFGCPAKMVNQSKGGAALLQHPELIY 120 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 Q KA R+AVPAH+PVS K+RLGW+ E FEI DAV QA A EL VH RTK GY+A Sbjct: 121 QVVKACRDAVPAHIPVSAKIRLGWEDPEDCFEIVDAVAQAKADELTVHARTKAGGYKASE 180 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 I W I IRQ+ +IP+IANGE+W++ Q C+ +G D++M+ RGALN+PNL VVK+N Sbjct: 181 IKWHYIDQIRQKCSIPLIANGEVWNYADGQACIQTTGVDSLMVCRGALNVPNLGNVVKHN 240 Query: 241 EPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLN 298 MPW EVV LL +YT+ E +GD G Y+ RIKQW +YLR Y +A ELF +R L Sbjct: 241 HAAMPWHEVVDLLLRYTQFEVRGDKGKYYPNRIKQWFAYLRHAYPQANELFGELRTLT 298 >UniRef50_Q1ZGI3 NifR3/Smm1 family protein n=1 Tax=Psychromonas sp. CNPT3 RepID=Q1ZGI3_9GAMM Length = 313 Score = 297 bits (760), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 147/308 (47%), Positives = 207/308 (67%), Gaps = 1/308 (0%) Query: 1 MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTP 60 M++ LAPMEGV+D +R LLT + DLC+TEF+RV+ LP KV+ R+ PEL N S+TP Sbjct: 1 MKITLAPMEGVMDHHMRALLTSLGGIDLCVTEFIRVISLTLPAKVYRRVSPELFNQSKTP 60 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 SGT VR+QLLGQ PQ LA NA +A+ +GS G+DLN GCP+K VN S GGA LLK PE +Y Sbjct: 61 SGTPVRIQLLGQDPQCLANNARKALLVGSDGIDLNFGCPAKAVNKSKGGAILLKSPETLY 120 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 + K +R ++ +SVK+RLG+ E A A+ +AGA EL VH RTKE+GY A Sbjct: 121 KIVKEVRASMHTCETLSVKIRLGYADKSLAIENAQAICEAGANELAVHARTKEEGY-APP 179 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 W I IR+ ++IPV ANG+I+ + A++C ISGC ++MIGRGAL PNL++V+K Sbjct: 180 AHWHWIAKIRESIDIPVTANGDIFSAEDAKRCHEISGCHSLMIGRGALATPNLAQVIKGI 239 Query: 241 EPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNNS 300 E WP+++ L+ +Y ++ GD Y +RIKQWL+++R + +A Q VR + ++ Sbjct: 240 EEPYSWPQILTLMSQYLIVQTHGDKEKYLPSRIKQWLTFMRLQQPQALIFLQAVRKIKST 299 Query: 301 PDIARAIQ 308 ++ AI+ Sbjct: 300 QEMIHAIE 307 >UniRef50_B0SC53 tRNA-dihydrouridine synthase n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SC53_LEPBA Length = 316 Score = 287 bits (735), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 143/304 (47%), Positives = 200/304 (65%), Gaps = 2/304 (0%) Query: 1 MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTP 60 MR++LAPMEG+LD +RE+LT++ YD C++EF+RV D LLP F R PEL+N+SRT Sbjct: 1 MRIILAPMEGLLDFRLREILTQIGGYDECVSEFIRVNDTLLPPHRFFRTAPELKNSSRTK 60 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 S T V++Q+LG P +A+NA LG++G+D+N GCP+ TVN + GGA LLK+P L+Y Sbjct: 61 SDTPVKIQILGSDPNRMADNAHLVASLGAYGIDINFGCPAPTVNRNRGGAALLKEPNLMY 120 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 KA+R VP ++PV+ K+RLG++S E + A A+++ GA E+VVH RTK GY+ Sbjct: 121 SIVKAVRNVVPENIPVTAKMRLGYESTELALDCAKALEEGGAKEIVVHARTKTDGYKPPA 180 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 W+ I I+ L I VIANGEIW Q A QC ISGCD +MIGRGA+ P+++ ++K Sbjct: 181 Y-WEWIAKIKSILKINVIANGEIWTVQDAIQCQKISGCDDIMIGRGAVTNPSIALLIKKK 239 Query: 241 -EPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNN 299 E RM W + +L Y + + V RIKQWL YL +EY+EA FQ ++ ++N Sbjct: 240 LEERMSWQKTKEVLSSYWLSMEPDVEAVSRVGRIKQWLHYLSREYEEAQIDFQKIKRISN 299 Query: 300 SPDI 303 D Sbjct: 300 PKDF 303 >UniRef50_Q127F8 Dihydrouridine synthase, DuS n=7 Tax=Proteobacteria RepID=Q127F8_POLSJ Length = 344 Score = 275 bits (702), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 143/311 (45%), Positives = 193/311 (62%), Gaps = 20/311 (6%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 VLLAPMEG+LD ++R++LT V D C++EF+R+ DQLLP +VF RI PEL N RT +G Sbjct: 9 VLLAPMEGLLDFVLRDILTRVGGIDRCVSEFIRITDQLLPERVFTRIVPELHNGGRTLAG 68 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 VR QLLG P +AENAAR LG G+DLN GCP+ VN GGGA+LLK+PE + Sbjct: 69 VPVRAQLLGSDPACMAENAARLATLGPAGIDLNFGCPAAVVNRHGGGASLLKEPETLLAI 128 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHID 182 A+R AVPA +PVS K+RLG++ + E A A+ + GA ELVVH RTK Q Y+ Sbjct: 129 VSAVRRAVPAGMPVSAKMRLGYNDDSRAVECALAIAEGGAGELVVHARTKAQAYKPPAY- 187 Query: 183 WQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY--- 239 W+ I DIR + IPV+ANGEIW A++C SGC +MIGRGA+ P L +K Sbjct: 188 WERIADIRAAVQIPVVANGEIWTVDDARRCREASGCSMLMIGRGAVADPGLGLAIKAAMS 247 Query: 240 ------NEPRMPWPEVVALLQKY-----TRLEKQGDTGLYHVARIKQWLSYLRKEYDEAT 288 EP + W E+V LL + RL+ + G R+KQWL++LR+ + +A Sbjct: 248 HPAAGGQEPGITWAELVPLLADFWHVVCARLDARARPG-----RLKQWLNFLRRRFPQAE 302 Query: 289 ELFQHVRVLNN 299 +Q ++ + + Sbjct: 303 AAYQVLKTITD 313 >UniRef50_B3PD21 Dihydrouridine synthase family protein n=4 Tax=Proteobacteria RepID=B3PD21_CELJU Length = 321 Score = 268 bits (686), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 150/322 (46%), Positives = 199/322 (61%), Gaps = 15/322 (4%) Query: 1 MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTP 60 MR++LAPMEGV++ VR++LT + D C+TEF+RV DQ LP KVF++ EL+N +TP Sbjct: 1 MRIMLAPMEGVVEHHVRDILTRLGGLDGCVTEFIRVTDQKLPYKVFYKYAQELENHCQTP 60 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 +GT V+VQLLG P+ +A NA V G+ +DLN GCP+KTVN GGA LL+ P+ +Y Sbjct: 61 NGTPVKVQLLGSKPEPMALNAQELVRYGAKAIDLNFGCPAKTVNSHEGGACLLRTPDRVY 120 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 KA+R+AVP +PVS K+RLG++ E A AV+ AGA EL VH R+K GY+ Sbjct: 121 SIIKAVRDAVPRAIPVSAKIRLGFEDRTSYMENAQAVEAAGADELTVHARSKADGYKPPA 180 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY- 239 W I DI+ L IPVIANGEIW + +C S C VM+GRG L+ P+L+R +K Sbjct: 181 Y-WHYIADIKAALKIPVIANGEIWSVEDYLRCREQSQCADVMLGRGLLSCPDLARQIKAY 239 Query: 240 ---NEPR-MPWPEVVALLQKYTRLEKQGDTGLYHV----ARIKQWLSYLRKEYDEATELF 291 E R + W EV +L Y RL T LY R+KQWL YL ++Y EA F Sbjct: 240 LAGEEYRPLTWGEVCQILFDYYRL----TTPLYETRNCGNRVKQWLMYLSRQYPEANVFF 295 Query: 292 QHVRVLNNSPDI-ARAIQAIDI 312 + V+ DI A IQA+D+ Sbjct: 296 EAVKRKTTPADIEACFIQAMDV 317 >UniRef50_A4BCJ5 NifR3/Smm1 family protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BCJ5_9GAMM Length = 314 Score = 266 bits (679), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 141/308 (45%), Positives = 193/308 (62%), Gaps = 2/308 (0%) Query: 1 MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTP 60 M + LAPMEG+ D +R+L+T+ YDL ++EFVRVVDQLLP +VF PEL RT Sbjct: 1 MSIYLAPMEGLADHYLRKLITQCGGYDLAVSEFVRVVDQLLPKRVFLEQVPELHQQGRTG 60 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 +GT VRVQLLG PQ LAENA RA+ELGS G+DLN GCPSKTVN S GGA LL +PE IY Sbjct: 61 AGTPVRVQLLGSHPQALAENALRAIELGSHGLDLNFGCPSKTVNASKGGAVLLTEPESIY 120 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 +++R+A+P +S K+RLG++ +E A A++ GA E++VH RTK+QGY Sbjct: 121 AVVRSVRDALPGDQTLSAKMRLGFEDNSLMWECAHAIRDGGANEIIVHARTKQQGYTPPA 180 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNL-SRVVKY 239 W D RL IP+I NGEIW A + + C ++M+GRGA+ P L S + Sbjct: 181 Y-WHLPADFEARLGIPMIINGEIWTPADAGRAQHEANCSSIMLGRGAVRNPWLASEITGR 239 Query: 240 NEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNN 299 + + W +V L+ ++ + Q + Y R+KQWL++LR + EA LFQ +R LN Sbjct: 240 HNQKSDWSQVHQLVVQFWQEVTQQMSPRYCAGRLKQWLNHLRLSFVEAERLFQRIRRLNT 299 Query: 300 SPDIARAI 307 +I + + Sbjct: 300 IDEINQVL 307 >UniRef50_A4AAB0 tRNA-dihydrouridine synthase C n=6 Tax=Gammaproteobacteria RepID=A4AAB0_9GAMM Length = 328 Score = 261 bits (666), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 133/295 (45%), Positives = 187/295 (63%), Gaps = 6/295 (2%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 R+LLAPMEGV+D +R+LLT++ D C+TEFVRV +LLP +VFHR+CPEL N T S Sbjct: 8 RILLAPMEGVIDHTMRDLLTQLGGVDRCVTEFVRVSQELLPPRVFHRLCPELANGGCTSS 67 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 G V +Q+LG P +AENA+RA ELG+ GVDLN GCP+KTVN S GG+ +L++PE +++ Sbjct: 68 GVPVYLQILGGDPSVVAENASRAAELGAPGVDLNFGCPAKTVNRSDGGSIILREPERVHR 127 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 A R+A+P +P+SVK+RLG+DS ++ +I + A +ELV+H RT+ GYR Sbjct: 128 IVAATRQALPPSVPLSVKIRLGFDSSDRFLDIVSGIDAARPSELVIHARTRADGYRPPAY 187 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNE 241 W+ I R + +P+IANGEIW A+ SG +M+GRG L P+L R+++ + Sbjct: 188 -WEHIALARSKTRLPLIANGEIWGVGDAKLAREKSGTRDLMLGRGVLCRPDLPRLLRAAD 246 Query: 242 P-----RMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELF 291 + W E+ L KY + + Y V IKQWL YLR Y +A +F Sbjct: 247 SGVEVDALTWHEIRGYLLKYLAITLESYDARYAVNPIKQWLGYLRHYYPQAAAMF 301 >UniRef50_Q88LF2 tRNA-dihydrouridine synthase C n=38 Tax=cellular organisms RepID=DUSC_PSEPK Length = 323 Score = 256 bits (654), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 133/311 (42%), Positives = 203/311 (65%), Gaps = 8/311 (2%) Query: 1 MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTP 60 M++ LAPMEG++D+++R++LT V D C+TEF+RV D+LLP F ++ PEL+ +RT Sbjct: 1 MQIALAPMEGLVDNILRDVLTRVGGIDWCVTEFIRVCDRLLPASSFDKLAPELRQGARTA 60 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 +G +RVQLLG P LAENAA A ELG+ +DLN GCP+KTVN S GGA LLK+PEL++ Sbjct: 61 AGVPMRVQLLGSDPVCLAENAALACELGAPVIDLNFGCPAKTVNKSRGGAVLLKEPELLH 120 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 + +R AVPA++PV+ K+RLG+DS + E A A+ + G+ LVVH RTK +GY+ Sbjct: 121 AIVREVRRAVPANIPVTSKMRLGFDSPDGALECATALAEGGSAHLVVHARTKVEGYKPPA 180 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNL------S 234 W+ + ++ + +PV ANGEIW ++C +SG + +M+GRG ++ P+L + Sbjct: 181 -HWEWVARVQDVVKVPVFANGEIWTVDDWRRCREVSGAEDIMLGRGLVSRPDLGLQIAAA 239 Query: 235 RVVKYNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHV 294 R + +P M W +++ LL+++ R + + Y R+KQWL+ L + Y EA LF + Sbjct: 240 RDGRDYQP-MSWHDLLPLLREFWRQAQAKLSPRYAPGRMKQWLAMLTRSYPEAVVLFAEL 298 Query: 295 RVLNNSPDIAR 305 R ++ I+R Sbjct: 299 RREDDCARISR 309 >UniRef50_D0J1P6 Dihydrouridine synthase, DuS n=7 Tax=cellular organisms RepID=D0J1P6_COMTE Length = 347 Score = 255 bits (651), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 139/318 (43%), Positives = 197/318 (61%), Gaps = 9/318 (2%) Query: 1 MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTP 60 MR+LLAPMEG+LD ++R++LT V D C++EF+R+ LLP KV+ R PEL+N SRT Sbjct: 1 MRLLLAPMEGLLDFVLRDVLTRVGGADRCVSEFIRISGSLLPDKVYLRTMPELRNGSRTL 60 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 +G VR QLLG P +AENAA LG G+DLN GCP+K VN GGGA+LL+DPE I Sbjct: 61 AGVPVRAQLLGSDPVSMAENAANLARLGPEGIDLNFGCPAKVVNRHGGGASLLQDPEQIV 120 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 + A+R AVPA +PVS K+RLG++ E A A++Q GA E+VVH RTK GYR Sbjct: 121 RVVDAVRRAVPAQMPVSAKMRLGFNDRALMTECAQAMEQGGACEIVVHARTKLDGYRPPA 180 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLS----RV 236 W+ I IR+ + + V+ANGEIW + A +C +SGCD +M+GRG + P L+ R Sbjct: 181 Y-WEEIPRIREAVGVNVVANGEIWTVEEALRCREVSGCDDLMLGRGIVADPGLALAVRRA 239 Query: 237 VKYNE----PRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQ 292 V++ + W +V +Q++ + + R+KQWL+ +R+ + EA +Q Sbjct: 240 VEHGSVSAVAGIDWLALVPQVQRFWHMVCEDLEPRQRAGRLKQWLNLMRRRFPEAELAYQ 299 Query: 293 HVRVLNNSPDIARAIQAI 310 VR + I+ +QA+ Sbjct: 300 EVRTQTDQRAISDWVQAL 317 >UniRef50_Q47C15 Dihydrouridine synthase, DuS n=1 Tax=Dechloromonas aromatica RCB RepID=Q47C15_DECAR Length = 319 Score = 254 bits (649), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 130/294 (44%), Positives = 186/294 (63%), Gaps = 2/294 (0%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 R+LLAPMEG+ D L+R +LT++ YD I EFVRV + +LP K + RICPEL N S+T + Sbjct: 3 RILLAPMEGLADDLLRGVLTDIGGYDWGICEFVRVSNSVLPAKTYERICPELLNGSKTRT 62 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 GT +RVQLLG P ++AENA R V L GVDLN GCP+ TV GG+ LL +PEL+ + Sbjct: 63 GTPMRVQLLGSDPHFMAENARRLVALNPAGVDLNFGCPAPTVFRHRGGSALLGEPELLNE 122 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 A+R VPAH+P + K+RLG D + + A A++ AG EL+VHGRT+ GYR Sbjct: 123 ITSAVRSVVPAHIPFTAKMRLGIDDTSRAIDCAQALEAAGINELIVHGRTRSDGYRPP-A 181 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNE 241 W+ I +R ++IP+IANGE+W + + C +GC +M+GRGA+ P L+R V+ E Sbjct: 182 RWEWIDKVRDAIHIPLIANGEVWTVEDFRNCQLATGCADIMVGRGAVADPLLARRVR-GE 240 Query: 242 PRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVR 295 W E+ + Y ++ ++ R+KQWL+ +R+ Y EA L++ +R Sbjct: 241 ETGGWDEIRPTVATYWLGVRKKVVPVHAGGRVKQWLAMMRRNYPEAEVLYERLR 294 >UniRef50_Q1N033 Putative uncharacterized protein n=1 Tax=Bermanella marisrubri RepID=Q1N033_9GAMM Length = 321 Score = 249 bits (637), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 128/311 (41%), Positives = 193/311 (62%), Gaps = 9/311 (2%) Query: 1 MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTP 60 M++ LAPMEG++D +R LLT +D C+TEF+RV QLLP + F RICPE + +TP Sbjct: 1 MQLSLAPMEGLVDVHMRTLLTRGGYFDYCVTEFLRVTTQLLPERSFRRICPESDHQWKTP 60 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 +GT V +QLLG P +AENA RA ELG+ V++N GCPS+ VNG GGA LL+ P+ I+ Sbjct: 61 AGTPVHLQLLGSDPVAMAENACRAAELGAPVVNINFGCPSRFVNGRCGGAYLLQFPDQIH 120 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 +++R+A+P H+P++ K+RLG+ A A++ AG ++ +H RTK QGYR Sbjct: 121 TILESVRKALPEHVPLTAKMRLGFKDDALALANAQAMESAGVRDICIHARTKVQGYRPP- 179 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 W I +I+Q++ +P+IANGEIW+ + + C A S C+ VM+GRGA+ P L+ +K Sbjct: 180 AHWHQIKNIKQQVKVPIIANGEIWNRRDYEACKAASHCEHVMLGRGAVADPELAATIKGC 239 Query: 241 EPRMPW----PEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRV 296 E W +++ +L + Q Y RIKQW S+L+ Y++A LF+ ++ Sbjct: 240 ESSDTWIHRLHDLIWMLDELVEFGGQS----YAHGRIKQWFSFLKMSYEQAVPLFESLKT 295 Query: 297 LNNSPDIARAI 307 + + I R + Sbjct: 296 MKEASAIRRFL 306 >UniRef50_A3JG66 Putative uncharacterized protein n=3 Tax=Gammaproteobacteria RepID=A3JG66_9ALTE Length = 335 Score = 249 bits (637), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 128/300 (42%), Positives = 188/300 (62%), Gaps = 6/300 (2%) Query: 1 MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTP 60 MR++LAPMEG++D+ +RE LT+V D C+TEF+RV +LP ++F++ PEL N S T Sbjct: 1 MRIILAPMEGLVDAPIRETLTKVGGIDRCVTEFIRVTHGMLPPRIFYKYAPELHNNSLTR 60 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 G V VQLLG P +A + A+A ELG+ VD+N GCP+KTVN GG L+++PEL++ Sbjct: 61 VGVPVAVQLLGSDPHMMARHGAKAAELGATQVDINFGCPAKTVNKHKGGCVLMREPELMH 120 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 + A+R+AVPA + V+ K+RLG+D A A+ AGA E+V+H R+K GY+ Sbjct: 121 EITAAVRQAVPADILVTAKMRLGYDDRSMGVACAQALDAAGAGEIVIHARSKTDGYKPPA 180 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 W+ I R+ + VIANG+I+ +C +SGCD VMIGRG + P+L+R ++ + Sbjct: 181 Y-WEEIAKAREAVKAKVIANGDIFTVADYWRCREVSGCDDVMIGRGLVARPDLARQIRAS 239 Query: 241 E-----PRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVR 295 + M WPE +AL+Q+Y + Y RIKQW++YLR+ + EA L+ R Sbjct: 240 QRGESIELMTWPEALALVQEYGYALQGWLEDKYVTGRIKQWMNYLRQGFSEAEALWPQAR 299 >UniRef50_Q4FQ57 Possible tRNA-dihydrouridine synthase n=24 Tax=Gammaproteobacteria RepID=Q4FQ57_PSYA2 Length = 350 Score = 245 bits (626), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 134/317 (42%), Positives = 191/317 (60%), Gaps = 16/317 (5%) Query: 4 LLAPMEGVLDSLVRELLTEV-----NDYDLCITEFVRVVDQLLPVKVFHRICPELQNASR 58 LLAPMEG+ D L+R++LT++ YD ++EF+RV +LP VF++ PEL + ++ Sbjct: 34 LLAPMEGLTDPLMRQILTQIAADLGRPYDWSVSEFIRVTQHVLPAHVFYKYVPELHHDAK 93 Query: 59 TPSGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPEL 118 T SGT + +QLLG Q +AENAA A ELG+ +D+N GCP+KTVN GG+ LL +PE+ Sbjct: 94 TASGTSIHIQLLGSEAQLMAENAAHACELGAPAIDINFGCPAKTVNSHRGGSVLLDEPEV 153 Query: 119 IYQGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRA 178 +Y A+R+AVPA++PVS K+RLG+ + +I A+ +GA L +H RTK QGY+ Sbjct: 154 MYDIISAVRQAVPANIPVSAKIRLGYTDTSRMDDIRGAIAASGADWLTIHARTKTQGYKP 213 Query: 179 EHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK 238 W I L IPVIANGEIW+ + AQ CMA SG +M+GRGA+ P+L V Sbjct: 214 PAY-WDKIQAFNS-LKIPVIANGEIWNSEHAQNCMAQSGTTHLMLGRGAVTRPDLIAQVD 271 Query: 239 -------YNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELF 291 N P + W +++A ++ + + D L V R KQWL+ L K Y EA L+ Sbjct: 272 CGLDSEMSNTPTLLWQDLIAHQIRFLQGAAKSDIVL--VGRYKQWLAMLTKGYSEAKILW 329 Query: 292 QHVRVLNNSPDIARAIQ 308 ++ N I A+Q Sbjct: 330 DSIKREKNKTAIISALQ 346 >UniRef50_Q21L63 Dihydrouridine synthase, DuS n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21L63_SACD2 Length = 318 Score = 244 bits (624), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 137/319 (42%), Positives = 191/319 (59%), Gaps = 15/319 (4%) Query: 1 MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTP 60 MR+ LAPMEGV+D +R +++ V D+C+TEF+RV D +LP K+F + CPEL S TP Sbjct: 1 MRIFLAPMEGVVDHHMRNIISSVGGVDICVTEFIRVTDHVLPNKIFKKACPELDENSETP 60 Query: 61 S-----GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKD 115 + VRVQLLG P LA NAARA ELG+ +DLN GCP+KTVN GGA LL + Sbjct: 61 ALYRGAHCPVRVQLLGSNPSALAANAARAAELGAVAIDLNFGCPAKTVNRHKGGACLLDE 120 Query: 116 PELIYQGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQG 175 + ++ A+R+A PA PV+ K+RLG+ + + A A++ AGA EL VH R+K G Sbjct: 121 TDTVFDIVNAVRKATPASTPVTAKIRLGYLNRDSYLRNAKAIEAAGANELCVHARSKTDG 180 Query: 176 YRAEHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSR 235 Y+ W IGDIR L+IPV+ANGEIW + ++C S C M+GRG L P+L+ Sbjct: 181 YQPPAY-WHYIGDIRDNLSIPVVANGEIWSLEDFKRCAEQSKCSDFMLGRGLLAKPDLAL 239 Query: 236 VVK-------YNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEAT 288 +K +N + W EV A ++ Q Y R+KQWL YL+++Y EA Sbjct: 240 EIKQYMAGEAFNP--LSWDEVCAHVRTLFERNCQSYPPKYLGNRVKQWLFYLQRQYSEAA 297 Query: 289 ELFQHVRVLNNSPDIARAI 307 ELF+ ++ + + RA+ Sbjct: 298 ELFEAIKRERDEQALRRAL 316 >UniRef50_Q9JUP6 tRNA-dihydrouridine synthase C n=23 Tax=Neisseriaceae RepID=DUSC_NEIMA Length = 333 Score = 241 bits (615), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 128/319 (40%), Positives = 193/319 (60%), Gaps = 9/319 (2%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 R++LAPM+G++D ++R+LLT + YD C++EFVR+ + + + PE+ N ++T S Sbjct: 14 RIILAPMQGLVDDVMRDLLTRIGGYDECVSEFVRITHTVHSRATWLKYVPEIANGNKTFS 73 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 GT VQLLG +A NA AV G+ +DLN GCP+ TVN GGA LLK+PELI+ Sbjct: 74 GTPCTVQLLGSDADNMAANALEAVRFGADKIDLNFGCPAPTVNRHKGGAILLKEPELIFH 133 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 K +RE +PAH+P++ K+RLG++ E A A+ + GA L VH RTK +GY Sbjct: 134 IVKTLRERLPAHIPLTAKMRLGYEDKSPALECACAIAEGGACGLTVHARTKAEGYEPP-A 192 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNE 241 W+ I IR ++IPV ANG+++ Q ISGC++VM+GRGA+ P+L+R +K E Sbjct: 193 HWEWIRKIRDSVDIPVTANGDVFSLQDYIGIKTISGCNSVMLGRGAVIRPDLARQIKQYE 252 Query: 242 PRMPWPEV-VALLQKYTR------LEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHV 294 P + A + K+ R L K+ + Y +AR+KQWL ++K +D A LF V Sbjct: 253 NGGPVKDTDFAEVSKWIRQFFELCLTKEANNK-YPIARLKQWLGMMKKTFDPAQTLFDRV 311 Query: 295 RVLNNSPDIARAIQAIDIE 313 R + ++ ++ R + A + E Sbjct: 312 RTVKDADEVRRILNAFEHE 330 >UniRef50_Q884C6 tRNA-dihydrouridine synthase C n=13 Tax=Proteobacteria RepID=DUSC_PSESM Length = 317 Score = 238 bits (606), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 125/300 (41%), Positives = 188/300 (62%), Gaps = 6/300 (2%) Query: 1 MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTP 60 M++ LAPMEG++D ++R+ LT+V D C+TEF+RV ++L+P F++ E N ++T Sbjct: 1 MQIALAPMEGLVDDILRDALTKVGGIDWCVTEFIRVSERLMPAHYFYKYASEFHNGAKTD 60 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 +GT +R+QLLG P LAENAA A ELG+ +DLN GCP+KTVN S GGA LLK+PEL++ Sbjct: 61 AGTPLRLQLLGSDPVCLAENAAFACELGAPVLDLNFGCPAKTVNRSRGGAILLKEPELLH 120 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 +R AVP +PV+ K+RLG+++ + + A A+ GA ++VVH RTK GY+ Sbjct: 121 TIVSQVRRAVPKDIPVTAKMRLGYENTDGALDCARALADGGAAQIVVHARTKVDGYKPPA 180 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 W+ I I++ + +PV+ANGEIW + ++C I G +MIGRG + P+L+R + Sbjct: 181 -HWEWIARIQEVVKVPVVANGEIWTVEDWRRCREICGARDIMIGRGLVARPDLARQIAAA 239 Query: 241 EP-----RMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVR 295 + M W E+ +L+ + + T + R+KQWL L K Y EAT +F +R Sbjct: 240 QKGEEVVPMTWAELQPMLRTFWQACLVKMTLVQAPGRLKQWLVLLTKSYPEATLMFNTLR 299 >UniRef50_C5TM05 tRNA-dihydrouridine synthase C n=5 Tax=Neisseriaceae RepID=C5TM05_NEIFL Length = 321 Score = 232 bits (592), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 117/319 (36%), Positives = 196/319 (61%), Gaps = 7/319 (2%) Query: 1 MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTP 60 M+++LAPM+G++D ++R+LLT + +D C++EFVR+ + + + PE+ +A+RT Sbjct: 1 MQLILAPMQGLVDDVMRDLLTRIGGFDECVSEFVRITHTVHSRATWLKYVPEIAHANRTT 60 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 +GT VQLLG + +A NA AV G+ +DLN GCP+ TVN GGA LLK+P+LIY Sbjct: 61 AGTPCTVQLLGSDAENMAVNALEAVRFGADKIDLNFGCPAPTVNKHKGGAVLLKEPDLIY 120 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 +R+ +P H+P++ K+RLG++ E A A++ GA L VH RTK +GY Sbjct: 121 HIVHTLRQRLPQHIPLTAKMRLGYEDKSLALECASAIENGGACALTVHARTKVEGYEPP- 179 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 W+ + IR +NIPV ANG++++ Q ++SGC++VM+GRGA+ P+L+R +K Sbjct: 180 AHWEWVRKIRDAVNIPVTANGDVFNLQDYLDIKSVSGCNSVMLGRGAVIRPDLARQIKQY 239 Query: 241 E-----PRMPWPEVVA-LLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHV 294 E + EV + ++Q + + + Y V+R+KQWL ++KE+++A LF + Sbjct: 240 ENGETVKDTDFAEVSSWIVQFFDLCLAKEASNKYPVSRLKQWLGMMKKEFEQAQVLFDRI 299 Query: 295 RVLNNSPDIARAIQAIDIE 313 R + + ++ + + + + E Sbjct: 300 RAIKEADEVKQILLSFEQE 318 >UniRef50_Q1QZQ6 Dihydrouridine synthase, DuS n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QZQ6_CHRSD Length = 340 Score = 221 bits (562), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 131/293 (44%), Positives = 179/293 (61%), Gaps = 9/293 (3%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNAS-RTP 60 R+ LAPMEGV+D + RELL+ D +TEFVRVVD LP +VF R CPEL+ A+ T Sbjct: 8 RIGLAPMEGVIDVVTRELLSADGALDWTVTEFVRVVDTRLPARVFLRHCPELETAACATA 67 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 SGT V +QLLG P+ LA NA RA LG+ VDLN GCP+KTVN GGA+LL+ PE ++ Sbjct: 68 SGTPVHLQLLGSDPEALAANAVRAQALGARQVDLNFGCPAKTVNRHDGGASLLRQPERVH 127 Query: 121 QGAKAMREAV-PAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAE 179 +A+ EA+ P + V+ K+RLG+D A+A + GA LVVH RT+ +GYR Sbjct: 128 TVVRAVAEALAPLGIAVTAKIRLGFDDKHVALACAEAAESGGAAHLVVHARTRREGYRPP 187 Query: 180 HIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY 239 W+ IG I+ RL+IPVIANG+IW + + +SGC VM+GRG L P L+R +K+ Sbjct: 188 -AHWEWIGRIQARLSIPVIANGDIWTLEDYWKARTLSGCADVMLGRGMLADPWLARRIKH 246 Query: 240 NE------PRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDE 286 + P PW +L Y + + V+ +KQWL+ +R ++E Sbjct: 247 WQRHGEMLPATPWSARAEILHAYAQRMRAHLPEKVVVSLLKQWLNQMRGRHEE 299 >UniRef50_A6W1E8 Dihydrouridine synthase DuS n=1 Tax=Marinomonas sp. MWYL1 RepID=A6W1E8_MARMS Length = 335 Score = 214 bits (545), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 108/295 (36%), Positives = 170/295 (57%), Gaps = 5/295 (1%) Query: 5 LAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGTL 64 +APMEGV+D +R LL++ D ++EF+RV +P F + PE N +RT Sbjct: 23 VAPMEGVMDHTMRALLSQTGGMDYLVSEFIRVTQYPIPAATFKHLVPENTNKARTTHNHP 82 Query: 65 VRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAK 124 V QLLG + +AE+A A + G+ +D+N GCP+K VNG GGG+ LL+ P+ +Y Sbjct: 83 VHTQLLGSNAELMAESALNATKAGAKHIDVNFGCPAKRVNGHGGGSVLLQTPDALYDIMS 142 Query: 125 AMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHIDWQ 184 A+R+ +P+ +PVS K+RLG++ F+ A++ AG L +HGRTK+ GY+ W+ Sbjct: 143 AIRDTLPSDIPVSAKIRLGFEDEALLFDNVAAIEAAGVGTLTIHGRTKKDGYKPP-ARWE 201 Query: 185 AIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIP----NLSRVVKYN 240 IG+I+ + + V+ANG+I D +S +C +I+GC MIGRG+LN P + + + Sbjct: 202 KIGEIQAKTKMTVVANGDITDTKSLLRCQSITGCQHFMIGRGSLNNPFVFQQIRKELNGQ 261 Query: 241 EPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVR 295 E + L Y+R ++ + + R+KQW +LR E+ E E Q +R Sbjct: 262 ESTADTTNLNRLFISYSRELQEHYDEVAALGRLKQWCGHLRFEFKEIKENLQTLR 316 >UniRef50_A6GHV6 Dihydrouridine synthase family protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GHV6_9DELT Length = 321 Score = 208 bits (529), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 125/302 (41%), Positives = 174/302 (57%), Gaps = 10/302 (3%) Query: 8 MEGVLDSLVRELLTEV----NDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGT 63 M+GV D RE LT + + LC++EFVRV Q + +VF R CPEL +T +G Sbjct: 1 MDGVTDGSYRECLTALFGGRSGISLCVSEFVRVTRQPVVERVFLRHCPELARGGKTRAGV 60 Query: 64 LVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGA 123 V VQLLG P W+A A AV LG+ G+DLN GCP+KTVN S GGATLLKDP + Sbjct: 61 PVFVQLLGGEPHWMARAAETAVALGAPGIDLNFGCPAKTVNSSDGGATLLKDPCRVEAVT 120 Query: 124 KAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHIDW 183 +A+R AVPA LPV+VK+R+GW+ EIA A + GA+ L +HGRT+ Q Y+ +D+ Sbjct: 121 RAVRAAVPAELPVTVKIRVGWEDPSPVVEIARAAEAGGASWLTIHGRTRRQLYK-PPVDY 179 Query: 184 QAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNL-SRVVKYNEP 242 +AIG + +++ V+ANG+++ S + SGC A MIGRGA+ P L +R Sbjct: 180 EAIGRAQAAVSMAVVANGDLFGVPSLFEAAQRSGCTAFMIGRGAMGRPELFARARGTQRA 239 Query: 243 RMPWPEVVALLQKYT-RLEKQGDTGLYHVARIKQWL---SYLRKEYDEATELFQHVRVLN 298 + ALL Y L G + R+KQWL + LR + A E + ++ L+ Sbjct: 240 ALDPRPFEALLDVYADTLLASGANERNTLGRLKQWLRMAAMLRADMKLAFEQCKRLQTLD 299 Query: 299 NS 300 + Sbjct: 300 EA 301 >UniRef50_UPI00016C52C4 dihydrouridine synthase DuS n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C52C4 Length = 326 Score = 188 bits (478), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 109/277 (39%), Positives = 156/277 (56%), Gaps = 22/277 (7%) Query: 16 VRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGTLVRVQLLGQFPQ 75 +R + + +TEF+RV + P VFH PEL+ + T +G V+VQLLG Sbjct: 1 MRAVQGATGAFTYAVTEFLRVSHAVPPRHVFHDHVPELRTGAATLTGLPVQVQLLGGDSG 60 Query: 76 WLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLP 135 +AE+A RA ELG+ VD+N GCP+ TVN GGA LL+ P I + A+R A+P H+P Sbjct: 61 RMAESAVRAHELGATAVDVNFGCPAPTVNRHDGGAALLRHPLRIREIVGAIRAALPPHVP 120 Query: 136 VSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHIDWQAIGDIRQRLNI 195 VS K+RLGWD+ + E A + GA + +HGRT+ GY A I W+ IG +R+RL I Sbjct: 121 VSAKLRLGWDTLDAIHENATMAAEGGAAWITIHGRTRVAGY-APPIHWEPIGRVRERLGI 179 Query: 196 PVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVV-----------KYNEPRM 244 PV+ANG+IW + ++C ++GC M+GRGAL P L+R V + +EP Sbjct: 180 PVVANGDIWTVEDFKRCRDVTGCKHFMLGRGALADPRLARRVAAELGLVPPVEETDEP-F 238 Query: 245 PWP----EVVALLQKYTRLEKQGDTGLYHVARIKQWL 277 W +V ++ L + V+R+KQWL Sbjct: 239 DWAAQLRNLVEWSHRFDMLRSDKN-----VSRLKQWL 270 >UniRef50_A5F2I8 Putative uncharacterized protein n=2 Tax=Vibrio cholerae RepID=A5F2I8_VIBC3 Length = 157 Score = 151 bits (382), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 68/131 (51%), Positives = 90/131 (68%) Query: 167 VHGRTKEQGYRAEHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRG 226 +H RTK GY+A I W I IRQ+ +IP+IANGE+W++ Q C+ +G D++M+ RG Sbjct: 1 MHARTKAGGYKASEIKWHYIDQIRQKCSIPLIANGEVWNYADGQACIQTTGVDSLMVCRG 60 Query: 227 ALNIPNLSRVVKYNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDE 286 ALN+PNL VVK+N MPW EVV LL +YT+ E +GD G Y+ RIKQW +YLR Y + Sbjct: 61 ALNVPNLGNVVKHNHAAMPWHEVVDLLLRYTQFEVRGDKGKYYPNRIKQWFAYLRHAYPQ 120 Query: 287 ATELFQHVRVL 297 A ELF +R L Sbjct: 121 ANELFGELRTL 131 >UniRef50_Q55724 Probable tRNA-dihydrouridine synthase 1 n=34 Tax=Cyanobacteria RepID=DUS1_SYNY3 Length = 355 Score = 150 bits (378), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 110/326 (33%), Positives = 164/326 (50%), Gaps = 27/326 (8%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFH-RICPELQNASRTP 60 RVL +P+ GV D + R L+ + TE V + + H R P++ P Sbjct: 43 RVLQSPLSGVTDLVFRRLVRRYAPQAMLYTEMVSATE------IHHLRTLPQVMEID--P 94 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 + +QL P ++AE A +AV G+ VD+N GCP + GGG++LL+ P + Sbjct: 95 RENPISIQLFDCRPDFMAEAAQKAVAQGAQSVDINMGCPVNKITKKGGGSSLLRQPAVAE 154 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKF-EIADAVQQAGATELVVHGRTKEQGYRAE 179 K + AV +PV+VK RLGWD GE E A +Q AGA L +HGRT+ QGY Sbjct: 155 AIVKTVVAAV--DVPVTVKTRLGWDDGEINIVEFAQRLQDAGAQMLTLHGRTRAQGYNGR 212 Query: 180 HIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNL----SR 235 WQ I ++Q L IPVIANG+I+ ++A C+ +G D VM RG+L P L Sbjct: 213 -ARWQWIAKVKQALTIPVIANGDIFSVEAAIACLEETGADGVMCSRGSLGYPFLVGEIEH 271 Query: 236 VVKYNEPRMPWPEVVALL---QKYTRL--EKQGDTGLYHVARIKQWLSYLRKEYDEATEL 290 K E R P V L Q++ ++ E +G GL+ ++ L++ K++ A L Sbjct: 272 FFKTGEKRKA-PTVAEKLTCAQEHLQMLWEYKGQRGLFQA---RKHLAWYCKDFPGAAAL 327 Query: 291 FQHVRVLNNSPDIARAI-QAIDIEKL 315 + + +N+ + + QAI KL Sbjct: 328 REQLFQINSVQEGKDLLDQAISTAKL 353 >UniRef50_C0GJW0 TIM-barrel protein, nifR3 family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GJW0_9FIRM Length = 319 Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 101/258 (39%), Positives = 141/258 (54%), Gaps = 26/258 (10%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPE--LQNASRT 59 +V+LAP+ GV DS R L E+ C F ++ V PE L+ A T Sbjct: 11 KVILAPLAGVTDSSFRILAREMG----CALVFTEMISAKGAV-----CAPEQTLKIARFT 61 Query: 60 PSGTLVRVQLLGQFPQWLAENAARAVELGSWG----VDLNCGCPSKTVNGSGGGATLLKD 115 + +QL G P+ A RA EL + +D+N GCP K V G G G L++D Sbjct: 62 AQERPIGIQLFGSDPEIFA----RATELCNGQAPDLLDINMGCPVKKVAGKGEGCALMRD 117 Query: 116 PELIYQGAKAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQ 174 P+ Y KA+ +A A +PV+VK+R GWD E E+A AVQ+AGA + VHGRT+ Q Sbjct: 118 PDKAYAITKAVCDA--ATMPVTVKMRKGWDDSEVNAVEVALAVQEAGAAAVTVHGRTRAQ 175 Query: 175 GYRAEHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGAL-NIPNL 233 GY DW I +++ L +PV+ NG+IW+ Q AQ+ + +GCDAVM+ RG L N+ + Sbjct: 176 GYSG-RADWSVIARVKEALRVPVVGNGDIWEPQDAQRMLQQTGCDAVMLARGVLGNLWLI 234 Query: 234 SRVVKYNEPR--MPWPEV 249 R V Y E +P PE+ Sbjct: 235 RRTVHYLETGELLPEPEM 252 >UniRef50_A6DPY9 Putative uncharacterized protein n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DPY9_9BACT Length = 330 Score = 147 bits (372), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 90/254 (35%), Positives = 138/254 (54%), Gaps = 15/254 (5%) Query: 1 MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTP 60 ++ LAPMEGV L+R + + DL TEF+R+ ++ + ++ + P Sbjct: 7 FKLSLAPMEGVTHPLMRHQIAQHGGLDLLCTEFIRISSHKPSMRSLKK---QIVKSGDIP 63 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 + VQ++G + +AE+A V+ G+ VD+N GCP+K G G+ +LKDP+L Y Sbjct: 64 ----LSVQIMGNNAELMAESAKLVVDCGADAVDVNMGCPTKRAVKGGVGSAMLKDPKLCY 119 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 Q +MRE VP L S K+R G+D+ E FEI A+ +GA L VH R + Y H Sbjct: 120 QVLASMREQVPCAL--SAKIRAGFDNKEGVFEILQAIVDSGADYLAVHPRRRVDHYEG-H 176 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIP----NLSRV 236 DW+ I ++++ IPVI NG++ A + + CD VMIGRGAL+ P S+V Sbjct: 177 SDWRIISALKEKSPIPVIGNGDVRTAADAVRMFKETQCDGVMIGRGALSNPWIFLQTSQV 236 Query: 237 VKYNEPRMP-WPEV 249 + E +P W ++ Sbjct: 237 LSDQEVFIPNWEDI 250 >UniRef50_Q3A324 Dihydrouridine synthase n=10 Tax=Desulfuromonadales RepID=Q3A324_PELCD Length = 342 Score = 145 bits (366), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 101/316 (31%), Positives = 161/316 (50%), Gaps = 23/316 (7%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 +LLAPM G+ D R LL L TE + +L + + TPS Sbjct: 31 ILLAPMAGITDLACR-LLMRPYGIGLAFTEMISANGLVLGGDATRDLL------ASTPSD 83 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 + +QL G+ P++L++ A + VE +DLN GCP K V SG G+ L++ P + Q Sbjct: 84 RPLGIQLFGENPKYLSQ-ACKQVESHGDLIDLNIGCPVKKVVRSGAGSALMQTPARVAQI 142 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGEKKF-EIADAVQQAGATELVVHGRTKEQGYRAEHI 181 AMR A HLP++VK+R GWD+ F EIA +Q G + +H RT+ QG+ Sbjct: 143 IAAMRRAT--HLPLTVKIRAGWDASHINFLEIAHIAEQEGVDAITLHPRTRSQGFSGS-A 199 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSR-VVKYN 240 +W I ++++R IPVI +G+I++ Q AQ+ + +GCDAVMIGRG P L+R ++ Sbjct: 200 NWDLIAELKRRSTIPVIGSGDIFEAQYAQRMLQQTGCDAVMIGRGCYGNPWLARDILAMR 259 Query: 241 EPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNNS 300 + + P P E++ D L H+ ++ + +D L + + L + Sbjct: 260 QGQTPAP---------VTPEERCDVALRHMELFLRFNDERKAVFDLRKHLCWYAKGLPGA 310 Query: 301 PDIARAI-QAIDIEKL 315 +I +A+ IE++ Sbjct: 311 AQFRSSINRAMSIEEM 326 >UniRef50_D1AWB1 Dihydrouridine synthase DuS n=12 Tax=Fusobacteriaceae RepID=D1AWB1_STRM9 Length = 305 Score = 138 bits (348), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 77/232 (33%), Positives = 130/232 (56%), Gaps = 15/232 (6%) Query: 1 MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTP 60 +++ APM GV D R+++ + D TE V V D+LL ++ P++ Sbjct: 3 LKIYTAPMAGVTDYTFRKIIEDFKP-DFTFTEMVSV-DKLL-----YKEVPKILKLRENN 55 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVE-LGSWGVDLNCGCPSKTVNGSGGGATLLKDPELI 119 VQ+ G+ +L + AA+ +E +G ++LNCGCP K + SG G+ L+KDP I Sbjct: 56 I-----VQIFGK-DIYLMQKAAKYIESMGVKEINLNCGCPMKKIVNSGHGSALIKDPRKI 109 Query: 120 YQGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAE 179 + A+RE + +S+K+R+G+D E EIA ++ + +++HGRT+EQ Y E Sbjct: 110 EEILTALREVLDPKTALSLKIRVGYDKPENYLEIAKIAEKLKCSNIIIHGRTREQKYSGE 169 Query: 180 HIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIP 231 DW+ I +++ +NI VI NG+I+D ++A + + + D +M+ RG L P Sbjct: 170 A-DWKYIKEVKDNVNIKVIGNGDIFDAKNAIEKIRETNVDGIMLARGILGNP 220 >UniRef50_B8GCQ5 TIM-barrel protein, nifR3 family n=6 Tax=Chloroflexi (class) RepID=B8GCQ5_CHLAD Length = 351 Score = 137 bits (346), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 104/317 (32%), Positives = 161/317 (50%), Gaps = 22/317 (6%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 ++LAPM GV DS+ R ++ + L TE HR+ L P Sbjct: 28 IVLAPMAGVTDSIFRRMILRLGGCGLVSTEMTNAASVSPKALRRHRLLDYL------PEE 81 Query: 63 TLVRVQLLGQFPQWLAENAARAVE-LGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + +Q+ G P +A NAAR VE LG+ +D+NCGCPS V G G G+ LL+D + + Sbjct: 82 RPLTMQISGNDPDLVA-NAARVVEQLGADIIDINCGCPSPKVTGGGHGSALLRDLPKMER 140 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKKF-EIADAVQQAGATELVVHGRTKEQGYRAEH 180 +A+R AV +PV++K+R GWD F E + AG L +H RT+EQGY+ + Sbjct: 141 LLRAVRAAV--QIPVTLKLRAGWDEASLNFIEAGQRAEAAGVAALTLHPRTREQGYKGQ- 197 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSR-VVKY 239 DW + +++ ++IPVI +G++ Q A + SG D VMIGRGA+ P + R V Sbjct: 198 ADWSRVAALKRAVSIPVIGSGDVVTAQDALIRLRDSGADGVMIGRGAIANPWIFRQVADL 257 Query: 240 NEPRMPWPEVVA----LLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVR 295 + R P+ A LL +Y + + + +IKQ + ++ H+R Sbjct: 258 RQGRTPFEPTPADKYHLLLEYMAIYAEELPERLALNKIKQLIG----QFYIGLPGSNHLR 313 Query: 296 V-LNNSPDIARAIQAID 311 V ++ S +A A +AI+ Sbjct: 314 VAVHTSTSLAAAQEAIE 330 >UniRef50_P96192 tRNA-dihydrouridine synthase C n=1 Tax=Azotobacter vinelandii RepID=DUSC_AZOVI Length = 309 Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 94/243 (38%), Positives = 133/243 (54%), Gaps = 6/243 (2%) Query: 1 MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTP 60 MR+ LAPMEG++D L+R+LLT V D C+TEFVRV D+LLPV F ++ PEL++ RT Sbjct: 1 MRIALAPMEGLVDELLRDLLTRVGGIDWCVTEFVRVCDRLLPVAQFEKLAPELRHGWRTR 60 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 +GT + +QLLG P LAENAA A ELG+ +DLN GCP+KT G Sbjct: 61 AGTPMHLQLLGSDPACLAENAALAAELGAPAIDLNFGCPAKTSTARGADGCCSTSRNCCM 120 Query: 121 QGAKAMREAVPAHLPVSVKVRL-GWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAE 179 + R A P + G + + A+ + G LVVH RTK +GYR Sbjct: 121 P--SSARCAGPCRRCAGDRQDAPGVRPARGRPGVRRALVEGGVAHLVVHARTKVEGYRPP 178 Query: 180 HIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY 239 W+ + +R+ + +PV AN + + C ISG + VM+G G ++ P+L+R + Sbjct: 179 -ASWEWLARVREAVAVPVYANRK--SGRRRIGCREISGVEDVMLGCGLVSRPDLARQIAM 235 Query: 240 NEP 242 P Sbjct: 236 RAP 238 >UniRef50_Q3AZ67 Dihydrouridine synthase TIM-barrel protein nifR3 n=24 Tax=Cyanobacteria RepID=Q3AZ67_SYNS9 Length = 356 Score = 135 bits (339), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 109/319 (34%), Positives = 166/319 (52%), Gaps = 25/319 (7%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 RVL +P+ GV D + R L+ + L TE V L + + +L+ A P Sbjct: 38 RVLQSPLAGVTDKIFRGLVRRWSRDSLLFTEMVNATS--LELGHGYGKMDDLK-AEEGP- 93 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + VQL P +A A RA + G++ +D+N GCP + + GGG+ L++DP L Q Sbjct: 94 ---IAVQLFDHRPHAMAHAARRAEQAGAFLIDINMGCPVRKIAKKGGGSGLIRDPNLATQ 150 Query: 122 GAKAMREAVPAHLPVSVKVRLGW-DSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 +A+ +AV +PV+VK RLGW S +Q AGA L +HGRT+EQG++ + Sbjct: 151 ILEAVVDAV--SIPVTVKTRLGWCGSSSDPITWCRQLQNAGAQMLTLHGRTREQGFKGQ- 207 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK-- 238 +W AI +++Q L IPVIANG+I A +C+ I+G D VM+GRG + P L ++ Sbjct: 208 ANWNAIAEVKQALTIPVIANGDINSPTDALRCLEITGADGVMVGRGTMGSPWLVGQIEAA 267 Query: 239 -YNEPRMPWPEVVALL-----QKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQ 292 N P P+ A L Q + + +G GL +AR + +S+ + A +L + Sbjct: 268 FMNRPIPATPDSGARLHLAKEQLHDLVSSRGSHGLL-IAR--KHMSWTCTGFPGAPQL-R 323 Query: 293 HVRVLNNSPDIARAIQAID 311 H + +PD A Q ID Sbjct: 324 HSLMRATTPD--DAYQLID 340 >UniRef50_Q2RTR9 Dihydrouridine synthase TIM-barrel protein nifR3 n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RTR9_RHORT Length = 362 Score = 135 bits (339), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 86/230 (37%), Positives = 127/230 (55%), Gaps = 7/230 (3%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 ++LAPM GV DS R L +DY ++ V + L + + P L + Sbjct: 14 IMLAPMAGVTDSPFRRL---AHDYGCPLSWTEMVASRELLRERARGVDPRLGGGAEAGRA 70 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 VQL G P +AE A R G+ +D+N GCP + V G GG+ L++D L + Sbjct: 71 GPFAVQLAGCDPLIMAEAARRVEGAGAELIDINMGCPVRKVVGGLGGSALMRDLPLAARI 130 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGEKK-FEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 +A+ AV LPVS+K+RLGWD + E+A + AG + L VHGRT+ Q Y Sbjct: 131 LEAVVGAV--TLPVSLKMRLGWDDASRNAVELARLAESAGISRLTVHGRTRAQMYDG-RA 187 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIP 231 DW AIG +++ +++PVIANG++ + A++ +A++G D VMIGR AL P Sbjct: 188 DWPAIGLVKRAVSLPVIANGDVTNLSEAREILAVTGADGVMIGRAALGAP 237 >UniRef50_UPI0001BC5FF0 nitrogen regulation protein NIFR3 n=1 Tax=Fusobacterium sp. D12 RepID=UPI0001BC5FF0 Length = 322 Score = 132 bits (331), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 85/239 (35%), Positives = 127/239 (53%), Gaps = 14/239 (5%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQL--LPVKVFHRICPELQNASRT 59 ++ +AP+ GV D R +L E DL TE V D L L K +I R Sbjct: 3 KIFIAPIAGVTDYTYRGILEEFQP-DLLFTEMVSS-DALAALNDKTISQIL-------RL 53 Query: 60 PSGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELI 119 SG VQL G+ + + +A +LG +D+N GCP K V SG G+ LLK PE I Sbjct: 54 RSGN--GVQLFGKDTEKMIYSAKYIEKLGVKNIDINAGCPMKRVVHSGHGSALLKSPEKI 111 Query: 120 YQGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAE 179 + +RE + +S+K+R+G+D E +IA ++AG + + VHGRT+ Q Y Sbjct: 112 KEILFTLREQLEESTKLSIKIRVGYDRPENYLQIAKIAEEAGCSHITVHGRTRAQLYTG- 170 Query: 180 HIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK 238 DW I +I++ + IPVI NG+I+ ++A++ + SG D VM+ RG P L R ++ Sbjct: 171 LADWSLIKEIKEHVTIPVIGNGDIFTAEAAKEKIEDSGVDGVMLARGIFGNPWLIRDIR 229 >UniRef50_C6JNK3 Dihydrouridine-tRNA ligase n=4 Tax=Fusobacterium RepID=C6JNK3_FUSVA Length = 320 Score = 131 bits (330), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 81/272 (29%), Positives = 136/272 (50%), Gaps = 17/272 (6%) Query: 1 MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTP 60 +++ AP+ GV D R +L E DL TE V + + + ++ L+ Sbjct: 2 IKIYTAPIAGVTDYTYRGILKEFKP-DLLFTEMVSINALEVACEKTLKVILRLREGDS-- 58 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 VQL G+ + + E+A LG +D+N GCP K + +G GA L++ PEL+ Sbjct: 59 ------VQLFGKDIKKMVESAKFVESLGVKHIDINSGCPMKKIVNNGYGAALMEQPELVK 112 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 +R A+ +S+K+R+G+ + EIA Q+ G + +HGRT+EQ Y + Sbjct: 113 AMLSEVRSALNDKTDLSIKIRVGYKESKNPVEIAKIAQETGCKHITIHGRTREQMYTGK- 171 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 DW I ++++ ++IPVI NG+I+ + A++ + SG D +M+ RG P L R ++ Sbjct: 172 ADWSIIKEVKESVDIPVIGNGDIFTAEDAKERVDYSGVDGIMLARGIFGNPWLIRDIR-- 229 Query: 241 EPRMPWPEVVALLQKYTRLEKQGDTGLYHVAR 272 + E +L T +EK D + H R Sbjct: 230 ----EYFEYGKILHPVTDIEKI-DMAIKHTKR 256 >UniRef50_B9JW92 Nitrogen regulation protein n=4 Tax=Rhizobiales RepID=B9JW92_AGRVS Length = 332 Score = 131 bits (329), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 89/242 (36%), Positives = 128/242 (52%), Gaps = 12/242 (4%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 RV+LAPM GV D R+L + L +TE V + + L+ A TP Sbjct: 20 RVVLAPMSGVTDLPFRQLAFR-HGAGLVVTEMVASRELVFNAA---ESWSRLKGAGLTPH 75 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 VQL G+ P W+AE A A G+ +D+N GCP+K V G G+ L+++PE+ Sbjct: 76 ----MVQLAGRDPHWMAEAAKIAEANGADIIDINMGCPAKKVIGGYAGSALMREPEIALA 131 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 +A +AV +PV+VK+RLGWDS +++ Q AG + VHGRT+ Q Y Sbjct: 132 MIEATVKAVS--IPVTVKMRLGWDSDSINAPDLSRRAQDAGVQAITVHGRTRMQFYEGR- 188 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 DW AI +R + IP+IANG+I AQ+ + SG DA+M+GR P + V+ + Sbjct: 189 ADWDAIAAVRDAIYIPLIANGDIDTLGDAQEILRRSGADAIMLGRACQGRPWHAGVLAGH 248 Query: 241 EP 242 P Sbjct: 249 AP 250 >UniRef50_Q5ZRM0 Nitrogen regulation protein n=6 Tax=Legionella RepID=Q5ZRM0_LEGPH Length = 329 Score = 130 bits (326), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 73/234 (31%), Positives = 120/234 (51%), Gaps = 11/234 (4%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 R++ P+ G + R+L C++E +D + H+ + + R P+ Sbjct: 20 RLIQGPLAGYSCAPFRDLFNIYTPPAYCVSEMCSAID------ILHKHSSQSRYIYRAPT 73 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + Q+ G P LAE AA+ LG+ +D+NCGCP + G G+ LL+DP+ + Sbjct: 74 EKFLAYQISGNEPHVLAEAAAKLQSLGADLIDINCGCPKSKIRKKGAGSALLEDPQKLIA 133 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 +R A+ +P+++K+R+ + EK +A ++ AGA L+VHGR + Y Sbjct: 134 IISRVRAAIS--IPLTIKIRI--QNNEKDLTLAKQIEDAGAHALIVHGRRWTEDYDIP-C 188 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSR 235 +WQ I +I+ +NIPVI NG+I + S ++ + IS CD MI R P L R Sbjct: 189 NWQQIANIKNAVNIPVIVNGDINNIFSLRKALEISACDGFMISRAGTGKPWLYR 242 >UniRef50_B3QWF2 TIM-barrel protein, nifR3 family n=26 Tax=Bacteroidetes/Chlorobi group RepID=B3QWF2_CHLT3 Length = 402 Score = 130 bits (326), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 103/323 (31%), Positives = 163/323 (50%), Gaps = 27/323 (8%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 V+LAPME V D R L D+ TEF+ D L+ V + ++ + R Sbjct: 56 VILAPMEDVTDPSFRRLCKHYG-ADIVFTEFISS-DGLIRHAVKSKRKLDVFDDERP--- 110 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 V +Q+ G + + E A A G +D+N GCP+K V G G G+ LL P+L+ + Sbjct: 111 --VAIQIFGNQIEPMVEAAQMAEAAGPDFIDINYGCPAKKVAGKGAGSGLLCQPDLMEKI 168 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQ---AGATELVVHGRTKEQGYRAE 179 A+ +AV LPV+ K R+GWD E+ I D V++ G L +HGRT+ Q Y+ Sbjct: 169 TDAVVKAV--RLPVTAKTRIGWD--ERSISILDTVRRLEGCGIQALSIHGRTRAQMYKGR 224 Query: 180 HIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY 239 DW I ++ IP+I NG+IW + A++ +G D VMIGRGA+ P L R K+ Sbjct: 225 -ADWSWIARAKEVATIPIIGNGDIWTAEDAKRMFDETGVDGVMIGRGAIGNPFLFREAKH 283 Query: 240 ------NEPRMPWPEVVALLQKY--TRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELF 291 + P+ E VA+ ++ LE++G+ Y V +++ S K +++ Sbjct: 284 LIQTGEHLPQATHRERVAVAIRHLEMSLERKGEK--YGVLEMRRHYSTYLKGLPNVSKVR 341 Query: 292 QHVRVLNNSPD-IARAIQAIDIE 313 ++ V N P+ I A++ ++E Sbjct: 342 DYL-VRENDPNLIVEALRRFEVE 363 >UniRef50_B0UHM8 TIM-barrel protein, nifR3 family n=6 Tax=Rhizobiales RepID=B0UHM8_METS4 Length = 358 Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 105/312 (33%), Positives = 152/312 (48%), Gaps = 21/312 (6%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 LLAP+ GV D +R + VV +++ + R E A G Sbjct: 30 ALLAPLSGVTDLHLRRIARRCGASA--------VVSEMVAAEDLARGSAE---ARLRAEG 78 Query: 63 TLVR---VQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELI 119 VR VQL G P+W+AE A A G+ +D+N GCP+K V G G+ L++D + Sbjct: 79 EGVRPHVVQLAGCDPRWMAEGARLAEANGADVIDVNMGCPAKKVTGGEAGSALMRDLDHA 138 Query: 120 YQGAKAMREAVPAHLPVSVKVRLGWDSGEKKF-EIADAVQQAGATELVVHGRTKEQGYRA 178 + A+REAV +PV+VK+RLGWD + ++A + G + + VHGRT++Q Y A Sbjct: 139 ARLLAAVREAVA--VPVTVKMRLGWDDASRNAPDLARRAEALGLSAVTVHGRTRQQFY-A 195 Query: 179 EHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK 238 DW AI + + ++IPV+ANG++ A+ C+A SG AVMIGR A+ P L V Sbjct: 196 GRADWAAIRAVVEAVSIPVVANGDVGSLAEARACLAESGAAAVMIGRAAVGRPWLVGAVA 255 Query: 239 YNEPRMPWPEVVALLQKYTRLEK-QGDTGLYHVAR-IKQWLSYLRKEYDEATELFQHVRV 296 P P + Q E +G LY VA ++ +L D A L R Sbjct: 256 AGLRGAPAPALTRAAQADLAGEHYEGLLALYGVAMGVRHARKHLAAYADHAGGLAAGERA 315 Query: 297 -LNNSPDIARAI 307 L + D A A+ Sbjct: 316 RLVTTTDPAEAL 327 >UniRef50_B0TBQ2 Dihydrouridine synthase tim-barrel nifr3 family protein n=3 Tax=Clostridiales RepID=B0TBQ2_HELMI Length = 331 Score = 127 bits (319), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 92/242 (38%), Positives = 135/242 (55%), Gaps = 14/242 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 V+ APM GV D R +L E + L TE + D+ L +R E+ + T Sbjct: 20 VVAAPMAGVTDKPFRTVLKE-HRCPLVYTEMIS--DKAL--TYANRNTMEILDI--TGEA 72 Query: 63 TLVRVQLLGQFPQWLAENAARAVEL-GSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + VQ+ G P +AE AAR VE G+ +D+N GCP+ + +G GA LLK P+L Sbjct: 73 RPIAVQIFGSEPAVMAE-AARIVEAAGASIIDINMGCPAPKIVRNGEGACLLKTPDLAVD 131 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 A+A+ AV +PV+VK+R+GW SG E+A ++ G L VHGRT+E Y + Sbjct: 132 IAEAVVRAV--QVPVTVKMRIGWSSGRIVAPELAPRLEAVGVQALTVHGRTREMFYSGQA 189 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIP-NLSRVVKY 239 DW I + ++++IPVI NG++W+ A + + +GC AVMIGRG + P SR+V + Sbjct: 190 -DWSVIAETVRQVSIPVIGNGDVWEPDDALRMLVETGCAAVMIGRGCMGNPWIFSRLVHW 248 Query: 240 NE 241 E Sbjct: 249 AE 250 >UniRef50_A4RVX6 Predicted protein n=2 Tax=Ostreococcus RepID=A4RVX6_OSTLU Length = 371 Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 84/248 (33%), Positives = 127/248 (51%), Gaps = 26/248 (10%) Query: 8 MEGVLDSLVRELLTE--VNDYDLCITEFVRVVDQLL----PVKVFHRICPE-------LQ 54 MEG+ D+ R L +D EF+R+ L P K+ +C Sbjct: 1 MEGLGDARFRVALAANGAGGFDEACREFIRIPGALPNGADPTKLVKNLCANYDADELRFN 60 Query: 55 NASRTPSGTLVRVQLLGQFPQWLAENAAR--AVELGSWGVDLNCGCPSKTVNGSGGGATL 112 +R P G Q++G P WL E AAR A E + +DLNCGCP+ V G G G++L Sbjct: 61 ATARVPLG----AQIMGSEP-WLLELAARHLATEKSAPRIDLNCGCPANVVTGKGAGSSL 115 Query: 113 LKDPELIYQGAKAMREAV---PAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHG 169 L+DPE +Y KA+ + AH V++K+R G+D E A ++AGA + +H Sbjct: 116 LRDPEYVYACVKAVADGARGSGAH--VTMKLRSGYDDSSLLRENLLAAREAGARFVSLHA 173 Query: 170 RTKEQGYRAEHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALN 229 RT+ QGY +W+ I + L+IPV+ NG++ Q A + + +S D +M+GRGA+ Sbjct: 174 RTRAQGYSG-RANWEEIAFAKDVLDIPVLGNGDVTSPQRAAELLRVSDADGIMLGRGAVQ 232 Query: 230 IPNLSRVV 237 P + R + Sbjct: 233 DPLIFRRI 240 >UniRef50_D2RLJ7 TIM-barrel protein, nifR3 family n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RLJ7_ACIFE Length = 331 Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 87/263 (33%), Positives = 130/263 (49%), Gaps = 18/263 (6%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLP-VKVFHRICPELQNASRTPS 61 + LAPM GV D R + E+ D ++E V L K F + P Sbjct: 19 IALAPMAGVTDLPFRVICRELG-ADYTVSEMVSAKALLFKNPKTFAML-------EVDPR 70 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 V +QL G P+ L + A E G+ +D N GCP + +G G+ L+KDPE Y Sbjct: 71 EHPVAIQLFGSVPEELVKGAKIVAEHGADIIDFNMGCPVHKIVANGEGSALMKDPERAYA 130 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKK-FEIADAVQQAGATELVVHGRTKEQGYRAEH 180 A+ +AV PV+VK R GWD + EIA ++AG + VHGRT+ Q Y + Sbjct: 131 CLAALVDAV--DRPVTVKFRAGWDEDHRNAVEIARLAEKAGVAAVAVHGRTRGQFYSGK- 187 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY- 239 DW I +++ ++IPV+ NG+++ Q A +A + CD VMI RGA P + R V+ Sbjct: 188 ADWDIIRQVKEAVSIPVLGNGDVFTAQDALDLLAATHCDGVMIARGAQGNPWIFREVQAV 247 Query: 240 ----NEPRMPWPEVVALLQKYTR 258 P + E A+++++ R Sbjct: 248 LAGKTIPPVTLEERFAMVRRHLR 270 >UniRef50_Q1IVR5 Dihydrouridine synthase TIM-barrel protein nifR3 n=2 Tax=Acidobacteria RepID=Q1IVR5_ACIBL Length = 370 Score = 125 bits (315), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 93/286 (32%), Positives = 142/286 (49%), Gaps = 19/286 (6%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 +LAPM GV D++ R + + L +TEF + R R Sbjct: 34 TVLAPMAGVTDTVFRRFIRNLGGCGLMMTEFTSADGLARMREAKARRYLTFYGNERP--- 90 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 + QL G + LA+ A +LG VDLN GCPSK V GG+ LL+D I Sbjct: 91 --ISAQLFGSDAETLADAAKVVQDLGFDLVDLNLGCPSKRVVKCNGGSGLLRDLPQIKVI 148 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGEKKF-EIADAVQQAGATELVVHGRTKEQGYRAEHI 181 +++R+AV +P +VK R GW+ E F E+A + G + +H RT+EQGY + Sbjct: 149 FESVRKAV--TIPFTVKFRAGWNEKELVFLELAKLAENCGLNAVAMHARTREQGYSGQA- 205 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVV---- 237 +W I D++Q + IPVI NG+I + A +A +GCDAVMIGR A + P + R + Sbjct: 206 NWGWIADLKQVVKIPVIGNGDIRTPEDAAAMVAKTGCDAVMIGRSAASNPWIFRQIEQYT 265 Query: 238 ---KYNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYL 280 +Y+ P + +++ Y R+ + DT ++KQ+ S+ Sbjct: 266 ATGRYDLPTN--EDRYEMIRMYFRMLIENDTQGAE-GKMKQFASWF 308 >UniRef50_P44965 tRNA-dihydrouridine synthase B n=20 Tax=Pasteurellaceae RepID=DUSB_HAEIN Length = 330 Score = 125 bits (315), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 88/239 (36%), Positives = 129/239 (53%), Gaps = 13/239 (5%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 RVLLAPM G+ D R L L +E + Q V+H +L+ A Sbjct: 11 RVLLAPMAGITDQPFRRLCAYYGA-GLTFSEMMSTNPQ-----VWHTEKSKLRLAHSEDL 64 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 G L VQ+ G P +A+ AA VE G+ +D+N GCP+K VN G+ LL+ P+L+ Sbjct: 65 G-LNAVQIAGSDPLEMAQAAAINVEYGAQIIDINMGCPAKKVNRKLAGSALLQFPDLV-- 121 Query: 122 GAKAMREAVPA-HLPVSVKVRLGWDSGEKK-FEIADAVQQAGATELVVHGRTKEQGYRAE 179 K +RE V A ++PV++K+R GWD + +I +Q G L VHGRT+ + E Sbjct: 122 -EKILREVVSAVNVPVTLKIRTGWDKSNRNCVQIGKIAEQCGIQALTVHGRTRACLFEGE 180 Query: 180 HIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK 238 ++ I ++Q + IPVIANG+I + A+ + +G DA+MIGR AL P L + V+ Sbjct: 181 -AEYDNIKAVKQAIAIPVIANGDIDSARKAKFVLNYTGADAIMIGRAALGNPWLFQAVE 238 >UniRef50_A0LJ96 Putative TIM-barrel protein, nifR3 family n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LJ96_SYNFM Length = 352 Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 83/235 (35%), Positives = 127/235 (54%), Gaps = 12/235 (5%) Query: 6 APMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGTLV 65 APM GV DS R L+ + + TE V + + + +C + + P G + Sbjct: 27 APMAGVTDSAYRALMADFGAA-MVTTEMVSIQGLVRNQRATLDLCRQ-----QHPVGVPL 80 Query: 66 RVQLLGQFPQWLAENAARAVELGSWG-VDLNCGCPSKTVNGSGGGATLLKDPELIYQGAK 124 VQ+ G+ P +AE AAR VE G +D+N GCP + V G GA LLKDP+ + + Sbjct: 81 AVQVFGRDPAVMAE-AARLVEQGGAALIDINAGCPVRKVVRQGAGAILLKDPDRLAAMVE 139 Query: 125 AMREAVPAHLPVSVKVRLGWDSGEKKFE-IADAVQQAGATELVVHGRTKEQGYRAEHIDW 183 A++ AV +PV+VK+R+GWD+ +A + AG + VHGRT Q Y + DW Sbjct: 140 AVKRAV--SVPVTVKIRVGWDNAANGVAGLARQLVSAGVDAITVHGRTAAQMY-SGRADW 196 Query: 184 QAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK 238 I +++ + +PVI NG++ + A++ + +GCD VMIGR +L P L V+ Sbjct: 197 SRIAEVKAAVAVPVIGNGDVTSPELAERMIHETGCDGVMIGRASLGNPWLFAVIS 251 >UniRef50_D1BLD4 TIM-barrel protein, nifR3 family n=12 Tax=cellular organisms RepID=D1BLD4_VEIPT Length = 328 Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 81/231 (35%), Positives = 124/231 (53%), Gaps = 11/231 (4%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 + +LAPM GV D R LL + + L TE V + + H + +++ R Sbjct: 16 QAILAPMAGVSDIAYR-LLAKEHGAALVCTEMVSAMGIKYKNERTHELL-RIEDVERP-- 71 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 V +Q+ G P+ +A A G+ VD+N GCP K V SG G+ L+K+P+L + Sbjct: 72 ---VSMQIFGSNPEAIALGAKVVANAGADIVDINMGCPVKKVVTSGDGSALMKNPDLAAR 128 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 A +PV+VK+R+GWDS + A ++ G + VHGRTKEQ Y H Sbjct: 129 --VAEAAVEAVDVPVTVKMRIGWDSDSINVVDFAKRIESTGVAAIAVHGRTKEQMYSG-H 185 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIP 231 DW I +++ +++PV+ NG+I + + A+Q + +GCDAVM+GRGA P Sbjct: 186 ADWSYIKAVKEAVSVPVLGNGDIVEPEDAKQMLDETGCDAVMVGRGAQGNP 236 >UniRef50_C0WDP2 Putative uncharacterized protein n=1 Tax=Acidaminococcus sp. D21 RepID=C0WDP2_9FIRM Length = 321 Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 83/238 (34%), Positives = 121/238 (50%), Gaps = 13/238 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLP-VKVFHRICPELQNASRTPS 61 V+LAPM GV D R + E N D ++E V L K F + + P Sbjct: 11 VVLAPMAGVTDLPFRVICRE-NGADYTVSEMVSAKALLYKNQKTFAMLTID-------PK 62 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 +QL G P LA G+ +D+N GCP + +G G+ L+KDP+ +Y Sbjct: 63 EHPTAIQLFGSVPSELAAAGKIVESRGADMIDVNMGCPVHKIVSNGEGSALMKDPDKVYA 122 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKKFE-IADAVQQAGATELVVHGRTKEQGYRAEH 180 A+ +AV +PV+VK R GWD K IA ++AG + + VHGRT+ Q Y+ + Sbjct: 123 ILAALVDAVS--IPVTVKFRAGWDEAHKNAAVIAQMAEKAGVSAVCVHGRTRAQFYQGK- 179 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK 238 DW I +++ + IPV+ NG+I+ + A + +GCD VMI RGA P + R VK Sbjct: 180 ADWDIIRAVKESVGIPVLGNGDIFHAEDALRMKEETGCDGVMIARGAEGNPWIFRDVK 237 >UniRef50_C8WHM7 TIM-barrel protein, nifR3 family n=2 Tax=Coriobacteriaceae RepID=C8WHM7_EGGLE Length = 330 Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 95/269 (35%), Positives = 131/269 (48%), Gaps = 22/269 (8%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASR-TP 60 R+LLAPM GV D R L E DL TE V K + ++ R P Sbjct: 12 RLLLAPMAGVSDEAFRTLCRE-QGADLTYTEMV-------SAKGLSYANEKTRHLLRLAP 63 Query: 61 SGTLVRVQLLGQFPQWLAENAA---RAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPE 117 V VQL G P +A AA R + +D+N GCP++ + G G+ L+KDP Sbjct: 64 GEDQVAVQLFGHEPDTMAAQAAWIEREMGQSLAYLDINMGCPARKIVSKGDGSALMKDPA 123 Query: 118 LIYQGAKAMREAVPAHLPVSVKVRLGWDSG-EKKFEIADAVQQAGATELVVHGRTKEQGY 176 L +A+R AV PV+VK R GW G E E A ++ AGA + VHGR EQ Y Sbjct: 124 LAASIVRAVRAAVS--RPVTVKFRRGWAEGDETAPEFARRMEDAGACAIAVHGRYAEQLY 181 Query: 177 RAEHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNL--- 233 R +W AI +++ +++PV+ NG++ A +GCDAVMI R A P L Sbjct: 182 RG-RAEWGAIARVKEAVSVPVVGNGDVRSGADAVAITERTGCDAVMIARAAEGNPWLFAQ 240 Query: 234 SRVVKYNEPRMPWPEV---VALLQKYTRL 259 ++ EP P V +AL +++ RL Sbjct: 241 AKAALAGEPEPDGPTVEERIALARRHARL 269 >UniRef50_B9ZKT6 TIM-barrel protein, nifR3 family n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZKT6_9GAMM Length = 330 Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 96/265 (36%), Positives = 138/265 (52%), Gaps = 21/265 (7%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPV-KVFHRICPELQNASRTPS 61 V LAPM GV D +R L+ ++E V +L K HR+ + R Sbjct: 13 VFLAPMAGVSDRPLR-LIARRLGASAAVSEMVTSDTRLWGSDKSRHRLDHRQEPRPRI-- 69 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 VQLLG P+ LAE A V G+ +DLN GCP+K V G+ LL +PE + + Sbjct: 70 -----VQLLGNEPEPLAEAARENVRRGADVIDLNLGCPAKKVCSKAAGSALLGEPERVRE 124 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKKFE-IADAVQQAGATELVVHGRTKEQGYRAEH 180 A+ E+V +PV++K+RLG D E IA Q G L VHGRT+ YR Sbjct: 125 LLTALVESV--EVPVTLKMRLGLDRERVNAETIAGIAQDCGIAMLTVHGRTRADAYRGT- 181 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALN---IPNLSRVV 237 D++AI + + ++IPV+ANG++ D SA++ +AISG +MIGRGA +P R Sbjct: 182 ADYEAIARVVRAVSIPVLANGDVVDIGSARRALAISGATGLMIGRGAQGRPWLPGQIRAS 241 Query: 238 KYNEPRMP----WPEVVALLQKYTR 258 EP +P W +AL++++ R Sbjct: 242 LAGEP-VPADPAWDARLALIEEHLR 265 >UniRef50_B9MMW4 TIM-barrel protein, nifR3 family n=3 Tax=Clostridia RepID=B9MMW4_ANATD Length = 328 Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 93/313 (29%), Positives = 162/313 (51%), Gaps = 24/313 (7%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 ++ LAPM G D + R L + D+ +TE + +L + S + Sbjct: 7 KIFLAPMAGFTDKVFRRLCSRFG-ADVTVTEMISSKALVLGSAKTKDLI------SFSEE 59 Query: 62 GTLVRVQLLGQFPQWLAENAA-RAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 + VQ+ G P+ +A++ E +D+N GCP + SG G L+K+P L Sbjct: 60 EKIRGVQIFGNDPEVMAQSVKILQDEFEYHFIDINMGCPVPKLVRSGEGCALMKNPSL-- 117 Query: 121 QGAKAMRE-AVPAHLPVSVKVRLGWDSGEKKF-EIADAVQQAGATELVVHGRTKEQGYRA 178 AK + E A + PVSVK+R G+D E A +Q++GA+ + VHGRT+ Q Y Sbjct: 118 -AAKIVEEVAKVSRKPVSVKIRKGFDDENINAPEFAYILQESGASFVTVHGRTRAQLYSG 176 Query: 179 EHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK 238 + DW+ I ++++L IPVIANG+I D++SA++ ++ D++MIGR AL P + +K Sbjct: 177 KA-DWEIIRKVKEKLKIPVIANGDIVDFESAKKAYEVTRADSIMIGRAALGNPWVFLQIK 235 Query: 239 ------YNEPR-MPWPEVVALLQKYTRL-EKQGDTGLYHVARIKQWLSYLRKEYDEATEL 290 Y E + +P ++ ++ +T+L ++GD V ++ LS+ K + A ++ Sbjct: 236 EGFEKGYVETKVLPHMKIRVAIEFFTQLCSEKGDK--MAVLEARKHLSFFVKGIENAAKI 293 Query: 291 FQHVRVLNNSPDI 303 + +NN+ ++ Sbjct: 294 RDKINRINNATEL 306 >UniRef50_B9NQS6 NifR3 family protein n=3 Tax=Rhodobacteraceae RepID=B9NQS6_9RHOB Length = 364 Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 82/233 (35%), Positives = 127/233 (54%), Gaps = 17/233 (7%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFV---RVVDQLLPVKVFHRICPELQNASRT 59 VLLAPM G+ D R+L+ + ++E V +V V+ + +++N + Sbjct: 51 VLLAPMAGITDRPFRDLVMRFG-AGMVVSEMVASQEMVQAKPGVRERAELSADVENTA-- 107 Query: 60 PSGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELI 119 VQL G+ W+AE A + + G+ +D+N GCP+K V G+ LLK P+ Sbjct: 108 -------VQLAGREAHWMAEAARQVADRGARVIDINMGCPAKKVTNGYSGSALLKTPDHA 160 Query: 120 YQGAKAMREAVPAHLPVSVKVRLGWD-SGEKKFEIADAVQQAGATELVVHGRTKEQGYRA 178 +A+ AV +PV++K RLGWD S ++A Q AG + +HGRT+ Q Y+ Sbjct: 161 LTLIEAVVAAV--DIPVTLKTRLGWDDSLLNAPDVARRAQDAGIQMVTIHGRTRCQFYKG 218 Query: 179 EHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIP 231 DWQAIG +++ +++PVIANG+I +A+ + SG D VM+GRGA P Sbjct: 219 R-ADWQAIGAVKEAVSVPVIANGDITGPGAARTALDQSGADGVMVGRGAQGRP 270 >UniRef50_Q8PX79 NifR3-like protein n=3 Tax=Methanosarcina RepID=Q8PX79_METMA Length = 323 Score = 125 bits (313), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 86/239 (35%), Positives = 131/239 (54%), Gaps = 14/239 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 +LLAPM V + R LL DL TE + V D LL + L + P G Sbjct: 17 LLLAPMADVTNLAFR-LLCRRYGADLTYTEMINV-DALLN-ESRKSFIKGLSSEEDRPFG 73 Query: 63 TLVRVQLLGQFPQWLAENAARAVE--LGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 VQL+G P L + AA +E +D+N GCP++ + G+G G+ LL PEL+Y Sbjct: 74 ----VQLVGGCPDKL-KRAALFIEEEYRPEIIDVNMGCPARCITGAGCGSALLNSPELVY 128 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 + E++ PVS K+RL EK EIA +++AGA+ + VHGRT Q Y Sbjct: 129 SIILELTESLDT--PVSAKIRL-LGREEKTLEIARLIEKAGASAVTVHGRTAAQMYSGNS 185 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY 239 + + I ++ L+IPVIANG++ D +SA++ + ++GCD +MIGR A+ P + + +++ Sbjct: 186 -NLEGIRAVKNELSIPVIANGDVKDEESAERTLELTGCDGLMIGRAAMGNPFIFKKIRH 243 >UniRef50_C9KMX2 tRNA-dihydrouridine synthase n=3 Tax=Veillonellaceae RepID=C9KMX2_9FIRM Length = 322 Score = 125 bits (313), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 88/250 (35%), Positives = 133/250 (53%), Gaps = 15/250 (6%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 V LAPM GV D+ R + ++ LC E V Q + + R LQ+ Sbjct: 12 VFLAPMAGVTDTAYRIIAHDMG-CPLCFAEMVS--SQGIHFRN-ERTLAMLQSEKEERP- 66 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGV-DLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + +Q+ P+ AE AA LG+ + D N GCP+ + +G G+ L++DPE + Sbjct: 67 --LAMQIFANTPEMAAEAAAFVEALGTADILDFNMGCPAPKIVKNGEGSALMRDPERAFA 124 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKKF-EIADAVQQAGATELVVHGRTKEQGYRAEH 180 A+R+AV +PV+VK+R GWD+ E+A ++AG + VHGRT+EQ Y Sbjct: 125 ILSAIRKAV--KMPVTVKMRKGWDAASVNVVEMAKLAEEAGVDAIAVHGRTREQFYTG-R 181 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSR-VVKY 239 DW+ IG++++ + IPVIANG++ + + A++GCD VMIGR A P + R Y Sbjct: 182 ADWEIIGEVKRAVKIPVIANGDVRTFDDLDKIRAVTGCDGVMIGRAAQGNPWIFRQFTHY 241 Query: 240 NEP--RMPWP 247 E R+P P Sbjct: 242 LETGERLPGP 251 >UniRef50_C8W3U6 TIM-barrel protein, nifR3 family n=8 Tax=Clostridia RepID=C8W3U6_DESAS Length = 322 Score = 124 bits (310), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 81/231 (35%), Positives = 126/231 (54%), Gaps = 11/231 (4%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 RV+ APM G+ D R L E +C TE + DQ L + + L TP Sbjct: 12 RVISAPMAGITDRAYRILAKEAGCGLVC-TEMIS--DQAL-LYGNPKTNILLDCTGETPP 67 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + +Q+ G P+++A A+ G+ +D+N GCP+ + +G GA L++ PEL + Sbjct: 68 ---ISMQIFGSSPEYMARAASITEARGASIIDINMGCPTPKIVKNGEGAALMRKPELAQK 124 Query: 122 GAKAMREAVPAHLPVSVKVRLGWD-SGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 + ++V +PV+VK+R GWD S E+A ++AGA + VHGRT+ Q Y + Sbjct: 125 IISDVVQSV--RVPVTVKIRKGWDESFPNAVEMALLAEEAGAKAVTVHGRTRSQFYSGKA 182 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIP 231 DW I +++ + IPVI NG+I + + A + + +GCDAVMIGR +L P Sbjct: 183 -DWDIIKSVKKAVTIPVIGNGDIREPRDAVRMLMHTGCDAVMIGRASLGNP 232 >UniRef50_Q1RH84 Probable tRNA-dihydrouridine synthase n=59 Tax=Alphaproteobacteria RepID=DUS_RICBR Length = 326 Score = 123 bits (309), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 79/231 (34%), Positives = 124/231 (53%), Gaps = 12/231 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 ++LAPM GV D R L+ L ++E + ++ + + C +Q+ Sbjct: 13 IILAPMSGVTDLEFRRLVKRFG-AGLVVSEMIASRAMIVESRQSLQKCSIMQD-----DA 66 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 T VQL G P +AE A ++G+ +DLN GCP+K V G+ L++D L Sbjct: 67 TSACVQLAGCEPNVIAEAAKMNEDMGAKIIDLNFGCPAKKVVNGYSGSALMRDEGL---A 123 Query: 123 AKAMREAVPA-HLPVSVKVRLGWDSGEKKF-EIADAVQQAGATELVVHGRTKEQGYRAEH 180 AK AV A +PV+VK+R+GWD K +A +++G + VHGRT+ Q Y + Sbjct: 124 AKIFEAAVKAVKIPVTVKMRMGWDDQTKNAPTLAKIAERSGIQMVTVHGRTRCQFYSG-N 182 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIP 231 DW+ I ++++ + IPVIANG+I ++ A++ + S D VM+GRGA P Sbjct: 183 ADWEFIKNVKEAVKIPVIANGDITNFAKAKEALEKSSADGVMVGRGAYGKP 233 >UniRef50_A9NE09 tRNA-dihydrouridine synthase n=2 Tax=Mollicutes RepID=A9NE09_ACHLI Length = 336 Score = 123 bits (308), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 64/142 (45%), Positives = 91/142 (64%), Gaps = 5/142 (3%) Query: 92 VDLNCGCP-SKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVSVKVRLGWDSGE-K 149 +D+N GCP K G+ GA+L+KDP+ IY KA++E V PV+VK+R GWDS Sbjct: 97 IDINMGCPVPKVAIGAQAGASLMKDPQKIYDIVKAIKEKVSK--PVTVKIRSGWDSESVN 154 Query: 150 KFEIADAVQQAGATELVVHGRTKEQGYRAEHIDWQAIGDIRQRLNIPVIANGEIWDWQSA 209 E+A +++AGA+ + VH RT+ QGY E D I +++ ++IPVI NG I D +SA Sbjct: 155 AVEVAKMIEKAGASLITVHARTRAQGYSGEP-DLDVIKAVKEAVSIPVIGNGNIVDGKSA 213 Query: 210 QQCMAISGCDAVMIGRGALNIP 231 + + +GCDAVMIGR +L P Sbjct: 214 KHMLEYTGCDAVMIGRASLGNP 235 >UniRef50_P41504 Probable tRNA-dihydrouridine synthase n=93 Tax=Alphaproteobacteria RepID=DUS_RHILP Length = 317 Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 85/231 (36%), Positives = 122/231 (52%), Gaps = 12/231 (5%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 RV+LAPM GV D REL L +TE V + V L+ A P Sbjct: 6 RVVLAPMSGVTDMPFRELAWRFG-AGLVVTEMVASREL---VNDTAESWSRLKAAGFRPH 61 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 VQL G+ W+AE A A + G+ +D+N GCP+K V G G+ L++DP+ Sbjct: 62 ----MVQLAGREAHWMAEAAKIAADHGADIIDINMGCPAKKVIGGYSGSALMRDPDHALG 117 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 +A +AV +PV++K+RLGWD +IA + +G + +HGRT+ Q Y Sbjct: 118 LIEATVKAVD--IPVTLKMRLGWDENSINAPDIARRAEASGIQLVTIHGRTRMQFYEGR- 174 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIP 231 DW AI +R+ +++P+IANG++ AQ+ + SG DAVMIGRG P Sbjct: 175 ADWDAIRAVREVISVPLIANGDVETAHDAQEILRRSGADAVMIGRGCQGRP 225 >UniRef50_Q6F288 TRNA dihydrouridine synthetase n=3 Tax=Mollicutes RepID=Q6F288_MESFL Length = 325 Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 80/241 (33%), Positives = 125/241 (51%), Gaps = 13/241 (5%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLP-VKVFHRICPELQNASRTP 60 +++ PM GV + R L+++ DL E V V K F + E + + Sbjct: 11 KLVQGPMAGVSNPPFR-LISKEKGADLVCAEMVSVEGMTHNNKKTFSMLAVEKKEHPMSM 69 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPS-KTVNGSGGGATLLKDPELI 119 V+ +W+ EN + +DLN GCP+ K S G++LLK PELI Sbjct: 70 QIFGNDVESFIVATKWIDENVDCDI------IDLNIGCPAPKVAVRSASGSSLLKTPELI 123 Query: 120 YQGAKAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRA 178 Y KA+ E PV+ K+RLGWD E++ +++AGA+ + VHGRT+ + Y Sbjct: 124 YDIVKAVVENTSK--PVTAKIRLGWDKESVNAVEVSKLIEKAGASGITVHGRTRSEFYSG 181 Query: 179 EHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK 238 H DW+ I ++++ +NIPVI NG++ D SA+ + ++GCD VMI RG P + R + Sbjct: 182 -HADWEKIKEVKEAVNIPVIGNGDVIDGPSAKAMLELTGCDGVMISRGCQGNPWIFREIA 240 Query: 239 Y 239 + Sbjct: 241 H 241 >UniRef50_C7GZ00 tRNA-dihydrouridine synthase n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7GZ00_9FIRM Length = 336 Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 77/230 (33%), Positives = 119/230 (51%), Gaps = 13/230 (5%) Query: 4 LLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGT 63 L+AP+ G D+ VR + E L +E V + K + R G Sbjct: 18 LMAPLAGFTDNAVRTIALEFG-AGLVYSEMVSAKGLIYEQKNTEELLD-----FRGADG- 70 Query: 64 LVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGA 123 + +Q+ G P +A G+ VD+N GCP + + SG GA L+K P++IY Sbjct: 71 FIAIQIFGSDPDAVAHGIQCIENKGNAIVDINMGCPMQKIVKSGSGAALMKRPDIIYD-- 128 Query: 124 KAMREAVP-AHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 +++AV PV+ K+R+GWD+ + A A++ AGA+ + VHGRT +Q Y + Sbjct: 129 -MVKDAVKITQKPVTAKIRIGWDNNNINAVDCAKAIESAGASAVAVHGRTAKQKYEG-SV 186 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIP 231 + I ++Q ++IPVI NG+I + A + M +GCD VMIGRGA+ P Sbjct: 187 NRDVIASVKQSVSIPVIGNGDIKSAKEALEFMDETGCDMVMIGRGAIGKP 236 >UniRef50_Q6SFW7 NifR3/Smm1 family protein n=1 Tax=uncultured marine bacterium 578 RepID=Q6SFW7_9BACT Length = 322 Score = 121 bits (304), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 79/232 (34%), Positives = 126/232 (54%), Gaps = 13/232 (5%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPV-KVFHRICPELQNASRTP 60 +VLLAPM G D R + E L +E V + LL K HR+ + ++P Sbjct: 11 KVLLAPMAGTSDKPFRMICRE-QGAALTTSEMVVMQKHLLNTNKSKHRLDFR---SEQSP 66 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 + +Q+ G Q LAE+A +A+E G+ +D+N GCP+K V G+ L+K+ +L+ Sbjct: 67 ----ISIQIAGSESQELAESAKQALEFGADIIDINMGCPAKKVCNKAAGSALMKNEKLVE 122 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKF-EIADAVQQAGATELVVHGRTKEQGYRAE 179 KA+ AV ++PV++K+R GW+ K IA + G L +HGRT+ Q Y + Sbjct: 123 DIIKAVVNAV--NIPVTLKMRTGWNEENKNAPTIAKIAEDNGIKMLAIHGRTRAQKYNGD 180 Query: 180 HIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIP 231 ++ + I+ ++IPV+ANG+I Q A++ + +G DAVM+GR P Sbjct: 181 -AEYDTVKKIKGIVSIPVVANGDITSAQKAKKVLDYTGADAVMLGRATQGNP 231 >UniRef50_Q6MRF1 Transcription regulator homolog yacF n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MRF1_BDEBA Length = 337 Score = 121 bits (304), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 77/235 (32%), Positives = 118/235 (50%), Gaps = 23/235 (9%) Query: 4 LLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVV------DQLLPVKVFHRICPELQNAS 57 +LAPM G+ D R + ++ D + +TE V D+ L + F + S Sbjct: 13 VLAPMAGITDHAFRTFIKKL-DASVVVTELVSASGIEYKSDRTLKLMSF--------DES 63 Query: 58 RTPSGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPE 117 + P G +QL G+ P+ +A A A G VDLN GCP V G G+ +LKDP Sbjct: 64 QRPIG----IQLFGEEPEIVARAAQVAEADGCDFVDLNFGCPVPKVVKKGAGSAILKDPA 119 Query: 118 LIYQGAKAMREAVPAHLPVSVKVRLGWDSGEKK-FEIADAVQQAGATELVVHGRTKEQGY 176 + + ++ A+ +P+++K+R GWD+ + EI + G + + +HGRT+ Q Y Sbjct: 120 AVQKMVSTVKAAI--KIPLTIKIRTGWDANSRNATEICNIAYNEGVSWVAIHGRTRAQSY 177 Query: 177 RAEHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIP 231 DW I D++ IP++ NG+I + A + SGCD VMIGRG L P Sbjct: 178 TG-LADWDFIADVKANTKIPILGNGDILTPRQANLRLQQSGCDGVMIGRGCLKNP 231 >UniRef50_C1FNC8 Dihydrouridine synthase n=35 Tax=cellular organisms RepID=C1FNC8_CLOBJ Length = 323 Score = 121 bits (303), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 94/321 (29%), Positives = 149/321 (46%), Gaps = 44/321 (13%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 V LAPM G D RE+ E+ L TE V +C + N + Sbjct: 11 NVFLAPMAGFTDIAFREICKELG-CGLVYTEMVSAKALYYESNNTKELCV-ISNKEKP-- 66 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWG-----VDLNCGCPSKTVNGSGGGATLLKDP 116 V +QL G P+ +A AVE + +D+N GCP+ + +G G+ L+KDP Sbjct: 67 ---VALQLFGHEPEIMA----NAVEFFNNNDDVCILDVNMGCPAPKIVKNGDGSALMKDP 119 Query: 117 ELIYQGAKAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQG 175 +L + KAM++ A P++VK R G+D E A ++Q+G + +HGRT+EQ Sbjct: 120 KLASEIIKAMKKV--AKKPITVKFRKGFDKNNINAVEFAKIMEQSGVDAITIHGRTREQM 177 Query: 176 YRAEHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIP---- 231 Y + DW I ++ ++IPVI NG+++ + A + + + CD +MIGRGA P Sbjct: 178 YEGK-ADWAIISKVKNSVSIPVIGNGDVFSSEDALEMINKTDCDGIMIGRGAQGNPWIFK 236 Query: 232 NLSRVVKYNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELF 291 ++ +K P P +++ D + H K+ L Y +E+ E+ Sbjct: 237 QINEKIKGEHVYYPTP------------QERIDICINHY---KKSLEYF-EEHKAVREMR 280 Query: 292 QHVRV----LNNSPDIARAIQ 308 +HV V L N DI + Sbjct: 281 KHVAVYVKGLKNCTDIKDKVN 301 >UniRef50_B9JF02 tRNA-dihydrouridine synthase protein n=12 Tax=Alphaproteobacteria RepID=B9JF02_AGRRK Length = 342 Score = 120 bits (301), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 92/278 (33%), Positives = 140/278 (50%), Gaps = 14/278 (5%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 RV+LAPM GV D R+L L +TE V + V+ L++A P Sbjct: 28 RVILAPMSGVTDLPFRQLALRYG-AGLVVTEMVASREL---VQDTAESWARLKSAGLKPH 83 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 VQL G+ W+AE A A + G+ +D+N GCP+K V G G+ L++DP+ Sbjct: 84 ----MVQLAGREAYWMAEAAKIAADNGADIIDINMGCPAKKVIGGYSGSALMRDPDHALG 139 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 +A +AV +PV++K+RLGWD IA ++AG + +HGRT+ Q Y Sbjct: 140 LIEATVKAV--DVPVTLKMRLGWDENSINAPHIARRAEEAGIQLVTIHGRTRMQFYEGR- 196 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIP-NLSRVVKY 239 DW AI +R ++IP++ANG++ + A + + SG DAVM+GRG P + + + Sbjct: 197 ADWDAIRAVRDVISIPLVANGDVDTPEDASEILRRSGADAVMVGRGCQGRPWHAGVLAGH 256 Query: 240 NEPRMPWPEVVALLQKYTRLEKQGDT-GLYHVARIKQW 276 EP +AL L+ G+ G+ H + W Sbjct: 257 REPDRGEIADIALEHYRMMLDFYGEAVGIRHARKHLGW 294 >UniRef50_D0LJX3 TIM-barrel protein, nifR3 family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LJX3_HALO1 Length = 348 Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 102/321 (31%), Positives = 157/321 (48%), Gaps = 42/321 (13%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVR----------VVDQLLPVKVFHRICPE 52 VLLAPM V D R + E L ITEF++ VVD+L Sbjct: 18 VLLAPMAAVTDLPFRTI-CERFGVGLTITEFLKATALCDGDAEVVDKL------------ 64 Query: 53 LQNASRTPSGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATL 112 + + G VQ+ G+ + L + A A+++G+ +D+N GCP+K V GA L Sbjct: 65 ----TASLDGVRFGVQIYGREVEPLVQAAQLALDIGASLIDINMGCPAKRVVAGECGAAL 120 Query: 113 LKDPELIYQGAKAMREAVPAHLPVSVKVRLGWDSGEKKF-EIADAVQQAGATELVVHGRT 171 ++ PEL + +A+ +VP +PV+VK R GW+ + E A A+ +AGA + VHGRT Sbjct: 121 MQWPELSAELVRAVVASVPDSVPVTVKHRAGWNPLNRNAPEFACAMVEAGAQMVTVHGRT 180 Query: 172 KEQGYRAEHIDWQAIGDIRQRL--NIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALN 229 + QG+ A +D + I +R+ + +PV+ NG++ + +GCDAVMIGRGAL Sbjct: 181 RTQGF-AGSVDLEVIRRVREAVPARVPVVGNGDVVCVDDYLRMREHTGCDAVMIGRGALG 239 Query: 230 IPNLSRVVKYNEPRMPWPEVVALLQKYTRLEK--------QGDTGLYHVARIKQWLSYLR 281 P L R + +P P + ++Y + +G L H +++ ++ Sbjct: 240 NPWLFRSLHALAHGLPDPGRPDMAERYRVFCEHVALLYALKGGPKLIH--EVRKACAWYA 297 Query: 282 KEYDEATELFQHVRVLNNSPD 302 K D A QHV L SPD Sbjct: 298 KGLDGADGFRQHVWKL-RSPD 317 >UniRef50_C9XSF8 tRNA-dihydrouridine synthase n=24 Tax=Clostridia RepID=C9XSF8_CLODC Length = 322 Score = 119 bits (298), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 74/235 (31%), Positives = 122/235 (51%), Gaps = 19/235 (8%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRT-- 59 +V L+PM GV D R L+ + L TE + +C + +N + Sbjct: 11 KVFLSPMAGVTDLPFR-LICKEQGCGLLYTEMIN----------GKALCYDDENTKKMLK 59 Query: 60 --PSGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPE 117 V VQ+ G P+++ A + + +D+N GCP+ V +G G+ L+K+P+ Sbjct: 60 IEEEEHPVAVQIFGSEPEFMGRAAEIMNDYSNEILDINMGCPAPKVVKNGDGSALMKNPK 119 Query: 118 LIYQGAKAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGY 176 L + +A+ + + PV++K+R GWD EIA + G + L +HGRT+EQ Y Sbjct: 120 LAEEVLRAVVKN--SKKPVTLKIRKGWDDNSVNAVEIAKIAEDCGISALAIHGRTREQFY 177 Query: 177 RAEHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIP 231 + DW I +I++ L+IPVI NG+++ + + + +GCDA+MIGRGA P Sbjct: 178 TGK-ADWDIIAEIKKNLSIPVIGNGDVFTIEDSINMLDKTGCDAIMIGRGAQGNP 231 >UniRef50_B2A3T5 TIM-barrel protein, nifR3 family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A3T5_NATTJ Length = 327 Score = 119 bits (298), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 72/230 (31%), Positives = 118/230 (51%), Gaps = 11/230 (4%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 +++APM GV D R +L + + +C E V + K + G Sbjct: 15 IIVAPMAGVTDYPYRRILAKFSPGLIC-GEMVSAKGMVYGNKKTEEMVIHHNQ------G 67 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 Q+ G P+ +A+ A + LG +D+N GCP+ + +G G+ LLK P L + Sbjct: 68 VHYSQQIFGSDPKVMADAAVKLENLGVDSIDVNMGCPAPKIVKNGEGSALLKKPHLAQEI 127 Query: 123 AKAMREAVPAHLPVSVKVRLGWD-SGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 + + +V +LPV+VK+R G+D E+A +Q+ G L VHGRT EQ Y + Sbjct: 128 VREIVNSV--NLPVTVKIRKGFDRKSSDPLELALRLQEVGIKALAVHGRTCEQQYSGK-A 184 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIP 231 DW+ + ++ L+IPVI NG+I+ + A + ++ CD +M+GRG + P Sbjct: 185 DWEVVAKLKNYLDIPVIGNGDIFSSEDAVSALEMTACDGIMLGRGLMGNP 234 >UniRef50_A9KHE5 TIM-barrel protein, nifR3 family n=2 Tax=Clostridiales RepID=A9KHE5_CLOPH Length = 324 Score = 118 bits (296), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 89/312 (28%), Positives = 150/312 (48%), Gaps = 25/312 (8%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 ++L PM GV D R LL + DL TE V +++ Sbjct: 14 LVLGPMAGVTDLPFR-LLCKEQGADLIYTEMVSAKG------IYYNNKNTEVLLEVEEKE 66 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 V +QL G+ P ++E A R +D+N GCP V +G G+ L+ PE I + Sbjct: 67 RPVALQLFGEDPYIMSEMAKRIEHRNFDFLDINMGCPVPKVVNNGEGSALMLKPERIGEI 126 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 A+ +A+ PV+VK+R G+ E+A ++Q+G + VHGRT+EQ Y E Sbjct: 127 VSAISKAIKK--PVTVKIRKGFTKDNINAVEVAKVIEQSGGAAIAVHGRTREQYYSGE-A 183 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY-- 239 DW I +++ ++IPVI NG++ + ++ M+ +GCDAVMI RG P K+ Sbjct: 184 DWDIIKAVKEAVSIPVIGNGDVQTPEDVKRMMSYTGCDAVMIARGVRGNPWFFSQAKHYL 243 Query: 240 ------NEPRMPWPEVVALLQKYTRL--EKQGDTGLYHVARIKQWLSYLRKEYDEATELF 291 +P + PEV+ ++ ++ RL E +G+ H +++ +++ Y ++ +L Sbjct: 244 NTGEILAKPSV--PEVIEMILRHGRLAIEVKGEFTAMH--EMRKHVAWYTMGYPKSAKLR 299 Query: 292 QHVRVLNNSPDI 303 V + D+ Sbjct: 300 NQVNEIETYEDL 311 >UniRef50_Q2IG49 Dihydrouridine synthase TIM-barrel protein nifR3 n=4 Tax=Anaeromyxobacter RepID=Q2IG49_ANADE Length = 352 Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 81/241 (33%), Positives = 121/241 (50%), Gaps = 11/241 (4%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 R LAP+ GV D R + + TE V + H R P Sbjct: 11 RYFLAPLAGVSDRPFRAICRRMG-ASFAYTEMVSAHG------LMHGALQTSSYLDREPD 63 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 VQ+ P LA A AV+ G+ +D+N CP K V GSG GA + +DP + + Sbjct: 64 EDPFAVQIFASEPDVLARGAVVAVQAGAGMIDVNMACPVKKVCGSGAGAAMGRDPRKVEE 123 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKK-FEIADAVQQAGATELVVHGRTKEQGYRAEH 180 +A+R AVP +PV+VK+R GWD GE ++A A + GA + +HGRT+ Q Y + Sbjct: 124 AVRAIRAAVP--VPVTVKIRAGWDEGEVNCVDVARAAEAGGAAAVALHGRTRSQLYSGK- 180 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 W+ + ++Q + IPV+ +G++W A + +GCDAV++ RGA P + R +K Sbjct: 181 ARWELVRAVKQAVAIPVLGSGDVWTAGDAVRMREETGCDAVLVARGACGNPWIFRELKAI 240 Query: 241 E 241 E Sbjct: 241 E 241 >UniRef50_A8J281 Predicted protein (Fragment) n=3 Tax=cellular organisms RepID=A8J281_CHLRE Length = 241 Score = 117 bits (294), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 67/177 (37%), Positives = 98/177 (55%), Gaps = 13/177 (7%) Query: 68 QLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAM- 126 +L+G Q+LAE A R +DLNCGCP+ TV G+G G++LL+ P+ I+ AM Sbjct: 71 ELMGLAAQYLAERAPR--------IDLNCGCPANTVTGNGAGSSLLRTPQRIHDIVSAMV 122 Query: 127 ---REAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHIDW 183 R + H PVSVK+R G+D + A Q+AGA+ + +H RTK Q Y DW Sbjct: 123 AGVRASAAPHTPVSVKLRAGFDDTSLFEDNLLAAQEAGASFITLHPRTKRQCYDGA-ADW 181 Query: 184 QAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 Q L +PVI NG++ + A + +GC VM+GRGA+ P L ++++ Sbjct: 182 SLTARAVQLLRVPVIGNGDVVCVERAHALLRQTGCHGVMVGRGAVQDPLLFHRIRHS 238 >UniRef50_C1MXD1 Dihydrouridine synthase n=1 Tax=Micromonas pusilla CCMP1545 RepID=C1MXD1_9CHLO Length = 424 Score = 117 bits (294), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 87/257 (33%), Positives = 129/257 (50%), Gaps = 18/257 (7%) Query: 3 VLLAPMEGVLDS-LVRELLTEVNDYDLCITEFVRVVDQLL----PVKVFHRICPELQNA- 56 + LAPMEG+ D+ L R L V +D EF RV L K+ I +A Sbjct: 38 LFLAPMEGLGDARLRRSLSLSVGGFDEACREFTRVPGTLSQGAKAEKLLRGIALNGYDAE 97 Query: 57 --SRTPSGTLVRVQLLGQFPQWLAENAAR--AVELGSWGVDLNCGCPSKTVNGSGGGATL 112 SR + +L +G P L E+ AR A E + VDLNCGCP+ V G G G++L Sbjct: 98 ELSRPANASL-----MGSNPDLL-EHCARVLARETRAPRVDLNCGCPANVVTGKGAGSSL 151 Query: 113 LKDPELIYQGAKAMREAVPAHLPV-SVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRT 171 L+DP +Y A+R V ++K+R G+D E A Q+ GA + +H RT Sbjct: 152 LRDPNDVYACVSAIRRGCEGTGCVPTLKLRSGYDDDSLLRENLLAAQEGGAAFVTLHPRT 211 Query: 172 KEQGYRAEHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIP 231 + QGY + +W+ I + L++PVI NG++ + A+ + +GC +M+GRGA+ P Sbjct: 212 RRQGY-SGRANWKDIAIAVETLDVPVIGNGDVTSPERARALLFETGCAGIMVGRGAVQDP 270 Query: 232 NLSRVVKYNEPRMPWPE 248 + R +K W E Sbjct: 271 LVFRRIKAELRAGDWSE 287 >UniRef50_Q6M9N8 Putative uncharacterized protein n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6M9N8_PARUW Length = 297 Score = 117 bits (292), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 71/168 (42%), Positives = 96/168 (57%), Gaps = 9/168 (5%) Query: 68 QLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMR 127 QL G P + A ELG VDLNCGCP + G G+ LLK PELI + M Sbjct: 30 QLCGSKPSIAGQAAKIIEELGFDIVDLNCGCPVDKITKDGSGSGLLKTPELIGEIVCNMV 89 Query: 128 EAVPAHLPVSVKVRLGWDSGEKKFE-IADAVQQAGATELVVHGRTKEQGYRAEHIDWQAI 186 AV +PV+VK+R GWD + + E I V+QAGA + +HGRT++QGYR +W+ I Sbjct: 90 SAVK--IPVTVKIRAGWDEQQIQVENIVQIVEQAGAQAICIHGRTRQQGYRGP-ANWEYI 146 Query: 187 GDIRQRL---NIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIP 231 R +L +I +I NG++ D SA + +GCDAV++ RG L P Sbjct: 147 K--RGKLAAKSIKIIGNGDVLDGPSAAKMFCETGCDAVLVARGTLGQP 192 >UniRef50_A8ZYE4 Putative TIM-barrel protein, nifR3 family n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZYE4_DESOH Length = 326 Score = 116 bits (291), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 73/231 (31%), Positives = 116/231 (50%), Gaps = 11/231 (4%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 R +LAP+ G+ D+ R L C + +V +F++ TP Sbjct: 11 RTILAPLAGITDAPFRRLAKAAG----CALVYSEMVSSH---GLFYQSEKTGAMLRTTPE 63 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 VQ+ G P + AA G+ +D+N GC K + SG GA L+KD L + Sbjct: 64 EAPFAVQIFGGKPAVMGRAAAMVQASGAHMIDINFGCSVKKILKSGAGAALMKDLPLAAE 123 Query: 122 GAKAMREAVPAHLPVSVKVRLGWD-SGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 +A+R+AV +P+++K+R GW+ G F +A+ + G + +H RT QG+ Sbjct: 124 VIQAVRDAV--SIPLTIKMRSGWNPDGSDAFHLAEIAEARGVNAVALHPRTATQGFGGT- 180 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIP 231 DW I ++QR +PVI NG+I + A++ + +GCDAVM+GR A+ P Sbjct: 181 ADWSLIAALKQRTGLPVIGNGDIVLPEDARRMLDQTGCDAVMVGRAAIGAP 231 >UniRef50_Q31II6 Dihydrouridine synthase n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31II6_THICR Length = 320 Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 81/260 (31%), Positives = 128/260 (49%), Gaps = 14/260 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 + LAPM G+ D + R++ E + ++E V QL ++A +T + Sbjct: 12 IALAPMAGITDRVYRDICRE-SGASYAVSEMVASKKQLR-----ESAKSSTRHADKTETS 65 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 + VQLLG P+ L + A G+ +DLN GCP+K V G+ L+ PE + Sbjct: 66 PRI-VQLLGTHPEELVDAALWQQSQGADIIDLNMGCPAKKVCDVAAGSALMGQPERVADI 124 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 K++ EA+ LPV+VK+R G D EIA Q+ G + +HGRT+ + + Sbjct: 125 FKSLTEAI--DLPVTVKIRTGTDVDNINAVEIAKLAQELGLKAITIHGRTRADKFNGQ-A 181 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY-- 239 ++ I ++Q ++IPVIANG+I + AQ + +G D +MIGR A P + R + + Sbjct: 182 EYDTIKAVKQAVDIPVIANGDICSPKEAQFVLKYTGSDGIMIGRAAQGYPWIFREIAHFL 241 Query: 240 -NEPRMPWPEVVALLQKYTR 258 +P P Q TR Sbjct: 242 KTGDCLPSPSFAEFQQVMTR 261 >UniRef50_Q2LR94 TRNA-dihydrouridine synthase n=2 Tax=Deltaproteobacteria RepID=Q2LR94_SYNAS Length = 326 Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 78/231 (33%), Positives = 119/231 (51%), Gaps = 13/231 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNA-SRTPS 61 V+LAPM G+ + R + E C F ++ V+ + +++ P Sbjct: 13 VILAPMAGISNLPFRMMAREAG----CALAFTEMISANGLVRGIEKSQQYMKSCIDDKPL 68 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 G VQ+ G P +A+ + G+ +DLN GCP K V +G GA LLKDP L+ Q Sbjct: 69 G----VQIFGNDPTTMADAVRIVDDYGADLIDLNMGCPVKKVVKNGAGAALLKDPGLVSQ 124 Query: 122 GAKAMREAVPAHLPVSVKVRLGWD-SGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 +++R+A P++VK+R GW+ +IA +Q G + VH RT QG+ A Sbjct: 125 ILESVRKA--TRKPLTVKIRSGWNLQSINAVQIARIAEQQGIDAVFVHARTAVQGF-AGS 181 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIP 231 DW+ I +I+ + I VI NG++ A + + ++GCD VMIGRGAL P Sbjct: 182 ADWRIIEEIKNSVGIKVIGNGDVKSGADAWRMIKMTGCDGVMIGRGALGNP 232 >UniRef50_B1C9Q3 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C9Q3_9FIRM Length = 329 Score = 115 bits (289), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 73/228 (32%), Positives = 121/228 (53%), Gaps = 11/228 (4%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 + +LAPM GV R + E+ + I+E V K P ++ Sbjct: 17 KAILAPMAGVTTLPYRLFMREMG-CKIFISEMVSAKGLYYKSK---NTFPLMETNELEHK 72 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWG-VDLNCGCPSKTVNGSGGGATLLKDPELIY 120 ++ +Q+ G P+ + E R + ++ +D+N GCP K + +G G+ LLKD + Sbjct: 73 DSVTGIQIFGSEPEIMGEITERYINDTAFDFIDINMGCPMKKIVNNGDGSALLKDLD--- 129 Query: 121 QGAKAMREAVPAHL-PVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAE 179 + K +RE A PVSVKVRLG++ + +I A++ GA + VHGRT+EQ + E Sbjct: 130 KANKVVREVKSASSKPVSVKVRLGFNENIIE-DIIKAIEDGGADMITVHGRTREQVFTGE 188 Query: 180 HIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGA 227 +D+ I ++ ++P+IANG++ ++ A++ M +G D VMIGRGA Sbjct: 189 -VDYDGIKKAKETASVPLIANGDLDNYLKAKEKMDYTGADGVMIGRGA 235 >UniRef50_Q1NXZ7 Dihydrouridine synthase TIM-barrel protein nifR3 n=3 Tax=Deltaproteobacteria RepID=Q1NXZ7_9DELT Length = 313 Score = 115 bits (289), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 79/233 (33%), Positives = 118/233 (50%), Gaps = 16/233 (6%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 ++ AP+ G D R L E LC +E + + R ++ + T + Sbjct: 15 LVAAPLAGYSDLPFRLLCREYG-AGLCYSEMLSCHG------LVRRQPATIEMLATTAAE 67 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 + +QL G P+ + E AA L G+D+N GCP + V G GA L++DPEL Sbjct: 68 RPLLMQLFGAEPEVMGEAAAILSRLPIDGIDINMGCPVRKVVKKGAGAALMRDPEL---- 123 Query: 123 AKAMREAVPA---HLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRA 178 A A+ AV A LPV+VK+R GW+ + + A + GA + +H RT G+ Sbjct: 124 AAAITGAVTAAAGDLPVTVKIRSGWNHKQINAPDFARLLVAHGAAAVTIHARTWSDGFTG 183 Query: 179 EHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIP 231 DW I +++ +++PVI NG+I ++ A MA +GCD VMIGRGAL P Sbjct: 184 R-ADWAVIAAVKRAVSVPVIGNGDIGSYEQALAMMAATGCDGVMIGRGALGAP 235 >UniRef50_B6YQB2 tRNA-dihydrouridine synthase n=36 Tax=Bacteria RepID=B6YQB2_AZOPC Length = 340 Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 81/241 (33%), Positives = 122/241 (50%), Gaps = 15/241 (6%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRT-PS 61 V LAPMEGV + R L D+ TEF+ D L+ R ++Q + S Sbjct: 20 VFLAPMEGVTNVYFRSLCKSFGA-DMVYTEFISA-DALI------RHVDKIQGKLKIINS 71 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + VQ+ GQ + E A E+ +DLN GCP K + GA +L+ P+ + + Sbjct: 72 EHPIAVQIYGQDKDTMVEAARICEEMQPDFLDLNFGCPVKKIVRRNAGAGMLRVPKKMIE 131 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKKF-EIADAVQQAGATELVVHGRTKEQGYRAEH 180 + + +V ++P++VK RLGWD K ++A+ +Q G L +HGRT Q Y + Sbjct: 132 ITQQVVHSV--NIPITVKTRLGWDENSKIIVDLAERLQDTGIALLTIHGRTGSQMYSGKA 189 Query: 181 IDWQAIGDIRQ--RLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK 238 DW IG ++ R+ IP+ NG+I Q +Q G DAVMIGR ++ P + + VK Sbjct: 190 -DWNLIGAVKNNPRMYIPICGNGDIVSPQQCEQAFNRYGVDAVMIGRASIGAPWIFQEVK 248 Query: 239 Y 239 Y Sbjct: 249 Y 249 >UniRef50_A3VWV8 TRNA-dihydrouridine synthase, putative n=4 Tax=Rhodobacterales RepID=A3VWV8_9RHOB Length = 339 Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 93/252 (36%), Positives = 124/252 (49%), Gaps = 15/252 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 V LAPM G+ D R ++ L ++E V +++ K R EL S Sbjct: 13 VFLAPMAGITDLPFRTVVAGFG-AGLVVSEMV-ASQEMVQAKPSARGKAELGFGIENTS- 69 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTV----NGSGGGATLLKDPEL 118 VQL G P W+AE A + G+ +D+N GCP+K V G+ L++D + Sbjct: 70 ----VQLAGCDPHWMAEAARVVADHGARIIDINMGCPAKKVVSAAGAGASGSALMRDLDH 125 Query: 119 IYQGAKAMREAVPAHLPVSVKVRLGWDSG-EKKFEIADAVQQAGATELVVHGRTKEQGYR 177 + +A+ AV +PV++K RLGWD G E+A + AG + VHGRT+ Q YR Sbjct: 126 ALRLIEAVVGAV--DVPVTLKTRLGWDEGCSNAAELAKRAEAAGVAMITVHGRTRCQFYR 183 Query: 178 AEHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVV 237 DW I DI Q +NIPVIANG+I SA + MA S VMIGRGA P L V Sbjct: 184 GA-ADWAMISDIAQAVNIPVIANGDIVGVASACRAMAQSNAAGVMIGRGARGRPWLLAEV 242 Query: 238 KYNEPRMPWPEV 249 PEV Sbjct: 243 AAAMGHGTAPEV 254 >UniRef50_D0L1E3 TIM-barrel protein, nifR3 family n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0L1E3_HALNC Length = 333 Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 94/306 (30%), Positives = 145/306 (47%), Gaps = 29/306 (9%) Query: 5 LAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGTL 64 LAPM GV D R+L E L +TE + PELQ+++++ + Sbjct: 28 LAPMAGVSDRPFRQLCREYG-AGLVVTEMMSAK-------------PELQSSAKSRLRQI 73 Query: 65 VR-------VQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPE 117 VQLLG P LAE A AV G+ +DLN GCP+K V G+ L+ +P+ Sbjct: 74 DSNDIEPRAVQLLGNDPFELAEAARFAVSQGAQLIDLNLGCPAKKVCKRAAGSALMAEPD 133 Query: 118 LIYQGAKAMREAVPAHLPVSVKVRLGWDSG-EKKFEIADAVQQAGATELVVHGRTKEQGY 176 + + +A+ AV PVS+K+R G D IA + AG + L +HGRT+ Y Sbjct: 134 TVARLLEALVAAV--DCPVSLKMRTGPDREWRNAVAIAKIAENAGISMLSIHGRTRADRY 191 Query: 177 RAEHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRV 236 E ++ I ++ +++PV ANG+I Q A+Q +A +G +M+GRGA P + Sbjct: 192 EGE-AEYDTIAEVVAAVDLPVFANGDITTPQKARQVIAHTGAAGIMVGRGAFGQPWIFSA 250 Query: 237 VKYNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKE---YDEATELFQH 293 +K P P ++ ++KQ + +YH + RK Y + EL + Sbjct: 251 LKAELTGQPLPSPPDRAERVVAIKKQFEK-IYHHYGDSLGIRIARKHLGWYAASLELGEE 309 Query: 294 VRVLNN 299 R + N Sbjct: 310 DRAVFN 315 >UniRef50_B8GW86 tRNA-dihydrouridine synthase n=7 Tax=Alphaproteobacteria RepID=B8GW86_CAUCN Length = 335 Score = 115 bits (287), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 81/233 (34%), Positives = 124/233 (53%), Gaps = 14/233 (6%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 RV +APM GV D RE + + TE V + F + P++ + Sbjct: 15 RVWIAPMTGVSDLPFRETASALG-APYVATEMVASAE-------FAKGRPDVVRRAAVGE 66 Query: 62 G-TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVN-GSGGGATLLKDPELI 119 G L +QL+G+ ++A+ A A E G+ +DLN GCP+K V G+ G+ L+++P+L Sbjct: 67 GLPLTVIQLVGRDVDFMAQGARMAQEAGAEIIDLNFGCPAKEVAAGAACGSALMREPDLA 126 Query: 120 YQGAKAMREAVPAHLPVSVKVRLGWD-SGEKKFEIADAVQQAGATELVVHGRTKEQGYRA 178 +PV+VK+RLGWD +IA + AGA + VHGRT+ Q Y+ Sbjct: 127 EA--LVAAAVEAVDVPVTVKMRLGWDIDCLNAPDIARRAEAAGAKAVTVHGRTRNQFYKG 184 Query: 179 EHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIP 231 DW A+ ++Q +++PV+ NG+I D ++A+Q + SG D VMIGRG P Sbjct: 185 -VADWTAVAAVKQAVSVPVLVNGDIVDGETARQALEQSGADGVMIGRGVYGRP 236 >UniRef50_A9GW95 Dihydrouridine synthase TIM-barrel protein nifR3 n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GW95_SORC5 Length = 328 Score = 114 bits (285), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 94/289 (32%), Positives = 144/289 (49%), Gaps = 21/289 (7%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 V+LAPME V D++ R + E+ +LC+TEFV V L K R T Sbjct: 17 VVLAPMEDVTDAVFRRIGRELG-AELCVTEFVNVEGLLRGCKTARRKLALADGDQPTA-- 73 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 +Q+ G P+ LAE A A E G +D+NCGC + G G GA L+DPE + Sbjct: 74 ----IQIYGANPERLAEAARVAEEAGPAFLDINCGCWVPKIAGRGAGAGWLRDPEAMVAM 129 Query: 123 AKAMREAVPAHLPVSVKVRLGW--DSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 A+ + +V LPV+VK R+GW +S ++A ++ AG L +H RT + G+ Sbjct: 130 ARLVTRSVA--LPVTVKTRIGWGPESHMPIVDLARRLEDAGVAALTIHCRTAQMGHSGA- 186 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNL---SRVV 237 DW R+ ++IPV+ NG+I A + + +GC VM+GR A++ P + +R + Sbjct: 187 ADWGWAARAREVVSIPVVVNGDIKTADDAARALRETGCAGVMVGRAAIDHPWIFREARAL 246 Query: 238 KYNEPRMPWP---EVVALLQKY--TRLEKQGDTGLYHVARIKQWLSYLR 281 + +P P E +AL + + E +G+ V R + YLR Sbjct: 247 LDDGVHLPPPTAEERLALCRAHLIANTEARGEPHGVRVTR-RHLTGYLR 294 >UniRef50_C3MBL4 tRNA-dihydrouridine synthase n=1 Tax=Rhizobium sp. NGR234 RepID=C3MBL4_RHISN Length = 342 Score = 113 bits (283), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 87/236 (36%), Positives = 121/236 (51%), Gaps = 22/236 (9%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 RV LAPM GV D R L +TE V + V L+N+ P Sbjct: 27 RVALAPMSGVTDLPFRMLAWRFG-AGFVVTEMVASREL---VGNAAESWARLKNSGIDPH 82 Query: 62 GTLVRVQLLGQFPQWLAENAARAVEL-GSWGVDLNCGCPSKTVNGSGGGATLLKDPE--- 117 VQL G+ W+AE AA+ VE G+ VD+N GCP+K V G G+ L++DP+ Sbjct: 83 ----IVQLAGREAHWMAE-AAKIVEANGADIVDINMGCPAKKVTGGYSGSALMRDPDHAL 137 Query: 118 -LIYQGAKAMREAVPAHLPVSVKVRLGWDSGEKKFE-IADAVQQAGATELVVHGRTKEQG 175 LI KA+R +PV++K+RLGWD IA ++AG + +HGRT+ Q Sbjct: 138 SLIEATVKAVR------VPVTLKMRLGWDENSINAPLIARRAEEAGVQAITIHGRTRMQF 191 Query: 176 YRAEHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIP 231 Y + DW AI +R ++IP+IANG++ A + + SG DAVM+GR P Sbjct: 192 YNG-NADWDAIRAVRDVISIPLIANGDVDTIADAMEILRRSGADAVMLGRSCQGRP 246 >UniRef50_C6XJQ7 Dihydrouridine synthase DuS n=2 Tax=Hyphomonadaceae RepID=C6XJQ7_HIRBI Length = 337 Score = 113 bits (283), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 79/261 (30%), Positives = 129/261 (49%), Gaps = 16/261 (6%) Query: 67 VQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAM 126 VQL G+ P+W+ E A + G+ +D+N GCPS+ V G GA L++D +L + A Sbjct: 70 VQLAGRDPKWMYEAARISASAGADIIDINMGCPSRQVTGGQSGAALMRDLDLARELIIAA 129 Query: 127 REAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRAEHIDWQA 185 RE LPVSVK+RLGWD +A ++ + VHGRT+ Q Y + DW Sbjct: 130 REG--GGLPVSVKMRLGWDDDTLNAPALAKICEEEHVKLITVHGRTRCQFYTGKA-DWNK 186 Query: 186 IGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNEPRMP 245 + +++ N+P+I NG+I ++A+Q + +S D VMIGR AL P L + + P Sbjct: 187 VKEVKLASNLPLIVNGDIDSSKTAKQAILLSQADGVMIGRAALGRPWLLGKIASDLANRP 246 Query: 246 WPEVVALLQKYTRLEKQGDTGLY------------HVARIKQWLSYLRKEYDEATELFQH 293 + E + + E+ D+ L H+A + +R ++ EL Sbjct: 247 YIEPTWSEKLSSLCEQVSDSVLLYGDRLGVRVFRKHLAAFIDYSKEIRLNTEDRNELRGR 306 Query: 294 VRVLNNSPDIARAIQAIDIEK 314 +++ D+ AI +++ K Sbjct: 307 FCRISSENDVISAITSLEAPK 327 >UniRef50_A0M6M9 TRNA-dihydrouridine synthase n=16 Tax=Bacteroidetes RepID=A0M6M9_GRAFK Length = 330 Score = 113 bits (283), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 77/247 (31%), Positives = 120/247 (48%), Gaps = 27/247 (10%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFV-------RVVDQLLPVKVFHRICPELQN 55 +LLAPME V D R L E D+ TEF+ + + ++ + P Sbjct: 14 LLLAPMEDVSDPPFRALCKE-QGADVVYTEFISSEGLIREAAKSTMKLDIYEKERP---- 68 Query: 56 ASRTPSGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKD 115 V +Q+ G + + ++ + G +D+N GCP K V G GA +LKD Sbjct: 69 ---------VGIQIFGANLESMLQSVEIVEKSGPDIIDINFGCPVKKVVSKGAGAGILKD 119 Query: 116 PELIYQGAKAMREAVPAHLPVSVKVRLGWDSGEKKF-EIADAVQQAGATELVVHGRTKEQ 174 +L+ +AM + LP++VK RLGWD K E+A+ +Q G + +HGRT+ Q Sbjct: 120 IDLMVSLTEAMVKNT--SLPITVKTRLGWDHDSIKIVEVAERLQDVGCKAISIHGRTRAQ 177 Query: 175 GYRAEHIDWQAIGDIRQ--RLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPN 232 Y+ E DW I +++ R++IPV NG++ + A + G D MIGR ++ P Sbjct: 178 MYKGE-ADWAPIAEVKNNPRMHIPVFGNGDVDSPEKAMEMRDNFGLDGAMIGRASIGYPW 236 Query: 233 LSRVVKY 239 R VK+ Sbjct: 237 FFREVKH 243 >UniRef50_C7LQM9 Dihydrouridine synthase DuS n=2 Tax=Desulfovibrionales RepID=C7LQM9_DESBD Length = 324 Score = 113 bits (282), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 64/202 (31%), Positives = 115/202 (56%), Gaps = 8/202 (3%) Query: 67 VQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAM 126 VQL G +L ++ R + G DLNCGCP + V +G GA LLK+PE + + AK+M Sbjct: 70 VQLFGSEEPFLVQSIERLRKAGFRYFDLNCGCPVRKVIKTGSGAALLKEPENLLKIAKSM 129 Query: 127 REAVPAHLPVSVKVRLGWDSGEKKF-EIADAVQQAGATELVVHGRTKEQGYRAEHIDWQA 185 +A + K+RLGW G+ + ++A +++ GA + +H R QG+ H DW Sbjct: 130 IDAAEPGC-MGFKIRLGWYVGQPVYLQVATKLEELGAGWVTMHPRFGAQGFTG-HADWSH 187 Query: 186 IGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNL-SRVVKYNE--- 241 + +++R+ +PVIA+G+++ + A +C+ + D++M RGALN P++ +R ++ Sbjct: 188 LKTLKERVTLPVIASGDLFHAEDAIKCIEQTSVDSIMFARGALNDPSIFTRYLQLRRHEE 247 Query: 242 -PRMPWPEVVALLQKYTRLEKQ 262 P W ++ ++++ + L Q Sbjct: 248 PPAKSWQQMEDMVRRLSELYPQ 269 >UniRef50_B1LWM8 TIM-barrel protein, nifR3 family n=1 Tax=Methylobacterium radiotolerans JCM 2831 RepID=B1LWM8_METRJ Length = 341 Score = 113 bits (282), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 84/230 (36%), Positives = 120/230 (52%), Gaps = 14/230 (6%) Query: 4 LLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGT 63 LLAP+ GV D +R + D I+E V + F R E + Sbjct: 27 LLAPLSGVTDLHMRRIARRCG-ADAVISEMV-------AAREFTRGSGEATLRAEGSGVD 78 Query: 64 LVRVQLLGQFPQWLAENAARAVELGSWGV-DLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 L VQL G +AE AAR E G V D+N GCP+K V G G+ L++D + + Sbjct: 79 LHVVQLAGCEAGPMAE-AARLAEAGGADVIDVNMGCPAKIVTGIASGSALMRDLDHAERL 137 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGEKKF-EIADAVQQAGATELVVHGRTKEQGYRAEHI 181 ++R AV +PV+VK+RLGWD + ++A ++ G + VHGRT++Q Y+ Sbjct: 138 LASVRGAVS--IPVTVKMRLGWDDASRNAADLAARAERLGLNAVTVHGRTRQQFYKGR-A 194 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIP 231 DW AI + ++IPVIANG++ D+ SA+ C+ SG VMIGR A P Sbjct: 195 DWAAIRAVVAAVSIPVIANGDVTDFASARACLDASGAAGVMIGRAATGRP 244 >UniRef50_D1R8P9 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R8P9_9CHLA Length = 342 Score = 113 bits (282), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 71/167 (42%), Positives = 96/167 (57%), Gaps = 7/167 (4%) Query: 68 QLLGQFPQWLAENAARAVE-LGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAM 126 QL G PQ LA AA+ +E LG VDLNCGCP V G G+ LLK+P LI + M Sbjct: 76 QLCGSKPQ-LAAKAAKIIEDLGFDVVDLNCGCPVDKVTKDGSGSGLLKNPLLIGEILSEM 134 Query: 127 REAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRAEHIDWQA 185 AV +PV+VK+R GWD EI ++AGA + +HGRT++Q YR +W Sbjct: 135 VAAV--KIPVTVKIRAGWDDENLCAEEITQIAEKAGAKAITIHGRTRQQAYRGP-ANWDH 191 Query: 186 IGDIRQ-RLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIP 231 I +Q +I VI NG++ D SA++ +GCDAV++ RG + P Sbjct: 192 IKASKQVAKHIKVIGNGDVMDPTSAKRMFEYTGCDAVLVARGTMGQP 238 >UniRef50_C1F4Z7 Putative tRNA-dihydrouridine synthase n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F4Z7_ACIC5 Length = 398 Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 86/269 (31%), Positives = 128/269 (47%), Gaps = 37/269 (13%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDY---------------------DLCITEFVRVVDQLL 41 +LAPM GV D++ R + + + L +TEF D L Sbjct: 34 TVLAPMAGVTDTVFRRFIRNASLFAEGGAGAANVDREVTNQQSGCGLIMTEFTSA-DGLS 92 Query: 42 PVKVFHRICPELQNASRTPSGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSK 101 ++ R P + QL G P+ LAE A + G VDLN GCP+K Sbjct: 93 KMRESKRKRYLTFYEDEHP----IAAQLFGSNPETLAEGARIVEDTGFDMVDLNLGCPAK 148 Query: 102 TVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVSVKVRLGW-DSGEKKFEIADAVQQA 160 V GG+ LL+D LI + +A+R AV +P +VK RLGW D +A +++ Sbjct: 149 RVVACNGGSGLLRDLPLIAKIFEAVRGAV--KIPFTVKFRLGWNDQHIICVPLARLAEES 206 Query: 161 GATELVVHGRTKEQGYRAEHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDA 220 G + +H RT+EQGY + W+ I +++ + IPVI NG++ + A +A +GCD Sbjct: 207 GLNAVSLHARTREQGYSGQ-ARWEHIAEVKDAVRIPVIGNGDVRTPEDACALVAKTGCDG 265 Query: 221 VMIGRGALNIPNLSRVV-------KYNEP 242 VMIGR A P + R + +Y+EP Sbjct: 266 VMIGRAAPANPWIFRQIAQYTATGRYDEP 294 >UniRef50_Q5FMA1 Transcriptional regulator n=14 Tax=Firmicutes RepID=Q5FMA1_LACAC Length = 342 Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 79/233 (33%), Positives = 123/233 (52%), Gaps = 14/233 (6%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 RV++APM GV +S R + E L + E + D + +R L P Sbjct: 16 RVVVAPMAGVSNSAFRVVCKEFG-AGLVVCEMIS--DH----GIIYRNKKTLSMMDVDPR 68 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWG--VDLNCGCPSKTVNGSGGGATLLKDPELI 119 + +Q+ G + L + AA+ ++ + +D+N GCP V + G+ L D I Sbjct: 69 EHPMSIQIFGGTEETLLQ-AAQYIDQNTDADIIDINMGCPVPKVTKTDAGSKWLLDSNKI 127 Query: 120 YQGAKAMREAVPAHLPVSVKVRLGWDSGEK-KFEIADAVQQAGATELVVHGRTKEQGYRA 178 YQ A+ + V PVSVK+R+GWD E A A Q+AGA+ + +HGRT++Q Y+ Sbjct: 128 YQMVHAVVQNV--QKPVSVKMRIGWDRKHVFAVENALAAQEAGASMIAMHGRTRKQMYQG 185 Query: 179 EHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIP 231 E DW+ + D+ Q L++P +ANG+I + A++ + GC AVM+GR AL P Sbjct: 186 E-ADWEVLHDVAQVLDVPFVANGDIATPELAKKALDDIGCTAVMVGRAALGNP 237 >UniRef50_Q14SX5 Putative dihydrouridine synthase n=6 Tax=Clostridiales RepID=Q14SX5_RUMFL Length = 332 Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 75/232 (32%), Positives = 116/232 (50%), Gaps = 10/232 (4%) Query: 5 LAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGTL 64 LAPM GV D R L+ + ++E V + +C + T Sbjct: 18 LAPMAGVADRAYR-LMCKRYGAAYVVSEMVSAKGICYSDRKTAELC------TVTEEERP 70 Query: 65 VRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAK 124 + VQL G P ++AE ++ +D+N GCP V G+G G+ L+KDP L + Sbjct: 71 MAVQLFGSEPDFMAEAVKIVLDYRPDIIDINMGCPVPKVVGTGAGSALMKDPALAAAITE 130 Query: 125 AMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRAEHIDW 183 A +A PV+VK+R GW S E+A A++ +G + VHGRT++ Y + D Sbjct: 131 AAVKAA-GDTPVTVKIRSGWSSDSINAPEMARALEASGTAAIAVHGRTRDMFYSGQS-DM 188 Query: 184 QAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSR 235 I +++ +++PVI NG+I D +S + +GCD VMIGRG+ P + R Sbjct: 189 NVIKAVKEAVSVPVIGNGDITDAESCAEMYGRTGCDLVMIGRGSYGNPFIFR 240 >UniRef50_C7PIH0 TIM-barrel protein, nifR3 family n=7 Tax=Bacteroidetes RepID=C7PIH0_CHIPD Length = 354 Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 88/256 (34%), Positives = 132/256 (51%), Gaps = 20/256 (7%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 +LLAPME V D R + E DL TEF+ + L+ + R ++ + R P G Sbjct: 14 LLLAPMEDVSDPPFRAVCKE-KGADLMYTEFISS-EGLIRDAIKSRRKLDIFDYER-PVG 70 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGV-DLNCGCPSKTVNGSGGGATLLKD-PELIY 120 +Q+ G + +A AA+ VE + + D+N GCP K V G G+ +LKD P+++ Sbjct: 71 ----IQIFGGDEEPMA-MAAQIVEATNPDLLDINYGCPVKKVVCKGAGSGILKDIPKMVK 125 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKFE-IADAVQQAGATELVVHGRTKEQGYRAE 179 A ++ LPV+VK RLGWD K E +A+ +Q G L +HGRT+ Q Y+ Sbjct: 126 LTAAVVKAT---KLPVTVKTRLGWDDDTKNIEEVAERLQDVGIQALTIHGRTRTQMYKG- 181 Query: 180 HIDWQAIGDIRQ--RLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVV 237 H DW IG ++ R++IP+ NG+I + A G D VMIGR A+ P + + Sbjct: 182 HADWTLIGKVKNNPRIHIPIFGNGDICTPEQAIAAREKYGVDGVMIGRAAIGYPWIFNEI 241 Query: 238 KY---NEPRMPWPEVV 250 K+ +P P V+ Sbjct: 242 KHFMQTGEHLPPPSVL 257 >UniRef50_D0U4P6 tRNA-dihydrouridine synthase n=2 Tax=uncultured SUP05 cluster bacterium RepID=D0U4P6_9GAMM Length = 324 Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 76/232 (32%), Positives = 118/232 (50%), Gaps = 13/232 (5%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPV-KVFHRICPELQNASRTP 60 +V LAPM G D R + L +E V + LL K HR+ + S P Sbjct: 13 QVFLAPMAGTSDKPFRAIC-RAQGAALTTSEMVVIQKHLLGTNKSKHRL-----DFSGEP 66 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 + + +Q+ G LA +A +A++ G+ +D+N GCP+K V G+ L++D L+ Sbjct: 67 AP--ISIQIAGSQADELAYSAQQALKFGADIIDINMGCPAKKVCNKAAGSALMQDEALVK 124 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKF-EIADAVQQAGATELVVHGRTKEQGYRAE 179 A+ AV +PV++K+R GW+ K IA ++AG L VHGRT+E Y Sbjct: 125 SILNAVVSAVD--IPVTLKMRTGWNVSNKNAPTIAKIAEEAGIQMLSVHGRTREDKYTGM 182 Query: 180 HIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIP 231 ++ I ++ ++ IPVIANG+I + AQ + +G D VM+GR P Sbjct: 183 -AEYDTIKAVKSQVGIPVIANGDITSAKKAQSVLQYTGADGVMVGRATQGNP 233 >UniRef50_P37567 Probable tRNA-dihydrouridine synthase 1 n=19 Tax=Bacilli RepID=DUS1_BACSU Length = 333 Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 87/253 (34%), Positives = 133/253 (52%), Gaps = 33/253 (13%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 RV+LAPM GV +S R + E +C V D+ + L N +RT Sbjct: 12 RVVLAPMAGVCNSAFRLTVKEFGAGLVCAE---MVSDKAI-----------LYNNART-M 56 Query: 62 GTL--------VRVQLLGQFPQWLAENAARAVELGSWG--VDLNCGCPSKTVNGSGGGAT 111 G L + +Q+ G + L E AA+ V+ + +D+N GCP + GA Sbjct: 57 GMLYIDEREKPLSLQIFGGKKETLVE-AAKFVDQNTTADIIDINMGCPVPKITKCDAGAK 115 Query: 112 LLKDPELIYQGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEI--ADAVQQAGATELVVHG 169 L DP+ IY+ A+ +AV + PV+VK+R+GWD + F + A AV++AG + +HG Sbjct: 116 WLLDPDKIYEMVSAVVDAV--NKPVTVKMRMGWDE-DHIFAVKNAQAVERAGGKAVALHG 172 Query: 170 RTKEQGYRAEHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALN 229 RT+ Q Y +W I +++Q ++IPVI NG++ Q A++ + +G D VMIGR AL Sbjct: 173 RTRVQMYEGTA-NWDIIKEVKQSVSIPVIGNGDVKTPQDAKRMLDETGVDGVMIGRAALG 231 Query: 230 IP-NLSRVVKYNE 241 P + R V+Y E Sbjct: 232 NPWMIYRTVQYLE 244 >UniRef50_C7RGQ7 TIM-barrel protein, nifR3 family n=4 Tax=Anaerococcus RepID=C7RGQ7_ANAPD Length = 326 Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 68/239 (28%), Positives = 125/239 (52%), Gaps = 13/239 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 ++LAPM G+ DS R++ E N D TE V V + +R E+ + + Sbjct: 10 IMLAPMAGITDSAFRQICEE-NGCDKTFTEMVSVN----ALDFNNRATEEIMYTAYSEKN 64 Query: 63 TLVRVQLLGQFPQWLAENAARAVE--LGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 +Q+ G+ + + + N GCP+ + +G G+ L++D + +Y Sbjct: 65 --CNIQIFGKDCDIIERVIKDKINPREDFEEISFNMGCPAPKIFNNGQGSALMRDVKKVY 122 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKF-EIADAVQQAGATELVVHGRTKEQGYRAE 179 + K ++E+ V+VK+R+G D + E+ A++ +G +++HGRT++Q Y + Sbjct: 123 EIGKCLKESTDK--IVNVKIRMGIDDDSVNYIEVGKALEDSGIDYVILHGRTRKQQYSGK 180 Query: 180 HIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK 238 +WQAI +++ L+IPVIANG+++ + + + +G D VMI RGA+ P + R +K Sbjct: 181 A-NWQAIRKLKETLSIPVIANGDVFSVKDYKDILDETGADGVMIARGAMGNPFIFRQIK 238 >UniRef50_Q090Q9 TRNA-dihydrouridine synthase B n=2 Tax=Cystobacterineae RepID=Q090Q9_STIAU Length = 369 Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 77/258 (29%), Positives = 128/258 (49%), Gaps = 17/258 (6%) Query: 4 LLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVK---VFHRICPELQNASRTP 60 +LAPM GV + R + + LC TE V + + + R PE++ Sbjct: 46 ILAPMAGVSERPFRVIAFKWGA-ALCPTELVSAQGLMRANQRTLKYLRFSPEVERP---- 100 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 +Q+ G P+ +A+ A G+ +D+N GCP K V +G G+ L+ +P Sbjct: 101 ----YSLQIFGGEPEAMAQAALVGKAHGAQIIDINMGCPVKKVTKNGAGSALMCEPLRAA 156 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKF-EIADAVQQAGATELVVHGRTKEQGYRAE 179 + +A+ EA LPV+ K+R GWD+ + + ++A + AG L +H RT++QGY + Sbjct: 157 RIVQAIAEAT--GLPVTCKIRSGWDAHHRNYLQMAGELFSAGCAALAIHPRTRDQGY-SG 213 Query: 180 HIDWQAIGDIRQRL-NIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK 238 DW I D+++ + +I NG++ A++ +GCD VMIGRGAL P + R + Sbjct: 214 FADWSVIADLKRHFPDRTLIGNGDVKTPADARRMRETTGCDFVMIGRGALGNPWIFRELA 273 Query: 239 YNEPRMPWPEVVALLQKY 256 P P +L+ + Sbjct: 274 GGPPPTPEERCAGVLEHF 291 >UniRef50_A4S604 Predicted protein (Fragment) n=2 Tax=Mamiellales RepID=A4S604_OSTLU Length = 287 Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 63/146 (43%), Positives = 88/146 (60%), Gaps = 3/146 (2%) Query: 86 ELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVSVKVRLGWD 145 E G+ VDLNCGCP G GA LLK P + + + + + +P++VK+RLG D Sbjct: 84 EFGADFVDLNCGCPIHETWKRGLGAALLKKPAKLERLVEGIASRI--DVPLTVKIRLGID 141 Query: 146 SGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHIDWQAIGDIRQRLNIPVIANGEIWD 205 S + IA+ ++ AGA+ +VVHGRTKEQ Y + D+ I DI + NIP+I NG++ Sbjct: 142 SSSQARRIAEGLENAGASAVVVHGRTKEQRY-TKAADYDVIRDIVRERNIPIIGNGDVLT 200 Query: 206 WQSAQQCMAISGCDAVMIGRGALNIP 231 W A+ M SG A+M+GRGAL P Sbjct: 201 WYDARDRMEHSGVAAMMVGRGALIKP 226 >UniRef50_C1EEA5 Dihydrouridine synthase n=1 Tax=Micromonas sp. RCC299 RepID=C1EEA5_9CHLO Length = 465 Score = 110 bits (276), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 90/265 (33%), Positives = 125/265 (47%), Gaps = 36/265 (13%) Query: 3 VLLAPMEGVLDS-LVRELLTEVNDYDLCITEFVRVVDQLL----PVKVFHRIC------P 51 + LAPMEG+ D L R L +D EF RV L P K+ I Sbjct: 45 LFLAPMEGLGDRRLRRALAFSTGGFDEACREFTRVPGVLSQGANPEKLLRGIALTGYDAD 104 Query: 52 ELQN------------------ASRTPSGTLVRVQLLGQFPQWLAENAAR--AVELGSWG 91 EL + SR P+ L+ QL+G L E AR A + G+ Sbjct: 105 ELTDWERFAWHHDDVRGDAPPPTSRAPN--LLAAQLMGSNEDLL-ERCARFLAHQGGAPR 161 Query: 92 VDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAH-LPVSVKVRLGWDSGEKK 150 VDLNCGCP+ V G G G++LL+DP + +A+ V V+VK+R G+D Sbjct: 162 VDLNCGCPANVVTGKGAGSSLLRDPRDVEAMTRAVARGVAGTGCAVTVKLRSGFDDRGLL 221 Query: 151 FEIADAVQQAGATELVVHGRTKEQGYRAEHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQ 210 E A Q GA+ + +H RT+ QGY H W+ IG L++PV+ NG++ A Sbjct: 222 RENLLAAQAGGASFVTLHPRTRAQGYSG-HAAWEDIGFAVDLLSVPVVGNGDVTSAALAS 280 Query: 211 QCMAISGCDAVMIGRGALNIPNLSR 235 + + +GC VMIGRGA+ P + R Sbjct: 281 KMLRDTGCAGVMIGRGAVQDPLVFR 305 >UniRef50_C1SJZ7 tRNA-dihydrouridine synthase n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SJZ7_9BACT Length = 340 Score = 110 bits (276), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 85/287 (29%), Positives = 145/287 (50%), Gaps = 17/287 (5%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 +++ AP+ GV R+LL + D L TE V V V + L S T S Sbjct: 19 KLIAAPLAGVTTPPFRKLLRKYFD-GLIYTEMVSVEG------VRRKADRTLSYLSITES 71 Query: 62 GTLVRVQLLGQFPQWLAENAARAVE--LGSWGVDLNCGCPSKTVNGSGGGATLLKDPELI 119 + VQL G P+ E A V+ + + VD+N GCP K V SG G ++KDP Sbjct: 72 DQPIGVQLFGSKPEAYTE-AIEVVQDYIKAEFVDINMGCPVKKVLKSGSGCAMMKDPVNS 130 Query: 120 YQGAKAMREAVPAHLPVSVKVRLGWDSGEKKF-EIADAVQQAGATELVVHGRTKEQGYRA 178 + A ++A+ +P++VK+RLGWD + E+ + GA + VHGRTK + + Sbjct: 131 GKIVAAAKKAL-GDVPLTVKIRLGWDKKNLNYNEMIKIAYEEGAEAVTVHGRTKTEMFSG 189 Query: 179 EHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNL-SRVV 237 +++ I D + +P+I NG++ D + ++ +A +G D VMIGRG + P L ++ Sbjct: 190 -VVNYDLIADAKANAKLPIIGNGDVVDVATYEKMLA-TGVDGVMIGRGMMKQPWLFESIL 247 Query: 238 KYNEPR--MPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRK 282 +P M + ++ L+++ R EK ++ + +K+++ + K Sbjct: 248 NGRDPSGYMTYDKLYELIKELVRNEKIYKGEMFFLETVKKYIVWFLK 294 >UniRef50_C4Z9L8 tRNA-dihydrouridine synthase n=26 Tax=Firmicutes RepID=C4Z9L8_EUBR3 Length = 323 Score = 110 bits (276), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 85/286 (29%), Positives = 144/286 (50%), Gaps = 20/286 (6%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 ++L PM GV D R L E LC+ E V L K + S Sbjct: 20 LILGPMAGVTDLPFRLLCKEQGAGLLCM-EMVSAKAILYKNKNTESLL------SIDERE 72 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 V +Q+ G PQ +A+ A + E +D+N GCP + +G G+ L+K+P L Q Sbjct: 73 KPVSLQMFGSDPQIMAQIAKQIEERPFDILDINMGCPVPKIVNNGEGSALMKNPLLAGQI 132 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 +++ +A+ PV+VK+R G+D E+A +++GA+ + VHGRT+EQ Y + Sbjct: 133 IESIVKAIDK--PVTVKIRKGFDDEHVNAVELAHVAEESGASAVAVHGRTREQYYSGK-A 189 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIP-NLSRVVKYN 240 DW I +++ ++IPVI NG++ + + +GCD MI RGA P S+++ Y Sbjct: 190 DWDIIRQVKEAVSIPVIGNGDLLSAEDVIKMQEQTGCDGFMIARGAQGNPWIFSQILHYF 249 Query: 241 EP-----RMPWPEVVALLQKYTRL--EKQGD-TGLYHVARIKQWLS 278 E + + EV ++ ++ R+ E +G+ TG++ + + W + Sbjct: 250 ETGEHQEKPSFEEVRRMILRHARMMIEFKGEYTGIHEMRKHTAWYT 295 >UniRef50_C1A3V7 Putative tRNA-dihydrouridine synthase n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A3V7_GEMAT Length = 349 Score = 110 bits (275), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 84/261 (32%), Positives = 132/261 (50%), Gaps = 22/261 (8%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEF-----VRVVDQLLPVKVFHRICPELQNAS 57 + LAPM GV +S R L + D+ +TEF +R ++ K+ R PE + Sbjct: 16 LYLAPMAGVSESPFRRL-CHAHGADVVVTEFLSAEGIRRENEATISKL--RFAPEER--- 69 Query: 58 RTPSGTLVRVQLLGQFPQWLAENAARAVELGSWG-VDLNCGCPSKTVNGSGGGATLLKDP 116 P G VQ+ G P +A+ AA ++ S VD+N GCP K V GG+ LKD Sbjct: 70 --PIG----VQIFGSEPSAMADAAALVTDMFSPDFVDINFGCPVKKVVRRNGGSGCLKDL 123 Query: 117 ELIYQGAKAMREAVPAHLPVSVKVRLGWDSGEKK-FEIADAVQQAGATELVVHGRTKEQG 175 +L+ + +A+ +A P LPV+VK R GW+ + IA +Q AGA +H RT+ Q Sbjct: 124 DLVEEIIRAVSKATP--LPVTVKTRSGWNEEMRDPVGIALRMQDAGAKVFALHARTRTQM 181 Query: 176 YRAEHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSR 235 Y +W I + + L+IPV+ NG+I A++ + + D +MIGRG+ P + + Sbjct: 182 YSGS-ANWDEIARVAEALDIPVLGNGDIKTALDAKRMLDHTKADGIMIGRGSYGQPWVFK 240 Query: 236 VVKYNEPRMPWPEVVALLQKY 256 + P PE + +++ Sbjct: 241 QTRALIDGTPVPETPGVQERF 261 >UniRef50_Q1J2A4 Dihydrouridine synthase, DuS n=3 Tax=Deinococcus RepID=Q1J2A4_DEIGD Length = 333 Score = 110 bits (274), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 92/246 (37%), Positives = 126/246 (51%), Gaps = 19/246 (7%) Query: 4 LLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGT 63 +LAPM G D+ +R+L E ++E + +L E R G Sbjct: 18 VLAPMAGYSDAPMRQLAAEQGAL-WTVSEMISARGLVLGGDS------EKLTLGRPYPGE 70 Query: 64 LVRV-QLLGQFPQWLAENAARAVE-LGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + RV QL G P LA+ ARA +DLN GCP V G GG A LL+ PE+ Y Sbjct: 71 VGRVVQLFGAEPDVLAQAVARAESWFAPAALDLNMGCPVPKVKGRGG-ACLLQTPEVAYT 129 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 +AMR A L VS K+RLGWD+ ++ EIA + AGA + VHGRT Q Y E Sbjct: 130 LVRAMRSAT--TLDVSAKIRLGWDT-DRSVEIAQGLAAAGAALITVHGRTSVQRYSGE-A 185 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAI--SGCDAVMIGRGALNIPNLSRVVKY 239 DW AI + + +PV+ +G++ +SA+Q A +G AVMIGRGA+ P L R + Sbjct: 186 DWDAIARVAASVKVPVVGSGDV---KSAEQARARLNTGVAAVMIGRGAVGNPWLFRALAS 242 Query: 240 NEPRMP 245 + +P Sbjct: 243 GDDVVP 248 >UniRef50_B8FGI4 TIM-barrel protein, nifR3 family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FGI4_DESAA Length = 332 Score = 110 bits (274), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 62/166 (37%), Positives = 91/166 (54%), Gaps = 4/166 (2%) Query: 67 VQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAM 126 +Q+ G P LA++A E G+ VD+N GC K V G G+ L+ D + K + Sbjct: 70 IQIFGSDPGVLADSARIVAEHGADIVDINFGCSVKKVLKGGAGSALMADLPRAEKILKEV 129 Query: 127 REAVPAHLPVSVKVRLGWD-SGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHIDWQA 185 R+A+ LP ++K+R GWD SG++ + Q AG + +H RT +QG+ H DW Sbjct: 130 RKAI--SLPFTIKMRSGWDASGDEAMALGRIAQDAGVDAVALHPRTAKQGFSG-HSDWSQ 186 Query: 186 IGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIP 231 I ++Q L IPVI NG++ + + M +GCD VMIGR L P Sbjct: 187 IKRLKQELTIPVIGNGDVTKPEHVLEMMEQTGCDGVMIGRAVLYAP 232 >UniRef50_A5FL15 tRNA-dihydrouridine synthase B-like protein n=14 Tax=Bacteroidetes RepID=A5FL15_FLAJ1 Length = 332 Score = 110 bits (274), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 80/254 (31%), Positives = 128/254 (50%), Gaps = 16/254 (6%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 +LLAPME V D R L + + D+ +EF+ + L+ + R+ ++ + R P G Sbjct: 16 LLLAPMEDVSDPPFRRL-CKTHGADMMYSEFISS-EGLIRDAIKSRMKLDIFDYER-PVG 72 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 +Q+ G + + ++ + VD+N GCP K V G GA +LKD +L+ + Sbjct: 73 ----IQIFGGDEEAMEMSSKIVSTVKPDLVDINFGCPVKKVVCRGAGAGVLKDVDLMVRL 128 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGEKKF-EIADAVQQAGATELVVHGRTKEQGYRAEHI 181 KA+ + LPV+VK RLGWD E+A+ +Q G L +H RT+ Q Y+ H Sbjct: 129 TKAVIKG--TDLPVTVKTRLGWDESSINIDEVAERLQDIGVQALTIHARTRAQMYKG-HS 185 Query: 182 DWQAIGDIRQ--RLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY 239 DW I ++ R+ +P+ NG+I + A Q G D +MIGR A+ P + +K+ Sbjct: 186 DWSHIARVKNNPRITMPIFGNGDIDSPEKALQYKNEYGIDGIMIGRAAIGYPWIFNEIKH 245 Query: 240 ---NEPRMPWPEVV 250 +P P V+ Sbjct: 246 YFKTGEHLPAPTVI 259 >UniRef50_A0Q6L0 TRNA-dihydrouridine synthase n=19 Tax=Francisella RepID=A0Q6L0_FRATN Length = 328 Score = 110 bits (274), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 94/317 (29%), Positives = 156/317 (49%), Gaps = 23/317 (7%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 V+LAPM G DS R + E + L TE V ++ + + + + S P G Sbjct: 14 VVLAPMAGFCDSAFRTICKE-HGAGLIYTEMVS--NKAVVERNWETMEMLYMENSEKPLG 70 Query: 63 TLVRVQLLGQF---PQWLAENAARAVELGSWGVDLNCGCP-SKTVNGSGGGATLLKDPEL 118 + + F +++AEN +D+N GCP K GA LLKD Sbjct: 71 IQIFGTDIDSFVGATKYIAENTECDF------LDINMGCPMPKVAKKLQAGAALLKDVNR 124 Query: 119 IYQGAKAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYR 177 I++ A+ +AV H PV+VK+R+GWD E+A A + AG + + +HGRT+EQ Y Sbjct: 125 IHEILTAVVKAV--HKPVTVKMRIGWDDKNINAIEVAKACEDAGVSAIAIHGRTREQMYT 182 Query: 178 AEHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSR-V 236 + +W I D+R+ ++I VI NG+++ SA+ + +G DAVM+GR + P + R + Sbjct: 183 GK-ANWDIIRDVRKAVDIVVIGNGDVFCPHSAKAMIEHTGVDAVMVGRASRGNPWIFRQI 241 Query: 237 VKY-NEPRM---PWP-EVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELF 291 KY N + P P E V +L+++ R + T V I+ S+ ++ + E Sbjct: 242 AKYLNTGELIPPPTPVERVDVLEEHLRRLIKLKTAKVAVKEIRTHASFYLQDLPNSKEFR 301 Query: 292 QHVRVLNNSPDIARAIQ 308 + L + +I + ++ Sbjct: 302 MKLNQLEHEQEIFKILE 318 >UniRef50_Q0BSS6 tRNA-dihydrouridine synthase n=15 Tax=Alphaproteobacteria RepID=Q0BSS6_GRABC Length = 370 Score = 109 bits (272), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 79/238 (33%), Positives = 119/238 (50%), Gaps = 11/238 (4%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 V+LAPM GV D R L E+ + ++E + + K R+ S Sbjct: 43 VILAPMSGVTDLPFRMLAREMGT-GMVVSEMIASWAMVRENKTTLRMAEPAGPPSPGSPN 101 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVN-GSGGGATLLKDPELIYQ 121 L QL G P+ +AE A A++ G+ +D+N GCP K V G G+ L++D Sbjct: 102 AL---QLAGCDPEAMAEAARIAIDKGAELIDINFGCPVKKVAVGQSAGSALMRDE---VT 155 Query: 122 GAKAMREAVPA-HLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRAE 179 AK + V A +PV++K+R+GWD +A + +G + VHGRT++Q Y + Sbjct: 156 AAKILEATVKAVSVPVTLKMRMGWDHQSLNAPALAKIAEASGIRMITVHGRTRQQFYEGK 215 Query: 180 HIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVV 237 DW + ++Q ++PVI NG+I + A + AISG D VM+GRG P R V Sbjct: 216 -ADWAFVARVKQATSLPVIVNGDIQTVEQAAEARAISGADGVMVGRGCYGRPWFPRQV 272 >UniRef50_Q256J2 Dehydrogenases n=13 Tax=Chlamydiaceae RepID=Q256J2_CHLFF Length = 339 Score = 109 bits (272), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 73/241 (30%), Positives = 124/241 (51%), Gaps = 16/241 (6%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVD-QLLPVKVFHRICPELQNASRTPS 61 ++ AP+ G D R + + L E V++ P + + E + R Sbjct: 16 IVYAPLAGFSDYPYRRMSSLYGLPALMFCEMVKIEGLHYSPSRTLKLL--EYSESMRPIG 73 Query: 62 GTLVRVQLLGQFPQWLAENAARAVE-LGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 G QL G P+ +A AA+ +E LG +DLNCGCP+ + G G+ LLK PELI Sbjct: 74 G-----QLCGSKPE-MAGEAAKVLEGLGFDLIDLNCGCPTDRITKDGSGSGLLKTPELI- 126 Query: 121 QGAKAMREAVPA-HLPVSVKVRLGWDSGEKKF-EIADAVQQAGATELVVHGRTKEQGYRA 178 K + + + + +PV+VK+R GWD E +++AGA+ + VHGRT+ QGY Sbjct: 127 --GKVLEKIIGSVSIPVTVKIRSGWDGNNINVEETVRIIKEAGASAVFVHGRTRAQGYVG 184 Query: 179 -EHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVV 237 ++++ A + PV NG+++ ++A+ + +GCD V++ RG + P ++R + Sbjct: 185 PSNLEYIARAKAAAGKDFPVFGNGDVFSPEAAKLMLDSTGCDGVLVARGTMGAPWIARQI 244 Query: 238 K 238 + Sbjct: 245 E 245 >UniRef50_A1AT39 Dihydrouridine synthase, DuS n=7 Tax=Desulfuromonadales RepID=A1AT39_PELPD Length = 342 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 75/256 (29%), Positives = 128/256 (50%), Gaps = 9/256 (3%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRI-CPELQNASRTPS 61 ++LAPM+GV +S +R L + D+ TEF+RV P R+ +L A Sbjct: 36 LMLAPMQGVTNSALRSLFIDWVRPDVVFTEFMRVN----PAAAQRRLSAADLAEAGSAGD 91 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + VQL+G + L + A + G+ ++LN GCP + G +L+ P+ + Sbjct: 92 DVPLVVQLIGHGREALVSGSQAAQDAGAAHINLNMGCPYGRMTSGQTGGGMLRSPQELSS 151 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 A+R+ + S+K+R G+D+ + F++ + +G LV+H RT Q Y A Sbjct: 152 IIPALRKTIRGTF--SIKLRSGYDNPRQIFDLLPLFEASGVDFLVLHPRTVLQKY-AGFA 208 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNE 241 D + QR +P+IANG+I + + + +G +M+GRGA++ P L + ++ Sbjct: 209 DHGITAEAVQRSTLPIIANGDIRSVATGRHVLRETGAAGLMLGRGAISDPLLFQRLRNCA 268 Query: 242 PRMPWP-EVVALLQKY 256 P P P E A+L +Y Sbjct: 269 PPDPQPQERAAMLSRY 284 >UniRef50_Q9ZLB6 Probable tRNA-dihydrouridine synthase n=23 Tax=Epsilonproteobacteria RepID=DUS_HELPJ Length = 328 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 77/244 (31%), Positives = 121/244 (49%), Gaps = 10/244 (4%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 + LAP+ G D R ++ + D+ +E +V V F + L+ ++P Sbjct: 9 LFLAPLAGYTDLPFRSVVKKFG-VDVTTSE---MVSSHSLVYAFDKTSKMLE---KSPLE 61 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGS-WGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 Q+ G + E + L G+D NCGCP+ V G G+ LLKD + + Sbjct: 62 DHFMAQISGSKESVVKEAVEKINALDHVSGIDFNCGCPAPKVANHGNGSGLLKDLNHLVE 121 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 K +RE + SVKVRLG++ K EIA A+ A +VVHGRT+ Y+ + I Sbjct: 122 ILKVIRENTNKKI-TSVKVRLGFEKKIPK-EIAHALNDAPVDYVVVHGRTRSDRYQKDKI 179 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNE 241 D+++I +++ L PVIANGEI + A + + I+ D +MIGR L P + ++ N Sbjct: 180 DYESIALMKKILKKPVIANGEIDSVKKAFEVLQITQADGLMIGRATLRAPWIFWQIRNNT 239 Query: 242 PRMP 245 +P Sbjct: 240 TELP 243 >UniRef50_B7GFK6 tRNA-dihydrouridine synthase n=211 Tax=Bacteria RepID=B7GFK6_ANOFW Length = 351 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 91/295 (30%), Positives = 141/295 (47%), Gaps = 27/295 (9%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 V+LAPM GV +S R + E +C V D+ + + + P Sbjct: 31 VVLAPMAGVCNSAFRLTVKEFGAGLVCAE---MVSDKAILFNNPKTMGMLYIDEREKP-- 85 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWG--VDLNCGCPSKTVNGSGGGATLLKDPELIY 120 + +Q+ G + L + AA+ V+ + +D+N GCP + GA L DP IY Sbjct: 86 --LSLQIFGGEKETLVQ-AAKYVDQHTNADIIDINMGCPVPKITKCDAGAKWLLDPNKIY 142 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRAE 179 A+ +AV PV+VK+R+GWD E A AV++AG + VHGRT+ Q Y + Sbjct: 143 DMVAAVVDAVEK--PVTVKMRIGWDENHIYAVENAQAVERAGGQAVAVHGRTRVQMYEGK 200 Query: 180 HIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIP-NLSRVVK 238 DW I +++ + IPVI NG++ Q A++ + +G D VMIGR AL P + R V+ Sbjct: 201 A-DWNVIKQVKEAVRIPVIGNGDVQTPQDAKRMLEQTGVDGVMIGRAALGNPWMIYRTVR 259 Query: 239 YNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQH 293 Y E PE + ++ + + H+ R L L+ EY E+ +H Sbjct: 260 YLETGELIPE--------PSVREKIEVCILHLDR----LIALKNEYIAVKEMRKH 302 >UniRef50_Q9KV66 tRNA-dihydrouridine synthase B n=56 Tax=Proteobacteria RepID=DUSB_VIBCH Length = 322 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 91/297 (30%), Positives = 153/297 (51%), Gaps = 21/297 (7%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQL-LPVKVFHRICPELQNASRTPS 61 +++APM GV D REL + ++E + L K +R+ E ++ R+ Sbjct: 12 LIVAPMAGVTDRPFRELCLRYGA-GMAVSEMMSCNPALWKTAKSQNRMVHEGESGIRS-- 68 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 VQ+ G PQ +AE A +VE G+ +D+N GCP+K VN G+ LL+ P++I Sbjct: 69 -----VQIAGSDPQLMAEAAQFSVENGAQIIDINMGCPAKKVNKKLAGSALLRYPDVIED 123 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKK-FEIADAVQQAGATELVVHGRTKEQGYRAEH 180 KA+ AV V++K R GWD+ K IA + G L +HGRT+ Y+ E Sbjct: 124 ILKAVVNAVNVP--VTLKTRTGWDTDNKNCLSIAQLAEDCGIQALALHGRTRACMYKGE- 180 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY- 239 ++ +I ++ ++IPVIANG+I + A+ + +G DA+MIGR A P + + +++ Sbjct: 181 AEYDSIKAVKAAVSIPVIANGDIDSPEKARYVLEYTGADALMIGRPAQGRPWIFQEIQHF 240 Query: 240 -----NEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARI-KQWLSYLRKEYDEATEL 290 P +P EV ++ + Q G Y RI ++ +S+ +E+++A+ Sbjct: 241 LEHGTTMPELPISEVKDIMLGHVTALHQF-YGEYLGPRIARKHVSWYLQEHEQASAF 296 >UniRef50_A6BZR9 Predicted TIM-barrel enzyme, possibly dehydrogenase, nifR3 family protein n=1 Tax=Planctomyces maris DSM 8797 RepID=A6BZR9_9PLAN Length = 355 Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 80/239 (33%), Positives = 117/239 (48%), Gaps = 11/239 (4%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 R LAP+ G R + E+ LC T+ V + LL R L S P+ Sbjct: 24 RYFLAPLAGYTQHAFRVAIRELGGVGLCTTDLV-LASHLLSGS---RKSKALLTTS--PA 77 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + +Q+ G L A + G VDLN GCP +NG+GGGA ++ P+ Q Sbjct: 78 DRPLTIQIFGGITAELVAAARWLEQHGYAAVDLNMGCPMAKINGNGGGARIMCAPDAACQ 137 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKKFE-IADAVQQAGATELVVHGRTKEQGYRAEH 180 + +AV +PV+VK+RLGWD +A +QAG + VHGRT+ QG+ Sbjct: 138 LVAEVVDAV--SIPVTVKMRLGWDRDSITAPLLAREFEQAGVAAITVHGRTRNQGF-GGT 194 Query: 181 IDWQAIGDIRQRL-NIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK 238 +D Q I + + IPVI NG++ + A + +GC+AV IGRGA+ P + R + Sbjct: 195 VDLQGIRQTVEAVQQIPVIGNGDVCTVEDAFRMREQTGCEAVSIGRGAMLDPWIFRKIS 253 >UniRef50_Q88DK5 tRNA-dihydrouridine synthase B n=460 Tax=Proteobacteria RepID=DUSB_PSEPK Length = 337 Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 81/256 (31%), Positives = 128/256 (50%), Gaps = 24/256 (9%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQL-----LPVKVFHRICPELQNAS 57 ++LAPM GV D R L + + ++E V L ++ H PE ++ Sbjct: 15 LILAPMAGVTDQPFRTLCQRLG-AGMVVSEMVSSDMSLWNSRKSSLRRIHEGDPEPRS-- 71 Query: 58 RTPSGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPE 117 VQ+ G Q +A A VE G+ +D+N GCP+K V G+ LL+D Sbjct: 72 ---------VQIAGGDAQMMAAAAKANVEAGAQIIDINMGCPAKKVCNKAAGSALLRDEA 122 Query: 118 LIYQGAKAMREAVPAHLPVSVKVRLGWDSGEKK-FEIADAVQQAGATELVVHGRTKEQGY 176 L+ + A+ AV +PV++K+R GWD K +A +QAG L VHGRT+ Y Sbjct: 123 LVSEILHAVVSAV--DVPVTLKIRTGWDRANKNGLNVAKIAEQAGIQALAVHGRTRADLY 180 Query: 177 RAEHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRV 236 E ++ IG I+Q ++IPV ANG+I + A+ + +G D ++IGR A P + R Sbjct: 181 TGE-AEYDTIGAIKQAVSIPVFANGDITSPEKARAVLETTGVDGLLIGRAAQGRPWIFRE 239 Query: 237 VKY---NEPRMPWPEV 249 +++ +P P++ Sbjct: 240 IEHYLRTGEHLPAPQL 255 >UniRef50_Q1Q3Q8 Strongly similar to tRNA-dihydrouridine synthase n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q3Q8_9BACT Length = 341 Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 73/234 (31%), Positives = 118/234 (50%), Gaps = 11/234 (4%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 ++LAPM G D R L+ + TE V V + K ++ + + R Sbjct: 35 LILAPMAGFSDMPYR-LICRRFGMSMSYTEVVSVSGIVWNNKKTFKLL-DFKEEERP--- 89 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 V Q++G + E + +LG +D+N GC + G G GA +LK P I + Sbjct: 90 --VTFQVVGNDECQITEACKKIEQLGPDIIDINMGCSVSDIAGKGAGAGMLKHPSKISKM 147 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGEKKF-EIADAVQQAGATELVVHGRTKEQGYRAEHI 181 + ++ +PV+ K+RLGWD + + E+A +++ GA+ + VHGRT+ Q Y + Sbjct: 148 FNNLTGSLS--VPVTGKIRLGWDHKTRNYIEVARILEENGASLIAVHGRTRSQ-YFSGAA 204 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSR 235 DW AI +++Q + IPVIANG++ + + CD VMIGR A+ P + R Sbjct: 205 DWDAIAEVKQSVKIPVIANGDVRSVADIAEIKKRTACDGVMIGRAAIGHPWIFR 258 >UniRef50_C7H613 tRNA-dihydrouridine synthase n=3 Tax=Ruminococcaceae RepID=C7H613_9FIRM Length = 340 Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 77/249 (30%), Positives = 123/249 (49%), Gaps = 13/249 (5%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 R + PM G D+ R L+ + + ++E +V V H+ L+ P+ Sbjct: 50 RAVFGPMAGFTDAPARRLMAQ-HGAGFTVSE---MVSSRALVYGDHKTVSLLKA---EPN 102 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 G VQ+ G+ P+ + + AA + +D+N GCP+ + G G+ L+ DP+ + Sbjct: 103 GAPYGVQIFGEVPEIMGQAAAAVEQYAFDFLDINMGCPAPKIVSGGAGSKLMLDPD---R 159 Query: 122 GAKAMREAVP-AHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRAE 179 + + E V PV+VK+R GWD+ E A A +QAGA + VH RT+EQ Y Sbjct: 160 CGRIVEEVVKNTSRPVTVKMRKGWDAEHVTAVECAKACEQAGAVLIAVHARTREQMY-TP 218 Query: 180 HIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY 239 ID I ++ +++PV+ NG+I + A + + +GCD VMI R AL P L V Sbjct: 219 GIDPSIIAAVKDAVHVPVLGNGDIRTAEDAVRMVEETGCDGVMIARAALGDPWLFERVNA 278 Query: 240 NEPRMPWPE 248 +P P+ Sbjct: 279 ALEGLPRPQ 287 >UniRef50_C0QXB6 Dihydrouridine synthase-like (DUS-like) FMN-binding domain protein n=2 Tax=Brachyspira RepID=C0QXB6_BRAHW Length = 325 Score = 108 bits (269), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 81/237 (34%), Positives = 119/237 (50%), Gaps = 21/237 (8%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 R LAPM G D + R L + L +TE V VK +R ++ P Sbjct: 15 RFFLAPMAGYTDYVFRRLSRKFG-AGLLVTELVSAAALARQVKKTYRYMEHKED--EYP- 70 Query: 62 GTLVRVQLLGQFPQWLAENAARAVEL----GSWGVDLNCGCPSKTVNGSGGGATLLKDPE 117 + +QL G ++ RA+E+ G +D+N GCP+K V + GGA LL+D + Sbjct: 71 ---ISLQLFGANE----DDYKRAIEITDLSGFSFIDINMGCPTKKVVKNNGGAGLLEDTD 123 Query: 118 LIYQGAKAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGY 176 + A++ P LPVSVK+RLG GE + E A A+++ GA L +HGR Y Sbjct: 124 KMISVLNAVKSVSP--LPVSVKIRLGLKRGEGGEIERALAMKENGACFLTLHGRYASDMY 181 Query: 177 RAEHIDWQAIGDIRQRL--NIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIP 231 R DW+AI I++ L + +I NG+I + A + IS D +M+GRGA+ P Sbjct: 182 RGTA-DWEAIAKIKEALGEDYILIGNGDIKSKEDAVKAFDISKVDGIMVGRGAIGNP 237 >UniRef50_A6NW05 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NW05_9BACE Length = 307 Score = 107 bits (268), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 64/166 (38%), Positives = 96/166 (57%), Gaps = 4/166 (2%) Query: 68 QLLGQFPQWLAENAARAVEL-GSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAM 126 Q+ G + + E AA A E+ G+ +D+N GCP V SG G+ L++D + + A+A+ Sbjct: 54 QIFGSDEKCMEEAAAIAGEVSGADIIDINMGCPVPKVANSGDGSGLMRDVDKAVRVAEAV 113 Query: 127 REAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRAEHIDWQA 185 PV+VK RLGWD G E A A++ AG + + VHGRT+ Q Y A +W Sbjct: 114 VRGA-GERPVTVKFRLGWDKGSINCVEFAKAMEAAGVSAVAVHGRTRTQMY-AGTANWDY 171 Query: 186 IGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIP 231 I +++Q ++IPVIANG+++D +A + +G D MIGRG P Sbjct: 172 IREVKQAVSIPVIANGDVFDGPAAAHILRYTGADMAMIGRGCFGNP 217 >UniRef50_D2U2K4 tRNA-dihydrouridine synthase B n=1 Tax=Arsenophonus nasoniae RepID=D2U2K4_9ENTR Length = 458 Score = 107 bits (268), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 71/199 (35%), Positives = 109/199 (54%), Gaps = 10/199 (5%) Query: 67 VQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAM 126 VQ+ G P +A A V G+ +D+N GCP+K VN G+ LL+ PELI + A+ Sbjct: 98 VQIAGSDPDEMATAARINVANGAQIIDINMGCPAKKVNRKLAGSALLRYPELIEKILLAV 157 Query: 127 REAVPAHLPVSVKVRLGWDSGEKK-FEIADAVQQAGATELVVHGRTKEQGYRAEHIDWQA 185 AV +PV++KVR GW E+ +IA ++ G + +HGRT+ + ++ + Sbjct: 158 VNAV--DVPVTLKVRTGWSPEERNCIKIAQLAERCGIQAVTIHGRTRACLFNGA-AEYDS 214 Query: 186 IGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK-YNE--- 241 I +Q + IP+IANG+I D A+ + +G DA+MIGR A P + R ++ Y E Sbjct: 215 IRAAKQNVTIPIIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLETGE 274 Query: 242 --PRMPWPEVVALLQKYTR 258 P MP EV L+Q + + Sbjct: 275 LLPPMPIAEVQCLMQAHVK 293 >UniRef50_D0NNQ3 tRNA-dihydrouridine synthase, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0NNQ3_PHYIN Length = 377 Score = 107 bits (267), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 65/168 (38%), Positives = 88/168 (52%), Gaps = 5/168 (2%) Query: 67 VQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAM 126 VQ G P+ + AA+ VE VDLN GCP G+ L+ D E + K + Sbjct: 83 VQFCGNDPKTVLA-AAKMVEGHCDAVDLNLGCPQGIARKGHYGSFLMHDKETVKATVKTL 141 Query: 127 REAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRA-EHIDWQA 185 + ++PV+VK+R+ D E E AD +Q+AG L VHGRTKE A ++W Sbjct: 142 SAGL--NIPVTVKIRVFPDDNET-LEFADMLQEAGCDLLTVHGRTKEMNKTAVREVNWDI 198 Query: 186 IGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNL 233 I I++RL IPVIANG I + +C+ +GCD VM G L P L Sbjct: 199 IRRIKERLTIPVIANGGIETHEDIARCLEATGCDGVMSSEGLLENPAL 246 >UniRef50_C1ZB06 tRNA-dihydrouridine synthase n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZB06_PLALI Length = 381 Score = 107 bits (266), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 86/253 (33%), Positives = 119/253 (47%), Gaps = 24/253 (9%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHR--ICPELQNASRT 59 R LAP+ G R L E+ L T+ V V +LL F + I L + Sbjct: 50 RYGLAPLAGYTQRPFRVALRELGGMGLATTDLVHAV-KLLSNNAFSQQLIATSLLDQP-- 106 Query: 60 PSGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELI 119 + VQL G P +A A +LG GVDLN GCP VN GGGA L+ DP Sbjct: 107 -----LSVQLFGADPTHVATAARWLEDLGYEGVDLNMGCPMAKVNSQGGGARLMCDP--- 158 Query: 120 YQGAKAMREAVPA--HLPVSVKVRLGWDSGEKKFE-IADAVQQAGATELVVHGRTKEQGY 176 GA + V A +PV+VK+RLGWD+ +A ++ GA + +HGRT+ QG+ Sbjct: 159 -TGATRLVALVVASVSIPVTVKMRLGWDAQSLSAPLLARQFEEVGAAAITIHGRTRAQGF 217 Query: 177 RAEHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRV 236 + + +IPVI NG++ + A +GC AV IGRGA+ P + R Sbjct: 218 SGKVSREGIAATVAAVQSIPVIGNGDVRTVEDAISMRRETGCAAVAIGRGAMLDPWIFRK 277 Query: 237 V-------KYNEP 242 + +Y EP Sbjct: 278 LHDFEMTGQYAEP 290 >UniRef50_B8FH09 Dihydrouridine synthase DuS n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FH09_DESAA Length = 328 Score = 106 bits (265), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 75/235 (31%), Positives = 110/235 (46%), Gaps = 17/235 (7%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFV--RVVDQLLP--VKVFHRICPELQNAS 57 R++LAPM G+ RE++ Y L T + V P VF EL + Sbjct: 11 RLILAPMAGLTHIAFREVMALYGGYGLLYTGMAGAKSVPHENPKVSTVFSWREKELDHTV 70 Query: 58 RTPSGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPE 117 Q+ G P+ +A+ A R G +GVD+NCGC ++ + GA LL P+ Sbjct: 71 ---------CQIFGSVPETMAKAAERIEAEGFFGVDINCGCSARAICRFDSGAALLAKPD 121 Query: 118 LIYQGAKAMREAVPAHLPVSVKVRLGW-DSGEKKFEIADAVQQAGATELVVHGRTKEQGY 176 L Q +A+R+AV ++PV VK R GW D +A GA L+ H R Sbjct: 122 LAAQVVRAVRKAV--NIPVIVKFRTGWKDDPAHAVSMARLFCDEGADALIFHPRVAPD-L 178 Query: 177 RAEHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIP 231 R W+ IG ++ + +PV NG + A + +++SGCD V +GR AL P Sbjct: 179 RTRPPKWEYIGLVKDAVKVPVFGNGNVISLDDAAKMLSMSGCDGVALGRIALAQP 233 >UniRef50_C6C170 Dihydrouridine synthase DuS n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6C170_DESAD Length = 323 Score = 106 bits (265), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 69/232 (29%), Positives = 120/232 (51%), Gaps = 8/232 (3%) Query: 60 PSGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELI 119 P + VQL G PQ ++ + ++ G DLN GCP K V +GGG+ L DP+ + Sbjct: 61 PEDNPLVVQLFGGEPQDYSDTMPQLIDEGYSFFDLNSGCPVKKVLKTGGGSALHLDPDRL 120 Query: 120 YQGAKAMREAVPAHLPVSVKVRLGWDSGEKKF-EIADAVQQAGATELVVHGRTKEQGYRA 178 + A AM V V VK+RLG+ +GE F EIA ++ G L +H R +Q + Sbjct: 121 VETASAMVR-VAGEGKVGVKIRLGFMNGEDNFLEIAKRLEDTGVAWLTMHPRYAKQMFSG 179 Query: 179 EHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNL-SRVV 237 + DW + ++Q ++IPVI +G+++ + +C+ +G D +M RGAL P + +R + Sbjct: 180 QA-DWSKLAVLKQNVSIPVIGSGDLFTAEDGMECIKQTGIDGIMFARGALFDPEIFARYL 238 Query: 238 K-YNEPR---MPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYD 285 K ++P+ +P ++ ++++ + + D +I+ L K D Sbjct: 239 KLLDDPKCATLPPFDLGKTMEEHINMTRDFDGSNRSFRKIRSILPRYAKGMD 290 >UniRef50_Q12U52 tRNA-dihydrouridine synthase n=2 Tax=Archaea RepID=Q12U52_METBU Length = 318 Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 80/243 (32%), Positives = 123/243 (50%), Gaps = 21/243 (8%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVR---VVDQLLPVKVFHRICPELQNASRT 59 +LLAP+ V + L L+ + LC TE + VV + C E Sbjct: 12 LLLAPLAEVTN-LAFRLMCKKYGASLCFTEMISSDAVVYGNASSAMRGITCDE-----ER 65 Query: 60 PSGTLVRVQLLGQFPQWLAENAARAVELGSWG--VDLNCGCPSKTVNGSGGGATLLKDPE 117 P G +QL G P+ + E AA +E + +D+N GCP+ + +G G+ LL+ PE Sbjct: 66 PFG----LQLFGNSPEVITE-AALVLEDMFYPDMIDINLGCPAPVITNAGCGSALLESPE 120 Query: 118 LIYQGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYR 177 L+ + E V PV+ K+R+ +S ++A ++ AG + VHGRT EQGY Sbjct: 121 LVSDIFSTLCEGVDT--PVTAKIRV-LESRAATLDMAHRLEDAGVCAITVHGRTCEQGYS 177 Query: 178 AEHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPN-LSRV 236 D I++ L+IPVI NG+I D SA++ + +GCD +MIGR A+ P+ R+ Sbjct: 178 GT-ADHSYAKLIKEELSIPVIVNGDIRDGVSAEKVLEYTGCDGLMIGRAAMGDPHVFHRI 236 Query: 237 VKY 239 +Y Sbjct: 237 SRY 239 >UniRef50_UPI0000D52F94 Dihydrouridine synthase TIM-barrel protein nifR3 n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=UPI0000D52F94 Length = 338 Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 80/257 (31%), Positives = 122/257 (47%), Gaps = 29/257 (11%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFV-------RVVDQLLPVKVFHRICPELQN 55 + LAPM GV D L LL + D +TEF + + L V+ R P + Sbjct: 14 IFLAPMAGVTD-LAYRLLAKECGADFTVTEFTAASGLTRKNTNSWLKVETDPREKPFIP- 71 Query: 56 ASRTPSGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKD 115 Q+ G +A+ +E S +D+N GCP+ V + GA LL+D Sbjct: 72 ------------QIFGGDISEMAKTVG-MLEDRSDVIDINFGCPAPKVCRNDAGAALLRD 118 Query: 116 PELIYQGAKAMREAVPAHLPVSVKVRLGWDSG-EKKFEIADAVQQAGATELVVHGRTKEQ 174 P+ + + E+ ++P++VK+RLG SG EI+ + G + VHGRT Q Sbjct: 119 PDKVVSMVRRCIEST--NVPITVKMRLGTGSGPNTALEISKRLADEGVMRICVHGRTLRQ 176 Query: 175 GYRAEHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLS 234 Y DW I +I ++IPVIANG++ D +SA+ C+ + +MIGRGA+ P + Sbjct: 177 RYSG-IADWDQIKEISNSVDIPVIANGDVVDTKSAELCLEATNAGGLMIGRGAIGRPTIF 235 Query: 235 RVVKYNEPRMPWPEVVA 251 +K+ M W A Sbjct: 236 HEIKHG---MGWSHKTA 249 >UniRef50_D1AZV6 Dihydrouridine synthase DuS n=7 Tax=Campylobacteraceae RepID=D1AZV6_SULD5 Length = 312 Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 68/205 (33%), Positives = 113/205 (55%), Gaps = 8/205 (3%) Query: 88 GSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVSVKVRLGWDSG 147 G G+DLNCGCP + G++LL + + + + + ++ S KVRLG+++ Sbjct: 91 GIAGIDLNCGCPVPKMVAQEAGSSLLLNLDHMQRVIETIKTYSNKRY-TSAKVRLGFNTK 149 Query: 148 EKKFEIADAVQQAGATELVVHGRTKEQGYRAEHIDWQAIGDIRQRLNIPVIANGEIWDWQ 207 + IA A + AGA + +HGRT+ Y+AE +D+QAI + R + IPVIANG+I + Sbjct: 150 IPEL-IAKACENAGADFMSMHGRTRSGAYKAE-VDYQAIAEARAAVKIPVIANGDITSLE 207 Query: 208 SAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNEPRMPWPEVVAL-LQKYTRL-EKQGDT 265 A M+++GC +MIGRGAL P + +K + +++ + L+ Y + E G+ Sbjct: 208 KALHVMSVTGCKNLMIGRGALGNPWIFYQLKNGLHHVEKTKILEIVLEHYDAMVEFYGEK 267 Query: 266 GLYHVARIKQWLSYLRKEYDEATEL 290 G V+ ++ L K + EA+E Sbjct: 268 G---VSIFRKHLHTYSKGFREASEF 289 >UniRef50_B2ULM0 TIM-barrel protein, nifR3 family n=3 Tax=Verrucomicrobia RepID=B2ULM0_AKKM8 Length = 334 Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 78/241 (32%), Positives = 123/241 (51%), Gaps = 14/241 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 + LAPM GV D + R + E+ D+ +TEFV + +L +R +++NA R P G Sbjct: 19 LFLAPMAGVTDPIFRTICKELG-VDVMVTEFVSA-EGILQAWERNRRYTKIENAHR-PIG 75 Query: 63 TLVRVQLLGQFPQWLAENAARAV---ELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELI 119 +QL G + E AAR + E + +D+N GCP V G GG++LLKD L+ Sbjct: 76 ----IQLFGADGNHMGE-AARIILDHEKPDF-IDINFGCPVPKVVGKNGGSSLLKDLPLL 129 Query: 120 YQGAKAMREAVPAHLPVSVKVRLGWD-SGEKKFEIADAVQQAGATELVVHGRTKEQGYRA 178 A + +AV +PV+ K+R+GWD + ++ G + + +HGRT+ Q Y Sbjct: 130 ASVAGGVVKAVGERIPVTAKIRIGWDFQSLCAMDACRLLENEGISMITIHGRTRSQQYSG 189 Query: 179 EHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK 238 +W I + + +++PVI NG+I Q+ + VMIGR A+ P + K Sbjct: 190 T-ANWDIIDECARAMSVPVIGNGDISTPQAVAYVKENTAVSGVMIGRAAMENPWIFGDAK 248 Query: 239 Y 239 Y Sbjct: 249 Y 249 >UniRef50_C8X244 Dihydrouridine synthase DuS n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X244_DESRD Length = 328 Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 76/290 (26%), Positives = 139/290 (47%), Gaps = 15/290 (5%) Query: 5 LAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGTL 64 LAP+ G D R LL N + TE + V + + + + P+ T Sbjct: 21 LAPLAGFTDLPFR-LLCRENGARVAHTEMISVKGLIYNSQGTWDLL------ATAPADTP 73 Query: 65 VRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAK 124 + VQL G P A+ E G +DLN GCP + V +G GA L++DP+ + + + Sbjct: 74 LVVQLFGADPDCFAQPVRWLTERGFHWIDLNAGCPVRKVIKTGAGAALMEDPQRLVRIMQ 133 Query: 125 AMREAVPAHLPVSVKVRLGWD-SGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHIDW 183 + A P VK+RL D S + + D + +AG + + +H RT QGY W Sbjct: 134 TIGRAAPVQ--AGVKLRLPADGSTDGLLRLRDTLARAGVSWITLHPRTARQGY-GGLAQW 190 Query: 184 QAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSR----VVKY 239 A+ + + +P++A+G++W+ Q+A++C +G D +M RGAL+ P + + Sbjct: 191 SALSRMAESSPVPIVASGDLWNAQAARRCFEQTGVDGIMFARGALHNPRIFKADLATGAE 250 Query: 240 NEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATE 289 +P + AL++++ +L ++ D + +++ ++ K + A + Sbjct: 251 EDPCTDTASIAALVRRHGQLCRRYDPSRSMLLKMRSFIPRYVKGFPGAKQ 300 >UniRef50_Q09504 Uncharacterized tRNA-dihydrouridine synthase-like protein C45G9.2 n=2 Tax=Chromadorea RepID=YQI2_CAEEL Length = 284 Score = 105 bits (263), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 66/168 (39%), Positives = 88/168 (52%), Gaps = 5/168 (2%) Query: 67 VQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAM 126 VQ P L+E AA V S GVDLNCGCP V G G+ LL PEL+ + Sbjct: 53 VQFATDDPFVLSE-AAEMVYKCSTGVDLNCGCPKHDVRSKGFGSALLSKPELLADMVRQT 111 Query: 127 REAVP-AHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHIDWQA 185 R +P VS+K+R+ D EK ++ + AG T L VHGRT Q RAE ID QA Sbjct: 112 RARIPDPDFSVSLKIRINHDI-EKTVDLCRKAEAAGVTHLTVHGRTPSQ--RAEPIDIQA 168 Query: 186 IGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNL 233 + ++ +++P+IANG I + A +G D +M G L+ P L Sbjct: 169 LRIVKDSVSVPIIANGGITTREEALFLAEQTGVDGIMAANGLLDNPAL 216 >UniRef50_B0S913 tRNA-dihydrouridine synthase n=7 Tax=Leptospira RepID=B0S913_LEPBA Length = 337 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 75/236 (31%), Positives = 114/236 (48%), Gaps = 23/236 (9%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 V L+PM G+ DS R++ T+ TEFV +QL +L NA Sbjct: 13 VALSPMAGISDSPYRQI-TKRFGSAFSYTEFVST-EQL-----------KLGNAKSLDMF 59 Query: 63 TLVRV------QLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDP 116 V + Q+ G + + A E +DLN GC V+ +G GA LLK+ Sbjct: 60 RFVEMERPIVFQIFGSDLDTVVNASEIAAEQKPDIIDLNMGCSVSKVSHNGSGAGLLKNI 119 Query: 117 ELIYQGAKAMREAVPAHLPVSVKVRLGWDSGEKKF-EIADAVQQAGATELVVHGRTKEQG 175 L + + +R +LPV+ K+RLGWD+ + E ++ +G + + VHGRTK Sbjct: 120 RLAGKMIEGIRNR--TNLPVTAKIRLGWDANSLNYLETLKVLEDSGVSAISVHGRTKAMA 177 Query: 176 YRAEHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIP 231 Y DW AIG+I+ R N+P+ NG++ ++ A + G D V+IGR A+ P Sbjct: 178 YTG-IADWNAIGEIKSRANVPIYGNGDVQSYKEALEKKKTYGVDLVLIGRKAIGNP 232 >UniRef50_B2UM21 Dihydrouridine synthase DuS n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UM21_AKKM8 Length = 352 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 83/299 (27%), Positives = 135/299 (45%), Gaps = 40/299 (13%) Query: 1 MRVLLAPMEGVLDSLVRELLTEVNDY-DLCITEFVRVVDQLLPVKVFHRICPE-LQNASR 58 M + LAPM+ V D L ++N D ITE+ R V ++ P L++ Sbjct: 5 MLLALAPMKDVTDLAFLNTLKDLNSLPDYFITEYFRTVAH------HKKMSPYILRSIDE 58 Query: 59 TPSGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPEL 118 P+G + QL+G P++LA +A +E GVDLN GCP+ V G +L+ + Sbjct: 59 NPTGRPIYGQLVGHEPEYLARDAQVLMEHACAGVDLNMGCPAPIVCRRNAGGGMLRSLKA 118 Query: 119 IYQGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRA 178 + A+R+ +P +VK RLG+++ ++ I + + +H RT +GYR+ Sbjct: 119 MDAALGALRDVLPPGA-FTVKCRLGYETPDEFERILPVIASHSPDRVCIHARTVREGYRS 177 Query: 179 ----EHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLS 234 E + W A L PV+ANG I D +A+ + ++ +MIGR AL Sbjct: 178 PVHPEWVKWAA-----GMLKCPVVANGNIVDAATAEAWVRLARPAGLMIGRAAL------ 226 Query: 235 RVVKYNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQH 293 R PW Q ++R + L + L Y+R+ Y+ E+ +H Sbjct: 227 --------RNPW----IFSQLHSRFQGHPAADL----TFRNVLHYIRRLYERTREMQEH 269 >UniRef50_Q9VJ06 CG10495 n=12 Tax=Drosophila RepID=Q9VJ06_DROME Length = 396 Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 54/145 (37%), Positives = 81/145 (55%), Gaps = 2/145 (1%) Query: 91 GVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVSVKVRL--GWDSGE 148 G+DLNCGCP G G +L+ PEL++Q + +R +P VSVK+RL G +S + Sbjct: 105 GIDLNCGCPQSWAMAKGYGCGMLRQPELVHQVVQEVRRTLPGDFSVSVKMRLLGGEESLQ 164 Query: 149 KKFEIADAVQQAGATELVVHGRTKEQGYRAEHIDWQAIGDIRQRLNIPVIANGEIWDWQS 208 + ++A ++ AG T L +HGRT Q + + +D A+ +RQ L IP+I NG + ++ Sbjct: 165 RTIDLARQLESAGVTFLTLHGRTPAQKHSKDTLDIPAMSQVRQSLQIPLIVNGNVESYRD 224 Query: 209 AQQCMAISGCDAVMIGRGALNIPNL 233 A +G VM RG L P L Sbjct: 225 ACDMHEQTGAAGVMAARGLLANPAL 249 >UniRef50_Q2RM54 Dihydrouridine synthase TIM-barrel protein nifR3 n=6 Tax=Clostridia RepID=Q2RM54_MOOTA Length = 334 Score = 105 bits (261), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 98/317 (30%), Positives = 154/317 (48%), Gaps = 22/317 (6%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 +++APM G D + R L E L TE + + K H L + P Sbjct: 16 LIMAPMAGYTDRVFRLLAREAGA-ALTYTEMISAQGLIYNNKNTH----ALLDLKGEPGP 70 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKD-PELIYQ 121 V VQL G+ P+ +A AV G+ +DLN GCP+ + +G G+ L++D P Sbjct: 71 --VAVQLFGREPEIMAAATRIAVAAGAAIIDLNMGCPTPKIVKNGEGSALMRDLPRAAAI 128 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 A +R A P +PV+VK+RLGWD E A AV AGA + +HGRT+ Q Y + Sbjct: 129 VAAMVRAAGP--VPVTVKMRLGWDEDSINVVEAARAVVYAGAAAVAIHGRTRSQFY-SGR 185 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 DW +++ +++PVI NG++ + A +A +GCD VM+GRGA+ P L ++ Sbjct: 186 ADWSYFRRVKEAVDVPVIGNGDVRTARDAVTMLAETGCDGVMVGRGAVGNPWLLTAIRAV 245 Query: 241 EPRMPWPEVVALLQKYTR--------LEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQ 292 P P V + + T +E +G+T V +++ L+ + A L Q Sbjct: 246 LEGRPEPPPVDVRTRMTMACRHLKLLVELKGET--TAVKEMRKHLACYFRGLPGAARLRQ 303 Query: 293 HVRVLNNSPDIARAIQA 309 + L + ++ AI+A Sbjct: 304 QINTLTTAAEVIAAIKA 320 >UniRef50_Q5M689 Possible transcriptional regulator n=25 Tax=Streptococcus RepID=Q5M689_STRT2 Length = 350 Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 76/234 (32%), Positives = 118/234 (50%), Gaps = 16/234 (6%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPV-KVFHRICPELQNASRTP 60 R +LAPM GV +S R + E + L + E + L K H + + + P Sbjct: 43 RTVLAPMAGVTNSAFRTIAKEFS-AGLVVMEMISEKGLLYNNEKTLHMLHID---ENEHP 98 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWG--VDLNCGCPSKTVNGSGGGATLLKDPEL 118 + +QL G + L + AA ++ + VD+N GCP V + GA LKDP+ Sbjct: 99 ----MSIQLFGGDAEGL-KRAADFIQTNTKADIVDINMGCPVNKVVKNEAGAKWLKDPDK 153 Query: 119 IYQGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRA 178 IY K + + +P++VK+R GW + E A A + AG + L +HGRT+EQ Y Sbjct: 154 IYHIVKEVTSVLD--IPLTVKMRTGWSDSDLAVENALAAESAGVSALAMHGRTREQMYTG 211 Query: 179 EHIDWQAIGDIRQRLN-IPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIP 231 H D + + + + + IP I NG++ + Q A+ + G DAVM+GR A+N P Sbjct: 212 -HCDHETLARVAKAITKIPFIGNGDVRNVQDAKLMIEELGVDAVMVGRAAMNNP 264 >UniRef50_A6CBK4 Predicted TIM-barrel enzyme, possibly dehydrogenase, nifR3 family protein n=2 Tax=Planctomycetaceae RepID=A6CBK4_9PLAN Length = 365 Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 72/236 (30%), Positives = 113/236 (47%), Gaps = 11/236 (4%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 R LL+P+ G + R ++ E+ L T+ V L + LQ P Sbjct: 29 RYLLSPLAGYTNLPFRRIVRELGGVGLATTDLVNARGLLEGSE------KTLQLTQTCPE 82 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + VQ+ G PQ + + A G +D+N GCP + G GA+++ P Sbjct: 83 DSPFAVQIFGSEPQQMKDAAQLLESRGVHSIDINMGCPVNRIVKGGAGASMMCRPSDTVS 142 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKKFE-IADAVQQAGATELVVHGRTKEQGYRAEH 180 + + EAV +PVSVK+RLGWD E + ++ G + +HGRT+EQG+R Sbjct: 143 LVQTVVEAV--KIPVSVKMRLGWDDSELSAPFFSREFEKVGVVAVAIHGRTREQGFRGV- 199 Query: 181 IDWQAIGDIRQRLN-IPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSR 235 ++ I + + ++ IPVI NG++ + A + +GC V IGRGAL P + R Sbjct: 200 VNHDGIRRVVEAVDSIPVIGNGDVTNVAEADFMLKTTGCAGVSIGRGALANPWIFR 255 >UniRef50_B9XLX7 Dihydrouridine synthase DuS n=3 Tax=Verrucomicrobia RepID=B9XLX7_9BACT Length = 340 Score = 104 bits (259), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 78/297 (26%), Positives = 140/297 (47%), Gaps = 15/297 (5%) Query: 5 LAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGTL 64 LAPM+ V D ++++ D+ TE+ RV K L++ ++ P+G Sbjct: 11 LAPMQDVTDLPFMKVISSYGSADVYYTEYFRVHGSSNLEKWI------LESITKNPTGQP 64 Query: 65 VRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAK 124 V Q++G L +A + VDLN GCP+ V G LL++P+ + Sbjct: 65 VIAQMIGNDIPSLVRSAKELQQYPIVAVDLNLGCPAPIVYRKCAGGGLLREPKRVDSILG 124 Query: 125 AMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHIDWQ 184 A+R+A+ +VK R+G+DS E+ + L VHGRT ++ YR+E + + Sbjct: 125 ALRDAISVKF--TVKTRIGFDSTGVFDELLPIFAKHSIDLLTVHGRTVQEMYRSE-VHYD 181 Query: 185 AIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNEPRM 244 I Q ++ PV+ANG ++ + A++ + +G +MIGRG + P L ++++ Sbjct: 182 FIARAAQAVSCPVLANGNVYSAKKAEEVLQFTGARGLMIGRGVIRNPWLFHQIRHHRRGE 241 Query: 245 P--WPEVVALLQK----YTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVR 295 P P+ +LQ Y + L V ++K++L+Y+ + + +R Sbjct: 242 PIFIPKGHDVLQYIRTLYDAVRPPDIRELAQVQKMKKYLNYVGLGVEPTGQFLHQIR 298 >UniRef50_Q54XQ6 tRNA-dihydrouridine synthase 1-like protein n=1 Tax=Dictyostelium discoideum RepID=Q54XQ6_DICDI Length = 435 Score = 104 bits (259), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 70/240 (29%), Positives = 121/240 (50%), Gaps = 19/240 (7%) Query: 57 SRTPSGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDP 116 S P + VQ G P+W+ + AA+ +E +DLN GCP + G+ LL P Sbjct: 101 STCPEDRPLVVQFCGNEPEWVVK-AAKYIEDHCDAIDLNLGCPQQIARRGNYGSFLLDKP 159 Query: 117 ELIYQGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQ-G 175 +I + + + + +P+ K+RL + + ++A +Q+AG L +HGRTKEQ G Sbjct: 160 HIILPIVQELHKHI--KVPIFCKIRL-LPNLDDTIKLALQLQEAGCQLLTIHGRTKEQKG 216 Query: 176 YRAEHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSR 235 + + +W+AI IR++L+IPVIANG + ++ +C+ +G D VM G L P+ Sbjct: 217 HNSGIANWKAIRTIREQLSIPVIANGSVVQYEDIDRCLEETGADGVMSAEGILANPSF-- 274 Query: 236 VVKYNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVR 295 ++ ++P +V +T + K HV R S++ K E +++ +R Sbjct: 275 ---FSGLKVPIYQVAREYIDFTEIYKTS----IHVTR-----SHIFKMLKEKLDVYSDLR 322 >UniRef50_C9RMP3 Dihydrouridine synthase DuS n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RMP3_FIBSS Length = 392 Score = 103 bits (257), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 88/298 (29%), Positives = 140/298 (46%), Gaps = 26/298 (8%) Query: 3 VLLAPMEGVLDSLVREL--LTEVNDYDLCITEFVRVVDQLLPVKVFHR---ICPELQNAS 57 +L+PM+GV D+ R L + + L ++EFV + H+ PE Sbjct: 24 TILSPMDGVTDAPFRRLCRVLSGDRMGLLVSEFVPTDGDAVFNPDGHKQLKFFPE----- 78 Query: 58 RTPSGTLVRVQLLGQFPQWLAENAARAVE-LGSWGVDLNCGCPSKTVNGSGGGATLLKD- 115 P G VQ+ G+FP +A A + E +++N GCP+ V G G G+ LL+D Sbjct: 79 ERPFG----VQIFGRFPDRMAAAAGKIAERYHPEFIEVNAGCPAPKVAGKGSGSGLLRDL 134 Query: 116 PEL--IYQGAKAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTK 172 P L I KA+ +A +P+++K R+GWD E + G L VHGRT+ Sbjct: 135 PRLQEILHDVKAVLDAKTPEIPLTLKCRIGWDDDSINVMETLKIAEGEGVEMLTVHGRTR 194 Query: 173 EQGYRAEHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIP- 231 QGY +W IG + IPVI NG++ + A++ + G V IGRGA++ P Sbjct: 195 LQGYNG-LANWDWIGKVAAAAKIPVIGNGDVNSVECARERINTYGVSGVSIGRGAMHNPW 253 Query: 232 NLSRVVKYNEPR----MPWPEVVALLQKYTRLE-KQGDTGLYHVARIKQWLSYLRKEY 284 ++ E R + E + + Y + + + G T + + R+KQ + L K + Sbjct: 254 IFGQIADAWEGREKHVITAQEALDVFPLYYKFKIEDGATEMNAMGRMKQLAARLCKGF 311 >UniRef50_B0SXE6 TIM-barrel protein, nifR3 family n=2 Tax=Caulobacteraceae RepID=B0SXE6_CAUSK Length = 335 Score = 103 bits (257), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 81/240 (33%), Positives = 125/240 (52%), Gaps = 14/240 (5%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 RV +APM GV D RE T + V +++ F R P+ + Sbjct: 15 RVWIAPMTGVSDLPFRETATRLG--------AAYVATEMVACAEFARGRPDAVRRAAVGD 66 Query: 62 G-TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGS-GGGATLLKDPELI 119 G L+ VQL+G+ P ++ + A A E G+ +DLN GCPSK V G G+ L+++P+L Sbjct: 67 GLPLMVVQLVGRDPTFMGQGARMAAEAGAQIIDLNFGCPSKQVTGGVASGSALMREPDLA 126 Query: 120 YQGAKAMREAVPAHLPVSVKVRLGWDSGEKKF-EIADAVQQAGATELVVHGRTKEQGYRA 178 +PV+VK+RLGWD + +IA AGA + VHGRT+ Q Y+ Sbjct: 127 EA--LVAAAVRAVDVPVTVKMRLGWDDDSRNAADIARRAVDAGAQAITVHGRTRCQFYKG 184 Query: 179 EHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK 238 DW A+ ++ +++PV+ NG+I D +A+ + SG D VMIGRG P +++ ++ Sbjct: 185 VA-DWSAVAAVKAAVSVPVLVNGDIIDGDTARLALEQSGADGVMIGRGVYGRPWIAQAIE 243 >UniRef50_UPI000186DA49 tRNA-dihydrouridine synthase, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186DA49 Length = 332 Score = 103 bits (257), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 82/228 (35%), Positives = 118/228 (51%), Gaps = 17/228 (7%) Query: 14 SLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGTLVRVQLLGQF 73 SLVR+ D DLC T + + D + + RI +++ +P V VQ Sbjct: 29 SLVRQY-----DCDLCFTPMI-MADSFIKSEK-ARINEFTTSSNDSP----VIVQFAANN 77 Query: 74 PQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAH 133 +E AA+ V S GVDLNCGCP + G GA LL +PE I ++ + + Sbjct: 78 TFDFSE-AAKLVFPFSDGVDLNCGCPQRWAMKIGIGAQLLSEPETIKDIVLNVKNQISCN 136 Query: 134 LPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHIDWQAIGDIRQRL 193 VSVK+RL D + ++ +++ G T L +HGRTKEQ R+E ++ AI DI + Sbjct: 137 YSVSVKLRLLNDI-KSTVDLCKKLEKTGVTFLTIHGRTKEQ--RSEPVNIAAIKDIVDSV 193 Query: 194 NIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNE 241 IP+IANG++ Q AQ ++GC VM RG L P+L + YNE Sbjct: 194 QIPIIANGDVKTLQDAQLLQQLTGCQGVMSARGLLQNPSLFQ--GYNE 239 >UniRef50_Q0F181 Dihydrouridine synthase TIM-barrel protein nifR3 n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F181_9PROT Length = 341 Score = 103 bits (257), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 79/232 (34%), Positives = 122/232 (52%), Gaps = 15/232 (6%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFV--RVVDQLLPVKVFHRICPELQNASRTP 60 ++LAPM G+ D R + L +TE + R VD + + R+ EL + Sbjct: 20 LVLAPMAGITDLPFRRICKRFG-VGLMVTEMIASRAVD--MGRERTERMA-ELGDDEHP- 74 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 V +Q+ G P+++ E A AV G+ VD+N GCP K + G+ +L+D L+ Sbjct: 75 ----VSIQIAGSDPEFVTEAARWAVGHGADFVDINMGCPVKKICKQVAGSAMLRDEALVA 130 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKFE-IADAVQQAGATELVVHGRTKEQGYRAE 179 + A+ AV PV++K+R GWD K + IA + +G L VHGRT+ Q + Sbjct: 131 RVLAAVVAAVDV--PVTLKIRTGWDDQSKNVQNIARIAEDSGIQLLTVHGRTRAQMFHG- 187 Query: 180 HIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIP 231 H W+ IG + ++IPVI NG+I D +SA++ + +S CD VM+GR P Sbjct: 188 HACWEDIGLAKAAVSIPVIGNGDIVDAESAREMIRVSNCDGVMVGRAVQGNP 239 >UniRef50_A8Y3E7 Putative uncharacterized protein n=2 Tax=Caenorhabditis briggsae RepID=A8Y3E7_CAEBR Length = 283 Score = 103 bits (257), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 65/168 (38%), Positives = 87/168 (51%), Gaps = 5/168 (2%) Query: 67 VQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAM 126 VQ P LAE AA V S GVDLNCGCP V G G+ LL PEL+ + Sbjct: 51 VQFATDDPFVLAE-AAEMVYSCSSGVDLNCGCPKHDVRSKGFGSALLSKPELLADMVRQT 109 Query: 127 REAVP-AHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHIDWQA 185 R + + VS+K+R+ + EK ++ + AG T L VHGRT Q AE ID +A Sbjct: 110 RARISDENFSVSLKIRVNKEI-EKTVDLCRKAESAGVTHLTVHGRTPSQ--HAEPIDIEA 166 Query: 186 IGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNL 233 I ++ + +P+IANG I + Q A +G D +M G L+ P L Sbjct: 167 IRLVKSAVKVPIIANGGITNLQEAMNLAEKTGVDGIMAANGLLDNPAL 214 >UniRef50_Q7QCT0 AGAP002791-PA (Fragment) n=3 Tax=Culicidae RepID=Q7QCT0_ANOGA Length = 396 Score = 103 bits (257), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 56/144 (38%), Positives = 81/144 (56%), Gaps = 2/144 (1%) Query: 91 GVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVSVKVRLGWDSGEKK 150 GVDLNCGCP + G G+ LLK PELI +R +P+ VSVKVRL + K+ Sbjct: 105 GVDLNCGCPQRWAMAEGYGSALLKTPELIADMLGTVRRNMPSTFSVSVKVRLLSSTDHKR 164 Query: 151 -FEIADAVQQAGATELVVHGRTKEQGYRAEHIDWQAIGDIRQRLNIPVIANGEIWDWQSA 209 ++ ++ G T L VHGRT + + + A+ +I+Q + IP++ANG+I+ A Sbjct: 165 TIDMCRQLEATGITFLTVHGRTAPEMTKVP-VHKDALQEIKQSIGIPMVANGDIFTLDDA 223 Query: 210 QQCMAISGCDAVMIGRGALNIPNL 233 +Q + CD VM RG L+ P L Sbjct: 224 EQMYLQTKCDGVMTARGILSNPAL 247 >UniRef50_B0VH62 Dihydrouridine synthase family protein n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VH62_9BACT Length = 321 Score = 103 bits (256), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 55/166 (33%), Positives = 90/166 (54%), Gaps = 2/166 (1%) Query: 67 VQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAM 126 +Q+ G P +A + L +D+N GCP K V G G+ L++ P L + K + Sbjct: 68 IQIFGSNPLIMARAVEVLLPLKPDFMDINMGCPVKKVIRKGAGSALMQTPSLAGKIVKEV 127 Query: 127 REAVPAHLPVSVKVRLGWDSGEKKF-EIADAVQQAGATELVVHGRTKEQGYRAEHIDWQA 185 + A+ +P+SVK R GW+ + + + +Q+ GA L +H RT Q + +W+ Sbjct: 128 KNALLGRIPLSVKFRSGWNFQNQNYLQFGLMLQECGADFLCLHPRTSSQMFSGTS-NWEQ 186 Query: 186 IGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIP 231 I ++Q + IPV+ NG+I + AQ+ + + CD +MIGRGAL P Sbjct: 187 IKILKQNVQIPVVGNGDIKTPEDAQRMITETNCDGIMIGRGALGKP 232 >UniRef50_D1U4K9 Dihydrouridine synthase DuS n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U4K9_9DELT Length = 339 Score = 103 bits (256), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 75/236 (31%), Positives = 115/236 (48%), Gaps = 18/236 (7%) Query: 5 LAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRI---CPELQNASRTPS 61 LAP+ G D R LL + + + +E V V + R+ CPE Sbjct: 13 LAPLAGYSDLPFR-LLVKRHGCAVACSEMVSVKGMTFGNEGTQRLIATCPEDDP------ 65 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + +QL G P V+LG DLN GCP + V SG G L++DP+ + + Sbjct: 66 ---MVLQLFGADPDLFGPVMDWLVDLGYRNFDLNAGCPVRKVLKSGSGVKLMEDPDTLVR 122 Query: 122 GAKAMREAVPAHL---PVSVKVRLGWDSGEKKF-EIADAVQQAGATELVVHGRTKEQGYR 177 A M E AH V VK RLG+D G + E+A ++ AG + +H R Q + Sbjct: 123 IASVMVERATAHARGGQVGVKFRLGFDKGNDTYLELARRLEDAGVHWVTLHPRYGRQMF- 181 Query: 178 AEHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNL 233 A DW +G +++ ++IPV+A+G+++ + +C+ +G DAVM RGAL P + Sbjct: 182 AGQADWSKLGLLKRAVSIPVVASGDLFTAEDGVRCVEETGVDAVMFARGALYDPAI 237 >UniRef50_Q7X346 Putative uncharacterized protein n=1 Tax=uncultured Acidobacteria bacterium RepID=Q7X346_9BACT Length = 355 Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 79/257 (30%), Positives = 124/257 (48%), Gaps = 8/257 (3%) Query: 28 LCITEFVRVV--DQLLPVKVFHRICPELQNASRTPSGTLVRVQLLGQFPQWLAENAARAV 85 LC+ R+ + L ++ + E R P VQL G P A AA Sbjct: 15 LCVELGARITVSEMTLARRLKQKRNSEFALIRRFPGEPCFGVQLAGNKPDETAWAAALVE 74 Query: 86 ELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVSVKVRLGWD 145 G+ VD+N GCP G GA++ + P+ + + +A++ +V ++PV+ K+RLGW+ Sbjct: 75 SRGADFVDINFGCPIDYFTRKGLGASIGRQPQRMRRLVEAIKGSV-TNIPVTAKIRLGWN 133 Query: 146 SGEKKF-EIADAVQQAGATELVVHGRTKEQGYRAEHIDWQAIGDIRQRLNIPVIANGEIW 204 ++ + + A A GA L VHGRT+ YR DW AI I + +PVI NG++ Sbjct: 134 DDDRNYLQQAQAAVDGGAAALFVHGRTRNARYRFA-ADWDAIARIVAAVPVPVIGNGDLL 192 Query: 205 DWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNEPRMPWPEVVALLQKYTRLEKQ-- 262 SGC AVM+ R AL P + R + E V L ++Y L ++ Sbjct: 193 FPHEIAAARERSGCAAVMVARAALIKPWIFREAVDGYWDITAEERVGLYRRYVTLAREHW 252 Query: 263 GDTGLYHVARIKQWLSY 279 GD + +ARI+ +L++ Sbjct: 253 GDDE-HGLARIRTFLNW 268 >UniRef50_C8QWB5 Dihydrouridine synthase DuS n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QWB5_9DELT Length = 335 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 97/315 (30%), Positives = 149/315 (47%), Gaps = 27/315 (8%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNA-SRTPS 61 +LLAPM G+ S +R L+ E L TE +L K P L R PS Sbjct: 20 LLLAPMAGLTHSALRRLVQEQGGVGLLSTE-------MLAAKRLPHENPTLSPYLVRHPS 72 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + QLL P +A A A ELG+ +DLN GCP+ + GGG+ L+++P+++ + Sbjct: 73 EQPLSFQLLLTSPAEVAAAVASAEELGAAAIDLNLGCPAPDIRRQGGGSRLMEEPQMVRR 132 Query: 122 GAKAMREAVPAHLPVSVKVRLGWD-SGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 + R LP+S K+RLG + + E+ ++ AG L VH R + + Y Sbjct: 133 LVQETRRRTA--LPLSAKIRLGEELNAERLRAFCLLLEDAGVDLLTVHARLRGEPY-GRK 189 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK-- 238 W+ +G ++ L IPV+ANG I+ A C+A SG D +MIGR A P L R + Sbjct: 190 PRWEWVGKVKHWLRIPVVANGGIFSAADAAACLAASGADGLMIGRAAAATPWLFRQLAEG 249 Query: 239 --------YNE-PRMPWPE-VVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEAT 288 ++E P E A+ +++ L K+ T + R+K++ Y + Y Sbjct: 250 WATDFAPGHDELSTAPSQEQKAAIYRRFCELLKESFTPERRLGRLKEFTHYYARNYQFGH 309 Query: 289 ELFQHVRVLNNSPDI 303 L V +SPD+ Sbjct: 310 HLAAAV---QSSPDL 321 >UniRef50_A0Z0J5 TRNA-dihydrouridine synthase B n=2 Tax=unclassified Gammaproteobacteria (miscellaneous) RepID=A0Z0J5_9GAMM Length = 352 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 79/250 (31%), Positives = 121/250 (48%), Gaps = 13/250 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 V LAPM GV D +REL E+ + + E + +LL + + G Sbjct: 26 VALAPMAGVTDLPMRELCVELG-AGMAVAEMLTSDPKLLASR------KSSLRRRHSAKG 78 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 L VQ++G PQ LA A + G+ +D+N GCP+K V G+ LL D + + + Sbjct: 79 GLRSVQIVGSEPQQLANAARLNADDGADVIDINMGCPAKKVCKKAAGSALLADEDRVAEI 138 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGEKK-FEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 KA+ AV +PV++K+R G ++ IA + AG L VHGRT+ ++ E Sbjct: 139 LKAVVSAV--DVPVTLKIRTGVSPQQRNGVAIAKIAEDAGIQLLTVHGRTRADRFKGE-A 195 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNE 241 ++ I I ++IPV+ANG+I A + +G +MIGR AL P L + + Sbjct: 196 EYHTIERIVDAVSIPVLANGDITTPAQALAVLQKTGAAGIMIGRAALGRPWLPGAIAQSL 255 Query: 242 P--RMPWPEV 249 R P P + Sbjct: 256 AGLRTPLPSL 265 >UniRef50_C5F231 Putative uncharacterized protein n=2 Tax=Helicobacter RepID=C5F231_9HELI Length = 317 Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 69/177 (38%), Positives = 105/177 (59%), Gaps = 5/177 (2%) Query: 92 VDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLP-VSVKVRLGWDSGEKK 150 +DLNCGCP+ V+ G G++LLKD + + + +RE + P +SVKVRLG+D + Sbjct: 95 LDLNCGCPAPKVSSHGSGSSLLKDLNKLVKILQLLRET--SVFPYLSVKVRLGFDK-KIP 151 Query: 151 FEIADAVQQAGATELVVHGRTKEQGYRAEHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQ 210 EIA+A+ + +VVHGRTK GY+ + ID+ +I I+Q + P+IANGEI Q A+ Sbjct: 152 LEIANALNDSPIDYVVVHGRTKSDGYKKDKIDYDSIRLIKQNIQHPLIANGEITSPQIAK 211 Query: 211 QCMAISGCDAVMIGRGALNIPNLSRVVKYN-EPRMPWPEVVALLQKYTRLEKQGDTG 266 + ++G + VMIGR A+ P + +K N E + + VAL + +GD G Sbjct: 212 KVQELTGAEGVMIGRAAIEKPWIFTQIKNNLEESIELRKQVALEHFDRTISFRGDYG 268 >UniRef50_C1DY86 Dihydrouridine synthase-like family protein n=1 Tax=Micromonas sp. RCC299 RepID=C1DY86_9CHLO Length = 495 Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 61/158 (38%), Positives = 88/158 (55%), Gaps = 4/158 (2%) Query: 92 VDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVSVKVRLGWDSGEKKF 151 +DLNCGCP G GA LLK P+ + + + + + LP++VK+RLG E Sbjct: 195 IDLNCGCPIHETWKRGLGAALLKKPKKLERLVRGIADGT--RLPLTVKIRLGAGGSEAPA 252 Query: 152 -EIADAVQQAGATELVVHGRTKEQGYRAEHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQ 210 ++A+AV+ AGA +++HGRTKEQ Y +W IG+I++ IPV+ NG+I + Sbjct: 253 RQLAEAVENAGAAAVIIHGRTKEQRY-TRAANWDLIGEIQRERGIPVVGNGDILTHYEHR 311 Query: 211 QCMAISGCDAVMIGRGALNIPNLSRVVKYNEPRMPWPE 248 +A SG A M GRGAL P + + V P PE Sbjct: 312 DRLARSGAHAAMTGRGALIKPWIFKEVAEGVEWAPTPE 349 >UniRef50_D2QXV2 Dihydrouridine synthase DuS n=4 Tax=Planctomycetaceae RepID=D2QXV2_9PLAN Length = 354 Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 72/204 (35%), Positives = 105/204 (51%), Gaps = 17/204 (8%) Query: 68 QLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMR 127 QL+G P A+ A R E G +D+N GCP K V G G L P++ + + R Sbjct: 77 QLMGAEPAEFAQGALRLAEAGFDVIDINFGCPVKKVLGRCRGGFHLSQPDVALEIVRRTR 136 Query: 128 EAVPAHLPVSVKVRLGWD----SGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHIDW 183 + VPAH+PV+VK+R G D S ++ FEI D AG + VHGRT Q Y W Sbjct: 137 DIVPAHIPVTVKMRRGLDDTQLSRDRFFEILDGAFAAGVAAITVHGRTVVQRYVGPS-RW 195 Query: 184 QAIGDIRQRLNIPVI-ANGEIWDWQSAQQCMAI---SGCDAVMIGRGALNIP---NLSRV 236 + ++++ + VI +G+++ SAQ C+A+ +G D V + RGA+ P + R Sbjct: 196 SFLTEVKRHVGSRVILGSGDLF---SAQDCLAMMRETGVDGVTVARGAIGNPWIFSQCRA 252 Query: 237 VKYNEPRMPWPEVVALLQKYTRLE 260 + EP P P + QK T LE Sbjct: 253 LDAGEPLPPPPTLFE--QKATILE 274 >UniRef50_Q30WR3 Dihydrouridine synthase family protein n=3 Tax=Deltaproteobacteria RepID=Q30WR3_DESDG Length = 376 Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 77/238 (32%), Positives = 108/238 (45%), Gaps = 23/238 (9%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 R+ LAPM G+ R++L L T R P +N +R+P Sbjct: 58 RLFLAPMAGLGHIAYRQVLESFGGCGLVFTGMCSA-----------RAVPT-ENPARSPV 105 Query: 62 GT-------LVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLK 114 + + QL G PQ +A A R G +GVD+N GC + G GA LL+ Sbjct: 106 FSWRPEELPALVCQLFGADPQDMAAAARRVESEGFFGVDINMGCSVAPIVKKGCGADLLR 165 Query: 115 DPELIYQGAKAMREAVPAHLPVSVKVRLGWDSG-EKKFEIADAVQQAGATELVVHGRTKE 173 DPE + A+R AV +PV VK+R GW E +A +Q AGA LV H R Sbjct: 166 DPERAVRMVDAVRRAV--SVPVFVKMRTGWSPDPEPAVNLARRLQDAGADALVFHPRVAP 223 Query: 174 QGYRAEHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIP 231 R IG ++ ++IPVI NG+++D + +GCD V +GR A+ P Sbjct: 224 D-RRTHRPRTAHIGLVKDAVDIPVIGNGDVFDAADCAAMLERTGCDGVSLGRLAIARP 280 >UniRef50_C5CI99 Dihydrouridine synthase DuS n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CI99_KOSOT Length = 314 Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 74/232 (31%), Positives = 113/232 (48%), Gaps = 19/232 (8%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 V LAPM G D +R + E D +E + V L + +I PE Sbjct: 6 VGLAPMAGYTDEAMRAISLEWGA-DFVFSEMLSVEGVLRNDRTTQKIIPE---------- 54 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 T R+QL G LA A ++ +W D+N GCP K V G GA LL++PE + Sbjct: 55 TPCRIQLFGNDIARLAMAAKAVLDKATW-FDINAGCPVKKVVKRGAGAALLREPEKLNAM 113 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHID 182 + ++ + LPVSVK+RLGWD E +I + + ++ ++VHGRT QGY D Sbjct: 114 IQTLKGI--SDLPVSVKIRLGWDKNE-VVKIVERLVESRPFAIMVHGRTVVQGYSGVA-D 169 Query: 183 WQAIGDIRQRLN---IPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIP 231 W++IG + + I V +G+++ + + G D V++ RGA+ P Sbjct: 170 WESIGKVVKICKPHGIKVYGSGDVFSPEKIVEAFEKYGVDGVLVARGAIGNP 221 >UniRef50_Q08111 Probable tRNA-dihydrouridine synthase n=17 Tax=Alphaproteobacteria RepID=DUS_RHOCA Length = 324 Score = 101 bits (251), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 83/230 (36%), Positives = 128/230 (55%), Gaps = 10/230 (4%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 VLLAPM G+ D R ++ L ++E V ++L K R + + + P+ Sbjct: 14 VLLAPMAGITDLPFRRMVARFG-AGLVVSEMV-ASGEMLTAKPSVRAKAQAELTAGLPTS 71 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 VQL G+ +AE A ++G+ +D+N GCP+K V G GA L+++P+ + Sbjct: 72 ----VQLAGREAAPMAEAAKIVADMGAEIIDINMGCPAKKVTGGLSGAALMRNPDHALRL 127 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 +A+ AV LPV++K+RLGWD + EIA + AG +V+HGRT+ Q Y Sbjct: 128 IEAVVGAV--DLPVTLKMRLGWDEDQLNAAEIAARAEAAGVKMIVIHGRTRMQFYTGAA- 184 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIP 231 DW+AI +R +++PV+ANG+I D SA++ + SG VM+GRGA P Sbjct: 185 DWRAIAAVRAAVSVPVVANGDITDAASARRALDQSGAAGVMVGRGAQGAP 234 >UniRef50_D1VTQ2 Probable tRNA-dihydrouridine synthase n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VTQ2_9FIRM Length = 310 Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 76/319 (23%), Positives = 148/319 (46%), Gaps = 28/319 (8%) Query: 1 MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRIC----PELQNA 56 ++ +APM G D R+L+ E N D +TE V +C L+ Sbjct: 2 IKFFMAPMAGYTDRAFRQLIYE-NGLDHAVTEMVSA----------RALCFNDRKTLELL 50 Query: 57 SRTPSGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDP 116 + P VQ+ + +++ + + +D+N GCP+ + +G G+ L+K+P Sbjct: 51 KKFPGEKNTGVQIFASDVESISKASYLLNDFDFSYIDINMGCPAPKIVKNGCGSALIKNP 110 Query: 117 ELIYQGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGY 176 L+Y+ K + ++ +S+K R +D+ +I A Q AGA + VH R++E+ Y Sbjct: 111 NLVYELVKGAVK--NSNKKISIKTRKSFDN-TLSLDIIRAAQDAGAFAVTVHPRSREEYY 167 Query: 177 RAEHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRV 236 + + DWQ + I++ L IP+I NG+I + A + D + IGRGA+ P + Sbjct: 168 KNKS-DWQYLIKIKKFLTIPLIGNGDILTVEDALYKIKKYDVDGIAIGRGAIENPLIFSQ 226 Query: 237 V-------KYNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATE 289 + KY E + + + + +L ++ LE + +++ +Y K + E Sbjct: 227 IKKALKGEKYEE--LNFNQRIDILLRHLYLEVNYKGQRQAILNMRKTYAYYLKNLKNSKE 284 Query: 290 LFQHVRVLNNSPDIARAIQ 308 + + V N+ ++ + ++ Sbjct: 285 IRNKLNVENDYTNVVKILE 303 >UniRef50_C0QKE4 Dhs2 n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QKE4_DESAH Length = 330 Score = 100 bits (250), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 66/188 (35%), Positives = 97/188 (51%), Gaps = 14/188 (7%) Query: 65 VRVQLLGQFPQWLAENAARAVELGSWG--VDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 V VQ+ G +A NAAR + + +D+N GC K V +G G L+KD + Sbjct: 67 VSVQIFGAEALSMA-NAARWIAERNVADIIDINFGCSVKKVARTGAGVALMKDMDNARAI 125 Query: 123 AKAMREAVPAHLPVSVKVRLGWDS-GEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 +A+R AV +P ++K+R GWDS + F+IA + G + +H RT QG+R Sbjct: 126 IRAVRRAV--SMPFTIKIRSGWDSSASQAFDIARMAEDNGVDAIAIHPRTAAQGFRG-RA 182 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIP-------NLS 234 DW I +++ L IPVI NG+I + + +GCD VM+GR A+ P L Sbjct: 183 DWSMIARLKEMLTIPVIGNGDITTPEQGVAMIQETGCDGVMVGRAAMGNPFIFGGIEALL 242 Query: 235 RVVKYNEP 242 R +NEP Sbjct: 243 RGEAWNEP 250 >UniRef50_A7I0T0 NifR3 family protein n=9 Tax=Epsilonproteobacteria RepID=A7I0T0_CAMHC Length = 310 Score = 100 bits (250), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 75/236 (31%), Positives = 124/236 (52%), Gaps = 24/236 (10%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPE--LQNASRTP 60 + LAP+ G D +R ++ D ++E + + L+ C E L+ ++ Sbjct: 9 LFLAPLAGFSDLPLRSVVKRFG-CDATVSEMISA-NALV-------FCSEKSLKMIKKSE 59 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVEL-----GSWGVDLNCGCPSKTVNGSGGGATLLKD 115 + T VQ+ G P+ + + AVE+ G G+DLNCGCP V G+ LL++ Sbjct: 60 NETPYFVQIAGSDPKIIKQ----AVEILNKIDGIDGIDLNCGCPVPKVVRQNAGSALLQN 115 Query: 116 PELIYQGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQG 175 +L+ + + +++ S KVRLG+D+ + IA AVQ AGA + +H RT+ G Sbjct: 116 LDLLSKLIEIIKKTSNKKY-TSAKVRLGFDT-KNPVNIALAVQNAGADFIAMHARTRAGG 173 Query: 176 YRAEHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIP 231 Y A+ D++AI + + IP+IANG I + Q+A Q + ++ DA+MIGR + P Sbjct: 174 YSAKP-DYEAIAAAKSAVKIPLIANGNI-NSQNANQILNLTKADALMIGRATIGNP 227 >UniRef50_UPI00015B403F PREDICTED: similar to MGC79829 protein n=1 Tax=Nasonia vitripennis RepID=UPI00015B403F Length = 346 Score = 100 bits (250), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 58/166 (34%), Positives = 89/166 (53%), Gaps = 6/166 (3%) Query: 69 LLGQFPQWLAENAARAVEL---GSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKA 125 L+ QF ++ A E+ S GVDLNCGCP + G GA LL P+L+ + Sbjct: 71 LIVQFAAKEVDDFVEATEMVAPYSNGVDLNCGCPQRWALKDGYGADLLTKPQLVKELVSN 130 Query: 126 MREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHIDWQA 185 +R +P VSVK+R+ D +K E + A++ AG + L VH RT + R E ID + Sbjct: 131 VRNRIPKPFTVSVKIRILKDI-KKTIEFSRAIEHAGVSFLTVHARTPDM--RNEPIDLDS 187 Query: 186 IGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIP 231 + +R +++P+IANG + ++ A+ S C+ VM+ G L P Sbjct: 188 LKLVRSCVHLPMIANGNVRSFEDAKTLYEESKCNGVMVAGGILTNP 233 >UniRef50_B6W908 Putative uncharacterized protein n=1 Tax=Anaerococcus hydrogenalis DSM 7454 RepID=B6W908_9FIRM Length = 321 Score = 100 bits (250), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 78/299 (26%), Positives = 144/299 (48%), Gaps = 22/299 (7%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 +++LAP+ GV D R L++E D TE V V K + + +N Sbjct: 9 QIMLAPLAGVSDVGFR-LISERYGADKTFTEMVSVNALYYDNKKTNDLLFISENEKN--- 64 Query: 62 GTLVRVQLLGQFPQWLAENAARAVEL--GSWGVDLNCGCPSKTVNGSGGGATLLKDPELI 119 +QL G P+ + + + S + N GCP + +G G+ L+ +P+L+ Sbjct: 65 ---CNIQLFGSKPEVIEKVIKDKINYIEKSKEISFNMGCPVAKITKNGEGSQLMANPKLV 121 Query: 120 YQGAKAMREAVPAHLPVSVKVRLGWDSGEKKF-EIADAVQQAGATELVVHGRTKEQGYRA 178 + K +R++ L ++K RLG D + +I Q G +++H RTK+Q Y Sbjct: 122 EEICKTLRKSTDKKL--NIKFRLGIDDKHINYLDIGKIAQDTGIDYVILHARTKDQMYSG 179 Query: 179 EHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVV- 237 + +W I +++ L IPVIANG+I+ + + ++ D VM+ RGA+ P L + + Sbjct: 180 -NANWDHIRKLKENLQIPVIANGDIFSVEDFINVIDLTKADGVMLARGAMGNPFLFKEIK 238 Query: 238 ------KYNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATEL 290 KY++P P + L+ +Y +LE + V ++++ LS+ K + ++++ Sbjct: 239 DYIKTGKYSKPS-PIEIIDQLIDQY-KLELKYKEEKLVVTQMRKHLSWYIKGLENSSKI 295 >UniRef50_A5EVV4 Dihydrouridine synthase n=2 Tax=Cardiobacteriaceae RepID=A5EVV4_DICNV Length = 318 Score = 100 bits (250), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 75/231 (32%), Positives = 110/231 (47%), Gaps = 12/231 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 VLLAPM G+ D R L + I E V Q L + ++ + + +R P Sbjct: 14 VLLAPMAGISDLPYRSLCQRFGSH-YTIAEMVDARPQFLAMPE-SQLRLQFDDDARFPK- 70 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKD-PELIYQ 121 VQL+G P +AE A LG +D+N GCP+K V G+ LL D P++ Sbjct: 71 ---IVQLVGGDPYLMAETAQVMQALGCDVIDINMGCPAKKVGKQNAGSALLSDLPQVEKI 127 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKKFE-IADAVQQAGATELVVHGRTKEQGYRAEH 180 A+ R +PV++K RLG++ E +A + G L VHGRT+ Q + Sbjct: 128 LAQVTRV---VSIPVTLKTRLGFNEQTMTIETVAKIAENTGVAALTVHGRTRAQRFNGT- 183 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIP 231 + IG ++ + ++P+I NG+I AQ + G D VMIGR A P Sbjct: 184 AHYDEIGRVKAQTSLPIIVNGDITTTAQAQDLIQQFGFDGVMIGRAACGNP 234 >UniRef50_C2KYD0 Dihydrouridine synthase n=4 Tax=Bacteria RepID=C2KYD0_9FIRM Length = 344 Score = 100 bits (248), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 78/243 (32%), Positives = 113/243 (46%), Gaps = 30/243 (12%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRV---------VDQLLPVKVFHRICPEL 53 +L+APM GV D R L E+ L TE V D LL H+ P Sbjct: 41 ILMAPMAGVTDLPYRILCKEMG-LSLSFTEMVSAKAIYYGNQNTDSLL----VHKGEP-- 93 Query: 54 QNASRTPSGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLL 113 LV QL G P +AE A R +E G+D+N GCP V + G+ L+ Sbjct: 94 ---------GLVSAQLFGSDPALMAEMACR-IEEDFDGIDVNMGCPVPKVVRNQEGSALM 143 Query: 114 KDPELIYQGAKAMREAVPAHLPVSVKVRLGW-DSGEKKFEIADAVQQAGATELVVHGRTK 172 + L Q M +A+ P++VK R+G+ D E A + +G + +HGRT+ Sbjct: 144 TNLPLAEQVLSTMAKALKK--PLTVKFRIGFTDDAINVVEFAKMAEASGVASVTIHGRTR 201 Query: 173 EQGYRAEHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPN 232 EQ YR + +WQ I + ++ + IPV NG+I+ + A + +G D V + RG P Sbjct: 202 EQYYRGK-ANWQYIKEAKEAVKIPVFGNGDIFQEEDALAMLLSTGVDGVALARGIQGNPF 260 Query: 233 LSR 235 L R Sbjct: 261 LIR 263 >UniRef50_O67533 Probable tRNA-dihydrouridine synthase n=1 Tax=Aquifex aeolicus RepID=DUS_AQUAE Length = 316 Score = 100 bits (248), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 68/234 (29%), Positives = 119/234 (50%), Gaps = 18/234 (7%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQL---LPVKVFHRICPELQNASRT 59 V+LAPM S R L + D TE + V L +P+K+ A T Sbjct: 8 VILAPMASYTHSAFRRLCRRLGA-DRTYTELISAVGVLRNGIPMKL----------AYFT 56 Query: 60 PSGTLVRVQLLGQFPQWLAE-NAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPEL 118 + +Q+ G P+ +A+ + A EL +D+N GC V + +L+ P L Sbjct: 57 EEERPIHIQVFGSNPEEIAQASVVIAKELKPDFIDINFGCSVPKVLRNKAAGYMLQCPPL 116 Query: 119 IYQGAKAMREAV-PAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYR 177 + + K EA+ P +PVS K+RLG++ E + I + +Q+AG + + +H RT +QG+ Sbjct: 117 MGEVVKETVEALKPYGIPVSAKIRLGFEKDEVE-RIVEELQKAGVSLIAIHARTAKQGFS 175 Query: 178 AEHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIP 231 + + W I + ++ ++P+I +G++ W+ ++ + CD VM+GR AL+ P Sbjct: 176 GKAL-WHRIKEAKKVASVPIIGSGDVKSWRDIERMFEETECDGVMVGRAALSNP 228 >UniRef50_B8DSX5 Possible NifR3-like protein n=15 Tax=Bifidobacterium RepID=B8DSX5_BIFA0 Length = 417 Score = 100 bits (248), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 79/236 (33%), Positives = 114/236 (48%), Gaps = 18/236 (7%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFV--RVVDQLLPVKVFHRICPELQNASRTP 60 V+L+PM GV + R L E L + E V R + + P + R+C P Sbjct: 52 VMLSPMAGVTNWPFRVLCEEYGPDGLYVAEMVTARALVERNPKAL--RLC------RFAP 103 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWG-VDLNCGCPSKTVNGSGGGATLLKDPEL- 118 S + +QL G P + + A V+ G +DLN GCP V GGG+ L +L Sbjct: 104 SERIRSLQLYGVNPSIMEQAARFLVDNGMMDHLDLNFGCPVPKVTRRGGGSALPWKTDLF 163 Query: 119 --IYQGAKAMREAVPAHLPVSVKVRLGWDSGEKKF-EIADAVQQAGATELVVHGRTKEQG 175 I Q A+ E PA++PV+ K+R+G D + F E Q+ G + + +H RT + Sbjct: 164 TEIVQRVVAVCE--PANIPVTAKIRVGLDHEHETFLEAGRIAQEEGCSAVTLHARTTAE- 220 Query: 176 YRAEHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIP 231 Y H DW IG++ L+IPV NG+IW + A + +GC V IGRG P Sbjct: 221 YYGGHSDWCRIGELVSTLDIPVFGNGDIWGAEDAIAMVNETGCAGVAIGRGCQGRP 276 >UniRef50_B8DIS9 Dihydrouridine synthase DuS n=2 Tax=Desulfovibrionales RepID=B8DIS9_DESVM Length = 383 Score = 100 bits (248), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 80/238 (33%), Positives = 117/238 (49%), Gaps = 23/238 (9%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVD-QLLPVKVFHRICPELQNASRTP 60 R+ LAPM G+ + RE+ V DY C F + + + +P + PE A Sbjct: 48 RLWLAPMAGLGHAAFREV---VEDYGGCGLLFTGMCNARAVPTER-----PEKSEAFSWR 99 Query: 61 SGTLVRV--QLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPEL 118 +G R+ QL G P+ +AE A R G +GVDLN GC + G GA LL+DPE Sbjct: 100 AGEPPRLVCQLFGAEPEHMAEGARRVQAEGFFGVDLNMGCSVSAIIKRGCGADLLRDPER 159 Query: 119 IYQGAKAMREAVPAHLPVSVKVRLGWDSG-EKKFEIADAVQQAGATELVVHGRT----KE 173 + A+R AV +PV VK R GW + ++A + AGA LV H R + Sbjct: 160 AVRMVAAVRRAV--DIPVFVKFRTGWSPDPQPAVDLARRFEDAGADCLVFHPRVAPDRRT 217 Query: 174 QGYRAEHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIP 231 Q R H IG ++ ++IPV+ NG+++ + + +GCD V +GR A+ P Sbjct: 218 QPPRRAH-----IGLVKAAVSIPVMGNGDVFTPEDCANLLDDTGCDGVSLGRIAVARP 270 >UniRef50_A9BIR6 Dihydrouridine synthase DuS n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BIR6_PETMO Length = 301 Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 69/236 (29%), Positives = 115/236 (48%), Gaps = 13/236 (5%) Query: 5 LAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGTL 64 LAPM D RE+ TE + V + + ++ P+ + Sbjct: 8 LAPMADYTDYPFREICRRFGA-KFTFTEMISVDSIIRENEKVEKMLPQKGEDN------- 59 Query: 65 VRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAK 124 + VQL G E A L SW +D+N CP V G GA LLK+P+L+ Sbjct: 60 IGVQLFGNETTKFIEAAKSIQHLASW-IDINAACPVNKVVKKGSGAALLKNPKLLGDIVF 118 Query: 125 AMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHIDWQ 184 +++++ LPV VKVRLG+D + E+A+ V++AGA ++VHGRT+ Q Y + + Sbjct: 119 NLKKSI--DLPVGVKVRLGYDQINIE-EVAETVEKAGADYIIVHGRTRSQMYSG-IANRE 174 Query: 185 AIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 + ++ ++ IP+ A+G+++ + + G D V++ RGA+ P + YN Sbjct: 175 ILKKLKAKITIPLGASGDVFSKKDIDDYLLNYGADFVLVARGAIGNPWIFTKNNYN 230 >UniRef50_C8W6Y9 TIM-barrel protein, nifR3 family n=1 Tax=Atopobium parvulum DSM 20469 RepID=C8W6Y9_ATOPD Length = 363 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 89/287 (31%), Positives = 133/287 (46%), Gaps = 19/287 (6%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVD-QLLPVKVFHRICPELQNASRTPS 61 VL+APM GV D + R + L +E V V K + + P S P Sbjct: 39 VLMAPMAGVSDGVYRTM-ARAGGAGLAYSEMVSVAGIHFGGEKTWELVEP----LSTEPD 93 Query: 62 GTLVRVQLLGQFPQWLAENAARAVE-LGS--WGVDLNCGCPSKTVNGSGGGATLLKDPEL 118 + VQL G P+ E AA+ E LG+ +D+N CP V G G+ LL PEL Sbjct: 94 ---IAVQLFGSKPEQFKEAAAQISERLGNKLALIDINMACPVPKVVKKGEGSALLDTPEL 150 Query: 119 IYQGAKAMREAVPAHLPVSVKVRLGWDSGEKKF-EIADAVQQAGATELVVHGRTKEQGYR 177 KA V +PV+VK+R G E+ E A A++ AGA+ + VHGR Q YR Sbjct: 151 AANLVKACLSEVT--VPVTVKIRRGRRQDEEVAPEFARAMEAAGASAIAVHGRFATQMYR 208 Query: 178 AEHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVV 237 + +W+ + + ++IPVI +G++ + + +G AVMI RG P + + Sbjct: 209 GQ-AEWETVNRVCDAVSIPVIGSGDMLSAEDVAHALKETGVTAVMIARGTYGNPWIFKNT 267 Query: 238 K-YNEPRMPW-PEVVALLQKYTRLEKQGDTGLYHVARIKQWLS-YLR 281 + E + P+ P V +L + K D H+AR + + Y R Sbjct: 268 QALLEGKTPFVPSVDQMLASFMMHVKLLDAAHIHIARARSLSTWYFR 314 >UniRef50_A9A4W7 Putative TIM-barrel protein, nifR3 family n=1 Tax=Nitrosopumilus maritimus SCM1 RepID=A9A4W7_NITMS Length = 320 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 74/235 (31%), Positives = 110/235 (46%), Gaps = 8/235 (3%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQN-ASRTP 60 R LAPM GV D +R L + L +TEF + + + +Q + Sbjct: 8 RAFLAPMAGVSDPALR-LQCKKMGAGLVVTEFTSIHSIIAKEEQLKENMKTIQEFIEFSE 66 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 + VQL G + E AA VE +D N GCP+ + G LL++ L Sbjct: 67 QERPISVQLFGS-DLYALEKAATIVEPYFDIIDYNMGCPAPHITQQMAGGALLQEVNLTQ 125 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKF--EIADAVQQAGATELVVHGRTKEQGYRA 178 Q + + AV PV++K+R G K +IA+ + G + H RT QGY Sbjct: 126 QIFETLVNAVKK--PVTLKIRSGVTDASKFLFRDIAEIAEDQGIQMITFHPRTVSQGYSG 183 Query: 179 EHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNL 233 DW+ I ++++ NIPV+ NG+I + A+ + +GCD VMIGRGA+ P L Sbjct: 184 SA-DWKLIKELKEISNIPVVGNGDITTPEDAKMMLDETGCDYVMIGRGAMGNPFL 237 >UniRef50_C5WE57 tRNA-dihydrouridine synthase n=42 Tax=Streptococcus RepID=C5WE57_STRDG Length = 354 Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 76/236 (32%), Positives = 115/236 (48%), Gaps = 16/236 (6%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLP-VKVFHRICPELQNASRTP 60 R +LAPM GV +S R + E L + E + L K H + + + P Sbjct: 47 RTVLAPMAGVTNSAFRTIAKEFG-AGLVVMEMISEKGLLYNNEKTLHMLHID---ENEHP 102 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWG--VDLNCGCPSKTVNGSGGGATLLKDPEL 118 + +QL G + L + AA ++ + VD+N GCP V + GA L+DP+ Sbjct: 103 ----MSIQLFGGDAEGL-KRAADFIQTNTKADIVDINMGCPVNKVVKNEAGAKWLRDPDK 157 Query: 119 IYQGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRA 178 IY K + + +P++VK+R GW E A A + AG + L +HGRT+EQ Y Sbjct: 158 IYHIVKEVTSVL--DIPLTVKMRTGWADSSLAVENALAAESAGVSALAMHGRTREQMYTG 215 Query: 179 EHIDWQAIGDIRQRLN-IPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNL 233 D + + + + + IP I NG++ Q A+ + G DAVMIGR A+N P L Sbjct: 216 T-CDHETLARVSKAITKIPFIGNGDVRSVQDAKFMIEEIGVDAVMIGRAAMNNPYL 270 >UniRef50_O95620 tRNA-dihydrouridine synthase 4-like n=40 Tax=Metazoa RepID=DUS4L_HUMAN Length = 317 Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 72/231 (31%), Positives = 114/231 (49%), Gaps = 12/231 (5%) Query: 4 LLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGT 63 + APM R L+ + + DLC T + D + +K R N P Sbjct: 30 VCAPMVRYSKLAFRTLVRKYS-CDLCYTPMIVAADFVKSIKA--RDSEFTTNQGDCP--- 83 Query: 64 LVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGA 123 + VQ + L++ AAR V + G+D+NCGCP + G GA L+ PEL+ Sbjct: 84 -LIVQFAANDARLLSD-AARIVCPYANGIDINCGCPQRWAMAEGYGACLINKPELVQDMV 141 Query: 124 KAMREAVPA-HLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHID 182 K +R V VS+K+R+ D ++ ++ + G + + VHGRT E+ ++ H D Sbjct: 142 KQVRNQVETPGFSVSIKIRIH-DDLKRTVDLCQKAEATGVSWITVHGRTAEERHQPVHYD 200 Query: 183 WQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNL 233 +I I++ ++IPVIANG+I + A+ I+G D VM+ RG L P + Sbjct: 201 --SIKIIKENMSIPVIANGDIRSLKEAENVWRITGTDGVMVARGLLANPAM 249 >UniRef50_UPI000179183B PREDICTED: similar to tRNA-dihydrouridine synthase 4-like (PP35) n=1 Tax=Acyrthosiphon pisum RepID=UPI000179183B Length = 350 Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 54/154 (35%), Positives = 84/154 (54%), Gaps = 3/154 (1%) Query: 80 NAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVSVK 139 NA+ + GVDLNCGCP + G GA LLK+PE+I + +R +P + +SVK Sbjct: 88 NASNLIIPYCDGVDLNCGCPQRWALNEGYGAQLLKNPEIIKDCVRQLRNHLPTNKTISVK 147 Query: 140 VRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHIDWQAIGDIRQRLNIPVIA 199 +RL D + ++ ++ G + + VHGRT Q + E ID + + I + +++PVI Sbjct: 148 LRL-LDDHRQSVDLCQQIEATGVSFITVHGRTALQ--KNEPIDQECLKLINESVSVPVIL 204 Query: 200 NGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNL 233 NG+I + A +GC +M RG L+ P L Sbjct: 205 NGDIKNLSDAITMQEYTGCRGMMSARGILHNPGL 238 >UniRef50_D2RA64 TIM-barrel protein, nifR3 family n=5 Tax=Actinobacteridae RepID=D2RA64_GARVA Length = 384 Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 73/233 (31%), Positives = 108/233 (46%), Gaps = 12/233 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 V+L+PM G+ + R + E L + E + + R+C PS Sbjct: 19 VVLSPMAGITNWPFRVICREFGPDGLYVAEMITARALVARNPKALRLC------RFAPSE 72 Query: 63 TLVRVQLLGQFPQWLAENAARAV--ELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 + +QL G P + E A R V E + VDLN GCP V GGG+ L +L+ Sbjct: 73 KVRSLQLYGVNPS-IVEQATRIVVDENMADHVDLNFGCPVPKVTRRGGGSALPWKTDLLQ 131 Query: 121 Q-GAKAMREAVPAHLPVSVKVRLGWDSGEKKF-EIADAVQQAGATELVVHGRTKEQGYRA 178 + + + PA +PV+ K R+G D + F + Q+ G + +H RT + Y Sbjct: 132 EILHRVVSVCEPAGIPVTAKFRVGIDENHETFIQAGHIAQEEGCAAVTLHARTTAE-YYG 190 Query: 179 EHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIP 231 H DWQ IG++ + L+IPV NG+IW + A +GC V IGRG P Sbjct: 191 GHSDWQRIGELVETLDIPVFGNGDIWGAEDALAMFKETGCAGVAIGRGCQGRP 243 >UniRef50_B1ZWU6 TIM-barrel protein, nifR3 family n=6 Tax=Verrucomicrobia RepID=B1ZWU6_OPITP Length = 370 Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 69/235 (29%), Positives = 113/235 (48%), Gaps = 11/235 (4%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 + L+P+ G + R L E+ T+ V L R L+ + + Sbjct: 12 LFLSPLAGYTNLPFRLTLRELGGLGWVTTDLVNARSLL------ERNPAALKLVASSAED 65 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 + +QL G P + + A +LG+ VD+N GCP + V GGG+ ++ + Sbjct: 66 RPMSIQLFGSVPTEMRDAARICEDLGAQAVDINMGCPVRKVVRVGGGSAMMTELNQTAAL 125 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 + M EAV +PV+ K+RLGWD ++A ++ AG + VHGRT+ QG+ + Sbjct: 126 VRGMIEAV--KIPVTAKMRLGWDDENLTAPDLARVLEDAGVAAVFVHGRTRAQGFSGT-V 182 Query: 182 DWQAIGDIRQRLN-IPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSR 235 + I + Q + IPVI NG++ ++A+ + +GC V IGRGA P + R Sbjct: 183 NLAGIAAVVQAVKRIPVIGNGDVTTPEAARAMIEQTGCAGVSIGRGAFYDPWIFR 237 >UniRef50_B9M3C8 Dihydrouridine synthase DuS n=2 Tax=Desulfuromonadales RepID=B9M3C8_GEOSF Length = 306 Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 76/255 (29%), Positives = 124/255 (48%), Gaps = 9/255 (3%) Query: 4 LLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICP-ELQNASRTPSG 62 +LAPM+GV + +R L E+ D TEF+RV + PV+ RI +L+ + Sbjct: 1 MLAPMQGVTNRAMRSLFIELVRPDTVFTEFIRV-NAAAPVR---RISAGDLKEMAAAEKD 56 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 + VQL+G L A A G+ ++LN GCP + G LL+ PE++ + Sbjct: 57 VPLVVQLIGHGRDALVSAAEAAQATGAIHINLNMGCPYGRMTSGPTGGGLLRHPEVLSEI 116 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHID 182 ++R + S+K+R G+D E+ + + A LV+H RT Q Y+ D Sbjct: 117 IPSLRRVIKGTF--SLKMRAGYDDPEQILRLLPLFEAAKVDFLVLHPRTVLQQYQG-LAD 173 Query: 183 WQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNEP 242 + + IPVIANG+I + Q + +G +M+GRGA+ P + + ++ + P Sbjct: 174 HAITARVVRETEIPVIANGDIRTASAGLQLLEETGAAGLMLGRGAIADPFIFQRLRQSAP 233 Query: 243 RMP-WPEVVALLQKY 256 P + A+LQ Y Sbjct: 234 SEPDQHDRSAMLQSY 248 >UniRef50_D1NSS9 Putative tRNA-dihydrouridine synthase n=1 Tax=Bifidobacterium gallicum DSM 20093 RepID=D1NSS9_9BIFI Length = 422 Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 75/241 (31%), Positives = 113/241 (46%), Gaps = 12/241 (4%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 V+L+PM GV + R L + L + E + + R+C PS Sbjct: 57 VILSPMAGVTNWPFRVLCEQYGPDGLYVAEMITARALVARNPKALRLC------RFAPSE 110 Query: 63 TLVRVQLLGQFPQWLAENAARAV--ELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 + +QL G P + E AA+ V E + VDLN GCP V GGG+ L +L Sbjct: 111 RIRSLQLYGVNPS-IMEQAAKIVVDEQMADHVDLNFGCPVPKVTRRGGGSALPWKTDLFT 169 Query: 121 QG-AKAMREAVPAHLPVSVKVRLGWDSGEKKF-EIADAVQQAGATELVVHGRTKEQGYRA 178 ++ +R A +PV+ K+R+G D + F E Q+ G + +H RT + Y Sbjct: 170 DVVSRVVRVCDAAGIPVTAKIRVGIDHEHETFHEAGHIAQEEGCKAVTLHARTTAE-YYG 228 Query: 179 EHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK 238 H DW IG++ ++L++PV NG+IW A + +GC V IGRG P L +K Sbjct: 229 GHSDWSRIGELVEQLDVPVFGNGDIWGAADALAMVEQTGCAGVAIGRGCQGRPWLFADIK 288 Query: 239 Y 239 + Sbjct: 289 H 289 >UniRef50_B0S217 Nitrogen regulation protein n=3 Tax=Clostridiales Family XI. Incertae Sedis RepID=B0S217_FINM2 Length = 305 Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 71/260 (27%), Positives = 122/260 (46%), Gaps = 16/260 (6%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 + LAP+ GV D R L E+ LC TE + K ++ L R S Sbjct: 7 LFLAPLAGVTDIPFRILCGELG-AGLCFTEMISAKGLYYDDKKTKKL---LDTDPREKST 62 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSW-GVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + VQ+ G P+ +A E ++ +D+N GCP+ + +G G+ L+ D L Sbjct: 63 S---VQIFGHEPEIIAYATRFLTENYNFKSIDINMGCPAPKIFKNGDGSALMGDLNLAED 119 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKKF-EIADAVQQAGATELVVHGRTKEQGYRAEH 180 +A + LPVSVK RLG D + ++A ++ + +H RT++ Y E Sbjct: 120 VIRACKNNTD--LPVSVKFRLGIDENSMNYMQLAQICERLKVDYITLHARTRKMFYSGE- 176 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 DW I + + ++IPV NG+ + + ++ M S CD V++ RGA+ P + + Sbjct: 177 ADWLHIKRVVENVDIPVFGNGDCFTKEDIRKNMEYSNCDGVLLARGAMQNP----FIFSD 232 Query: 241 EPRMPWPEVVALLQKYTRLE 260 + EV+ ++K+ +L+ Sbjct: 233 DENKSKEEVIDTIKKHMQLK 252 >UniRef50_C0W327 Dihydrouridine synthase n=2 Tax=Actinomyces RepID=C0W327_9ACTO Length = 438 Score = 97.4 bits (241), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 89/299 (29%), Positives = 130/299 (43%), Gaps = 49/299 (16%) Query: 3 VLLAPMEGVLDSLVRELLTE-------------------VNDYDLCITEFVRVVDQLLPV 43 V LAPM GV ++ R L E +D L + V + + Sbjct: 38 VELAPMAGVTNASFRRLCREQGESALPAHARPAAAGPLPTDDGGLLAPAGLYVTEMVTTR 97 Query: 44 KVFHRICPELQNASRTPSGTLVRVQLLGQFPQWLAENAARAV--ELGSWGVDLNCGCPSK 101 + R L P+ + +QL G P +A AAR + E + +DLN GCP Sbjct: 98 ALVERNDKTLAMVRTDPTERVRSIQLYGVDP-VIAGKAARILVEEDLADHIDLNFGCPVP 156 Query: 102 TVNGSGGGATLLKDPELIYQGAKAMREAVPA------------HLPVSVKVRLGWDSGEK 149 V GGGA L +L++ +RE V +PV+VK+R+G D + Sbjct: 157 KVTRKGGGAALPWKKDLLH---AILREVVRGAEEGVRLGRREREVPVTVKMRIGVDEEHE 213 Query: 150 KF-EIADAVQQAGATELVVHGRTKEQGYRAEHIDWQAIGDIRQRLNIPVIANGEIWDWQS 208 + + A A Q AG L +HGRT Q Y A DW AI +++ IPV+ NG+ W Sbjct: 214 TYLDAARAAQDAGVAALALHGRTARQHY-AGKADWSAIARLKEACRIPVLGNGDTWTGSH 272 Query: 209 AQQCMAISGCDAVMIGRGALNIP--------NLSRVVKYNEPRMPWPEVVALLQKYTRL 259 A + M +GCD V++GRG P LS V+ P + V+A ++ + RL Sbjct: 273 ALEMMRQTGCDGVVVGRGCQGRPWLFADIVHALSGSVERTHPDL--DAVIATIRAHARL 329 >UniRef50_D1N5U0 Dihydrouridine synthase DuS n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N5U0_9BACT Length = 288 Score = 97.4 bits (241), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 61/175 (34%), Positives = 95/175 (54%), Gaps = 3/175 (1%) Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 SG V VQL+G P+ +A AAR +ELG+ G++LN GCPS+ V G G L+D + Sbjct: 45 SGLPVTVQLMGNRPEVIAAAAARFMELGAAGINLNFGCPSRQVTSGGAGGGALRDLAGMV 104 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGA-TELVVHGRTKEQGYR-A 178 + +++A+PA P+SVK+R GW+S ++ I A+ + G + +H RT + YR Sbjct: 105 TTVETVKKAIPAS-PLSVKLRTGWESPDEMQRILPALAETGCVSAFFLHFRTVREQYRPV 163 Query: 179 EHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNL 233 + + +R +PV+ NG+I A + + +G VM RG L P L Sbjct: 164 SGREERFEAGLRLAAPVPVVLNGDIDSPDDASELLERTGAAGVMCARGWLRDPLL 218 >UniRef50_C1ZDL9 Putative TIM-barrel protein, nifR3 family n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZDL9_PLALI Length = 385 Score = 97.4 bits (241), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 76/264 (28%), Positives = 122/264 (46%), Gaps = 11/264 (4%) Query: 1 MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTP 60 R LL+P+ G + R ++ E+ L T+ V L + R+ + P Sbjct: 48 FRTLLSPLAGFTNLPFRRVVHELGGLGLGTTDLVNARGLLAGSEKTLRLI------ATHP 101 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 VQ+ G + + A G +D+N GCP V +G GA+L+ + Sbjct: 102 IDRPFAVQIFGGEASIMRDAAQLLEARGVDSIDINMGCPVLKVVKTGAGASLMCHADAAT 161 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRAE 179 + KA+ EAV H+PV+VK+RLGWD+ + A +Q G + +HGRT+ QG+ Sbjct: 162 ELVKAVVEAV--HVPVTVKMRLGWDASQLTAPRFAREFEQVGVAAVAIHGRTRAQGFSGT 219 Query: 180 HIDWQAIGDIRQRLN-IPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK 238 ++ I + + ++ IPVIANG+I A +GC A+ IGRGAL P + R + Sbjct: 220 -VNRDGIRQVVEAVDSIPVIANGDIRSVDDAIAMYDETGCQAISIGRGALANPWIFRQLT 278 Query: 239 YNEPRMPWPEVVALLQKYTRLEKQ 262 E W + + + +Q Sbjct: 279 EWETTGDWAPAGSFNDRLLLMRRQ 302 >UniRef50_Q6A959 TIM-barrel enzyme, NifR3 family n=2 Tax=Propionibacterium acnes RepID=Q6A959_PROAC Length = 411 Score = 97.4 bits (241), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 89/295 (30%), Positives = 136/295 (46%), Gaps = 31/295 (10%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRI-----CPELQNAS 57 V+LAPM GV ++ R+L E L + E + + H + C ++++ Sbjct: 52 VVLAPMAGVTNAAFRQLCAE-QGAGLYVCEMITSRGLVYGDHKTHGMLAFAECEDVRS-- 108 Query: 58 RTPSGTLVRVQLLGQFPQWLAENAARAVE-LGSWGVDLNCGCPSKTVNGSGGGATLLKDP 116 VQL G P + E + E G VDLN GCP V GGG L Sbjct: 109 ---------VQLYGVDPGMVGEATSILCEKYGVNHVDLNFGCPVPKVTRKGGGGVLPWKL 159 Query: 117 ELIYQGAKAMREAVPAH-LPVSVKVRLGWDSGEKKF-EIADAVQQAGATELVVHGRTKEQ 174 + A +A AH +PV+VK R+G D + + A A +GA + +H RT + Sbjct: 160 DRFAAVVSAAVQAGDAHGVPVTVKTRIGIDPEHITYIDSARAAVDSGAAAVCLHARTVAE 219 Query: 175 GYRAEHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLS 234 Y A H W AIG++ + +++PVI NG+IW+ A + +GC V +GRG L P L Sbjct: 220 AY-AGHSHWDAIGELVKTVDVPVIGNGDIWEASDAMAMVGQTGCAGVEVGRGCLGRPWLF 278 Query: 235 R-----VVKYNEPRMP-WPEVVALLQKYTRL--EKQGDTGLYHVARIKQWLSYLR 281 R + +P EV A+++++ L + QG GL + + W YL+ Sbjct: 279 RDLADAFAGRDTTTLPTLGEVCAMIRRHAELLVKYQGMHGLVDMRKHMAW--YLK 331 >UniRef50_D0WEP2 tRNA-dihydrouridine synthase B n=2 Tax=Slackia RepID=D0WEP2_9ACTN Length = 318 Score = 97.4 bits (241), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 76/228 (33%), Positives = 110/228 (48%), Gaps = 14/228 (6%) Query: 8 MEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGTLVRV 67 M GV D + R L E DL TE + L R +L R V + Sbjct: 1 MAGVNDIVFRRLCLE-QGCDLTYTEMISS-KALSFANEKTRHLLDLAEGERR-----VAI 53 Query: 68 QLLGQFPQWLAENAA-RAVELGSWG--VDLNCGCPSKTVNGSGGGATLLKDPELIYQGAK 124 QL G P+ +A AA ELG +D+N GCP+ + G G+ L++D +L + Sbjct: 54 QLFGHEPKVMAREAAWVEDELGDALALIDINMGCPAHKIVKKGDGSALMRDQDLAASIVR 113 Query: 125 AMREAVPAHLPVSVKVRLGWDSGEKK-FEIADAVQQAGATELVVHGRTKEQGYRAEHIDW 183 + AV PV+VK R G+ + E+ + ++ AGA + VHGRT Q YR +W Sbjct: 114 DVARAVSC--PVTVKFRRGFGAEEETAVDFGLRMEDAGAAAVTVHGRTAAQMYRGPS-EW 170 Query: 184 QAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIP 231 + + ++ L++PVI NG+I SA + +GCD VMI RGA P Sbjct: 171 ECVARVKAALSVPVIGNGDIVSGASAADMVRATGCDGVMIARGAQGNP 218 >UniRef50_Q6AJZ5 tRNA-dihydrouridine synthase n=1 Tax=Desulfotalea psychrophila RepID=Q6AJZ5_DESPS Length = 328 Score = 97.1 bits (240), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 75/229 (32%), Positives = 111/229 (48%), Gaps = 11/229 (4%) Query: 4 LLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGT 63 +LAP+ G D R LL D ++E + +F+ L+ + P Sbjct: 14 VLAPLAGYTDLSFR-LLCHQFGADYTVSEMISCHG------LFYNQQRTLEMLASLPEER 66 Query: 64 LVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGA 123 V QL G P +A+ + +D+N GCP + V G GA L+ PEL Y Sbjct: 67 PVSFQLFGAEPDIMAKATLILNDFQPDMIDINMGCPVRKVTKKGAGAALMSTPELAYDVI 126 Query: 124 KAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRAEHID 182 +++ + +PV+VK R G S E E ++AGA + VHGRT+ Q + D Sbjct: 127 RSVVDNT--DIPVTVKFRAGVSSTELNGVEFGLMTERAGAAAVAVHGRTRAQAFSGV-AD 183 Query: 183 WQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIP 231 I ++++ L+IPVI NG+I +Q MA +GCD VM+GRGAL P Sbjct: 184 RGIIKEVKEALSIPVIGNGDILSYQDGLDMMAETGCDGVMVGRGALGNP 232 >UniRef50_A8ICF9 Predicted protein (Fragment) n=1 Tax=Chlamydomonas reinhardtii RepID=A8ICF9_CHLRE Length = 198 Score = 97.1 bits (240), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 67/195 (34%), Positives = 97/195 (49%), Gaps = 16/195 (8%) Query: 92 VDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVSVKVRLGWDSGEKKF 151 +D+NCGCP G G+ +L+ P + + + A + LPV+VK+RLG +KK Sbjct: 2 LDINCGCPIYEATRRGMGSAMLRKPRALAKMVAGI--AADSELPVTVKIRLG--ENDKKI 57 Query: 152 ---EIADAVQQAGATELVVHGRTKEQGYRAEHIDWQAIGDIRQRLNIPVIANGEIWDWQS 208 + D + +AGA + VHGRT EQ Y+ + DW +G++ + +P+I NG+I Sbjct: 58 VVDTVVDYLHRAGAAAVTVHGRTAEQRYK-KAADWAKVGEVARSTPVPIIGNGDILTHYE 116 Query: 209 AQQCMAISGCDAVMIGRGALNIPNLSRVVKYNEPRMPWPE----VVALLQKYTRLEKQGD 264 A SGC AVM GRGAL P + + K +P E V LL Y + E GD Sbjct: 117 AHARRTESGCTAVMAGRGALIKPWIFQEYKEGREWLPSTEERVGVYRLLVSYMK-EHFGD 175 Query: 265 TGLYHVARIKQWLSY 279 R K W + Sbjct: 176 D---ERGRRKAWYFF 187 >UniRef50_A0EG06 Chromosome undetermined scaffold_94, whole genome shotgun sequence n=4 Tax=Intramacronucleata RepID=A0EG06_PARTE Length = 360 Score = 97.1 bits (240), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 59/178 (33%), Positives = 91/178 (51%), Gaps = 5/178 (2%) Query: 57 SRTPSGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDP 116 + P + QL G PQ L + AA ++ +D+N GCP GA LL+ Sbjct: 67 TTCPEDRPLFAQLCGHDPQVLIK-AALMIQDQCDAIDINLGCPQGIARKGLYGAYLLEKR 125 Query: 117 ELIYQGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGY 176 E + K +++ + ++PV+ K+R+ D ++ ++ +Q+AG + L VHGRTKEQ Sbjct: 126 EQVLTIVKELKQNI--NVPVTCKIRMFKDR-KRTLDLTKDIQEAGCSILTVHGRTKEQNK 182 Query: 177 R-AEHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNL 233 DW I +I+Q L IPV ANG I+ W ++C+ + DAVM L P L Sbjct: 183 DFVGQCDWTIIAEIKQILQIPVFANGGIYTWSDVERCLQETKVDAVMSSEALLENPAL 240 >UniRef50_A1VHK2 Dihydrouridine synthase, DuS n=10 Tax=Desulfovibrionaceae RepID=A1VHK2_DESVV Length = 449 Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 83/297 (27%), Positives = 134/297 (45%), Gaps = 17/297 (5%) Query: 5 LAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNA-SRTPSGT 63 LAP+ G D R LL +C TE V K P ++ + TP Sbjct: 36 LAPLAGYSDLSFR-LLCRKAGAAVCCTEMVSA-------KGLIYYSPGTRDLLATTPEDA 87 Query: 64 LVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGA 123 + VQL G P + +E G DLN GC V +G GA +L+D A Sbjct: 88 PLVVQLFGCDPDIMVRAMEPLLEQGFRWFDLNMGCSVPKVVKTGCGAAMLRDVPQALAVA 147 Query: 124 KAMREAVPAHLPVSVKVRLGWDSGEKKF-EIADAVQQAGATELVVHGRTKEQGYRAEHID 182 +AM A V K RLGWD G++ + ++ A+ GA + +H R QG+ E Sbjct: 148 RAMLRTAGAGR-VGFKFRLGWDVGQEVWADLGRALADLGAGWVTLHPRYARQGFSGE-AR 205 Query: 183 WQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNL-----SRVV 237 W +G++ + +++PVIA+G+++ +C+ +G +VM RGALN P + RV Sbjct: 206 WSTLGELVRAVSVPVIASGDLFTAADGVRCLRETGVASVMYARGALNDPGVFHAHRERVA 265 Query: 238 KYNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHV 294 +P + AL+ ++ L +Q G + +++ ++ + A L QH+ Sbjct: 266 GRPDPGYTPQRLRALITRHAELARQYAPGRSALLKMRTFVPRYVRHLPGARALRQHL 322 >UniRef50_Q54ES7 tRNA-dihydrouridine synthase 4-like protein n=1 Tax=Dictyostelium discoideum RepID=Q54ES7_DICDI Length = 344 Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 61/184 (33%), Positives = 98/184 (53%), Gaps = 11/184 (5%) Query: 56 ASRTPSGTLVRVQ--LLGQFPQWLAE---NAARAVELGSWGVDLNCGCPSKTVNGSGGGA 110 A+R T+ ++ L+ QF AE +AA V+ G+D+NCGCP + V G GA Sbjct: 97 AARDSDFTINKLDEPLIVQFGVNNAEELVSAAEKVKDYCQGIDINCGCPQRWVMKEGFGA 156 Query: 111 TLLKDPELIYQGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGR 170 LL PE IY K + VP +P+S+K+R+ D + E+A ++ G + + VHGR Sbjct: 157 NLLLHPERIYDMVKQINNRVP--IPISIKIRVQSDLKD-TIELAKRAERIGVSWITVHGR 213 Query: 171 TKEQGYRAEH-IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALN 229 T ++ H +D+ AI ++ + +PV ANG+++ + + +G + VM RG L Sbjct: 214 T--SAMKSSHPVDYDAIKLVKDNVTLPVFANGDVFTLSQSNEIREKTGVNGVMSARGLLT 271 Query: 230 IPNL 233 P L Sbjct: 272 NPAL 275 >UniRef50_Q3MB47 Dihydrouridine synthase, DuS n=6 Tax=Bacteria RepID=Q3MB47_ANAVT Length = 378 Score = 95.9 bits (237), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 81/298 (27%), Positives = 134/298 (44%), Gaps = 16/298 (5%) Query: 5 LAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGTL 64 LAPM+ V + +++ D TE+ RV D +R L + +G Sbjct: 21 LAPMQDVTNLWFMKVIAHYGSPDYFFTEYFRVND----TSRLNRGI--LAAITENDTGRP 74 Query: 65 VRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAK 124 V Q++G+ L A GVDLN GCP+ + G LL P + Q Sbjct: 75 VFAQMIGESIPDLVRTAKELCHYDIAGVDLNMGCPAPRIYRKNVGGGLLLSPGKVEQILA 134 Query: 125 AMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHIDWQ 184 +R+AV + P++VK+R+G+++ + +EI D V + L +HGRT + Y + + Sbjct: 135 ELRQAV-SDRPLTVKMRVGFENTDTFYEILDIVNRHNIDLLSLHGRTVKDMYHGA-VKYD 192 Query: 185 AIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIP---NLSRVVKYNE 241 I + +R++ PV+ANG I +A + + +G VM+GR A+ P N R E Sbjct: 193 LIAEAVKRVDCPVLANGNIHSATTALEVLERTGAAGVMVGRWAIGNPWLFNQIRQALRGE 252 Query: 242 PRMPWPEVVALLQKYTRLEKQGDTGLY----HVARIKQWLSYLRKEYDEATELFQHVR 295 P P P +V + RL + V +K +L+Y+ D + + +R Sbjct: 253 PITPVP-LVEVRNYIDRLWQTPTAATMPERSRVGYLKMFLNYIALSVDAEGQFLRLMR 309 >UniRef50_C1ZGV0 tRNA-dihydrouridine synthase n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZGV0_PLALI Length = 322 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 59/154 (38%), Positives = 86/154 (55%), Gaps = 5/154 (3%) Query: 80 NAARAVE-LGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVSV 138 AAR +E LG VDLN CP + + G G G L+ P+ I + A ++AV +PV+V Sbjct: 81 EAARVIEELGFSMVDLNFECPIRRLVGRGEGGALMGQPQRIAELVAAAKQAV--SIPVTV 138 Query: 139 KVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRAEHIDWQAIGDIRQRLNIPV 197 K+R G +GE E A V+QAG +++H R+ EQ Y DWQ + +++ ++IPV Sbjct: 139 KLRTGPKAGEDTAVETAQRVEQAGGAAIILHARSVEQAYLGGP-DWQHVTRVKEAVSIPV 197 Query: 198 IANGEIWDWQSAQQCMAISGCDAVMIGRGALNIP 231 + +G + Q A + SG D V IGRG L P Sbjct: 198 LGSGGVRTPQDAISFLESSGADGVAIGRGCLGNP 231 >UniRef50_A6DCX2 tRNA-dihydrouridine synthase B n=1 Tax=Caminibacter mediatlanticus TB-2 RepID=A6DCX2_9PROT Length = 311 Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 85/317 (26%), Positives = 143/317 (45%), Gaps = 34/317 (10%) Query: 4 LLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASR-TPSG 62 LAP+ G D R ++ E C F +++ + +Q +S+ TP Sbjct: 14 FLAPLAGYTDLPFRSVVKEFG----CDMTFSEMINANAIAFNNEKTKKMMQKSSKETP-- 67 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGS---W--GVDLNCGCPSKTVNGSGGGATLLKDPE 117 Q ENA +AVE+ + W G+D+N GCP SG G LLKD Sbjct: 68 ------YFIQIAANNVENAIKAVEIINEIPWIDGIDINLGCPVNKARRSGYGGVLLKD-- 119 Query: 118 LIYQGAKAMREAVPAHLP-----VSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTK 172 + + ++E V A + VS K+RLG++ + A ++ G L VHGRT Sbjct: 120 ---ENKEKLKEIVSAIIKTSKKIVSAKMRLGYNE-VVAVDRAKMLEDLGIKFLTVHGRTV 175 Query: 173 EQGYRAEHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPN 232 +Q Y+ + +++ I + + +NIPVIANG+I D++ A++ + + + V IGRG + P Sbjct: 176 KQMYKG-NANYKEIKKVVKEVNIPVIANGDITDYKKAKEVLEYTEANGVAIGRGVIGKPW 234 Query: 233 LSRVVKYNEPRMPWPEVVALLQKY-TRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELF 291 + +K P+ + +L + +E GD Y V ++ L K A+E Sbjct: 235 IFLEMKQQGEITPYQKKEVILTHFKAMIEWYGD---YGVILFRKHLHQYSKGIKNASEFR 291 Query: 292 QHVRVLNNSPDIARAIQ 308 + N ++ I+ Sbjct: 292 SKINSTENKDEVINLIE 308 >UniRef50_C9LMP9 tRNA-dihydrouridine synthase n=1 Tax=Dialister invisus DSM 15470 RepID=C9LMP9_9FIRM Length = 330 Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 72/199 (36%), Positives = 104/199 (52%), Gaps = 10/199 (5%) Query: 65 VRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAK 124 V +QL G P +A A + G+ VD+N GCP + V +G G+ L+K+ L + Sbjct: 70 VSLQLFGSDPAVMALGAKVMEKAGADIVDINMGCPMQKVVKNGDGSALMKNVTLAAEIIS 129 Query: 125 AMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRAEHIDW 183 A+ AV +PV++K+RLGW E+A A + AGA + VHGRT+E Y DW Sbjct: 130 AVTAAV--KIPVTIKMRLGWSRDTINAVELAMAAESAGAAAITVHGRTREDFYMGT-ADW 186 Query: 184 QAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIP-NLSRVVKYNE- 241 + I + + IPVI NG++ D +A+ M +GC AV IGR A P V Y E Sbjct: 187 REIKKVVDAVRIPVIGNGDVGDGPAAKALMEETGCAAVAIGRAAWGNPWVFGAVNTYLET 246 Query: 242 ----PRMPWPEVVALLQKY 256 P W E +A+ +K+ Sbjct: 247 GEILPGPSWEERLAMARKH 265 >UniRef50_Q8SUV4 Putative uncharacterized protein ECU07_1610 n=1 Tax=Encephalitozoon cuniculi RepID=Q8SUV4_ENCCU Length = 341 Score = 94.7 bits (234), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 57/166 (34%), Positives = 91/166 (54%), Gaps = 5/166 (3%) Query: 67 VQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAM 126 VQ+ G P+ + E AA ++ +D+N GCP K G GA L ++ +L + K + Sbjct: 72 VQICGNSPEVMLE-AALIIQDHCDAIDVNFGCPQKVARKGGYGAYLQENWKLTGEIVKVL 130 Query: 127 REAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQ-GYRAEHIDWQA 185 + ++PV K+R+ + S EK E A +++AG + L VHGRT++Q G W+ Sbjct: 131 SSGL--NVPVFCKIRV-FGSIEKTVEYAKMIEEAGCSLLAVHGRTRDQRGAAMGFASWKH 187 Query: 186 IGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIP 231 I I++ L IPV++NG I +C+ +GCD VM+G L+ P Sbjct: 188 IRAIKENLRIPVLSNGNIMTHHDVWRCLEYTGCDGVMVGEAHLHNP 233 >UniRef50_B9K738 TIM-barrel protein, nifR3 family n=1 Tax=Thermotoga neapolitana DSM 4359 RepID=B9K738_THENN Length = 273 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 58/191 (30%), Positives = 99/191 (51%), Gaps = 14/191 (7%) Query: 59 TPSGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPEL 118 +P V VQ+ G P+ L+ A + W +DLN GCP + V G G LL+D +L Sbjct: 20 SPEEKNVAVQIFGSDPEELSRAADVLSDEYPW-IDLNAGCPVRKVVKKGAGGGLLRDLDL 78 Query: 119 IYQGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRA 178 K +R+ V +VK RLGW+ + +I + + + G E+ +H RT Q + Sbjct: 79 FRAVVKELRKHVKGKF--TVKTRLGWNENQIS-KIYEILVEEGVDEVFIHTRTVAQAFTG 135 Query: 179 EHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVV- 237 + DW+++ + ++ IP +G+I+ + A++ + SGC V++ RGA+ P L + + Sbjct: 136 K-ADWKSLSVLDKK--IPTFVSGDIFSPEDAKRALEESGCHGVLVARGAIGRPWLFKQIK 192 Query: 238 ------KYNEP 242 KY+EP Sbjct: 193 DFLERGKYSEP 203 >UniRef50_Q4PG83 Putative uncharacterized protein n=2 Tax=Ustilaginomycotina RepID=Q4PG83_USTMA Length = 527 Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 63/199 (31%), Positives = 97/199 (48%), Gaps = 13/199 (6%) Query: 67 VQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAM 126 VQ P+ L + AA+ VE VDLN GCP G+ L++D LI+ + Sbjct: 137 VQFCSNDPETLLK-AAKVVEDRCDAVDLNLGCPQHIARRGHYGSYLMEDWSLIFSLINIL 195 Query: 127 REAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKE-QGYRAEHIDWQA 185 V +PV+ K+R+ ++S EK A +++AGA + VHGRT+ +G+ DW Sbjct: 196 H--VNLKVPVTAKMRV-YESVEKTITYARLLERAGAQIITVHGRTRNMKGHLTGLADWAK 252 Query: 186 IGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGAL--------NIPNLSRVV 237 I +++ +N+PV ANG + Q +A +G D VM G L N P + Sbjct: 253 IRAVKEAVNVPVFANGNVLYPQDFYDALAATGADGVMSAEGNLYNPAIMLPNPPKQPSAM 312 Query: 238 KYNEPRMPWPEVVALLQKY 256 N P +P P +V + +Y Sbjct: 313 FPNAPELPLPSIVKMAHEY 331 >UniRef50_A2F0D1 Putative uncharacterized protein n=1 Tax=Trichomonas vaginalis RepID=A2F0D1_TRIVA Length = 333 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 66/247 (26%), Positives = 114/247 (46%), Gaps = 29/247 (11%) Query: 75 QWLAENAARAVELGSW------GVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMRE 128 Q L +A++AV+ S +DLNCGCP G G++L+ +PE++ A+R Sbjct: 87 QILTNDASKAVQAASVVVKFADAIDLNCGCPESFATSRGTGSSLMSEPEIVADVVSALRR 146 Query: 129 AVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHIDWQAIGD 188 ++P+SVK R+ + E+ + A A + AGA+ + VHGR KEQ + + + + Sbjct: 147 NY--NVPISVKHRIHHNI-EESIQFAVACENAGASAIAVHGRLKEQKNKGS-VAYDNMKL 202 Query: 189 IRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNEPRMPWPE 248 + L++ I NG + + + A++ M +GC++V+I AL P + P + Sbjct: 203 VFDHLHVAKIGNGGVKNREMAKEMMEKTGCESVIISSAALKNPTIFS-------GHPETD 255 Query: 249 VVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNNSPDIARAIQ 308 V L ++Y + KQ H R W + R + SPD Sbjct: 256 PVKLARRYLEIAKQYGCSDRHEYR---W---------SVNTMLGKYRHITRSPDYEPFTH 303 Query: 309 AIDIEKL 315 D++K+ Sbjct: 304 LEDLDKM 310 >UniRef50_Q5KPM6 Putative uncharacterized protein n=2 Tax=Filobasidiella neoformans RepID=Q5KPM6_CRYNE Length = 407 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 64/180 (35%), Positives = 99/180 (55%), Gaps = 17/180 (9%) Query: 64 LVRVQLLGQFPQWLAENAARAVELGSW---GVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 LVR L+ QF A++ A A EL S G+DLNCGCP + G G LL+ PEL+ Sbjct: 147 LVRGCLIAQFASPNAKSLADAAELISPYVDGIDLNCGCPQRWAYNEGIGCALLRKPELVR 206 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKFE--IADAVQQAGATELVVHGRTKEQGYRA 178 + +++ + PVS+K+R+ DS ++K E I++A+ QAG + L +HGRT+ Q Sbjct: 207 DMVRGVKDRMGWGWPVSIKIRI--DSEQEKTEQLISNAL-QAGISHLTIHGRTRHQ---- 259 Query: 179 EHIDWQAIGDIRQRLN-----IPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNL 233 D + I+ ++ +P +ANG++W+ + A+Q +G VM RG L P L Sbjct: 260 PSTDPVNLPGIKFAVDCVKGEVPCVANGDVWELEDARQMRLHTGVQGVMAARGLLANPAL 319 >UniRef50_A7HK00 Dihydrouridine synthase DuS n=8 Tax=Thermotogaceae RepID=A7HK00_FERNB Length = 322 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 73/228 (32%), Positives = 104/228 (45%), Gaps = 19/228 (8%) Query: 5 LAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGTL 64 LAPM GV D R+L + Y TE + ++ VK+ P R Sbjct: 13 LAPMAGVTDYPFRKLCLQHGAY-FAFTEMISAKSVIINVKINEIYFPRQDEKDR------ 65 Query: 65 VRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAK 124 V VQL G L+E AA E G W VDLN GCP V G G+ LLKD + + Sbjct: 66 VGVQLFGSDYAELSEAAAIVQEKGLW-VDLNAGCPVSKVIKKGAGSALLKDLGEFRKVVR 124 Query: 125 AMREAVPAHLPVSVKVRLGWDSGEKKFE-IADAVQQAGATELVVHGRTKEQGYRAEHIDW 183 AMR + +VK R+GW+ E FE I + + + + VHGRT +Q Y Sbjct: 125 AMRSVLKR---FTVKTRIGWEKDE--FEKIYNILLEENVDAVFVHGRTAKQMYSG----- 174 Query: 184 QAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIP 231 +A I +P+ +G+I+ + + M SG V++ RG++ P Sbjct: 175 KATWKIYNPGFVPLYISGDIYTKEDIKNAMEQSGATGVIVARGSIGNP 222 >UniRef50_D1AII6 Dihydrouridine synthase DuS n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AII6_SEBTE Length = 309 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 59/238 (24%), Positives = 115/238 (48%), Gaps = 23/238 (9%) Query: 1 MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTP 60 M+++ APM G+ D R++L E + D+ TE V V L+ +++ Sbjct: 1 MQIITAPMAGITDYSFRKILYEFSP-DIIFTEMVDV--------------NALKYSNQRT 45 Query: 61 SGTLVR------VQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLK 114 ++R VQ+ G + E +E G +D+N GCP K + +G G+ LL Sbjct: 46 QDEILRKAGNEAVQIFGNKNEDFLEAVKLLIERGFDHIDINLGCPVKKIIRAGKGSALLL 105 Query: 115 DPELIYQGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQ 174 + + + + +++ + +S+K+R G+ + ++ G ++ +HGRT+EQ Sbjct: 106 ESDFVKELLLKLKKEFRNDIKLSMKIRTGYKNFSDPEYYVKLAEEYGLFQICIHGRTQEQ 165 Query: 175 GYRAEHIDWQAIGDIRQR-LNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIP 231 Y + DW I ++Q+ N+ +I NG++ D ++ ++ + D +M+ RG L P Sbjct: 166 LYSGQ-ADWNIIKKMKQKHKNVKIIGNGDLTDLKTIKEKTDSAKPDGIMLARGLLGNP 222 >UniRef50_D2MLS1 TIM-barrel protein, nifR3 family n=1 Tax=Bulleidia extructa W1219 RepID=D2MLS1_9FIRM Length = 234 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 50/132 (37%), Positives = 79/132 (59%), Gaps = 4/132 (3%) Query: 101 KTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVSVKVRLGWDSGEKK-FEIADAVQQ 159 K + S G+ LL+DP + AKA+ + + PV+VK+R GWD K E+A +++ Sbjct: 13 KKIIKSHAGSYLLQDPRQAQKVAKAVVD--HSKKPVTVKIRTGWDHQHKNAVEVAKVLEE 70 Query: 160 AGATELVVHGRTKEQGYRAEHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCD 219 AG + + +HGRTK Q Y +D + I ++Q ++IPVI NG+I + ++ + +G D Sbjct: 71 AGVSAITIHGRTKSQMYSGT-VDLEMIKQVKQAVSIPVIGNGDIKTVEDGKRMLEETGVD 129 Query: 220 AVMIGRGALNIP 231 A+MIGRG L P Sbjct: 130 AIMIGRGLLGRP 141 >UniRef50_B9L781 tRNA-dihydrouridine synthase B n=1 Tax=Nautilia profundicola AmH RepID=B9L781_NAUPA Length = 313 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 70/238 (29%), Positives = 110/238 (46%), Gaps = 28/238 (11%) Query: 4 LLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGT 63 LAP+ G D R ++ + D+ +E V + I + + + + Sbjct: 14 FLAPLAGYTDLPFRSVVKKFG-CDMTFSEMTNV----------NAIAYQNEKTQKMMEKS 62 Query: 64 LVRVQLLGQFPQWLAENAARAVELGS---W--GVDLNCGCPSKTVNGSGGGATLLKDPEL 118 + Q ENA +AVE+ + W G+D+N GCP SG G LLKD Sbjct: 63 PLENPYFVQIAANNVENAVKAVEIINELNWIDGIDINLGCPVNKARRSGFGGVLLKD--- 119 Query: 119 IYQGAKAMREAV-----PAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKE 173 + ++E V + PVS K+R+G+D + + A ++ G L +HGRT + Sbjct: 120 --ENRDFLKEVVGTIVKTSKKPVSAKMRIGFDKSVVE-DRAKLLEDLGIVFLTIHGRTVK 176 Query: 174 QGYRAEHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIP 231 Q Y+ E D+ I + IPVIANG+I D++ A+ + +G V IGRGA+ P Sbjct: 177 QMYKGEA-DYDEIKKGVNAVKIPVIANGDITDYEKAKYVLEYTGASGVSIGRGAVGKP 233 >UniRef50_A7BE39 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7BE39_9ACTO Length = 411 Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 71/218 (32%), Positives = 107/218 (49%), Gaps = 26/218 (11%) Query: 60 PSGTLVRVQLLGQFPQWLAENAARAVELG-SWGVDLNCGCPSKTVNGSGGGATLLKDPEL 118 P+ + +QL G P +A+ A VE + +DLN GCP V GGGA L +L Sbjct: 96 PAERVRSLQLYGVNPAVMAKAATMLVERDLTDHIDLNFGCPVPKVTKKGGGAALPWKRDL 155 Query: 119 IYQ------------GAKAMREAVPAHLPVSVKVRLGWDS-GEKKFEIADAVQQAGATEL 165 G +A RE +PV+VK+R+G DS E + A Q+ GA L Sbjct: 156 FSDLVGAVVRACDEAGERAGRE-----IPVTVKIRIGIDSEHETATDAALNAQKLGAAAL 210 Query: 166 VVHGRTKEQGYRAEHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGR 225 +H RT+ Q Y A H W I ++ L+IPV NG++++ A + +GCD + +GR Sbjct: 211 TLHARTQNQHY-AGHAHWDEIARLKDLLDIPVFGNGDVFEAADALAMLEQTGCDGISVGR 269 Query: 226 GALNIPNLSR--VVKYNEPRMP----WPEVVALLQKYT 257 GA P + R V Y+ +P EVV++++ + Sbjct: 270 GAQGRPWIFRDIVAAYHGGSIPPGPSLAEVVSVIECHA 307 >UniRef50_O83945 Probable tRNA-dihydrouridine synthase n=4 Tax=Treponema RepID=DUS_TREPA Length = 340 Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 74/245 (30%), Positives = 112/245 (45%), Gaps = 23/245 (9%) Query: 3 VLLAPMEGVLDSLVRELLTE---VNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRT 59 V AP+ G DS R + E Y ++ V D L ++ R E A Sbjct: 21 VFFAPVAGYSDSAFRSIAIEWEASFTYTEMVSSEAMVRDSLNTKRLIRRASNETHYA--- 77 Query: 60 PSGTLVRVQLLGQFPQWLAENAARAVELGSWG-VDLNCGCPSKTVNGSGGGATLLKDPEL 118 +Q+ G P +AE A V+ +D+N GCP + +G GA L ++P Sbjct: 78 -------IQIFGSNPAVMAETAKLIVDSAQPSCIDINAGCPMPKITKTGAGAALTREPTR 130 Query: 119 IYQGAKAMREAV---PAHLPVSVKVRLGWDSGEKKF-EIADAVQQAGATELVVHGRTKEQ 174 +Y+ KA+ +AV A +PV+VK+R GW+ + E A A AGA L +H RT Q Sbjct: 131 LYEVVKAVADAVYAQDARIPVTVKIRAGWEEAHLTWKEAARAAVDAGAQALALHPRTCAQ 190 Query: 175 GYRAEHIDWQAIGDIRQRL----NIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNI 230 Y E +W I D+ Q +PV +G++ + A+ + + C VM RGA+ Sbjct: 191 CYAGE-ANWDIIADLVQCARGWGEVPVFGSGDLHAPEDARAMLEHTACAGVMFARGAMGN 249 Query: 231 PNLSR 235 P + R Sbjct: 250 PFIFR 254 >UniRef50_C1EGQ3 Predicted protein n=2 Tax=Micromonas RepID=C1EGQ3_9CHLO Length = 353 Score = 91.7 bits (226), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 49/139 (35%), Positives = 79/139 (56%), Gaps = 4/139 (2%) Query: 91 GVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVSVKVRLGWDSGEKK 150 +D+N GCP K SG G+ LLK PE ++ +R +PA V+ K+RL ++ E+ Sbjct: 111 AIDINMGCPLKFSTASGAGSALLKKPETVHDILTTLRRNLPAETHVTCKIRL-LETIEQT 169 Query: 151 FEIADAVQQAGATELVVHGRTKEQGYR-AEHIDWQAIGDIRQRLNIPVIANGEIWDWQSA 209 E+A +++ G + VHGR Q R A H W I + + ++ PVIANG+++++ Sbjct: 170 VELARVIEKCGVSAFGVHGRYVGQRPRDAAH--WDKIKQVVESVSCPVIANGDVFEYSDF 227 Query: 210 QQCMAISGCDAVMIGRGAL 228 ++ A +G A M GRGA+ Sbjct: 228 EKIRAETGAAAAMCGRGAM 246 >UniRef50_Q5CSA9 Dus1p, tRNA dihydrouridine synthase (Fragment) n=3 Tax=Cryptosporidium RepID=Q5CSA9_CRYPV Length = 409 Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 54/167 (32%), Positives = 87/167 (52%), Gaps = 4/167 (2%) Query: 67 VQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAM 126 VQ G P+ L + A++ ++ G+D+N GCP GA LL +P+L+ + + Sbjct: 78 VQFCGNDPETLVK-ASKFIDDKVKGIDINFGCPQNIAKRGNYGAFLLSNPDLMERIISTL 136 Query: 127 REAVPAHLPVSVKVR-LGWDSGEKKFEIADAVQQAGATELVVHGRT-KEQGYRAEHIDWQ 184 E+ PVS K+R L + + ++ AGA + VHGRT +G +W+ Sbjct: 137 SES-DLKCPVSCKIRILDHHDLQPTINLIKRLESAGACMIAVHGRTMTSRGVLTGPANWE 195 Query: 185 AIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIP 231 A+ ++ R +IP IANG I +++ Q+C+ +G DAVM G L P Sbjct: 196 ALKILKSRCSIPFIANGGISNYEDIQKCLNYTGADAVMSAEGILENP 242 >UniRef50_A9UTQ9 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9UTQ9_MONBE Length = 328 Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 59/174 (33%), Positives = 89/174 (51%), Gaps = 7/174 (4%) Query: 69 LLGQFPQWLAENAARAVELGSWGVD---LNCGCPSKTVNGSGGGATLLKDPELIYQGAKA 125 L+ QF A AVEL + D LNCGCP + G G L +P+ + + Sbjct: 80 LVAQFAANNGPVLAHAVELMAPYADAFCLNCGCPQRWAIQDGLGCALTLNPDAMVDLVRH 139 Query: 126 MREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHIDWQA 185 R AVP H PVSVKVR+ D+ + E+ + GA + VHGRT + ++ H D Sbjct: 140 ARAAVPHH-PVSVKVRI-RDTAAETVELVRRAEAMGAAWISVHGRTPAERHQPVHYDMLK 197 Query: 186 IGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY 239 + ++ +++PV+ANG+I+ + A + +GCD +M RG L P L +Y Sbjct: 198 L--VKDSVSVPVVANGDIFTLKDADRVWNETGCDGIMAARGLLANPGLFEGGRY 249 >UniRef50_B1ZZ77 Dihydrouridine synthase DuS n=2 Tax=Opitutaceae RepID=B1ZZ77_OPITP Length = 384 Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 69/227 (30%), Positives = 105/227 (46%), Gaps = 8/227 (3%) Query: 5 LAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGTL 64 LAPM+ V D ++ D TEF RV Q ++ I L + + +G Sbjct: 21 LAPMQDVTDLTFMRVIAHYGAPDYFFTEFFRVHSQ---SRLEKHIVRCLDDNT---TGRP 74 Query: 65 VRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAK 124 + Q++G+ + L A + G+DLN GCP+ V G LL+D + + Sbjct: 75 IFAQVIGEDLEQLVRTARELQQHPIAGIDLNLGCPAPKVYKKNVGGGLLRDLAHVDRILG 134 Query: 125 AMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHIDWQ 184 A+R A P L +VK+R+G+D + D V L VHGRT ++ YR+ + + Sbjct: 135 ALRAATPGGL-FTVKMRIGFDDTTPFEPMLDLVNAHRVDLLSVHGRTVKEMYRSR-VHYD 192 Query: 185 AIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIP 231 I QR+ PV+ANG + A + +G VMIGR A+ P Sbjct: 193 FIARAVQRVRCPVLANGNVTSAPRAVAILRETGAAGVMIGRHAIRNP 239 >UniRef50_B9PUI2 Dihydrouridine synthase domain-containing protein, putative n=3 Tax=Toxoplasma gondii RepID=B9PUI2_TOXGO Length = 608 Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 66/192 (34%), Positives = 92/192 (47%), Gaps = 28/192 (14%) Query: 65 VRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAK 124 V VQ G P L AA+ VE VD+N GCP GA LL +PEL+ Sbjct: 211 VFVQFCGDSPATLL-AAAQLVEDEVEAVDVNFGCPQGIARRGHYGAFLLNEPELLVDIVS 269 Query: 125 AMREAVPAHLPVSVKVR-----------------LGWDSGEK---KFEIADAVQQAGATE 164 + + + PV+ K+R L D + + DA + AG Sbjct: 270 TLHKHLKT--PVTCKMRKVSPRNPRDALPRSEAALVLDEERRLQDTLRLCDAFEAAGCAC 327 Query: 165 LVVHGRTKEQGYRAEHI---DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAV 221 L +HGRTKE+ +A + DW AI ++QRL+IPVIANG + ++ A +C+ +G DAV Sbjct: 328 LCIHGRTKEE--KAAFVGPCDWLAIRHVKQRLSIPVIANGAVETYEDALRCLEFTGADAV 385 Query: 222 MIGRGALNIPNL 233 M G L+ P L Sbjct: 386 MSAEGLLDNPML 397 >UniRef50_Q9RDC6 Putative uncharacterized protein SCO2497 n=4 Tax=Bacteria RepID=Q9RDC6_STRCO Length = 406 Score = 90.5 bits (223), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 75/239 (31%), Positives = 116/239 (48%), Gaps = 24/239 (10%) Query: 3 VLLAPMEGVLDSLVRELLTEVND-YDLCITEFVR----VVDQLLPVKVFHRICPELQNAS 57 V+LAPM G+ ++ R L E + L ++E + V +++ H +A+ Sbjct: 27 VVLAPMAGITNAPFRTLCREFSGGKGLFVSEMITTRALVERNEKTMQLIH------FDAT 80 Query: 58 RTPSGTLVRVQLLGQFPQWLAENAARAVELG-SWGVDLNCGCPSKTVNGSGGGATLLKDP 116 TP +QL G P + + E G + +DLN GCP V GGG+ L Sbjct: 81 ETPR----SIQLYGVDPVTVGKAVRMIAEEGLADHIDLNFGCPVPKVTRKGGGSALPYKR 136 Query: 117 ELIYQGAKAMREAV--PAHLPVSVKVRLGWDSGEKKFEIADAVQ-QAGATELVVHGRTKE 173 L+ +REAV LPV++K+R G D + A + + G T + +HGRT Sbjct: 137 HLLRA---IVREAVTGAGDLPVTMKMRKGLDDDHLTYLDAGRIAVEEGVTAIALHGRTTA 193 Query: 174 QGYRAEHIDWQAIGDIRQRL-NIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIP 231 Q Y DW AI +++ + IPV+ NG+IW + A + + +GCD V++GRG L P Sbjct: 194 QHYGGT-ADWDAIARLKEHVPEIPVLGNGDIWSAEDALRMVRETGCDGVVVGRGCLGRP 251 >UniRef50_A6DU09 Dihydrouridine synthase family protein n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DU09_9BACT Length = 334 Score = 90.5 bits (223), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 79/272 (29%), Positives = 130/272 (47%), Gaps = 21/272 (7%) Query: 3 VLLAPMEGVLDSLVRELLTEV---NDYDLCITEFVRVVDQLLPV---KVFHR--ICPELQ 54 + LAPME V D++ R++L E + + +EF+ P+ KV HR I E + Sbjct: 13 IALAPMEDVTDTVFRQILLETAQPKNLQVVFSEFISTDGLCHPIGHDKVIHRFLISDEER 72 Query: 55 NASRTPSGTLVRVQLLGQFPQWLAENAARAVELGSW-GVDLNCGCPSKTVNGSGGGATLL 113 + + +V Q+ G+ P +E ++ V+ + GVD+N GCP + GG + L+ Sbjct: 73 KLLKEKNIKIV-AQVWGKNPDKFSEAISKYVDPEVFDGVDINMGCPVAKIVKQGGCSALI 131 Query: 114 KDPELIYQGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKE 173 PE+ + A + A LPVSVK R G + K E + + +++HGRT++ Sbjct: 132 NTPEIAKELVLAAKAAT--KLPVSVKTRTGI-TAHKTEEWMTHLLEVEPAAIILHGRTQK 188 Query: 174 QGYRAEHI-DWQAIGD---IRQRL--NIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGA 227 Q ++E + W I +R RL +IP NG++ + A Q D MIGRG Sbjct: 189 Q--QSEGLASWDEIAKGARVRDRLKPHIPFWGNGDVRSIEQAHQLCQEHKLDGAMIGRGV 246 Query: 228 LNIPNLSRVVKYNEPRMPWPEVVALLQKYTRL 259 + P + + +P E +ALL ++ L Sbjct: 247 FHNPWIFNTDLLGDNVLPPEEKIALLWRHASL 278 >UniRef50_D2VPP8 Predicted protein n=1 Tax=Naegleria gruberi RepID=D2VPP8_NAEGR Length = 427 Score = 90.1 bits (222), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 51/155 (32%), Positives = 79/155 (50%), Gaps = 6/155 (3%) Query: 91 GVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHL--PVSVKVRLGWDSGE 148 G+DLNCGCP V GA L+ P+ I+ + + P+ VK+RL + Sbjct: 206 GIDLNCGCPQPYVMKESLGAALVTKPQKIFDMVHEANNKFISGMSRPIGVKIRLHPEDDT 265 Query: 149 KKF----EIADAVQQAGATELVVHGRTKEQGYRAEHIDWQAIGDIRQRLNIPVIANGEIW 204 +F E+A ++ AGA+ + VHGRT +Q + ++ I+Q LN+PV+ NG+I+ Sbjct: 266 LEFRKTIELARQIEMAGASWVTVHGRTHKQRTKNTKVNPDGPKTIKQILNVPVMHNGDIF 325 Query: 205 DWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY 239 + + +GCD VM RG L+ P L Y Sbjct: 326 TLGDSDRFAKETGCDGVMSARGLLSNPALFSGYDY 360 >UniRef50_Q6C4K2 YALI0E26059p n=1 Tax=Yarrowia lipolytica RepID=Q6C4K2_YARLI Length = 359 Score = 90.1 bits (222), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 61/189 (32%), Positives = 97/189 (51%), Gaps = 13/189 (6%) Query: 48 RICPELQNASRTPSGTLVRVQLLGQFPQWLAENAARAVELGSW---GVDLNCGCPSKTVN 104 R+C N P + VQL G AE+ +AV++ GV +NCGCP K Sbjct: 88 RLCDFTTNKDDFP----LIVQLGGN----NAEDMVKAVKMLQPYVDGVGINCGCPIKEQI 139 Query: 105 GSGGGATLLKDPELIYQGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATE 164 G GA L+ P+L+ + A+R+ A + V VK+R+ D + A V+ AGA Sbjct: 140 REGVGAALMTAPDLVAEMVAAIRKECGAEIYVEVKMRIHKDLND-TVHFAKLVEAAGADS 198 Query: 165 LVVHGRTKEQGYRAEHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIG 224 + VHGR Q R ++ I ++ +++PVIANG+ + + ++ + ++GCD VM Sbjct: 199 ISVHGRLVPQRSRTAP-NYDGIKIVKDSVDVPVIANGDAFTTTNIEEIVELTGCDGVMAA 257 Query: 225 RGALNIPNL 233 RG L+ P + Sbjct: 258 RGILSNPAM 266 >UniRef50_C1E909 tRNA-dihydrouridine synthase (Fragment) n=2 Tax=Micromonas RepID=C1E909_9CHLO Length = 353 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 66/212 (31%), Positives = 106/212 (50%), Gaps = 12/212 (5%) Query: 67 VQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAM 126 VQ P L + AA V GVD+N GCP + GA L+ D E ++ + Sbjct: 94 VQFCANDPDMLLK-AASIVAPHCDGVDINFGCPQRIAKRGRYGAFLMDDWETVHNLINKL 152 Query: 127 REAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAE-HIDWQA 185 + + +PV+ K+R+ +D E + A V+ AGA + VHGRT+EQ A+ +W Sbjct: 153 DKHL--SVPVTAKIRV-YDDLETSLKYAKMVEAAGAQLIAVHGRTREQKRAADVRANWAF 209 Query: 186 IGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSR---VVKYNEP 242 I +I+++L +PV+ANG+I A++C+ +G D V+ L P+L + ++P Sbjct: 210 IREIKKQLKVPVLANGDIRTLAEAEKCLEATGADGVLSAEPLLENPSLFSDPPLYSPSDP 269 Query: 243 RMPWP---EV-VALLQKYTRLEKQGDTGLYHV 270 P P +V LL +Y + + T L V Sbjct: 270 AHPLPVEGDVNCELLHEYLEITRTYQTPLRMV 301 >UniRef50_B0EC90 tRNA-dihydrouridine synthase, putative n=2 Tax=Entamoeba RepID=B0EC90_ENTDI Length = 340 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 70/231 (30%), Positives = 113/231 (48%), Gaps = 11/231 (4%) Query: 4 LLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGT 63 +LAPM D R +L + +LC T V + + KV+ E+ N S P Sbjct: 26 ILAPMVDGSDLTFR-ILVRRHGVNLCYTPMV-LSKMFVESKVYRN---EVVN-SLDPKER 79 Query: 64 LVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGA 123 + +Q++G +A A+ ++ +D+N GCP K GA L D + + Sbjct: 80 PIIIQVVGSDANEMAR-TAKFLQSYCDAIDINLGCPQKIAQKGNYGAYLALDFDHTKEIV 138 Query: 124 KAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRT-KEQGYRAEHID 182 A+ EAV ++PV KVR+ ++ +K + + +Q+ G + VHGRT E+ H Sbjct: 139 NAVIEAV--NIPVYCKVRV-FEDEDKTMKFVEMLQECGIWGIAVHGRTINEKQSMNYHAR 195 Query: 183 WQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNL 233 W I I+++L IPVIANGE+ + ++C ++ D MIG G L P + Sbjct: 196 WNYIAKIKEQLKIPVIANGEMRSREKIEECKKVTHSDGYMIGFGLLMNPGM 246 >UniRef50_D2NNX0 tRNA-dihydrouridine synthase n=3 Tax=Actinobacteridae RepID=D2NNX0_9MICC Length = 442 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 71/237 (29%), Positives = 114/237 (48%), Gaps = 20/237 (8%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 V+LAPM GV + R L +E L +TE V + R ++ P Sbjct: 78 VVLAPMAGVTNKAFRRLCSEYGG-GLYVTEMVTAR------ALVERKPESMRIIEHDPDE 130 Query: 63 TLVRVQLLGQFPQWLAENAARAVEL-----GSWGVDLNCGCPSKTVNGSGGGATLLKDPE 117 + +Q+ G A N +AV + + +DLN GCP+ V GGGA L + Sbjct: 131 KIRSIQIYGVD----AVNVGKAVRMVVEEDRADHIDLNFGCPAPKVTRRGGGAALPWKTD 186 Query: 118 LIYQGAK-AMREAVPAHLPVSVKVRLGWDSGEKKF-EIADAVQQAGATELVVHGRTKEQG 175 L + A++EA +P+++K+R G D F E A + AG + +HGRT Q Sbjct: 187 LFTAIVQTAVKEASRNDIPLTIKMRKGIDDDHITFLESAKIARDAGVAAIALHGRTAAQH 246 Query: 176 YRAEHIDWQAIGDIRQRL-NIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIP 231 Y + DW +I +R+ + ++P++ NG+I+ + A + + +G D V+IGRG P Sbjct: 247 YSGK-ADWDSIAQLRELIPDVPILGNGDIFSAEDAVRMVEQTGVDGVVIGRGCQGRP 302 >UniRef50_A8F480 Dihydrouridine synthase DuS n=1 Tax=Thermotoga lettingae TMO RepID=A8F480_THELT Length = 305 Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 79/305 (25%), Positives = 147/305 (48%), Gaps = 27/305 (8%) Query: 8 MEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGTLVRV 67 M G+ + R++ T TE + + K R+ P+ + P+ V V Sbjct: 1 MAGITNRAFRKICT-FWGAQFSFTEMISAESVVRNFKTVQRMLPKDE-----PN---VAV 51 Query: 68 QLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMR 127 QL G P+ LA+ AA+ VE + +D+N CP K V G LL D E + + +++ Sbjct: 52 QLFGNDPKTLAQ-AAKIVEPYAAWIDINAACPVKKVIKKNSGGALLNDLERLEKIIGSVK 110 Query: 128 EAVPAHLPVSVKVRLGWDSGEKKF--EIADAVQQAGATELVVHGRTKEQGYRAEHIDWQA 185 +V PV+VK+R+G+ EK +I + +AGA + VHGRT Q Y +A Sbjct: 111 SSV--QKPVTVKIRIGF---EKNILDQIVHSCIKAGADGIEVHGRTVVQKYSG-----KA 160 Query: 186 IGDIR-QRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIP-NLSRVVKYNEPR 243 D++ + I +G+I++ + + + +SG ++ +I RGAL P +++ + P+ Sbjct: 161 FWDLKLSQYGISTAVSGDIFEAEDFHKALEMSGANSALIARGALRKPWIFAQITQKRTPK 220 Query: 244 MPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNNSPDI 303 + E+ K+ +++ + D G + +++Q+++ A E + LN D+ Sbjct: 221 I--TEIKETFTKHLKMQIE-DEGERSIYKMRQFVAGYTHGMRGAREFREKFMKLNKPEDM 277 Query: 304 ARAIQ 308 +AI+ Sbjct: 278 EKAIE 282 >UniRef50_UPI0001C3129C dihydrouridine synthase DuS n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C3129C Length = 333 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 76/240 (31%), Positives = 118/240 (49%), Gaps = 21/240 (8%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFH----RICPELQNAS 57 RV+LAP+ G+ + VR L + L ++E V H + C EL Sbjct: 19 RVVLAPLAGIGNWFVR-LQAKRYGAGLAVSEMVSS-------HAIHYGNEKTCTELLRVH 70 Query: 58 ----RTPSGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLL 113 R +G V +QL G P + AARA E G+ +DLN GCP V +G GA L+ Sbjct: 71 PDEWRAGAGGPVSIQLFGNDPDIMRSAAARAAETGANLIDLNMGCPVPKVCKTGAGAALV 130 Query: 114 KDPELIYQGAKAMREAVPAHLPVSVKVRLGWDSGEKK-FEIA-DAVQQAGATELVVHGRT 171 KDP+L + A+A E + LPV+VK+R G G++ E+A V AG L +H R Sbjct: 131 KDPDLAVEIARAAAEG--SGLPVTVKLRPGLRPGDRNGIELAYRLVADAGIAGLCIHPRH 188 Query: 172 KEQGYRAEHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIP 231 Q + D++ + + L +PV+ +G + + ++ +G +AV++ RG+L P Sbjct: 189 ASQQHSGRP-DYELAKRLVEELPVPVLISGGLRSAELVREVFEFTGAEAVLLARGSLGNP 247 >UniRef50_A8J121 Predicted protein n=1 Tax=Chlamydomonas reinhardtii RepID=A8J121_CHLRE Length = 368 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 87/168 (51%), Gaps = 5/168 (2%) Query: 67 VQLLGQFPQWLAENAARAV--ELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAK 124 VQL G P+ L E A R + E G VDLN GCP + + GGG+ L P L + Sbjct: 53 VQLYGVKPEQL-EQAVRLLVCEHGVQHVDLNFGCPVRKITARGGGSALPLRPRLFAKLVA 111 Query: 125 AMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQA-GATELVVHGRTKEQGYRAEHIDW 183 A PV+VK R+G A + +A GA LV+H RT +Q Y A +DW Sbjct: 112 AAVAGAGGEAPVTVKFRVGLTPELPTHLQAGRIAEAEGAAALVLHARTADQLY-ASPVDW 170 Query: 184 QAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIP 231 A+ + + + IPV+ NG++++ A + + +GC VM+GR A+ P Sbjct: 171 AAVRALVEAVRIPVVGNGDVFEGADALRLLRETGCAGVMVGRAAVGRP 218 >UniRef50_C8X0F5 Dihydrouridine synthase DuS n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X0F5_DESRD Length = 341 Score = 88.6 bits (218), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 78/237 (32%), Positives = 111/237 (46%), Gaps = 21/237 (8%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVV------DQLLPVKVFHRICPELQN 55 R LL+PM GV +R LL + + L TE ++ PV FHR EL Sbjct: 23 RFLLSPMVGVTHVALRRLLHDFGGFGLHWTEMCSASAVLQEDPRISPVFRFHR--DEL-- 78 Query: 56 ASRTPSGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKD 115 TLV Q++G P+ +A A R + G +GVD+N GC V G GA LL+D Sbjct: 79 ------ATLV-CQIMGSEPETMAAAARRIQDEGFFGVDINMGCCVAAVRQQGAGAALLRD 131 Query: 116 PELIYQGAKAMREAVPAHLPVSVKVRLGW-DSGEKKFEIADAVQQAGATELVVHGRTKEQ 174 A+R+AV +P+ VK+R GW D G A A +AGA L+VH R Sbjct: 132 ISRAAAIVDAVRQAV--DIPLFVKLRSGWTDQGPVVVHAARACAKAGADALIVHPRLAPD 189 Query: 175 GYRAEHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIP 231 R W+ I + + +++PV NG ++ A + +GC + +GR A P Sbjct: 190 -RRTRPPQWRDIRAVCEAVDLPVFGNGNVFTADDATAMLRQTGCQGIALGRMAAARP 245 >UniRef50_A7H1K2 tRNA-dihydrouridine synthase B n=14 Tax=Campylobacter RepID=A7H1K2_CAMJD Length = 308 Score = 88.6 bits (218), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 71/238 (29%), Positives = 118/238 (49%), Gaps = 28/238 (11%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVR----VVDQLLPVKVFHRICPELQNASR 58 + LAPM G D R ++ + D+ I+E + V + + + R EL+N Sbjct: 9 LFLAPMAGFSDLPFRNVVKKFG-ADITISEMISSNALVYESSKTLHMLER--AELENP-- 63 Query: 59 TPSGTLVRVQLLGQFPQWLAENAARAVELGSW-----GVDLNCGCPSKTVNGSGGGATLL 113 VQ+ G + L +AV++ + G+D NCGCP V G+ LL Sbjct: 64 ------YIVQIAGGDKEVLK----KAVQMLNKMDFVDGIDFNCGCPVNKVVKQCAGSALL 113 Query: 114 KDPELIYQGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKE 173 ++ EL ++E L SVK RLG++ + ++A + G + VHGRT++ Sbjct: 114 ENLELFKNLVGVIKENNKKSL-TSVKFRLGFNEKYPE-KMAKICESLGVDFVSVHGRTRK 171 Query: 174 QGYRAEHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIP 231 Q Y + D+++I + + IPVIANG+I + Q+A++ I+ CD +MIGR ++ P Sbjct: 172 QLYSGK-ADYESIASAKASVKIPVIANGDI-NAQNAKEVYKITKCDGLMIGRASVGNP 227 >UniRef50_Q6AKJ6 Putative uncharacterized protein n=1 Tax=Desulfotalea psychrophila RepID=Q6AKJ6_DESPS Length = 354 Score = 88.6 bits (218), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 83/319 (26%), Positives = 137/319 (42%), Gaps = 31/319 (9%) Query: 5 LAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGTL 64 LAPM G+ S +R L+ ++ L TE + + LP H TP Sbjct: 46 LAPMVGLSHSALRSLIADLGGCGLFYTEML--AARRLP----HENPAVSSYLHTTPCERP 99 Query: 65 VRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAK 124 + QL +++A + LG GVD+N GCP+ +V G GA L +D + + Sbjct: 100 LIYQLFIADVKYVAPALDKIHRLGGDGVDINLGCPAPSVRRGGAGAALAEDWDRVRDIVS 159 Query: 125 AMREAVPAHLPVSVKVRLGWDSGEKKF-EIADAVQQAGATELVVHGRTKEQGYRAEHIDW 183 + R L +S K+R+G E + ++ G L VH R + + W Sbjct: 160 SARRHT--DLTLSAKIRVGHVGKEAHLLDFCKMLEAEGVDLLAVHARYHGEKF-CRKPRW 216 Query: 184 QAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIP-----------N 232 Q + I ++L+IP+ ANG I+ A++C+ +SG +M+GRGA+ P Sbjct: 217 QLLAPICEQLDIPIFANGGIFSVDDARRCLELSGAAGLMLGRGAVERPWLFNEIAREVYG 276 Query: 233 LSRVVKYNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQ 292 L V + P + V + + E+Q + RIK++ Y+ K + L Sbjct: 277 LDLPVAESRPVEIYFRFVQKMVEIFAPERQ-------LGRIKEFTHYIAKNHQFGHHLAS 329 Query: 293 HVRVLNNSPDIARAIQAID 311 V+ S + A+QA + Sbjct: 330 AVQ---KSHTVEEAVQAAE 345 >UniRef50_Q2RZL4 NifR3 family enzyme n=2 Tax=Rhodothermaceae RepID=Q2RZL4_SALRD Length = 443 Score = 88.6 bits (218), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 77/267 (28%), Positives = 124/267 (46%), Gaps = 19/267 (7%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 + LAPME V D R +L + D+ TEFV L + H+ E+ + R Sbjct: 77 LFLAPMEDVSDPPFR-ILCKRYGADMMYTEFVSSAGLLREQEHEHQKL-EIFDEERP--- 131 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 + +Q+ G + G +D+N GCP + + GGA +L++ + + Sbjct: 132 --IGIQVWGGGIDEVRNATPMVDAAGPDVIDINFGCPVRKIVQKDGGAGVLRNLDKMRNI 189 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGEKKF-EIADAVQQAGATELVVHGRTKEQGYRAEHI 181 A+ E A PV+VK RLGWD ++A ++ G L VH RT+EQ Y+ + Sbjct: 190 TAAVMEE--ATRPVTVKTRLGWDDDSIHIVDVARMLEDMGVAALTVHARTREQKYKGD-A 246 Query: 182 DWQAIGDIRQR--LNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIP-NLSRVVK 238 W+ + I++ ++P I NG+ D ++ + +G D VM+GRGAL P R Sbjct: 247 RWEWLRTIKEEGTRDMPFIGNGDALDPEAIEAMFEETGVDGVMLGRGALGNPWIFERAKT 306 Query: 239 YNE-----PRMPWPEVVALLQKYTRLE 260 Y E P W E V ++ ++ L+ Sbjct: 307 YMETGELPPPPDWEERVQVVAEHLSLK 333 >UniRef50_B8P1L7 Predicted protein (Fragment) n=3 Tax=Basidiomycota RepID=B8P1L7_POSPM Length = 313 Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 60/165 (36%), Positives = 85/165 (51%), Gaps = 8/165 (4%) Query: 70 LGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREA 129 +G LA AAR V G DLNCGCP SG GA LL +P+L+ A+REA Sbjct: 79 IGSADPELAVQAARTVVQDVAGFDLNCGCPKPFSTHSGMGAALLSNPDLLCSILTALREA 138 Query: 130 VPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAE-HID-WQAIG 187 +P + +S K+RL S E ++ + + G L VH RT+ R + HID + I Sbjct: 139 MPPEISISAKIRL-LPSQEDTLKLVERIVNTGVNALTVHCRTRNMRKREKAHIDRLREIV 197 Query: 188 DIRQRL--NIPVIANGEIWDWQSAQQCMAIS---GCDAVMIGRGA 227 D + L ++ +I NG+ D+Q A + I+ G D+VMI A Sbjct: 198 DFVRGLGRDVALIENGDCEDYQDAIRIREITGYVGADSVMIATAA 242 >UniRef50_A7AQM0 Dihydrouridine synthase, putative n=1 Tax=Babesia bovis RepID=A7AQM0_BABBO Length = 355 Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 57/178 (32%), Positives = 91/178 (51%), Gaps = 5/178 (2%) Query: 81 AARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVSVKV 140 AAR ++ VDLN GCP G+ LL +P+L+ + V + V+ K+ Sbjct: 84 AARLLKGHVSAVDLNLGCPQAIAKDGHYGSFLLDEPDLVTGIVSRVTREVG--IAVTCKI 141 Query: 141 R-LGWDSGEKKFEIADAVQQAGATELVVHGRTK-EQGYRAEHIDWQAIGDIRQRLNIPVI 198 R + DS + + +++Q+G L VHGR + E+G DW AI I+ RL IPVI Sbjct: 142 RKVDKDSLQSTLNLCYSLEQSGCKALTVHGRHRSEKGTNVGAADWDAIRIIKSRLRIPVI 201 Query: 199 ANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNEPRMPWPEVVALLQKY 256 ANG I + ++C++ +G DAVM L P L + Y+ + E + ++++Y Sbjct: 202 ANGGIETFADVERCLSYTGADAVMSSESLLERPYLFSGITYDHLDI-MDEYLGIVRRY 258 >UniRef50_D2VPF2 Predicted protein n=2 Tax=Naegleria gruberi RepID=D2VPF2_NAEGR Length = 450 Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 60/193 (31%), Positives = 90/193 (46%), Gaps = 16/193 (8%) Query: 46 FHRICPELQNASRTPSGTLVRVQLLGQFPQWLAENAARAVELGSW---GVDLNCGCPSKT 102 F++ P+L+ V Q P+ + R +L +DLN GCP + Sbjct: 150 FYQFNPDLEGP--------VFAQFCTNDPETFVQCGKRVWDLSKQKISAIDLNLGCPQRI 201 Query: 103 VNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGA 162 G+ L++D + ++ +P +PV+ K+R+ ++ E V AGA Sbjct: 202 ARRGRYGSFLMEDLQTVHSIINKAHLELP--MPVTAKIRI-FEDLELTMNYVKTVVDAGA 258 Query: 163 TELVVHGRTKEQ-GYRAEHIDWQAIGDIRQRL-NIPVIANGEIWDWQSAQQCMAISGCDA 220 L VHGRT+EQ G + DW I IR++ IP+IANG I +Q Q C+ + DA Sbjct: 259 QVLCVHGRTREQKGANQNYADWTVIRAIREQFPQIPMIANGNIRTFQDVQDCLEYTRVDA 318 Query: 221 VMIGRGALNIPNL 233 VM G G L P L Sbjct: 319 VMSGEGLLENPAL 331 >UniRef50_B7XJM7 tRNA-dihydrouridine synthase 1 n=1 Tax=Enterocytozoon bieneusi H348 RepID=B7XJM7_ENTBH Length = 309 Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 49/170 (28%), Positives = 91/170 (53%), Gaps = 9/170 (5%) Query: 67 VQLLGQFPQWLAENAARAVELGSW--GVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAK 124 +Q+ G P +E A +++ + +D+N GCP G+ L+ D E + Sbjct: 55 IQICGNDP---SEMLATCLQIQQYCDAIDINLGCPQNIAKKGNYGSYLMDDFEKVKNIIS 111 Query: 125 AMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQ-GYRAEHIDW 183 + E + +P+ K+R+ ++S EK A ++++G + L VHGRT+EQ G ++ + Sbjct: 112 TLAEQLT--VPIFCKIRV-FESIEKTITYAKMIEKSGCSLLAVHGRTREQKGQNTGYVSF 168 Query: 184 QAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNL 233 I ++ L+IPV++NG + + + + I+GCD +MIG L IP++ Sbjct: 169 DHIRAVKNALSIPVVSNGGVLTHRDIKNAVEITGCDGIMIGEPILFIPSI 218 >UniRef50_C2D6C5 Possible tRNA-dihydrouridine synthase n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D6C5_9ACTN Length = 390 Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 71/236 (30%), Positives = 109/236 (46%), Gaps = 16/236 (6%) Query: 1 MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTP 60 M L APM GV +S R ++ + +E V V + + +C T Sbjct: 35 MPFLAAPMAGVTNSAYR-IMNRLGGAQYAYSEMVSVAGLCMKNQATRELC-----LPHTA 88 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVEL---GSWGVDLNCGCPSKTVNGSGGGATLLKDPE 117 L+ VQL G P A EL +D+N CP V G G+ L+ DP Sbjct: 89 EPNLI-VQLFGSDPVQFQRACALVGELLGDKLSCIDINMACPVPKVTKRGEGSALMCDPH 147 Query: 118 LIYQGAKA-MREAVPAHLPVSVKVRLGWD-SGEKKFEIADAVQQAGATELVVHGRTKEQG 175 +A +RE +PV+ K+R G+ E E A+Q AGA+ L VHGR +Q Sbjct: 148 RACALVRACLREV---RVPVTCKIRRGYYMDHESAAEFGRALQDAGASALAVHGRFAKQL 204 Query: 176 YRAEHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIP 231 Y+ E +W++I + + ++IPVIA+G++ + A + + + AV+I RG P Sbjct: 205 YKGE-ANWESIKRVVEAVDIPVIASGDVMSAEDACRILYKTQAHAVLIARGTYGNP 259 >UniRef50_Q6MNE9 Nitrogen regulation protein nifR3 n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MNE9_BDEBA Length = 352 Score = 87.8 bits (216), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 67/230 (29%), Positives = 112/230 (48%), Gaps = 16/230 (6%) Query: 3 VLLAPMEGVLDSLVRELLTE---VNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRT 59 + LAPM G+ +RE++ + Y + TE + + +P + + PE A+ Sbjct: 18 LCLAPMVGLTHVALREVMRDYLPAEAYTIWPTEMLN--SRRIPGENLEKT-PETMRAAYE 74 Query: 60 PSGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELI 119 P + Q+LG +AE+ R VE G+ +D+N GCP + G L+ DP Sbjct: 75 PG---LVPQILGNEEDAIAESVKRLVEWGAEAIDINMGCPVQKALKHNYGVALMGDPAY- 130 Query: 120 YQGAKAMREAVP-AHLPVSVKVRLGWDSGE--KKFEIADAVQQAGATELVVHGRTKEQGY 176 A+ +R V + +PVSVK+R + E + ++Q+GA + +H RT Q Sbjct: 131 --AAEVVRMTVKNSTVPVSVKLRAVGSTKEFDELLTFVSGLRQSGAAWVCLHPRTAAQKR 188 Query: 177 RAEHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRG 226 R + DW+ I + + ++ PVI NG++ + A + +GCD M GRG Sbjct: 189 RG-NADWEQIKQLHKAVDFPVIGNGDVQTYDDAINMLKETGCDMAMAGRG 237 >UniRef50_C0NEG2 tRNA-dihydrouridine synthase n=5 Tax=Ajellomyces RepID=C0NEG2_AJECG Length = 583 Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 59/170 (34%), Positives = 86/170 (50%), Gaps = 7/170 (4%) Query: 67 VQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAM 126 VQ P L + AARAVE VDLN GCP GA L + P+LIY+ + Sbjct: 120 VQFCANNPDELLQ-AARAVEPFCDAVDLNLGCPQGIARKGHYGAFLQEHPDLIYELINTL 178 Query: 127 REAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQ-GYRAEHIDWQA 185 + +PV+ K R+ ++ EK E A + AGA+ + VHGR +EQ G+ DW Sbjct: 179 HTQL--SIPVTAKFRI-QETKEKTLEYARIILSAGASIITVHGRRREQKGHNTGLADWSY 235 Query: 186 IGDIRQRL--NIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNL 233 I +R+ L + + ANG I + ++C+ +G D VM G+L P + Sbjct: 236 IRYLRENLPADTVIFANGNILNHGDIEKCLEATGADGVMSAEGSLCDPTI 285 >UniRef50_Q00XL7 TRNA-dihydrouridine synthase (ISS) n=1 Tax=Ostreococcus tauri RepID=Q00XL7_OSTTA Length = 295 Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 44/97 (45%), Positives = 61/97 (62%), Gaps = 1/97 (1%) Query: 135 PVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHIDWQAIGDIRQRLN 194 P++VK+RLG +S +IA+ ++ AGA ++VHGRTKEQ Y + D+ I I Sbjct: 36 PLTVKIRLGIESSSPATKIAERLENAGAAAIIVHGRTKEQRY-TKSADYDVIRQIVSERA 94 Query: 195 IPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIP 231 IPVI NG++ W AQQ + SGC +M+GRGAL P Sbjct: 95 IPVIGNGDVLTWYDAQQRLDYSGCAGIMVGRGALIKP 131 >UniRef50_D0LY25 TIM-barrel protein, yjbN family n=3 Tax=Bacteria RepID=D0LY25_HALO1 Length = 376 Score = 87.0 bits (214), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 73/238 (30%), Positives = 111/238 (46%), Gaps = 23/238 (9%) Query: 5 LAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGTL 64 +APM D R L +++ + L TE + + + H P + S Sbjct: 44 VAPMMECTDRHFRYFLRQISRHTLLYTEMI------VTGTIIHGDRPRYLDFSEAEHP-- 95 Query: 65 VRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAK 124 + +QL G + LA A A + G V+LN GCPS V+ GA L+ PE++ + + Sbjct: 96 IALQLGGDDAEALATCARIAEDWGYDEVNLNVGCPSSRVSSGSFGACLMARPEVVARAVE 155 Query: 125 AMREAVPAHLPVSVKVRLGWDSG---EKKFEIADAVQQAGATELVVHGR-------TKEQ 174 AMR AV +PV+VK R+G D E E V +AGA VH R + ++ Sbjct: 156 AMRAAVA--IPVTVKHRIGIDDRDRYEDMREFVRVVAEAGADRFSVHARKAWLSGLSPKE 213 Query: 175 GYRAEHIDWQAIGDIRQRL-NIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIP 231 + + + +++ ++P+ NG I D SAQ+ +A DAVMIGR A N P Sbjct: 214 NREVPPLRYADVHRLKREFPHLPIEINGGIVDLDSAQEQLA--HVDAVMIGRAAYNTP 269 >UniRef50_Q72EB7 Dihydrouridine synthase family protein n=4 Tax=Desulfovibrio RepID=Q72EB7_DESVH Length = 332 Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 86/296 (29%), Positives = 128/296 (43%), Gaps = 23/296 (7%) Query: 5 LAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGTL 64 LAP+ GV RE++ + L T + +P + P NA + L Sbjct: 14 LAPLAGVGHVAFREVIDNLGGCGLLFTGMCNA--RAVPTEN-----PARSNAFTWRAEEL 66 Query: 65 VRV--QLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 R QL G P +AE A R G +GVD+N GC + G GA LL+D E + Sbjct: 67 ERCVCQLFGADPSEMAEAARRVEAEGFFGVDINMGCSVAAIVRRGCGADLLRDEERAVRM 126 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSG-EKKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 +++R AV PV VK R GW + +A + AGA LV H R R Sbjct: 127 VESVRRAV--DCPVLVKFRTGWSPDPQGAVALARRFEDAGADALVFHPRVAPD-RRTRPP 183 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNL----SRVV 237 I +++ + IPV+ NGE++ A + +GCD + +GR AL P + + +V Sbjct: 184 LRHHIRLVKEAVAIPVLGNGEVFTPGDAASMLETTGCDGISLGRIALGRPWVFAAWTGLV 243 Query: 238 KYNEPRMP--WPEV-VALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATEL 290 N P W ++ +ALL LE++ Y K++L Y + L Sbjct: 244 DDNPASNPDLWRDIPLALLDA---LERRHADRKYAARLFKKFLLYFIANFTYGNSL 296 >UniRef50_UPI0001BCCF0E nifR3 family TIM-barrel protein n=1 Tax=Aeromicrobium marinum DSM 15272 RepID=UPI0001BCCF0E Length = 429 Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 68/205 (33%), Positives = 104/205 (50%), Gaps = 15/205 (7%) Query: 67 VQLLGQFPQWLAENAARAVELGSWGVD---LNCGCPSKTVNGSGGGATLLKDPELIYQ-G 122 VQL G P + A A+ G GVD LN GCP V GGGA L L+ + Sbjct: 126 VQLYGIDPATVGR--AVAILCGDHGVDHVDLNFGCPVPKVTRKGGGAALPWKATLLGRIL 183 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGEKKF-EIADAVQQAGATELVVHGRTKEQGYRAEHI 181 +A+ A P +PV++K R G D + + + +G + +HGRT Q Y E Sbjct: 184 TEAVAAAAPFGVPVTMKTRKGIDDDHLTYLDAGHIAEDSGCAAIALHGRTAVQHYSGE-A 242 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSR------ 235 DW AI ++ ++IPV+ NG++W+ A + + +GCD V++GRG L P L R Sbjct: 243 DWAAIAALKAAVSIPVLGNGDVWEAADALRMVRETGCDGVVVGRGCLGRPWLFRDLAAAF 302 Query: 236 VVKYNEPRMP-WPEVVALLQKYTRL 259 + P +P EV+A+++++ L Sbjct: 303 TGEETVPALPTLGEVMAIMRRHAEL 327 >UniRef50_B7PPV8 tRNA-dihydrouridine synthase, putative n=1 Tax=Ixodes scapularis RepID=B7PPV8_IXOSC Length = 483 Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 86/168 (51%), Gaps = 5/168 (2%) Query: 67 VQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAM 126 VQ P+ L + A+R V VDLN GCP GA L D +L+ + + + Sbjct: 77 VQFCANDPEVLVQ-ASRLVVGHCCAVDLNLGCPQAIARAGHYGAFLQDDWDLLARMVQRV 135 Query: 127 REAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQ-GYRAEHIDWQA 185 V +P++ KVR+ + EK A ++ AG L VHGRT+EQ G W+ Sbjct: 136 HTQV--DVPITCKVRV-FPEVEKTVRYAQMLEAAGCQVLTVHGRTREQKGPHTGLASWEH 192 Query: 186 IGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNL 233 I +++ + IPVIANG I + A++C+ +G DAVM G L+ P L Sbjct: 193 IRAVKRSVKIPVIANGNIQYLEDAERCLRETGADAVMSAEGHLHNPYL 240 >UniRef50_Q5HJT5 Probable tRNA-dihydrouridine synthase n=92 Tax=Firmicutes RepID=DUS_STAAC Length = 328 Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 65/234 (27%), Positives = 111/234 (47%), Gaps = 13/234 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 +LAPME V D + R +++E D+ TEF P + H + L + + Sbjct: 14 FILAPMEDVTDIVFRHVVSEAARPDVFFTEFTNTESFCHPEGI-HSVRGRL---TFSEDE 69 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 + + G P+ E + + ++G G+DLN GCP V G G+ L+ P++ Sbjct: 70 QPMVAHIWGDKPEQFRETSIQLAKMGFKGIDLNMGCPVANVAKKGKGSGLILRPDV---A 126 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHID 182 A+ ++ LPVSVK RLG+ ++ + V + L +H RT+++ + + Sbjct: 127 AEIIQATKAGGLPVSVKTRLGYYEIDEWKDWLKHVFEQDIANLSIHLRTRKEMSKVD-AH 185 Query: 183 W---QAIGDIRQRL--NIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIP 231 W +AI ++R + N + NG+I D ++ + G D VMIGRG + P Sbjct: 186 WELIEAIKNLRDEIAPNTLLTINGDIPDRKTGLELAEKYGIDGVMIGRGIFHNP 239 >UniRef50_D2R6Z1 TIM-barrel protein, nifR3 family n=3 Tax=Planctomycetaceae RepID=D2R6Z1_9PLAN Length = 345 Score = 85.9 bits (211), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 79/241 (32%), Positives = 109/241 (45%), Gaps = 16/241 (6%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASR---- 58 +L APM G + R+++ E L TE V H E ++ R Sbjct: 15 ILQAPMAGYTNYAYRQMVREFGGAGLQATEMVNASG----FAWLHEH--EAEHPDRLWGV 68 Query: 59 TPSGTLVRVQLLGQFPQWLAENAAR-AVELGSWGVDLNCGCPSKTVN-GSGGGATLLKDP 116 + VQ+ P LA+ R A EL VD+N GCP K V + G+ LLK P Sbjct: 69 KEEARPLAVQMWDNDPATLAKVGERLANELHVSVVDINFGCPVKDVTEKAHSGSYLLKFP 128 Query: 117 ELIYQGAKAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQG 175 + I Q + + +A A PV+ K+RLG EIA V+ AGA L VHGRT Sbjct: 129 DRIAQIVERVVKAC-APTPVTAKIRLGCSRDAINAIEIAKVVESAGAAALTVHGRTAADF 187 Query: 176 YRAEHIDWQAIGDIRQRL-NIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLS 234 +R DW I +I+ L IP+I NG++ + + G D VMI R ++ P L Sbjct: 188 FRGT-ADWNRIAEIKPHLKKIPLIGNGDLDSPEKVIEAFRRYGVDGVMIARASMGRPWLF 246 Query: 235 R 235 R Sbjct: 247 R 247 >UniRef50_A4E892 Putative uncharacterized protein n=4 Tax=Collinsella RepID=A4E892_9ACTN Length = 317 Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 89/327 (27%), Positives = 140/327 (42%), Gaps = 33/327 (10%) Query: 1 MRVLLAPMEGVLDSLVRELLTE-VNDYDLCITEFVRV--VDQLLPVKVFHRICPELQNAS 57 M + LAPMEG+ + R + E D T F+ V K F I P Sbjct: 1 MILSLAPMEGITGHVFRRVHAECFGALDCYYTPFLPPPRVGNRFGGKAFKEIDP------ 54 Query: 58 RTPSGTLVRVQLLGQFPQWLAENAARAV-------ELGSWGVDLNCGCPSKTVNGSGGGA 110 Q L PQ +++NA V ++G V+LN GCPS TV G G+ Sbjct: 55 -------ANNQGLNVVPQLMSKNADEFVWAVQVLADMGYREVNLNLGCPSGTVVAKGKGS 107 Query: 111 TLLKDPELIYQGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGR 170 L++ + + + E P LPVSVK RLG ++ ++ + D + EL+VH R Sbjct: 108 GFLRNLDELEAFLSDVCERSP--LPVSVKTRLGLENDDEYERVLDLYCRMPLAELIVHPR 165 Query: 171 TKEQGYRAEHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCM-AISGCDAVMIGRGALN 229 ++ Y + G+ +R PV NG+I+D + + A G VM+GRG L Sbjct: 166 VQKDRYTGLPRK-EFYGETLERAPFPVAYNGDIFDLEDMDALVEAYPGTRHVMLGRGLLA 224 Query: 230 IPNLSRVVKYNEPRMPWPEVVALLQKYTRL--EKQGDTGLYHVARIKQWLSYLRKEYDEA 287 P L+R+VK P L + + L + G V R+K+W Y + + + Sbjct: 225 NPALARMVKGG----PAATAAELHRFHDTLFAAYAEEIGGNAVFRMKEWWFYAKCAFADP 280 Query: 288 TELFQHVRVLNNSPDIARAIQAIDIEK 314 + + VR + A++ + E+ Sbjct: 281 ATVHKIVRKTKKVDEYRAAVERVFREQ 307 >UniRef50_Q5KP54 Putative uncharacterized protein n=1 Tax=Filobasidiella neoformans RepID=Q5KP54_CRYNE Length = 610 Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 56/168 (33%), Positives = 85/168 (50%), Gaps = 5/168 (2%) Query: 67 VQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAM 126 VQ P L AA+ VE VD+N GCP G+ L + ELI++ + Sbjct: 154 VQFCANDPDILLA-AAKKVEHRCDAVDINFGCPQGIAKRGHYGSFLQDEWELIHKLISTL 212 Query: 127 REAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKE-QGYRAEHIDWQA 185 E + +PV+ K R+ D +K A ++ AGA L HGRT+E +G DW+ Sbjct: 213 HENL--SVPVTAKFRIFPDL-DKTIAYARMMEAAGAQILTCHGRTREMKGQNTGLADWEY 269 Query: 186 IGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNL 233 I ++++ + +PV ANG I + +CM ++GCD VM G L+ P + Sbjct: 270 IREVKKAVKVPVFANGNILYREDVDRCMEVTGCDGVMTAEGNLSNPAI 317 >UniRef50_C4VA23 Putative uncharacterized protein n=1 Tax=Nosema ceranae BRL01 RepID=C4VA23_NOSCE Length = 327 Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 47/142 (33%), Positives = 72/142 (50%), Gaps = 4/142 (2%) Query: 91 GVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVSVKVRLGWDSGEKK 150 +D+N GCP + G+ L+ D + + + + +PV+ K+R+ ++S EK Sbjct: 94 AIDINLGCPQEIARKGNYGSFLMDDLLKVKEIVTVLSNNLK--VPVTCKIRI-FESIEKS 150 Query: 151 FEIADAVQQAGATELVVHGRTKEQ-GYRAEHIDWQAIGDIRQRLNIPVIANGEIWDWQSA 209 E A ++QAG L VHGRT++Q G W I I+ LNIPVI+NG I + Sbjct: 151 VEYAKMIEQAGCKMLTVHGRTRDQRGLNTGLASWDHIRAIKASLNIPVISNGNIINNSDI 210 Query: 210 QQCMAISGCDAVMIGRGALNIP 231 C+ + CD VM+ L P Sbjct: 211 DNCVEYTKCDGVMVAETHLYNP 232 >UniRef50_P53759 tRNA-dihydrouridine synthase 1 n=19 Tax=Ascomycota RepID=DUS1_YEAST Length = 423 Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 63/201 (31%), Positives = 98/201 (48%), Gaps = 11/201 (5%) Query: 67 VQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAM 126 VQ P++L AA+ VE VDLN GCP G+ L+++ +LI+ + Sbjct: 91 VQFCANDPEYLLA-AAKLVEDKCDAVDLNLGCPQGIAKKGHYGSFLMEEWDLIHNLINTL 149 Query: 127 REAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQ-GYRAEHIDWQA 185 + + +PV+ K+R+ +D EK A V AGA L VHGR +EQ G + +W+ Sbjct: 150 HKNL--KVPVTAKIRI-FDDCEKSLNYAKMVLDAGAQFLTVHGRVREQKGQKTGLANWET 206 Query: 186 IGDIRQRLNIP----VIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNE 241 I +R N+P ANG I + +CM G DAVM G L P + V + Sbjct: 207 IKYLRD--NLPKETVFFANGNILYPEDISRCMEHIGADAVMSAEGNLYNPGVFNVGQTKN 264 Query: 242 PRMPWPEVVALLQKYTRLEKQ 262 +P V ++++Y ++ K+ Sbjct: 265 KEKIFPRVDKIIREYFQIVKE 285 >UniRef50_A4S141 Predicted protein (Fragment) n=1 Tax=Ostreococcus lucimarinus CCE9901 RepID=A4S141_OSTLU Length = 307 Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 58/170 (34%), Positives = 88/170 (51%), Gaps = 9/170 (5%) Query: 69 LLGQF----PQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAK 124 LL QF P+ L AA + GVD+N GCP + GA L+ D + + + Sbjct: 73 LLAQFCANDPEILL-RAATMIAPYCDGVDINFGCPQRIAKRGNYGAFLMDDWKTVEALIR 131 Query: 125 AMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAE-HIDW 183 + E +P +PV+ K+R+ +D E + A V+ AGA + VHGRT+EQ A+ +W Sbjct: 132 KLDEELP--VPVTAKIRV-YDDLETTLKYAKMVEAAGAQIVAVHGRTREQKRCADIRANW 188 Query: 184 QAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNL 233 I I+ L +PV+ANG+I A+ C+ +G D V+ L+ P L Sbjct: 189 AYIRAIKDALKVPVLANGDIRSLAEARACLEATGADGVLSAEPLLSNPAL 238 >UniRef50_C5LIP5 Ornithine decarboxylase n=4 Tax=Perkinsus marinus ATCC 50983 RepID=C5LIP5_9ALVE Length = 720 Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 63/217 (29%), Positives = 104/217 (47%), Gaps = 14/217 (6%) Query: 54 QNASRTPSGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLL 113 +N P + + Q G + E AA+ +E +DLN GCP G+ LL Sbjct: 356 KNFETAPGDSPLAAQFCGDDGDVIVE-AAKHIEDQVSCIDLNLGCPQGIARRGHYGSFLL 414 Query: 114 KDPELIYQGAKAMREAVPAHLPVSVKVRLGW---DSGEKKFEIADA------VQQAGATE 164 ++PEL+ + + M + + PVSVK+RL D G + ++A + G Sbjct: 415 EEPELVLRIVEKMVKGI--KCPVSVKIRLMTAKDDDGSGRPDVAATKEFVKRLDSLGVDL 472 Query: 165 LVVHGRTKE-QGYRAEHIDWQAIGDIRQRL-NIPVIANGEIWDWQSAQQCMAISGCDAVM 222 + +H RTKE +G + WQA ++R + +IP I NG I ++ ++C ++ CDAVM Sbjct: 473 IALHPRTKEWKGQLTQACWWQAAAEVRACVPDIPFIVNGGISCFEDVEKCFEVTKCDAVM 532 Query: 223 IGRGALNIPNLSRVVKYNEPRMPWPEVVALLQKYTRL 259 L +P L R + + P + E+V K+ R+ Sbjct: 533 SSECILEVPTLFRGPEKDGPALSQCELVEEYIKFARM 569 >UniRef50_C5DS92 ZYRO0B14872p n=1 Tax=Zygosaccharomyces rouxii RepID=C5DS92_ZYGRO Length = 406 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 61/209 (29%), Positives = 100/209 (47%), Gaps = 9/209 (4%) Query: 67 VQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAM 126 VQ P++L + AAR V+ VDLN GCP G+ L+++ +L+++ + + Sbjct: 82 VQFCANDPEYLLQ-AARLVQDKCDAVDLNLGCPQGIAKKGHYGSFLMEEWDLVHKLIRNL 140 Query: 127 REAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQ-GYRAEHIDWQA 185 E + +PV+ K+R+ + EK + A V AGA L VHGR +EQ G ++ DW+ Sbjct: 141 HENL--DVPVTAKIRI-FPEKEKSLQYARTVLDAGAQFLTVHGRLREQKGQQSGLADWET 197 Query: 186 IGDIRQRL--NIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNEPR 243 I +R L + +NG + +CM CDAVM G L P + + Sbjct: 198 IKYLRDNLPPDTVFFSNGNLLYPNDISRCMDQINCDAVMSAEGNLYNPGIFNAEDSQDKE 257 Query: 244 MPWPEVVALLQKYTRLEKQGDTGLYHVAR 272 +P V + ++Y + K + H +R Sbjct: 258 KVFPRVDVICREYFEIVKSYE--FSHASR 284 >UniRef50_B0CNE7 Predicted protein n=3 Tax=Agaricales RepID=B0CNE7_LACBS Length = 308 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 54/171 (31%), Positives = 83/171 (48%), Gaps = 13/171 (7%) Query: 70 LGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREA 129 +G LA AA+ V G+DLNCGCP +G GA LL +P+L+ A+R Sbjct: 105 IGSSDPELAVQAAKMVMQDVSGIDLNCGCPKPFSTHAGMGAALLTNPDLLCSILTALRRE 164 Query: 130 VPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHIDWQAIGDI 189 +P + V+ K+RL S E ++ + + G + L VH RT+ + D I + Sbjct: 165 MPPEITVTAKIRL-LPSQEDTLKLVERIVNTGISALTVHCRTRNMREK----DRAVIERL 219 Query: 190 RQRL--------NIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPN 232 R+ + I VI NG+ W+ A++ +G +VMI RGA P+ Sbjct: 220 REIVEFVEGLGRGIAVIENGDCMSWEDAKRVRETTGAHSVMIARGAEANPS 270 >UniRef50_O53835 Probable tRNA-dihydrouridine synthase n=107 Tax=Actinobacteria (class) RepID=DUS_MYCTU Length = 389 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 71/234 (30%), Positives = 107/234 (45%), Gaps = 7/234 (2%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 V+LAPM GV + R L ++ + + V + + + R + + + Sbjct: 24 VVLAPMAGVTNVAFRALCRQLEQSKVGTVSGLYVCEMVTARALIERHPVTMHMTTFSADE 83 Query: 63 TLVRVQLLGQFPQWLAENAARAV--ELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 + +QL P AAR + E + +D+N GCP V GGGA L L Sbjct: 84 SPRSLQLYTVDPD-TTYAAARMIAGEGLADHIDMNFGCPVPKVTKRGGGAALPFKRRLFG 142 Query: 121 Q-GAKAMREAVPAHLPVSVKVRLGWDSGEKK-FEIADAVQQAGATELVVHGRTKEQGYRA 178 Q A A+R +PV+VK R+G D + + GA + +H RT Q Y Sbjct: 143 QIVAAAVRATEGTDIPVTVKFRIGIDDAHHTHLDAGRIAEAEGAAAVALHARTAAQRYSG 202 Query: 179 EHIDWQAIGDIRQRL-NIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIP 231 DW+ I ++Q + IPV+ NG+I+D A M+ +GCD V+IGRG L P Sbjct: 203 T-ADWEQIARLKQHVRTIPVLGNGDIYDAGDALAMMSTTGCDGVVIGRGCLGRP 255 >UniRef50_A4RM51 Putative uncharacterized protein n=2 Tax=Saccharomyceta RepID=A4RM51_MAGGR Length = 614 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 62/172 (36%), Positives = 87/172 (50%), Gaps = 11/172 (6%) Query: 67 VQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAM 126 VQ P L E AA+ V VDLN GCP GA L +D ELI++ + + Sbjct: 122 VQFCANDPSALLE-AAKHVAPYCDAVDLNLGCPQGIARKGHYGAFLQEDQELIHKLIRQL 180 Query: 127 REAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQ-GYRAEHIDWQA 185 + + +PV+ K+R+ D+ E A V AGA+ L VHGR +EQ G+ DW A Sbjct: 181 HDGL--SIPVTAKIRI-LDTPEATLAYARNVLDAGASILTVHGRRREQKGHLTGVADWSA 237 Query: 186 IGDIRQRLNIP----VIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNL 233 I +R+ N+P + ANG I ++C+ +G DAVM G L+ P L Sbjct: 238 IRHLRE--NLPPETVIFANGNILQRGDLERCLEATGADAVMSAEGNLSDPTL 287 >UniRef50_UPI000180C543 PREDICTED: similar to dihydrouridine synthase 1-like n=2 Tax=Eumetazoa RepID=UPI000180C543 Length = 626 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 85/167 (50%), Gaps = 7/167 (4%) Query: 69 LLGQFPQWLAEN---AARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKA 125 L+ QF AEN A++ VE GVDLN GCP GA L +D +LI + Sbjct: 74 LIVQFCSNSAENFLEASKLVEGLCEGVDLNLGCPQHIAKRGHFGAYLQEDWDLIIEIIST 133 Query: 126 MREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQ-GYRAEHIDWQ 184 ++ + + V+ K+R+ ++ +K + A ++ AG + VHGRT+EQ G W Sbjct: 134 TKQHIG--IGVTAKIRV-FNEIDKTVKYAQMLETAGCDIITVHGRTREQKGPNTGLASWD 190 Query: 185 AIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIP 231 I ++ ++IPV ANG I + +CM +G D VM+ G L P Sbjct: 191 HIKAVKDNVDIPVFANGNIQYYCDIMRCMETTGVDGVMVAEGNLTNP 237 >UniRef50_A6QPA8 DUS4L protein n=2 Tax=Eutheria RepID=A6QPA8_BOVIN Length = 238 Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 62/217 (28%), Positives = 100/217 (46%), Gaps = 12/217 (5%) Query: 4 LLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGT 63 + APM R L+ + D DLC T + D F R + T G Sbjct: 30 ICAPMVRYSKLSFRTLVRKY-DCDLCYTPMIVAAD-------FVRSAKARDSEFTTNQGD 81 Query: 64 LVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGA 123 + L +AAR V + G+D+NCGCP + G GA L+ PEL+ Sbjct: 82 CPLIVQFAANDARLLSDAARIVCPYANGIDINCGCPQRWALAEGYGACLINKPELVRDMV 141 Query: 124 KAMREAVP-AHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHID 182 K +R V VS+K+R+ D + ++ + G + + VHGRT E+ ++ H Sbjct: 142 KQVRNQVENPRFSVSIKIRIH-DDLTRTVDLCRKAEATGVSWITVHGRTVEERHQPVH-- 198 Query: 183 WQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCD 219 ++AI I++ ++IP++ANG+I + A+ +G D Sbjct: 199 YEAIKIIKESMSIPIVANGDIRSLKEAENVWHTTGTD 235 >UniRef50_A7NDQ7 tRNA dihydrouridine synthase n=17 Tax=Francisella RepID=A7NDQ7_FRATF Length = 327 Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 70/255 (27%), Positives = 116/255 (45%), Gaps = 26/255 (10%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 ++ +APM D R ++ + + + TE V + L K F P Sbjct: 7 KICIAPMLDWTDRHYRYMMRLITRHTMLYTEMVTLNAILHGNKEFL--------LKYNPQ 58 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 V +QL G P+ A EL +++N GCPS+ V G +L+ +PEL+ Sbjct: 59 ENPVTLQLGGCVPKDFISCGKLAEELDYNEININVGCPSERVKKGNFGLSLMAEPELVAD 118 Query: 122 GAKAMREAVPAHLPVSVKVRLGW---DSGEKKFEIADAVQQAGATELVVHGR-------T 171 KAM++ + ++P+SVK R+G+ DS E+ + D QAG L +H R + Sbjct: 119 CVKAMKDNL--NIPISVKCRIGYDHNDSYEELYNFVDKQVQAGIDYLCIHARKGWLSGLS 176 Query: 172 KEQGYRAEHIDWQAIGDIRQRL-NIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNI 230 ++ + + + I++ N+ + NG I Q QQ + D+VMIGR A + Sbjct: 177 PKENRTIPELKYDVVYSIKKDFPNLELGINGGITTIQEIQQ--HLKYVDSVMIGREAYHN 234 Query: 231 PNLSR---VVKYNEP 242 P L + + YN+P Sbjct: 235 PMLFKDFDNIFYNQP 249 >UniRef50_B8P5W1 Predicted protein n=1 Tax=Postia placenta Mad-698-R RepID=B8P5W1_POSPM Length = 513 Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 54/168 (32%), Positives = 88/168 (52%), Gaps = 5/168 (2%) Query: 67 VQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAM 126 VQ P+ L ++A + VE VD+N GCP G+ L + +LIY+ + Sbjct: 97 VQFCANSPEQLLKSA-KVVEPYCDAVDVNLGCPQDIARRGHYGSFLQDEWDLIYELINTL 155 Query: 127 REAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQ-GYRAEHIDWQA 185 + +PV+ K R+ + + EK E A +++AGA L HGR +EQ G+ DW+ Sbjct: 156 HRNL--SIPVTAKFRV-FPTVEKTVEYAKMLERAGAQILTCHGRLREQRGHNTGLADWEK 212 Query: 186 IGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNL 233 I +++ ++IPV ANG + ++C+A +G DA+M G L P + Sbjct: 213 IRAVKEAVSIPVFANGNVLFHSDIERCLAATGADAIMSAEGNLYNPAI 260 >UniRef50_A8QBG9 PP3111 protein, putative n=1 Tax=Brugia malayi RepID=A8QBG9_BRUMA Length = 513 Score = 84.3 bits (207), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 61/168 (36%), Positives = 84/168 (50%), Gaps = 5/168 (2%) Query: 67 VQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAM 126 VQ P L NA + VE GVDLN GCP GA L +D +LI + + Sbjct: 119 VQFCANDPVILL-NACQLVESFCDGVDLNLGCPQLIAKRGHYGAYLQEDLKLICEMITLL 177 Query: 127 REAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQ-GYRAEHIDWQA 185 + LP+S K+R+ D E A A+ +AGA L VHGRT+EQ G DW A Sbjct: 178 HSH--SRLPLSCKIRILQDINET-VAYARALVKAGACMLTVHGRTREQRGPNTGLADWYA 234 Query: 186 IGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNL 233 + + +++PV+ANG I +C+ I+G A+M G L+ P L Sbjct: 235 MRAVVSAVDVPVLANGNIQLPGDVDRCLEITGASAIMSAEGILSNPYL 282 >UniRef50_B1GZV7 Putative tRNA-dihydrouridine synthase n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1GZV7_UNCTG Length = 320 Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 82/298 (27%), Positives = 134/298 (44%), Gaps = 23/298 (7%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 ++LAPM G+ D +R L + L T +L + R + + +T Sbjct: 15 IILAPMAGITDLPLRRL-AKSGGAGLVYT-------GMLSARALVRSDEKTEKLLKTTED 66 Query: 63 TL-VRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 V Q+ G +AE A G+ +D+N GCP K V +G GA LL D +L+ + Sbjct: 67 ERPVAAQIFGSAAHIMAEAAKIVRNSGADIIDVNLGCPVKKVAKAGAGAKLLADEKLVSE 126 Query: 122 GAKAMREAVPAHLPVSVKVRLG-WDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 +++ ++V +PV+VK+R G EI G + VH R QG+ Sbjct: 127 ILESVVKSV--DVPVTVKIRTGLLPEHNAATEIIKVAYNCGIKMVAVHARPASQGHSG-F 183 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGAL-NIPNLSRVVKY 239 D + IPVIANG + D ++A + + C +MIGRGAL N R+ + Sbjct: 184 PDLKLFAASCAGAKIPVIANGGVVDEKTAADFLRVPNCAGIMIGRGALGNYSIFKRLEAF 243 Query: 240 --NEPRMPWP---EVVALLQKYTR--LEKQGDTGLYHVARIKQWLSYLRKEYDEATEL 290 + ++P P E V L+K+ + +E G+ + V +K+ Y K+ A ++ Sbjct: 244 FSSGKKLPLPSKTEKVEWLKKHVQYSVEYYGEKKGFVV--MKKVFHYYVKDLPNAAKI 299 >UniRef50_Q7RX85 Putative uncharacterized protein n=1 Tax=Neurospora crassa RepID=Q7RX85_NEUCR Length = 576 Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 58/172 (33%), Positives = 90/172 (52%), Gaps = 11/172 (6%) Query: 67 VQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAM 126 VQ P +L +AA+ V VDLN GCP G+ L ++ ELI++ + Sbjct: 86 VQFCANDPAYLL-SAAKLVAPYCDAVDLNLGCPQGIAKRGQYGSFLQENQELIFELINTL 144 Query: 127 REAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQ-GYRAEHIDWQA 185 + + +PV+ K+R+ D+ E + A V +AGA+ L VHGR +EQ G++ DW+ Sbjct: 145 HKEL--DIPVTAKIRI-LDTKEATLKYAQNVLRAGASILTVHGRRREQKGHQTGLADWEY 201 Query: 186 IGDIRQRLNIP----VIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNL 233 I +R+ N+P + ANG I ++C+A +G D VM G L+ P L Sbjct: 202 IRYLRE--NLPKETVIFANGNILQHADLEKCLAATGADGVMSAEGNLSDPGL 251 >UniRef50_UPI00006A5AE6 PREDICTED: similar to PP3111 protein n=1 Tax=Ciona intestinalis RepID=UPI00006A5AE6 Length = 474 Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 58/168 (34%), Positives = 84/168 (50%), Gaps = 5/168 (2%) Query: 67 VQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAM 126 VQ P L ++A A + VD+N GCP GA L ++ EL+ + KA Sbjct: 78 VQFCANDPDILTKSALLAQDHCD-AVDINLGCPQTIAKRGNYGAFLGENWELVTKLIKAC 136 Query: 127 REAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKE-QGYRAEHIDWQA 185 E + +PV+ K+R+ D EK + A +++AG L VHGRTKE +G W+ Sbjct: 137 HEKL--SVPVTCKIRIFTDV-EKTVQYAKMIERAGCQLLTVHGRTKEMKGPMTGLASWEH 193 Query: 186 IGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNL 233 I ++ + IPV ANG I +C+ +G D VMI G L+ P L Sbjct: 194 IKAVKDAVKIPVFANGNIQYKADVDRCINQTGVDGVMIAEGNLHDPCL 241 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P33371 tRNA-dihydrouridine synthase C n=160 Tax=Gammapr... 459 e-128 UniRef50_Q9CJW1 tRNA-dihydrouridine synthase C n=7 Tax=Gammaprot... 383 e-105 UniRef50_Q87N01 tRNA-dihydrouridine synthase C n=54 Tax=Gammapro... 379 e-104 UniRef50_Q9KT00 tRNA-dihydrouridine synthase C n=75 Tax=Gammapro... 371 e-101 UniRef50_Q1ZGI3 NifR3/Smm1 family protein n=1 Tax=Psychromonas s... 357 2e-97 UniRef50_B0SC53 tRNA-dihydrouridine synthase n=2 Tax=Leptospira ... 354 2e-96 UniRef50_B3PD21 Dihydrouridine synthase family protein n=4 Tax=P... 343 4e-93 UniRef50_Q88LF2 tRNA-dihydrouridine synthase C n=38 Tax=cellular... 334 2e-90 UniRef50_C5TM05 tRNA-dihydrouridine synthase C n=5 Tax=Neisseria... 334 2e-90 UniRef50_Q9JUP6 tRNA-dihydrouridine synthase C n=23 Tax=Neisseri... 333 6e-90 UniRef50_Q47C15 Dihydrouridine synthase, DuS n=1 Tax=Dechloromon... 330 5e-89 UniRef50_C9XSF8 tRNA-dihydrouridine synthase n=24 Tax=Clostridia... 327 2e-88 UniRef50_Q1N033 Putative uncharacterized protein n=1 Tax=Bermane... 327 4e-88 UniRef50_A3JG66 Putative uncharacterized protein n=3 Tax=Gammapr... 325 1e-87 UniRef50_Q884C6 tRNA-dihydrouridine synthase C n=13 Tax=Proteoba... 324 3e-87 UniRef50_Q21L63 Dihydrouridine synthase, DuS n=1 Tax=Saccharopha... 323 5e-87 UniRef50_B3QWF2 TIM-barrel protein, nifR3 family n=26 Tax=Bacter... 320 4e-86 UniRef50_Q127F8 Dihydrouridine synthase, DuS n=7 Tax=Proteobacte... 319 7e-86 UniRef50_A4BCJ5 NifR3/Smm1 family protein n=1 Tax=Reinekea bland... 319 8e-86 UniRef50_B9MMW4 TIM-barrel protein, nifR3 family n=3 Tax=Clostri... 318 2e-85 UniRef50_D2RLJ7 TIM-barrel protein, nifR3 family n=1 Tax=Acidami... 317 2e-85 UniRef50_D0J1P6 Dihydrouridine synthase, DuS n=7 Tax=cellular or... 317 4e-85 UniRef50_C4Z9L8 tRNA-dihydrouridine synthase n=26 Tax=Firmicutes... 314 3e-84 UniRef50_A9KHE5 TIM-barrel protein, nifR3 family n=2 Tax=Clostri... 313 4e-84 UniRef50_C0WDP2 Putative uncharacterized protein n=1 Tax=Acidami... 313 6e-84 UniRef50_Q4FQ57 Possible tRNA-dihydrouridine synthase n=24 Tax=G... 310 3e-83 UniRef50_Q55724 Probable tRNA-dihydrouridine synthase 1 n=34 Tax... 309 8e-83 UniRef50_A4AAB0 tRNA-dihydrouridine synthase C n=6 Tax=Gammaprot... 307 2e-82 UniRef50_B8GCQ5 TIM-barrel protein, nifR3 family n=6 Tax=Chlorof... 307 4e-82 UniRef50_D1BLD4 TIM-barrel protein, nifR3 family n=12 Tax=cellul... 305 1e-81 UniRef50_C8W3U6 TIM-barrel protein, nifR3 family n=8 Tax=Clostri... 304 3e-81 UniRef50_C0GJW0 TIM-barrel protein, nifR3 family n=1 Tax=Dethiob... 303 6e-81 UniRef50_Q2LR94 TRNA-dihydrouridine synthase n=2 Tax=Deltaproteo... 303 7e-81 UniRef50_Q3A324 Dihydrouridine synthase n=10 Tax=Desulfuromonada... 302 9e-81 UniRef50_C1FNC8 Dihydrouridine synthase n=35 Tax=cellular organi... 302 9e-81 UniRef50_C6JNK3 Dihydrouridine-tRNA ligase n=4 Tax=Fusobacterium... 301 2e-80 UniRef50_Q1IVR5 Dihydrouridine synthase TIM-barrel protein nifR3... 300 3e-80 UniRef50_B2A3T5 TIM-barrel protein, nifR3 family n=1 Tax=Natrana... 300 6e-80 UniRef50_B0VH62 Dihydrouridine synthase family protein n=1 Tax=C... 299 8e-80 UniRef50_A6W1E8 Dihydrouridine synthase DuS n=1 Tax=Marinomonas ... 299 1e-79 UniRef50_B0S217 Nitrogen regulation protein n=3 Tax=Clostridiale... 296 5e-79 UniRef50_UPI0001BC5FF0 nitrogen regulation protein NIFR3 n=1 Tax... 296 7e-79 UniRef50_A0Q6L0 TRNA-dihydrouridine synthase n=19 Tax=Francisell... 295 1e-78 UniRef50_A6DPY9 Putative uncharacterized protein n=1 Tax=Lentisp... 295 2e-78 UniRef50_A9NE09 tRNA-dihydrouridine synthase n=2 Tax=Mollicutes ... 295 2e-78 UniRef50_B0TBQ2 Dihydrouridine synthase tim-barrel nifr3 family ... 292 1e-77 UniRef50_C1F4Z7 Putative tRNA-dihydrouridine synthase n=1 Tax=Ac... 290 3e-77 UniRef50_C7RGQ7 TIM-barrel protein, nifR3 family n=4 Tax=Anaeroc... 290 6e-77 UniRef50_C7PIH0 TIM-barrel protein, nifR3 family n=7 Tax=Bactero... 290 6e-77 UniRef50_C2KYD0 Dihydrouridine synthase n=4 Tax=Bacteria RepID=C... 289 6e-77 UniRef50_Q090Q9 TRNA-dihydrouridine synthase B n=2 Tax=Cystobact... 289 7e-77 UniRef50_C1A3V7 Putative tRNA-dihydrouridine synthase n=1 Tax=Ge... 288 2e-76 UniRef50_Q1RH84 Probable tRNA-dihydrouridine synthase n=59 Tax=A... 287 3e-76 UniRef50_D0LJX3 TIM-barrel protein, nifR3 family n=1 Tax=Haliang... 287 3e-76 UniRef50_P37567 Probable tRNA-dihydrouridine synthase 1 n=19 Tax... 287 4e-76 UniRef50_A0LJ96 Putative TIM-barrel protein, nifR3 family n=1 Ta... 286 6e-76 UniRef50_Q6F288 TRNA dihydrouridine synthetase n=3 Tax=Mollicute... 286 7e-76 UniRef50_Q1QZQ6 Dihydrouridine synthase, DuS n=1 Tax=Chromohalob... 285 1e-75 UniRef50_Q1NXZ7 Dihydrouridine synthase TIM-barrel protein nifR3... 285 2e-75 UniRef50_C9KMX2 tRNA-dihydrouridine synthase n=3 Tax=Veillonella... 285 2e-75 UniRef50_B2ULM0 TIM-barrel protein, nifR3 family n=3 Tax=Verruco... 285 2e-75 UniRef50_C8WHM7 TIM-barrel protein, nifR3 family n=2 Tax=Corioba... 284 2e-75 UniRef50_D2NNX0 tRNA-dihydrouridine synthase n=3 Tax=Actinobacte... 284 4e-75 UniRef50_Q9KV66 tRNA-dihydrouridine synthase B n=56 Tax=Proteoba... 283 5e-75 UniRef50_Q6MRF1 Transcription regulator homolog yacF n=1 Tax=Bde... 283 7e-75 UniRef50_P44965 tRNA-dihydrouridine synthase B n=20 Tax=Pasteure... 282 1e-74 UniRef50_Q1Q3Q8 Strongly similar to tRNA-dihydrouridine synthase... 282 1e-74 UniRef50_Q31II6 Dihydrouridine synthase n=1 Tax=Thiomicrospira c... 281 2e-74 UniRef50_B7GFK6 tRNA-dihydrouridine synthase n=211 Tax=Bacteria ... 281 2e-74 UniRef50_C1ZDL9 Putative TIM-barrel protein, nifR3 family n=1 Ta... 281 2e-74 UniRef50_A6CBK4 Predicted TIM-barrel enzyme, possibly dehydrogen... 281 2e-74 UniRef50_A8ZYE4 Putative TIM-barrel protein, nifR3 family n=1 Ta... 281 3e-74 UniRef50_D2RA64 TIM-barrel protein, nifR3 family n=5 Tax=Actinob... 280 3e-74 UniRef50_D1VTQ2 Probable tRNA-dihydrouridine synthase n=1 Tax=Pe... 280 4e-74 UniRef50_D0L1E3 TIM-barrel protein, nifR3 family n=1 Tax=Halothi... 280 4e-74 UniRef50_B8FGI4 TIM-barrel protein, nifR3 family n=1 Tax=Desulfa... 280 4e-74 UniRef50_D2U2K4 tRNA-dihydrouridine synthase B n=1 Tax=Arsenopho... 280 5e-74 UniRef50_D1NSS9 Putative tRNA-dihydrouridine synthase n=1 Tax=Bi... 279 9e-74 UniRef50_Q2RM54 Dihydrouridine synthase TIM-barrel protein nifR3... 279 1e-73 UniRef50_A0M6M9 TRNA-dihydrouridine synthase n=16 Tax=Bacteroide... 278 2e-73 UniRef50_B6W908 Putative uncharacterized protein n=1 Tax=Anaeroc... 277 4e-73 UniRef50_B8DSX5 Possible NifR3-like protein n=15 Tax=Bifidobacte... 277 5e-73 UniRef50_B1ZWU6 TIM-barrel protein, nifR3 family n=6 Tax=Verruco... 276 8e-73 UniRef50_Q3AZ67 Dihydrouridine synthase TIM-barrel protein nifR3... 276 8e-73 UniRef50_Q6SFW7 NifR3/Smm1 family protein n=1 Tax=uncultured mar... 276 8e-73 UniRef50_Q2RTR9 Dihydrouridine synthase TIM-barrel protein nifR3... 275 1e-72 UniRef50_Q6AJZ5 tRNA-dihydrouridine synthase n=1 Tax=Desulfotale... 275 1e-72 UniRef50_Q9RDC6 Putative uncharacterized protein SCO2497 n=4 Tax... 275 2e-72 UniRef50_A7H1K2 tRNA-dihydrouridine synthase B n=14 Tax=Campylob... 274 2e-72 UniRef50_C8X244 Dihydrouridine synthase DuS n=1 Tax=Desulfohalob... 274 2e-72 UniRef50_Q88DK5 tRNA-dihydrouridine synthase B n=460 Tax=Proteob... 274 3e-72 UniRef50_D1AWB1 Dihydrouridine synthase DuS n=12 Tax=Fusobacteri... 274 4e-72 UniRef50_B1C9Q3 Putative uncharacterized protein n=1 Tax=Anaerof... 273 6e-72 UniRef50_A9A4W7 Putative TIM-barrel protein, nifR3 family n=1 Ta... 273 7e-72 UniRef50_A6NW05 Putative uncharacterized protein n=1 Tax=Bactero... 272 9e-72 UniRef50_D0U4P6 tRNA-dihydrouridine synthase n=2 Tax=uncultured ... 272 1e-71 UniRef50_Q8PX79 NifR3-like protein n=3 Tax=Methanosarcina RepID=... 272 1e-71 UniRef50_A6GHV6 Dihydrouridine synthase family protein n=1 Tax=P... 272 1e-71 UniRef50_C0W327 Dihydrouridine synthase n=2 Tax=Actinomyces RepI... 272 2e-71 UniRef50_Q0BSS6 tRNA-dihydrouridine synthase n=15 Tax=Alphaprote... 271 2e-71 UniRef50_C0QKE4 Dhs2 n=1 Tax=Desulfobacterium autotrophicum HRM2... 271 2e-71 UniRef50_Q2RZL4 NifR3 family enzyme n=2 Tax=Rhodothermaceae RepI... 271 3e-71 UniRef50_B9JF02 tRNA-dihydrouridine synthase protein n=12 Tax=Al... 270 6e-71 UniRef50_Q0F181 Dihydrouridine synthase TIM-barrel protein nifR3... 269 7e-71 UniRef50_D1R8P9 Putative uncharacterized protein n=1 Tax=Parachl... 269 9e-71 UniRef50_B9NQS6 NifR3 family protein n=3 Tax=Rhodobacteraceae Re... 269 9e-71 UniRef50_C8W6Y9 TIM-barrel protein, nifR3 family n=1 Tax=Atopobi... 269 1e-70 UniRef50_A1VHK2 Dihydrouridine synthase, DuS n=10 Tax=Desulfovib... 269 1e-70 UniRef50_Q5M689 Possible transcriptional regulator n=25 Tax=Stre... 268 2e-70 UniRef50_C1SJZ7 tRNA-dihydrouridine synthase n=1 Tax=Denitrovibr... 268 2e-70 UniRef50_B9JW92 Nitrogen regulation protein n=4 Tax=Rhizobiales ... 268 2e-70 UniRef50_D0WEP2 tRNA-dihydrouridine synthase B n=2 Tax=Slackia R... 268 2e-70 UniRef50_A6BZR9 Predicted TIM-barrel enzyme, possibly dehydrogen... 267 3e-70 UniRef50_A6DCX2 tRNA-dihydrouridine synthase B n=1 Tax=Caminibac... 267 3e-70 UniRef50_A5FL15 tRNA-dihydrouridine synthase B-like protein n=14... 267 3e-70 UniRef50_C9LMP9 tRNA-dihydrouridine synthase n=1 Tax=Dialister i... 267 5e-70 UniRef50_C5WE57 tRNA-dihydrouridine synthase n=42 Tax=Streptococ... 267 5e-70 UniRef50_UPI00016C52C4 dihydrouridine synthase DuS n=1 Tax=Gemma... 266 6e-70 UniRef50_C6C170 Dihydrouridine synthase DuS n=1 Tax=Desulfovibri... 266 6e-70 UniRef50_Q14SX5 Putative dihydrouridine synthase n=6 Tax=Clostri... 266 7e-70 UniRef50_B9L781 tRNA-dihydrouridine synthase B n=1 Tax=Nautilia ... 266 8e-70 UniRef50_B9XLX7 Dihydrouridine synthase DuS n=3 Tax=Verrucomicro... 265 1e-69 UniRef50_Q2IG49 Dihydrouridine synthase TIM-barrel protein nifR3... 265 1e-69 UniRef50_C7LQM9 Dihydrouridine synthase DuS n=2 Tax=Desulfovibri... 265 2e-69 UniRef50_P41504 Probable tRNA-dihydrouridine synthase n=93 Tax=A... 265 2e-69 UniRef50_C7GZ00 tRNA-dihydrouridine synthase n=1 Tax=Eubacterium... 265 2e-69 UniRef50_A7S213 Predicted protein n=1 Tax=Nematostella vectensis... 264 2e-69 UniRef50_C7H613 tRNA-dihydrouridine synthase n=3 Tax=Ruminococca... 264 2e-69 UniRef50_D1AZV6 Dihydrouridine synthase DuS n=7 Tax=Campylobacte... 264 4e-69 UniRef50_UPI0000D52F94 Dihydrouridine synthase TIM-barrel protei... 262 9e-69 UniRef50_C3MBL4 tRNA-dihydrouridine synthase n=1 Tax=Rhizobium s... 262 1e-68 UniRef50_B6YQB2 tRNA-dihydrouridine synthase n=36 Tax=Bacteria R... 261 2e-68 UniRef50_C6XJQ7 Dihydrouridine synthase DuS n=2 Tax=Hyphomonadac... 261 3e-68 UniRef50_A0Z0J5 TRNA-dihydrouridine synthase B n=2 Tax=unclassif... 261 3e-68 UniRef50_Q5FMA1 Transcriptional regulator n=14 Tax=Firmicutes Re... 260 4e-68 UniRef50_A9BIR6 Dihydrouridine synthase DuS n=1 Tax=Petrotoga mo... 260 4e-68 UniRef50_B9ZKT6 TIM-barrel protein, nifR3 family n=1 Tax=Thioalk... 260 6e-68 UniRef50_Q30WR3 Dihydrouridine synthase family protein n=3 Tax=D... 259 8e-68 UniRef50_Q6A959 TIM-barrel enzyme, NifR3 family n=2 Tax=Propioni... 259 8e-68 UniRef50_A7I0T0 NifR3 family protein n=9 Tax=Epsilonproteobacter... 259 9e-68 UniRef50_Q5CSA9 Dus1p, tRNA dihydrouridine synthase (Fragment) n... 258 2e-67 UniRef50_UPI000194DF67 PREDICTED: dihydrouridine synthase 3-like... 258 2e-67 UniRef50_A9GW95 Dihydrouridine synthase TIM-barrel protein nifR3... 258 2e-67 UniRef50_C9RMP3 Dihydrouridine synthase DuS n=1 Tax=Fibrobacter ... 257 3e-67 UniRef50_C1ZB06 tRNA-dihydrouridine synthase n=1 Tax=Planctomyce... 257 3e-67 UniRef50_UPI000058804E PREDICTED: similar to MGC53781 protein n=... 257 4e-67 UniRef50_D0NNQ3 tRNA-dihydrouridine synthase, putative n=1 Tax=P... 257 4e-67 UniRef50_UPI0001BCCF0E nifR3 family TIM-barrel protein n=1 Tax=A... 257 5e-67 UniRef50_O67533 Probable tRNA-dihydrouridine synthase n=1 Tax=Aq... 257 5e-67 UniRef50_D1U4K9 Dihydrouridine synthase DuS n=1 Tax=Desulfovibri... 256 8e-67 UniRef50_A8N483 Putative uncharacterized protein n=2 Tax=Agarica... 256 9e-67 UniRef50_Q9ZLB6 Probable tRNA-dihydrouridine synthase n=23 Tax=E... 255 2e-66 UniRef50_UPI000186DAF4 tRNA-dihydrouridine synthase, putative n=... 254 3e-66 UniRef50_C2D6C5 Possible tRNA-dihydrouridine synthase n=1 Tax=At... 254 3e-66 UniRef50_Q12U52 tRNA-dihydrouridine synthase n=2 Tax=Archaea Rep... 253 4e-66 UniRef50_Q54XQ6 tRNA-dihydrouridine synthase 1-like protein n=1 ... 253 5e-66 UniRef50_C0QXB6 Dihydrouridine synthase-like (DUS-like) FMN-bind... 253 6e-66 UniRef50_Q7ZWS1 tRNA-dihydrouridine synthase 3-like n=3 Tax=Xeno... 253 6e-66 UniRef50_Q72EB7 Dihydrouridine synthase family protein n=4 Tax=D... 253 8e-66 UniRef50_C5CI99 Dihydrouridine synthase DuS n=1 Tax=Kosmotoga ol... 252 8e-66 UniRef50_A5EVV4 Dihydrouridine synthase n=2 Tax=Cardiobacteriace... 252 1e-65 UniRef50_B1GZV7 Putative tRNA-dihydrouridine synthase n=1 Tax=un... 252 1e-65 UniRef50_Q6AKJ6 Putative uncharacterized protein n=1 Tax=Desulfo... 252 1e-65 UniRef50_C4QMR1 tRNA-dihydrouridine synthase, putative n=1 Tax=S... 251 2e-65 UniRef50_A7BE39 Putative uncharacterized protein n=1 Tax=Actinom... 251 2e-65 UniRef50_B8FH09 Dihydrouridine synthase DuS n=1 Tax=Desulfatibac... 251 3e-65 UniRef50_B3RKU4 Putative uncharacterized protein n=2 Tax=Metazoa... 250 5e-65 UniRef50_Q1J2A4 Dihydrouridine synthase, DuS n=3 Tax=Deinococcus... 250 5e-65 UniRef50_Q9VIS4 CG10463 n=12 Tax=Drosophila RepID=Q9VIS4_DROME 249 9e-65 UniRef50_Q256J2 Dehydrogenases n=13 Tax=Chlamydiaceae RepID=Q256... 249 1e-64 UniRef50_O53835 Probable tRNA-dihydrouridine synthase n=107 Tax=... 249 1e-64 UniRef50_B0UHM8 TIM-barrel protein, nifR3 family n=6 Tax=Rhizobi... 248 1e-64 UniRef50_Q54CU9 tRNA-dihydrouridine synthase 3-like n=1 Tax=Dict... 248 1e-64 UniRef50_D2R6Z1 TIM-barrel protein, nifR3 family n=3 Tax=Plancto... 247 3e-64 UniRef50_Q5ZRM0 Nitrogen regulation protein n=6 Tax=Legionella R... 247 3e-64 UniRef50_Q96G46 tRNA-dihydrouridine synthase 3-like n=17 Tax=Coe... 247 4e-64 UniRef50_Q7X346 Putative uncharacterized protein n=1 Tax=uncultu... 247 5e-64 UniRef50_B5X496 tRNA-dihydrouridine synthase 3-like n=3 Tax=Euka... 246 1e-63 UniRef50_B8DIS9 Dihydrouridine synthase DuS n=2 Tax=Desulfovibri... 245 1e-63 UniRef50_Q6P1R4 tRNA-dihydrouridine synthase 1-like n=12 Tax=Eut... 245 1e-63 UniRef50_Q9VPM1 CG3645, isoform A n=9 Tax=Diptera RepID=Q9VPM1_D... 245 2e-63 UniRef50_C4VA23 Putative uncharacterized protein n=1 Tax=Nosema ... 245 2e-63 UniRef50_P53759 tRNA-dihydrouridine synthase 1 n=19 Tax=Ascomyco... 244 2e-63 UniRef50_Q91XI1 tRNA-dihydrouridine synthase 3-like n=12 Tax=Cho... 244 2e-63 UniRef50_A8NZY7 tRNA-dihydrouridine synthase 3 n=2 Tax=Agaricale... 243 4e-63 UniRef50_A7HK00 Dihydrouridine synthase DuS n=8 Tax=Thermotogace... 243 4e-63 UniRef50_B8HFM3 TIM-barrel protein, nifR3 family n=4 Tax=Actinom... 243 5e-63 UniRef50_Q3MB47 Dihydrouridine synthase, DuS n=6 Tax=Bacteria Re... 243 5e-63 UniRef50_C1E1T8 Predicted protein n=1 Tax=Micromonas sp. RCC299 ... 243 8e-63 UniRef50_UPI00017B0A55 UPI00017B0A55 related cluster n=1 Tax=Tet... 242 9e-63 UniRef50_A4EC62 Putative uncharacterized protein n=3 Tax=Collins... 242 1e-62 UniRef50_Q010A0 tRNA-dihydrouridine synthase (ISS) n=2 Tax=Mamie... 242 1e-62 UniRef50_B1ZZ77 Dihydrouridine synthase DuS n=2 Tax=Opitutaceae ... 242 1e-62 UniRef50_C1E909 tRNA-dihydrouridine synthase (Fragment) n=2 Tax=... 242 1e-62 UniRef50_D1AII6 Dihydrouridine synthase DuS n=1 Tax=Sebaldella t... 242 2e-62 UniRef50_Q7PVV7 AGAP009171-PA (Fragment) n=3 Tax=Endopterygota R... 242 2e-62 UniRef50_B0S913 tRNA-dihydrouridine synthase n=7 Tax=Leptospira ... 242 2e-62 UniRef50_Q5KC68 tRNA-dihydrouridine synthase 3 n=2 Tax=Filobasid... 241 2e-62 UniRef50_A3VWV8 TRNA-dihydrouridine synthase, putative n=4 Tax=R... 241 2e-62 UniRef50_A0EG06 Chromosome undetermined scaffold_94, whole genom... 241 2e-62 UniRef50_UPI00006A5AE6 PREDICTED: similar to PP3111 protein n=1 ... 241 3e-62 UniRef50_A8F480 Dihydrouridine synthase DuS n=1 Tax=Thermotoga l... 241 3e-62 UniRef50_Q17M24 tRNA-dihydrouridine synthase n=2 Tax=Diptera Rep... 240 3e-62 UniRef50_UPI000180C543 PREDICTED: similar to dihydrouridine synt... 240 4e-62 UniRef50_C5F231 Putative uncharacterized protein n=2 Tax=Helicob... 240 5e-62 UniRef50_A4RQU5 Predicted protein n=2 Tax=Ostreococcus RepID=A4R... 240 6e-62 UniRef50_C1ZGV0 tRNA-dihydrouridine synthase n=1 Tax=Planctomyce... 240 7e-62 UniRef50_O95620 tRNA-dihydrouridine synthase 4-like n=40 Tax=Met... 238 2e-61 UniRef50_Q54ES7 tRNA-dihydrouridine synthase 4-like protein n=1 ... 238 2e-61 UniRef50_B2V534 Dihydrouridine synthase family protein n=29 Tax=... 237 4e-61 UniRef50_UPI0001792282 PREDICTED: similar to tRNA-dihydrouridine... 237 6e-61 UniRef50_C5DS92 ZYRO0B14872p n=1 Tax=Zygosaccharomyces rouxii Re... 236 6e-61 UniRef50_Q4DCG2 Putative uncharacterized protein n=2 Tax=Trypano... 236 6e-61 UniRef50_UPI0001C3129C dihydrouridine synthase DuS n=1 Tax=Conex... 236 8e-61 UniRef50_Q8SUV4 Putative uncharacterized protein ECU07_1610 n=1 ... 236 8e-61 UniRef50_A6DU09 Dihydrouridine synthase family protein n=1 Tax=L... 235 1e-60 UniRef50_B7PPV8 tRNA-dihydrouridine synthase, putative n=1 Tax=I... 235 2e-60 UniRef50_B8GW86 tRNA-dihydrouridine synthase n=7 Tax=Alphaproteo... 234 3e-60 UniRef50_Q4P1U2 tRNA-dihydrouridine synthase 3 n=4 Tax=Eukaryota... 234 3e-60 UniRef50_C8QWB5 Dihydrouridine synthase DuS n=1 Tax=Desulfurivib... 234 4e-60 UniRef50_B7APY3 Putative uncharacterized protein n=1 Tax=Bactero... 233 5e-60 UniRef50_Q582L4 TRNA-dihydrouridine synthase 3, putative n=5 Tax... 233 5e-60 UniRef50_A4E892 Putative uncharacterized protein n=4 Tax=Collins... 233 5e-60 UniRef50_UPI0001BC2F14 dihydrouridine synthase DuS n=1 Tax=Butyr... 233 9e-60 UniRef50_B5RQ77 Histidine phosphokinase/phophatase, putative n=4... 232 9e-60 UniRef50_B1MZ90 tRNA-dihydrouridine synthase n=39 Tax=Bacteria R... 232 1e-59 UniRef50_A5Z3X7 Putative uncharacterized protein n=2 Tax=Clostri... 232 2e-59 UniRef50_A4S141 Predicted protein (Fragment) n=1 Tax=Ostreococcu... 232 2e-59 UniRef50_Q4PG83 Putative uncharacterized protein n=2 Tax=Ustilag... 232 2e-59 UniRef50_C8X0F5 Dihydrouridine synthase DuS n=1 Tax=Desulfohalob... 231 2e-59 UniRef50_B1XI00 Dihydrouridine synthase A n=8 Tax=Chroococcales ... 231 3e-59 UniRef50_A8QBG9 PP3111 protein, putative n=1 Tax=Brugia malayi R... 230 3e-59 UniRef50_Q9FH91 Gb|AAF51525.1 n=7 Tax=Viridiplantae RepID=Q9FH91... 230 4e-59 UniRef50_Q2SJJ8 TRNA-dihydrouridine synthase n=7 Tax=Gammaproteo... 230 4e-59 UniRef50_B9HRE5 Predicted protein (Fragment) n=11 Tax=Eukaryota ... 230 4e-59 UniRef50_Q0STG2 Dihydrouridine synthase family protein n=27 Tax=... 230 6e-59 UniRef50_A1AT39 Dihydrouridine synthase, DuS n=7 Tax=Desulfuromo... 230 7e-59 UniRef50_B7G230 Predicted protein (Fragment) n=1 Tax=Phaeodactyl... 229 9e-59 UniRef50_C1MXD1 Dihydrouridine synthase n=1 Tax=Micromonas pusil... 228 2e-58 UniRef50_B6BT49 tRNA-dihydrouridine synthase A n=4 Tax=SAR11 clu... 227 3e-58 UniRef50_C2KW54 Dihydrouridine synthase, DuS n=1 Tax=Oribacteriu... 227 3e-58 UniRef50_UPI000179183B PREDICTED: similar to tRNA-dihydrouridine... 227 4e-58 UniRef50_B0GA01 Putative uncharacterized protein n=2 Tax=Clostri... 227 5e-58 UniRef50_B1LWM8 TIM-barrel protein, nifR3 family n=1 Tax=Methylo... 227 5e-58 UniRef50_Q5KP54 Putative uncharacterized protein n=1 Tax=Filobas... 227 5e-58 UniRef50_A9KG09 NIFR3-like protein n=6 Tax=Coxiella burnetii Rep... 226 8e-58 UniRef50_D2VPP8 Predicted protein n=1 Tax=Naegleria gruberi RepI... 226 8e-58 UniRef50_A7NDQ7 tRNA dihydrouridine synthase n=17 Tax=Francisell... 226 1e-57 UniRef50_B0EC90 tRNA-dihydrouridine synthase, putative n=2 Tax=E... 225 1e-57 UniRef50_B9M3C8 Dihydrouridine synthase DuS n=2 Tax=Desulfuromon... 225 1e-57 Sequences not found previously or not previously below threshold: >UniRef50_P33371 tRNA-dihydrouridine synthase C n=160 Tax=Gammaproteobacteria RepID=DUSC_ECOLI Length = 315 Score = 459 bits (1182), Expect = e-128, Method: Composition-based stats. Identities = 315/315 (100%), Positives = 315/315 (100%) Query: 1 MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTP 60 MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTP Sbjct: 1 MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTP 60 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY Sbjct: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH Sbjct: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN Sbjct: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 Query: 241 EPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNNS 300 EPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNNS Sbjct: 241 EPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNNS 300 Query: 301 PDIARAIQAIDIEKL 315 PDIARAIQAIDIEKL Sbjct: 301 PDIARAIQAIDIEKL 315 >UniRef50_Q9CJW1 tRNA-dihydrouridine synthase C n=7 Tax=Gammaproteobacteria RepID=DUSC_PASMU Length = 312 Score = 383 bits (984), Expect = e-105, Method: Composition-based stats. Identities = 210/310 (67%), Positives = 247/310 (79%) Query: 1 MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTP 60 MRV+LAPM+GVLD VR+LLT+VN YDLC++EFVRVVDQLLP KVF+R+CPEL T Sbjct: 1 MRVILAPMQGVLDPFVRQLLTQVNQYDLCVSEFVRVVDQLLPTKVFYRLCPELYQQGLTA 60 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 SGT VRVQLLGQ PQWLAENA RA+ELGS G+DLNCGCPSKTVNGS GGA+LLK PELIY Sbjct: 61 SGTPVRVQLLGQHPQWLAENAQRAIELGSHGIDLNCGCPSKTVNGSNGGASLLKQPELIY 120 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 KA+R AVP LPVSVKVRLGWD+ E+ FEIADAVQQ GATE+ +HGRTK GYRA+ Sbjct: 121 HATKALRAAVPKALPVSVKVRLGWDNSEQAFEIADAVQQGGATEITIHGRTKMDGYRADR 180 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 I+W I D+RQRL+IPVIANGEIWDWQS Q C+A +GC +MIGRGALNIPNLS+VVK+N Sbjct: 181 INWAKINDVRQRLSIPVIANGEIWDWQSGQACLAETGCQDLMIGRGALNIPNLSQVVKFN 240 Query: 241 EPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNNS 300 + +MPW EV+ LL +Y E Q DTG YHVARIKQWL YL+K Y +A LFQ ++ ++ Sbjct: 241 QAKMPWAEVLILLHQYAHTENQFDTGFYHVARIKQWLGYLKKAYPQADALFQLIKTCHDG 300 Query: 301 PDIARAIQAI 310 + I + Sbjct: 301 QALRMKIDGV 310 >UniRef50_Q87N01 tRNA-dihydrouridine synthase C n=54 Tax=Gammaproteobacteria RepID=DUSC_VIBPA Length = 322 Score = 379 bits (974), Expect = e-104, Method: Composition-based stats. Identities = 179/309 (57%), Positives = 230/309 (74%) Query: 1 MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTP 60 MRV+L PMEGVLD L+R++LTE+NDYDLC+TEFVRV+DQ+LP VFHR+CPEL S+T Sbjct: 1 MRVVLGPMEGVLDHLMRQILTEINDYDLCVTEFVRVIDQVLPDHVFHRLCPELMQGSQTT 60 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 SG V VQLLGQ P W+AENA RA ELG+ G+DLN GCP+K VN S GGA LL+ PELI+ Sbjct: 61 SGVPVHVQLLGQEPHWMAENAIRAAELGARGIDLNFGCPAKMVNKSKGGAALLQHPELIH 120 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 KA R+AVPA++PVS K+RLGW++ E FEI DA+Q AGA EL VH RTK+ GY+A Sbjct: 121 SVVKACRDAVPANIPVSAKIRLGWENPEDCFEIVDAIQSAGANELTVHARTKQGGYKASE 180 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 I W+ I IR+R +IP+IANGEIW+++ Q+C+ +G D++M+ RGA NIPNL +VK+N Sbjct: 181 IKWEYINKIRERFSIPLIANGEIWNFEDGQRCIETTGVDSLMVCRGAFNIPNLGNMVKHN 240 Query: 241 EPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNNS 300 M W +VV LL Y++ E +GD GLY+ R+KQW +YLR+ Y EA ELF+ +R N + Sbjct: 241 HTPMVWSDVVDLLIYYSKFEMKGDKGLYYPNRVKQWFAYLRQSYPEANELFREIRTFNKA 300 Query: 301 PDIARAIQA 309 I IQ Sbjct: 301 APIVEHIQR 309 >UniRef50_Q9KT00 tRNA-dihydrouridine synthase C n=75 Tax=Gammaproteobacteria RepID=DUSC_VIBCH Length = 323 Score = 371 bits (953), Expect = e-101, Method: Composition-based stats. Identities = 181/309 (58%), Positives = 225/309 (72%) Query: 1 MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTP 60 MRV+L PMEGVLD L+R++LT++NDYD C+TEFVRVV+ LLP VF+R+CPELQ S+TP Sbjct: 1 MRVILGPMEGVLDHLMRDMLTQINDYDFCVTEFVRVVNLLLPDHVFYRLCPELQQGSKTP 60 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 SG V+VQLLGQ P W+AENA RA ELG++G+DLN GCP+K VN S GGA LL+ PELIY Sbjct: 61 SGVPVKVQLLGQDPHWMAENAIRAAELGAYGIDLNFGCPAKMVNQSKGGAALLQHPELIY 120 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 Q KA R+AVPAH+PVS K+RLGW+ E FEI DAV QA A EL VH RTK GY+A Sbjct: 121 QVVKACRDAVPAHIPVSAKIRLGWEDPEDCFEIVDAVAQAKADELTVHARTKAGGYKASE 180 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 I W I IRQ+ +IP+IANGE+W++ Q C+ +G D++M+ RGALN+PNL VVK+N Sbjct: 181 IKWHYIDQIRQKCSIPLIANGEVWNYADGQACIQTTGVDSLMVCRGALNVPNLGNVVKHN 240 Query: 241 EPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNNS 300 MPW EVV LL +YT+ E +GD G Y+ RIKQW +YLR Y +A ELF +R L Sbjct: 241 HAAMPWHEVVDLLLRYTQFEVRGDKGKYYPNRIKQWFAYLRHAYPQANELFGELRTLTQV 300 Query: 301 PDIARAIQA 309 I + Sbjct: 301 EPIVDQLHR 309 >UniRef50_Q1ZGI3 NifR3/Smm1 family protein n=1 Tax=Psychromonas sp. CNPT3 RepID=Q1ZGI3_9GAMM Length = 313 Score = 357 bits (918), Expect = 2e-97, Method: Composition-based stats. Identities = 147/308 (47%), Positives = 207/308 (67%), Gaps = 1/308 (0%) Query: 1 MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTP 60 M++ LAPMEGV+D +R LLT + DLC+TEF+RV+ LP KV+ R+ PEL N S+TP Sbjct: 1 MKITLAPMEGVMDHHMRALLTSLGGIDLCVTEFIRVISLTLPAKVYRRVSPELFNQSKTP 60 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 SGT VR+QLLGQ PQ LA NA +A+ +GS G+DLN GCP+K VN S GGA LLK PE +Y Sbjct: 61 SGTPVRIQLLGQDPQCLANNARKALLVGSDGIDLNFGCPAKAVNKSKGGAILLKSPETLY 120 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 + K +R ++ +SVK+RLG+ E A A+ +AGA EL VH RTKE+GY A Sbjct: 121 KIVKEVRASMHTCETLSVKIRLGYADKSLAIENAQAICEAGANELAVHARTKEEGY-APP 179 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 W I IR+ ++IPV ANG+I+ + A++C ISGC ++MIGRGAL PNL++V+K Sbjct: 180 AHWHWIAKIRESIDIPVTANGDIFSAEDAKRCHEISGCHSLMIGRGALATPNLAQVIKGI 239 Query: 241 EPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNNS 300 E WP+++ L+ +Y ++ GD Y +RIKQWL+++R + +A Q VR + ++ Sbjct: 240 EEPYSWPQILTLMSQYLIVQTHGDKEKYLPSRIKQWLTFMRLQQPQALIFLQAVRKIKST 299 Query: 301 PDIARAIQ 308 ++ AI+ Sbjct: 300 QEMIHAIE 307 >UniRef50_B0SC53 tRNA-dihydrouridine synthase n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SC53_LEPBA Length = 316 Score = 354 bits (909), Expect = 2e-96, Method: Composition-based stats. Identities = 143/305 (46%), Positives = 200/305 (65%), Gaps = 2/305 (0%) Query: 1 MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTP 60 MR++LAPMEG+LD +RE+LT++ YD C++EF+RV D LLP F R PEL+N+SRT Sbjct: 1 MRIILAPMEGLLDFRLREILTQIGGYDECVSEFIRVNDTLLPPHRFFRTAPELKNSSRTK 60 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 S T V++Q+LG P +A+NA LG++G+D+N GCP+ TVN + GGA LLK+P L+Y Sbjct: 61 SDTPVKIQILGSDPNRMADNAHLVASLGAYGIDINFGCPAPTVNRNRGGAALLKEPNLMY 120 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 KA+R VP ++PV+ K+RLG++S E + A A+++ GA E+VVH RTK GY+ Sbjct: 121 SIVKAVRNVVPENIPVTAKMRLGYESTELALDCAKALEEGGAKEIVVHARTKTDGYK-PP 179 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 W+ I I+ L I VIANGEIW Q A QC ISGCD +MIGRGA+ P+++ ++K Sbjct: 180 AYWEWIAKIKSILKINVIANGEIWTVQDAIQCQKISGCDDIMIGRGAVTNPSIALLIKKK 239 Query: 241 -EPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNN 299 E RM W + +L Y + + V RIKQWL YL +EY+EA FQ ++ ++N Sbjct: 240 LEERMSWQKTKEVLSSYWLSMEPDVEAVSRVGRIKQWLHYLSREYEEAQIDFQKIKRISN 299 Query: 300 SPDIA 304 D Sbjct: 300 PKDFE 304 >UniRef50_B3PD21 Dihydrouridine synthase family protein n=4 Tax=Proteobacteria RepID=B3PD21_CELJU Length = 321 Score = 343 bits (881), Expect = 4e-93, Method: Composition-based stats. Identities = 146/319 (45%), Positives = 194/319 (60%), Gaps = 7/319 (2%) Query: 1 MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTP 60 MR++LAPMEGV++ VR++LT + D C+TEF+RV DQ LP KVF++ EL+N +TP Sbjct: 1 MRIMLAPMEGVVEHHVRDILTRLGGLDGCVTEFIRVTDQKLPYKVFYKYAQELENHCQTP 60 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 +GT V+VQLLG P+ +A NA V G+ +DLN GCP+KTVN GGA LL+ P+ +Y Sbjct: 61 NGTPVKVQLLGSKPEPMALNAQELVRYGAKAIDLNFGCPAKTVNSHEGGACLLRTPDRVY 120 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 KA+R+AVP +PVS K+RLG++ E A AV+ AGA EL VH R+K GY+ Sbjct: 121 SIIKAVRDAVPRAIPVSAKIRLGFEDRTSYMENAQAVEAAGADELTVHARSKADGYK-PP 179 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK-- 238 W I DI+ L IPVIANGEIW + +C S C VM+GRG L+ P+L+R +K Sbjct: 180 AYWHYIADIKAALKIPVIANGEIWSVEDYLRCREQSQCADVMLGRGLLSCPDLARQIKAY 239 Query: 239 -YNEPRMP--WPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVR 295 E P W EV +L Y RL R+KQWL YL ++Y EA F+ V+ Sbjct: 240 LAGEEYRPLTWGEVCQILFDYYRLTTPLYETRNCGNRVKQWLMYLSRQYPEANVFFEAVK 299 Query: 296 VLNNSPDIAR-AIQAIDIE 313 DI IQA+D+ Sbjct: 300 RKTTPADIEACFIQAMDVA 318 >UniRef50_Q88LF2 tRNA-dihydrouridine synthase C n=38 Tax=cellular organisms RepID=DUSC_PSEPK Length = 323 Score = 334 bits (858), Expect = 2e-90, Method: Composition-based stats. Identities = 131/312 (41%), Positives = 200/312 (64%), Gaps = 6/312 (1%) Query: 1 MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTP 60 M++ LAPMEG++D+++R++LT V D C+TEF+RV D+LLP F ++ PEL+ +RT Sbjct: 1 MQIALAPMEGLVDNILRDVLTRVGGIDWCVTEFIRVCDRLLPASSFDKLAPELRQGARTA 60 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 +G +RVQLLG P LAENAA A ELG+ +DLN GCP+KTVN S GGA LLK+PEL++ Sbjct: 61 AGVPMRVQLLGSDPVCLAENAALACELGAPVIDLNFGCPAKTVNKSRGGAVLLKEPELLH 120 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 + +R AVPA++PV+ K+RLG+DS + E A A+ + G+ LVVH RTK +GY+ Sbjct: 121 AIVREVRRAVPANIPVTSKMRLGFDSPDGALECATALAEGGSAHLVVHARTKVEGYK-PP 179 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 W+ + ++ + +PV ANGEIW ++C +SG + +M+GRG ++ P+L + Sbjct: 180 AHWEWVARVQDVVKVPVFANGEIWTVDDWRRCREVSGAEDIMLGRGLVSRPDLGLQIAAA 239 Query: 241 E-----PRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVR 295 M W +++ LL+++ R + + Y R+KQWL+ L + Y EA LF +R Sbjct: 240 RDGRDYQPMSWHDLLPLLREFWRQAQAKLSPRYAPGRMKQWLAMLTRSYPEAVVLFAELR 299 Query: 296 VLNNSPDIARAI 307 ++ I+R + Sbjct: 300 REDDCARISRLL 311 >UniRef50_C5TM05 tRNA-dihydrouridine synthase C n=5 Tax=Neisseriaceae RepID=C5TM05_NEIFL Length = 321 Score = 334 bits (857), Expect = 2e-90, Method: Composition-based stats. Identities = 115/319 (36%), Positives = 193/319 (60%), Gaps = 7/319 (2%) Query: 1 MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTP 60 M+++LAPM+G++D ++R+LLT + +D C++EFVR+ + + + PE+ +A+RT Sbjct: 1 MQLILAPMQGLVDDVMRDLLTRIGGFDECVSEFVRITHTVHSRATWLKYVPEIAHANRTT 60 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 +GT VQLLG + +A NA AV G+ +DLN GCP+ TVN GGA LLK+P+LIY Sbjct: 61 AGTPCTVQLLGSDAENMAVNALEAVRFGADKIDLNFGCPAPTVNKHKGGAVLLKEPDLIY 120 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 +R+ +P H+P++ K+RLG++ E A A++ GA L VH RTK +GY Sbjct: 121 HIVHTLRQRLPQHIPLTAKMRLGYEDKSLALECASAIENGGACALTVHARTKVEGYE-PP 179 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 W+ + IR +NIPV ANG++++ Q ++SGC++VM+GRGA+ P+L+R +K Sbjct: 180 AHWEWVRKIRDAVNIPVTANGDVFNLQDYLDIKSVSGCNSVMLGRGAVIRPDLARQIKQY 239 Query: 241 EPRMPWPEVV------ALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHV 294 E + ++Q + + + Y V+R+KQWL ++KE+++A LF + Sbjct: 240 ENGETVKDTDFAEVSSWIVQFFDLCLAKEASNKYPVSRLKQWLGMMKKEFEQAQVLFDRI 299 Query: 295 RVLNNSPDIARAIQAIDIE 313 R + + ++ + + + + E Sbjct: 300 RAIKEADEVKQILLSFEQE 318 >UniRef50_Q9JUP6 tRNA-dihydrouridine synthase C n=23 Tax=Neisseriaceae RepID=DUSC_NEIMA Length = 333 Score = 333 bits (854), Expect = 6e-90, Method: Composition-based stats. Identities = 126/318 (39%), Positives = 192/318 (60%), Gaps = 7/318 (2%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 R++LAPM+G++D ++R+LLT + YD C++EFVR+ + + + PE+ N ++T S Sbjct: 14 RIILAPMQGLVDDVMRDLLTRIGGYDECVSEFVRITHTVHSRATWLKYVPEIANGNKTFS 73 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 GT VQLLG +A NA AV G+ +DLN GCP+ TVN GGA LLK+PELI+ Sbjct: 74 GTPCTVQLLGSDADNMAANALEAVRFGADKIDLNFGCPAPTVNRHKGGAILLKEPELIFH 133 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 K +RE +PAH+P++ K+RLG++ E A A+ + GA L VH RTK +GY Sbjct: 134 IVKTLRERLPAHIPLTAKMRLGYEDKSPALECACAIAEGGACGLTVHARTKAEGYE-PPA 192 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNE 241 W+ I IR ++IPV ANG+++ Q ISGC++VM+GRGA+ P+L+R +K E Sbjct: 193 HWEWIRKIRDSVDIPVTANGDVFSLQDYIGIKTISGCNSVMLGRGAVIRPDLARQIKQYE 252 Query: 242 PRMP-----WPEVVALLQKYTRLEKQGDT-GLYHVARIKQWLSYLRKEYDEATELFQHVR 295 P + EV ++++ L + Y +AR+KQWL ++K +D A LF VR Sbjct: 253 NGGPVKDTDFAEVSKWIRQFFELCLTKEANNKYPIARLKQWLGMMKKTFDPAQTLFDRVR 312 Query: 296 VLNNSPDIARAIQAIDIE 313 + ++ ++ R + A + E Sbjct: 313 TVKDADEVRRILNAFEHE 330 >UniRef50_Q47C15 Dihydrouridine synthase, DuS n=1 Tax=Dechloromonas aromatica RCB RepID=Q47C15_DECAR Length = 319 Score = 330 bits (846), Expect = 5e-89, Method: Composition-based stats. Identities = 130/297 (43%), Positives = 187/297 (62%), Gaps = 2/297 (0%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 R+LLAPMEG+ D L+R +LT++ YD I EFVRV + +LP K + RICPEL N S+T + Sbjct: 3 RILLAPMEGLADDLLRGVLTDIGGYDWGICEFVRVSNSVLPAKTYERICPELLNGSKTRT 62 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 GT +RVQLLG P ++AENA R V L GVDLN GCP+ TV GG+ LL +PEL+ + Sbjct: 63 GTPMRVQLLGSDPHFMAENARRLVALNPAGVDLNFGCPAPTVFRHRGGSALLGEPELLNE 122 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 A+R VPAH+P + K+RLG D + + A A++ AG EL+VHGRT+ GYR Sbjct: 123 ITSAVRSVVPAHIPFTAKMRLGIDDTSRAIDCAQALEAAGINELIVHGRTRSDGYR-PPA 181 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNE 241 W+ I +R ++IP+IANGE+W + + C +GC +M+GRGA+ P L+R V+ E Sbjct: 182 RWEWIDKVRDAIHIPLIANGEVWTVEDFRNCQLATGCADIMVGRGAVADPLLARRVR-GE 240 Query: 242 PRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLN 298 W E+ + Y ++ ++ R+KQWL+ +R+ Y EA L++ +R + Sbjct: 241 ETGGWDEIRPTVATYWLGVRKKVVPVHAGGRVKQWLAMMRRNYPEAEVLYERLRPIK 297 >UniRef50_C9XSF8 tRNA-dihydrouridine synthase n=24 Tax=Clostridia RepID=C9XSF8_CLODC Length = 322 Score = 327 bits (840), Expect = 2e-88, Method: Composition-based stats. Identities = 79/314 (25%), Positives = 149/314 (47%), Gaps = 17/314 (5%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 +V L+PM GV D R + E L TE + + ++ Sbjct: 11 KVFLSPMAGVTDLPFRLICKEQG-CGLLYTEMINGKALCYDDENTKKML------KIEEE 63 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 V VQ+ G P+++ A + + +D+N GCP+ V +G G+ L+K+P+L + Sbjct: 64 EHPVAVQIFGSEPEFMGRAAEIMNDYSNEILDINMGCPAPKVVKNGDGSALMKNPKLAEE 123 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 +A+ + + PV++K+R GWD EIA + G + L +HGRT+EQ Y + Sbjct: 124 VLRAVVKN--SKKPVTLKIRKGWDDNSVNAVEIAKIAEDCGISALAIHGRTREQFYTGK- 180 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 DW I +I++ L+IPVI NG+++ + + + +GCDA+MIGRGA P + + + + Sbjct: 181 ADWDIIAEIKKNLSIPVIGNGDVFTIEDSINMLDKTGCDAIMIGRGAQGNPWIFKRINHY 240 Query: 241 ------EPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHV 294 P E ++ K+ +L + V +++ +++ K + +L + Sbjct: 241 MNTGEILPEPTLNEKISTAIKHLKLAVEEHGEYVAVREMRKHIAWYLKGLRNSAKLRDEI 300 Query: 295 RVLNNSPDIARAIQ 308 + + ++ ++ Sbjct: 301 NKIEDYQEVVSKLE 314 >UniRef50_Q1N033 Putative uncharacterized protein n=1 Tax=Bermanella marisrubri RepID=Q1N033_9GAMM Length = 321 Score = 327 bits (838), Expect = 4e-88, Method: Composition-based stats. Identities = 129/308 (41%), Positives = 192/308 (62%), Gaps = 3/308 (0%) Query: 1 MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTP 60 M++ LAPMEG++D +R LLT +D C+TEF+RV QLLP + F RICPE + +TP Sbjct: 1 MQLSLAPMEGLVDVHMRTLLTRGGYFDYCVTEFLRVTTQLLPERSFRRICPESDHQWKTP 60 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 +GT V +QLLG P +AENA RA ELG+ V++N GCPS+ VNG GGA LL+ P+ I+ Sbjct: 61 AGTPVHLQLLGSDPVAMAENACRAAELGAPVVNINFGCPSRFVNGRCGGAYLLQFPDQIH 120 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 +++R+A+P H+P++ K+RLG+ A A++ AG ++ +H RTK QGYR Sbjct: 121 TILESVRKALPEHVPLTAKMRLGFKDDALALANAQAMESAGVRDICIHARTKVQGYR-PP 179 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 W I +I+Q++ +P+IANGEIW+ + + C A S C+ VM+GRGA+ P L+ +K Sbjct: 180 AHWHQIKNIKQQVKVPIIANGEIWNRRDYEACKAASHCEHVMLGRGAVADPELAATIKGC 239 Query: 241 EPRMPW-PEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNN 299 E W + L+ L + G Y RIKQW S+L+ Y++A LF+ ++ + Sbjct: 240 ESSDTWIHRLHDLIWMLDELVEFGGQS-YAHGRIKQWFSFLKMSYEQAVPLFESLKTMKE 298 Query: 300 SPDIARAI 307 + I R + Sbjct: 299 ASAIRRFL 306 >UniRef50_A3JG66 Putative uncharacterized protein n=3 Tax=Gammaproteobacteria RepID=A3JG66_9ALTE Length = 335 Score = 325 bits (834), Expect = 1e-87, Method: Composition-based stats. Identities = 128/314 (40%), Positives = 191/314 (60%), Gaps = 6/314 (1%) Query: 1 MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTP 60 MR++LAPMEG++D+ +RE LT+V D C+TEF+RV +LP ++F++ PEL N S T Sbjct: 1 MRIILAPMEGLVDAPIRETLTKVGGIDRCVTEFIRVTHGMLPPRIFYKYAPELHNNSLTR 60 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 G V VQLLG P +A + A+A ELG+ VD+N GCP+KTVN GG L+++PEL++ Sbjct: 61 VGVPVAVQLLGSDPHMMARHGAKAAELGATQVDINFGCPAKTVNKHKGGCVLMREPELMH 120 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 + A+R+AVPA + V+ K+RLG+D A A+ AGA E+V+H R+K GY+ Sbjct: 121 EITAAVRQAVPADILVTAKMRLGYDDRSMGVACAQALDAAGAGEIVIHARSKTDGYK-PP 179 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 W+ I R+ + VIANG+I+ +C +SGCD VMIGRG + P+L+R ++ + Sbjct: 180 AYWEEIAKAREAVKAKVIANGDIFTVADYWRCREVSGCDDVMIGRGLVARPDLARQIRAS 239 Query: 241 E-----PRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVR 295 + M WPE +AL+Q+Y + Y RIKQW++YLR+ + EA L+ R Sbjct: 240 QRGESIELMTWPEALALVQEYGYALQGWLEDKYVTGRIKQWMNYLRQGFSEAEALWPQAR 299 Query: 296 VLNNSPDIARAIQA 309 + + + Sbjct: 300 KIREVAPMFEFLNQ 313 >UniRef50_Q884C6 tRNA-dihydrouridine synthase C n=13 Tax=Proteobacteria RepID=DUSC_PSESM Length = 317 Score = 324 bits (830), Expect = 3e-87, Method: Composition-based stats. Identities = 126/308 (40%), Positives = 190/308 (61%), Gaps = 6/308 (1%) Query: 1 MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTP 60 M++ LAPMEG++D ++R+ LT+V D C+TEF+RV ++L+P F++ E N ++T Sbjct: 1 MQIALAPMEGLVDDILRDALTKVGGIDWCVTEFIRVSERLMPAHYFYKYASEFHNGAKTD 60 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 +GT +R+QLLG P LAENAA A ELG+ +DLN GCP+KTVN S GGA LLK+PEL++ Sbjct: 61 AGTPLRLQLLGSDPVCLAENAAFACELGAPVLDLNFGCPAKTVNRSRGGAILLKEPELLH 120 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 +R AVP +PV+ K+RLG+++ + + A A+ GA ++VVH RTK GY+ Sbjct: 121 TIVSQVRRAVPKDIPVTAKMRLGYENTDGALDCARALADGGAAQIVVHARTKVDGYK-PP 179 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 W+ I I++ + +PV+ANGEIW + ++C I G +MIGRG + P+L+R + Sbjct: 180 AHWEWIARIQEVVKVPVVANGEIWTVEDWRRCREICGARDIMIGRGLVARPDLARQIAAA 239 Query: 241 EP-----RMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVR 295 + M W E+ +L+ + + T + R+KQWL L K Y EAT +F +R Sbjct: 240 QKGEEVVPMTWAELQPMLRTFWQACLVKMTLVQAPGRLKQWLVLLTKSYPEATLMFNTLR 299 Query: 296 VLNNSPDI 303 + I Sbjct: 300 RETDCDRI 307 >UniRef50_Q21L63 Dihydrouridine synthase, DuS n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21L63_SACD2 Length = 318 Score = 323 bits (828), Expect = 5e-87, Method: Composition-based stats. Identities = 136/317 (42%), Positives = 189/317 (59%), Gaps = 11/317 (3%) Query: 1 MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTP 60 MR+ LAPMEGV+D +R +++ V D+C+TEF+RV D +LP K+F + CPEL S TP Sbjct: 1 MRIFLAPMEGVVDHHMRNIISSVGGVDICVTEFIRVTDHVLPNKIFKKACPELDENSETP 60 Query: 61 S-----GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKD 115 + VRVQLLG P LA NAARA ELG+ +DLN GCP+KTVN GGA LL + Sbjct: 61 ALYRGAHCPVRVQLLGSNPSALAANAARAAELGAVAIDLNFGCPAKTVNRHKGGACLLDE 120 Query: 116 PELIYQGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQG 175 + ++ A+R+A PA PV+ K+RLG+ + + A A++ AGA EL VH R+K G Sbjct: 121 TDTVFDIVNAVRKATPASTPVTAKIRLGYLNRDSYLRNAKAIEAAGANELCVHARSKTDG 180 Query: 176 YRAEHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSR 235 Y+ W IGDIR L+IPV+ANGEIW + ++C S C M+GRG L P+L+ Sbjct: 181 YQ-PPAYWHYIGDIRDNLSIPVVANGEIWSLEDFKRCAEQSKCSDFMLGRGLLAKPDLAL 239 Query: 236 VVK-----YNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATEL 290 +K + W EV A ++ Q Y R+KQWL YL+++Y EA EL Sbjct: 240 EIKQYMAGEAFNPLSWDEVCAHVRTLFERNCQSYPPKYLGNRVKQWLFYLQRQYSEAAEL 299 Query: 291 FQHVRVLNNSPDIARAI 307 F+ ++ + + RA+ Sbjct: 300 FEAIKRERDEQALRRAL 316 >UniRef50_B3QWF2 TIM-barrel protein, nifR3 family n=26 Tax=Bacteroidetes/Chlorobi group RepID=B3QWF2_CHLT3 Length = 402 Score = 320 bits (821), Expect = 4e-86, Method: Composition-based stats. Identities = 91/318 (28%), Positives = 147/318 (46%), Gaps = 17/318 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 V+LAPME V D R L D+ TEF+ + R + Sbjct: 56 VILAPMEDVTDPSFRRLCKHYG-ADIVFTEFISSDGLIRHAVKSKRKLDVFDD------E 108 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 V +Q+ G + + E A A G +D+N GCP+K V G G G+ LL P+L+ + Sbjct: 109 RPVAIQIFGNQIEPMVEAAQMAEAAGPDFIDINYGCPAKKVAGKGAGSGLLCQPDLMEKI 168 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 A+ +AV LPV+ K R+GWD + ++ G L +HGRT+ Q Y+ Sbjct: 169 TDAVVKAV--RLPVTAKTRIGWDERSISILDTVRRLEGCGIQALSIHGRTRAQMYKGR-A 225 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY-- 239 DW I ++ IP+I NG+IW + A++ +G D VMIGRGA+ P L R K+ Sbjct: 226 DWSWIARAKEVATIPIIGNGDIWTAEDAKRMFDETGVDGVMIGRGAIGNPFLFREAKHLI 285 Query: 240 ----NEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVR 295 + P+ E VA+ ++ + + Y V +++ S K +++ ++ Sbjct: 286 QTGEHLPQATHRERVAVAIRHLEMSLERKGEKYGVLEMRRHYSTYLKGLPNVSKVRDYLV 345 Query: 296 VLNNSPDIARAIQAIDIE 313 N+ I A++ ++E Sbjct: 346 RENDPNLIVEALRRFEVE 363 >UniRef50_Q127F8 Dihydrouridine synthase, DuS n=7 Tax=Proteobacteria RepID=Q127F8_POLSJ Length = 344 Score = 319 bits (819), Expect = 7e-86, Method: Composition-based stats. Identities = 142/317 (44%), Positives = 193/317 (60%), Gaps = 10/317 (3%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 VLLAPMEG+LD ++R++LT V D C++EF+R+ DQLLP +VF RI PEL N RT +G Sbjct: 9 VLLAPMEGLLDFVLRDILTRVGGIDRCVSEFIRITDQLLPERVFTRIVPELHNGGRTLAG 68 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 VR QLLG P +AENAAR LG G+DLN GCP+ VN GGGA+LLK+PE + Sbjct: 69 VPVRAQLLGSDPACMAENAARLATLGPAGIDLNFGCPAAVVNRHGGGASLLKEPETLLAI 128 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHID 182 A+R AVPA +PVS K+RLG++ + E A A+ + GA ELVVH RTK Q Y+ Sbjct: 129 VSAVRRAVPAGMPVSAKMRLGYNDDSRAVECALAIAEGGAGELVVHARTKAQAYK-PPAY 187 Query: 183 WQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY--- 239 W+ I DIR + IPV+ANGEIW A++C SGC +MIGRGA+ P L +K Sbjct: 188 WERIADIRAAVQIPVVANGEIWTVDDARRCREASGCSMLMIGRGAVADPGLGLAIKAAMS 247 Query: 240 ------NEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQH 293 EP + W E+V LL + + R+KQWL++LR+ + +A +Q Sbjct: 248 HPAAGGQEPGITWAELVPLLADFWHVVCARLDARARPGRLKQWLNFLRRRFPQAEAAYQV 307 Query: 294 VRVLNNSPDIARAIQAI 310 ++ + + I + A+ Sbjct: 308 LKTITDPALIDEWLAAL 324 >UniRef50_A4BCJ5 NifR3/Smm1 family protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BCJ5_9GAMM Length = 314 Score = 319 bits (818), Expect = 8e-86, Method: Composition-based stats. Identities = 140/308 (45%), Positives = 192/308 (62%), Gaps = 2/308 (0%) Query: 1 MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTP 60 M + LAPMEG+ D +R+L+T+ YDL ++EFVRVVDQLLP +VF PEL RT Sbjct: 1 MSIYLAPMEGLADHYLRKLITQCGGYDLAVSEFVRVVDQLLPKRVFLEQVPELHQQGRTG 60 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 +GT VRVQLLG PQ LAENA RA+ELGS G+DLN GCPSKTVN S GGA LL +PE IY Sbjct: 61 AGTPVRVQLLGSHPQALAENALRAIELGSHGLDLNFGCPSKTVNASKGGAVLLTEPESIY 120 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 +++R+A+P +S K+RLG++ +E A A++ GA E++VH RTK+QGY Sbjct: 121 AVVRSVRDALPGDQTLSAKMRLGFEDNSLMWECAHAIRDGGANEIIVHARTKQQGY-TPP 179 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 W D RL IP+I NGEIW A + + C ++M+GRGA+ P L+ + Sbjct: 180 AYWHLPADFEARLGIPMIINGEIWTPADAGRAQHEANCSSIMLGRGAVRNPWLASEITGR 239 Query: 241 EPRM-PWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNN 299 + W +V L+ ++ + Q + Y R+KQWL++LR + EA LFQ +R LN Sbjct: 240 HNQKSDWSQVHQLVVQFWQEVTQQMSPRYCAGRLKQWLNHLRLSFVEAERLFQRIRRLNT 299 Query: 300 SPDIARAI 307 +I + + Sbjct: 300 IDEINQVL 307 >UniRef50_B9MMW4 TIM-barrel protein, nifR3 family n=3 Tax=Clostridia RepID=B9MMW4_ANATD Length = 328 Score = 318 bits (815), Expect = 2e-85, Method: Composition-based stats. Identities = 85/318 (26%), Positives = 158/318 (49%), Gaps = 20/318 (6%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 ++ LAPM G D + R L + D+ +TE + +L + S + Sbjct: 7 KIFLAPMAGFTDKVFRRLCSRFG-ADVTVTEMISSKALVLGSAKTKDL------ISFSEE 59 Query: 62 GTLVRVQLLGQFPQWLAENAARAV-ELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 + VQ+ G P+ +A++ E +D+N GCP + SG G L+K+P L Sbjct: 60 EKIRGVQIFGNDPEVMAQSVKILQDEFEYHFIDINMGCPVPKLVRSGEGCALMKNPSLAA 119 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRAE 179 + + + + + PVSVK+R G+D E A +Q++GA+ + VHGRT+ Q Y + Sbjct: 120 KIVEEVAKV--SRKPVSVKIRKGFDDENINAPEFAYILQESGASFVTVHGRTRAQLYSGK 177 Query: 180 HIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY 239 DW+ I ++++L IPVIANG+I D++SA++ ++ D++MIGR AL P + +K Sbjct: 178 -ADWEIIRKVKEKLKIPVIANGDIVDFESAKKAYEVTRADSIMIGRAALGNPWVFLQIKE 236 Query: 240 N-------EPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQ 292 +P ++ ++ +T+L + V ++ LS+ K + A ++ Sbjct: 237 GFEKGYVETKVLPHMKIRVAIEFFTQLCSE-KGDKMAVLEARKHLSFFVKGIENAAKIRD 295 Query: 293 HVRVLNNSPDIARAIQAI 310 + +NN+ ++ ++ + Sbjct: 296 KINRINNATELLEFLKEL 313 >UniRef50_D2RLJ7 TIM-barrel protein, nifR3 family n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RLJ7_ACIFE Length = 331 Score = 317 bits (814), Expect = 2e-85, Method: Composition-based stats. Identities = 85/307 (27%), Positives = 132/307 (42%), Gaps = 16/307 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 + LAPM GV D R + E+ D ++E V L P Sbjct: 19 IALAPMAGVTDLPFRVICRELG-ADYTVSEMVSAKALLFKN------PKTFAMLEVDPRE 71 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 V +QL G P+ L + A E G+ +D N GCP + +G G+ L+KDPE Y Sbjct: 72 HPVAIQLFGSVPEELVKGAKIVAEHGADIIDFNMGCPVHKIVANGEGSALMKDPERAYAC 131 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 A+ +AV PV+VK R GWD EIA ++AG + VHGRT+ Q Y + Sbjct: 132 LAALVDAV--DRPVTVKFRAGWDEDHRNAVEIARLAEKAGVAAVAVHGRTRGQFYSGK-A 188 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY-- 239 DW I +++ ++IPV+ NG+++ Q A +A + CD VMI RGA P + R V+ Sbjct: 189 DWDIIRQVKEAVSIPVLGNGDVFTAQDALDLLAATHCDGVMIARGAQGNPWIFREVQAVL 248 Query: 240 ---NEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRV 296 P + E A+++++ R + ++ + + + Sbjct: 249 AGKTIPPVTLEERFAMVRRHLRDLTAFKGEKVAIREMRHHGACYFTGLPHSAHYRNAINQ 308 Query: 297 LNNSPDI 303 Sbjct: 309 CLTKEAF 315 >UniRef50_D0J1P6 Dihydrouridine synthase, DuS n=7 Tax=cellular organisms RepID=D0J1P6_COMTE Length = 347 Score = 317 bits (812), Expect = 4e-85, Method: Composition-based stats. Identities = 138/318 (43%), Positives = 195/318 (61%), Gaps = 9/318 (2%) Query: 1 MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTP 60 MR+LLAPMEG+LD ++R++LT V D C++EF+R+ LLP KV+ R PEL+N SRT Sbjct: 1 MRLLLAPMEGLLDFVLRDVLTRVGGADRCVSEFIRISGSLLPDKVYLRTMPELRNGSRTL 60 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 +G VR QLLG P +AENAA LG G+DLN GCP+K VN GGGA+LL+DPE I Sbjct: 61 AGVPVRAQLLGSDPVSMAENAANLARLGPEGIDLNFGCPAKVVNRHGGGASLLQDPEQIV 120 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 + A+R AVPA +PVS K+RLG++ E A A++Q GA E+VVH RTK GYR Sbjct: 121 RVVDAVRRAVPAQMPVSAKMRLGFNDRALMTECAQAMEQGGACEIVVHARTKLDGYR-PP 179 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 W+ I IR+ + + V+ANGEIW + A +C +SGCD +M+GRG + P L+ V+ Sbjct: 180 AYWEEIPRIREAVGVNVVANGEIWTVEEALRCREVSGCDDLMLGRGIVADPGLALAVRRA 239 Query: 241 EPR--------MPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQ 292 + W +V +Q++ + + R+KQWL+ +R+ + EA +Q Sbjct: 240 VEHGSVSAVAGIDWLALVPQVQRFWHMVCEDLEPRQRAGRLKQWLNLMRRRFPEAELAYQ 299 Query: 293 HVRVLNNSPDIARAIQAI 310 VR + I+ +QA+ Sbjct: 300 EVRTQTDQRAISDWVQAL 317 >UniRef50_C4Z9L8 tRNA-dihydrouridine synthase n=26 Tax=Firmicutes RepID=C4Z9L8_EUBR3 Length = 323 Score = 314 bits (804), Expect = 3e-84, Method: Composition-based stats. Identities = 79/302 (26%), Positives = 142/302 (47%), Gaps = 17/302 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 ++L PM GV D R L E L E V L K + S Sbjct: 20 LILGPMAGVTDLPFRLLCKEQG-AGLLCMEMVSAKAILYKNKNTESLL------SIDERE 72 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 V +Q+ G PQ +A+ A + E +D+N GCP + +G G+ L+K+P L Q Sbjct: 73 KPVSLQMFGSDPQIMAQIAKQIEERPFDILDINMGCPVPKIVNNGEGSALMKNPLLAGQI 132 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 +++ +A+ PV+VK+R G+D E+A +++GA+ + VHGRT+EQ Y + Sbjct: 133 IESIVKAI--DKPVTVKIRKGFDDEHVNAVELAHVAEESGASAVAVHGRTREQYYSGK-A 189 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY-- 239 DW I +++ ++IPVI NG++ + + +GCD MI RGA P + + + Sbjct: 190 DWDIIRQVKEAVSIPVIGNGDLLSAEDVIKMQEQTGCDGFMIARGAQGNPWIFSQILHYF 249 Query: 240 ----NEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVR 295 ++ + + EV ++ ++ R+ + + +++ ++ Y ++ L V Sbjct: 250 ETGEHQEKPSFEEVRRMILRHARMMIEFKGEYTGIHEMRKHTAWYTAGYPHSSRLRAAVN 309 Query: 296 VL 297 + Sbjct: 310 TV 311 >UniRef50_A9KHE5 TIM-barrel protein, nifR3 family n=2 Tax=Clostridiales RepID=A9KHE5_CLOPH Length = 324 Score = 313 bits (803), Expect = 4e-84, Method: Composition-based stats. Identities = 86/309 (27%), Positives = 144/309 (46%), Gaps = 17/309 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 ++L PM GV D R L E DL TE V K + + Sbjct: 14 LVLGPMAGVTDLPFRLLCKEQG-ADLIYTEMVSAKGIYYNNKNTEVLLEVEEKE------ 66 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 V +QL G+ P ++E A R +D+N GCP V +G G+ L+ PE I + Sbjct: 67 RPVALQLFGEDPYIMSEMAKRIEHRNFDFLDINMGCPVPKVVNNGEGSALMLKPERIGEI 126 Query: 123 AKAMREAVPAHLPVSVKVRLGW-DSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 A+ +A+ PV+VK+R G+ E+A ++Q+G + VHGRT+EQ Y E Sbjct: 127 VSAISKAIKK--PVTVKIRKGFTKDNINAVEVAKVIEQSGGAAIAVHGRTREQYYSGE-A 183 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN- 240 DW I +++ ++IPVI NG++ + ++ M+ +GCDAVMI RG P K+ Sbjct: 184 DWDIIKAVKEAVSIPVIGNGDVQTPEDVKRMMSYTGCDAVMIARGVRGNPWFFSQAKHYL 243 Query: 241 -----EPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVR 295 + PEV+ ++ ++ RL + + +++ +++ Y ++ +L V Sbjct: 244 NTGEILAKPSVPEVIEMILRHGRLAIEVKGEFTAMHEMRKHVAWYTMGYPKSAKLRNQVN 303 Query: 296 VLNNSPDIA 304 + D+ Sbjct: 304 EIETYEDLI 312 >UniRef50_C0WDP2 Putative uncharacterized protein n=1 Tax=Acidaminococcus sp. D21 RepID=C0WDP2_9FIRM Length = 321 Score = 313 bits (802), Expect = 6e-84, Method: Composition-based stats. Identities = 87/319 (27%), Positives = 138/319 (43%), Gaps = 17/319 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 V+LAPM GV D R + E N D ++E V L + + P Sbjct: 11 VVLAPMAGVTDLPFRVICRE-NGADYTVSEMVSAKALLYKNQKT------FAMLTIDPKE 63 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 +QL G P LA G+ +D+N GCP + +G G+ L+KDP+ +Y Sbjct: 64 HPTAIQLFGSVPSELAAAGKIVESRGADMIDVNMGCPVHKIVSNGEGSALMKDPDKVYAI 123 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGEKKFE-IADAVQQAGATELVVHGRTKEQGYRAEHI 181 A+ +AV +PV+VK R GWD K IA ++AG + + VHGRT+ Q Y+ + Sbjct: 124 LAALVDAVS--IPVTVKFRAGWDEAHKNAAVIAQMAEKAGVSAVCVHGRTRAQFYQGK-A 180 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNE 241 DW I +++ + IPV+ NG+I+ + A + +GCD VMI RGA P + R VK Sbjct: 181 DWDIIRAVKESVGIPVLGNGDIFHAEDALRMKEETGCDGVMIARGAEGNPWIFRDVKALL 240 Query: 242 PRMPWP-----EVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRV 296 E A+++++ V ++ + + + Sbjct: 241 HGKAISPVSVQERFAMIRRHLHDLILFKGERVGVREMRHHGAMYLTGLPHSAYYRNTINQ 300 Query: 297 LNNSPDIARAIQAIDIEKL 315 + + + EKL Sbjct: 301 AQTEEALLAVLGEYE-EKL 318 >UniRef50_Q4FQ57 Possible tRNA-dihydrouridine synthase n=24 Tax=Gammaproteobacteria RepID=Q4FQ57_PSYA2 Length = 350 Score = 310 bits (796), Expect = 3e-83, Method: Composition-based stats. Identities = 134/318 (42%), Positives = 191/318 (60%), Gaps = 16/318 (5%) Query: 4 LLAPMEGVLDSLVRELLTEVND-----YDLCITEFVRVVDQLLPVKVFHRICPELQNASR 58 LLAPMEG+ D L+R++LT++ YD ++EF+RV +LP VF++ PEL + ++ Sbjct: 34 LLAPMEGLTDPLMRQILTQIAADLGRPYDWSVSEFIRVTQHVLPAHVFYKYVPELHHDAK 93 Query: 59 TPSGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPEL 118 T SGT + +QLLG Q +AENAA A ELG+ +D+N GCP+KTVN GG+ LL +PE+ Sbjct: 94 TASGTSIHIQLLGSEAQLMAENAAHACELGAPAIDINFGCPAKTVNSHRGGSVLLDEPEV 153 Query: 119 IYQGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRA 178 +Y A+R+AVPA++PVS K+RLG+ + +I A+ +GA L +H RTK QGY+ Sbjct: 154 MYDIISAVRQAVPANIPVSAKIRLGYTDTSRMDDIRGAIAASGADWLTIHARTKTQGYK- 212 Query: 179 EHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK 238 W I L IPVIANGEIW+ + AQ CMA SG +M+GRGA+ P+L V Sbjct: 213 PPAYWDKIQAF-NSLKIPVIANGEIWNSEHAQNCMAQSGTTHLMLGRGAVTRPDLIAQVD 271 Query: 239 -------YNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELF 291 N P + W +++A ++ + + D L V R KQWL+ L K Y EA L+ Sbjct: 272 CGLDSEMSNTPTLLWQDLIAHQIRFLQGAAKSDIVL--VGRYKQWLAMLTKGYSEAKILW 329 Query: 292 QHVRVLNNSPDIARAIQA 309 ++ N I A+Q Sbjct: 330 DSIKREKNKTAIISALQM 347 >UniRef50_Q55724 Probable tRNA-dihydrouridine synthase 1 n=34 Tax=Cyanobacteria RepID=DUS1_SYNY3 Length = 355 Score = 309 bits (792), Expect = 8e-83, Method: Composition-based stats. Identities = 103/322 (31%), Positives = 161/322 (50%), Gaps = 19/322 (5%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 RVL +P+ GV D + R L+ + TE V + R P++ P Sbjct: 43 RVLQSPLSGVTDLVFRRLVRRYAPQAMLYTEMVSATEIHH-----LRTLPQVMEID--PR 95 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + +QL P ++AE A +AV G+ VD+N GCP + GGG++LL+ P + Sbjct: 96 ENPISIQLFDCRPDFMAEAAQKAVAQGAQSVDINMGCPVNKITKKGGGSSLLRQPAVAEA 155 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKK-FEIADAVQQAGATELVVHGRTKEQGYRAEH 180 K + AV +PV+VK RLGWD GE E A +Q AGA L +HGRT+ QGY Sbjct: 156 IVKTVVAAV--DVPVTVKTRLGWDDGEINIVEFAQRLQDAGAQMLTLHGRTRAQGYNGR- 212 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY- 239 WQ I ++Q L IPVIANG+I+ ++A C+ +G D VM RG+L P L +++ Sbjct: 213 ARWQWIAKVKQALTIPVIANGDIFSVEAAIACLEETGADGVMCSRGSLGYPFLVGEIEHF 272 Query: 240 --NEPRMPWPEVVALL---QKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHV 294 + P V L Q++ ++ + G + + ++ L++ K++ A L + + Sbjct: 273 FKTGEKRKAPTVAEKLTCAQEHLQMLWEY-KGQRGLFQARKHLAWYCKDFPGAAALREQL 331 Query: 295 RVLNNSPDIARAI-QAIDIEKL 315 +N+ + + QAI KL Sbjct: 332 FQINSVQEGKDLLDQAISTAKL 353 >UniRef50_A4AAB0 tRNA-dihydrouridine synthase C n=6 Tax=Gammaproteobacteria RepID=A4AAB0_9GAMM Length = 328 Score = 307 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 134/311 (43%), Positives = 195/311 (62%), Gaps = 6/311 (1%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 R+LLAPMEGV+D +R+LLT++ D C+TEFVRV +LLP +VFHR+CPEL N T S Sbjct: 8 RILLAPMEGVIDHTMRDLLTQLGGVDRCVTEFVRVSQELLPPRVFHRLCPELANGGCTSS 67 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 G V +Q+LG P +AENA+RA ELG+ GVDLN GCP+KTVN S GG+ +L++PE +++ Sbjct: 68 GVPVYLQILGGDPSVVAENASRAAELGAPGVDLNFGCPAKTVNRSDGGSIILREPERVHR 127 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 A R+A+P +P+SVK+RLG+DS ++ +I + A +ELV+H RT+ GYR Sbjct: 128 IVAATRQALPPSVPLSVKIRLGFDSSDRFLDIVSGIDAARPSELVIHARTRADGYR-PPA 186 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNE 241 W+ I R + +P+IANGEIW A+ SG +M+GRG L P+L R+++ + Sbjct: 187 YWEHIALARSKTRLPLIANGEIWGVGDAKLAREKSGTRDLMLGRGVLCRPDLPRLLRAAD 246 Query: 242 PR-----MPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRV 296 + W E+ L KY + + Y V IKQWL YLR Y +A +F ++ Sbjct: 247 SGVEVDALTWHEIRGYLLKYLAITLESYDARYAVNPIKQWLGYLRHYYPQAAAMFVVIKR 306 Query: 297 LNNSPDIARAI 307 + + ++ A+ Sbjct: 307 ILDPEELRLAL 317 >UniRef50_B8GCQ5 TIM-barrel protein, nifR3 family n=6 Tax=Chloroflexi (class) RepID=B8GCQ5_CHLAD Length = 351 Score = 307 bits (787), Expect = 4e-82, Method: Composition-based stats. Identities = 95/319 (29%), Positives = 148/319 (46%), Gaps = 15/319 (4%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 ++LAPM GV DS+ R ++ + L TE HR+ L P Sbjct: 28 IVLAPMAGVTDSIFRRMILRLGGCGLVSTEMTNAASVSPKALRRHRLLDYL------PEE 81 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 + +Q+ G P +A A +LG+ +D+NCGCPS V G G G+ LL+D + + Sbjct: 82 RPLTMQISGNDPDLVANAARVVEQLGADIIDINCGCPSPKVTGGGHGSALLRDLPKMERL 141 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 +A+R AV +PV++K+R GWD E + AG L +H RT+EQGY+ + Sbjct: 142 LRAVRAAV--QIPVTLKLRAGWDEASLNFIEAGQRAEAAGVAALTLHPRTREQGYKGQ-A 198 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVV-KYN 240 DW + +++ ++IPVI +G++ Q A + SG D VMIGRGA+ P + R V Sbjct: 199 DWSRVAALKRAVSIPVIGSGDVVTAQDALIRLRDSGADGVMIGRGAIANPWIFRQVADLR 258 Query: 241 EPRMPWPEVVA----LLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRV 296 + R P+ A LL +Y + + + +IKQ + + L V Sbjct: 259 QGRTPFEPTPADKYHLLLEYMAIYAEELPERLALNKIKQLIGQFYIGLPGSNHLRVAVHT 318 Query: 297 LNNSPDIARAIQAIDIEKL 315 + AI+ L Sbjct: 319 STSLAAAQEAIERFFAPYL 337 >UniRef50_D1BLD4 TIM-barrel protein, nifR3 family n=12 Tax=cellular organisms RepID=D1BLD4_VEIPT Length = 328 Score = 305 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 92/313 (29%), Positives = 144/313 (46%), Gaps = 17/313 (5%) Query: 4 LLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGT 63 +LAPM GV D R L E + L TE V + + H + Sbjct: 18 ILAPMAGVSDIAYRLLAKE-HGAALVCTEMVSAMGIKYKNERTHELL------RIEDVER 70 Query: 64 LVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGA 123 V +Q+ G P+ +A A G+ VD+N GCP K V SG G+ L+K+P+L + A Sbjct: 71 PVSMQIFGSNPEAIALGAKVVANAGADIVDINMGCPVKKVVTSGDGSALMKNPDLAARVA 130 Query: 124 KAMREAVPAHLPVSVKVRLGWDSGEKKF-EIADAVQQAGATELVVHGRTKEQGYRAEHID 182 +A +PV+VK+R+GWDS + A ++ G + VHGRTKEQ Y H D Sbjct: 131 EA--AVEAVDVPVTVKMRIGWDSDSINVVDFAKRIESTGVAAIAVHGRTKEQMYSG-HAD 187 Query: 183 WQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN-- 240 W I +++ +++PV+ NG+I + + A+Q + +GCDAVM+GRGA P + + + Sbjct: 188 WSYIKAVKEAVSVPVLGNGDIVEPEDAKQMLDETGCDAVMVGRGAQGNPWIFGRIHHYLA 247 Query: 241 ----EPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRV 296 P E + +L K+ L Q V I+ + K E+ V Sbjct: 248 TGEVLPGPTDIERLDMLLKHFDLLCQYKGEGMAVKEIRTHAGWYMKGLPESAYWRNRVNT 307 Query: 297 LNNSPDIARAIQA 309 + +++ Sbjct: 308 IQTVTSFHNELES 320 >UniRef50_C8W3U6 TIM-barrel protein, nifR3 family n=8 Tax=Clostridia RepID=C8W3U6_DESAS Length = 322 Score = 304 bits (779), Expect = 3e-81, Method: Composition-based stats. Identities = 84/314 (26%), Positives = 149/314 (47%), Gaps = 17/314 (5%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 RV+ APM G+ D R L E L TE + L + + L TP Sbjct: 12 RVISAPMAGITDRAYRILAKEAG-CGLVCTEMISDQALLYGNPKTNIL---LDCTGETP- 66 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + +Q+ G P+++A A+ G+ +D+N GCP+ + +G GA L++ PEL + Sbjct: 67 --PISMQIFGSSPEYMARAASITEARGASIIDINMGCPTPKIVKNGEGAALMRKPELAQK 124 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSG-EKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 + ++V +PV+VK+R GWD E+A ++AGA + VHGRT+ Q Y + Sbjct: 125 IISDVVQSV--RVPVTVKIRKGWDESFPNAVEMALLAEEAGAKAVTVHGRTRSQFYSGK- 181 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVV--- 237 DW I +++ + IPVI NG+I + + A + + +GCDAVMIGR +L P + Sbjct: 182 ADWDIIKSVKKAVTIPVIGNGDIREPRDAVRMLMHTGCDAVMIGRASLGNPWIFSSTVHF 241 Query: 238 ---KYNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHV 294 N P + +++ ++ L + + +++ ++ + EA + + + Sbjct: 242 LDCGENLPAPSPRQRLSVALRHLELLIELKGEYIAIREMRKHAAWYTRGLREANRIREKI 301 Query: 295 RVLNNSPDIARAIQ 308 + +I + Sbjct: 302 NRAVSLSEIRELLN 315 >UniRef50_C0GJW0 TIM-barrel protein, nifR3 family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GJW0_9FIRM Length = 319 Score = 303 bits (776), Expect = 6e-81, Method: Composition-based stats. Identities = 96/316 (30%), Positives = 150/316 (47%), Gaps = 17/316 (5%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 +V+LAP+ GV DS R L E+ L TE + + + L+ A T Sbjct: 11 KVILAPLAGVTDSSFRILAREMG-CALVFTEMISAKGAVCAPEQT------LKIARFTAQ 63 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + +QL G P+ A +D+N GCP K V G G G L++DP+ Y Sbjct: 64 ERPIGIQLFGSDPEIFARATELCNGQAPDLLDINMGCPVKKVAGKGEGCALMRDPDKAYA 123 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 KA+ +A A +PV+VK+R GWD E E+A AVQ+AGA + VHGRT+ QGY Sbjct: 124 ITKAVCDA--ATMPVTVKMRKGWDDSEVNAVEVALAVQEAGAAAVTVHGRTRAQGYSGR- 180 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSR----- 235 DW I +++ L +PV+ NG+IW+ Q AQ+ + +GCDAVM+ RG L L R Sbjct: 181 ADWSVIARVKEALRVPVVGNGDIWEPQDAQRMLQQTGCDAVMLARGVLGNLWLIRRTVHY 240 Query: 236 -VVKYNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHV 294 P E V L ++ ++ V +++ +++ K A ++ + Sbjct: 241 LETGELLPEPEMAERVRLACRHLKMVVDEKGEYMGVREMRKHMAWYLKGMRGAAQVRNEI 300 Query: 295 RVLNNSPDIARAIQAI 310 ++ ++ + Sbjct: 301 MRAKTKEEMTAILENL 316 >UniRef50_Q2LR94 TRNA-dihydrouridine synthase n=2 Tax=Deltaproteobacteria RepID=Q2LR94_SYNAS Length = 326 Score = 303 bits (776), Expect = 7e-81, Method: Composition-based stats. Identities = 90/321 (28%), Positives = 142/321 (44%), Gaps = 18/321 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 V+LAPM G+ + R + E L TE + + I Q Sbjct: 13 VILAPMAGISNLPFRMMAREAG-CALAFTEMISANGLV------RGIEKSQQYMKSCIDD 65 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 + VQ+ G P +A+ + G+ +DLN GCP K V +G GA LLKDP L+ Q Sbjct: 66 KPLGVQIFGNDPTTMADAVRIVDDYGADLIDLNMGCPVKKVVKNGAGAALLKDPGLVSQI 125 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 +++R+A P++VK+R GW+ +IA +Q G + VH RT QG+ A Sbjct: 126 LESVRKA--TRKPLTVKIRSGWNLQSINAVQIARIAEQQGIDAVFVHARTAVQGF-AGSA 182 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY-- 239 DW+ I +I+ + I VI NG++ A + + ++GCD VMIGRGAL P + Sbjct: 183 DWRIIEEIKNSVGIKVIGNGDVKSGADAWRMIKMTGCDGVMIGRGALGNPWIFNEALNYQ 242 Query: 240 ----NEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVR 295 E ++ ++ E V R ++ L + K V Sbjct: 243 STVQTHSEPVLNERKEMILRHLERETIFLGQKEAVKRFRKHLLWYTKGIRGGASFRSRVT 302 Query: 296 VLNNSPDIARAIQA-IDIEKL 315 +++ + R I+A D E++ Sbjct: 303 TISDQNLLLREIEAFFDQEEI 323 >UniRef50_Q3A324 Dihydrouridine synthase n=10 Tax=Desulfuromonadales RepID=Q3A324_PELCD Length = 342 Score = 302 bits (774), Expect = 9e-81, Method: Composition-based stats. Identities = 91/311 (29%), Positives = 150/311 (48%), Gaps = 17/311 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 +LLAPM G+ D R L+ L TE + +L + + TPS Sbjct: 31 ILLAPMAGITDLACRLLMRPYG-IGLAFTEMISANGLVLGGDATRDLL------ASTPSD 83 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 + +QL G+ P++L++ + G +DLN GCP K V SG G+ L++ P + Q Sbjct: 84 RPLGIQLFGENPKYLSQACKQVESHG-DLIDLNIGCPVKKVVRSGAGSALMQTPARVAQI 142 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGEKKF-EIADAVQQAGATELVVHGRTKEQGYRAEHI 181 AMR A HLP++VK+R GWD+ F EIA +Q G + +H RT+ QG+ Sbjct: 143 IAAMRRA--THLPLTVKIRAGWDASHINFLEIAHIAEQEGVDAITLHPRTRSQGFSGS-A 199 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVV---- 237 +W I ++++R IPVI +G+I++ Q AQ+ + +GCDAVMIGRG P L+R + Sbjct: 200 NWDLIAELKRRSTIPVIGSGDIFEAQYAQRMLQQTGCDAVMIGRGCYGNPWLARDILAMR 259 Query: 238 -KYNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRV 296 + E + ++ L + + V +++ L + K A + + Sbjct: 260 QGQTPAPVTPEERCDVALRHMELFLRFNDERKAVFDLRKHLCWYAKGLPGAAQFRSSINR 319 Query: 297 LNNSPDIARAI 307 + ++ + Sbjct: 320 AMSIEEMRTLV 330 >UniRef50_C1FNC8 Dihydrouridine synthase n=35 Tax=cellular organisms RepID=C1FNC8_CLOBJ Length = 323 Score = 302 bits (774), Expect = 9e-81, Method: Composition-based stats. Identities = 78/312 (25%), Positives = 137/312 (43%), Gaps = 17/312 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 V LAPM G D RE+ E+ L TE V +C + Sbjct: 12 VFLAPMAGFTDIAFREICKELG-CGLVYTEMVSAKALYYESNNTKELCV------ISNKE 64 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGV-DLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 V +QL G P+ +A + D+N GCP+ + +G G+ L+KDP+L + Sbjct: 65 KPVALQLFGHEPEIMANAVEFFNNNDDVCILDVNMGCPAPKIVKNGDGSALMKDPKLASE 124 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 KAM++ A P++VK R G+D E A ++Q+G + +HGRT+EQ Y + Sbjct: 125 IIKAMKKV--AKKPITVKFRKGFDKNNINAVEFAKIMEQSGVDAITIHGRTREQMYEGK- 181 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 DW I ++ ++IPVI NG+++ + A + + + CD +MIGRGA P + + + Sbjct: 182 ADWAIISKVKNSVSIPVIGNGDVFSSEDALEMINKTDCDGIMIGRGAQGNPWIFKQINEK 241 Query: 241 EPRMP-----WPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVR 295 E + + + + + V +++ ++ K T++ V Sbjct: 242 IKGEHVYYPTPQERIDICINHYKKSLEYFEEHKAVREMRKHVAVYVKGLKNCTDIKDKVN 301 Query: 296 VLNNSPDIARAI 307 + + + + Sbjct: 302 MEKDPDKVLEEL 313 >UniRef50_C6JNK3 Dihydrouridine-tRNA ligase n=4 Tax=Fusobacterium RepID=C6JNK3_FUSVA Length = 320 Score = 301 bits (772), Expect = 2e-80, Method: Composition-based stats. Identities = 84/316 (26%), Positives = 150/316 (47%), Gaps = 16/316 (5%) Query: 1 MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTP 60 +++ AP+ GV D R +L E DL TE V + + + ++ L+ Sbjct: 2 IKIYTAPIAGVTDYTYRGILKEF-KPDLLFTEMVSINALEVACEKTLKVILRLREGD--- 57 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 VQL G+ + + E+A LG +D+N GCP K + +G GA L++ PEL+ Sbjct: 58 -----SVQLFGKDIKKMVESAKFVESLGVKHIDINSGCPMKKIVNNGYGAALMEQPELVK 112 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 +R A+ +S+K+R+G+ + EIA Q+ G + +HGRT+EQ Y + Sbjct: 113 AMLSEVRSALNDKTDLSIKIRVGYKESKNPVEIAKIAQETGCKHITIHGRTREQMYTGK- 171 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK-Y 239 DW I ++++ ++IPVI NG+I+ + A++ + SG D +M+ RG P L R ++ Y Sbjct: 172 ADWSIIKEVKESVDIPVIGNGDIFTAEDAKERVDYSGVDGIMLARGIFGNPWLIRDIREY 231 Query: 240 NEPRMPWPEVVALLQKYTRLEKQGDTGLYHVAR-----IKQWLSYLRKEYDEATELFQHV 294 E V + + ++ T + H R +++ L + K E+ + Sbjct: 232 FEYGKILHPVTDIEKIDMAIKHTKRTEVEHPERPFIFELRKHLCWYLKGIRNTAEIKDKI 291 Query: 295 RVLNNSPDIARAIQAI 310 +N +I + + Sbjct: 292 NHTDNYNEIVELLNRV 307 >UniRef50_Q1IVR5 Dihydrouridine synthase TIM-barrel protein nifR3 n=2 Tax=Acidobacteria RepID=Q1IVR5_ACIBL Length = 370 Score = 300 bits (769), Expect = 3e-80, Method: Composition-based stats. Identities = 93/314 (29%), Positives = 147/314 (46%), Gaps = 15/314 (4%) Query: 4 LLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGT 63 +LAPM GV D++ R + + L +TEF + R + + + Sbjct: 35 VLAPMAGVTDTVFRRFIRNLGGCGLMMTEFTSADGLARMREAKAR-----RYLTFYGNER 89 Query: 64 LVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGA 123 + QL G + LA+ A +LG VDLN GCPSK V GG+ LL+D I Sbjct: 90 PISAQLFGSDAETLADAAKVVQDLGFDLVDLNLGCPSKRVVKCNGGSGLLRDLPQIKVIF 149 Query: 124 KAMREAVPAHLPVSVKVRLGWDSGEK-KFEIADAVQQAGATELVVHGRTKEQGYRAEHID 182 +++R+AV +P +VK R GW+ E E+A + G + +H RT+EQGY + + Sbjct: 150 ESVRKAV--TIPFTVKFRAGWNEKELVFLELAKLAENCGLNAVAMHARTREQGYSGQ-AN 206 Query: 183 WQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNEP 242 W I D++Q + IPVI NG+I + A +A +GCDAVMIGR A + P + R ++ Sbjct: 207 WGWIADLKQVVKIPVIGNGDIRTPEDAAAMVAKTGCDAVMIGRSAASNPWIFRQIEQYTA 266 Query: 243 RMPW-----PEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVL 297 + + +++ Y R+ + DT ++KQ+ S+ L + V Sbjct: 267 TGRYDLPTNEDRYEMIRMYFRMLIENDTQGAE-GKMKQFASWFTHGVPGGGVLRKAVYEA 325 Query: 298 NNSPDIARAIQAID 311 I A+ Sbjct: 326 KKRETILVAVDQFF 339 >UniRef50_B2A3T5 TIM-barrel protein, nifR3 family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A3T5_NATTJ Length = 327 Score = 300 bits (768), Expect = 6e-80, Method: Composition-based stats. Identities = 85/320 (26%), Positives = 150/320 (46%), Gaps = 21/320 (6%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 +++APM GV D R +L + + L E V + K + G Sbjct: 15 IIVAPMAGVTDYPYRRILAKFS-PGLICGEMVSAKGMVYGNKKTEEMVI------HHNQG 67 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 Q+ G P+ +A+ A + LG +D+N GCP+ + +G G+ LLK P L + Sbjct: 68 VHYSQQIFGSDPKVMADAAVKLENLGVDSIDVNMGCPAPKIVKNGEGSALLKKPHLAQEI 127 Query: 123 AKAMREAVPAHLPVSVKVRLGWD-SGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 + + +V +LPV+VK+R G+D E+A +Q+ G L VHGRT EQ Y + Sbjct: 128 VREIVNSV--NLPVTVKIRKGFDRKSSDPLELALRLQEVGIKALAVHGRTCEQQYSGK-A 184 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY-- 239 DW+ + ++ L+IPVI NG+I+ + A + ++ CD +M+GRG + P L K Sbjct: 185 DWEVVAKLKNYLDIPVIGNGDIFSSEDAVSALEMTACDGIMLGRGLMGNPWLIEQTKGML 244 Query: 240 -NEPRMPWPEVVAL---LQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVR 295 + ++ PE+ + ++ + + +A +++ +S+ K +T + V Sbjct: 245 IKDEKIESPEIHEIKNEMKSHFENAIKYYGESKGIAEMRKHISWYLKSLPGSTSIKDEVM 304 Query: 296 VLNNSPDI----ARAIQAID 311 L + I QA++ Sbjct: 305 RLTDVNQIWFSLNEYFQALE 324 >UniRef50_B0VH62 Dihydrouridine synthase family protein n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VH62_9BACT Length = 321 Score = 299 bits (766), Expect = 8e-80, Method: Composition-based stats. Identities = 77/311 (24%), Positives = 130/311 (41%), Gaps = 14/311 (4%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 + LAP+ G DS R++ ++ +E V LQ S Sbjct: 11 LFLAPLAGYSDSAFRQICKNWG-AEVLYSEMVSADGLTRNS------AKTLQYVQFDESE 63 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 +Q+ G P +A + L +D+N GCP K V G G+ L++ P L + Sbjct: 64 HPFGIQIFGSNPLIMARAVEVLLPLKPDFMDINMGCPVKKVIRKGAGSALMQTPSLAGKI 123 Query: 123 AKAMREAVPAHLPVSVKVRLGWD-SGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 K ++ A+ +P+SVK R GW+ + + +Q+ GA L +H RT Q + Sbjct: 124 VKEVKNALLGRIPLSVKFRSGWNFQNQNYLQFGLMLQECGADFLCLHPRTSSQMFSGTS- 182 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK--- 238 +W+ I ++Q + IPV+ NG+I + AQ+ + + CD +MIGRGAL P L + Sbjct: 183 NWEQIKILKQNVQIPVVGNGDIKTPEDAQRMITETNCDGIMIGRGALGKPWLFAQSRQLI 242 Query: 239 --YNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRV 296 + E+V + + + V ++ L + K EL + Sbjct: 243 STGTYNPVIQKEIVKTIFAHLDKALLYKSEDVVVREMRAHLCFYTKGILGGAELRNQINH 302 Query: 297 LNNSPDIARAI 307 N ++ I Sbjct: 303 TENISELKAII 313 >UniRef50_A6W1E8 Dihydrouridine synthase DuS n=1 Tax=Marinomonas sp. MWYL1 RepID=A6W1E8_MARMS Length = 335 Score = 299 bits (765), Expect = 1e-79, Method: Composition-based stats. Identities = 108/310 (34%), Positives = 175/310 (56%), Gaps = 5/310 (1%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 + +APMEGV+D +R LL++ D ++EF+RV +P F + PE N +RT Sbjct: 21 LAVAPMEGVMDHTMRALLSQTGGMDYLVSEFIRVTQYPIPAATFKHLVPENTNKARTTHN 80 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 V QLLG + +AE+A A + G+ +D+N GCP+K VNG GGG+ LL+ P+ +Y Sbjct: 81 HPVHTQLLGSNAELMAESALNATKAGAKHIDVNFGCPAKRVNGHGGGSVLLQTPDALYDI 140 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHID 182 A+R+ +P+ +PVS K+RLG++ F+ A++ AG L +HGRTK+ GY+ Sbjct: 141 MSAIRDTLPSDIPVSAKIRLGFEDEALLFDNVAAIEAAGVGTLTIHGRTKKDGYK-PPAR 199 Query: 183 WQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK---- 238 W+ IG+I+ + + V+ANG+I D +S +C +I+GC MIGRG+LN P + + ++ Sbjct: 200 WEKIGEIQAKTKMTVVANGDITDTKSLLRCQSITGCQHFMIGRGSLNNPFVFQQIRKELN 259 Query: 239 YNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLN 298 E + L Y+R ++ + + R+KQW +LR E+ E E Q +R Sbjct: 260 GQESTADTTNLNRLFISYSRELQEHYDEVAALGRLKQWCGHLRFEFKEIKENLQTLRRCK 319 Query: 299 NSPDIARAIQ 308 + ++ Sbjct: 320 SVNELISTFN 329 >UniRef50_B0S217 Nitrogen regulation protein n=3 Tax=Clostridiales Family XI. Incertae Sedis RepID=B0S217_FINM2 Length = 305 Score = 296 bits (759), Expect = 5e-79, Method: Composition-based stats. Identities = 73/313 (23%), Positives = 137/313 (43%), Gaps = 16/313 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 + LAP+ GV D R L E+ LC TE + K ++ P Sbjct: 7 LFLAPLAGVTDIPFRILCGELG-AGLCFTEMISAKGLYYDDKKTKKLL------DTDPRE 59 Query: 63 TLVRVQLLGQFPQWLAENAARAVELG-SWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 VQ+ G P+ +A E +D+N GCP+ + +G G+ L+ D L Sbjct: 60 KSTSVQIFGHEPEIIAYATRFLTENYNFKSIDINMGCPAPKIFKNGDGSALMGDLNLAED 119 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKKF-EIADAVQQAGATELVVHGRTKEQGYRAEH 180 +A + LPVSVK RLG D + ++A ++ + +H RT++ Y E Sbjct: 120 VIRACKNN--TDLPVSVKFRLGIDENSMNYMQLAQICERLKVDYITLHARTRKMFYSGE- 176 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 DW I + + ++IPV NG+ + + ++ M S CD V++ RGA+ P + + Sbjct: 177 ADWLHIKRVVENVDIPVFGNGDCFTKEDIRKNMEYSNCDGVLLARGAMQNPFIFS----D 232 Query: 241 EPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNNS 300 + EV+ ++K+ +L+ + + +++ + + K + + ++ + L + Sbjct: 233 DENKSKEEVIDTIKKHMQLKLEFYEERRAILEMRKHIQWYLKGFRNSNKVKNKINQLTDL 292 Query: 301 PDIARAIQAIDIE 313 +I + + E Sbjct: 293 DEIYKILDEFKNE 305 >UniRef50_UPI0001BC5FF0 nitrogen regulation protein NIFR3 n=1 Tax=Fusobacterium sp. D12 RepID=UPI0001BC5FF0 Length = 322 Score = 296 bits (758), Expect = 7e-79, Method: Composition-based stats. Identities = 84/315 (26%), Positives = 149/315 (47%), Gaps = 16/315 (5%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 ++ +AP+ GV D R +L E DL TE V L++ + Sbjct: 3 KIFIAPIAGVTDYTYRGILEEFQ-PDLLFTEMVSSDALAALNDKTISQILRLRSGN---- 57 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 VQL G+ + + +A +LG +D+N GCP K V SG G+ LLK PE I + Sbjct: 58 ----GVQLFGKDTEKMIYSAKYIEKLGVKNIDINAGCPMKRVVHSGHGSALLKSPEKIKE 113 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 +RE + +S+K+R+G+D E +IA ++AG + + VHGRT+ Q Y Sbjct: 114 ILFTLREQLEESTKLSIKIRVGYDRPENYLQIAKIAEEAGCSHITVHGRTRAQLYTG-LA 172 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK--- 238 DW I +I++ + IPVI NG+I+ ++A++ + SG D VM+ RG P L R ++ Sbjct: 173 DWSLIKEIKEHVTIPVIGNGDIFTAEAAKEKIEDSGVDGVMLARGIFGNPWLIRDIREML 232 Query: 239 -YNE--PRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVR 295 Y E ++ + + + + ++ + V +++ + + K + E + Sbjct: 233 QYGEVKTKVSTEDKIDMAIHHILKTEEDNPQREFVFDVRKHICWYLKGIPHSAEYKNRIN 292 Query: 296 VLNNSPDIARAIQAI 310 + + + +Q + Sbjct: 293 QSTDYKAVVQLLQEL 307 >UniRef50_A0Q6L0 TRNA-dihydrouridine synthase n=19 Tax=Francisella RepID=A0Q6L0_FRATN Length = 328 Score = 295 bits (756), Expect = 1e-78, Method: Composition-based stats. Identities = 89/316 (28%), Positives = 144/316 (45%), Gaps = 19/316 (6%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 V+LAPM G DS R + E + L TE V V R ++ S Sbjct: 14 VVLAPMAGFCDSAFRTICKE-HGAGLIYTEMVS------NKAVVERNWETMEMLYMENSE 66 Query: 63 TLVRVQLLGQFPQWLAENAARAVELG-SWGVDLNCGCPSKTVNGS-GGGATLLKDPELIY 120 + +Q+ G E +D+N GCP V GA LLKD I+ Sbjct: 67 KPLGIQIFGTDIDSFVGATKYIAENTECDFLDINMGCPMPKVAKKLQAGAALLKDVNRIH 126 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRAE 179 + A+ +AV H PV+VK+R+GWD E+A A + AG + + +HGRT+EQ Y + Sbjct: 127 EILTAVVKAV--HKPVTVKMRIGWDDKNINAIEVAKACEDAGVSAIAIHGRTREQMYTGK 184 Query: 180 HIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY 239 +W I D+R+ ++I VI NG+++ SA+ + +G DAVM+GR + P + R + Sbjct: 185 -ANWDIIRDVRKAVDIVVIGNGDVFCPHSAKAMIEHTGVDAVMVGRASRGNPWIFRQIAK 243 Query: 240 NE------PRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQH 293 P E V +L+++ R + T V I+ S+ ++ + E Sbjct: 244 YLNTGELIPPPTPVERVDVLEEHLRRLIKLKTAKVAVKEIRTHASFYLQDLPNSKEFRMK 303 Query: 294 VRVLNNSPDIARAIQA 309 + L + +I + ++ Sbjct: 304 LNQLEHEQEIFKILEE 319 >UniRef50_A6DPY9 Putative uncharacterized protein n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DPY9_9BACT Length = 330 Score = 295 bits (755), Expect = 2e-78, Method: Composition-based stats. Identities = 93/320 (29%), Positives = 149/320 (46%), Gaps = 16/320 (5%) Query: 1 MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTP 60 ++ LAPMEGV L+R + + DL TEF+R+ ++ + + Sbjct: 7 FKLSLAPMEGVTHPLMRHQIAQHGGLDLLCTEFIRISSHKPSMRSLKKQIVK-------S 59 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 + VQ++G + +AE+A V+ G+ VD+N GCP+K G G+ +LKDP+L Y Sbjct: 60 GDIPLSVQIMGNNAELMAESAKLVVDCGADAVDVNMGCPTKRAVKGGVGSAMLKDPKLCY 119 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 Q +MRE VP L S K+R G+D+ E FEI A+ +GA L VH R + Y H Sbjct: 120 QVLASMREQVPCAL--SAKIRAGFDNKEGVFEILQAIVDSGADYLAVHPRRRVDHYEG-H 176 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY- 239 DW+ I ++++ IPVI NG++ A + + CD VMIGRGAL+ P + Sbjct: 177 SDWRIISALKEKSPIPVIGNGDVRTAADAVRMFKETQCDGVMIGRGALSNPWIFLQTSQV 236 Query: 240 -NEPRMPWPEVVALLQKYT----RLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHV 294 ++ + P + Y D + + K+ L Y E + + Sbjct: 237 LSDQEVFIPNWEDIYHFYHGIAQAFSDFCDNEQGTLNKTKEMLMYFSVNLPEPAPFRKAI 296 Query: 295 RVLNNSPDIARAIQAIDIEK 314 + ++ + + EK Sbjct: 297 GRSQSIDEMMNKLHSFLKEK 316 >UniRef50_A9NE09 tRNA-dihydrouridine synthase n=2 Tax=Mollicutes RepID=A9NE09_ACHLI Length = 336 Score = 295 bits (755), Expect = 2e-78, Method: Composition-based stats. Identities = 89/322 (27%), Positives = 149/322 (46%), Gaps = 18/322 (5%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 +++LAPM GV + R + ++ + E V +F + LQ T Sbjct: 13 KLILAPMAGVSNHPFRLMARQLG-AGVVFAEMVS------DKAIFFQNPKTLQMLYMTVE 65 Query: 62 GTLVRVQLLGQFPQWLAENAA-RAVELGSWGVDLNCGCPSKTV-NGSGGGATLLKDPELI 119 Q+ G + + E A +D+N GCP V G+ GA+L+KDP+ I Sbjct: 66 EKPAAQQIFGSDLETMVEAAMFIDKNSNCDFIDINMGCPVPKVAIGAQAGASLMKDPQKI 125 Query: 120 YQGAKAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRA 178 Y KA++E V PV+VK+R GWDS E+A +++AGA+ + VH RT+ QGY Sbjct: 126 YDIVKAIKEKVSK--PVTVKIRSGWDSESVNAVEVAKMIEKAGASLITVHARTRAQGYSG 183 Query: 179 EHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK 238 E D I +++ ++IPVI NG I D +SA+ + +GCDAVMIGR +L P + R + Sbjct: 184 EP-DLDVIKAVKEAVSIPVIGNGNIVDGKSAKHMLEYTGCDAVMIGRASLGNPWIFREIN 242 Query: 239 -----YNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQH 293 P + EV L+ ++ + ++ + K +A+++ Sbjct: 243 AYLNGEETPVRTYEEVKTLMIRHFDDLAKLKGEHTACLEMRSHGPWYLKGLPKASQVRAK 302 Query: 294 VRVLNNSPDIARAIQAIDIEKL 315 + N + ++ + + Sbjct: 303 LARTTNRAEYMENLEMYFDDVM 324 >UniRef50_B0TBQ2 Dihydrouridine synthase tim-barrel nifr3 family protein n=3 Tax=Clostridiales RepID=B0TBQ2_HELMI Length = 331 Score = 292 bits (748), Expect = 1e-77, Method: Composition-based stats. Identities = 88/314 (28%), Positives = 143/314 (45%), Gaps = 17/314 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 V+ APM GV D R +L E + L TE + + ++ T Sbjct: 20 VVAAPMAGVTDKPFRTVLKE-HRCPLVYTEMISDKALTYANRNT------MEILDITGEA 72 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 + VQ+ G P +AE A G+ +D+N GCP+ + +G GA LLK P+L Sbjct: 73 RPIAVQIFGSEPAVMAEAARIVEAAGASIIDINMGCPAPKIVRNGEGACLLKTPDLAVDI 132 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGEK-KFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 A+A+ AV +PV+VK+R+GW SG E+A ++ G L VHGRT+E Y + Sbjct: 133 AEAVVRAV--QVPVTVKMRIGWSSGRIVAPELAPRLEAVGVQALTVHGRTREMFYSGQ-A 189 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNE 241 DW I + ++++IPVI NG++W+ A + + +GC AVMIGRG + P + + + Sbjct: 190 DWSVIAETVRQVSIPVIGNGDVWEPDDALRMLVETGCAAVMIGRGCMGNPWIFSRLVHWA 249 Query: 242 PRMPWPEVVALLQK------YTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVR 295 P + ++ + V ++ LS+ K A+ L + Sbjct: 250 ETGEMPPPPSPEERINQALLHLEHIVALKGEERGVREMRGHLSWYLKGIRGASRLRAEIN 309 Query: 296 VLNNSPDIARAIQA 309 + + R + Sbjct: 310 QAPDRESVVRLLTE 323 >UniRef50_C1F4Z7 Putative tRNA-dihydrouridine synthase n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F4Z7_ACIC5 Length = 398 Score = 290 bits (744), Expect = 3e-77, Method: Composition-based stats. Identities = 92/346 (26%), Positives = 151/346 (43%), Gaps = 44/346 (12%) Query: 4 LLAPMEGVLDSLVRELLT---------------------EVNDYDLCITEFVRVVDQLLP 42 +LAPM GV D++ R + + + L +TEF Sbjct: 35 VLAPMAGVTDTVFRRFIRNASLFAEGGAGAANVDREVTNQQSGCGLIMTEFTSADGLSKM 94 Query: 43 VKVFHRICPELQNASRTPSGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKT 102 + + + + + QL G P+ LAE A + G VDLN GCP+K Sbjct: 95 RESKRK-----RYLTFYEDEHPIAAQLFGSNPETLAEGARIVEDTGFDMVDLNLGCPAKR 149 Query: 103 VNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVSVKVRLGWDSGEKK-FEIADAVQQAG 161 V GG+ LL+D LI + +A+R AV +P +VK RLGW+ +A +++G Sbjct: 150 VVACNGGSGLLRDLPLIAKIFEAVRGAV--KIPFTVKFRLGWNDQHIICVPLARLAEESG 207 Query: 162 ATELVVHGRTKEQGYRAEHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAV 221 + +H RT+EQGY + W+ I +++ + IPVI NG++ + A +A +GCD V Sbjct: 208 LNAVSLHARTREQGYSGQ-ARWEHIAEVKDAVRIPVIGNGDVRTPEDACALVAKTGCDGV 266 Query: 222 MIGRGALNIPNLSRVV-------KYNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVAR-- 272 MIGR A P + R + +Y+EP + +++ Y + H +R Sbjct: 267 MIGRAAPANPWIFRQIAQYTATGRYDEPSEA--DRYQMIRTYFEMLLDEGREDEHASRAA 324 Query: 273 ---IKQWLSYLRKEYDEATELFQHVRVLNNSPDIARAIQAIDIEKL 315 +KQ+ S+ L + + P I A++ +L Sbjct: 325 EGKMKQFASWFTHGVPGGAGLRKSIYEAKTGPKILDAVERFFETRL 370 >UniRef50_C7RGQ7 TIM-barrel protein, nifR3 family n=4 Tax=Anaerococcus RepID=C7RGQ7_ANAPD Length = 326 Score = 290 bits (742), Expect = 6e-77, Method: Composition-based stats. Identities = 76/315 (24%), Positives = 147/315 (46%), Gaps = 18/315 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 ++LAPM G+ DS R++ E N D TE V V + I S Sbjct: 10 IMLAPMAGITDSAFRQICEE-NGCDKTFTEMVSVNALDFNNRATEEIMYTAY------SE 62 Query: 63 TLVRVQLLGQFPQWLAENAARAVEL--GSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 +Q+ G+ + + + N GCP+ + +G G+ L++D + +Y Sbjct: 63 KNCNIQIFGKDCDIIERVIKDKINPREDFEEISFNMGCPAPKIFNNGQGSALMRDVKKVY 122 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRAE 179 + K ++E V+VK+R+G D E+ A++ +G +++HGRT++Q Y + Sbjct: 123 EIGKCLKE--STDKIVNVKIRMGIDDDSVNYIEVGKALEDSGIDYVILHGRTRKQQYSGK 180 Query: 180 HIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK- 238 +WQAI +++ L+IPVIANG+++ + + + +G D VMI RGA+ P + R +K Sbjct: 181 -ANWQAIRKLKETLSIPVIANGDVFSVKDYKDILDETGADGVMIARGAMGNPFIFRQIKD 239 Query: 239 ----YNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHV 294 + + +++A +++ L + + ++++ + + K +A V Sbjct: 240 YIQGKETSPISYEDILATIKRQYELSLKYKKEKLVINQMRKHVGWYIKGLPQAASYRDRV 299 Query: 295 RVLNNSPDIARAIQA 309 L S +I ++ Sbjct: 300 NKLKTSEEIFDLLEE 314 >UniRef50_C7PIH0 TIM-barrel protein, nifR3 family n=7 Tax=Bacteroidetes RepID=C7PIH0_CHIPD Length = 354 Score = 290 bits (742), Expect = 6e-77, Method: Composition-based stats. Identities = 89/317 (28%), Positives = 138/317 (43%), Gaps = 19/317 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 +LLAPME V D R + E DL TEF+ + R Sbjct: 14 LLLAPMEDVSDPPFRAVCKEKG-ADLMYTEFISSEGLIRDAIKSRRKLDIFDY------E 66 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 V +Q+ G + +A A +D+N GCP K V G G+ +LKD + + Sbjct: 67 RPVGIQIFGGDEEPMAMAAQIVEATNPDLLDINYGCPVKKVVCKGAGSGILKDIPKMVKL 126 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGEKKF-EIADAVQQAGATELVVHGRTKEQGYRAEHI 181 A+ +A LPV+VK RLGWD K E+A+ +Q G L +HGRT+ Q Y+ H Sbjct: 127 TAAVVKA--TKLPVTVKTRLGWDDDTKNIEEVAERLQDVGIQALTIHGRTRTQMYKG-HA 183 Query: 182 DWQAIGDIRQ--RLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY 239 DW IG ++ R++IP+ NG+I + A G D VMIGR A+ P + +K+ Sbjct: 184 DWTLIGKVKNNPRIHIPIFGNGDICTPEQAIAAREKYGVDGVMIGRAAIGYPWIFNEIKH 243 Query: 240 ------NEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQH 293 + P E V + +K+ + Q + + +++ + K E Q Sbjct: 244 FMQTGEHLPPPSVLERVEVCKKHLQHSVQWKGDVVGILEMRRHYTNYLKGLPHIKEFRQQ 303 Query: 294 VRVLNNSPDIARAIQAI 310 + + + + AI Sbjct: 304 LVTCSTLAAVEDVLDAI 320 >UniRef50_C2KYD0 Dihydrouridine synthase n=4 Tax=Bacteria RepID=C2KYD0_9FIRM Length = 344 Score = 289 bits (741), Expect = 6e-77, Method: Composition-based stats. Identities = 82/315 (26%), Positives = 137/315 (43%), Gaps = 18/315 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 +L+APM GV D R L E+ L TE V + + Sbjct: 41 ILMAPMAGVTDLPYRILCKEMG-LSLSFTEMVSAKAIYYGNQNTDSLLV------HKGEP 93 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 LV QL G P +AE A R E G+D+N GCP V + G+ L+ + L Q Sbjct: 94 GLVSAQLFGSDPALMAEMACRIEE-DFDGIDVNMGCPVPKVVRNQEGSALMTNLPLAEQV 152 Query: 123 AKAMREAVPAHLPVSVKVRLGW-DSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 M +A+ P++VK R+G+ D E A + +G + +HGRT+EQ YR + Sbjct: 153 LSTMAKALKK--PLTVKFRIGFTDDAINVVEFAKMAEASGVASVTIHGRTREQYYRGK-A 209 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRV----- 236 +WQ I + ++ + IPV NG+I+ + A + +G D V + RG P L R Sbjct: 210 NWQYIKEAKEAVKIPVFGNGDIFQEEDALAMLLSTGVDGVALARGIQGNPFLIRACVSLL 269 Query: 237 -VKYNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVR 295 P + E ++ ++ +L + + +++ LS+ + + A Q V Sbjct: 270 SEGKKLPPVSLSERKEMMLRHLKLMVEIKGEHLALLEMRKHLSWYMEGLENAARWRQRVN 329 Query: 296 VLNNSPDIARAIQAI 310 N+ + + ++ + Sbjct: 330 TENDLEKVFQMVREL 344 >UniRef50_Q090Q9 TRNA-dihydrouridine synthase B n=2 Tax=Cystobacterineae RepID=Q090Q9_STIAU Length = 369 Score = 289 bits (741), Expect = 7e-77, Method: Composition-based stats. Identities = 82/308 (26%), Positives = 139/308 (45%), Gaps = 13/308 (4%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS- 61 +LAPM GV + R + + LC TE V + + L+ +P Sbjct: 45 YILAPMAGVSERPFRVIAFKWGAA-LCPTELVSAQGLMRANQRT------LKYLRFSPEV 97 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 +Q+ G P+ +A+ A G+ +D+N GCP K V +G G+ L+ +P + Sbjct: 98 ERPYSLQIFGGEPEAMAQAALVGKAHGAQIIDINMGCPVKKVTKNGAGSALMCEPLRAAR 157 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKKF-EIADAVQQAGATELVVHGRTKEQGYRAEH 180 +A+ EA LPV+ K+R GWD+ + + ++A + AG L +H RT++QGY Sbjct: 158 IVQAIAEA--TGLPVTCKIRSGWDAHHRNYLQMAGELFSAGCAALAIHPRTRDQGYSG-F 214 Query: 181 IDWQAIGDIRQRL-NIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY 239 DW I D+++ + +I NG++ A++ +GCD VMIGRGAL P + R + Sbjct: 215 ADWSVIADLKRHFPDRTLIGNGDVKTPADARRMRETTGCDFVMIGRGALGNPWIFRELAG 274 Query: 240 NEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNN 299 P P +L+ + + L V ++ +++ A V L Sbjct: 275 GPPPTPEERCAGVLEHFRAHVEFVGEPLGAVRSFRRHMAWYAHGLHGAAAFRAEVNTLET 334 Query: 300 SPDIARAI 307 + A+ Sbjct: 335 PASVEDAV 342 >UniRef50_C1A3V7 Putative tRNA-dihydrouridine synthase n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A3V7_GEMAT Length = 349 Score = 288 bits (737), Expect = 2e-76, Method: Composition-based stats. Identities = 83/311 (26%), Positives = 140/311 (45%), Gaps = 19/311 (6%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 + LAPM GV +S R L + D+ +TEF+ + + P Sbjct: 16 LYLAPMAGVSESPFRRLC-HAHGADVVVTEFLSAEG------IRRENEATISKLRFAPEE 68 Query: 63 TLVRVQLLGQFPQWLAENAARAVELG-SWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + VQ+ G P +A+ AA ++ VD+N GCP K V GG+ LKD +L+ + Sbjct: 69 RPIGVQIFGSEPSAMADAAALVTDMFSPDFVDINFGCPVKKVVRRNGGSGCLKDLDLVEE 128 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSG-EKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 +A+ +A P LPV+VK R GW+ IA +Q AGA +H RT+ Q Y Sbjct: 129 IIRAVSKATP--LPVTVKTRSGWNEEMRDPVGIALRMQDAGAKVFALHARTRTQMYSGS- 185 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 +W I + + L+IPV+ NG+I A++ + + D +MIGRG+ P + + + Sbjct: 186 ANWDEIARVAEALDIPVLGNGDIKTALDAKRMLDHTKADGIMIGRGSYGQPWVFKQTRAL 245 Query: 241 EPRMPWP------EVVALLQKYTRLEKQGDT-GLYHVARIKQWLSYLRKEYDEATELFQH 293 P P E A+ + R+ + + + ++ L + K + EL Sbjct: 246 IDGTPVPETPGVQERFAIALDHARMVQGYEVDAIGAALEFRKHLGWYVKGLPNSAELRAK 305 Query: 294 VRVLNNSPDIA 304 + + + ++ Sbjct: 306 LHQVRDFAEVE 316 >UniRef50_Q1RH84 Probable tRNA-dihydrouridine synthase n=59 Tax=Alphaproteobacteria RepID=DUS_RICBR Length = 326 Score = 287 bits (735), Expect = 3e-76, Method: Composition-based stats. Identities = 84/314 (26%), Positives = 157/314 (50%), Gaps = 20/314 (6%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 ++LAPM GV D R L+ L ++E + ++ + + C +Q+ + + Sbjct: 13 IILAPMSGVTDLEFRRLVKRFG-AGLVVSEMIASRAMIVESRQSLQKCSIMQDDATSAC- 70 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 VQL G P +AE A ++G+ +DLN GCP+K V G+ L++D L + Sbjct: 71 ----VQLAGCEPNVIAEAAKMNEDMGAKIIDLNFGCPAKKVVNGYSGSALMRDEGLAAKI 126 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSG-EKKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 +A +AV +PV+VK+R+GWD + +A +++G + VHGRT+ Q Y + Sbjct: 127 FEAAVKAV--KIPVTVKMRMGWDDQTKNAPTLAKIAERSGIQMVTVHGRTRCQFYSG-NA 183 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY-- 239 DW+ I ++++ + IPVIANG+I ++ A++ + S D VM+GRGA P L + + Sbjct: 184 DWEFIKNVKEAVKIPVIANGDITNFAKAKEALEKSSADGVMVGRGAYGKPWLISQIDHYL 243 Query: 240 ----NEPRMPWPEVVALLQKYTR--LEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQH 293 +P + ++ ++ + ++ G++ +AR + + + + E Sbjct: 244 KTGEEKPAPSIESQLDIVLEHYQAIVDYYGESAGVPIAR--KHMGWYSSGLPNSAEFRGA 301 Query: 294 VRVLNNSPDIARAI 307 V ++N+ + I Sbjct: 302 VNLMNDPIAVKDKI 315 >UniRef50_D0LJX3 TIM-barrel protein, nifR3 family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LJX3_HALO1 Length = 348 Score = 287 bits (735), Expect = 3e-76, Method: Composition-based stats. Identities = 96/320 (30%), Positives = 151/320 (47%), Gaps = 21/320 (6%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 VLLAPM V D R + L ITEF++ + R Sbjct: 18 VLLAPMAAVTDLPFRTICERFG-VGLTITEFLKATALCDGDAEVVDKLTASLDGVR---- 72 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 VQ+ G+ + L + A A+++G+ +D+N GCP+K V GA L++ PEL + Sbjct: 73 --FGVQIYGREVEPLVQAAQLALDIGASLIDINMGCPAKRVVAGECGAALMQWPELSAEL 130 Query: 123 AKAMREAVPAHLPVSVKVRLGWDS-GEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 +A+ +VP +PV+VK R GW+ E A A+ +AGA + VHGRT+ QG+ A + Sbjct: 131 VRAVVASVPDSVPVTVKHRAGWNPLNRNAPEFACAMVEAGAQMVTVHGRTRTQGF-AGSV 189 Query: 182 DWQAIGDIRQRL--NIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY 239 D + I +R+ + +PV+ NG++ + +GCDAVMIGRGAL P L R + Sbjct: 190 DLEVIRRVREAVPARVPVVGNGDVVCVDDYLRMREHTGCDAVMIGRGALGNPWLFRSLHA 249 Query: 240 NEPRMPWPEVVALLQKYTRLEK--------QGDTGLYHVARIKQWLSYLRKEYDEATELF 291 +P P + ++Y + +G L H +++ ++ K D A Sbjct: 250 LAHGLPDPGRPDMAERYRVFCEHVALLYALKGGPKLIH--EVRKACAWYAKGLDGADGFR 307 Query: 292 QHVRVLNNSPDIARAIQAID 311 QHV L + ++ A A Sbjct: 308 QHVWKLRSPDEVLVAAAAFF 327 >UniRef50_P37567 Probable tRNA-dihydrouridine synthase 1 n=19 Tax=Bacilli RepID=DUS1_BACSU Length = 333 Score = 287 bits (734), Expect = 4e-76, Method: Composition-based stats. Identities = 88/320 (27%), Positives = 143/320 (44%), Gaps = 18/320 (5%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 RV+LAPM GV +S R + E L E V L R L R Sbjct: 12 RVVLAPMAGVCNSAFRLTVKEFG-AGLVCAEMVSDKAILYNNA---RTMGMLYIDER--- 64 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELG-SWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 + +Q+ G + L E A + + +D+N GCP + GA L DP+ IY Sbjct: 65 EKPLSLQIFGGKKETLVEAAKFVDQNTTADIIDINMGCPVPKITKCDAGAKWLLDPDKIY 124 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEK-KFEIADAVQQAGATELVVHGRTKEQGYRAE 179 + A+ +AV + PV+VK+R+GWD + A AV++AG + +HGRT+ Q Y Sbjct: 125 EMVSAVVDAV--NKPVTVKMRMGWDEDHIFAVKNAQAVERAGGKAVALHGRTRVQMYEGT 182 Query: 180 HIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPN-LSRVVK 238 +W I +++Q ++IPVI NG++ Q A++ + +G D VMIGR AL P + R V+ Sbjct: 183 -ANWDIIKEVKQSVSIPVIGNGDVKTPQDAKRMLDETGVDGVMIGRAALGNPWMIYRTVQ 241 Query: 239 YNEPRMPWP-----EVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQH 293 Y E E +A+ + + V +++ ++ K + Sbjct: 242 YLETGKLKEEPQVREKMAVCKLHLDRLIDLKGENVAVREMRKHAAWYLKGVKGNANVRNE 301 Query: 294 VRVLNNSPDIARAIQAIDIE 313 + + + + A +E Sbjct: 302 INHCETREEFVQLLDAFTVE 321 >UniRef50_A0LJ96 Putative TIM-barrel protein, nifR3 family n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LJ96_SYNFM Length = 352 Score = 286 bits (733), Expect = 6e-76, Method: Composition-based stats. Identities = 89/313 (28%), Positives = 145/313 (46%), Gaps = 22/313 (7%) Query: 6 APMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGTLV 65 APM GV DS R L+ + + TE V + + + +C + + P G + Sbjct: 27 APMAGVTDSAYRALMADFGAA-MVTTEMVSIQGLVRNQRATLDLCRQ-----QHPVGVPL 80 Query: 66 RVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKA 125 VQ+ G+ P +AE A + G+ +D+N GCP + V G GA LLKDP+ + +A Sbjct: 81 AVQVFGRDPAVMAEAARLVEQGGAALIDINAGCPVRKVVRQGAGAILLKDPDRLAAMVEA 140 Query: 126 MREAVPAHLPVSVKVRLGWDSGEKKFE-IADAVQQAGATELVVHGRTKEQGYRAEHIDWQ 184 ++ AV +PV+VK+R+GWD+ +A + AG + VHGRT Q Y DW Sbjct: 141 VKRAVS--VPVTVKIRVGWDNAANGVAGLARQLVSAGVDAITVHGRTAAQMYSGR-ADWS 197 Query: 185 AIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNEPRM 244 I +++ + +PVI NG++ + A++ + +GCD VMIGR +L P L V+ R Sbjct: 198 RIAEVKAAVAVPVIGNGDVTSPELAERMIHETGCDGVMIGRASLGNPWLFAVISRRWGRG 257 Query: 245 P-------WPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVL 297 W + + + + LE +K+ L + K ++ L + Sbjct: 258 ARQGDCPGWNDFLRTAEAH--LESFRTMRPRADGHLKKLLIWYSKGCPDSAGLR---CRI 312 Query: 298 NNSPDIARAIQAI 310 I + A Sbjct: 313 AGPDGIESMLAAF 325 >UniRef50_Q6F288 TRNA dihydrouridine synthetase n=3 Tax=Mollicutes RepID=Q6F288_MESFL Length = 325 Score = 286 bits (732), Expect = 7e-76, Method: Composition-based stats. Identities = 84/320 (26%), Positives = 144/320 (45%), Gaps = 23/320 (7%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 +++ PM GV + R L+++ DL E V V K + Sbjct: 11 KLVQGPMAGVSNPPFR-LISKEKGADLVCAEMVSVEGMTHNNKKT------FSMLAVEKK 63 Query: 62 GTLVRVQLLGQFPQWLAENAARAVEL-GSWGVDLNCGCPSKTV-NGSGGGATLLKDPELI 119 + +Q+ G + E +DLN GCP+ V S G++LLK PELI Sbjct: 64 EHPMSMQIFGNDVESFIVATKWIDENVDCDIIDLNIGCPAPKVAVRSASGSSLLKTPELI 123 Query: 120 YQGAKAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRA 178 Y KA+ E PV+ K+RLGWD E++ +++AGA+ + VHGRT+ + Y Sbjct: 124 YDIVKAVVENTSK--PVTAKIRLGWDKESVNAVEVSKLIEKAGASGITVHGRTRSEFYSG 181 Query: 179 EHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK 238 H DW+ I ++++ +NIPVI NG++ D SA+ + ++GCD VMI RG P + R + Sbjct: 182 -HADWEKIKEVKEAVNIPVIGNGDVIDGPSAKAMLELTGCDGVMISRGCQGNPWIFREIA 240 Query: 239 Y------NEPRMPWPEVVALLQKYTRLEKQGD-TGLYHVARIKQWLSYLRKEYDEA---T 288 + + + E + K+ ++ + ++ L++ + Sbjct: 241 HFLETGEELDKPSFAEWKETVLKHAKMLIDYKQDEGSAIREFRKHLTWYFAALPKTEILN 300 Query: 289 ELFQHVRVLNNSPDIARAIQ 308 +L + +N D+ I+ Sbjct: 301 QLKEEANKINTFSDLENIIE 320 >UniRef50_Q1QZQ6 Dihydrouridine synthase, DuS n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QZQ6_CHRSD Length = 340 Score = 285 bits (731), Expect = 1e-75, Method: Composition-based stats. Identities = 135/314 (42%), Positives = 185/314 (58%), Gaps = 9/314 (2%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNAS-RTP 60 R+ LAPMEGV+D + RELL+ D +TEFVRVVD LP +VF R CPEL+ A+ T Sbjct: 8 RIGLAPMEGVIDVVTRELLSADGALDWTVTEFVRVVDTRLPARVFLRHCPELETAACATA 67 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 SGT V +QLLG P+ LA NA RA LG+ VDLN GCP+KTVN GGA+LL+ PE ++ Sbjct: 68 SGTPVHLQLLGSDPEALAANAVRAQALGARQVDLNFGCPAKTVNRHDGGASLLRQPERVH 127 Query: 121 QGAKAMREAV-PAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAE 179 +A+ EA+ P + V+ K+RLG+D A+A + GA LVVH RT+ +GYR Sbjct: 128 TVVRAVAEALAPLGIAVTAKIRLGFDDKHVALACAEAAESGGAAHLVVHARTRREGYR-P 186 Query: 180 HIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY 239 W+ IG I+ RL+IPVIANG+IW + + +SGC VM+GRG L P L+R +K+ Sbjct: 187 PAHWEWIGRIQARLSIPVIANGDIWTLEDYWKARTLSGCADVMLGRGMLADPWLARRIKH 246 Query: 240 NE------PRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQH 293 + P PW +L Y + + V+ +KQWL+ +R ++EA F Sbjct: 247 WQRHGEMLPATPWSARAEILHAYAQRMRAHLPEKVVVSLLKQWLNQMRGRHEEAARRFAA 306 Query: 294 VRVLNNSPDIARAI 307 +R D + Sbjct: 307 LRRRTELADFLAGL 320 >UniRef50_Q1NXZ7 Dihydrouridine synthase TIM-barrel protein nifR3 n=3 Tax=Deltaproteobacteria RepID=Q1NXZ7_9DELT Length = 313 Score = 285 bits (729), Expect = 2e-75, Method: Composition-based stats. Identities = 85/293 (29%), Positives = 136/293 (46%), Gaps = 13/293 (4%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 ++ AP+ G D R L E LC +E + + R ++ + T + Sbjct: 15 LVAAPLAGYSDLPFRLLCREYG-AGLCYSEMLSCHGLV------RRQPATIEMLATTAAE 67 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 + +QL G P+ + E AA L G+D+N GCP + V G GA L++DPEL Sbjct: 68 RPLLMQLFGAEPEVMGEAAAILSRLPIDGIDINMGCPVRKVVKKGAGAALMRDPELAAAI 127 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 A+ A LPV+VK+R GW+ + + A + GA + +H RT G+ Sbjct: 128 TGAVTAAA-GDLPVTVKIRSGWNHKQINAPDFARLLVAHGAAAVTIHARTWSDGFTGR-A 185 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNE 241 DW I +++ +++PVI NG+I ++ A MA +GCD VMIGRGAL P + Sbjct: 186 DWAVIAAVKRAVSVPVIGNGDIGSYEQALAMMAATGCDGVMIGRGALGAPWVFTPGAEQN 245 Query: 242 PRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHV 294 P P + +A +++ L + AR++ L K+ L + + Sbjct: 246 P--PLAQRLAAARRHLELIRHWRPADN-PARVRNQLGRYFKKIPGGARLRRQI 295 >UniRef50_C9KMX2 tRNA-dihydrouridine synthase n=3 Tax=Veillonellaceae RepID=C9KMX2_9FIRM Length = 322 Score = 285 bits (729), Expect = 2e-75, Method: Composition-based stats. Identities = 86/315 (27%), Positives = 142/315 (45%), Gaps = 18/315 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 V LAPM GV D+ R + ++ LC E V + L Sbjct: 12 VFLAPMAGVTDTAYRIIAHDMG-CPLCFAEMVSSQGIHFRNERT------LAMLQSEKEE 64 Query: 63 TLVRVQLLGQFPQWLAENAARAVELG-SWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + +Q+ P+ AE AA LG + +D N GCP+ + +G G+ L++DPE + Sbjct: 65 RPLAMQIFANTPEMAAEAAAFVEALGTADILDFNMGCPAPKIVKNGEGSALMRDPERAFA 124 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKKF-EIADAVQQAGATELVVHGRTKEQGYRAEH 180 A+R+AV +PV+VK+R GWD+ E+A ++AG + VHGRT+EQ Y Sbjct: 125 ILSAIRKAV--KMPVTVKMRKGWDAASVNVVEMAKLAEEAGVDAIAVHGRTREQFYTGR- 181 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY- 239 DW+ IG++++ + IPVIANG++ + + A++GCD VMIGR A P + R + Sbjct: 182 ADWEIIGEVKRAVKIPVIANGDVRTFDDLDKIRAVTGCDGVMIGRAAQGNPWIFRQFTHY 241 Query: 240 -----NEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHV 294 P E A++ ++ L + +++ ++ + L Sbjct: 242 LETGERLPGPTMKERAAVILRHLDLLLKYKGDYVGPREMRKHATWYTRGIVHGAILRDRF 301 Query: 295 RVLNNSPDIARAIQA 309 D ++ Sbjct: 302 NKAVTREDFVEILEE 316 >UniRef50_B2ULM0 TIM-barrel protein, nifR3 family n=3 Tax=Verrucomicrobia RepID=B2ULM0_AKKM8 Length = 334 Score = 285 bits (729), Expect = 2e-75, Method: Composition-based stats. Identities = 81/323 (25%), Positives = 144/323 (44%), Gaps = 19/323 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 + LAPM GV D + R + E+ D+ +TEFV L + R + Sbjct: 19 LFLAPMAGVTDPIFRTICKELG-VDVMVTEFVSAEGILQAWERNRR------YTKIENAH 71 Query: 63 TLVRVQLLGQFPQWLAENAARAVEL-GSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + +QL G + E A ++ +D+N GCP V G GG++LLKD L+ Sbjct: 72 RPIGIQLFGADGNHMGEAARIILDHEKPDFIDINFGCPVPKVVGKNGGSSLLKDLPLLAS 131 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEK-KFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 A + +AV +PV+ K+R+GWD + ++ G + + +HGRT+ Q Y Sbjct: 132 VAGGVVKAVGERIPVTAKIRIGWDFQSLCAMDACRLLENEGISMITIHGRTRSQQYSGT- 190 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 +W I + + +++PVI NG+I Q+ + VMIGR A+ P + KY Sbjct: 191 ANWDIIDECARAMSVPVIGNGDISTPQAVAYVKENTAVSGVMIGRAAMENPWIFGDAKYY 250 Query: 241 ------EPRMPWPEVVALLQKYTRLE---KQGDTGLYHVARIKQWLSYLRKEYDEATELF 291 P E AL+ ++ R+ + L+ + ++ + K + A E+ Sbjct: 251 LLHGTMPPARDPQEKAALILRHARMALESRHYGDELHTMRHMRSRILAYTKGFPGAKEMR 310 Query: 292 QHVRVLNNSPDIARAIQAIDIEK 314 + +++ P++ + + +K Sbjct: 311 SRLVRVSSMPELEDLLSKLPRQK 333 >UniRef50_C8WHM7 TIM-barrel protein, nifR3 family n=2 Tax=Coriobacteriaceae RepID=C8WHM7_EGGLE Length = 330 Score = 284 bits (728), Expect = 2e-75, Method: Composition-based stats. Identities = 96/319 (30%), Positives = 140/319 (43%), Gaps = 22/319 (6%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 R+LLAPM GV D R L E DL TE V + + P Sbjct: 12 RLLLAPMAGVSDEAFRTLCREQG-ADLTYTEMVSAKGLSYANEKTRHLL------RLAPG 64 Query: 62 GTLVRVQLLGQFPQWLAENAARAV-ELGSW--GVDLNCGCPSKTVNGSGGGATLLKDPEL 118 V VQL G P +A AA E+G +D+N GCP++ + G G+ L+KDP L Sbjct: 65 EDQVAVQLFGHEPDTMAAQAAWIEREMGQSLAYLDINMGCPARKIVSKGDGSALMKDPAL 124 Query: 119 IYQGAKAMREAVPAHLPVSVKVRLGWDSGEKK-FEIADAVQQAGATELVVHGRTKEQGYR 177 +A+R AV PV+VK R GW G++ E A ++ AGA + VHGR EQ YR Sbjct: 125 AASIVRAVRAAVS--RPVTVKFRRGWAEGDETAPEFARRMEDAGACAIAVHGRYAEQLYR 182 Query: 178 AEHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVV 237 +W AI +++ +++PV+ NG++ A +GCDAVMI R A P L Sbjct: 183 GR-AEWGAIARVKEAVSVPVVGNGDVRSGADAVAITERTGCDAVMIARAAEGNPWLFAQA 241 Query: 238 KYNEPRMPWP------EVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELF 291 K P P E +AL +++ RL ++ R+++ + A Sbjct: 242 KAALAGEPEPDGPTVEERIALARRHARLL--SAREGRNIVRMRKHAMWYLAGLPGAAAAR 299 Query: 292 QHVRVLNNSPDIARAIQAI 310 + + D + Sbjct: 300 GRINGCVSVEDFDEVFDEL 318 >UniRef50_D2NNX0 tRNA-dihydrouridine synthase n=3 Tax=Actinobacteridae RepID=D2NNX0_9MICC Length = 442 Score = 284 bits (726), Expect = 4e-75, Method: Composition-based stats. Identities = 81/321 (25%), Positives = 141/321 (43%), Gaps = 19/321 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 V+LAPM GV + R L +E L +TE V + R ++ P Sbjct: 78 VVLAPMAGVTNKAFRRLCSEYGG-GLYVTEMVTARALV------ERKPESMRIIEHDPDE 130 Query: 63 TLVRVQLLGQFPQWLAENAARAVELG-SWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + +Q+ G + + VE + +DLN GCP+ V GGGA L +L Sbjct: 131 KIRSIQIYGVDAVNVGKAVRMVVEEDRADHIDLNFGCPAPKVTRRGGGAALPWKTDLFTA 190 Query: 122 GAK-AMREAVPAHLPVSVKVRLGWDSGEKKF-EIADAVQQAGATELVVHGRTKEQGYRAE 179 + A++EA +P+++K+R G D F E A + AG + +HGRT Q Y + Sbjct: 191 IVQTAVKEASRNDIPLTIKMRKGIDDDHITFLESAKIARDAGVAAIALHGRTAAQHYSGK 250 Query: 180 HIDWQAIGDIRQRL-NIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK 238 DW +I +R+ + ++P++ NG+I+ + A + + +G D V+IGRG P L ++ Sbjct: 251 -ADWDSIAQLRELIPDVPILGNGDIFSAEDAVRMVEQTGVDGVVIGRGCQGRPWLFGDLQ 309 Query: 239 Y------NEPRMPWPEVVALLQKYTRLEKQ-GDTGLYHVARIKQWLSYLRKEYDEATELF 291 R EV ++ ++ L + + I++ +++ K Y EL Sbjct: 310 NAFEGSSERIRPTLTEVSDMIYRHAELLVETFGDETRGLREIRKHVAWYFKGYPVGGELR 369 Query: 292 QHVRVLNNSPDIARAIQAIDI 312 + + + I +D Sbjct: 370 AKMAQVPDLATFRELIAQLDH 390 >UniRef50_Q9KV66 tRNA-dihydrouridine synthase B n=56 Tax=Proteobacteria RepID=DUSB_VIBCH Length = 322 Score = 283 bits (725), Expect = 5e-75, Method: Composition-based stats. Identities = 87/314 (27%), Positives = 154/314 (49%), Gaps = 19/314 (6%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPV-KVFHRICPELQNASRTPS 61 +++APM GV D REL + ++E + L K +R+ E ++ R Sbjct: 12 LIVAPMAGVTDRPFRELCLRYG-AGMAVSEMMSCNPALWKTAKSQNRMVHEGESGIR--- 67 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 VQ+ G PQ +AE A +VE G+ +D+N GCP+K VN G+ LL+ P++I Sbjct: 68 ----SVQIAGSDPQLMAEAAQFSVENGAQIIDINMGCPAKKVNKKLAGSALLRYPDVIED 123 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKK-FEIADAVQQAGATELVVHGRTKEQGYRAEH 180 KA+ AV + ++K R GWD+ K IA + G L +HGRT+ Y+ E Sbjct: 124 ILKAVVNAVNVPV--TLKTRTGWDTDNKNCLSIAQLAEDCGIQALALHGRTRACMYKGE- 180 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY- 239 ++ +I ++ ++IPVIANG+I + A+ + +G DA+MIGR A P + + +++ Sbjct: 181 AEYDSIKAVKAAVSIPVIANGDIDSPEKARYVLEYTGADALMIGRPAQGRPWIFQEIQHF 240 Query: 240 -----NEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHV 294 P +P EV ++ + Q ++ +S+ +E+++A+ + Sbjct: 241 LEHGTTMPELPISEVKDIMLGHVTALHQFYGEYLGPRIARKHVSWYLQEHEQASAFRRTF 300 Query: 295 RVLNNSPDIARAIQ 308 + + A++ Sbjct: 301 NAIETADQQLDALE 314 >UniRef50_Q6MRF1 Transcription regulator homolog yacF n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MRF1_BDEBA Length = 337 Score = 283 bits (724), Expect = 7e-75, Method: Composition-based stats. Identities = 81/316 (25%), Positives = 144/316 (45%), Gaps = 17/316 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 +LAPM G+ D R + ++ D + +TE V + ++ L+ S S Sbjct: 12 FVLAPMAGITDHAFRTFIKKL-DASVVVTELVSASG------IEYKSDRTLKLMSFDESQ 64 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 + +QL G+ P+ +A A A G VDLN GCP V G G+ +LKDP + + Sbjct: 65 RPIGIQLFGEEPEIVARAAQVAEADGCDFVDLNFGCPVPKVVKKGAGSAILKDPAAVQKM 124 Query: 123 AKAMREAVPAHLPVSVKVRLGWD-SGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 ++ A+ +P+++K+R GWD + EI + G + + +HGRT+ Q Y Sbjct: 125 VSTVKAAI--KIPLTIKIRTGWDANSRNATEICNIAYNEGVSWVAIHGRTRAQSYTG-LA 181 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVV---- 237 DW I D++ IP++ NG+I + A + SGCD VMIGRG L P + Sbjct: 182 DWDFIADVKANTKIPILGNGDILTPRQANLRLQQSGCDGVMIGRGCLKNPFIFMDALSLW 241 Query: 238 KYNEPRMPWPEVVALLQKYT-RLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRV 296 + + + V+L Q + D + + +++++ ++ Y A + +++ Sbjct: 242 RGEPIKDVKRDYVSLFQGLQKEIVAHCDEHITGI-QLRKFAAWFSTGYSGAAQFRKNLFQ 300 Query: 297 LNNSPDIARAIQAIDI 312 ++ +I Sbjct: 301 SKSNDEIMALANEFFA 316 >UniRef50_P44965 tRNA-dihydrouridine synthase B n=20 Tax=Pasteurellaceae RepID=DUSB_HAEIN Length = 330 Score = 282 bits (722), Expect = 1e-74, Method: Composition-based stats. Identities = 90/311 (28%), Positives = 151/311 (48%), Gaps = 23/311 (7%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQL-LPVKVFHRICPELQNASRTP 60 RVLLAPM G+ D R L L +E + Q+ K R+ + Sbjct: 11 RVLLAPMAGITDQPFRRLCA-YYGAGLTFSEMMSTNPQVWHTEKSKLRLA-------HSE 62 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 L VQ+ G P +A+ AA VE G+ +D+N GCP+K VN G+ LL+ P+L+ Sbjct: 63 DLGLNAVQIAGSDPLEMAQAAAINVEYGAQIIDINMGCPAKKVNRKLAGSALLQFPDLVE 122 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWD-SGEKKFEIADAVQQAGATELVVHGRTKEQGYRAE 179 + + + AV ++PV++K+R GWD S +I +Q G L VHGRT+ + E Sbjct: 123 KILREVVSAV--NVPVTLKIRTGWDKSNRNCVQIGKIAEQCGIQALTVHGRTRACLFEGE 180 Query: 180 HIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY 239 ++ I ++Q + IPVIANG+I + A+ + +G DA+MIGR AL P L + V+ Sbjct: 181 -AEYDNIKAVKQAIAIPVIANGDIDSARKAKFVLNYTGADAIMIGRAALGNPWLFQAVEN 239 Query: 240 NEPRMPWPEVVALLQ------KYTRLEKQ--GDTGLYHVARIKQWLSYLRKEYDEATELF 291 ++ +L + ++ + Q G+ Y +AR + +++ + + Sbjct: 240 LIEHNSISQMPSLKEKCGQILRHIQELHQFYGEQKGYRIAR--KHVAWYLQGIQPDSVFK 297 Query: 292 QHVRVLNNSPD 302 Q +++ + Sbjct: 298 QTFNAISDPKE 308 >UniRef50_Q1Q3Q8 Strongly similar to tRNA-dihydrouridine synthase n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q3Q8_9BACT Length = 341 Score = 282 bits (721), Expect = 1e-74, Method: Composition-based stats. Identities = 82/308 (26%), Positives = 138/308 (44%), Gaps = 13/308 (4%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 ++LAPM G D R + + TE V V + K ++ Sbjct: 35 LILAPMAGFSDMPYRLICRRFG-MSMSYTEVVSVSGIVWNNKKTFKLL------DFKEEE 87 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 V Q++G + E + +LG +D+N GC + G G GA +LK P I + Sbjct: 88 RPVTFQVVGNDECQITEACKKIEQLGPDIIDINMGCSVSDIAGKGAGAGMLKHPSKISKM 147 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSG-EKKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 + ++ +PV+ K+RLGWD E+A +++ GA+ + VHGRT+ Q Y + Sbjct: 148 FNNLTGSLS--VPVTGKIRLGWDHKTRNYIEVARILEENGASLIAVHGRTRSQ-YFSGAA 204 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNE 241 DW AI +++Q + IPVIANG++ + + CD VMIGR A+ P + R + Sbjct: 205 DWDAIAEVKQSVKIPVIANGDVRSVADIAEIKKRTACDGVMIGRAAIGHPWIFRY--KDR 262 Query: 242 PRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNNSP 301 + E + +++ + K+ V ++ +ATEL ++ ++ Sbjct: 263 ENISGSEKIEMIRYHLDCMKEYYGHAIGVVLFRKHAVKYIVGLPKATELRPYIVRSKSAE 322 Query: 302 DIARAIQA 309 DI I A Sbjct: 323 DIISYIAA 330 >UniRef50_Q31II6 Dihydrouridine synthase n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31II6_THICR Length = 320 Score = 281 bits (720), Expect = 2e-74, Method: Composition-based stats. Identities = 88/308 (28%), Positives = 145/308 (47%), Gaps = 19/308 (6%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 + LAPM G+ D + R++ E + ++E V QL ++A +T + Sbjct: 12 IALAPMAGITDRVYRDICRE-SGASYAVSEMVASKKQLRESAK-----SSTRHADKTET- 64 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 + VQLLG P+ L + A G+ +DLN GCP+K V G+ L+ PE + Sbjct: 65 SPRIVQLLGTHPEELVDAALWQQSQGADIIDLNMGCPAKKVCDVAAGSALMGQPERVADI 124 Query: 123 AKAMREAVPAHLPVSVKVRLGWD-SGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 K++ EA+ LPV+VK+R G D EIA Q+ G + +HGRT+ + + Sbjct: 125 FKSLTEAI--DLPVTVKIRTGTDVDNINAVEIAKLAQELGLKAITIHGRTRADKFNGQ-A 181 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY-- 239 ++ I ++Q ++IPVIANG+I + AQ + +G D +MIGR A P + R + + Sbjct: 182 EYDTIKAVKQAVDIPVIANGDICSPKEAQFVLKYTGSDGIMIGRAAQGYPWIFREIAHFL 241 Query: 240 ----NEPRMPWPEVVALLQKYT-RLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHV 294 P + E ++ ++ LE L H ++ L + + TEL + Sbjct: 242 KTGDCLPSPSFAEFQQVMTRHFSELEILYGEHLGH-KIARKHLGWYSQYLPNGTELRKRF 300 Query: 295 RVLNNSPD 302 L N+ Sbjct: 301 NRLENTQA 308 >UniRef50_B7GFK6 tRNA-dihydrouridine synthase n=211 Tax=Bacteria RepID=B7GFK6_ANOFW Length = 351 Score = 281 bits (720), Expect = 2e-74, Method: Composition-based stats. Identities = 83/324 (25%), Positives = 138/324 (42%), Gaps = 22/324 (6%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 V+LAPM GV +S R + E L E V L + Sbjct: 31 VVLAPMAGVCNSAFRLTVKEFG-AGLVCAEMVSDKAILFNN------PKTMGMLYIDERE 83 Query: 63 TLVRVQLLGQFPQWLAENAARAVEL-GSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + +Q+ G + L + A + + +D+N GCP + GA L DP IY Sbjct: 84 KPLSLQIFGGEKETLVQAAKYVDQHTNADIIDINMGCPVPKITKCDAGAKWLLDPNKIYD 143 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEK-KFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 A+ +AV PV+VK+R+GWD E A AV++AG + VHGRT+ Q Y + Sbjct: 144 MVAAVVDAVEK--PVTVKMRIGWDENHIYAVENAQAVERAGGQAVAVHGRTRVQMYEGK- 200 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPN-LSRVVKY 239 DW I +++ + IPVI NG++ Q A++ + +G D VMIGR AL P + R V+Y Sbjct: 201 ADWNVIKQVKEAVRIPVIGNGDVQTPQDAKRMLEQTGVDGVMIGRAALGNPWMIYRTVRY 260 Query: 240 NE-----PRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHV 294 E P E + + + V +++ ++ K ++ + Sbjct: 261 LETGELIPEPSVREKIEVCILHLDRLIALKNEYIAVKEMRKHAAWYLKGIRGNAKVRNAI 320 Query: 295 RVLNNSPDIA----RAIQAIDIEK 314 ++ ++ ++ ++ Sbjct: 321 NECQTRDELVTLLMSFVEEVEAKE 344 >UniRef50_C1ZDL9 Putative TIM-barrel protein, nifR3 family n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZDL9_PLALI Length = 385 Score = 281 bits (720), Expect = 2e-74, Method: Composition-based stats. Identities = 84/318 (26%), Positives = 141/318 (44%), Gaps = 17/318 (5%) Query: 1 MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTP 60 R LL+P+ G + R ++ E+ L T+ V L + R+ + P Sbjct: 48 FRTLLSPLAGFTNLPFRRVVHELGGLGLGTTDLVNARGLLAGSEKTLRL------IATHP 101 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 VQ+ G + + A G +D+N GCP V +G GA+L+ + Sbjct: 102 IDRPFAVQIFGGEASIMRDAAQLLEARGVDSIDINMGCPVLKVVKTGAGASLMCHADAAT 161 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKK-FEIADAVQQAGATELVVHGRTKEQGYRAE 179 + KA+ EAV H+PV+VK+RLGWD+ + A +Q G + +HGRT+ QG+ Sbjct: 162 ELVKAVVEAV--HVPVTVKMRLGWDASQLTAPRFAREFEQVGVAAVAIHGRTRAQGFSGT 219 Query: 180 HIDWQAIGDIRQRLN-IPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK 238 ++ I + + ++ IPVIANG+I A +GC A+ IGRGAL P + R + Sbjct: 220 -VNRDGIRQVVEAVDSIPVIANGDIRSVDDAIAMYDETGCQAISIGRGALANPWIFRQLT 278 Query: 239 YNEPRMPW------PEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQ 292 E W + + L+++ R ++ V+ ++ + K L Sbjct: 279 EWETTGDWAPAGSFNDRLLLMRRQFRYLQEWVGEETAVSAFRKMSHWYTKAMRVGPALRH 338 Query: 293 HVRVLNNSPDIARAIQAI 310 V+ + +A+Q I Sbjct: 339 AVQSAKTGEEFEQALQEI 356 >UniRef50_A6CBK4 Predicted TIM-barrel enzyme, possibly dehydrogenase, nifR3 family protein n=2 Tax=Planctomycetaceae RepID=A6CBK4_9PLAN Length = 365 Score = 281 bits (719), Expect = 2e-74, Method: Composition-based stats. Identities = 83/320 (25%), Positives = 143/320 (44%), Gaps = 17/320 (5%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 R LL+P+ G + R ++ E+ L T+ V L + LQ P Sbjct: 29 RYLLSPLAGYTNLPFRRIVRELGGVGLATTDLVNARGLLEGSEKT------LQLTQTCPE 82 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + VQ+ G PQ + + A G +D+N GCP + G GA+++ P Sbjct: 83 DSPFAVQIFGSEPQQMKDAAQLLESRGVHSIDINMGCPVNRIVKGGAGASMMCRPSDTVS 142 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 + + EAV +PVSVK+RLGWD E + ++ G + +HGRT+EQG+R Sbjct: 143 LVQTVVEAV--KIPVSVKMRLGWDDSELSAPFFSREFEKVGVVAVAIHGRTREQGFRG-V 199 Query: 181 IDWQAIGDIRQRLN-IPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY 239 ++ I + + ++ IPVI NG++ + A + +GC V IGRGAL P + R + Sbjct: 200 VNHDGIRRVVEAVDSIPVIGNGDVTNVAEADFMLKTTGCAGVSIGRGALANPWIFRQLVQ 259 Query: 240 NE------PRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQH 293 E P + + + LL + R + T ++ ++ + K + Sbjct: 260 WEQTGTYDPPGNFDDRLELLLRQFRYLLEMTTEKRAISMFRKMGHWYLKSMRVKPAMRHE 319 Query: 294 VRVLNNSPDIARAIQAIDIE 313 ++ +N + +A++ I E Sbjct: 320 FQLASNLDEFGQAVRKIAAE 339 >UniRef50_A8ZYE4 Putative TIM-barrel protein, nifR3 family n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZYE4_DESOH Length = 326 Score = 281 bits (719), Expect = 3e-74, Method: Composition-based stats. Identities = 81/314 (25%), Positives = 141/314 (44%), Gaps = 18/314 (5%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 R +LAP+ G+ D+ R L + L +E V + TP Sbjct: 11 RTILAPLAGITDAPFRRL-AKAAGCALVYSEMVSSHGLFYQSEKT------GAMLRTTPE 63 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 VQ+ G P + AA G+ +D+N GC K + SG GA L+KD L + Sbjct: 64 EAPFAVQIFGGKPAVMGRAAAMVQASGAHMIDINFGCSVKKILKSGAGAALMKDLPLAAE 123 Query: 122 GAKAMREAVPAHLPVSVKVRLGWD-SGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 +A+R+AV +P+++K+R GW+ G F +A+ + G + +H RT QG+ Sbjct: 124 VIQAVRDAVS--IPLTIKMRSGWNPDGSDAFHLAEIAEARGVNAVALHPRTATQGF-GGT 180 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 DW I ++QR +PVI NG+I + A++ + +GCDAVM+GR A+ P + + + Sbjct: 181 ADWSLIAALKQRTGLPVIGNGDIVLPEDARRMLDQTGCDAVMVGRAAIGAPWIFKQINAC 240 Query: 241 EPRMPWPEVVALLQKYTRLEKQGDTGLYHVAR------IKQWLSYLRKEYDEATELFQHV 294 P E +L ++ + + + + H ++ L + + T + + Sbjct: 241 LAGKPVVE-PSLEHRFEVMSEYINAMVAHYGEDLACRVMRSRLGWFTRAMPHGTLFRESI 299 Query: 295 RVLNNSPDIARAIQ 308 R + + A+ Sbjct: 300 RRIETKDQVLAAVS 313 >UniRef50_D2RA64 TIM-barrel protein, nifR3 family n=5 Tax=Actinobacteridae RepID=D2RA64_GARVA Length = 384 Score = 280 bits (718), Expect = 3e-74, Method: Composition-based stats. Identities = 81/320 (25%), Positives = 135/320 (42%), Gaps = 18/320 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 V+L+PM G+ + R + E L + E + + R+C PS Sbjct: 19 VVLSPMAGITNWPFRVICREFGPDGLYVAEMITARALVARNPKALRLC------RFAPSE 72 Query: 63 TLVRVQLLGQFPQWLAENAARAV-ELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + +QL G P + + V E + VDLN GCP V GGG+ L +L+ + Sbjct: 73 KVRSLQLYGVNPSIVEQATRIVVDENMADHVDLNFGCPVPKVTRRGGGSALPWKTDLLQE 132 Query: 122 GAKAMREAV-PAHLPVSVKVRLGWDSGEKKF-EIADAVQQAGATELVVHGRTKEQGYRAE 179 + PA +PV+ K R+G D + F + Q+ G + +H RT + Y Sbjct: 133 ILHRVVSVCEPAGIPVTAKFRVGIDENHETFIQAGHIAQEEGCAAVTLHARTTAE-YYGG 191 Query: 180 HIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK- 238 H DWQ IG++ + L+IPV NG+IW + A +GC V IGRG P L ++ Sbjct: 192 HSDWQRIGELVETLDIPVFGNGDIWGAEDALAMFKETGCAGVAIGRGCQGRPWLFADIRN 251 Query: 239 -----YNEPRMPWPEVVALLQKYTRL--EKQGDTGLYHVARIKQWLSYLRKEYDEATELF 291 N EV +++ ++ L E V +++ +++ K + Sbjct: 252 ACEGSDNRVNPTLAEVGSVILRHLNLLVEFYDGDERMAVHDLRKHIAWYLKGFPVGGGTR 311 Query: 292 QHVRVLNNSPDIARAIQAID 311 + + D+ R + +D Sbjct: 312 KAFMECESIEDVQRNLDMLD 331 >UniRef50_D1VTQ2 Probable tRNA-dihydrouridine synthase n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VTQ2_9FIRM Length = 310 Score = 280 bits (718), Expect = 4e-74, Method: Composition-based stats. Identities = 75/320 (23%), Positives = 147/320 (45%), Gaps = 17/320 (5%) Query: 1 MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTP 60 ++ +APM G D R+L+ E N D +TE V + L+ + P Sbjct: 2 IKFFMAPMAGYTDRAFRQLIYE-NGLDHAVTEMVSARALCFNDRKT------LELLKKFP 54 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 VQ+ + +++ + + +D+N GCP+ + +G G+ L+K+P L+Y Sbjct: 55 GEKNTGVQIFASDVESISKASYLLNDFDFSYIDINMGCPAPKIVKNGCGSALIKNPNLVY 114 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 + K + ++ +S+K R +D+ +I A Q AGA + VH R++E+ Y+ + Sbjct: 115 ELVKGAVKN--SNKKISIKTRKSFDNT-LSLDIIRAAQDAGAFAVTVHPRSREEYYKNKS 171 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 DWQ + I++ L IP+I NG+I + A + D + IGRGA+ P + +K Sbjct: 172 -DWQYLIKIKKFLTIPLIGNGDILTVEDALYKIKKYDVDGIAIGRGAIENPLIFSQIKKA 230 Query: 241 EPRMPWPE-----VVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVR 295 + E + +L ++ LE + +++ +Y K + E+ + Sbjct: 231 LKGEKYEELNFNQRIDILLRHLYLEVNYKGQRQAILNMRKTYAYYLKNLKNSKEIRNKLN 290 Query: 296 VLNNSPDIARAIQAIDIEKL 315 V N+ ++ + ++ E++ Sbjct: 291 VENDYTNVVKILEEY-REQM 309 >UniRef50_D0L1E3 TIM-barrel protein, nifR3 family n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0L1E3_HALNC Length = 333 Score = 280 bits (717), Expect = 4e-74, Method: Composition-based stats. Identities = 87/312 (27%), Positives = 139/312 (44%), Gaps = 17/312 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 + LAPM GV D R+L E L +TE + +L + + Sbjct: 26 LALAPMAGVSDRPFRQLCREYG-AGLVVTEMMSAKPELQSSAKSRLRQIDSNDIE----- 79 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 VQLLG P LAE A AV G+ +DLN GCP+K V G+ L+ +P+ + + Sbjct: 80 -PRAVQLLGNDPFELAEAARFAVSQGAQLIDLNLGCPAKKVCKRAAGSALMAEPDTVARL 138 Query: 123 AKAMREAVPAHLPVSVKVRLGWD-SGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 +A+ AV PVS+K+R G D IA + AG + L +HGRT+ Y E Sbjct: 139 LEALVAAV--DCPVSLKMRTGPDREWRNAVAIAKIAENAGISMLSIHGRTRADRYEGE-A 195 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNE 241 ++ I ++ +++PV ANG+I Q A+Q +A +G +M+GRGA P + +K Sbjct: 196 EYDTIAEVVAAVDLPVFANGDITTPQKARQVIAHTGAAGIMVGRGAFGQPWIFSALKAEL 255 Query: 242 PRMPWPEVVALLQKYTRLEKQGDTGLYHVA-----RI-KQWLSYLRKEYDEATELFQHVR 295 P P ++ ++KQ + +H RI ++ L + + E Sbjct: 256 TGQPLPSPPDRAERVVAIKKQFEKIYHHYGDSLGIRIARKHLGWYAASLELGEEDRAVFN 315 Query: 296 VLNNSPDIARAI 307 + + + Sbjct: 316 RFEHPEQQRQWL 327 >UniRef50_B8FGI4 TIM-barrel protein, nifR3 family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FGI4_DESAA Length = 332 Score = 280 bits (717), Expect = 4e-74, Method: Composition-based stats. Identities = 80/316 (25%), Positives = 139/316 (43%), Gaps = 16/316 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 ++ AP+ GV + +R L+ + + L +E + + K ++ + Sbjct: 13 LVCAPLAGVTNLPLR-LMAKRHGAALVCSEMISSNGLIRYQKKT------MELMASKEEE 65 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 + +Q+ G P LA++A E G+ VD+N GC K V G G+ L+ D + Sbjct: 66 RPLSIQIFGSDPGVLADSARIVAEHGADIVDINFGCSVKKVLKGGAGSALMADLPRAEKI 125 Query: 123 AKAMREAVPAHLPVSVKVRLGWD-SGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 K +R+A+ LP ++K+R GWD SG++ + Q AG + +H RT +QG+ H Sbjct: 126 LKEVRKAIS--LPFTIKMRSGWDASGDEAMALGRIAQDAGVDAVALHPRTAKQGFSG-HS 182 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRV---VK 238 DW I ++Q L IPVI NG++ + + M +GCD VMIGR L P + R + Sbjct: 183 DWSQIKRLKQELTIPVIGNGDVTKPEHVLEMMEQTGCDGVMIGRAVLYAPWIFRQALCLL 242 Query: 239 YNEP--RMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRV 296 N P + + +L Y + ++ L++ K A + + Sbjct: 243 ENRPMEEIDLDDRKKVLFDYLDDTMDYLGEEHGCRVMRSRLAWFVKGLPNAAKFRGEITR 302 Query: 297 LNNSPDIARAIQAIDI 312 + + I+ Sbjct: 303 IASKEQARDLIEEFFR 318 >UniRef50_D2U2K4 tRNA-dihydrouridine synthase B n=1 Tax=Arsenophonus nasoniae RepID=D2U2K4_9ENTR Length = 458 Score = 280 bits (716), Expect = 5e-74, Method: Composition-based stats. Identities = 83/314 (26%), Positives = 148/314 (47%), Gaps = 17/314 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 ++ APM G+ D R L + + ++E + Q+ L+ G Sbjct: 41 LVAAPMAGITDRPFRSLCYSMG-AGMTVSEMLSSNPQVWKTDKSR-----LRMIHSDELG 94 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 + VQ+ G P +A A V G+ +D+N GCP+K VN G+ LL+ PELI + Sbjct: 95 -IRSVQIAGSDPDEMATAARINVANGAQIIDINMGCPAKKVNRKLAGSALLRYPELIEKI 153 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGEKK-FEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 A+ AV +PV++KVR GW E+ +IA ++ G + +HGRT+ + Sbjct: 154 LLAVVNAV--DVPVTLKVRTGWSPEERNCIKIAQLAERCGIQAVTIHGRTRACLFNG-AA 210 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN- 240 ++ +I +Q + IP+IANG+I D A+ + +G DA+MIGR A P + R +++ Sbjct: 211 EYDSIRAAKQNVTIPIIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYL 270 Query: 241 -----EPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVR 295 P MP EV L+Q + + + ++ +S+ +E+ + + Sbjct: 271 ETGELLPPMPIAEVQCLMQAHVKELHDFYGQGKGIRIARKHVSWYLREHAPDDQFRRTFN 330 Query: 296 VLNNSPDIARAIQA 309 + ++ + ++A Sbjct: 331 TIEDASEQLEVLEA 344 >UniRef50_D1NSS9 Putative tRNA-dihydrouridine synthase n=1 Tax=Bifidobacterium gallicum DSM 20093 RepID=D1NSS9_9BIFI Length = 422 Score = 279 bits (714), Expect = 9e-74, Method: Composition-based stats. Identities = 77/320 (24%), Positives = 131/320 (40%), Gaps = 18/320 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 V+L+PM GV + R L + L + E + + R+C PS Sbjct: 57 VILSPMAGVTNWPFRVLCEQYGPDGLYVAEMITARALVARNPKALRLC------RFAPSE 110 Query: 63 TLVRVQLLGQFPQWLAENAARAV-ELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + +QL G P + + A V E + VDLN GCP V GGG+ L +L Sbjct: 111 RIRSLQLYGVNPSIMEQAAKIVVDEQMADHVDLNFGCPVPKVTRRGGGSALPWKTDLFTD 170 Query: 122 GAKAMREAVPA-HLPVSVKVRLGWDSGEKK-FEIADAVQQAGATELVVHGRTKEQGYRAE 179 + A +PV+ K+R+G D + E Q+ G + +H RT + Y Sbjct: 171 VVSRVVRVCDAAGIPVTAKIRVGIDHEHETFHEAGHIAQEEGCKAVTLHARTTAE-YYGG 229 Query: 180 HIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY 239 H DW IG++ ++L++PV NG+IW A + +GC V IGRG P L +K+ Sbjct: 230 HSDWSRIGELVEQLDVPVFGNGDIWGAADALAMVEQTGCAGVAIGRGCQGRPWLFADIKH 289 Query: 240 ------NEPRMPWPEVVALLQKYTR--LEKQGDTGLYHVARIKQWLSYLRKEYDEATELF 291 +V ++ ++ E +++ +++ K + + Sbjct: 290 AFAGSDERTDPTLGQVCQVIMRHATYLTEFYDGDERMAAHDMRKHVAWYLKGFPVGGGVR 349 Query: 292 QHVRVLNNSPDIARAIQAID 311 + + D+ R + +D Sbjct: 350 RAFMACESLADMQRIVDGLD 369 >UniRef50_Q2RM54 Dihydrouridine synthase TIM-barrel protein nifR3 n=6 Tax=Clostridia RepID=Q2RM54_MOOTA Length = 334 Score = 279 bits (713), Expect = 1e-73, Method: Composition-based stats. Identities = 91/314 (28%), Positives = 145/314 (46%), Gaps = 16/314 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 +++APM G D + R L E L TE + + K H + Sbjct: 16 LIMAPMAGYTDRVFRLLAREAGAA-LTYTEMISAQGLIYNNKNTHALL------DLKGEP 68 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 V VQL G+ P+ +A AV G+ +DLN GCP+ + +G G+ L++D Sbjct: 69 GPVAVQLFGREPEIMAAATRIAVAAGAAIIDLNMGCPTPKIVKNGEGSALMRDLPRAAAI 128 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGEKKF-EIADAVQQAGATELVVHGRTKEQGYRAEHI 181 AM A +PV+VK+RLGWD E A AV AGA + +HGRT+ Q Y Sbjct: 129 VAAMVRAAGP-VPVTVKMRLGWDEDSINVVEAARAVVYAGAAAVAIHGRTRSQFYSGR-A 186 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNE 241 DW +++ +++PVI NG++ + A +A +GCD VM+GRGA+ P L ++ Sbjct: 187 DWSYFRRVKEAVDVPVIGNGDVRTARDAVTMLAETGCDGVMVGRGAVGNPWLLTAIRAVL 246 Query: 242 PRMPWPEVVA------LLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVR 295 P P V + ++ +L + V +++ L+ + A L Q + Sbjct: 247 EGRPEPPPVDVRTRMTMACRHLKLLVELKGETTAVKEMRKHLACYFRGLPGAARLRQQIN 306 Query: 296 VLNNSPDIARAIQA 309 L + ++ AI+A Sbjct: 307 TLTTAAEVIAAIKA 320 >UniRef50_A0M6M9 TRNA-dihydrouridine synthase n=16 Tax=Bacteroidetes RepID=A0M6M9_GRAFK Length = 330 Score = 278 bits (711), Expect = 2e-73, Method: Composition-based stats. Identities = 85/320 (26%), Positives = 139/320 (43%), Gaps = 19/320 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 +LLAPME V D R L E D+ TEF+ Sbjct: 14 LLLAPMEDVSDPPFRALCKEQG-ADVVYTEFISSEGL------IREAAKSTMKLDIYEKE 66 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 V +Q+ G + + ++ + G +D+N GCP K V G GA +LKD +L+ Sbjct: 67 RPVGIQIFGANLESMLQSVEIVEKSGPDIIDINFGCPVKKVVSKGAGAGILKDIDLMVSL 126 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 +AM + LP++VK RLGWD K E+A+ +Q G + +HGRT+ Q Y+ E Sbjct: 127 TEAMVKNTS--LPITVKTRLGWDHDSIKIVEVAERLQDVGCKAISIHGRTRAQMYKGE-A 183 Query: 182 DWQAIGDIRQ--RLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY 239 DW I +++ R++IPV NG++ + A + G D MIGR ++ P R VK+ Sbjct: 184 DWAPIAEVKNNPRMHIPVFGNGDVDSPEKAMEMRDNFGLDGAMIGRASIGYPWFFREVKH 243 Query: 240 ------NEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQH 293 + E V +++ ++ V ++ + K E Sbjct: 244 YFETGKHLAPPTLEERVDAARRHLQMAIDWKGERLGVFETRRHYTNYFKGIPHFKEYRMK 303 Query: 294 VRVLNNSPDIARAIQAIDIE 313 + ++S D+ +A ++ E Sbjct: 304 MVTSDDSVDVFKAFDEVEKE 323 >UniRef50_B6W908 Putative uncharacterized protein n=1 Tax=Anaerococcus hydrogenalis DSM 7454 RepID=B6W908_9FIRM Length = 321 Score = 277 bits (709), Expect = 4e-73, Method: Composition-based stats. Identities = 78/315 (24%), Positives = 146/315 (46%), Gaps = 18/315 (5%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 +++LAP+ GV D R L++E D TE V V K + + + + Sbjct: 9 QIMLAPLAGVSDVGFR-LISERYGADKTFTEMVSVNALYYDNKKTNDLL------FISEN 61 Query: 62 GTLVRVQLLGQFPQWLAENAARAVEL--GSWGVDLNCGCPSKTVNGSGGGATLLKDPELI 119 +QL G P+ + + + S + N GCP + +G G+ L+ +P+L+ Sbjct: 62 EKNCNIQLFGSKPEVIEKVIKDKINYIEKSKEISFNMGCPVAKITKNGEGSQLMANPKLV 121 Query: 120 YQGAKAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRA 178 + K +R++ L ++K RLG D +I Q G +++H RTK+Q Y Sbjct: 122 EEICKTLRKSTDKKL--NIKFRLGIDDKHINYLDIGKIAQDTGIDYVILHARTKDQMYSG 179 Query: 179 EHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK 238 + +W I +++ L IPVIANG+I+ + + ++ D VM+ RGA+ P L + +K Sbjct: 180 -NANWDHIRKLKENLQIPVIANGDIFSVEDFINVIDLTKADGVMLARGAMGNPFLFKEIK 238 Query: 239 Y----NEPRMPWP-EVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQH 293 + P P E++ L +LE + V ++++ LS+ K + ++++ Sbjct: 239 DYIKTGKYSKPSPIEIIDQLIDQYKLELKYKEEKLVVTQMRKHLSWYIKGLENSSKIRDL 298 Query: 294 VRVLNNSPDIARAIQ 308 V L ++ ++ Sbjct: 299 VNKLKTIDEVMDELE 313 >UniRef50_B8DSX5 Possible NifR3-like protein n=15 Tax=Bifidobacterium RepID=B8DSX5_BIFA0 Length = 417 Score = 277 bits (708), Expect = 5e-73, Method: Composition-based stats. Identities = 83/320 (25%), Positives = 135/320 (42%), Gaps = 18/320 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 V+L+PM GV + R L E L + E V + R L+ PS Sbjct: 52 VMLSPMAGVTNWPFRVLCEEYGPDGLYVAEMVTARALV------ERNPKALRLCRFAPSE 105 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGS-WGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + +QL G P + + A V+ G +DLN GCP V GGG+ L +L + Sbjct: 106 RIRSLQLYGVNPSIMEQAARFLVDNGMMDHLDLNFGCPVPKVTRRGGGSALPWKTDLFTE 165 Query: 122 GAKAMREAV-PAHLPVSVKVRLGWDSGEKKF-EIADAVQQAGATELVVHGRTKEQGYRAE 179 + + PA++PV+ K+R+G D + F E Q+ G + + +H RT + Y Sbjct: 166 IVQRVVAVCEPANIPVTAKIRVGLDHEHETFLEAGRIAQEEGCSAVTLHARTTAE-YYGG 224 Query: 180 HIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY 239 H DW IG++ L+IPV NG+IW + A + +GC V IGRG P L + Sbjct: 225 HSDWCRIGELVSTLDIPVFGNGDIWGAEDAIAMVNETGCAGVAIGRGCQGRPWLFGNIGN 284 Query: 240 N------EPRMPWPEVVALLQKYTRL--EKQGDTGLYHVARIKQWLSYLRKEYDEATELF 291 EV ++ ++ L E V +++ +++ K + Sbjct: 285 AFAGSDVRINPTLGEVGRIIMRHAELLTEFYDGDERMAVHDLRKHVAWYLKGFPVGGSTR 344 Query: 292 QHVRVLNNSPDIARAIQAID 311 + + D+ + A+D Sbjct: 345 RAFMECESLKDVREQVDALD 364 >UniRef50_B1ZWU6 TIM-barrel protein, nifR3 family n=6 Tax=Verrucomicrobia RepID=B1ZWU6_OPITP Length = 370 Score = 276 bits (706), Expect = 8e-73, Method: Composition-based stats. Identities = 76/313 (24%), Positives = 138/313 (44%), Gaps = 17/313 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 + L+P+ G + R L E+ T+ V L R L+ + + Sbjct: 12 LFLSPLAGYTNLPFRLTLRELGGLGWVTTDLVNARSLL------ERNPAALKLVASSAED 65 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 + +QL G P + + A +LG+ VD+N GCP + V GGG+ ++ + Sbjct: 66 RPMSIQLFGSVPTEMRDAARICEDLGAQAVDINMGCPVRKVVRVGGGSAMMTELNQTAAL 125 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGEKK-FEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 + M EAV +PV+ K+RLGWD ++A ++ AG + VHGRT+ QG+ + Sbjct: 126 VRGMIEAV--KIPVTAKMRLGWDDENLTAPDLARVLEDAGVAAVFVHGRTRAQGFSGT-V 182 Query: 182 DWQAIGDIRQRLN-IPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 + I + Q + IPVI NG++ ++A+ + +GC V IGRGA P + R + Sbjct: 183 NLAGIAAVVQAVKRIPVIGNGDVTTPEAARAMIEQTGCAGVSIGRGAFYDPWIFRRTHHL 242 Query: 241 E------PRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHV 294 P + E V +++++ + ++ + K + A + + Sbjct: 243 LTSGELWPEPGFDERVRVMRRHFERYCEFYGEEKGPRLFRKVAPWYAKRFGPAKPFKRRI 302 Query: 295 RVLNNSPDIARAI 307 +++ D A+ Sbjct: 303 ITIDSRADFDAAL 315 >UniRef50_Q3AZ67 Dihydrouridine synthase TIM-barrel protein nifR3 n=24 Tax=Cyanobacteria RepID=Q3AZ67_SYNS9 Length = 356 Score = 276 bits (706), Expect = 8e-73, Method: Composition-based stats. Identities = 96/312 (30%), Positives = 152/312 (48%), Gaps = 16/312 (5%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 RVL +P+ GV D + R L+ + L TE V L + +L+ Sbjct: 38 RVLQSPLAGVTDKIFRGLVRRWSRDSLLFTEMVNATSLELGHG--YGKMDDLK-----AE 90 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + VQL P +A A RA + G++ +D+N GCP + + GGG+ L++DP L Q Sbjct: 91 EGPIAVQLFDHRPHAMAHAARRAEQAGAFLIDINMGCPVRKIAKKGGGSGLIRDPNLATQ 150 Query: 122 GAKAMREAVPAHLPVSVKVRLGW-DSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 +A+ +AV +PV+VK RLGW S +Q AGA L +HGRT+EQG++ + Sbjct: 151 ILEAVVDAVS--IPVTVKTRLGWCGSSSDPITWCRQLQNAGAQMLTLHGRTREQGFKGQ- 207 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 +W AI +++Q L IPVIANG+I A +C+ I+G D VM+GRG + P L ++ Sbjct: 208 ANWNAIAEVKQALTIPVIANGDINSPTDALRCLEITGADGVMVGRGTMGSPWLVGQIEAA 267 Query: 241 EPRMPWPEVVAL-LQKYTRLEKQGD----TGLYHVARIKQWLSYLRKEYDEATELFQHVR 295 P P + + E+ D G + + ++ +S+ + A +L + Sbjct: 268 FMNRPIPATPDSGARLHLAKEQLHDLVSSRGSHGLLIARKHMSWTCTGFPGAPQLRHSLM 327 Query: 296 VLNNSPDIARAI 307 D + I Sbjct: 328 RATTPDDAYQLI 339 >UniRef50_Q6SFW7 NifR3/Smm1 family protein n=1 Tax=uncultured marine bacterium 578 RepID=Q6SFW7_9BACT Length = 322 Score = 276 bits (706), Expect = 8e-73, Method: Composition-based stats. Identities = 81/311 (26%), Positives = 146/311 (46%), Gaps = 21/311 (6%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLP-VKVFHRICPELQNASRTP 60 +VLLAPM G D R + E L +E V + LL K HR+ Sbjct: 11 KVLLAPMAGTSDKPFRMICREQGAA-LTTSEMVVMQKHLLNTNKSKHRL-------DFRS 62 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 + + +Q+ G Q LAE+A +A+E G+ +D+N GCP+K V G+ L+K+ +L+ Sbjct: 63 EQSPISIQIAGSESQELAESAKQALEFGADIIDINMGCPAKKVCNKAAGSALMKNEKLVE 122 Query: 121 QGAKAMREAVPAHLPVSVKVRLGW-DSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAE 179 KA+ AV ++PV++K+R GW + + IA + G L +HGRT+ Q Y + Sbjct: 123 DIIKAVVNAV--NIPVTLKMRTGWNEENKNAPTIAKIAEDNGIKMLAIHGRTRAQKYNGD 180 Query: 180 HIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY 239 ++ + I+ ++IPV+ANG+I Q A++ + +G DAVM+GR P L + Sbjct: 181 -AEYDTVKKIKGIVSIPVVANGDITSAQKAKKVLDYTGADAVMLGRATQGNPWLVGQINN 239 Query: 240 NEPRMPWP------EVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDE--ATELF 291 P + ++L+ ++ ++ + + D+ + + Sbjct: 240 YLKTGKSPKAPLLDKKISLILRHILQIHDFYGHKMGTQLSRKHIFWYSMHLDQEKGSAFW 299 Query: 292 QHVRVLNNSPD 302 ++ + + + Sbjct: 300 PNINRVTDHSE 310 >UniRef50_Q2RTR9 Dihydrouridine synthase TIM-barrel protein nifR3 n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RTR9_RHORT Length = 362 Score = 275 bits (704), Expect = 1e-72, Method: Composition-based stats. Identities = 91/296 (30%), Positives = 140/296 (47%), Gaps = 14/296 (4%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 ++LAPM GV DS R L + L TE V + L + P L + Sbjct: 14 IMLAPMAGVTDSPFRRLAHDYG-CPLSWTEMVASRELLRERA--RGVDPRLGGGAEAGRA 70 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 VQL G P +AE A R G+ +D+N GCP + V G GG+ L++D L + Sbjct: 71 GPFAVQLAGCDPLIMAEAARRVEGAGAELIDINMGCPVRKVVGGLGGSALMRDLPLAARI 130 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 +A+ AV LPVS+K+RLGWD E+A + AG + L VHGRT+ Q Y Sbjct: 131 LEAVVGAV--TLPVSLKMRLGWDDASRNAVELARLAESAGISRLTVHGRTRAQMYDGR-A 187 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK--- 238 DW AIG +++ +++PVIANG++ + A++ +A++G D VMIGR AL P L + Sbjct: 188 DWPAIGLVKRAVSLPVIANGDVTNLSEAREILAVTGADGVMIGRAALGAPWLPGAIARAI 247 Query: 239 ----YNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATEL 290 P E A++ + + ++ + + + + + Sbjct: 248 AAGTRETPPPALAERAAVMAAHLEGLLACHGLERGLKTSRKHMGWYARTMPQGADF 303 >UniRef50_Q6AJZ5 tRNA-dihydrouridine synthase n=1 Tax=Desulfotalea psychrophila RepID=Q6AJZ5_DESPS Length = 328 Score = 275 bits (704), Expect = 1e-72, Method: Composition-based stats. Identities = 81/313 (25%), Positives = 137/313 (43%), Gaps = 14/313 (4%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 +LAP+ G D R L + D ++E + + + L P Sbjct: 13 FVLAPLAGYTDLSFRLLCHQFG-ADYTVSEMISCHGLFYNQQRTLEMLASL------PEE 65 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 V QL G P +A+ + +D+N GCP + V G GA L+ PEL Y Sbjct: 66 RPVSFQLFGAEPDIMAKATLILNDFQPDMIDINMGCPVRKVTKKGAGAALMSTPELAYDV 125 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGEKK-FEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 +++ + +PV+VK R G S E E ++AGA + VHGRT+ Q + Sbjct: 126 IRSVVDN--TDIPVTVKFRAGVSSTELNGVEFGLMTERAGAAAVAVHGRTRAQAFSG-VA 182 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNE 241 D I ++++ L+IPVI NG+I +Q MA +GCD VM+GRGAL P + + + Sbjct: 183 DRGIIKEVKEALSIPVIGNGDILSYQDGLDMMAETGCDGVMVGRGALGNPWVFQ---ASG 239 Query: 242 PRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNNSP 301 + A ++ L ++ + + IK +S K+ ++ L + ++ Sbjct: 240 KPANIHGLAAGALQHLLLMERFNPVERVLGLIKNHMSKYFKDMPGSSRLRTAIFTASSFL 299 Query: 302 DIARAIQAIDIEK 314 ++ I + + Sbjct: 300 ELKGMITELSNPE 312 >UniRef50_Q9RDC6 Putative uncharacterized protein SCO2497 n=4 Tax=Bacteria RepID=Q9RDC6_STRCO Length = 406 Score = 275 bits (703), Expect = 2e-72, Method: Composition-based stats. Identities = 78/342 (22%), Positives = 140/342 (40%), Gaps = 38/342 (11%) Query: 3 VLLAPMEGVLDSLVRELLTEV-NDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 V+LAPM G+ ++ R L E L ++E + + R +Q + Sbjct: 27 VVLAPMAGITNAPFRTLCREFSGGKGLFVSEMITTRALV------ERNEKTMQLIHFDAT 80 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELG-SWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 T +QL G P + + E G + +DLN GCP V GGG+ L L+ Sbjct: 81 ETPRSIQLYGVDPVTVGKAVRMIAEEGLADHIDLNFGCPVPKVTRKGGGSALPYKRHLLR 140 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKF-EIADAVQQAGATELVVHGRTKEQGYRAE 179 + LPV++K+R G D + + + G T + +HGRT Q Y Sbjct: 141 AIVREAV-TGAGDLPVTMKMRKGLDDDHLTYLDAGRIAVEEGVTAIALHGRTTAQHY-GG 198 Query: 180 HIDWQAIGDIRQRL-NIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK 238 DW AI +++ + IPV+ NG+IW + A + + +GCD V++GRG L P L + Sbjct: 199 TADWDAIARLKEHVPEIPVLGNGDIWSAEDALRMVRETGCDGVVVGRGCLGRPWLFADLV 258 Query: 239 YNEP-------RMPWPEVVALLQKYTRLEKQGDTGLYHVAR------------------- 272 R EV ++ ++ L + R Sbjct: 259 AAFEGRTDSFVRPTLREVADVMVRHATLLGEWIENGGTARRATVEGGGGRREGEARGVID 318 Query: 273 IKQWLSYLRKEYDEATELFQHVRVLNNSPDIARAIQAIDIEK 314 ++ +++ K + +E+ + + V ++ + + +D+++ Sbjct: 319 FRKHVAWYLKGFAVGSEMRKRLAVTSSLEALRAGLDELDLDQ 360 >UniRef50_A7H1K2 tRNA-dihydrouridine synthase B n=14 Tax=Campylobacter RepID=A7H1K2_CAMJD Length = 308 Score = 274 bits (702), Expect = 2e-72, Method: Composition-based stats. Identities = 76/310 (24%), Positives = 136/310 (43%), Gaps = 14/310 (4%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 + LAPM G D R ++ + D+ I+E + + L R Sbjct: 9 LFLAPMAGFSDLPFRNVVKKFG-ADITISEMISSNALVYES------SKTLHMLERAELE 61 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGS-WGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 VQ+ G + L + ++ G+D NCGCP V G+ LL++ EL Sbjct: 62 NPYIVQIAGGDKEVLKKAVQMLNKMDFVDGIDFNCGCPVNKVVKQCAGSALLENLELFKN 121 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 ++E L SVK RLG++ ++A + G + VHGRT++Q Y + Sbjct: 122 LVGVIKENNKKSLT-SVKFRLGFNEKYP-EKMAKICESLGVDFVSVHGRTRKQLYSGK-A 178 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNE 241 D+++I + + IPVIANG+I + Q+A++ I+ CD +MIGR ++ P + +K + Sbjct: 179 DYESIASAKASVKIPVIANGDI-NAQNAKEVYKITKCDGLMIGRASVGNPWIFYEIKSGK 237 Query: 242 PRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNNSP 301 + +L + + K + R + L K + +A+ V ++N+ Sbjct: 238 SVDEKLKKEIILTHFDEMIKHYKDQGVSIFR--KHLHEYSKGHKDASAFRDGVNRIDNAE 295 Query: 302 DIARAIQAID 311 + + I+ Sbjct: 296 KMRKKIEEFF 305 >UniRef50_C8X244 Dihydrouridine synthase DuS n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X244_DESRD Length = 328 Score = 274 bits (702), Expect = 2e-72, Method: Composition-based stats. Identities = 76/313 (24%), Positives = 145/313 (46%), Gaps = 15/313 (4%) Query: 4 LLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGT 63 LAP+ G D R L E N + TE + V + + + + P+ T Sbjct: 20 WLAPLAGFTDLPFRLLCRE-NGARVAHTEMISVKGLIYNSQGTWDLL------ATAPADT 72 Query: 64 LVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGA 123 + VQL G P A+ E G +DLN GCP + V +G GA L++DP+ + + Sbjct: 73 PLVVQLFGADPDCFAQPVRWLTERGFHWIDLNAGCPVRKVIKTGAGAALMEDPQRLVRIM 132 Query: 124 KAMREAVPAHLPVSVKVRLGWD-SGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHID 182 + + A P VK+RL D S + + D + +AG + + +H RT QGY Sbjct: 133 QTIGRAAPVQ--AGVKLRLPADGSTDGLLRLRDTLARAGVSWITLHPRTARQGY-GGLAQ 189 Query: 183 WQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRV----VK 238 W A+ + + +P++A+G++W+ Q+A++C +G D +M RGAL+ P + + Sbjct: 190 WSALSRMAESSPVPIVASGDLWNAQAARRCFEQTGVDGIMFARGALHNPRIFKADLATGA 249 Query: 239 YNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLN 298 +P + AL++++ +L ++ D + +++ ++ K + A + + + Sbjct: 250 EEDPCTDTASIAALVRRHGQLCRRYDPSRSMLLKMRSFIPRYVKGFPGAKQARKGIIACQ 309 Query: 299 NSPDIARAIQAID 311 + + ++ Sbjct: 310 DWEAFEQYADQLE 322 >UniRef50_Q88DK5 tRNA-dihydrouridine synthase B n=460 Tax=Proteobacteria RepID=DUSB_PSEPK Length = 337 Score = 274 bits (702), Expect = 3e-72, Method: Composition-based stats. Identities = 86/319 (26%), Positives = 142/319 (44%), Gaps = 17/319 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 ++LAPM GV D R L + + ++E V L + L+ Sbjct: 15 LILAPMAGVTDQPFRTLCQRLG-AGMVVSEMVSSDMSLWNSRK-----SSLRRIHEGDPE 68 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 VQ+ G Q +A A VE G+ +D+N GCP+K V G+ LL+D L+ + Sbjct: 69 -PRSVQIAGGDAQMMAAAAKANVEAGAQIIDINMGCPAKKVCNKAAGSALLRDEALVSEI 127 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGEKK-FEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 A+ AV +PV++K+R GWD K +A +QAG L VHGRT+ Y E Sbjct: 128 LHAVVSAV--DVPVTLKIRTGWDRANKNGLNVAKIAEQAGIQALAVHGRTRADLYTGE-A 184 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY-- 239 ++ IG I+Q ++IPV ANG+I + A+ + +G D ++IGR A P + R +++ Sbjct: 185 EYDTIGAIKQAVSIPVFANGDITSPEKARAVLETTGVDGLLIGRAAQGRPWIFREIEHYL 244 Query: 240 ----NEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVR 295 + P EV +L ++ + V ++ + + E Sbjct: 245 RTGEHLPAPQLDEVERILLEHLAALHAFYGDVMGVRIARKHVGWYLATRPGGKEFRARFN 304 Query: 296 VLNNSPDIARAIQAIDIEK 314 L ++ ++A E+ Sbjct: 305 ALEDTQAQCANVRAFFSER 323 >UniRef50_D1AWB1 Dihydrouridine synthase DuS n=12 Tax=Fusobacteriaceae RepID=D1AWB1_STRM9 Length = 305 Score = 274 bits (700), Expect = 4e-72, Method: Composition-based stats. Identities = 78/316 (24%), Positives = 151/316 (47%), Gaps = 20/316 (6%) Query: 1 MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTP 60 +++ APM GV D R+++ + D TE V V K+ ++ P++ Sbjct: 3 LKIYTAPMAGVTDYTFRKIIEDF-KPDFTFTEMVSV------DKLLYKEVPKILKLRENN 55 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 VQ+ G+ + + A +G ++LNCGCP K + SG G+ L+KDP I Sbjct: 56 -----IVQIFGKDIYLMQKAAKYIESMGVKEINLNCGCPMKKIVNSGHGSALIKDPRKIE 110 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 + A+RE + +S+K+R+G+D E EIA ++ + +++HGRT+EQ Y E Sbjct: 111 EILTALREVLDPKTALSLKIRVGYDKPENYLEIAKIAEKLKCSNIIIHGRTREQKYSGE- 169 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 DW+ I +++ +NI VI NG+I+D ++A + + + D +M+ RG L P L +K Sbjct: 170 ADWKYIKEVKDNVNIKVIGNGDIFDAKNAIEKIRETNVDGIMLARGILGNPWLISQIKEL 229 Query: 241 ------EPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHV 294 + + + + + ++ + + ++ I++++ + + E + Sbjct: 230 FEFGEIKTIVRDIDRINMAIRHVKEYAIDNENVFFPD-IRKYIIWYIENIKGIDETKNLI 288 Query: 295 RVLNNSPDIARAIQAI 310 +I ++ I Sbjct: 289 NQSFEYDEIIELLEKI 304 >UniRef50_B1C9Q3 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C9Q3_9FIRM Length = 329 Score = 273 bits (699), Expect = 6e-72, Method: Composition-based stats. Identities = 78/316 (24%), Positives = 144/316 (45%), Gaps = 14/316 (4%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 + +LAPM GV R + E+ + I+E V K P ++ Sbjct: 17 KAILAPMAGVTTLPYRLFMREMG-CKIFISEMVSAKGLYYKSKNTF---PLMETNELEHK 72 Query: 62 GTLVRVQLLGQFPQWLAENAARAV-ELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 ++ +Q+ G P+ + E R + + +D+N GCP K + +G G+ LLKD + Sbjct: 73 DSVTGIQIFGSEPEIMGEITERYINDTAFDFIDINMGCPMKKIVNNGDGSALLKDLDKAN 132 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 + + ++ A + PVSVKVRLG++ +I A++ GA + VHGRT+EQ + E Sbjct: 133 KVVREVKSA--SSKPVSVKVRLGFNEN-IIEDIIKAIEDGGADMITVHGRTREQVFTGE- 188 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY- 239 +D+ I ++ ++P+IANG++ ++ A++ M +G D VMIGRGA P + Sbjct: 189 VDYDGIKKAKETASVPLIANGDLDNYLKAKEKMDYTGADGVMIGRGANYDPFIFSQFNEC 248 Query: 240 ----NEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVR 295 + + +K+ + + V +++L + K + ++ + Sbjct: 249 ISGKKVSEYSLRDKIDAARKHFEIHLKYSKDKKKVIEFRKYLYWYIKGIKNSAKIRNSIN 308 Query: 296 VLNNSPDIARAIQAID 311 +N + ID Sbjct: 309 NVNEIDQVYEIFNRID 324 >UniRef50_A9A4W7 Putative TIM-barrel protein, nifR3 family n=1 Tax=Nitrosopumilus maritimus SCM1 RepID=A9A4W7_NITMS Length = 320 Score = 273 bits (698), Expect = 7e-72, Method: Composition-based stats. Identities = 82/313 (26%), Positives = 130/313 (41%), Gaps = 10/313 (3%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQN-ASRTP 60 R LAPM GV D +R ++ L +TEF + + + +Q + Sbjct: 8 RAFLAPMAGVSDPALRLQCKKMG-AGLVVTEFTSIHSIIAKEEQLKENMKTIQEFIEFSE 66 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 + VQL G L E AA VE +D N GCP+ + G LL++ L Sbjct: 67 QERPISVQLFGSDLYAL-EKAATIVEPYFDIIDYNMGCPAPHITQQMAGGALLQEVNLTQ 125 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKF--EIADAVQQAGATELVVHGRTKEQGYRA 178 Q + + AV PV++K+R G K +IA+ + G + H RT QGY Sbjct: 126 QIFETLVNAVKK--PVTLKIRSGVTDASKFLFRDIAEIAEDQGIQMITFHPRTVSQGYSG 183 Query: 179 EHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK 238 DW+ I ++++ NIPV+ NG+I + A+ + +GCD VMIGRGA+ P L + Sbjct: 184 S-ADWKLIKELKEISNIPVVGNGDITTPEDAKMMLDETGCDYVMIGRGAMGNPFLFEQIN 242 Query: 239 YNEPRMPWPE--VVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRV 296 + E L + + + IK K ++L + Sbjct: 243 DYLKTGSYKEYSFKDRLDSFFDYLHLTNQYKIKFSNIKSQAMRFTKGLKGGSKLRSKITF 302 Query: 297 LNNSPDIARAIQA 309 N D+ + ++ Sbjct: 303 SKNLEDLEKIMRE 315 >UniRef50_A6NW05 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NW05_9BACE Length = 307 Score = 272 bits (697), Expect = 9e-72, Method: Composition-based stats. Identities = 85/314 (27%), Positives = 137/314 (43%), Gaps = 17/314 (5%) Query: 8 MEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGTLVRV 67 M GV D R + E+ ITE V K + Sbjct: 1 MAGVTDMAFRTICRELG-AGYTITEMVSAKALCYQDKK------SIPLLKLGEGEHPCAA 53 Query: 68 QLLGQFPQWLAENAARAVEL-GSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAM 126 Q+ G + + E AA A E+ G+ +D+N GCP V SG G+ L++D + + A+A+ Sbjct: 54 QIFGSDEKCMEEAAAIAGEVSGADIIDINMGCPVPKVANSGDGSGLMRDVDKAVRVAEAV 113 Query: 127 REAVPAHLPVSVKVRLGWDSGEKK-FEIADAVQQAGATELVVHGRTKEQGYRAEHIDWQA 185 PV+VK RLGWD G E A A++ AG + + VHGRT+ Q Y A +W Sbjct: 114 VR-GAGERPVTVKFRLGWDKGSINCVEFAKAMEAAGVSAVAVHGRTRTQMY-AGTANWDY 171 Query: 186 IGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNEPRMP 245 I +++Q ++IPVIANG+++D +A + +G D MIGRG P + + + Sbjct: 172 IREVKQAVSIPVIANGDVFDGPAAAHILRYTGADMAMIGRGCFGNPWVFQQARAALEGEE 231 Query: 246 WPEVVALLQKYTRLEKQGDTGLYHVARI------KQWLSYLRKEYDEATELFQHVRVLNN 299 P + L ++ +Q + H ++ ++ K A + + ++ Sbjct: 232 IPPLPPLAERVDTAVRQFELAAAHKGEHIACLEARKQYAWYLKGVAFAGYYKEQISHIST 291 Query: 300 SPDIARAIQAIDIE 313 DI R I + Sbjct: 292 LEDIYRITAGIKRD 305 >UniRef50_D0U4P6 tRNA-dihydrouridine synthase n=2 Tax=uncultured SUP05 cluster bacterium RepID=D0U4P6_9GAMM Length = 324 Score = 272 bits (697), Expect = 1e-71, Method: Composition-based stats. Identities = 79/308 (25%), Positives = 136/308 (44%), Gaps = 21/308 (6%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLP-VKVFHRICPELQNASRTP 60 +V LAPM G D R + L +E V + LL K HR+ + Sbjct: 13 QVFLAPMAGTSDKPFRAICRAQGAA-LTTSEMVVIQKHLLGTNKSKHRL-------DFSG 64 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 + +Q+ G LA +A +A++ G+ +D+N GCP+K V G+ L++D L+ Sbjct: 65 EPAPISIQIAGSQADELAYSAQQALKFGADIIDINMGCPAKKVCNKAAGSALMQDEALVK 124 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWD-SGEKKFEIADAVQQAGATELVVHGRTKEQGYRAE 179 A+ AV +PV++K+R GW+ S + IA ++AG L VHGRT+E Y Sbjct: 125 SILNAVVSAV--DIPVTLKMRTGWNVSNKNAPTIAKIAEEAGIQMLSVHGRTREDKYTG- 181 Query: 180 HIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY 239 ++ I ++ ++ IPVIANG+I + AQ + +G D VM+GR P + + + Sbjct: 182 MAEYDTIKAVKSQVGIPVIANGDITSAKKAQSVLQYTGADGVMVGRATQGNPWIIHEIDH 241 Query: 240 ------NEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDE--ATELF 291 +P + + + ++ + + DE A + Sbjct: 242 YLKTGQKATDIPLNVKKQTILDHIKQIHAFYGEKLGTQLSRKHIFWYATHLDEKNAQTFW 301 Query: 292 QHVRVLNN 299 + V + + Sbjct: 302 EKVNKITD 309 >UniRef50_Q8PX79 NifR3-like protein n=3 Tax=Methanosarcina RepID=Q8PX79_METMA Length = 323 Score = 272 bits (695), Expect = 1e-71, Method: Composition-based stats. Identities = 87/316 (27%), Positives = 143/316 (45%), Gaps = 16/316 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 +LLAPM V + R L DL TE + V L + + Sbjct: 17 LLLAPMADVTNLAFRLLCRRYG-ADLTYTEMINVDALLNESRK------SFIKGLSSEED 69 Query: 63 TLVRVQLLGQFPQWLAENAARAVELG-SWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 VQL+G P L A E +D+N GCP++ + G+G G+ LL PEL+Y Sbjct: 70 RPFGVQLVGGCPDKLKRAALFIEEEYRPEIIDVNMGCPARCITGAGCGSALLNSPELVYS 129 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 + E++ PVS K+RL EK EIA +++AGA+ + VHGRT Q Y Sbjct: 130 IILELTESL--DTPVSAKIRL-LGREEKTLEIARLIEKAGASAVTVHGRTAAQMYSGNS- 185 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY-- 239 + + I ++ L+IPVIANG++ D +SA++ + ++GCD +MIGR A+ P + + +++ Sbjct: 186 NLEGIRAVKNELSIPVIANGDVKDEESAERTLELTGCDGLMIGRAAMGNPFIFKKIRHYL 245 Query: 240 --NEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVL 297 E L + + + L ++ + K + + + + L Sbjct: 246 ETGEKLGADKPFRQLEDFNSYISLLEEHNLLSSINLRMHAHWFTKGLRGSRHVREKINGL 305 Query: 298 NNSPDIARAIQAIDIE 313 + I I++ E Sbjct: 306 EDGKAITELIRSFCQE 321 >UniRef50_A6GHV6 Dihydrouridine synthase family protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GHV6_9DELT Length = 321 Score = 272 bits (695), Expect = 1e-71, Method: Composition-based stats. Identities = 122/309 (39%), Positives = 171/309 (55%), Gaps = 7/309 (2%) Query: 8 MEGVLDSLVRELLTEV----NDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGT 63 M+GV D RE LT + + LC++EFVRV Q + +VF R CPEL +T +G Sbjct: 1 MDGVTDGSYRECLTALFGGRSGISLCVSEFVRVTRQPVVERVFLRHCPELARGGKTRAGV 60 Query: 64 LVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGA 123 V VQLLG P W+A A AV LG+ G+DLN GCP+KTVN S GGATLLKDP + Sbjct: 61 PVFVQLLGGEPHWMARAAETAVALGAPGIDLNFGCPAKTVNSSDGGATLLKDPCRVEAVT 120 Query: 124 KAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHIDW 183 +A+R AVPA LPV+VK+R+GW+ EIA A + GA+ L +HGRT+ Q Y+ +D+ Sbjct: 121 RAVRAAVPAELPVTVKIRVGWEDPSPVVEIARAAEAGGASWLTIHGRTRRQLYK-PPVDY 179 Query: 184 QAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNE-P 242 +AIG + +++ V+ANG+++ S + SGC A MIGRGA+ P L + + Sbjct: 180 EAIGRAQAAVSMAVVANGDLFGVPSLFEAAQRSGCTAFMIGRGAMGRPELFARARGTQRA 239 Query: 243 RMPWPEVVALLQKY-TRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNNSP 301 + ALL Y L G + R+KQWL + F+ + L Sbjct: 240 ALDPRPFEALLDVYADTLLASGANERNTLGRLKQWLRMAAMLRADMKLAFEQCKRLQTLD 299 Query: 302 DIARAIQAI 310 + ++ I Sbjct: 300 EARAKLREI 308 >UniRef50_C0W327 Dihydrouridine synthase n=2 Tax=Actinomyces RepID=C0W327_9ACTO Length = 438 Score = 272 bits (695), Expect = 2e-71, Method: Composition-based stats. Identities = 85/348 (24%), Positives = 138/348 (39%), Gaps = 49/348 (14%) Query: 5 LAPMEGVLDSLVRELLTEVN-------------------------DYDLCITEFVRVVDQ 39 LAPM GV ++ R L E L +TE V Sbjct: 40 LAPMAGVTNASFRRLCREQGESALPAHARPAAAGPLPTDDGGLLAPAGLYVTEMVTTRAL 99 Query: 40 LLPVKVFHRICPELQNASRTPSGTLVRVQLLGQFPQWLAENAARAVELG-SWGVDLNCGC 98 + R L P+ + +QL G P + A VE + +DLN GC Sbjct: 100 V------ERNDKTLAMVRTDPTERVRSIQLYGVDPVIAGKAARILVEEDLADHIDLNFGC 153 Query: 99 PSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHL---------PVSVKVRLGWDSGEK 149 P V GGGA L +L++ + + + PV+VK+R+G D + Sbjct: 154 PVPKVTRKGGGAALPWKKDLLHAILREVVRGAEEGVRLGRREREVPVTVKMRIGVDEEHE 213 Query: 150 KF-EIADAVQQAGATELVVHGRTKEQGYRAEHIDWQAIGDIRQRLNIPVIANGEIWDWQS 208 + + A A Q AG L +HGRT Q Y A DW AI +++ IPV+ NG+ W Sbjct: 214 TYLDAARAAQDAGVAALALHGRTARQHY-AGKADWSAIARLKEACRIPVLGNGDTWTGSH 272 Query: 209 AQQCMAISGCDAVMIGRGALNIPNLSRVVKY------NEPRMPWPEVVALLQKYTRLEKQ 262 A + M +GCD V++GRG P L + + V+A ++ + RL Sbjct: 273 ALEMMRQTGCDGVVVGRGCQGRPWLFADIVHALSGSVERTHPDLDAVIATIRAHARLLAA 332 Query: 263 GDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNNSPDIARAIQAI 310 V +++ + + K Y + + +++ ++ ++A+ Sbjct: 333 ELGEDRGVRDLRKHIGWYLKGYPVGGQARGDLMKVSSLAELDAGLEAM 380 >UniRef50_Q0BSS6 tRNA-dihydrouridine synthase n=15 Tax=Alphaproteobacteria RepID=Q0BSS6_GRABC Length = 370 Score = 271 bits (694), Expect = 2e-71, Method: Composition-based stats. Identities = 89/319 (27%), Positives = 142/319 (44%), Gaps = 19/319 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 V+LAPM GV D R L E+ + ++E + + K R+ S Sbjct: 43 VILAPMSGVTDLPFRMLAREMG-TGMVVSEMIASWAMVRENKTTLRMAEPAGPPSPGSPN 101 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTV-NGSGGGATLLKDPELIYQ 121 +QL G P+ +AE A A++ G+ +D+N GCP K V G G+ L++D + Sbjct: 102 ---ALQLAGCDPEAMAEAARIAIDKGAELIDINFGCPVKKVAVGQSAGSALMRDEVTAAK 158 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 +A +AV +PV++K+R+GWD +A + +G + VHGRT++Q Y + Sbjct: 159 ILEATVKAVS--VPVTLKMRMGWDHQSLNAPALAKIAEASGIRMITVHGRTRQQFYEGK- 215 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY- 239 DW + ++Q ++PVI NG+I + A + AISG D VM+GRG P R V Sbjct: 216 ADWAFVARVKQATSLPVIVNGDIQTVEQAAEARAISGADGVMVGRGCYGRPWFPRQVAAY 275 Query: 240 -----NEPRMPWPEVVALLQKY--TRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQ 292 + P P E +L + L G +AR + +S+ + Sbjct: 276 LRDGVHIPEPPLSERKQILLNHYDAMLRCFGTDAGMRLAR--KHVSWYTTGLHGSAAFRA 333 Query: 293 HVRVLNNSPDIARAIQAID 311 V L + + I Sbjct: 334 TVNRLADPSQVLALIDTFF 352 >UniRef50_C0QKE4 Dhs2 n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QKE4_DESAH Length = 330 Score = 271 bits (693), Expect = 2e-71, Method: Composition-based stats. Identities = 75/319 (23%), Positives = 134/319 (42%), Gaps = 17/319 (5%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 R +LAP+ G+ + R ++ + L +E V + +Q Sbjct: 11 RTVLAPLAGITNLPFR-IIAKGCGCTLVCSEMVSAKGLEFNSEKT------VQLLRTDAC 63 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELG-SWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 V VQ+ G +A A E + +D+N GC K V +G G L+KD + Sbjct: 64 ERPVSVQIFGAEALSMANAARWIAERNVADIIDINFGCSVKKVARTGAGVALMKDMDNAR 123 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDS-GEKKFEIADAVQQAGATELVVHGRTKEQGYRAE 179 +A+R AV +P ++K+R GWDS + F+IA + G + +H RT QG+R Sbjct: 124 AIIRAVRRAVS--MPFTIKIRSGWDSSASQAFDIARMAEDNGVDAIAIHPRTAAQGFRGR 181 Query: 180 HIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY 239 DW I +++ L IPVI NG+I + + +GCD VM+GR A+ P + ++ Sbjct: 182 -ADWSMIARLKEMLTIPVIGNGDITTPEQGVAMIQETGCDGVMVGRAAMGNPFIFGGIEA 240 Query: 240 NEPRMPW-----PEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHV 294 W E+ ++++ ++ L++ K + A+ + + Sbjct: 241 LLRGEAWNEPSPMEIFQIMEEMVESHVAYLGERPACRMMRSRLAWFVKGFAGASVFRREL 300 Query: 295 RVLNNSPDIARAIQAIDIE 313 + I+ + + Sbjct: 301 TGIETLDQAMALIRRYEAD 319 >UniRef50_Q2RZL4 NifR3 family enzyme n=2 Tax=Rhodothermaceae RepID=Q2RZL4_SALRD Length = 443 Score = 271 bits (693), Expect = 3e-71, Method: Composition-based stats. Identities = 78/312 (25%), Positives = 130/312 (41%), Gaps = 19/312 (6%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 + LAPME V D R L D+ TEFV L + H+ Sbjct: 77 LFLAPMEDVSDPPFRILCKRYG-ADMMYTEFVSSAGLLREQEHEHQKLEIFD------EE 129 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 + +Q+ G + G +D+N GCP + + GGA +L++ + + Sbjct: 130 RPIGIQVWGGGIDEVRNATPMVDAAGPDVIDINFGCPVRKIVQKDGGAGVLRNLDKMRNI 189 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGEK-KFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 A+ E A PV+VK RLGWD ++A ++ G L VH RT+EQ Y+ + Sbjct: 190 TAAVMEE--ATRPVTVKTRLGWDDDSIHIVDVARMLEDMGVAALTVHARTREQKYKGD-A 246 Query: 182 DWQAIGDIRQR--LNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK- 238 W+ + I++ ++P I NG+ D ++ + +G D VM+GRGAL P + K Sbjct: 247 RWEWLRTIKEEGTRDMPFIGNGDALDPEAIEAMFEETGVDGVMLGRGALGNPWIFERAKT 306 Query: 239 -----YNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQH 293 P W E V ++ ++ L+ + V +++ S K + A+ L Sbjct: 307 YMETGELPPPPDWEERVQVVAEHLSLKCEWLGERTGVMEMRKNYSSYFKGFRNASTLRHE 366 Query: 294 VRVLNNSPDIAR 305 + + Sbjct: 367 LMQPETKAGVLE 378 >UniRef50_B9JF02 tRNA-dihydrouridine synthase protein n=12 Tax=Alphaproteobacteria RepID=B9JF02_AGRRK Length = 342 Score = 270 bits (690), Expect = 6e-71, Method: Composition-based stats. Identities = 93/305 (30%), Positives = 146/305 (47%), Gaps = 17/305 (5%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 RV+LAPM GV D R+L L +TE V + + E ++ Sbjct: 28 RVILAPMSGVTDLPFRQLALRYG-AGLVVTEMVASRELVQDTA-------ESWARLKSAG 79 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 VQL G+ W+AE A A + G+ +D+N GCP+K V G G+ L++DP+ Sbjct: 80 LKPHMVQLAGREAYWMAEAAKIAADNGADIIDINMGCPAKKVIGGYSGSALMRDPDHALG 139 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 +A +AV +PV++K+RLGWD IA ++AG + +HGRT+ Q Y Sbjct: 140 LIEATVKAV--DVPVTLKMRLGWDENSINAPHIARRAEEAGIQLVTIHGRTRMQFYEGR- 196 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK-Y 239 DW AI +R ++IP++ANG++ + A + + SG DAVM+GRG P + V+ + Sbjct: 197 ADWDAIRAVRDVISIPLVANGDVDTPEDASEILRRSGADAVMVGRGCQGRPWHAGVLAGH 256 Query: 240 NEPRMPWPEVVALLQKYTRLEKQGDT-GLYHVARIKQW-LSYLRKEYDEATELFQHVRVL 297 EP +AL L+ G+ G+ H + W L + A + + Sbjct: 257 REPDRGEIADIALEHYRMMLDFYGEAVGIRHARKHLGWYLDRYAPTINGAEKAR--IMTS 314 Query: 298 NNSPD 302 +S + Sbjct: 315 KDSQE 319 >UniRef50_Q0F181 Dihydrouridine synthase TIM-barrel protein nifR3 n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F181_9PROT Length = 341 Score = 269 bits (689), Expect = 7e-71, Method: Composition-based stats. Identities = 79/317 (24%), Positives = 139/317 (43%), Gaps = 17/317 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 ++LAPM G+ D R + L +TE + + + R+ + Sbjct: 20 LVLAPMAGITDLPFRRICKRFG-VGLMVTEMIASRAVDMGRERTERMAELGDD------E 72 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 V +Q+ G P+++ E A AV G+ VD+N GCP K + G+ +L+D Sbjct: 73 HPVSIQIAGSDPEFVTEAARWAVGHGADFVDINMGCPVKKICKQVAGSAMLRD--EALVA 130 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGEKKFE-IADAVQQAGATELVVHGRTKEQGYRAEHI 181 +PV++K+R GWD K + IA + +G L VHGRT+ Q + H Sbjct: 131 RVLAAVVAAVDVPVTLKIRTGWDDQSKNVQNIARIAEDSGIQLLTVHGRTRAQMFHG-HA 189 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNE 241 W+ IG + ++IPVI NG+I D +SA++ + +S CD VM+GR P + V Sbjct: 190 CWEDIGLAKAAVSIPVIGNGDIVDAESAREMIRVSNCDGVMVGRAVQGNPWVLGEVHAAI 249 Query: 242 PRMPWPEVVALLQKYTRLEKQGDTGLYHVA------RIKQWLSYLRKEYDEATELFQHVR 295 +P P +++ +++ + H ++ + + K + E Q + Sbjct: 250 AGLPIPPKPTAAERWLIVDEHMRHLVEHHGIRTASKLARKHVIWYSKGLHGSAEFRQSFQ 309 Query: 296 VLNNSPDIARAIQAIDI 312 V+ + + A + Sbjct: 310 VMTDWQQMMDFAAAYFL 326 >UniRef50_D1R8P9 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R8P9_9CHLA Length = 342 Score = 269 bits (688), Expect = 9e-71, Method: Composition-based stats. Identities = 89/317 (28%), Positives = 143/317 (45%), Gaps = 19/317 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 V AP+ G D R++ + L E V++ + R+ ++ Sbjct: 18 VFYAPLAGCSDFPFRQMSARYS-PGLMYCEMVKMDALVRHDPNTFRMLDFDKDM------ 70 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 + QL G PQ A+ A +LG VDLNCGCP V G G+ LLK+P LI + Sbjct: 71 HPIGGQLCGSKPQLAAKAAKIIEDLGFDVVDLNCGCPVDKVTKDGSGSGLLKNPLLIGEI 130 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGEK-KFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 M AV +PV+VK+R GWD EI ++AGA + +HGRT++Q YR Sbjct: 131 LSEMVAAV--KIPVTVKIRAGWDDENLCAEEITQIAEKAGAKAITIHGRTRQQAYRG-PA 187 Query: 182 DWQAIGDIRQ-RLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVV--- 237 +W I +Q +I VI NG++ D SA++ +GCDAV++ RG + P +++ + Sbjct: 188 NWDHIKASKQVAKHIKVIGNGDVMDPTSAKRMFEYTGCDAVLVARGTMGQPWIAQDILNY 247 Query: 238 -KYNEPRMPWPE--VVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHV 294 + R+ PE AL + + E+ + V +++ + K E + Sbjct: 248 LQGGTIRVHTPEDCRQALYEHFLCTERYYN-PRQVVIEMRRVGCWYIKSSGGTREFRGLI 306 Query: 295 RVLNNSPDIARAIQAID 311 ++ + IQ Sbjct: 307 SRASSPDQVKDLIQNFS 323 >UniRef50_B9NQS6 NifR3 family protein n=3 Tax=Rhodobacteraceae RepID=B9NQS6_9RHOB Length = 364 Score = 269 bits (688), Expect = 9e-71, Method: Composition-based stats. Identities = 89/314 (28%), Positives = 150/314 (47%), Gaps = 21/314 (6%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 VLLAPM G+ D R+L+ + ++E V + + + T Sbjct: 51 VLLAPMAGITDRPFRDLVMRFG-AGMVVSEMVASQEMVQAKPGVRERAELSADVENT--- 106 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 VQL G+ W+AE A + + G+ +D+N GCP+K V G+ LLK P+ Sbjct: 107 ---AVQLAGREAHWMAEAARQVADRGARVIDINMGCPAKKVTNGYSGSALLKTPDHALTL 163 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSG-EKKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 +A+ AV +PV++K RLGWD ++A Q AG + +HGRT+ Q Y+ Sbjct: 164 IEAVVAAV--DIPVTLKTRLGWDDSLLNAPDVARRAQDAGIQMVTIHGRTRCQFYKGR-A 220 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNE 241 DWQAIG +++ +++PVIANG+I +A+ + SG D VM+GRGA P L + ++ Sbjct: 221 DWQAIGAVKEAVSVPVIANGDITGPGAARTALDQSGADGVMVGRGAQGRPWLLAQICHDL 280 Query: 242 PRMPWPEV------VALLQKY--TRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQH 293 + P++ + +++ + L G VAR + L + + L + Sbjct: 281 YGIAPPDIPTGSALIDMVRGHYQAMLAFYGTDLGLRVAR--KHLGWYMDDAGTPATLRRA 338 Query: 294 VRVLNNSPDIARAI 307 V ++ ++ + Sbjct: 339 VLTSRDTGEVLHLL 352 >UniRef50_C8W6Y9 TIM-barrel protein, nifR3 family n=1 Tax=Atopobium parvulum DSM 20469 RepID=C8W6Y9_ATOPD Length = 363 Score = 269 bits (688), Expect = 1e-70, Method: Composition-based stats. Identities = 88/318 (27%), Positives = 139/318 (43%), Gaps = 18/318 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 VL+APM GV D + R + L +E V V + + L + Sbjct: 39 VLMAPMAGVSDGVYRTM-ARAGGAGLAYSEMVSVAGIHFGGEKTWELVEPLS------TE 91 Query: 63 TLVRVQLLGQFPQWLAENAARAVE-LGSWG--VDLNCGCPSKTVNGSGGGATLLKDPELI 119 + VQL G P+ E AA+ E LG+ +D+N CP V G G+ LL PEL Sbjct: 92 PDIAVQLFGSKPEQFKEAAAQISERLGNKLALIDINMACPVPKVVKKGEGSALLDTPELA 151 Query: 120 YQGAKAMREAVPAHLPVSVKVRLGWD-SGEKKFEIADAVQQAGATELVVHGRTKEQGYRA 178 KA V +PV+VK+R G E E A A++ AGA+ + VHGR Q YR Sbjct: 152 ANLVKACLSEV--TVPVTVKIRRGRRQDEEVAPEFARAMEAAGASAIAVHGRFATQMYRG 209 Query: 179 EHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK 238 + +W+ + + ++IPVI +G++ + + +G AVMI RG P + + + Sbjct: 210 Q-AEWETVNRVCDAVSIPVIGSGDMLSAEDVAHALKETGVTAVMIARGTYGNPWIFKNTQ 268 Query: 239 Y-NEPRMPW-PEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRV 296 E + P+ P V +L + K D H+AR + ++ + A Sbjct: 269 ALLEGKTPFVPSVDQMLASFMMHVKLLDAAHIHIARARSLSTWYFRGIPNAAYWRGKSVR 328 Query: 297 LNNSPDIARAIQAIDIEK 314 + D A++I++ Sbjct: 329 CVTAQDFIDL--ALEIKE 344 >UniRef50_A1VHK2 Dihydrouridine synthase, DuS n=10 Tax=Desulfovibrionaceae RepID=A1VHK2_DESVV Length = 449 Score = 269 bits (687), Expect = 1e-70, Method: Composition-based stats. Identities = 80/297 (26%), Positives = 131/297 (44%), Gaps = 15/297 (5%) Query: 4 LLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGT 63 LAP+ G D R L + +C TE V + + + TP Sbjct: 35 WLAPLAGYSDLSFRLLCRKAGAA-VCCTEMVSAKGLIYYSPGTRDLL------ATTPEDA 87 Query: 64 LVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGA 123 + VQL G P + +E G DLN GC V +G GA +L+D A Sbjct: 88 PLVVQLFGCDPDIMVRAMEPLLEQGFRWFDLNMGCSVPKVVKTGCGAAMLRDVPQALAVA 147 Query: 124 KAMREAVPAHLPVSVKVRLGWDSGEK-KFEIADAVQQAGATELVVHGRTKEQGYRAEHID 182 +AM A V K RLGWD G++ ++ A+ GA + +H R QG+ E Sbjct: 148 RAMLRTAGAGR-VGFKFRLGWDVGQEVWADLGRALADLGAGWVTLHPRYARQGFSGE-AR 205 Query: 183 WQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLS-----RVV 237 W +G++ + +++PVIA+G+++ +C+ +G +VM RGALN P + RV Sbjct: 206 WSTLGELVRAVSVPVIASGDLFTAADGVRCLRETGVASVMYARGALNDPGVFHAHRERVA 265 Query: 238 KYNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHV 294 +P + AL+ ++ L +Q G + +++ ++ + A L QH+ Sbjct: 266 GRPDPGYTPQRLRALITRHAELARQYAPGRSALLKMRTFVPRYVRHLPGARALRQHL 322 >UniRef50_Q5M689 Possible transcriptional regulator n=25 Tax=Streptococcus RepID=Q5M689_STRT2 Length = 350 Score = 268 bits (686), Expect = 2e-70, Method: Composition-based stats. Identities = 78/313 (24%), Positives = 135/313 (43%), Gaps = 18/313 (5%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 R +LAPM GV +S R + E + L + E + L + L + Sbjct: 43 RTVLAPMAGVTNSAFRTIAKEFS-AGLVVMEMISEKGLLYNNEKT------LHMLHIDEN 95 Query: 62 GTLVRVQLLGQFPQWLAENAARAV-ELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 + +QL G + L A + VD+N GCP V + GA LKDP+ IY Sbjct: 96 EHPMSIQLFGGDAEGLKRAADFIQTNTKADIVDINMGCPVNKVVKNEAGAKWLKDPDKIY 155 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 K + + +P++VK+R GW + E A A + AG + L +HGRT+EQ Y H Sbjct: 156 HIVKEVTSVL--DIPLTVKMRTGWSDSDLAVENALAAESAGVSALAMHGRTREQMYTG-H 212 Query: 181 IDWQAIGDIRQRL-NIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY 239 D + + + + + IP I NG++ + Q A+ + G DAVM+GR A+N P + + + Sbjct: 213 CDHETLARVAKAITKIPFIGNGDVRNVQDAKLMIEELGVDAVMVGRAAMNNPYIFTQINH 272 Query: 240 ------NEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQH 293 P +P+ + + + + + + + V + + + A ++ Sbjct: 273 FFETGEELPDLPFDKKLDIAEDHLKRLVDLKGEMIAVREFRGLAPHYLRGTAGAAKVRGE 332 Query: 294 VRVLNNSPDIARA 306 V + + Sbjct: 333 VSRAESVAQVKEI 345 >UniRef50_C1SJZ7 tRNA-dihydrouridine synthase n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SJZ7_9BACT Length = 340 Score = 268 bits (686), Expect = 2e-70, Method: Composition-based stats. Identities = 84/313 (26%), Positives = 146/313 (46%), Gaps = 15/313 (4%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 +++ AP+ GV R+LL + D L TE V V V + L S T S Sbjct: 19 KLIAAPLAGVTTPPFRKLLRKYFD-GLIYTEMVSVEG------VRRKADRTLSYLSITES 71 Query: 62 GTLVRVQLLGQFPQWLAENAARAVEL-GSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 + VQL G P+ E + + VD+N GCP K V SG G ++KDP Sbjct: 72 DQPIGVQLFGSKPEAYTEAIEVVQDYIKAEFVDINMGCPVKKVLKSGSGCAMMKDPVNSG 131 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKF-EIADAVQQAGATELVVHGRTKEQGYRAE 179 + A ++A+ +P++VK+RLGWD + E+ + GA + VHGRTK + + Sbjct: 132 KIVAAAKKAL-GDVPLTVKIRLGWDKKNLNYNEMIKIAYEEGAEAVTVHGRTKTEMFSG- 189 Query: 180 HIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY 239 +++ I D + +P+I NG++ D + ++ +A +G D VMIGRG + P L + Sbjct: 190 VVNYDLIADAKANAKLPIIGNGDVVDVATYEKMLA-TGVDGVMIGRGMMKQPWLFESILN 248 Query: 240 NEPR---MPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRV 296 M + ++ L+++ R EK ++ + +K+++ + K A L + + Sbjct: 249 GRDPSGYMTYDKLYELIKELVRNEKIYKGEMFFLETVKKYIVWFLKGMPGAAALRNKLYM 308 Query: 297 LNNSPDIARAIQA 309 ++ + Sbjct: 309 CPTETEMFVMLDE 321 >UniRef50_B9JW92 Nitrogen regulation protein n=4 Tax=Rhizobiales RepID=B9JW92_AGRVS Length = 332 Score = 268 bits (686), Expect = 2e-70, Method: Composition-based stats. Identities = 91/280 (32%), Positives = 138/280 (49%), Gaps = 13/280 (4%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 RV+LAPM GV D R+L + L +TE V + + E + + Sbjct: 20 RVVLAPMSGVTDLPFRQLAFR-HGAGLVVTEMVASRELVFNAA-------ESWSRLKGAG 71 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 T VQL G+ P W+AE A A G+ +D+N GCP+K V G G+ L+++PE+ Sbjct: 72 LTPHMVQLAGRDPHWMAEAAKIAEANGADIIDINMGCPAKKVIGGYAGSALMREPEIALA 131 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 +A +AV +PV+VK+RLGWDS +++ Q AG + VHGRT+ Q Y Sbjct: 132 MIEATVKAVS--IPVTVKMRLGWDSDSINAPDLSRRAQDAGVQAITVHGRTRMQFYEGR- 188 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 DW AI +R + IP+IANG+I AQ+ + SG DA+M+GR P + V+ + Sbjct: 189 ADWDAIAAVRDAIYIPLIANGDIDTLGDAQEILRRSGADAIMLGRACQGRPWHAGVLAGH 248 Query: 241 EPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYL 280 P E+ A+ + R V ++ + + Sbjct: 249 APP-SAEEIPAIAVAHYRAMLDHYGAHVGVRHARKHVGWY 287 >UniRef50_D0WEP2 tRNA-dihydrouridine synthase B n=2 Tax=Slackia RepID=D0WEP2_9ACTN Length = 318 Score = 268 bits (685), Expect = 2e-70, Method: Composition-based stats. Identities = 79/315 (25%), Positives = 134/315 (42%), Gaps = 26/315 (8%) Query: 8 MEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGTLVRV 67 M GV D + R L E DL TE + + + V + Sbjct: 1 MAGVNDIVFRRLCLEQG-CDLTYTEMISSKALSFANEKTRHLL------DLAEGERRVAI 53 Query: 68 QLLGQFPQWLAENAARAVELGSWG---VDLNCGCPSKTVNGSGGGATLLKDPELIYQGAK 124 QL G P+ +A AA + +D+N GCP+ + G G+ L++D +L + Sbjct: 54 QLFGHEPKVMAREAAWVEDELGDALALIDINMGCPAHKIVKKGDGSALMRDQDLAASIVR 113 Query: 125 AMREAVPAHLPVSVKVRLGWDSGEKK-FEIADAVQQAGATELVVHGRTKEQGYRAEHIDW 183 + AV PV+VK R G+ + E+ + ++ AGA + VHGRT Q YR +W Sbjct: 114 DVARAVSC--PVTVKFRRGFGAEEETAVDFGLRMEDAGAAAVTVHGRTAAQMYRGPS-EW 170 Query: 184 QAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY---- 239 + + ++ L++PVI NG+I SA + +GCD VMI RGA P + V+ Sbjct: 171 ECVARVKAALSVPVIGNGDIVSGASAADMVRATGCDGVMIARGAQGNPWIFADVRRVLDG 230 Query: 240 --NEPRMPWPEVVALLQKYTRLE--KQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVR 295 P + V + +++ L + G+T +Y +++ + + A+ + Sbjct: 231 MPPAPDPTRQDRVEMARRHIHLLSSRLGNTVVY----MRKHVMWYLHGVPGASRARAALN 286 Query: 296 VLNNSPDIARAIQAI 310 D R + + Sbjct: 287 ACVTVDDFDRVLDEL 301 >UniRef50_A6BZR9 Predicted TIM-barrel enzyme, possibly dehydrogenase, nifR3 family protein n=1 Tax=Planctomyces maris DSM 8797 RepID=A6BZR9_9PLAN Length = 355 Score = 267 bits (684), Expect = 3e-70, Method: Composition-based stats. Identities = 89/316 (28%), Positives = 145/316 (45%), Gaps = 17/316 (5%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 R LAP+ G R + E+ LC T+ V L + + + +P+ Sbjct: 24 RYFLAPLAGYTQHAFRVAIRELGGVGLCTTDLVLASHLLSGSRKSKALL------TTSPA 77 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + +Q+ G L A + G VDLN GCP +NG+GGGA ++ P+ Q Sbjct: 78 DRPLTIQIFGGITAELVAAARWLEQHGYAAVDLNMGCPMAKINGNGGGARIMCAPDAACQ 137 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKKFE-IADAVQQAGATELVVHGRTKEQGYRAEH 180 + +AV +PV+VK+RLGWD +A +QAG + VHGRT+ QG+ Sbjct: 138 LVAEVVDAVS--IPVTVKMRLGWDRDSITAPLLAREFEQAGVAAITVHGRTRNQGF-GGT 194 Query: 181 IDWQAIGDIRQRL-NIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK- 238 +D Q I + + IPVI NG++ + A + +GC+AV IGRGA+ P + R + Sbjct: 195 VDLQGIRQTVEAVQQIPVIGNGDVCTVEDAFRMREQTGCEAVSIGRGAMLDPWIFRKISQ 254 Query: 239 --YNEP--RMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHV 294 +EP E + L+++ L + LY I+++ ++ +L + Sbjct: 255 AVRDEPVTEPTRDEQIQFLERHFSLMFE-QHELYGCRLIRKFAAWYGARLGIPEDLEDRL 313 Query: 295 RVLNNSPDIARAIQAI 310 R L + + I+ I Sbjct: 314 RRLESDEEFKDIIEQI 329 >UniRef50_A6DCX2 tRNA-dihydrouridine synthase B n=1 Tax=Caminibacter mediatlanticus TB-2 RepID=A6DCX2_9PROT Length = 311 Score = 267 bits (684), Expect = 3e-70, Method: Composition-based stats. Identities = 73/310 (23%), Positives = 135/310 (43%), Gaps = 16/310 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 LAP+ G D R ++ E D+ +E + + ++ ++ Sbjct: 13 FFLAPLAGYTDLPFRSVVKEFG-CDMTFSEMINANAIAFNNEKTKKMM------QKSSKE 65 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGS-WGVDLNCGCPSKTVNGSGGGATLLKD--PELI 119 T +Q+ + + E+ G+D+N GCP SG G LLKD E + Sbjct: 66 TPYFIQIAANNVENAIKAVEIINEIPWIDGIDINLGCPVNKARRSGYGGVLLKDENKEKL 125 Query: 120 YQGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAE 179 + A+ + + VS K+RLG++ + A ++ G L VHGRT +Q Y+ Sbjct: 126 KEIVSAIIKT--SKKIVSAKMRLGYNEV-VAVDRAKMLEDLGIKFLTVHGRTVKQMYKG- 181 Query: 180 HIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY 239 + +++ I + + +NIPVIANG+I D++ A++ + + + V IGRG + P + +K Sbjct: 182 NANYKEIKKVVKEVNIPVIANGDITDYKKAKEVLEYTEANGVAIGRGVIGKPWIFLEMKQ 241 Query: 240 NEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNN 299 P+ + +L + + + G Y V ++ L K A+E + N Sbjct: 242 QGEITPYQKKEVILTHFKAMIEWY--GDYGVILFRKHLHQYSKGIKNASEFRSKINSTEN 299 Query: 300 SPDIARAIQA 309 ++ I+ Sbjct: 300 KDEVINLIEE 309 >UniRef50_A5FL15 tRNA-dihydrouridine synthase B-like protein n=14 Tax=Bacteroidetes RepID=A5FL15_FLAJ1 Length = 332 Score = 267 bits (683), Expect = 3e-70, Method: Composition-based stats. Identities = 81/318 (25%), Positives = 142/318 (44%), Gaps = 19/318 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 +LLAPME V D R L + + D+ +EF+ L+ + R+ ++ + Sbjct: 16 LLLAPMEDVSDPPFRRLC-KTHGADMMYSEFISSEG-LIRDAIKSRMKLDIFDY-----E 68 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 V +Q+ G + + ++ + VD+N GCP K V G GA +LKD +L+ + Sbjct: 69 RPVGIQIFGGDEEAMEMSSKIVSTVKPDLVDINFGCPVKKVVCRGAGAGVLKDVDLMVRL 128 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGEKKF-EIADAVQQAGATELVVHGRTKEQGYRAEHI 181 KA+ + LPV+VK RLGWD E+A+ +Q G L +H RT+ Q Y+ H Sbjct: 129 TKAVIK--GTDLPVTVKTRLGWDESSINIDEVAERLQDIGVQALTIHARTRAQMYKG-HS 185 Query: 182 DWQAIGDIRQRLNI--PVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY 239 DW I ++ I P+ NG+I + A Q G D +MIGR A+ P + +K+ Sbjct: 186 DWSHIARVKNNPRITMPIFGNGDIDSPEKALQYKNEYGIDGIMIGRAAIGYPWIFNEIKH 245 Query: 240 ------NEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQH 293 + P + V + + + + + +++ + K E Q Sbjct: 246 YFKTGEHLPAPTVIDRVEAARNHLKWSMEWKGERLGIVEMRRHYTNYFKGIHSFKEFKQK 305 Query: 294 VRVLNNSPDIARAIQAID 311 + + ++ ++ I+ Sbjct: 306 LVTTDEPENLFAIMKEIE 323 >UniRef50_C9LMP9 tRNA-dihydrouridine synthase n=1 Tax=Dialister invisus DSM 15470 RepID=C9LMP9_9FIRM Length = 330 Score = 267 bits (682), Expect = 5e-70, Method: Composition-based stats. Identities = 89/317 (28%), Positives = 135/317 (42%), Gaps = 17/317 (5%) Query: 4 LLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGT 63 LLAPM GV D R + ++ L E V + + Sbjct: 16 LLAPMAGVSDLAYRVIARKMGAA-LTTAEMVSAKGLYYHNEKTKDML------KIAEEEH 68 Query: 64 LVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGA 123 V +QL G P +A A + G+ VD+N GCP + V +G G+ L+K+ L + Sbjct: 69 PVSLQLFGSDPAVMALGAKVMEKAGADIVDINMGCPMQKVVKNGDGSALMKNVTLAAEII 128 Query: 124 KAMREAVPAHLPVSVKVRLGW-DSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHID 182 A+ AV +PV++K+RLGW E+A A + AGA + VHGRT+E Y D Sbjct: 129 SAVTAAV--KIPVTIKMRLGWSRDTINAVELAMAAESAGAAAITVHGRTREDFYMGT-AD 185 Query: 183 WQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK---- 238 W+ I + + IPVI NG++ D +A+ M +GC AV IGR A P + V Sbjct: 186 WREIKKVVDAVRIPVIGNGDVGDGPAAKALMEETGCAAVAIGRAAWGNPWVFGAVNTYLE 245 Query: 239 --YNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRV 296 P W E +A+ +K+ V ++ S +AT L + + Sbjct: 246 TGEILPGPSWEERLAMARKHLHGLCVEKGERIAVREMRAHASRYFHGLPKATVLRREIMK 305 Query: 297 LNNSPDIARAIQAIDIE 313 + R + + E Sbjct: 306 ALTEEEFGRILTGYEKE 322 >UniRef50_C5WE57 tRNA-dihydrouridine synthase n=42 Tax=Streptococcus RepID=C5WE57_STRDG Length = 354 Score = 267 bits (682), Expect = 5e-70, Method: Composition-based stats. Identities = 78/317 (24%), Positives = 131/317 (41%), Gaps = 18/317 (5%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 R +LAPM GV +S R + E L + E + L + L + Sbjct: 47 RTVLAPMAGVTNSAFRTIAKEFG-AGLVVMEMISEKGLLYNNEKT------LHMLHIDEN 99 Query: 62 GTLVRVQLLGQFPQWLAENAARAV-ELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 + +QL G + L A + VD+N GCP V + GA L+DP+ IY Sbjct: 100 EHPMSIQLFGGDAEGLKRAADFIQTNTKADIVDINMGCPVNKVVKNEAGAKWLRDPDKIY 159 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 K + + +P++VK+R GW E A A + AG + L +HGRT+EQ Y Sbjct: 160 HIVKEVTSVL--DIPLTVKMRTGWADSSLAVENALAAESAGVSALAMHGRTREQMYTGT- 216 Query: 181 IDWQAIGDI-RQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY 239 D + + + + IP I NG++ Q A+ + G DAVMIGR A+N P L + + Sbjct: 217 CDHETLARVSKAITKIPFIGNGDVRSVQDAKFMIEEIGVDAVMIGRAAMNNPYLFTQINH 276 Query: 240 ------NEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQH 293 P +P+ + + + + + + V + + + A ++ Sbjct: 277 FFETGQELPDLPFAKKLDIAKDHLKRLINLKGETIAVREFRGLAPHYLRGTAGAAKVRGA 336 Query: 294 VRVLNNSPDIARAIQAI 310 V ++ + + Sbjct: 337 VSRAETLAEVEAIFETV 353 >UniRef50_UPI00016C52C4 dihydrouridine synthase DuS n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C52C4 Length = 326 Score = 266 bits (681), Expect = 6e-70, Method: Composition-based stats. Identities = 112/307 (36%), Positives = 166/307 (54%), Gaps = 22/307 (7%) Query: 16 VRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGTLVRVQLLGQFPQ 75 +R + + +TEF+RV + P VFH PEL+ + T +G V+VQLLG Sbjct: 1 MRAVQGATGAFTYAVTEFLRVSHAVPPRHVFHDHVPELRTGAATLTGLPVQVQLLGGDSG 60 Query: 76 WLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLP 135 +AE+A RA ELG+ VD+N GCP+ TVN GGA LL+ P I + A+R A+P H+P Sbjct: 61 RMAESAVRAHELGATAVDVNFGCPAPTVNRHDGGAALLRHPLRIREIVGAIRAALPPHVP 120 Query: 136 VSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHIDWQAIGDIRQRLNI 195 VS K+RLGWD+ + E A + GA + +HGRT+ GY A I W+ IG +R+RL I Sbjct: 121 VSAKLRLGWDTLDAIHENATMAAEGGAAWITIHGRTRVAGY-APPIHWEPIGRVRERLGI 179 Query: 196 PVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNEPRMPWPE------- 248 PV+ANG+IW + ++C ++GC M+GRGAL P L+R V +P E Sbjct: 180 PVVANGDIWTVEDFKRCRDVTGCKHFMLGRGALADPRLARRVAAELGLVPPVEETDEPFD 239 Query: 249 -------VVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNNSP 301 +V ++ L + V+R+KQWL L ++ F V+ + + Sbjct: 240 WAAQLRNLVEWSHRFDMLRSDKN-----VSRLKQWL-RLASQFGSFAH-FDRVKRIESVS 292 Query: 302 DIARAIQ 308 + A++ Sbjct: 293 GLFAALE 299 >UniRef50_C6C170 Dihydrouridine synthase DuS n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6C170_DESAD Length = 323 Score = 266 bits (681), Expect = 6e-70, Method: Composition-based stats. Identities = 79/315 (25%), Positives = 139/315 (44%), Gaps = 15/315 (4%) Query: 4 LLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGT 63 LAP+ G D R L + + TE V V K + + P Sbjct: 12 WLAPLAGYSDLPFRMLCRKRG-CAVACTEMVSVKGLKYDGKGTKALL------ATCPEDN 64 Query: 64 LVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGA 123 + VQL G PQ ++ + ++ G DLN GCP K V +GGG+ L DP+ + + A Sbjct: 65 PLVVQLFGGEPQDYSDTMPQLIDEGYSFFDLNSGCPVKKVLKTGGGSALHLDPDRLVETA 124 Query: 124 KAMREAVPAHLPVSVKVRLGWDSGEKKF-EIADAVQQAGATELVVHGRTKEQGYRAEHID 182 AM V VK+RLG+ +GE F EIA ++ G L +H R +Q + + D Sbjct: 125 SAMVRVAGEGK-VGVKIRLGFMNGEDNFLEIAKRLEDTGVAWLTMHPRYAKQMFSGQ-AD 182 Query: 183 WQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY--N 240 W + ++Q ++IPVI +G+++ + +C+ +G D +M RGAL P + + Sbjct: 183 WSKLAVLKQNVSIPVIGSGDLFTAEDGMECIKQTGIDGIMFARGALFDPEIFARYLKLLD 242 Query: 241 EPRM---PWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVL 297 +P+ P ++ ++++ + + D +I+ L K D + + Sbjct: 243 DPKCATLPPFDLGKTMEEHINMTRDFDGSNRSFRKIRSILPRYAKGMDGIRSIRTKLTAC 302 Query: 298 NNSPDIARAIQAIDI 312 + ++ A + + Sbjct: 303 EDWEELLEAAREVST 317 >UniRef50_Q14SX5 Putative dihydrouridine synthase n=6 Tax=Clostridiales RepID=Q14SX5_RUMFL Length = 332 Score = 266 bits (680), Expect = 7e-70, Method: Composition-based stats. Identities = 81/299 (27%), Positives = 135/299 (45%), Gaps = 21/299 (7%) Query: 5 LAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGTL 64 LAPM GV D R + ++E V + +C + T Sbjct: 18 LAPMAGVADRAYRLMCKRYGAA-YVVSEMVSAKGICYSDRKTAELC------TVTEEERP 70 Query: 65 VRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAK 124 + VQL G P ++AE ++ +D+N GCP V G+G G+ L+KDP L + Sbjct: 71 MAVQLFGSEPDFMAEAVKIVLDYRPDIIDINMGCPVPKVVGTGAGSALMKDPALAAAITE 130 Query: 125 AMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRAEHIDW 183 A +A PV+VK+R GW S E+A A++ +G + VHGRT++ Y + D Sbjct: 131 AAVKAA-GDTPVTVKIRSGWSSDSINAPEMARALEASGTAAIAVHGRTRDMFYSGQS-DM 188 Query: 184 QAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNEP- 242 I +++ +++PVI NG+I D +S + +GCD VMIGRG+ P + R + Sbjct: 189 NVIKAVKEAVSVPVIGNGDITDAESCAEMYGRTGCDLVMIGRGSYGNPFIFREIAARMEG 248 Query: 243 ----RMPWPEVVALLQKYTR----LEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQH 293 E + ++ ++ R L ++ + H AR + ++ Y + + Sbjct: 249 SEYQPPSLEEKMRVMLEHIRLIAGLSEKCEELAMHEAR--KHAAWYMNGYYGSAKFRGR 305 >UniRef50_B9L781 tRNA-dihydrouridine synthase B n=1 Tax=Nautilia profundicola AmH RepID=B9L781_NAUPA Length = 313 Score = 266 bits (680), Expect = 8e-70, Method: Composition-based stats. Identities = 73/310 (23%), Positives = 130/310 (41%), Gaps = 16/310 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 LAP+ G D R ++ + D+ +E V + ++ ++P Sbjct: 13 FFLAPLAGYTDLPFRSVVKKFG-CDMTFSEMTNVNAIAYQNEKTQKMM------EKSPLE 65 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGS-WGVDLNCGCPSKTVNGSGGGATLLKD--PELI 119 VQ+ + + EL G+D+N GCP SG G LLKD + + Sbjct: 66 NPYFVQIAANNVENAVKAVEIINELNWIDGIDINLGCPVNKARRSGFGGVLLKDENRDFL 125 Query: 120 YQGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAE 179 + + + + PVS K+R+G+D + A ++ G L +HGRT +Q Y+ E Sbjct: 126 KEVVGTIVKT--SKKPVSAKMRIGFD-KSVVEDRAKLLEDLGIVFLTIHGRTVKQMYKGE 182 Query: 180 HIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY 239 D+ I + IPVIANG+I D++ A+ + +G V IGRGA+ P + +K Sbjct: 183 -ADYDEIKKGVNAVKIPVIANGDITDYEKAKYVLEYTGASGVSIGRGAVGKPWIFLEMKQ 241 Query: 240 NEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNN 299 + +L+ + ++ G Y V ++ K +A+E + + + Sbjct: 242 QGNITSEQKKEVILEHFNQMVYWY--GEYGVILFRKHAHAYSKGIPKASEFRSKMNEVKD 299 Query: 300 SPDIARAIQA 309 + I+ Sbjct: 300 PEVARKLIEE 309 >UniRef50_B9XLX7 Dihydrouridine synthase DuS n=3 Tax=Verrucomicrobia RepID=B9XLX7_9BACT Length = 340 Score = 265 bits (678), Expect = 1e-69, Method: Composition-based stats. Identities = 78/312 (25%), Positives = 145/312 (46%), Gaps = 15/312 (4%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 + LAPM+ V D ++++ D+ TE+ RV K L++ ++ P+G Sbjct: 9 LALAPMQDVTDLPFMKVISSYGSADVYYTEYFRVHGSSNLEKWI------LESITKNPTG 62 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 V Q++G L +A + VDLN GCP+ V G LL++P+ + Sbjct: 63 QPVIAQMIGNDIPSLVRSAKELQQYPIVAVDLNLGCPAPIVYRKCAGGGLLREPKRVDSI 122 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHID 182 A+R+A+ +VK R+G+DS E+ + L VHGRT ++ YR+E + Sbjct: 123 LGALRDAISVKF--TVKTRIGFDSTGVFDELLPIFAKHSIDLLTVHGRTVQEMYRSE-VH 179 Query: 183 WQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNEP 242 + I Q ++ PV+ANG ++ + A++ + +G +MIGRG + P L ++++ Sbjct: 180 YDFIARAAQAVSCPVLANGNVYSAKKAEEVLQFTGARGLMIGRGVIRNPWLFHQIRHHRR 239 Query: 243 RMP--WPEVVALLQK----YTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRV 296 P P+ +LQ Y + L V ++K++L+Y+ + + +R Sbjct: 240 GEPIFIPKGHDVLQYIRTLYDAVRPPDIRELAQVQKMKKYLNYVGLGVEPTGQFLHQIRR 299 Query: 297 LNNSPDIARAIQ 308 + + + + Sbjct: 300 ATSEVEFFKICE 311 >UniRef50_Q2IG49 Dihydrouridine synthase TIM-barrel protein nifR3 n=4 Tax=Anaeromyxobacter RepID=Q2IG49_ANADE Length = 352 Score = 265 bits (678), Expect = 1e-69, Method: Composition-based stats. Identities = 90/326 (27%), Positives = 148/326 (45%), Gaps = 28/326 (8%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 R LAP+ GV D R + + TE V + H R P Sbjct: 11 RYFLAPLAGVSDRPFRAICRRMG-ASFAYTEMVSAHGLM------HGALQTSSYLDREPD 63 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 VQ+ P LA A AV+ G+ +D+N CP K V GSG GA + +DP + + Sbjct: 64 EDPFAVQIFASEPDVLARGAVVAVQAGAGMIDVNMACPVKKVCGSGAGAAMGRDPRKVEE 123 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKK-FEIADAVQQAGATELVVHGRTKEQGYRAEH 180 +A+R AVP +PV+VK+R GWD GE ++A A + GA + +HGRT+ Q Y + Sbjct: 124 AVRAIRAAVP--VPVTVKIRAGWDEGEVNCVDVARAAEAGGAAAVALHGRTRSQLYSGK- 180 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 W+ + ++Q + IPV+ +G++W A + +GCDAV++ RGA P + R +K Sbjct: 181 ARWELVRAVKQAVAIPVLGSGDVWTAGDAVRMREETGCDAVLVARGACGNPWIFRELKAI 240 Query: 241 EPRMPW------PEVVALLQKYTRLEKQG-----------DTGLYHVARIKQWLSYLRKE 283 E P E V + ++ RL+ + + + + +++ L + + Sbjct: 241 EAGRPPPPPPGRDEWVGTVLEHVRLQVEHRARMAPGEPAEASERHAIRELRKHLLWYTRG 300 Query: 284 YDEATELFQHVRVLNNSPDIARAIQA 309 + L + D+A ++ Sbjct: 301 RRGGVHFRRDAAALVTAADVATLLER 326 >UniRef50_C7LQM9 Dihydrouridine synthase DuS n=2 Tax=Desulfovibrionales RepID=C7LQM9_DESBD Length = 324 Score = 265 bits (678), Expect = 2e-69, Method: Composition-based stats. Identities = 79/311 (25%), Positives = 147/311 (47%), Gaps = 15/311 (4%) Query: 4 LLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGT 63 LAP+ G D R L E +TE V + + + + Sbjct: 14 WLAPLAGFSDLPFRLLCHEYG-CHAAVTEMVSAKGLIYDSPGTNELL------QTCDQDS 66 Query: 64 LVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGA 123 + VQL G +L ++ R + G DLNCGCP + V +G GA LLK+PE + + A Sbjct: 67 PLVVQLFGSEEPFLVQSIERLRKAGFRYFDLNCGCPVRKVIKTGSGAALLKEPENLLKIA 126 Query: 124 KAMREAVPAHLPVSVKVRLGWDSGEK-KFEIADAVQQAGATELVVHGRTKEQGYRAEHID 182 K+M +A + K+RLGW G+ ++A +++ GA + +H R QG+ H D Sbjct: 127 KSMIDAAEPG-CMGFKIRLGWYVGQPVYLQVATKLEELGAGWVTMHPRFGAQGFTG-HAD 184 Query: 183 WQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSR---VVKY 239 W + +++R+ +PVIA+G+++ + A +C+ + D++M RGALN P++ ++ Sbjct: 185 WSHLKTLKERVTLPVIASGDLFHAEDAIKCIEQTSVDSIMFARGALNDPSIFTRYLQLRR 244 Query: 240 NE--PRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVL 297 +E P W ++ ++++ + L Q + +++ + K A L + + Sbjct: 245 HEEPPAKSWQQMEDMVRRLSELYPQHGMDRLGLLKMRTLVPRFLKGLPGARALRRDIVFC 304 Query: 298 NNSPDIARAIQ 308 + ++ +Q Sbjct: 305 KSWDEVFAILQ 315 >UniRef50_P41504 Probable tRNA-dihydrouridine synthase n=93 Tax=Alphaproteobacteria RepID=DUS_RHILP Length = 317 Score = 265 bits (677), Expect = 2e-69, Method: Composition-based stats. Identities = 91/318 (28%), Positives = 148/318 (46%), Gaps = 16/318 (5%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 RV+LAPM GV D REL L +TE V + + E + + Sbjct: 6 RVVLAPMSGVTDMPFRELAWRFG-AGLVVTEMVASRELVNDTA-------ESWSRLKAAG 57 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 VQL G+ W+AE A A + G+ +D+N GCP+K V G G+ L++DP+ Sbjct: 58 FRPHMVQLAGREAHWMAEAAKIAADHGADIIDINMGCPAKKVIGGYSGSALMRDPDHALG 117 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 +A +AV +PV++K+RLGWD +IA + +G + +HGRT+ Q Y Sbjct: 118 LIEATVKAV--DIPVTLKMRLGWDENSINAPDIARRAEASGIQLVTIHGRTRMQFYEGR- 174 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 DW AI +R+ +++P+IANG++ AQ+ + SG DAVMIGRG P V Sbjct: 175 ADWDAIRAVREVISVPLIANGDVETAHDAQEILRRSGADAVMIGRGCQGRPW-HAGVLAG 233 Query: 241 EPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQH--VRVLN 298 ++ + ++ R+ + ++ L + + + A + + Sbjct: 234 AAEPRREDIADIAVEHYRMMLDFYGEAVAIRHARKHLGWYLERFAPALAGTEKAGIMTSR 293 Query: 299 NSPDI-ARAIQAIDIEKL 315 + ++ AR A+D L Sbjct: 294 DPREVAARLYHALDAGAL 311 >UniRef50_C7GZ00 tRNA-dihydrouridine synthase n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7GZ00_9FIRM Length = 336 Score = 265 bits (677), Expect = 2e-69, Method: Composition-based stats. Identities = 83/309 (26%), Positives = 137/309 (44%), Gaps = 29/309 (9%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 L+AP+ G D+ VR + E L +E V + K + + Sbjct: 17 FLMAPLAGFTDNAVRTIALEFG-AGLVYSEMVSAKGLIYEQKNTEELL------DFRGAD 69 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 + +Q+ G P +A G+ VD+N GCP + + SG GA L+K P++IY Sbjct: 70 GFIAIQIFGSDPDAVAHGIQCIENKGNAIVDINMGCPMQKIVKSGSGAALMKRPDIIYDM 129 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 K + PV+ K+R+GWD+ + A A++ AGA+ + VHGRT +Q Y + Sbjct: 130 VKDAVKI--TQKPVTAKIRIGWDNNNINAVDCAKAIESAGASAVAVHGRTAKQKYEGS-V 186 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSR------ 235 + I ++Q ++IPVI NG+I + A + M +GCD VMIGRGA+ P + + Sbjct: 187 NRDVIASVKQSVSIPVIGNGDIKSAKEALEFMDETGCDMVMIGRGAIGKPWIFKSCNMAL 246 Query: 236 ----------VVKYNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYD 285 + EP E++ L+K L + +++ LS K Sbjct: 247 SEIRKGKSIDEITEYEPCAD--EILNTLKKLIDLTVSYKGEKRALLELRKKLSKYLKNTS 304 Query: 286 EATELFQHV 294 + + + Sbjct: 305 GVKDYRKRL 313 >UniRef50_A7S213 Predicted protein n=1 Tax=Nematostella vectensis RepID=A7S213_NEMVE Length = 570 Score = 264 bits (676), Expect = 2e-69, Method: Composition-based stats. Identities = 74/311 (23%), Positives = 136/311 (43%), Gaps = 22/311 (7%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 ++ LAP+ + + R + + D+ E + L + E R S Sbjct: 219 KLYLAPLTTIGNLPFRRICKQYG-ADITCGEMAMCTNLLQGQQS------EWALVKRHSS 271 Query: 62 GTLVRVQLLGQFPQWLAENAARAV-ELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 + VQL G FP + + A E +D+N GCP V G G+ L++ + Sbjct: 272 EDIFGVQLCGAFPDTMTKCAELLQKETDVDFIDINTGCPIDLVFNKGAGSALMERKGKLQ 331 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGE---KKFEIADAVQQAGATELVVHGRTKEQGYR 177 Q + M+ + +P++VK+R G + ++ ++ G + +HGR++EQ Y Sbjct: 332 QIVQGMKSVI--DIPLTVKIRAGIHDKKYTWNAHKLVGNLRDWGTDMVTIHGRSREQRY- 388 Query: 178 AEHIDWQAIGDIRQ-RLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRV 236 + DW I ++ + +PV NG+I ++ A Q +G VMI RGA+ P + Sbjct: 389 TKSADWDYISEVAKLASPMPVFGNGDILSFEDAMQHRKQAGVAGVMIARGAIIKPWIFTE 448 Query: 237 VKYN-EPRMPWPEVVALLQKYTR--LEKQGDT--GLYHVAR-IKQWLSYLRKEYDEATEL 290 +K + E + +L+++ LE G G+ R + +WLS+ + Y L Sbjct: 449 IKEQRHWDISSSERLDILRQFVNAGLEHWGSDTQGVEKTRRFLLEWLSFTCR-YVPVGLL 507 Query: 291 FQHVRVLNNSP 301 + + +N+ P Sbjct: 508 ERLPQRINDRP 518 >UniRef50_C7H613 tRNA-dihydrouridine synthase n=3 Tax=Ruminococcaceae RepID=C7H613_9FIRM Length = 340 Score = 264 bits (676), Expect = 2e-69, Method: Composition-based stats. Identities = 72/248 (29%), Positives = 118/248 (47%), Gaps = 11/248 (4%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 R + PM G D+ R L+ + + ++E V + + P+ Sbjct: 50 RAVFGPMAGFTDAPARRLMAQ-HGAGFTVSEMVSSRALVYGDHKT------VSLLKAEPN 102 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 G VQ+ G+ P+ + + AA + +D+N GCP+ + G G+ L+ DP+ + Sbjct: 103 GAPYGVQIFGEVPEIMGQAAAAVEQYAFDFLDINMGCPAPKIVSGGAGSKLMLDPDRCGR 162 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKK-FEIADAVQQAGATELVVHGRTKEQGYRAEH 180 + + + PV+VK+R GWD+ E A A +QAGA + VH RT+EQ Y Sbjct: 163 IVEEVVKNTS--RPVTVKMRKGWDAEHVTAVECAKACEQAGAVLIAVHARTREQMY-TPG 219 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 ID I ++ +++PV+ NG+I + A + + +GCD VMI R AL P L V Sbjct: 220 IDPSIIAAVKDAVHVPVLGNGDIRTAEDAVRMVEETGCDGVMIARAALGDPWLFERVNAA 279 Query: 241 EPRMPWPE 248 +P P+ Sbjct: 280 LEGLPRPQ 287 >UniRef50_D1AZV6 Dihydrouridine synthase DuS n=7 Tax=Campylobacteraceae RepID=D1AZV6_SULD5 Length = 312 Score = 264 bits (675), Expect = 4e-69, Method: Composition-based stats. Identities = 81/308 (26%), Positives = 151/308 (49%), Gaps = 16/308 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 + LAP+ G D R ++ + D+ +E + + ++ +++P Sbjct: 12 LALAPLAGFTDLPFRSVVKKFG-ADVTFSEMISANALRFKSEKTFKML------TKSPLE 64 Query: 63 TLVRVQLLGQFPQWLAENAARAVEL-GSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 VQ++G + E ++ G G+DLNCGCP + G++LL + + + + Sbjct: 65 IPYIVQIVGSDLTSIKEAVLILNDMEGIAGIDLNCGCPVPKMVAQEAGSSLLLNLDHMQR 124 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 + ++ S KVRLG+++ + IA A + AGA + +HGRT+ Y+AE + Sbjct: 125 VIETIK-TYSNKRYTSAKVRLGFNTKIPEL-IAKACENAGADFMSMHGRTRSGAYKAE-V 181 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNE 241 D+QAI + R + IPVIANG+I + A M+++GC +MIGRGAL P + +K Sbjct: 182 DYQAIAEARAAVKIPVIANGDITSLEKALHVMSVTGCKNLMIGRGALGNPWIFYQLKNGL 241 Query: 242 PRMPWPEVVALLQKY--TRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNN 299 + +++ ++ ++ +E G+ G V+ ++ L K + EA+E + + + Sbjct: 242 HHVEKTKILEIVLEHYDAMVEFYGEKG---VSIFRKHLHTYSKGFREASEFRDKINRIED 298 Query: 300 SPDIARAI 307 + AI Sbjct: 299 KVLMREAI 306 >UniRef50_UPI0000D52F94 Dihydrouridine synthase TIM-barrel protein nifR3 n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=UPI0000D52F94 Length = 338 Score = 262 bits (671), Expect = 9e-69, Method: Composition-based stats. Identities = 83/314 (26%), Positives = 131/314 (41%), Gaps = 27/314 (8%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 + LAPM GV D R L E D +TEF + P Sbjct: 14 IFLAPMAGVTDLAYRLLAKECG-ADFTVTEFTAASGL------TRKNTNSWLKVETDPRE 66 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 Q+ G +A+ + S +D+N GCP+ V + GA LL+DP+ + Sbjct: 67 KPFIPQIFGGDISEMAKTVGMLEDR-SDVIDINFGCPAPKVCRNDAGAALLRDPDKVVSM 125 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGEKK-FEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 + R ++P++VK+RLG SG EI+ + G + VHGRT Q Y Sbjct: 126 VR--RCIESTNVPITVKMRLGTGSGPNTALEISKRLADEGVMRICVHGRTLRQRYSG-IA 182 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN- 240 DW I +I ++IPVIANG++ D +SA+ C+ + +MIGRGA+ P + +K+ Sbjct: 183 DWDQIKEISNSVDIPVIANGDVVDTKSAELCLEATNAGGLMIGRGAIGRPTIFHEIKHGM 242 Query: 241 ---------EPRMPWPEVVALLQKYTRL--EKQGDTGLYHVARIKQWLSYLRKEYDEATE 289 P +Y L E GD+G +K+ K + A+ Sbjct: 243 GWSHKTAPWGKGGPSRARSWCWDRYLELSQEVYGDSGS---KNLKRHAISFTKGLEGASA 299 Query: 290 LFQHVRVLNNSPDI 303 + + + + + Sbjct: 300 MRVRLHSIQDKTQL 313 >UniRef50_C3MBL4 tRNA-dihydrouridine synthase n=1 Tax=Rhizobium sp. NGR234 RepID=C3MBL4_RHISN Length = 342 Score = 262 bits (670), Expect = 1e-68, Method: Composition-based stats. Identities = 81/284 (28%), Positives = 129/284 (45%), Gaps = 12/284 (4%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 RV LAPM GV D R L +TE V + + E + Sbjct: 27 RVALAPMSGVTDLPFRMLAWRFG-AGFVVTEMVASRELVGNAA-------ESWARLKNSG 78 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 VQL G+ W+AE A G+ VD+N GCP+K V G G+ L++DP+ Sbjct: 79 IDPHIVQLAGREAHWMAEAAKIVEANGADIVDINMGCPAKKVTGGYSGSALMRDPDHALS 138 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKKFE-IADAVQQAGATELVVHGRTKEQGYRAEH 180 +A +AV +PV++K+RLGWD IA ++AG + +HGRT+ Q Y + Sbjct: 139 LIEATVKAV--RVPVTLKMRLGWDENSINAPLIARRAEEAGVQAITIHGRTRMQFYNG-N 195 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 DW AI +R ++IP+IANG++ A + + SG DAVM+GR P + + Sbjct: 196 ADWDAIRAVRDVISIPLIANGDVDTIADAMEILRRSGADAVMLGRSCQGRPWHAGALAGA 255 Query: 241 EPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEY 284 E+ A+ ++ + + ++ + + + + Sbjct: 256 ADEPAATEIAAIFVEHYAMMLDFYGPEIGLRHARKHVGWYLERF 299 >UniRef50_B6YQB2 tRNA-dihydrouridine synthase n=36 Tax=Bacteria RepID=B6YQB2_AZOPC Length = 340 Score = 261 bits (668), Expect = 2e-68, Method: Composition-based stats. Identities = 87/316 (27%), Positives = 141/316 (44%), Gaps = 17/316 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 V LAPMEGV + R L D+ TEF+ + V + S Sbjct: 20 VFLAPMEGVTNVYFRSLCKSFG-ADMVYTEFISADALIRHVDKIQGKLKII------NSE 72 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 + VQ+ GQ + E A E+ +DLN GCP K + GA +L+ P+ + + Sbjct: 73 HPIAVQIYGQDKDTMVEAARICEEMQPDFLDLNFGCPVKKIVRRNAGAGMLRVPKKMIEI 132 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGEK-KFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 + + +V ++P++VK RLGWD K ++A+ +Q G L +HGRT Q Y + Sbjct: 133 TQQVVHSV--NIPITVKTRLGWDENSKIIVDLAERLQDTGIALLTIHGRTGSQMYSGK-A 189 Query: 182 DWQAIGDIRQRLN--IPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY 239 DW IG ++ IP+ NG+I Q +Q G DAVMIGR ++ P + + VKY Sbjct: 190 DWNLIGAVKNNPRMYIPICGNGDIVSPQQCEQAFNRYGVDAVMIGRASIGAPWIFQEVKY 249 Query: 240 NEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNN 299 + + L++Q + + + L+ + + A+ LF+ + Sbjct: 250 YLKYNDLAPKKSFEYYLSVLKQQILQSVSQLGERQGILN--SRRHIVASPLFKKMSNFKL 307 Query: 300 SPDIARAIQAIDIEKL 315 + +QAI + L Sbjct: 308 TK--IAMLQAITVSSL 321 >UniRef50_C6XJQ7 Dihydrouridine synthase DuS n=2 Tax=Hyphomonadaceae RepID=C6XJQ7_HIRBI Length = 337 Score = 261 bits (667), Expect = 3e-68, Method: Composition-based stats. Identities = 90/325 (27%), Positives = 153/325 (47%), Gaps = 23/325 (7%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 V LAPM G D+ R + + ITE + + + + ++ + Sbjct: 13 VFLAPMSGATDAPFRRQASRFGAP-VVITEMIAGSELATGRQDM------VWRITKPENT 65 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 VQL G+ P+W+ E A + G+ +D+N GCPS+ V G GA L++D +L + Sbjct: 66 FPFVVQLAGRDPKWMYEAARISASAGADIIDINMGCPSRQVTGGQSGAALMRDLDLAREL 125 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 A RE LPVSVK+RLGWD +A ++ + VHGRT+ Q Y + Sbjct: 126 IIAARE--GGGLPVSVKMRLGWDDDTLNAPALAKICEEEHVKLITVHGRTRCQFYTGK-A 182 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNE 241 DW + +++ N+P+I NG+I ++A+Q + +S D VMIGR AL P L + + Sbjct: 183 DWNKVKEVKLASNLPLIVNGDIDSSKTAKQAILLSQADGVMIGRAALGRPWLLGKIASDL 242 Query: 242 PRMPWPEVVALLQKYTRLEKQGDTGLYHVARI-----KQWLS-------YLRKEYDEATE 289 P+ E + + E+ D+ L + R+ ++ L+ +R ++ E Sbjct: 243 ANRPYIEPTWSEKLSSLCEQVSDSVLLYGDRLGVRVFRKHLAAFIDYSKEIRLNTEDRNE 302 Query: 290 LFQHVRVLNNSPDIARAIQAIDIEK 314 L +++ D+ AI +++ K Sbjct: 303 LRGRFCRISSENDVISAITSLEAPK 327 >UniRef50_A0Z0J5 TRNA-dihydrouridine synthase B n=2 Tax=unclassified Gammaproteobacteria (miscellaneous) RepID=A0Z0J5_9GAMM Length = 352 Score = 261 bits (667), Expect = 3e-68, Method: Composition-based stats. Identities = 84/321 (26%), Positives = 139/321 (43%), Gaps = 21/321 (6%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 V LAPM GV D +REL E+ + + E + +LL + + G Sbjct: 26 VALAPMAGVTDLPMRELCVELG-AGMAVAEMLTSDPKLLASRKSS------LRRRHSAKG 78 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 L VQ++G PQ LA A + G+ +D+N GCP+K V G+ LL D + + + Sbjct: 79 GLRSVQIVGSEPQQLANAARLNADDGADVIDINMGCPAKKVCKKAAGSALLADEDRVAEI 138 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGEKK-FEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 KA+ AV +PV++K+R G ++ IA + AG L VHGRT+ ++ E Sbjct: 139 LKAVVSAV--DVPVTLKIRTGVSPQQRNGVAIAKIAEDAGIQLLTVHGRTRADRFKGE-A 195 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY-- 239 ++ I I ++IPV+ANG+I A + +G +MIGR AL P L + Sbjct: 196 EYHTIERIVDAVSIPVLANGDITTPAQALAVLQKTGAAGIMIGRAALGRPWLPGAIAQSL 255 Query: 240 ---NEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDE-----ATELF 291 P E ++ + V ++ + + + TE Sbjct: 256 AGLRTPLPSLAERFLQMRCHLTALHDFHGDFMGVRIARKHVGWFIDAIENDVASSFTEWK 315 Query: 292 QHVRVLNNSPDIARAIQAIDI 312 +H L ++ +Q +++ Sbjct: 316 RHFNALQDADAQQTLLQTLEL 336 >UniRef50_Q5FMA1 Transcriptional regulator n=14 Tax=Firmicutes RepID=Q5FMA1_LACAC Length = 342 Score = 260 bits (666), Expect = 4e-68, Method: Composition-based stats. Identities = 84/314 (26%), Positives = 137/314 (43%), Gaps = 18/314 (5%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 RV++APM GV +S R + E L + E + + K L P Sbjct: 16 RVVVAPMAGVSNSAFRVVCKEFG-AGLVVCEMISDHGIIYRNKKT------LSMMDVDPR 68 Query: 62 GTLVRVQLLGQFPQWLAENAA-RAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 + +Q+ G + L + A + +D+N GCP V + G+ L D IY Sbjct: 69 EHPMSIQIFGGTEETLLQAAQYIDQNTDADIIDINMGCPVPKVTKTDAGSKWLLDSNKIY 128 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEK-KFEIADAVQQAGATELVVHGRTKEQGYRAE 179 Q A+ + V PVSVK+R+GWD E A A Q+AGA+ + +HGRT++Q Y+ E Sbjct: 129 QMVHAVVQNV--QKPVSVKMRIGWDRKHVFAVENALAAQEAGASMIAMHGRTRKQMYQGE 186 Query: 180 HIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSR---- 235 DW+ + D+ Q L++P +ANG+I + A++ + GC AVM+GR AL P + + Sbjct: 187 -ADWEVLHDVAQVLDVPFVANGDIATPELAKKALDDIGCTAVMVGRAALGNPWILKDMVH 245 Query: 236 --VVKYNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQH 293 P E V + + + V +Q +Y K + Sbjct: 246 YLETGETLPPQTVREKVETAKHQLQGLIEIHGEKRAVPEFRQQAAYYLKGIPRSARTRAK 305 Query: 294 VRVLNNSPDIARAI 307 + + ++ + Sbjct: 306 INEVWTRQEVYDLL 319 >UniRef50_A9BIR6 Dihydrouridine synthase DuS n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BIR6_PETMO Length = 301 Score = 260 bits (665), Expect = 4e-68, Method: Composition-based stats. Identities = 77/307 (25%), Positives = 143/307 (46%), Gaps = 17/307 (5%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 ++ LAPM D RE+ TE + V + + ++ P+ Sbjct: 5 QIGLAPMADYTDYPFREICRRFG-AKFTFTEMISVDSIIRENEKVEKMLPQ-------KG 56 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + VQL G E A L + +D+N CP V G GA LLK+P+L+ Sbjct: 57 EDNIGVQLFGNETTKFIEAAKSIQHL-ASWIDINAACPVNKVVKKGSGAALLKNPKLLGD 115 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 +++++ LPV VKVRLG+D E+A+ V++AGA ++VHGRT+ Q Y Sbjct: 116 IVFNLKKSI--DLPVGVKVRLGYD-QINIEEVAETVEKAGADYIIVHGRTRSQMYSG-IA 171 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNE 241 + + + ++ ++ IP+ A+G+++ + + G D V++ RGA+ P + YN Sbjct: 172 NREILKKLKAKITIPLGASGDVFSKKDIDDYLLNYGADFVLVARGAIGNPWIFTKNNYN- 230 Query: 242 PRMPWPEVVALLQKYTRLE-KQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNNS 300 E + ++ +L + + +Y V + ++ L + A E+ +++ +L + Sbjct: 231 --PTIDERIDTCLEHLKLMIEFYGSEVYAVKKFRKVLMKYFSGIEGAKEIRRNLDLLLSY 288 Query: 301 PDIARAI 307 D+A + Sbjct: 289 NDVAEMV 295 >UniRef50_B9ZKT6 TIM-barrel protein, nifR3 family n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZKT6_9GAMM Length = 330 Score = 260 bits (664), Expect = 6e-68, Method: Composition-based stats. Identities = 94/290 (32%), Positives = 142/290 (48%), Gaps = 19/290 (6%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPV-KVFHRICPELQNASRTPS 61 V LAPM GV D +R + + ++E V +L K HR+ Sbjct: 13 VFLAPMAGVSDRPLRLIARRLG-ASAAVSEMVTSDTRLWGSDKSRHRL-------DHRQE 64 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 VQLLG P+ LAE A V G+ +DLN GCP+K V G+ LL +PE + + Sbjct: 65 PRPRIVQLLGNEPEPLAEAARENVRRGADVIDLNLGCPAKKVCSKAAGSALLGEPERVRE 124 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKKFE-IADAVQQAGATELVVHGRTKEQGYRAEH 180 A+ E+V +PV++K+RLG D E IA Q G L VHGRT+ YR Sbjct: 125 LLTALVESV--EVPVTLKMRLGLDRERVNAETIAGIAQDCGIAMLTVHGRTRADAYRGT- 181 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 D++AI + + ++IPV+ANG++ D SA++ +AISG +MIGRGA P L ++ + Sbjct: 182 ADYEAIARVVRAVSIPVLANGDVVDIGSARRALAISGATGLMIGRGAQGRPWLPGQIRAS 241 Query: 241 EPRMP------WPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEY 284 P W +AL++++ R + V ++ L + + Sbjct: 242 LAGEPVPADPAWDARLALIEEHLRALHAQYGEMQGVRIARKHLGWYLQHM 291 >UniRef50_Q30WR3 Dihydrouridine synthase family protein n=3 Tax=Deltaproteobacteria RepID=Q30WR3_DESDG Length = 376 Score = 259 bits (663), Expect = 8e-68, Method: Composition-based stats. Identities = 86/309 (27%), Positives = 126/309 (40%), Gaps = 10/309 (3%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 R+ LAPM G+ R++L L T + +P + R P+ Sbjct: 58 RLFLAPMAGLGHIAYRQVLESFGGCGLVFTGMCSA--RAVPTENPARSPVFSWRPEELPA 115 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + QL G PQ +A A R G +GVD+N GC + G GA LL+DPE + Sbjct: 116 ---LVCQLFGADPQDMAAAARRVESEGFFGVDINMGCSVAPIVKKGCGADLLRDPERAVR 172 Query: 122 GAKAMREAVPAHLPVSVKVRLGWD-SGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 A+R AV +PV VK+R GW E +A +Q AGA LV H R R Sbjct: 173 MVDAVRRAVS--VPVFVKMRTGWSPDPEPAVNLARRLQDAGADALVFHPRVAPDR-RTHR 229 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 IG ++ ++IPVI NG+++D + +GCD V +GR A+ P + Sbjct: 230 PRTAHIGLVKDAVDIPVIGNGDVFDAADCAAMLERTGCDGVSLGRLAIARPWIFAQWTRG 289 Query: 241 EPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNNS 300 L LE D + K+ + Y + LF + ++ Sbjct: 290 FVPEKQTYRDTLFALMDALEAHYDPA-RAIKLYKKLIMYYAANFTFGNRLFGRLIRGDDM 348 Query: 301 PDIARAIQA 309 + R QA Sbjct: 349 QAMRRNAQA 357 >UniRef50_Q6A959 TIM-barrel enzyme, NifR3 family n=2 Tax=Propionibacterium acnes RepID=Q6A959_PROAC Length = 411 Score = 259 bits (663), Expect = 8e-68, Method: Composition-based stats. Identities = 84/320 (26%), Positives = 145/320 (45%), Gaps = 18/320 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 V+LAPM GV ++ R+L E L + E + + H + + Sbjct: 52 VVLAPMAGVTNAAFRQLCAEQG-AGLYVCEMITSRGLVYGDHKTHGML------AFAECE 104 Query: 63 TLVRVQLLGQFPQWLAENAARAVE-LGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + VQL G P + E + E G VDLN GCP V GGG L + Sbjct: 105 DVRSVQLYGVDPGMVGEATSILCEKYGVNHVDLNFGCPVPKVTRKGGGGVLPWKLDRFAA 164 Query: 122 GAKAMREAVPAH-LPVSVKVRLGWDSGEKKF-EIADAVQQAGATELVVHGRTKEQGYRAE 179 A +A AH +PV+VK R+G D + + A A +GA + +H RT + Y A Sbjct: 165 VVSAAVQAGDAHGVPVTVKTRIGIDPEHITYIDSARAAVDSGAAAVCLHARTVAEAY-AG 223 Query: 180 HIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVV-- 237 H W AIG++ + +++PVI NG+IW+ A + +GC V +GRG L P L R + Sbjct: 224 HSHWDAIGELVKTVDVPVIGNGDIWEASDAMAMVGQTGCAGVEVGRGCLGRPWLFRDLAD 283 Query: 238 ----KYNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQH 293 + EV A+++++ L + G++ + +++ +++ K + E Sbjct: 284 AFAGRDTTTLPTLGEVCAMIRRHAELLVKYQ-GMHGLVDMRKHMAWYLKGFPVGGETRHV 342 Query: 294 VRVLNNSPDIARAIQAIDIE 313 + +++ ++ + +D + Sbjct: 343 LGQISSFDELDSLLATLDHD 362 >UniRef50_A7I0T0 NifR3 family protein n=9 Tax=Epsilonproteobacteria RepID=A7I0T0_CAMHC Length = 310 Score = 259 bits (663), Expect = 9e-68, Method: Composition-based stats. Identities = 80/312 (25%), Positives = 144/312 (46%), Gaps = 16/312 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 + LAP+ G D +R ++ D ++E + + + L+ ++ + Sbjct: 9 LFLAPLAGFSDLPLRSVVKRFG-CDATVSEMISANALVFCSEK------SLKMIKKSENE 61 Query: 63 TLVRVQLLGQFPQWLAENAARAVEL-GSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 T VQ+ G P+ + + ++ G G+DLNCGCP V G+ LL++ +L+ + Sbjct: 62 TPYFVQIAGSDPKIIKQAVEILNKIDGIDGIDLNCGCPVPKVVRQNAGSALLQNLDLLSK 121 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 + +++ S KVRLG+D+ IA AVQ AGA + +H RT+ GY A+ Sbjct: 122 LIEIIKKTSNKKYT-SAKVRLGFDTKNP-VNIALAVQNAGADFIAMHARTRAGGYSAKP- 178 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNE 241 D++AI + + IP+IANG I Q+A Q + ++ DA+MIGR + P + +K + Sbjct: 179 DYEAIAAAKSAVKIPLIANGNINS-QNANQILNLTKADALMIGRATIGNPWVFYEIKNQK 237 Query: 242 PRMPWPEVVA--LLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNN 299 ++ +L + + K + R + L K Y +AT + + N Sbjct: 238 TVAVDEKIKKEIILAHFDEMIKFYGDHGAVIFR--KHLHEYSKGYADATNFRCEINTITN 295 Query: 300 SPDIARAIQAID 311 + + I+ Sbjct: 296 AEKMRDKIKQFF 307 >UniRef50_Q5CSA9 Dus1p, tRNA dihydrouridine synthase (Fragment) n=3 Tax=Cryptosporidium RepID=Q5CSA9_CRYPV Length = 409 Score = 258 bits (660), Expect = 2e-67, Method: Composition-based stats. Identities = 71/315 (22%), Positives = 126/315 (40%), Gaps = 16/315 (5%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 + +LAPM + R + + DL + ++ + N Sbjct: 20 KTVLAPMVDGSELAFRLICKKYG-CDLGYSPMYHS-GLFSKLQGYRET-----NFQTCEE 72 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + VQ G P+ L + A++ ++ G+D+N GCP GA LL +P+L+ + Sbjct: 73 DDPMIVQFCGNDPETLVK-ASKFIDDKVKGIDINFGCPQNIAKRGNYGAFLLSNPDLMER 131 Query: 122 GAKAMREAVPAHLPVSVKVRL-GWDSGEKKFEIADAVQQAGATELVVHGRT-KEQGYRAE 179 + E+ PVS K+R+ + + ++ AGA + VHGRT +G Sbjct: 132 IISTLSES-DLKCPVSCKIRILDHHDLQPTINLIKRLESAGACMIAVHGRTMTSRGVLTG 190 Query: 180 HIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY 239 +W+A+ ++ R +IP IANG I +++ Q+C+ +G DAVM G L P L + K Sbjct: 191 PANWEALKILKSRCSIPFIANGGISNYEDIQKCLNYTGADAVMSAEGILENPWLFQGFKT 250 Query: 240 NEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRK---EYDEATELFQHVRV 296 E P + +Y V I+ L + A + Sbjct: 251 PEAINNKPSQFQIALEYLDYCILYPPPN--VGIIRTHLYRIFHTIFSLPGAHIFRDEINN 308 Query: 297 LNNSPDIARAIQAID 311 + + +Q ++ Sbjct: 309 SHQVHEFQLFVQNLE 323 >UniRef50_UPI000194DF67 PREDICTED: dihydrouridine synthase 3-like (S. cerevisiae) n=2 Tax=Taeniopygia guttata RepID=UPI000194DF67 Length = 718 Score = 258 bits (660), Expect = 2e-67, Method: Composition-based stats. Identities = 79/312 (25%), Positives = 131/312 (41%), Gaps = 23/312 (7%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 ++ LAP+ + R + D+ E + L E R + Sbjct: 374 KLYLAPLTTCGNLPFRRICKRFG-ADVTCGEMAVCTNLLQGQ------SSEWALLKRHHT 426 Query: 62 GTLVRVQLLGQFPQWLAENAARAVE-LGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 + VQL G FP + + A + VD+N GCP V GGG L+ Sbjct: 427 EDIFGVQLEGAFPDTMTKCAELLNRTIDVDFVDINVGCPIDLVYKKGGGCALMTRSNKFE 486 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSG-EKKFEIADAVQQAGATELVVHGRTKEQGYRAE 179 Q + M + +PV+VK+R G ++ +++ GA+ + +HGR++EQ Y Sbjct: 487 QIVRGMNSVL--DVPVTVKIRTGVQEKVNVAHKLIPRIREWGASMVTLHGRSREQRY-TR 543 Query: 180 HIDWQAIGDIRQ-RLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK 238 DW I + + +P+ NG+I ++ A + M + G +MI RGAL P L +K Sbjct: 544 SADWHYIAECARLASPMPLFGNGDILSYEDANRAMQM-GVSGIMIARGALIKPWLFTEIK 602 Query: 239 YN-EPRMPWPEVVALLQKYTR--LEKQG-DTGLYHVAR--IKQWLSYLRKEYDEATELFQ 292 + E +L+ +T LE G DT R + +WLS+L + L + Sbjct: 603 EQRHWDISSSERFEILKDFTNYGLEHWGSDTQGVEKTRKFLLEWLSFLCRYIPVG--LLE 660 Query: 293 HV-RVLNNSPDI 303 H+ + +N P Sbjct: 661 HLPQKINERPPY 672 >UniRef50_A9GW95 Dihydrouridine synthase TIM-barrel protein nifR3 n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GW95_SORC5 Length = 328 Score = 258 bits (659), Expect = 2e-67, Method: Composition-based stats. Identities = 83/298 (27%), Positives = 139/298 (46%), Gaps = 14/298 (4%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 V+LAPME V D++ R + E+ +LC+TEFV V L K R + Sbjct: 17 VVLAPMEDVTDAVFRRIGRELG-AELCVTEFVNVEGLLRGCKTARRKL------ALADGD 69 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 +Q+ G P+ LAE A A E G +D+NCGC + G G GA L+DPE + Sbjct: 70 QPTAIQIYGANPERLAEAARVAEEAGPAFLDINCGCWVPKIAGRGAGAGWLRDPEAMVAM 129 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHID 182 A+ + +V + V ++ G +S ++A ++ AG L +H RT + G+ D Sbjct: 130 ARLVTRSVALPVTVKTRIGWGPESHMPIVDLARRLEDAGVAALTIHCRTAQMGHSG-AAD 188 Query: 183 WQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY--- 239 W R+ ++IPV+ NG+I A + + +GC VM+GR A++ P + R + Sbjct: 189 WGWAARAREVVSIPVVVNGDIKTADDAARALRETGCAGVMVGRAAIDHPWIFREARALLD 248 Query: 240 ---NEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHV 294 + P E +AL + + + + V ++ L+ + A+ L + + Sbjct: 249 DGVHLPPPTAEERLALCRAHLIANTEARGEPHGVRVTRRHLTGYLRGLPGASALRREL 306 >UniRef50_C9RMP3 Dihydrouridine synthase DuS n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RMP3_FIBSS Length = 392 Score = 257 bits (658), Expect = 3e-67, Method: Composition-based stats. Identities = 80/294 (27%), Positives = 135/294 (45%), Gaps = 20/294 (6%) Query: 4 LLAPMEGVLDSLVRELLTEVND--YDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 +L+PM+GV D+ R L ++ L ++EFV + H+ P Sbjct: 25 ILSPMDGVTDAPFRRLCRVLSGDRMGLLVSEFVPTDGDAVFNPDGHK------QLKFFPE 78 Query: 62 GTLVRVQLLGQFPQWLAENAARAVE-LGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 VQ+ G+FP +A A + E +++N GCP+ V G G G+ LL+D + Sbjct: 79 ERPFGVQIFGRFPDRMAAAAGKIAERYHPEFIEVNAGCPAPKVAGKGSGSGLLRDLPRLQ 138 Query: 121 QG---AKAMREAVPAHLPVSVKVRLGWDSGEKKF-EIADAVQQAGATELVVHGRTKEQGY 176 + KA+ +A +P+++K R+GWD E + G L VHGRT+ QGY Sbjct: 139 EILHDVKAVLDAKTPEIPLTLKCRIGWDDDSINVMETLKIAEGEGVEMLTVHGRTRLQGY 198 Query: 177 RAEHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRV 236 +W IG + IPVI NG++ + A++ + G V IGRGA++ P + Sbjct: 199 NG-LANWDWIGKVAAAAKIPVIGNGDVNSVECARERINTYGVSGVSIGRGAMHNPWIFGQ 257 Query: 237 VK-----YNEPRMPWPEVVALLQKYTRLEKQ-GDTGLYHVARIKQWLSYLRKEY 284 + + + E + + Y + + + G T + + R+KQ + L K + Sbjct: 258 IADAWEGREKHVITAQEALDVFPLYYKFKIEDGATEMNAMGRMKQLAARLCKGF 311 >UniRef50_C1ZB06 tRNA-dihydrouridine synthase n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZB06_PLALI Length = 381 Score = 257 bits (658), Expect = 3e-67, Method: Composition-based stats. Identities = 85/315 (26%), Positives = 132/315 (41%), Gaps = 15/315 (4%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 R LAP+ G R L E+ L T+ V V L ++ + + Sbjct: 50 RYGLAPLAGYTQRPFRVALRELGGMGLATTDLVHAVKLLSNNAFSQQL------IATSLL 103 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + VQL G P +A A +LG GVDLN GCP VN GGGA L+ DP + Sbjct: 104 DQPLSVQLFGADPTHVATAARWLEDLGYEGVDLNMGCPMAKVNSQGGGARLMCDPTGATR 163 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 + +V +PV+VK+RLGWD+ +A ++ GA + +HGRT+ QG+ + Sbjct: 164 LVALVVASVS--IPVTVKMRLGWDAQSLSAPLLARQFEEVGAAAITIHGRTRAQGFSGKV 221 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 + +IPVI NG++ + A +GC AV IGRGA+ P + R + Sbjct: 222 SREGIAATVAAVQSIPVIGNGDVRTVEDAISMRRETGCAAVAIGRGAMLDPWIFRKLHDF 281 Query: 241 E-----PRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVR 295 E E + L + R E G +++ + +L +R Sbjct: 282 EMTGQYAEPGPEEQIQFLVTHFR-EMVDLFGEQATRLFRKFAGWYGARLGIPQDLEDRLR 340 Query: 296 VLNNSPDIARAIQAI 310 + + + + I Sbjct: 341 RVESLSEFEEIVAEI 355 >UniRef50_UPI000058804E PREDICTED: similar to MGC53781 protein n=1 Tax=Strongylocentrotus purpuratus RepID=UPI000058804E Length = 655 Score = 257 bits (657), Expect = 4e-67, Method: Composition-based stats. Identities = 82/319 (25%), Positives = 129/319 (40%), Gaps = 22/319 (6%) Query: 6 APMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGTLV 65 AP+ V + R + ++ D+ E + L E R PS + Sbjct: 287 APLTTVGNLPFRAVCKKLG-ADITCGEMAMCTNLLQGQ------SSEWALLRRHPSEDIF 339 Query: 66 RVQLLGQFPQWLAENAARAVE-LGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAK 124 VQL G FP + A + L +D+N GCP V G G+ L+ + + Sbjct: 340 GVQLCGGFPDTMTRCAELLNDRLDIDFIDINVGCPIDLVYHKGAGSGLMNRMGKFQEIVR 399 Query: 125 AMREAVPAHLPVSVKVRLGWDSGEK-KFEIADAVQQAGATELVVHGRTKEQGYRAEHIDW 183 M + +P++VK+R G + +I + GA+ + VHGRT+EQ Y + DW Sbjct: 400 GMSSVL--DIPLTVKMRTGVHNDNPVAHKIVRRIYDWGASVVTVHGRTREQRYS-KLADW 456 Query: 184 QAIGDIRQRLN-IPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN-E 241 + D Q + P I NG+I ++ + SG MI RGAL P + +K Sbjct: 457 DYLKDCVQAADPHPFIGNGDILSYEDSNFFREQSGATGQMIARGALIKPWIFTEIKEQRH 516 Query: 242 PRMPWPEVVALLQKYTR--LEKQG--DTGLYHVAR-IKQWLSYLRKEYDEATELFQHVRV 296 + E +LQ Y L G G+ R + +WLS+L + L + Sbjct: 517 WDISSSERFDILQDYINLGLLHWGSDSEGVRKTRRFLLEWLSFLHRYIP-VGLLETLPQK 575 Query: 297 LNNSPDIARAIQAIDIEKL 315 +N P + D+E L Sbjct: 576 INERPPY--YVGRDDLETL 592 >UniRef50_D0NNQ3 tRNA-dihydrouridine synthase, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0NNQ3_PHYIN Length = 377 Score = 257 bits (657), Expect = 4e-67, Method: Composition-based stats. Identities = 79/310 (25%), Positives = 127/310 (40%), Gaps = 15/310 (4%) Query: 4 LLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGT 63 ++APM + R L ++ D C T + + ++ Sbjct: 27 IVAPMVDQSELAFRMLCRKLG-ADCCYTPMLHSRLFAESAEYREKM------FEHHIQDR 79 Query: 64 LVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGA 123 + VQ G P+ + AA+ VE VDLN GCP G+ L+ D E + Sbjct: 80 PLVVQFCGNDPKTVL-AAAKMVEGHCDAVDLNLGCPQGIARKGHYGSFLMHDKETVKATV 138 Query: 124 KAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRA-EHID 182 K + + ++PV+VK+R+ D E E AD +Q+AG L VHGRTKE A ++ Sbjct: 139 KTLSAGL--NIPVTVKIRVFPDDNE-TLEFADMLQEAGCDLLTVHGRTKEMNKTAVREVN 195 Query: 183 WQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNEP 242 W I I++RL IPVIANG I + +C+ +GCD VM G L P L N Sbjct: 196 WDIIRRIKERLTIPVIANGGIETHEDIARCLEATGCDGVMSSEGLLENPALFA--DTNNT 253 Query: 243 RMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNNSPD 302 + L ++Y + R L ++ ++L + + + Sbjct: 254 PGEDTSFLELARQYLECATLYPPASDKIVRA-HLFKILFQDLRVHSDLRDALAAAKSQQE 312 Query: 303 IARAIQAIDI 312 + + + + Sbjct: 313 MVEIVDELAV 322 >UniRef50_UPI0001BCCF0E nifR3 family TIM-barrel protein n=1 Tax=Aeromicrobium marinum DSM 15272 RepID=UPI0001BCCF0E Length = 429 Score = 257 bits (656), Expect = 5e-67, Method: Composition-based stats. Identities = 83/366 (22%), Positives = 144/366 (39%), Gaps = 64/366 (17%) Query: 3 VLLAPMEGVLDSLVRELLTEVND------------------------------------- 25 V+LAPM GV ++ R+L E Sbjct: 21 VVLAPMAGVTNAAFRQLCAEQGALRGSQARTSGQALRGSQARTSGQALRGSQARTSGQAL 80 Query: 26 ----------YDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGTLVRVQLLGQFPQ 75 L + E + + + L + P+ + VQL G P Sbjct: 81 RGSQARTSGQAGLYVCEMITSRGVVEGDRT------SLGMLTFAPNERVRSVQLYGIDPA 134 Query: 76 WLAENAARAV-ELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGA-KAMREAVPAH 133 + A + G VDLN GCP V GGGA L L+ + +A+ A P Sbjct: 135 TVGRAVAILCGDHGVDHVDLNFGCPVPKVTRKGGGAALPWKATLLGRILTEAVAAAAPFG 194 Query: 134 LPVSVKVRLGWDSGEKKF-EIADAVQQAGATELVVHGRTKEQGYRAEHIDWQAIGDIRQR 192 +PV++K R G D + + + +G + +HGRT Q Y E DW AI ++ Sbjct: 195 VPVTMKTRKGIDDDHLTYLDAGHIAEDSGCAAIALHGRTAVQHYSGE-ADWAAIAALKAA 253 Query: 193 LNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY---NEPRMP---- 245 ++IPV+ NG++W+ A + + +GCD V++GRG L P L R + E +P Sbjct: 254 VSIPVLGNGDVWEAADALRMVRETGCDGVVVGRGCLGRPWLFRDLAAAFTGEETVPALPT 313 Query: 246 WPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNNSPDIAR 305 EV+A+++++ L ++ +++ K + + Q + +++ + Sbjct: 314 LGEVMAIMRRHAELLGGWLGEERGCVEFRKHVAWYLKGFPAGPSVRQRLGQVSSYAALDE 373 Query: 306 AIQAID 311 + +D Sbjct: 374 LLVELD 379 >UniRef50_O67533 Probable tRNA-dihydrouridine synthase n=1 Tax=Aquifex aeolicus RepID=DUS_AQUAE Length = 316 Score = 257 bits (656), Expect = 5e-67, Method: Composition-based stats. Identities = 78/316 (24%), Positives = 145/316 (45%), Gaps = 13/316 (4%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 V+LAPM S R L + D TE + V L R ++ A T Sbjct: 8 VILAPMASYTHSAFRRLCRRLG-ADRTYTELISAVGVL-------RNGIPMKLAYFTEEE 59 Query: 63 TLVRVQLLGQFPQWLAEN-AARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + +Q+ G P+ +A+ A EL +D+N GC V + +L+ P L+ + Sbjct: 60 RPIHIQVFGSNPEEIAQASVVIAKELKPDFIDINFGCSVPKVLRNKAAGYMLQCPPLMGE 119 Query: 122 GAKAMREAV-PAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 K EA+ P +PVS K+RLG++ E I + +Q+AG + + +H RT +QG+ + Sbjct: 120 VVKETVEALKPYGIPVSAKIRLGFEKDEV-ERIVEELQKAGVSLIAIHARTAKQGFSGK- 177 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY- 239 W I + ++ ++P+I +G++ W+ ++ + CD VM+GR AL+ P + + K Sbjct: 178 ALWHRIKEAKKVASVPIIGSGDVKSWRDIERMFEETECDGVMVGRAALSNPWIFKEFKEK 237 Query: 240 NEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNN 299 + + E + + + + + + A IK + + K + EL ++ N Sbjct: 238 RDIEVGLKERMDFILEELSMMTEYMSREKACAEIKSQIVQILKGVPNSRELKTYIVHAEN 297 Query: 300 SPDIARAIQAIDIEKL 315 ++ + I+ +L Sbjct: 298 CKELVKRIEEAKEREL 313 >UniRef50_D1U4K9 Dihydrouridine synthase DuS n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U4K9_9DELT Length = 339 Score = 256 bits (654), Expect = 8e-67, Method: Composition-based stats. Identities = 79/312 (25%), Positives = 139/312 (44%), Gaps = 17/312 (5%) Query: 4 LLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGT 63 LAP+ G D R L+ + + +E V V + R+ + P Sbjct: 12 WLAPLAGYSDLPFRLLVKR-HGCAVACSEMVSVKGMTFGNEGTQRL------IATCPEDD 64 Query: 64 LVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGA 123 + +QL G P V+LG DLN GCP + V SG G L++DP+ + + A Sbjct: 65 PMVLQLFGADPDLFGPVMDWLVDLGYRNFDLNAGCPVRKVLKSGSGVKLMEDPDTLVRIA 124 Query: 124 KAMREAVPAHLP---VSVKVRLGWDS-GEKKFEIADAVQQAGATELVVHGRTKEQGYRAE 179 M E AH V VK RLG+D + E+A ++ AG + +H R Q + + Sbjct: 125 SVMVERATAHARGGQVGVKFRLGFDKGNDTYLELARRLEDAGVHWVTLHPRYGRQMFAGQ 184 Query: 180 HIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLS----R 235 DW +G +++ ++IPV+A+G+++ + +C+ +G DAVM RGAL P + Sbjct: 185 -ADWSKLGLLKRAVSIPVVASGDLFTAEDGVRCVEETGVDAVMFARGALYDPAIFDRYRT 243 Query: 236 VVKYNEPRMPWPEVVA-LLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHV 294 ++ +P E +A +++++ RL ++ + +I+ + K L + Sbjct: 244 LLAGGQPEPRSGESLARIVREHIRLTREFEGDGRSFRKIRSIIPRYAKGLRGIRALRGSL 303 Query: 295 RVLNNSPDIARA 306 + + A Sbjct: 304 LECRDWEALEEA 315 >UniRef50_A8N483 Putative uncharacterized protein n=2 Tax=Agaricales RepID=A8N483_COPC7 Length = 561 Score = 256 bits (654), Expect = 9e-67, Method: Composition-based stats. Identities = 73/266 (27%), Positives = 106/266 (39%), Gaps = 10/266 (3%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRT-- 59 + ++APM + R L + L T + PV +R + Sbjct: 35 KYIVAPMVDQSELAFRRLCRQYG-AQLIYTPMINAKMFTDPVNKSYRASAFDIASGEEGD 93 Query: 60 -PSGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPEL 118 S + VQ P L ++A + VE VD+N GCP G+ L D L Sbjct: 94 MASDRPLIVQFCANDPDQLLQSA-KVVEKYCDAVDINLGCPQDIAKRGRYGSFLQDDWPL 152 Query: 119 IYQGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQG-YR 177 IY + V +PV+ K R+ + EK E A +++AGA L HGR +EQ Sbjct: 153 IYSMINTLH--VNLSIPVTAKFRV-FPDVEKTVEYAKMLERAGAQILTCHGRIREQRGQN 209 Query: 178 AEHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVV 237 DW I +++ + +PV ANG I +C+ +GCD VM G L P L + Sbjct: 210 TGLADWSKIRAVKEAVKVPVFANGNILFQDDIARCLEETGCDGVMSAEGILYNPALFYGL 269 Query: 238 KYNEPRMPWPEVVALLQKYTRLEKQG 263 P P L +T L Q Sbjct: 270 DA-PSSSPKPPTTDLYPMHTTLASQY 294 >UniRef50_Q9ZLB6 Probable tRNA-dihydrouridine synthase n=23 Tax=Epsilonproteobacteria RepID=DUS_HELPJ Length = 328 Score = 255 bits (651), Expect = 2e-66, Method: Composition-based stats. Identities = 85/316 (26%), Positives = 144/316 (45%), Gaps = 15/316 (4%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 + LAP+ G D R ++ + D+ +E V + ++ ++P Sbjct: 9 LFLAPLAGYTDLPFRSVVKKFG-VDVTTSEMVSSHSLVYAFDKTSKML------EKSPLE 61 Query: 63 TLVRVQLLGQFPQWLAENAARAVEL-GSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 Q+ G + E + L G+D NCGCP+ V G G+ LLKD + + Sbjct: 62 DHFMAQISGSKESVVKEAVEKINALDHVSGIDFNCGCPAPKVANHGNGSGLLKDLNHLVE 121 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 K +RE + SVKVRLG++ K EIA A+ A +VVHGRT+ Y+ + I Sbjct: 122 ILKVIRENTNKKIT-SVKVRLGFEKKIPK-EIAHALNDAPVDYVVVHGRTRSDRYQKDKI 179 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNE 241 D+++I +++ L PVIANGEI + A + + I+ D +MIGR L P + ++ N Sbjct: 180 DYESIALMKKILKKPVIANGEIDSVKKAFEVLQITQADGLMIGRATLRAPWIFWQIRNNT 239 Query: 242 PRMPWPEVVALLQKYT--RLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNN 299 +P L+ ++ +E GD G+ ++ L K +A+ V L Sbjct: 240 TELPAVVKKDLVLEHFDKMVEFYGDRGVIM---FRKNLHAYAKGEMQASAFRNCVNTLTE 296 Query: 300 SPDIARAIQAIDIEKL 315 + +I+ +++ Sbjct: 297 IKSMRESIEEFFNQEM 312 >UniRef50_UPI000186DAF4 tRNA-dihydrouridine synthase, putative n=2 Tax=Eumetazoa RepID=UPI000186DAF4 Length = 557 Score = 254 bits (650), Expect = 3e-66, Method: Composition-based stats. Identities = 76/310 (24%), Positives = 134/310 (43%), Gaps = 21/310 (6%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 ++ L+P+ + + R + E D+ +E L +K E R S Sbjct: 210 KLYLSPLTTLGNLPFRRICKEFG-ADITCSEMAMATSLLQGLK------YEWALIKRHES 262 Query: 62 GTLVRVQLLGQFPQWLAENAARAVE-LGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 L +QL G P + + A E +D+N GCP V GGG+ LL+ +++ Sbjct: 263 EDLFGIQLCGNNPFVMTKCAQLLEESTNVDYIDINLGCPIDLVYQKGGGSGLLRREKVLE 322 Query: 121 QGAKAMREAVPAHLPVSVKVRLG-WDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAE 179 K+M + + LP++VK R G + + +G + + VHGR++EQ Y Sbjct: 323 SVIKSMSKVMS--LPLTVKTRTGVYADKNVAHRLIPMFVDSGVSLITVHGRSREQRY-TR 379 Query: 180 HIDWQAIGDI-RQRLNIPVIANGEIWDWQSAQQCM-AISGCDAVMIGRGALNIPNLSRVV 237 DW I + + IPV NG++ ++ + + + VM+GRGAL P + + + Sbjct: 380 TADWNYINECGKAASPIPVFGNGDVLSFEDYNRALKENNNVSGVMVGRGALYKPWIFKEI 439 Query: 238 KYN-EPRMPWPEVVALLQKYTR--LEKQG-DTGLYHVAR--IKQWLSYLRKEYDEATELF 291 K + E +++K+ L+ G DT + R +WLS+L + L Sbjct: 440 KEQKNWDISSSERFDIIKKFVNYGLDHWGSDTMGVELTRKFTLEWLSFLYRYIP-VGLLE 498 Query: 292 QHVRVLNNSP 301 + + +N P Sbjct: 499 RPPQKINERP 508 >UniRef50_C2D6C5 Possible tRNA-dihydrouridine synthase n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D6C5_9ACTN Length = 390 Score = 254 bits (649), Expect = 3e-66, Method: Composition-based stats. Identities = 83/348 (23%), Positives = 133/348 (38%), Gaps = 48/348 (13%) Query: 1 MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTP 60 M L APM GV +S R ++ + +E V V + + +C Sbjct: 35 MPFLAAPMAGVTNSAYR-IMNRLGGAQYAYSEMVSVAGLCMKNQATRELCLP------HT 87 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSW---GVDLNCGCPSKTVNGSGGGATLLKDPE 117 + + VQL G P A EL +D+N CP V G G+ L+ DP Sbjct: 88 AEPNLIVQLFGSDPVQFQRACALVGELLGDKLSCIDINMACPVPKVTKRGEGSALMCDPH 147 Query: 118 LIYQGAKAMREAVPAHLPVSVKVRLGWD-SGEKKFEIADAVQQAGATELVVHGRTKEQGY 176 +A V +PV+ K+R G+ E E A+Q AGA+ L VHGR +Q Y Sbjct: 148 RACALVRACLREV--RVPVTCKIRRGYYMDHESAAEFGRALQDAGASALAVHGRFAKQLY 205 Query: 177 RAEHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRV 236 + E +W++I + + ++IPVIA+G++ + A + + + AV+I RG P + Sbjct: 206 KGE-ANWESIKRVVEAVDIPVIASGDVMSAEDACRILYKTQAHAVLIARGTYGNPWIFDD 264 Query: 237 V------KYNEPRMPWPEVVALL---------QKYTRLEKQGDTG--------------- 266 K + ++ ALL +++ R DT Sbjct: 265 ALKIFNKKKLLLKGNPSDLSALLDAGLYNSSAREHNRHAHITDTHSISARLNALELHLRL 324 Query: 267 ----LYHVARIKQWLSYLRKEYDEATELFQHVRVLNNSPDIARAIQAI 310 H+AR + S+ A Q + +QA Sbjct: 325 LAATHAHMARARSLCSWYLYGLSHAALWRQKFMTATTLDEFLHLLQAF 372 >UniRef50_Q12U52 tRNA-dihydrouridine synthase n=2 Tax=Archaea RepID=Q12U52_METBU Length = 318 Score = 253 bits (648), Expect = 4e-66, Method: Composition-based stats. Identities = 73/312 (23%), Positives = 133/312 (42%), Gaps = 15/312 (4%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 +LLAP+ V + R + + LC TE + + Sbjct: 12 LLLAPLAEVTNLAFRLMCKKYG-ASLCFTEMISSDAVVYGN------ASSAMRGITCDEE 64 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGS-WGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 +QL G P+ + E A ++ +D+N GCP+ + +G G+ LL+ PEL+ Sbjct: 65 RPFGLQLFGNSPEVITEAALVLEDMFYPDMIDINLGCPAPVITNAGCGSALLESPELVSD 124 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 + E V PV+ K+R+ +S ++A ++ AG + VHGRT EQGY Sbjct: 125 IFSTLCEGV--DTPVTAKIRV-LESRAATLDMAHRLEDAGVCAITVHGRTCEQGYSGT-A 180 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNE 241 D I++ L+IPVI NG+I D SA++ + +GCD +MIGR A+ P++ + Sbjct: 181 DHSYAKLIKEELSIPVIVNGDIRDGVSAEKVLEYTGCDGLMIGRAAMGDPHVFHRISRYL 240 Query: 242 PRMPWPEVVALLQKYTRLEKQGDTGLYHVA---RIKQWLSYLRKEYDEATELFQHVRVLN 298 ++ LE + ++ +K + + + + + + + Sbjct: 241 DDGEVIGCGCEQKRDDLLEYLDLLEKFDLSSHINLKAHVQWFTRGLKGSRRMRSDIGYAD 300 Query: 299 NSPDIARAIQAI 310 + I ++ + Sbjct: 301 SRDSIVEFVKNM 312 >UniRef50_Q54XQ6 tRNA-dihydrouridine synthase 1-like protein n=1 Tax=Dictyostelium discoideum RepID=Q54XQ6_DICDI Length = 435 Score = 253 bits (647), Expect = 5e-66, Method: Composition-based stats. Identities = 78/311 (25%), Positives = 140/311 (45%), Gaps = 22/311 (7%) Query: 5 LAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGTL 64 +APM R L + D+ T + K + R S P Sbjct: 56 VAPMVDHTFLAFRMLCRKYG-ADMVYTPMFHSKN-FATCKTYRR-----DYWSTCPEDRP 108 Query: 65 VRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAK 124 + VQ G P+W+ + AA+ +E +DLN GCP + G+ LL P +I + Sbjct: 109 LVVQFCGNEPEWVVK-AAKYIEDHCDAIDLNLGCPQQIARRGNYGSFLLDKPHIILPIVQ 167 Query: 125 AMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQ-GYRAEHIDW 183 + + + +P+ K+RL + + ++A +Q+AG L +HGRTKEQ G+ + +W Sbjct: 168 ELHKHI--KVPIFCKIRL-LPNLDDTIKLALQLQEAGCQLLTIHGRTKEQKGHNSGIANW 224 Query: 184 QAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNEPR 243 +AI IR++L+IPVIANG + ++ +C+ +G D VM G L P+ +K Sbjct: 225 KAIRTIREQLSIPVIANGSVVQYEDIDRCLEETGADGVMSAEGILANPSFFSGLK----- 279 Query: 244 MPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNNSPDI 303 + + ++Y + T + HV R L+++ D ++L + + + + Sbjct: 280 ---VPIYQVAREYIDFTEIYKTSI-HVTRS-HIFKMLKEKLDVYSDLRETMGATHTNDGF 334 Query: 304 ARAIQAIDIEK 314 I ++ + Sbjct: 335 RDIITDLETRE 345 >UniRef50_C0QXB6 Dihydrouridine synthase-like (DUS-like) FMN-binding domain protein n=2 Tax=Brachyspira RepID=C0QXB6_BRAHW Length = 325 Score = 253 bits (647), Expect = 6e-66, Method: Composition-based stats. Identities = 83/323 (25%), Positives = 139/323 (43%), Gaps = 23/323 (7%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 R LAPM G D + R L + L +TE V VK +R Sbjct: 15 RFFLAPMAGYTDYVFRRLSRKFG-AGLLVTELVSAAALARQVKKTYRYM------EHKED 67 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + +QL G G +D+N GCP+K V + GGA LL+D + + Sbjct: 68 EYPISLQLFGANEDDYKRAIEITDLSGFSFIDINMGCPTKKVVKNNGGAGLLEDTDKMIS 127 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 A++ P LPVSVK+RLG GE + E A A+++ GA L +HGR YR Sbjct: 128 VLNAVKSVSP--LPVSVKIRLGLKRGEGGEIERALAMKENGACFLTLHGRYASDMYRGT- 184 Query: 181 IDWQAIGDIRQRL--NIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVV- 237 DW+AI I++ L + +I NG+I + A + IS D +M+GRGA+ P + + Sbjct: 185 ADWEAIAKIKEALGEDYILIGNGDIKSKEDAVKAFDISKVDGIMVGRGAIGNPWIFTELN 244 Query: 238 -------KYNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATEL 290 +YN + +++++ + + + +++++ Y ++ Sbjct: 245 TIFEDNDEYNNKIDEKDNLKNIIKEHINGCCELYGEVSGIHFMRKFIMKYLTGYRMENKI 304 Query: 291 FQHVRVLNNSPDIARAIQAIDIE 313 + N ++ + + I E Sbjct: 305 --ELMKCENKEELFKILDNIITE 325 >UniRef50_Q7ZWS1 tRNA-dihydrouridine synthase 3-like n=3 Tax=Xenopus RepID=DUS3L_XENLA Length = 640 Score = 253 bits (647), Expect = 6e-66, Method: Composition-based stats. Identities = 76/312 (24%), Positives = 131/312 (41%), Gaps = 23/312 (7%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 ++ LAP+ + R + + D+ E + L E R S Sbjct: 296 KLYLAPLTTCGNLPFRRICKRLG-ADITCGEMAMCTNLLQGQ------PSEWALLKRHHS 348 Query: 62 GTLVRVQLLGQFPQWLAENAARAVE-LGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 + VQL G FP + + A + VD+N GCP V GGG L+ Sbjct: 349 EDIFGVQLEGAFPDTMTKCAELLNRTIDVDFVDINVGCPIDLVYKKGGGCGLMNRTNKFE 408 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSG-EKKFEIADAVQQAGATELVVHGRTKEQGYRAE 179 Q K M + +P++VK+R G ++ ++ G + + +HGR++EQ Y + Sbjct: 409 QIVKGMNSVL--DVPLTVKIRTGVQEKVNIAHKLIPNLRDWGVSLVTLHGRSREQRY-TK 465 Query: 180 HIDWQAIGDIRQ-RLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK 238 +W+ I + +P+ NG+I ++ A + + +G VM+ RGAL P L +K Sbjct: 466 LANWEYIDQCAKIASPVPLFGNGDIISYEDANRALQ-TGVAGVMLARGALFKPWLFTEIK 524 Query: 239 YN-EPRMPWPEVVALLQKYTR--LEKQGDT--GLYHVAR-IKQWLSYLRKEYDEATELFQ 292 + E +L+ +T LE G G+ + + +WLS+L + L + Sbjct: 525 EQRHWDISSTERFDILKDFTNYGLEHWGSDCQGVEKTRKFMLEWLSFLCRYIPVG--LLE 582 Query: 293 HV-RVLNNSPDI 303 HV + +N P Sbjct: 583 HVPQKINERPPY 594 >UniRef50_Q72EB7 Dihydrouridine synthase family protein n=4 Tax=Desulfovibrio RepID=Q72EB7_DESVH Length = 332 Score = 253 bits (646), Expect = 8e-66, Method: Composition-based stats. Identities = 81/310 (26%), Positives = 124/310 (40%), Gaps = 13/310 (4%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 + LAP+ GV RE++ + L T + +P + R R Sbjct: 12 LWLAPLAGVGHVAFREVIDNLGGCGLLFTGMCNA--RAVPTENPARSN---AFTWRAEEL 66 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 QL G P +AE A R G +GVD+N GC + G GA LL+D E + Sbjct: 67 ERCVCQLFGADPSEMAEAARRVEAEGFFGVDINMGCSVAAIVRRGCGADLLRDEERAVRM 126 Query: 123 AKAMREAVPAHLPVSVKVRLGWD-SGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 +++R AV PV VK R GW + +A + AGA LV H R + Sbjct: 127 VESVRRAV--DCPVLVKFRTGWSPDPQGAVALARRFEDAGADALVFHPRVAPDRRTRPPL 184 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRV----V 237 I +++ + IPV+ NGE++ A + +GCD + +GR AL P + V Sbjct: 185 R-HHIRLVKEAVAIPVLGNGEVFTPGDAASMLETTGCDGISLGRIALGRPWVFAAWTGLV 243 Query: 238 KYNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVL 297 N P L LE++ Y K++L Y + L + Sbjct: 244 DDNPASNPDLWRDIPLALLDALERRHADRKYAARLFKKFLLYFIANFTYGNSLRGPMLKG 303 Query: 298 NNSPDIARAI 307 ++ D+ A+ Sbjct: 304 DDPADLRTAL 313 >UniRef50_C5CI99 Dihydrouridine synthase DuS n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CI99_KOSOT Length = 314 Score = 252 bits (645), Expect = 8e-66, Method: Composition-based stats. Identities = 85/313 (27%), Positives = 139/313 (44%), Gaps = 24/313 (7%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 V LAPM G D +R + E D +E + V L + +I PE Sbjct: 6 VGLAPMAGYTDEAMRAISLEWG-ADFVFSEMLSVEGVLRNDRTTQKIIPE---------- 54 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 T R+QL G LA AA+AV + D+N GCP K V G GA LL++PE + Sbjct: 55 TPCRIQLFGNDIARLA-MAAKAVLDKATWFDINAGCPVKKVVKRGAGAALLREPEKLNAM 113 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHID 182 + ++ + LPVSVK+RLGWD E +I + + ++ ++VHGRT QGY D Sbjct: 114 IQTLKGI--SDLPVSVKIRLGWDKNEV-VKIVERLVESRPFAIMVHGRTVVQGYSG-VAD 169 Query: 183 WQAIGDIRQRLN---IPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY 239 W++IG + + I V +G+++ + + G D V++ RGA+ P + K Sbjct: 170 WESIGKVVKICKPHGIKVYGSGDVFSPEKIVEAFEKYGVDGVLVARGAIGNPWIFSQYKE 229 Query: 240 NEPR-----MPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHV 294 + + E + + K+ + + + ++ K AT++ + Sbjct: 230 LKQKGSYTVPDPHERLKVFAKHLKKLIELKGEERAIIESRKHFVGYCKGLLNATKMRREY 289 Query: 295 RVLNNSPDIARAI 307 L N D+ + Sbjct: 290 MKLKNKTDVENFL 302 >UniRef50_A5EVV4 Dihydrouridine synthase n=2 Tax=Cardiobacteriaceae RepID=A5EVV4_DICNV Length = 318 Score = 252 bits (645), Expect = 1e-65, Method: Composition-based stats. Identities = 80/301 (26%), Positives = 127/301 (42%), Gaps = 14/301 (4%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 VLLAPM G+ D R L + I E V Q L + ++ + + +R P Sbjct: 14 VLLAPMAGISDLPYRSLCQRFGSH-YTIAEMVDARPQFLAMPE-SQLRLQFDDDARFPK- 70 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 VQL+G P +AE A LG +D+N GCP+K V G+ LL D + + Sbjct: 71 ---IVQLVGGDPYLMAETAQVMQALGCDVIDINMGCPAKKVGKQNAGSALLSDLPQVEKI 127 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGEKKFE-IADAVQQAGATELVVHGRTKEQGYRAEHI 181 + V +PV++K RLG++ E +A + G L VHGRT+ Q + Sbjct: 128 LAQVTRVVS--IPVTLKTRLGFNEQTMTIETVAKIAENTGVAALTVHGRTRAQRFNGT-A 184 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLS---RVVK 238 + IG ++ + ++P+I NG+I AQ + G D VMIGR A P L R Sbjct: 185 HYDEIGRVKAQTSLPIIVNGDITTTAQAQDLIQQFGFDGVMIGRAACGNPWLLAHMRCAL 244 Query: 239 YNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLN 298 + +P A++ ++ Q + ++ L + Q + Sbjct: 245 DCDFALPAISRRAVISEHISALHQ-LYQRQGLLIARKHLHWYLAPMPRYDFWRQEINTAT 303 Query: 299 N 299 + Sbjct: 304 D 304 >UniRef50_B1GZV7 Putative tRNA-dihydrouridine synthase n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1GZV7_UNCTG Length = 320 Score = 252 bits (644), Expect = 1e-65, Method: Composition-based stats. Identities = 76/316 (24%), Positives = 129/316 (40%), Gaps = 18/316 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 ++LAPM G+ D +R L + L T + + + ++ T Sbjct: 15 IILAPMAGITDLPLRRL-AKSGGAGLVYTGMLSARALVRSDEKTEKLLKT------TEDE 67 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 V Q+ G +AE A G+ +D+N GCP K V +G GA LL D +L+ + Sbjct: 68 RPVAAQIFGSAAHIMAEAAKIVRNSGADIIDVNLGCPVKKVAKAGAGAKLLADEKLVSEI 127 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGEKKF-EIADAVQQAGATELVVHGRTKEQGYRAEHI 181 +++ ++V +PV+VK+R G EI G + VH R QG+ Sbjct: 128 LESVVKSV--DVPVTVKIRTGLLPEHNAATEIIKVAYNCGIKMVAVHARPASQGHSGFP- 184 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY-- 239 D + IPVIANG + D ++A + + C +MIGRGAL ++ + ++ Sbjct: 185 DLKLFAASCAGAKIPVIANGGVVDEKTAADFLRVPNCAGIMIGRGALGNYSIFKRLEAFF 244 Query: 240 ----NEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHV- 294 P E V L+K+ + + +K+ Y K+ A ++ Sbjct: 245 SSGKKLPLPSKTEKVEWLKKHVQYSVEYYGEKKGFVVMKKVFHYYVKDLPNAAKIRDIFN 304 Query: 295 RVLNNSPDIARAIQAI 310 + + D I+ Sbjct: 305 KKIVTLSDFNELIKLF 320 >UniRef50_Q6AKJ6 Putative uncharacterized protein n=1 Tax=Desulfotalea psychrophila RepID=Q6AKJ6_DESPS Length = 354 Score = 252 bits (644), Expect = 1e-65, Method: Composition-based stats. Identities = 75/311 (24%), Positives = 135/311 (43%), Gaps = 14/311 (4%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 + LAPM G+ S +R L+ ++ L TE + ++ H TP Sbjct: 44 LSLAPMVGLSHSALRSLIADLGGCGLFYTEMLAAR------RLPHENPAVSSYLHTTPCE 97 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 + QL +++A + LG GVD+N GCP+ +V G GA L +D + + Sbjct: 98 RPLIYQLFIADVKYVAPALDKIHRLGGDGVDINLGCPAPSVRRGGAGAALAEDWDRVRDI 157 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 + R L +S K+R+G E + ++ G L VH R + + + Sbjct: 158 VSSARRH--TDLTLSAKIRVGHVGKEAHLLDFCKMLEAEGVDLLAVHARYHGEKFCRKP- 214 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNE 241 WQ + I ++L+IP+ ANG I+ A++C+ +SG +M+GRGA+ P L + Sbjct: 215 RWQLLAPICEQLDIPIFANGGIFSVDDARRCLELSGAAGLMLGRGAVERPWLFNEIAREV 274 Query: 242 PRMPWP----EVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVL 297 + P V + ++ + + + RIK++ Y+ K + L V+ Sbjct: 275 YGLDLPVAESRPVEIYFRFVQKMVEIFAPERQLGRIKEFTHYIAKNHQFGHHLASAVQKS 334 Query: 298 NNSPDIARAIQ 308 + + +A + Sbjct: 335 HTVEEAVQAAE 345 >UniRef50_C4QMR1 tRNA-dihydrouridine synthase, putative n=1 Tax=Schistosoma mansoni RepID=C4QMR1_SCHMA Length = 441 Score = 251 bits (642), Expect = 2e-65, Method: Composition-based stats. Identities = 76/314 (24%), Positives = 131/314 (41%), Gaps = 30/314 (9%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 + +LAPM + R L + L T + L+ +K + R C + + Sbjct: 11 KYVLAPMVDGSELAWRMLGRKYG-VQLTFTPMINSTAFLINMK-YRRSCLQFAS-----E 63 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + VQ P A + V+ VDLN GCP GA L + + + Sbjct: 64 DRPLIVQFCANSPDTFVRCA-KLVQPFCDAVDLNLGCPQGIAKRGHYGAFLQDEWNSLKE 122 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQ-GYRAEH 180 R ++ ++PV+ K+R+ + E+ + A ++ AGA+ L VHGRT+E G + Sbjct: 123 IIS--RASLELNVPVTCKIRI-FSDVERTVQYAKLLEAAGASMLTVHGRTREMKGQKTGL 179 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 DW I +++ + IPVIANG I QC+ + DAVM G L+ P L ++ Sbjct: 180 ADWNQIRAVKEAVKIPVIANGNIQYLSDVHQCLDSTKADAVMSAEGHLHNPALFLGIQ-- 237 Query: 241 EPRMPWPEVVALLQKYTRLEKQGDTGLY----HVARIKQWLSYLRKEYDEATELFQHVRV 296 P + + +Y L ++ T + H+ ++ DE +E + Sbjct: 238 ------PCIYDMCFEYLDLVEKYPTSMQIIRGHIFKLCHH------ALDEHSEYRSLIGT 285 Query: 297 LNNSPDIARAIQAI 310 ++ I +Q + Sbjct: 286 SQSTKGIKEILQKM 299 >UniRef50_A7BE39 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7BE39_9ACTO Length = 411 Score = 251 bits (642), Expect = 2e-65, Method: Composition-based stats. Identities = 81/373 (21%), Positives = 141/373 (37%), Gaps = 74/373 (19%) Query: 8 MEGVLDSLVRELLTEVN------------------------------------------- 24 M GV D R L + Sbjct: 1 MAGVTDVPFRRLCRIMGESGLPDHLRPVGIPSWAAESGEGATASSPKAPGESSNEPRHVT 60 Query: 25 ------DYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGTLVRVQLLGQFPQWLA 78 L +TE V + + L+ P+ + +QL G P +A Sbjct: 61 IPRVDAPAGLYVTEMVTSRALVEENERT------LEMVRPDPAERVRSLQLYGVNPAVMA 114 Query: 79 ENAARAVELG-SWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPA----- 132 + A VE + +DLN GCP V GGGA L +L A+ A Sbjct: 115 KAATMLVERDLTDHIDLNFGCPVPKVTKKGGGAALPWKRDLFSDLVGAVVRACDEAGERA 174 Query: 133 --HLPVSVKVRLGWDSGEKKF-EIADAVQQAGATELVVHGRTKEQGYRAEHIDWQAIGDI 189 +PV+VK+R+G DS + + A Q+ GA L +H RT+ Q Y A H W I + Sbjct: 175 GREIPVTVKIRIGIDSEHETATDAALNAQKLGAAALTLHARTQNQHY-AGHAHWDEIARL 233 Query: 190 RQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN------EPR 243 + L+IPV NG++++ A + +GCD + +GRGA P + R + P Sbjct: 234 KDLLDIPVFGNGDVFEAADALAMLEQTGCDGISVGRGAQGRPWIFRDIVAAYHGGSIPPG 293 Query: 244 MPWPEVVALLQKYTR--LEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNNSP 301 EVV++++ + + QGD + +++ + + + + + +++ Sbjct: 294 PSLAEVVSVIECHAAWCVVDQGDEE-RALREMRKHIGWYLRGFAVGGPQRHALSMVSTLQ 352 Query: 302 DIARAIQAIDIEK 314 ++ + +D+ + Sbjct: 353 ELHERLADLDLNQ 365 >UniRef50_B8FH09 Dihydrouridine synthase DuS n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FH09_DESAA Length = 328 Score = 251 bits (641), Expect = 3e-65, Method: Composition-based stats. Identities = 76/309 (24%), Positives = 124/309 (40%), Gaps = 12/309 (3%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 R++LAPM G+ RE++ Y L T + + R Sbjct: 11 RLILAPMAGLTHIAFREVMALYGGYGLLYTGMAGAKSVPHENPKVSTV-----FSWREKE 65 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 Q+ G P+ +A+ A R G +GVD+NCGC ++ + GA LL P+L Q Sbjct: 66 LDHTVCQIFGSVPETMAKAAERIEAEGFFGVDINCGCSARAICRFDSGAALLAKPDLAAQ 125 Query: 122 GAKAMREAVPAHLPVSVKVRLGW-DSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 +A+R+AV ++PV VK R GW D +A GA L+ H R R Sbjct: 126 VVRAVRKAV--NIPVIVKFRTGWKDDPAHAVSMARLFCDEGADALIFHPRVAPDL-RTRP 182 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 W+ IG ++ + +PV NG + A + +++SGCD V +GR AL P + ++ Sbjct: 183 PKWEYIGLVKDAVKVPVFGNGNVISLDDAAKMLSMSGCDGVALGRIALAQPWIMAQ--WS 240 Query: 241 EPRMPWPEVVALL-QKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNN 299 + P E + R ++ Y + L + + Sbjct: 241 QGMKPALEDYKTAGAAMASFCAKRFEPRTAFLRFMKFSPYYCANFQFGHALHKRLFAAKE 300 Query: 300 SPDIARAIQ 308 +I ++ Sbjct: 301 IDNIIPVLE 309 >UniRef50_B3RKU4 Putative uncharacterized protein n=2 Tax=Metazoa RepID=B3RKU4_TRIAD Length = 581 Score = 250 bits (639), Expect = 5e-65, Method: Composition-based stats. Identities = 80/323 (24%), Positives = 136/323 (42%), Gaps = 22/323 (6%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 ++ LAP+ V + R + D+ +E L + E R S Sbjct: 236 KLFLAPLTTVGNLPFRRICKTFG-ADVTCSEM------ALCTNLLQGQQSEWALVKRHES 288 Query: 62 GTLVRVQLLGQFPQWLAENAARAVEL-GSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 L +Q+ G +P LA + + VDLN GCP V G G+ L+ + Sbjct: 289 EDLFGLQVCGAWPDTLARLSEYINDRVNVDFVDLNLGCPIDLVFHQGAGSALMGRANKLQ 348 Query: 121 QGAKAMREAVPAHLPVSVKVRLG-WDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAE 179 Q M + +P++VK+R G ++ +++ GA+ + +HGR++EQ Y + Sbjct: 349 QIVTGMSSILS--VPLTVKLRTGILAKKSTAHKLIPQIREWGASLVTLHGRSREQRY-TK 405 Query: 180 HIDWQAIGDIRQRLN-IPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK 238 DW I + + +P+I NG+I ++ + M + VMI RGAL P L +K Sbjct: 406 LADWSYINECATAADPMPLIGNGDILSFEDYLEHMNNTNVAGVMIARGALIKPWLFTEIK 465 Query: 239 Y-NEPRMPWPEVVALLQKYTR--LEKQGDT--GLYHVAR-IKQWLSYLRKEYDEATELFQ 292 + E L+KY LE G G+ R + +WLS+L + L + Sbjct: 466 ERRHWDISANERFEFLRKYVNYGLEHWGSDSLGVEKTRRFLLEWLSFLHRYIPIG-VLER 524 Query: 293 HVRVLNNSPDIARAIQAIDIEKL 315 + +N+ P + D+E + Sbjct: 525 VPQRINDRPPY--YVGRNDLETM 545 >UniRef50_Q1J2A4 Dihydrouridine synthase, DuS n=3 Tax=Deinococcus RepID=Q1J2A4_DEIGD Length = 333 Score = 250 bits (639), Expect = 5e-65, Method: Composition-based stats. Identities = 98/318 (30%), Positives = 149/318 (46%), Gaps = 21/318 (6%) Query: 4 LLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGT 63 +LAPM G D+ +R+L E ++E + +L L P Sbjct: 18 VLAPMAGYSDAPMRQLAAEQGAL-WTVSEMISARGLVLGGDSEK-----LTLGRPYPGEV 71 Query: 64 LVRVQLLGQFPQWLAENAARAVELGSWG-VDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 VQL G P LA+ ARA + +DLN GCP V G G GA LL+ PE+ Y Sbjct: 72 GRVVQLFGAEPDVLAQAVARAESWFAPAALDLNMGCPVPKVKGRG-GACLLQTPEVAYTL 130 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHID 182 +AMR A VS K+RLGWD+ ++ EIA + AGA + VHGRT Q Y E D Sbjct: 131 VRAMRSATTLD--VSAKIRLGWDT-DRSVEIAQGLAAAGAALITVHGRTSVQRYSGE-AD 186 Query: 183 WQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNEP 242 W AI + + +PV+ +G++ + A+ + +G AVMIGRGA+ P L R + + Sbjct: 187 WDAIARVAASVKVPVVGSGDVKSAEQARARLN-TGVAAVMIGRGAVGNPWLFRALASGDD 245 Query: 243 RMPWPEVVA-----LLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVL 297 +P + A Q + GL V +++ L + ++ EL + + Sbjct: 246 VVPSAQERARTALRHAQLHVTFYGPDRFGLLSVRPLRKVLPHYLPDHP---ELRAALVQV 302 Query: 298 NNSPDIARAIQAIDIEKL 315 N D+ +A+ + ++ L Sbjct: 303 NTVADVEQALAPLLVDAL 320 >UniRef50_Q9VIS4 CG10463 n=12 Tax=Drosophila RepID=Q9VIS4_DROME Length = 604 Score = 249 bits (637), Expect = 9e-65, Method: Composition-based stats. Identities = 77/303 (25%), Positives = 132/303 (43%), Gaps = 29/303 (9%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 +++L+P+ + + R + E D+ E L + E R S Sbjct: 258 KLVLSPLTTLGNLPFRRICKEFG-ADITCGEMACAQPLLKGMGQ------EWALTKRHQS 310 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELG-SWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 + VQL G P L + A E +DLN GCP + GGG+ L++ ++ Sbjct: 311 EDVFGVQLCGNNPNMLNQAAQVIHETAQVDFIDLNIGCPIDLIYQQGGGSALMRRTNILE 370 Query: 121 QGAKAMREAVPAHLPVSVKVRLG-WDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAE 179 ++ A+ LP +VK+R G + E+ V++ GA+ + +HGR++EQ Y + Sbjct: 371 LTVRSC-AALSDRLPFTVKMRTGIYADKSVAHELLPLVEEWGASAVTLHGRSREQRY-TK 428 Query: 180 HIDWQAIGDIRQRLNI-PVIANGEIWDWQSAQQCMAI-SGCDAVMIGRGALNIPNLSRVV 237 H +W I + + PVI NG+I ++ + + +VMIGRGAL P + + + Sbjct: 429 HANWAYIEECAAKAKCMPVIGNGDILSYEDYMERRTLAPHVCSVMIGRGALIKPWIFQEI 488 Query: 238 KYNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVAR-----------IKQWLSYLRKEYDE 286 K + P Q+Y L+K + GL H + +W S+L + E Sbjct: 489 KEKQAWSPSSG-----QRYEMLQKFCNYGLEHWGSDTKGVETTRRFLLEWQSFLYRYIPE 543 Query: 287 ATE 289 A + Sbjct: 544 ALQ 546 >UniRef50_Q256J2 Dehydrogenases n=13 Tax=Chlamydiaceae RepID=Q256J2_CHLFF Length = 339 Score = 249 bits (636), Expect = 1e-64, Method: Composition-based stats. Identities = 76/318 (23%), Positives = 138/318 (43%), Gaps = 18/318 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 ++ AP+ G D R + + L E V++ L+ + S Sbjct: 16 IVYAPLAGFSDYPYRRMSSLYGLPALMFCEMVKIEGLHYSPSRT------LKLLEYSESM 69 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 + QL G P+ E A LG +DLNCGCP+ + G G+ LLK PELI + Sbjct: 70 RPIGGQLCGSKPEMAGEAAKVLEGLGFDLIDLNCGCPTDRITKDGSGSGLLKTPELIGKV 129 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGEKKF-EIADAVQQAGATELVVHGRTKEQGYRAEHI 181 + + +V +PV+VK+R GWD E +++AGA+ + VHGRT+ QGY Sbjct: 130 LEKIIGSVS--IPVTVKIRSGWDGNNINVEETVRIIKEAGASAVFVHGRTRAQGY-VGPS 186 Query: 182 DWQAIGDIRQRL--NIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY 239 + + I + + PV NG+++ ++A+ + +GCD V++ RG + P ++R ++ Sbjct: 187 NLEYIARAKAAAGKDFPVFGNGDVFSPEAAKLMLDSTGCDGVLVARGTMGAPWIARQIED 246 Query: 240 ------NEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQH 293 + A LQ +E+ + + ++ + + L Sbjct: 247 YLTTGTYQKMPFSTRKQAFLQHLHWVEEYYQSEAKFLCETRKLCGHYLISAAKVRFLRSA 306 Query: 294 VRVLNNSPDIARAIQAID 311 + + + + I+A + Sbjct: 307 LSKATSVQAVYQLIEAYE 324 >UniRef50_O53835 Probable tRNA-dihydrouridine synthase n=107 Tax=Actinobacteria (class) RepID=DUS_MYCTU Length = 389 Score = 249 bits (636), Expect = 1e-64, Method: Composition-based stats. Identities = 79/325 (24%), Positives = 133/325 (40%), Gaps = 23/325 (7%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDY------DLCITEFVRVVDQLLPVKVFHRICPELQNA 56 V+LAPM GV + R L ++ L + E V + R + Sbjct: 24 VVLAPMAGVTNVAFRALCRQLEQSKVGTVSGLYVCEMVTAR------ALIERHPVTMHMT 77 Query: 57 SRTPSGTLVRVQLLGQFPQWLAENAARAVELG-SWGVDLNCGCPSKTVNGSGGGATLLKD 115 + + + +QL P A G + +D+N GCP V GGGA L Sbjct: 78 TFSADESPRSLQLYTVDPDTTYAAARMIAGEGLADHIDMNFGCPVPKVTKRGGGAALPFK 137 Query: 116 PELIYQGAKA-MREAVPAHLPVSVKVRLGWDSGEKKF-EIADAVQQAGATELVVHGRTKE 173 L Q A +R +PV+VK R+G D + + GA + +H RT Sbjct: 138 RRLFGQIVAAAVRATEGTDIPVTVKFRIGIDDAHHTHLDAGRIAEAEGAAAVALHARTAA 197 Query: 174 QGYRAEHIDWQAIGDIRQRLN-IPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPN 232 Q Y DW+ I ++Q + IPV+ NG+I+D A M+ +GCD V+IGRG L P Sbjct: 198 QRYSGT-ADWEQIARLKQHVRTIPVLGNGDIYDAGDALAMMSTTGCDGVVIGRGCLGRPW 256 Query: 233 LSRVVKYNEPRMPWP------EVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDE 286 L + P P EV +++++ L + I++ +++ + Sbjct: 257 LFAELSAAFTGSPAPTPPTLGEVADIIRRHGTLLAAHFGEDKGMRDIRKHIAWYLHGFPA 316 Query: 287 ATELFQHVRVLNNSPDIARAIQAID 311 + L + + ++ ++ + +D Sbjct: 317 GSALRRALAMVKTFDELDCLLDRLD 341 >UniRef50_B0UHM8 TIM-barrel protein, nifR3 family n=6 Tax=Rhizobiales RepID=B0UHM8_METS4 Length = 358 Score = 248 bits (635), Expect = 1e-64, Method: Composition-based stats. Identities = 102/311 (32%), Positives = 149/311 (47%), Gaps = 15/311 (4%) Query: 4 LLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGT 63 LLAP+ GV D +R + ++E V D R E + + Sbjct: 31 LLAPLSGVTDLHLRRIARRCG-ASAVVSEMVAAEDLA-------RGSAEARLRAEGEGVR 82 Query: 64 LVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGA 123 VQL G P+W+AE A A G+ +D+N GCP+K V G G+ L++D + + Sbjct: 83 PHVVQLAGCDPRWMAEGARLAEANGADVIDVNMGCPAKKVTGGEAGSALMRDLDHAARLL 142 Query: 124 KAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRAEHID 182 A+REAV +PV+VK+RLGWD ++A + G + + VHGRT++Q Y A D Sbjct: 143 AAVREAVA--VPVTVKMRLGWDDASRNAPDLARRAEALGLSAVTVHGRTRQQFY-AGRAD 199 Query: 183 WQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNEP 242 W AI + + ++IPV+ANG++ A+ C+A SG AVMIGR A+ P L V Sbjct: 200 WAAIRAVVEAVSIPVVANGDVGSLAEARACLAESGAAAVMIGRAAVGRPWLVGAVAAGLR 259 Query: 243 RMPWPEVVALLQKYTRLEK-QGDTGLYHVAR-IKQWLSYLRKEYDEATELFQHVR-VLNN 299 P P + Q E +G LY VA ++ +L D A L R L Sbjct: 260 GAPAPALTRAAQADLAGEHYEGLLALYGVAMGVRHARKHLAAYADHAGGLAAGERARLVT 319 Query: 300 SPDIARAIQAI 310 + D A A+ + Sbjct: 320 TTDPAEALALL 330 >UniRef50_Q54CU9 tRNA-dihydrouridine synthase 3-like n=1 Tax=Dictyostelium discoideum RepID=DUS3L_DICDI Length = 671 Score = 248 bits (635), Expect = 1e-64, Method: Composition-based stats. Identities = 72/308 (23%), Positives = 134/308 (43%), Gaps = 20/308 (6%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 +++LAP+ V + R + + D+ I E L K+ EL R P Sbjct: 325 QLILAPLTTVGNLPFRRICKRLG-ADITIGEM------ALTTKLLEGTKSELALLKRHPC 377 Query: 62 GTLVRVQLLGQFPQWLAENAARAV-ELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 VQ+ G + + A E+ + VD+N GCP V G GA L++ P+ + Sbjct: 378 EDKFGVQICGSYVDAAVKCAEFIENEIDADFVDINSGCPIDLVCNMGAGAALMERPKKVE 437 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKK-FEIADAVQQAGATELVVHGRTKEQGYRAE 179 Q + + ++ P ++K+R+G ++ ++ + GA + +HGR++ Q Y Sbjct: 438 QLLRGISSSLSC--PTTIKIRIGKSEDAPTAHKLIPSLGEWGACAVTLHGRSRAQRYS-R 494 Query: 180 HIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY 239 +W + + +IP+I NG+I+++Q S ++MI RGAL P + +K Sbjct: 495 LANWDYVKQCSEVSSIPLIGNGDIYNYQDVVNIYDSSKVSSIMIARGALIKPWIFTEIKE 554 Query: 240 -NEPRMPWPEVVALLQKYTR--LEKQGDT--GLYHVAR-IKQWLSYLRKEYDEATELFQH 293 E + E + ++ + L+ G G+ + + + WLS+ + L Sbjct: 555 KREWDISASERLDFIRDFANYGLDHWGSDRIGVDNTRKFLLNWLSFSHRYIPVG--LLDK 612 Query: 294 VRVLNNSP 301 V +N P Sbjct: 613 VHYMNERP 620 >UniRef50_D2R6Z1 TIM-barrel protein, nifR3 family n=3 Tax=Planctomycetaceae RepID=D2R6Z1_9PLAN Length = 345 Score = 247 bits (632), Expect = 3e-64, Method: Composition-based stats. Identities = 85/318 (26%), Positives = 126/318 (39%), Gaps = 16/318 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 +L APM G + R+++ E L TE V + L Sbjct: 15 ILQAPMAGYTNYAYRQMVREFGGAGLQATEMVNASGFAWLHEHEAEHPDRLWGVK--EEA 72 Query: 63 TLVRVQLLGQFPQWLAENAARAV-ELGSWGVDLNCGCPSKTVN-GSGGGATLLKDPELIY 120 + VQ+ P LA+ R EL VD+N GCP K V + G+ LLK P+ I Sbjct: 73 RPLAVQMWDNDPATLAKVGERLANELHVSVVDINFGCPVKDVTEKAHSGSYLLKFPDRIA 132 Query: 121 QGAKAMREAVPAHLPVSVKVRLGW-DSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAE 179 Q + + +A A PV+ K+RLG EIA V+ AGA L VHGRT +R Sbjct: 133 QIVERVVKAC-APTPVTAKIRLGCSRDAINAIEIAKVVESAGAAALTVHGRTAADFFRGT 191 Query: 180 HIDWQAIGDIRQRLN-IPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK 238 DW I +I+ L IP+I NG++ + + G D VMI R ++ P L R Sbjct: 192 -ADWNRIAEIKPHLKKIPLIGNGDLDSPEKVIEAFRRYGVDGVMIARASMGRPWLFRQAA 250 Query: 239 Y---NEPRMPWP----EVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELF 291 EP P P + + +L+ Y + ++++ A Sbjct: 251 AALRGEPVPPDPTAEEQRLTMLRHYELTCARFGEQK-GTLLMRKFACNYATGRPGARTFR 309 Query: 292 QHVRVLNNSPDIARAIQA 309 V + D ++ Sbjct: 310 AMVANVFTREDFFNVVER 327 >UniRef50_Q5ZRM0 Nitrogen regulation protein n=6 Tax=Legionella RepID=Q5ZRM0_LEGPH Length = 329 Score = 247 bits (632), Expect = 3e-64, Method: Composition-based stats. Identities = 83/292 (28%), Positives = 139/292 (47%), Gaps = 12/292 (4%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 R++ P+ G + R+L C++E +D L H+ + + R P+ Sbjct: 20 RLIQGPLAGYSCAPFRDLFNIYTPPAYCVSEMCSAIDIL------HKHSSQSRYIYRAPT 73 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + Q+ G P LAE AA+ LG+ +D+NCGCP + G G+ LL+DP+ + Sbjct: 74 EKFLAYQISGNEPHVLAEAAAKLQSLGADLIDINCGCPKSKIRKKGAGSALLEDPQKLIA 133 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 +R A+ +P+++K+R+ + EK +A ++ AGA L+VHGR + Y Sbjct: 134 IISRVRAAIS--IPLTIKIRI--QNNEKDLTLAKQIEDAGAHALIVHGRRWTEDYDI-PC 188 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNE 241 +WQ I +I+ +NIPVI NG+I + S ++ + IS CD MI R P L R + E Sbjct: 189 NWQQIANIKNAVNIPVIVNGDINNIFSLRKALEISACDGFMISRAGTGKPWLYRDLLNLE 248 Query: 242 P-RMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQ 292 + + E + L + + V + K + Y K+ +L Q Sbjct: 249 TNDVAFDEKLKLFMLHLEGLSCLENEYKAVLQSKSLVRYYFKKQLNEQQLQQ 300 >UniRef50_Q96G46 tRNA-dihydrouridine synthase 3-like n=17 Tax=Coelomata RepID=DUS3L_HUMAN Length = 650 Score = 247 bits (631), Expect = 4e-64, Method: Composition-based stats. Identities = 78/311 (25%), Positives = 130/311 (41%), Gaps = 21/311 (6%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 ++ LAP+ + R + D+ E + L E R Sbjct: 306 KLYLAPLTTCGNLPFRRICKRFG-ADVTCGEMAVCTNLLQGQ------MSEWALLKRHQC 358 Query: 62 GTLVRVQLLGQFPQWLAENAARAVE-LGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 + VQL G FP + + A + VD+N GCP V GGG L+ Sbjct: 359 EDIFGVQLEGAFPDTMTKCAELLSRTVEVDFVDINVGCPIDLVYKKGGGCALMNRSTKFQ 418 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSG-EKKFEIADAVQQAGATELVVHGRTKEQGYRAE 179 Q + M + + +P++VK+R G + ++ G + +HGR++EQ Y + Sbjct: 419 QIVRGMNQVL--DVPLTVKIRTGVQERVNLAHRLLPELRDWGVALVTLHGRSREQRY-TK 475 Query: 180 HIDWQAIGDIRQRLN-IPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK 238 DWQ I + Q + +P+ NG+I ++ A + M +G +MI RGAL P L +K Sbjct: 476 LADWQYIEECVQAASPMPLFGNGDILSFEDANRAMQ-TGVTGIMIARGALLKPWLFTEIK 534 Query: 239 YN-EPRMPWPEVVALLQKYTR--LEKQGDT--GLYHVAR-IKQWLSYLRKEYDEATELFQ 292 + E + +L+ +T LE G G+ R + +WLS+L + Y L + Sbjct: 535 EQRHWDISSSERLDILRDFTNYGLEHWGSDTQGVEKTRRFLLEWLSFLCR-YVPVGLLER 593 Query: 293 HVRVLNNSPDI 303 + +N P Sbjct: 594 LPQRINERPPY 604 >UniRef50_Q7X346 Putative uncharacterized protein n=1 Tax=uncultured Acidobacteria bacterium RepID=Q7X346_9BACT Length = 355 Score = 247 bits (630), Expect = 5e-64, Method: Composition-based stats. Identities = 85/278 (30%), Positives = 127/278 (45%), Gaps = 13/278 (4%) Query: 5 LAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGTL 64 +APM + R L E+ + ++E L ++ + E R P Sbjct: 1 MAPMTKGSNLPYRRLCVELG-ARITVSEMT------LARRLKQKRNSEFALIRRFPGEPC 53 Query: 65 VRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAK 124 VQL G P A AA G+ VD+N GCP G GA++ + P+ + + + Sbjct: 54 FGVQLAGNKPDETAWAAALVESRGADFVDINFGCPIDYFTRKGLGASIGRQPQRMRRLVE 113 Query: 125 AMREAVPAHLPVSVKVRLGW-DSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHIDW 183 A++ +V ++PV+ K+RLGW D + A A GA L VHGRT+ YR DW Sbjct: 114 AIKGSV-TNIPVTAKIRLGWNDDDRNYLQQAQAAVDGGAAALFVHGRTRNARYR-FAADW 171 Query: 184 QAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNEPR 243 AI I + +PVI NG++ SGC AVM+ R AL P + R Sbjct: 172 DAIARIVAAVPVPVIGNGDLLFPHEIAAARERSGCAAVMVARAALIKPWIFREAVDGYWD 231 Query: 244 MPWPEVVALLQKYTRL--EKQGDTGLYHVARIKQWLSY 279 + E V L ++Y L E GD + +ARI+ +L++ Sbjct: 232 ITAEERVGLYRRYVTLAREHWGDDE-HGLARIRTFLNW 268 >UniRef50_B5X496 tRNA-dihydrouridine synthase 3-like n=3 Tax=Eukaryota RepID=B5X496_SALSA Length = 654 Score = 246 bits (628), Expect = 1e-63, Method: Composition-based stats. Identities = 74/321 (23%), Positives = 132/321 (41%), Gaps = 24/321 (7%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 ++ LAP+ + R + D+ E + L E R S Sbjct: 310 KLYLAPLTTCGNLPFRRICKRFG-ADITCGEMAMCTNLLQGQ------SSEWALLKRHES 362 Query: 62 GTLVRVQLLGQFPQWLAENAARAV-ELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 L VQ+ G FP + A ++ VD+N GCP V GGG L+ Sbjct: 363 EDLFGVQVEGCFPDTMTRCAELLNNKIDVDFVDINSGCPIDLVYKKGGGCGLMTRTNKFE 422 Query: 121 QGAKAMREAVPAHLPVSVKVRLGW-DSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAE 179 Q + M + +P++VK+R G + ++ +++ G + + +HGR++EQ Y + Sbjct: 423 QIIRGMNSVL--DVPLTVKIRTGVQEKANIAHKLIPEMKKWGVSMITLHGRSREQRY-TK 479 Query: 180 HIDWQAIGDIRQ-RLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK 238 DW I Q IP+ NG+I + A + + +M+ RGAL P + +K Sbjct: 480 SADWDYINTCSQLASPIPLFGNGDILSYYDAMKARE-TDVSGIMLARGALIKPWVFTEIK 538 Query: 239 Y-NEPRMPWPEVVALLQKYTR--LEKQG-DTGLYHVAR--IKQWLSYLRKEYDEATELFQ 292 + + E + +L+ +T LE G DT R + +WLS++ + L + Sbjct: 539 ERRDWDISSSERLDVLRDFTHYGLEHWGSDTQGLEKTRNFLLEWLSFMCRYIP-VGLLER 597 Query: 293 HVRVLNNSPDI---ARAIQAI 310 + +N P ++++ Sbjct: 598 VPQKINERPPYYMGRDYLESL 618 >UniRef50_B8DIS9 Dihydrouridine synthase DuS n=2 Tax=Desulfovibrionales RepID=B8DIS9_DESVM Length = 383 Score = 245 bits (627), Expect = 1e-63, Method: Composition-based stats. Identities = 82/305 (26%), Positives = 126/305 (41%), Gaps = 14/305 (4%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 R+ LAPM G+ + RE++ + L T R + R Sbjct: 48 RLWLAPMAGLGHAAFREVVEDYGGCGLLFTGMCNARAVP-----TERPEKSEAFSWRAGE 102 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + QL G P+ +AE A R G +GVDLN GC + G GA LL+DPE + Sbjct: 103 PPRLVCQLFGAEPEHMAEGARRVQAEGFFGVDLNMGCSVSAIIKRGCGADLLRDPERAVR 162 Query: 122 GAKAMREAVPAHLPVSVKVRLGWD-SGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 A+R AV +PV VK R GW + ++A + AGA LV H R R + Sbjct: 163 MVAAVRRAV--DIPVFVKFRTGWSPDPQPAVDLARRFEDAGADCLVFHPRVAPDR-RTQP 219 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRV---- 236 IG ++ ++IPV+ NG+++ + + +GCD V +GR A+ P + Sbjct: 220 PRRAHIGLVKAAVSIPVMGNGDVFTPEDCANLLDDTGCDGVSLGRIAVARPWVFAAWTGM 279 Query: 237 VKYNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRV 296 V + R P P A L L ++ V ++L Y+ + L + Sbjct: 280 VDDDPDRNPAPWREAPLALLDALARRHGPA-RAVRMFGKFLVYITGNFTYGNGLRGRLLR 338 Query: 297 LNNSP 301 + Sbjct: 339 VTGRT 343 >UniRef50_Q6P1R4 tRNA-dihydrouridine synthase 1-like n=12 Tax=Euteleostomi RepID=DUS1L_HUMAN Length = 473 Score = 245 bits (627), Expect = 1e-63, Method: Composition-based stats. Identities = 76/313 (24%), Positives = 129/313 (41%), Gaps = 22/313 (7%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 R ++APM + R LL+ + LC T + + + + E P Sbjct: 18 RHVVAPMVDQSELAWR-LLSRRHGAQLCYTPMLHAQ-VFVRDANYRK---ENLYCEVCPE 72 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + VQ P+ + A A + +DLN GCP GA L + +L+ + Sbjct: 73 DRPLIVQFCANDPEVFVQAALLAQDY-CDAIDLNLGCPQMIAKRGHYGAFLQDEWDLLQR 131 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQ-GYRAEH 180 E + +PV+ K+R+ + +K A +++AG L VHGRTKEQ G + Sbjct: 132 MILLAHEKLS--VPVTCKIRV-FPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGA 188 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 W+ I +R+ + IPV ANG I Q ++C+ +G VM G L+ P L Sbjct: 189 ASWEHIKAVRKAVAIPVFANGNIQCLQDVERCLRDTGVQGVMSAEGNLHNPALF------ 242 Query: 241 EPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIK-QWLSYLRKEYDEATELFQHVRVLNN 299 P V L ++Y + ++ L +V + + + + EL + + + Sbjct: 243 --EGRSPAVWELAEEYLDIVREHPCPLSYVRAHLFKLWHHTLQVH---QELREELAKVKT 297 Query: 300 SPDIARAIQAIDI 312 IA Q + + Sbjct: 298 LEGIAAVSQELKL 310 >UniRef50_Q9VPM1 CG3645, isoform A n=9 Tax=Diptera RepID=Q9VPM1_DROME Length = 505 Score = 245 bits (626), Expect = 2e-63, Method: Composition-based stats. Identities = 71/298 (23%), Positives = 118/298 (39%), Gaps = 20/298 (6%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 R ++APM + R L +LC + K P Sbjct: 29 RYVVAPMVDQSELAWRMLCRRYG-AELCYSPMYHANLFATDPKYRKDAL------QTCPE 81 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + +Q G Q + + A A + VD+N GCP G+ L + EL+ + Sbjct: 82 DRPLIIQFCGNDAQQILDAALLAQD-HCDAVDINLGCPQAIAKRGHYGSFLQDEWELLTE 140 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQ-GYRAEH 180 + + +PV+ K+R+ ++ EK A ++ AG L VHGRT+EQ G Sbjct: 141 IVSTLHAKLA--VPVTCKIRI-FEDLEKTIRYAKMLEAAGCQLLTVHGRTREQKGPLTGV 197 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 +W I ++RQ + IP++ANG I +C+ +G D VM G L+ P + + V Sbjct: 198 ANWNYIKNVRQHIKIPMLANGNILALDDVHRCLTETGVDGVMSAEGNLHNPAIFKGV--- 254 Query: 241 EPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLN 298 P V + +Y L + + L + + +EL Q++ N Sbjct: 255 -----SPPVWQMAHEYLELVQLHPCPSSFIRGHLFKLFHHIMNIRQNSELRQYLATAN 307 >UniRef50_C4VA23 Putative uncharacterized protein n=1 Tax=Nosema ceranae BRL01 RepID=C4VA23_NOSCE Length = 327 Score = 245 bits (625), Expect = 2e-63, Method: Composition-based stats. Identities = 73/311 (23%), Positives = 130/311 (41%), Gaps = 19/311 (6%) Query: 4 LLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGT 63 +LAPM G + R L D+C TE V D + K+ + + Sbjct: 13 VLAPMVGNSELAWRILARRYG-ADICYTEMVN-CDTFIRSKI---NPLSNRWYTTNKIDR 67 Query: 64 LVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGA 123 + +Q+ G + + + E +D+N GCP + G+ L+ D + + Sbjct: 68 PLIIQICGNDVNKMLKVSLILQEY-CDAIDINLGCPQEIARKGNYGSFLMDDLLKVKEIV 126 Query: 124 KAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQG-YRAEHID 182 + + +PV+ K+R+ ++S EK E A ++QAG L VHGRT++Q Sbjct: 127 TVLSNNL--KVPVTCKIRI-FESIEKSVEYAKMIEQAGCKMLTVHGRTRDQRGLNTGLAS 183 Query: 183 WQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNEP 242 W I I+ LNIPVI+NG I + C+ + CD VM+ L P + +K + Sbjct: 184 WDHIRAIKASLNIPVISNGNIINNSDIDNCVEYTKCDGVMVAETHLYNPLIF--IKRHSK 241 Query: 243 RMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQW-LSYLRKEYDEATELFQHVRVLNNSP 301 +++ ++Y + + + Y + IK L+K + E +H+ + Sbjct: 242 TN-----ISIYKEYLNIFLE-NYNEYDIHTIKSHTFKLLKKFLKQYPEFSEHINLCKTLK 295 Query: 302 DIARAIQAIDI 312 D ++ Sbjct: 296 DYINLCDVLET 306 >UniRef50_P53759 tRNA-dihydrouridine synthase 1 n=19 Tax=Ascomycota RepID=DUS1_YEAST Length = 423 Score = 244 bits (624), Expect = 2e-63, Method: Composition-based stats. Identities = 77/311 (24%), Positives = 125/311 (40%), Gaps = 12/311 (3%) Query: 4 LLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGT 63 ++APM + R L L T + K L +S Sbjct: 32 IVAPMVDQSELAWRILSRRYG-ATLAYTPMLHAKLFATSKKYREDNWSSLDGSS---VDR 87 Query: 64 LVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGA 123 + VQ P++L AA+ VE VDLN GCP G+ L+++ +LI+ Sbjct: 88 PLVVQFCANDPEYLL-AAAKLVEDKCDAVDLNLGCPQGIAKKGHYGSFLMEEWDLIHNLI 146 Query: 124 KAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQ-GYRAEHID 182 + + + +PV+ K+R+ +D EK A V AGA L VHGR +EQ G + + Sbjct: 147 NTLHKNL--KVPVTAKIRI-FDDCEKSLNYAKMVLDAGAQFLTVHGRVREQKGQKTGLAN 203 Query: 183 WQAIGDIRQRL--NIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 W+ I +R L ANG I + +CM G DAVM G L P + V + Sbjct: 204 WETIKYLRDNLPKETVFFANGNILYPEDISRCMEHIGADAVMSAEGNLYNPGVFNVGQTK 263 Query: 241 EPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIK-QWLSYLRKEYDEATELFQHVRVLNN 299 +P V ++++Y ++ K+ +K + LR T++ + +N Sbjct: 264 NKEKIFPRVDKIIREYFQIVKECQESKASKTAMKSHFFKILRPFLPHHTDIRSTLATMNA 323 Query: 300 SPDIARAIQAI 310 + + Sbjct: 324 KATWEEWEEQV 334 >UniRef50_Q91XI1 tRNA-dihydrouridine synthase 3-like n=12 Tax=Chordata RepID=DUS3L_MOUSE Length = 637 Score = 244 bits (624), Expect = 2e-63, Method: Composition-based stats. Identities = 75/311 (24%), Positives = 125/311 (40%), Gaps = 21/311 (6%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 ++ LAP+ + R + D+ E + L E R P Sbjct: 293 KLYLAPLTTCGNLPFRRICKRFG-ADVTCGEMAVCTNLLQGQ------MSEWALLKRHPC 345 Query: 62 GTLVRVQLLGQFPQWLAENAARAVE-LGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 + VQL G FP + + A + VD+N GCP V GGG L+ Sbjct: 346 EDIFGVQLEGAFPDTMTKCAELLNRTIDVDFVDINVGCPIDLVYKKGGGCALMNRSAKFQ 405 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSG-EKKFEIADAVQQAGATELVVHGRTKEQGYRAE 179 Q + + + +P++VK+R G + ++ G + +HGR++EQ Y Sbjct: 406 QIVRGVNGVL--DVPLTVKMRTGVQERVSLAHRLLPELRDWGVALVTLHGRSREQRY-TR 462 Query: 180 HIDWQAIGDIRQ-RLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK 238 DW I + +P+ NG+I ++ A C +G +M+ RGAL P L +K Sbjct: 463 LADWPYIEQCAKVASPMPLFGNGDILSFEDA-NCAMQTGVAGIMVARGALLKPWLFTEIK 521 Query: 239 YN-EPRMPWPEVVALLQKYTR--LEKQGDT--GLYHVAR-IKQWLSYLRKEYDEATELFQ 292 + E + +L+ +T LE G G+ R + +WLS+L + Y L + Sbjct: 522 EQRHWDISSSERLDILRDFTHYGLEHWGSDTQGVERTRRFLLEWLSFLCR-YVPVGLLER 580 Query: 293 HVRVLNNSPDI 303 + +N P Sbjct: 581 PPQRINERPPY 591 >UniRef50_A8NZY7 tRNA-dihydrouridine synthase 3 n=2 Tax=Agaricales RepID=DUS3_COPC7 Length = 676 Score = 243 bits (622), Expect = 4e-63, Method: Composition-based stats. Identities = 75/305 (24%), Positives = 125/305 (40%), Gaps = 31/305 (10%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 + LAP+ V + R + ++ D+ E L K E R PS Sbjct: 312 KTYLAPLTTVGNLPFRRMCVKLG-ADITCGEMGLATSFLAGSK------EEWSLVRRHPS 364 Query: 62 GTLVRVQLLGQFPQWLAENAARAVEL---GSWGVDLNCGCPSKTVNGSGGGATLLKDPEL 118 + +Q+ G P L A + G VDLNCGCP V +G G+ LL + Sbjct: 365 EKIFGIQVAGNKPHTLVPTAEVIAKEFPTGVDFVDLNCGCPIDLVFKAGSGSALLDNAGK 424 Query: 119 IYQGAKAMREAVPAHLPVSVKVRLGWDSGEKK-FEIADAV-QQAGATELVVHGRTKEQGY 176 + + + M A+ +P++VK+R G G ++ + + A+ + +HGRT++Q Y Sbjct: 425 LGKIIQGMNRAL-GEIPLTVKIRTGVKEGRNNAHKLMPRISAEWSASAITLHGRTRQQRY 483 Query: 177 RAEHIDWQAIGDIRQRLN----------IPVIANGEIWDWQSAQQCMAISGCDAVMIGRG 226 + DW I + + +P+ G+ + Q + + G D VMIGRG Sbjct: 484 -TKLADWDYIKECVAAVRAREADEDLPPVPIFGGGDCFSSQDYWEKINNYGVDGVMIGRG 542 Query: 227 ALNIPNLSRVVKY-NEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYD 285 AL P + +K E + E + L++ Y + GL H ++ R+ Sbjct: 543 ALIKPWIFTEIKERREWDISATERLQLIRDYV------EYGLNHFGSDTAGVNTTRRYLC 596 Query: 286 EATEL 290 EA Sbjct: 597 EALSF 601 >UniRef50_A7HK00 Dihydrouridine synthase DuS n=8 Tax=Thermotogaceae RepID=A7HK00_FERNB Length = 322 Score = 243 bits (622), Expect = 4e-63, Method: Composition-based stats. Identities = 78/311 (25%), Positives = 127/311 (40%), Gaps = 22/311 (7%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 + LAPM GV D R+L + Y TE + ++ VK+ P R Sbjct: 11 IGLAPMAGVTDYPFRKLCLQHGAY-FAFTEMISAKSVIINVKINEIYFPRQDEKDR---- 65 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 V VQL G L+E AA E G W VDLN GCP V G G+ LLKD + Sbjct: 66 --VGVQLFGSDYAELSEAAAIVQEKGLW-VDLNAGCPVSKVIKKGAGSALLKDLGEFRKV 122 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHID 182 +AMR + +VK R+GW+ E +I + + + + VHGRT +Q Y + Sbjct: 123 VRAMRSVLKR---FTVKTRIGWEKDE-FEKIYNILLEENVDAVFVHGRTAKQMYSGK-AT 177 Query: 183 WQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNEP 242 W I +P+ +G+I+ + + M SG V++ RG++ P + + Sbjct: 178 W----KIYNPGFVPLYISGDIYTKEDIKNAMEQSGATGVIVARGSIGNPWIFSEIGEPNC 233 Query: 243 RMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNNSPD 302 ++ L+ K + +++++ K A + V + + Sbjct: 234 EQRLCTILKHLEYLYDEYKDYGAVV-----FRKFVAGYTKNMLGARDFRDKVMKIRKLEE 288 Query: 303 IARAIQAIDIE 313 ++ Q E Sbjct: 289 LSSEFQKFFYE 299 >UniRef50_B8HFM3 TIM-barrel protein, nifR3 family n=4 Tax=Actinomycetales RepID=B8HFM3_ARTCA Length = 392 Score = 243 bits (621), Expect = 5e-63, Method: Composition-based stats. Identities = 84/323 (26%), Positives = 142/323 (43%), Gaps = 21/323 (6%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 V+LAPM G+ +S R L E + + E V + R L+ S Sbjct: 28 VILAPMAGITNSAFRRLCREYGG-GMYVAEMVTSRALV------ERTPESLRIISHDDDE 80 Query: 63 TLVRVQLLGQFPQWLAENAARAVELG-SWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + VQL G + VE + +DLN GCP V GGG+ L +L Sbjct: 81 KVRSVQLYGVDAGTVGAAVRMLVEEDRADHIDLNFGCPVPKVTRRGGGSALPWKIDLFTA 140 Query: 122 GAK-AMREAVPAHLPVSVKVRLGWDSGEKKF-EIADAVQQAGATELVVHGRTKEQGYRAE 179 + A+REA ++P+++K+R G D + + + +G + +HGRT Q Y + Sbjct: 141 IVQTAVREASKGNIPLTIKMRKGIDDDHLTYLDAGRIARDSGVAAVALHGRTAAQFYSGQ 200 Query: 180 HIDWQAIGDIRQRL-NIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK 238 DW AI +R+ L +IPV+ NG+IW + A + + +G D V++GRG P L ++ Sbjct: 201 -ADWSAIARLREALPDIPVLGNGDIWSAEDAVRMVRETGVDGVVVGRGCQGRPWLFGDLQ 259 Query: 239 YNEPRMPWPEVVALLQ------KYTRL--EKQGDTGLYHVARIKQWLSYLRKEYDEATEL 290 L Q ++ L E GD G + I++ +++ K Y EL Sbjct: 260 AAFEGSDVRHRPNLRQVAEGVYRHAELMVETFGDEGK-ALREIRKHIAWYFKGYVVGGEL 318 Query: 291 FQHVRVLNNSPDIARAIQAIDIE 313 + ++ + + + +D++ Sbjct: 319 RTRLALVTSLEVLRDTLAELDLD 341 >UniRef50_Q3MB47 Dihydrouridine synthase, DuS n=6 Tax=Bacteria RepID=Q3MB47_ANAVT Length = 378 Score = 243 bits (621), Expect = 5e-63, Method: Composition-based stats. Identities = 79/307 (25%), Positives = 135/307 (43%), Gaps = 16/307 (5%) Query: 5 LAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGTL 64 LAPM+ V + +++ D TE+ RV D + L + +G Sbjct: 21 LAPMQDVTNLWFMKVIAHYGSPDYFFTEYFRVNDTSRLNRGI------LAAITENDTGRP 74 Query: 65 VRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAK 124 V Q++G+ L A GVDLN GCP+ + G LL P + Q Sbjct: 75 VFAQMIGESIPDLVRTAKELCHYDIAGVDLNMGCPAPRIYRKNVGGGLLLSPGKVEQILA 134 Query: 125 AMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHIDWQ 184 +R+AV P++VK+R+G+++ + +EI D V + L +HGRT + Y + + Sbjct: 135 ELRQAVS-DRPLTVKMRVGFENTDTFYEILDIVNRHNIDLLSLHGRTVKDMYHG-AVKYD 192 Query: 185 AIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK---YNE 241 I + +R++ PV+ANG I +A + + +G VM+GR A+ P L ++ E Sbjct: 193 LIAEAVKRVDCPVLANGNIHSATTALEVLERTGAAGVMVGRWAIGNPWLFNQIRQALRGE 252 Query: 242 PRMPWPEVVALLQKYTRLEKQG----DTGLYHVARIKQWLSYLRKEYDEATELFQHVRVL 297 P P P +V + RL + V +K +L+Y+ D + + +R Sbjct: 253 PITPVP-LVEVRNYIDRLWQTPTAATMPERSRVGYLKMFLNYIALSVDAEGQFLRLMRRT 311 Query: 298 NNSPDIA 304 ++ Sbjct: 312 QTEVEMF 318 >UniRef50_C1E1T8 Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1E1T8_9CHLO Length = 662 Score = 243 bits (620), Expect = 8e-63, Method: Composition-based stats. Identities = 72/314 (22%), Positives = 126/314 (40%), Gaps = 22/314 (7%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 ++ LAP+ + R + D+ E V + L E R PS Sbjct: 306 KLYLAPLTTTGNLPFRRICKRYG-VDITCGEMAMVTNLLQGQ------PAEWALLRRHPS 358 Query: 62 GTLVRVQLLGQFPQWLAENAARAVEL-----GSWGVDLNCGCPSKTVNGSGGGATLLKDP 116 + Q+ G + ++ + G +D+N GCP V G G+ LL+ P Sbjct: 359 EDIFGAQVCGGYSDSMSRCMQLLEDEVVSKGGLDFIDINMGCPIDLVCNKGAGSMLLEKP 418 Query: 117 ELIYQGAKAMREAVPAHLPVSVKVRLGW-DSGEKKFEIADAVQQAGATELVVHGRTKEQG 175 + Q +A A P+++K R+G+ D+ EI + G + +HGR+++Q Sbjct: 419 ARMEQLVRA--SAPLLSCPLTLKTRMGYFDNKRVAHEIIPKMVDWGLAGMTLHGRSRQQR 476 Query: 176 YRAEHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSR 235 Y DW I + I +I NG+++ + + + G MI RGAL P + Sbjct: 477 YS-RLADWDYINQCARASPIQLIGNGDVFSYHDYVKNVEGQGVATCMIARGALIKPWIFT 535 Query: 236 VVKY-NEPRMPWPEVVALLQKYTR--LEKQGDT--GLYHVAR-IKQWLSYLRKEYDEATE 289 +K + + E + +L+ Y LE G G+ + R + +WLS+L + Sbjct: 536 EIKERRDWDISATERLDMLKDYAAFGLEHWGADARGVANTRRFLLEWLSFLHRYVPVGLL 595 Query: 290 LFQHVRVLNNSPDI 303 V + P+ Sbjct: 596 ERMPVGIHQRPPNY 609 >UniRef50_UPI00017B0A55 UPI00017B0A55 related cluster n=1 Tax=Tetraodon nigroviridis RepID=UPI00017B0A55 Length = 669 Score = 242 bits (619), Expect = 9e-63, Method: Composition-based stats. Identities = 72/321 (22%), Positives = 128/321 (39%), Gaps = 25/321 (7%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 ++ L P+ + R + D+ E + L + E R S Sbjct: 326 KLYL-PLTTCGNLPFRRVCKRFG-ADITCGEMAMCTNLLQGQQS------EWALLKRHES 377 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELG-SWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 + VQ+ G FP + A VD+N GCP V GGG L+ Sbjct: 378 EDVFGVQIEGCFPDTMTRCAELINNNTEVDFVDINSGCPIDLVFKKGGGCGLMTRTRKFE 437 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEK-KFEIADAVQQAGATELVVHGRTKEQGYRAE 179 + K M + +P++VK+R G ++ +++ G + + +HGR++EQ Y + Sbjct: 438 EIVKGMNYVL--DVPLTVKIRTGVQEKTNIAHKLIPEMKKWGVSMITLHGRSREQRY-TK 494 Query: 180 HIDWQAIGDI-RQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK 238 DW I + +P+ NG+I ++ A +G +MI RGAL P + +K Sbjct: 495 LADWDYISTCSKLASPVPLFGNGDILSYEDAM-MAKETGVSGIMIARGALIKPWIFTEIK 553 Query: 239 YNEPRMPWP-EVVALLQKYTR--LEKQG-DTGLYHVAR--IKQWLSYLRKEYDEATELFQ 292 E + +L+ +T LE G DT R + +WLS++ + L + Sbjct: 554 EKRHWDISSGERLDILRDFTNFGLEHWGSDTRGVEKTRSFMLEWLSFMCRYIP-VGLLER 612 Query: 293 HVRVLNNSPDI---ARAIQAI 310 + +N P ++++ Sbjct: 613 VPQKINERPPYYLGRDYLESL 633 >UniRef50_A4EC62 Putative uncharacterized protein n=3 Tax=Collinsella RepID=A4EC62_9ACTN Length = 347 Score = 242 bits (619), Expect = 1e-62, Method: Composition-based stats. Identities = 77/321 (23%), Positives = 130/321 (40%), Gaps = 23/321 (7%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 L+APM GV D R + +L +E V V R+ Sbjct: 19 FLMAPMAGVTDPAYRIMCRRRG-ANLAYSEMVSVAGLAYASNKTWRLVLPAD------EE 71 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSW---GVDLNCGCPSKTVNGSGGGATLLKDPELI 119 + VQL G P+ A A E +D+N CP++ V G G+ L++ P+L Sbjct: 72 QQICVQLFGSKPEQFASAVAAVEERVGDRLSLIDINMACPARKVVTKGEGSALMRTPDLA 131 Query: 120 YQGAKAMREAVPAHLPVSVKVRLG-WDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRA 178 + +A A AH+PV+VK+R G + A ++ AGA + VHGR Q Y Sbjct: 132 EKIVEAAVGA--AHVPVTVKIRKGFYAEDRNAATFAQMLEGAGAAAVAVHGRCATQLYTG 189 Query: 179 EHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK 238 + DW + ++ + IPVI +G+++ + A + + SG AV I RG P + + Sbjct: 190 Q-ADWSVVDEVADAVEIPVIGSGDVFSAEDAAEHLQGSGASAVFIARGIYGNPWVFGDAR 248 Query: 239 YNE------PRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQ 292 P E + L+++ L + ++R + + S+ K A Sbjct: 249 ALALDGTPVPSRSSVERLEALREHLTLTHELLP---LMSRARTYASWYLKGMPHAAAWRA 305 Query: 293 HVRVLNNSPDIARAIQAIDIE 313 V + + + I+ + Sbjct: 306 QVVRCSTYEEFMALVDDIERD 326 >UniRef50_Q010A0 tRNA-dihydrouridine synthase (ISS) n=2 Tax=Mamiellales RepID=Q010A0_OSTTA Length = 639 Score = 242 bits (618), Expect = 1e-62, Method: Composition-based stats. Identities = 71/297 (23%), Positives = 128/297 (43%), Gaps = 23/297 (7%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 ++ +AP+ V + R + T++ D+ ++E + L + E R P Sbjct: 270 KIYVAPLTTVGNLPFRRICTDLG-ADITVSEMAMASNLLKGDRK------EWALVRRHPI 322 Query: 62 GTLVRVQLLGQFPQWLAENAARA-VELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 +Q+ G +P + A E+ +D+N GCP V G G +L++D + + Sbjct: 323 EKCFGIQICGGYPDLMTRCAELLDNEVHCDFIDVNMGCPIDGVCAKGAGGSLMRDTDRLK 382 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEK---KFEIADAVQQAGATELVVHGRTKEQGYR 177 + ++M + PV++K+R+G+ +I + GA +HGRT+EQ Y Sbjct: 383 RVVRSMTSV--SSTPVTIKLRMGYFDDPSRYVAHDIISKAKSWGAYAATLHGRTREQRYS 440 Query: 178 AEHIDWQAIGDIRQRL---NIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLS 234 DW I N+P+I NG+++ +Q + +A MIGRGA+ P L Sbjct: 441 -RLADWSYIHRCADASALNNLPLIGNGDVYTYQDWNEQIANEKISTCMIGRGAIIKPWLM 499 Query: 235 RVVKYN-EPRMPWPEVVALLQKYTR--LEKQG--DTGLYHVAR-IKQWLSYLRKEYD 285 +K + E + L + + LE G G+ R + +W+SY + Sbjct: 500 TEIKEQRHWDISANERLDLFKDFVHYGLEHWGSDSVGVEKTRRYLLEWMSYTHRYVP 556 >UniRef50_B1ZZ77 Dihydrouridine synthase DuS n=2 Tax=Opitutaceae RepID=B1ZZ77_OPITP Length = 384 Score = 242 bits (618), Expect = 1e-62, Method: Composition-based stats. Identities = 80/328 (24%), Positives = 132/328 (40%), Gaps = 35/328 (10%) Query: 5 LAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGTL 64 LAPM+ V D ++ D TEF RV Q K R + +G Sbjct: 21 LAPMQDVTDLTFMRVIAHYGAPDYFFTEFFRVHSQSRLEKHIVRCLDDNT------TGRP 74 Query: 65 VRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAK 124 + Q++G+ + L A + G+DLN GCP+ V G LL+D + + Sbjct: 75 IFAQVIGEDLEQLVRTARELQQHPIAGIDLNLGCPAPKVYKKNVGGGLLRDLAHVDRILG 134 Query: 125 AMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHIDWQ 184 A+R A P L +VK+R+G+D + D V L VHGRT ++ YR+ + + Sbjct: 135 ALRAATPGGL-FTVKMRIGFDDTTPFEPMLDLVNAHRVDLLSVHGRTVKEMYRSR-VHYD 192 Query: 185 AIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNEPRM 244 I QR+ PV+ANG + A + +G VMIGR A+ P + R + Sbjct: 193 FIARAVQRVRCPVLANGNVTSAPRAVAILRETGAAGVMIGRHAIRNPWIFRQCRELFHPP 252 Query: 245 PWPE---------------------------VVALLQKYTRLEKQGDTGLYHVARIKQWL 277 P + + Y + G HV+++K++L Sbjct: 253 PALQSTTEPSSLPATAGATSPACFRPTFADVRDYIAHLYQATQTPGIPERIHVSKMKKYL 312 Query: 278 SYLRKEYDEATELFQHVRVLNNSPDIAR 305 +++ + D + +R + ++ R Sbjct: 313 NFVGQAVDPTGAFLREMRRAESEAELFR 340 >UniRef50_C1E909 tRNA-dihydrouridine synthase (Fragment) n=2 Tax=Micromonas RepID=C1E909_9CHLO Length = 353 Score = 242 bits (618), Expect = 1e-62, Method: Composition-based stats. Identities = 77/317 (24%), Positives = 132/317 (41%), Gaps = 23/317 (7%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 + +APM + REL + T + + + + + + Sbjct: 36 KFHVAPMVDQSELAFRELCRR-HGATCAYTPMIHARLFV------EDLKYRKEIFTTHIN 88 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + VQ P L + A+ V GVD+N GCP + GA L+ D E ++ Sbjct: 89 DRPLLVQFCANDPDMLLKAASI-VAPHCDGVDINFGCPQRIAKRGRYGAFLMDDWETVHN 147 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAE-H 180 + + + +PV+ K+R+ +D E + A V+ AGA + VHGRT+EQ A+ Sbjct: 148 LINKLDKHLS--VPVTAKIRV-YDDLETSLKYAKMVEAAGAQLIAVHGRTREQKRAADVR 204 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 +W I +I+++L +PV+ANG+I A++C+ +G D V+ L P+L Sbjct: 205 ANWAFIREIKKQLKVPVLANGDIRTLAEAEKCLEATGADGVLSAEPLLENPSLFSDPPLY 264 Query: 241 EPRMPWPEV-------VALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKE-YDEATELFQ 292 P P + LL +Y + + T L V K + + E T+L Sbjct: 265 SPSDPAHPLPVEGDVNCELLHEYLEITRTYQTPLRMV---KGHVHNMVGSWLKEFTDLRD 321 Query: 293 HVRVLNNSPDIARAIQA 309 + +S +QA Sbjct: 322 WLNKTPHSEMTVDKLQA 338 >UniRef50_D1AII6 Dihydrouridine synthase DuS n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AII6_SEBTE Length = 309 Score = 242 bits (617), Expect = 2e-62, Method: Composition-based stats. Identities = 69/315 (21%), Positives = 141/315 (44%), Gaps = 18/315 (5%) Query: 1 MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTP 60 M+++ APM G+ D R++L E + D+ TE V V R E+ + Sbjct: 1 MQIITAPMAGITDYSFRKILYEFS-PDIIFTEMVDVNALKYSN---QRTQDEILRKAGNE 56 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 VQ+ G + E +E G +D+N GCP K + +G G+ LL + + + Sbjct: 57 -----AVQIFGNKNEDFLEAVKLLIERGFDHIDINLGCPVKKIIRAGKGSALLLESDFVK 111 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 + +++ + +S+K+R G+ + ++ G ++ +HGRT+EQ Y + Sbjct: 112 ELLLKLKKEFRNDIKLSMKIRTGYKNFSDPEYYVKLAEEYGLFQICIHGRTQEQLYSGQ- 170 Query: 181 IDWQAIGDIRQRL-NIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK- 238 DW I ++Q+ N+ +I NG++ D ++ ++ + D +M+ RG L P L + K Sbjct: 171 ADWNIIKKMKQKHKNVKIIGNGDLTDLKTIKEKTDSAKPDGIMLARGLLGNPWLLKEAKD 230 Query: 239 ------YNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQ 292 ++E + E+ L K+ + + +++ + + KE++ ++ Sbjct: 231 YFKTGVFHESEVGREEIKNTLIKHINYCIEDKGEIRANLDMRKHIFWYLKEFENIEKIKN 290 Query: 293 HVRVLNNSPDIARAI 307 + D+ + I Sbjct: 291 DIIKTKTIKDVLKYI 305 >UniRef50_Q7PVV7 AGAP009171-PA (Fragment) n=3 Tax=Endopterygota RepID=Q7PVV7_ANOGA Length = 599 Score = 242 bits (617), Expect = 2e-62, Method: Composition-based stats. Identities = 83/325 (25%), Positives = 138/325 (42%), Gaps = 22/325 (6%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 ++ L+P+ V + R + E D+ E + + E R S Sbjct: 251 KLYLSPLTTVGNLPFRRICKEYG-VDITCGEMACAIPIINGA------IQEWALTKRHSS 303 Query: 62 GTLVRVQLLGQFPQWLAENAARAVEL-GSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 L VQL G P+ + A E +DLN GCP + GGG+ LL+ ++ Sbjct: 304 EDLFGVQLCGHNPKLVTYAAQIIAEKADVDFIDLNTGCPIDLIFNQGGGSALLRRQNVLK 363 Query: 121 QGAKAM-REAVPAHLPVSVKVRLG-WDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRA 178 ++ R +VK R+G +++ E+ + GA+ + +HGRTKEQ Y Sbjct: 364 VMVQSCSRLLADYGKEFTVKTRIGIYNNKLIAHEMVPKFEDWGASLITIHGRTKEQRY-T 422 Query: 179 EHIDWQAIGDIR-QRLNIPVIANGEIWDWQSAQQCMAI-SGCDAVMIGRGALNIPNLSRV 236 + DW+ + Q ++PV NG+I+ ++ + VM+GRGAL P + + Sbjct: 423 KRADWEYLQQCATQAQSVPVFGNGDIFGYEDYEHIRTKCPNIAGVMVGRGALIKPWVFQE 482 Query: 237 VKYNEPRMPWP-EVVALLQKYTR--LEKQG-DTGLYHVAR--IKQWLSYLRKEYDEATEL 290 +K + P E +L++Y LE G DT R + +W S+L + L Sbjct: 483 IKERKTLDPSSGERFEMLKRYVNYGLEHWGSDTKGVETTRRFLLEWQSFLYRYVPYGL-L 541 Query: 291 FQHVRVLNNSPDIARAIQAIDIEKL 315 + + +N PD R D+E L Sbjct: 542 ERPPQRINERPDAYRG--RDDLETL 564 >UniRef50_B0S913 tRNA-dihydrouridine synthase n=7 Tax=Leptospira RepID=B0S913_LEPBA Length = 337 Score = 242 bits (617), Expect = 2e-62, Method: Composition-based stats. Identities = 75/314 (23%), Positives = 134/314 (42%), Gaps = 15/314 (4%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 V L+PM G+ DS R++ TEFV L L Sbjct: 13 VALSPMAGISDSPYRQITKRFGSA-FSYTEFVSTEQLKLGN------AKSLDMFRFVEME 65 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 + Q+ G + + A E +DLN GC V+ +G GA LLK+ L + Sbjct: 66 RPIVFQIFGSDLDTVVNASEIAAEQKPDIIDLNMGCSVSKVSHNGSGAGLLKNIRLAGKM 125 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 + +R +LPV+ K+RLGWD+ E ++ +G + + VHGRTK Y Sbjct: 126 IEGIRNR--TNLPVTAKIRLGWDANSLNYLETLKVLEDSGVSAISVHGRTKAMAYTG-IA 182 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNE 241 DW AIG+I+ R N+P+ NG++ ++ A + G D V+IGR A+ P + K + Sbjct: 183 DWNAIGEIKSRANVPIYGNGDVQSYKEALEKKKTYGVDLVLIGRKAIGNPWVFG--KTPK 240 Query: 242 PRMPWPEVVALLQKYTRLE--KQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNN 299 PW ++ ++ ++ L + Y + ++ + + + + + + Sbjct: 241 QFFPWYQIKDVILEHLDLMLNFYPTSDDYALILFRKHFIKYIENIGFPEDTKRLLLSVAS 300 Query: 300 SPDIARAIQAIDIE 313 + ++ + ++ Sbjct: 301 VNEFKDTLEFVKMD 314 >UniRef50_Q5KC68 tRNA-dihydrouridine synthase 3 n=2 Tax=Filobasidiella neoformans RepID=DUS3_CRYNE Length = 725 Score = 241 bits (616), Expect = 2e-62, Method: Composition-based stats. Identities = 75/307 (24%), Positives = 121/307 (39%), Gaps = 31/307 (10%) Query: 4 LLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGT 63 LAP+ V + R L + + ++E + K E R S Sbjct: 361 YLAPLTTVGNLPFRRLCVDYG-ATITVSEMALAQPLVYGAK------EEWALVRRHESEK 413 Query: 64 LVRVQLLGQFPQWLAENAARAVEL-----GSWGVDLNCGCPSKTVNGSGGGATLLKDPEL 118 + VQ+ G FP + A G VD+N GCP V G G+ L+ P Sbjct: 414 MFGVQVAGGFPNRMVPAAEVIANTIGKGGGVDFVDVNMGCPIDLVFNQGAGSALMDSPGR 473 Query: 119 IYQGAKAMREAVPAHLPVSVKVRLGWDSGEKKFE--IADAVQQAGATELVVHGRTKEQGY 176 + + M A+ +P++VK R G G+ I V + GA L +HGR+++Q Y Sbjct: 474 LGKLLVGMNRAL-GDIPLTVKFRTGVAHGKPNAHKLIPRFVTEWGAGALTIHGRSRQQRY 532 Query: 177 RAEHIDWQAIGDIRQRLN----------IPVIANGEIWDWQSAQQCMAISGCDAVMIGRG 226 + DW+ I L +P+ NG+ + S + M SG D VM+ RG Sbjct: 533 S-KPADWEYIKTCVTALRESVADANLPPVPIFGNGDCFSAASYYEEMDRSGVDGVMVARG 591 Query: 227 ALNIPNLSRVVKYNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDE 286 AL P + +K ++ +++ ++K + GL H Q ++ R+ E Sbjct: 592 ALIKPWIFTEIKERREWD-----ISAVERLEGIKKFAEFGLSHWGSDTQGVNTTRRFLCE 646 Query: 287 ATELFQH 293 A Sbjct: 647 ALSFQHR 653 >UniRef50_A3VWV8 TRNA-dihydrouridine synthase, putative n=4 Tax=Rhodobacterales RepID=A3VWV8_9RHOB Length = 339 Score = 241 bits (616), Expect = 2e-62, Method: Composition-based stats. Identities = 98/309 (31%), Positives = 139/309 (44%), Gaps = 21/309 (6%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 V LAPM G+ D R ++ L ++E V +++ K R EL S Sbjct: 13 VFLAPMAGITDLPFRTVVAGFG-AGLVVSEMV-ASQEMVQAKPSARGKAELGFGIENTS- 69 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGAT----LLKDPEL 118 VQL G P W+AE A + G+ +D+N GCP+K V + G L++D + Sbjct: 70 ----VQLAGCDPHWMAEAARVVADHGARIIDINMGCPAKKVVSAAGAGASGSALMRDLDH 125 Query: 119 IYQGAKAMREAVPAHLPVSVKVRLGWDSG-EKKFEIADAVQQAGATELVVHGRTKEQGYR 177 + +A+ AV +PV++K RLGWD G E+A + AG + VHGRT+ Q YR Sbjct: 126 ALRLIEAVVGAV--DVPVTLKTRLGWDEGCSNAAELAKRAEAAGVAMITVHGRTRCQFYR 183 Query: 178 AEHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVV 237 DW I DI Q +NIPVIANG+I SA + MA S VMIGRGA P L V Sbjct: 184 G-AADWAMISDIAQAVNIPVIANGDIVGVASACRAMAQSNAAGVMIGRGARGRPWLLAEV 242 Query: 238 KYNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARI------KQWLSYLRKEYDEATELF 291 PEV + + L R ++ L + + E+ Sbjct: 243 AAAMGHGTAPEVPRGAVLADLVAGHYEAMLGFYGRDLGLRVARKHLGWYMEAAGSDPEMR 302 Query: 292 QHVRVLNNS 300 + V + + Sbjct: 303 RAVLTADQA 311 >UniRef50_A0EG06 Chromosome undetermined scaffold_94, whole genome shotgun sequence n=4 Tax=Intramacronucleata RepID=A0EG06_PARTE Length = 360 Score = 241 bits (616), Expect = 2e-62, Method: Composition-based stats. Identities = 77/312 (24%), Positives = 135/312 (43%), Gaps = 29/312 (9%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 + + APM + R L + L T + + K + + + P Sbjct: 19 KFICAPMVDQSELAFRMLTRKYG-TTLAYTPMLHSR-IMTESKSYKD-----EFFTTCPE 71 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + QL G PQ L + A + +D+N GCP GA LL+ E + Sbjct: 72 DRPLFAQLCGHDPQVLIKAALMIQDQ-CDAIDINLGCPQGIARKGLYGAYLLEKREQVLT 130 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYR-AEH 180 K +++ + ++PV+ K+R+ + ++ ++ +Q+AG + L VHGRTKEQ Sbjct: 131 IVKELKQNI--NVPVTCKIRM-FKDRKRTLDLTKDIQEAGCSILTVHGRTKEQNKDFVGQ 187 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSR-VVKY 239 DW I +I+Q L IPV ANG I+ W ++C+ + DAVM L P L +K Sbjct: 188 CDWTIIAEIKQILQIPVFANGGIYTWSDVERCLQETKVDAVMSSEALLENPALFSGEIK- 246 Query: 240 NEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVR-VLN 298 ++ L +Y + KQ + AR+ + ++L K ++F +R L Sbjct: 247 --------DLNDLALEYMQFAKQYN------ARLAEIKAHLFKLLYTGLQIFTDLRSKLG 292 Query: 299 NSPDIARAIQAI 310 ++ ++ + Sbjct: 293 SAKTYEEHLEVV 304 >UniRef50_UPI00006A5AE6 PREDICTED: similar to PP3111 protein n=1 Tax=Ciona intestinalis RepID=UPI00006A5AE6 Length = 474 Score = 241 bits (615), Expect = 3e-62, Method: Composition-based stats. Identities = 77/308 (25%), Positives = 122/308 (39%), Gaps = 22/308 (7%) Query: 4 LLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGT 63 L+APM + R L + +LC T + L + + P Sbjct: 22 LVAPMVDQSELAWRMLSRKYG-AELCYTPMLHASVFL------RDPQYRIDGLASCPEDR 74 Query: 64 LVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGA 123 + VQ P L ++A A + VD+N GCP GA L ++ EL+ + Sbjct: 75 PLIVQFCANDPDILTKSALLAQD-HCDAVDINLGCPQTIAKRGNYGAFLGENWELVTKLI 133 Query: 124 KAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQ-GYRAEHID 182 KA E + +PV+ K+R+ + EK + A +++AG L VHGRTKE G Sbjct: 134 KACHEKLS--VPVTCKIRI-FTDVEKTVQYAKMIERAGCQLLTVHGRTKEMKGPMTGLAS 190 Query: 183 WQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNEP 242 W+ I ++ + IPV ANG I +C+ +G D VMI G L+ P L + Sbjct: 191 WEHIKAVKDAVKIPVFANGNIQYKADVDRCINQTGVDGVMIAEGNLHDPCLF----VGKK 246 Query: 243 RMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNNSPD 302 + W + LQ + HV +I T + + D Sbjct: 247 TIIWEIALEYLQCAVKYPCPASYARGHVFKICHH------GLQRHTRARDLLASSKDIQD 300 Query: 303 IARAIQAI 310 + A++ + Sbjct: 301 MKTAVEVL 308 >UniRef50_A8F480 Dihydrouridine synthase DuS n=1 Tax=Thermotoga lettingae TMO RepID=A8F480_THELT Length = 305 Score = 241 bits (615), Expect = 3e-62, Method: Composition-based stats. Identities = 75/305 (24%), Positives = 138/305 (45%), Gaps = 21/305 (6%) Query: 8 MEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGTLVRV 67 M G+ + R++ T TE + + K R+ P+ V V Sbjct: 1 MAGITNRAFRKICT-FWGAQFSFTEMISAESVVRNFKTVQRMLPK--------DEPNVAV 51 Query: 68 QLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMR 127 QL G P+ LA+ AA+ VE + +D+N CP K V G LL D E + + +++ Sbjct: 52 QLFGNDPKTLAQ-AAKIVEPYAAWIDINAACPVKKVIKKNSGGALLNDLERLEKIIGSVK 110 Query: 128 EAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHIDWQAIG 187 +V PV+VK+R+G++ +I + +AGA + VHGRT Q Y + A Sbjct: 111 SSV--QKPVTVKIRIGFEKN-ILDQIVHSCIKAGADGIEVHGRTVVQKYSGK-----AFW 162 Query: 188 DIR-QRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNEPRMPW 246 D++ + I +G+I++ + + + +SG ++ +I RGAL P + + Sbjct: 163 DLKLSQYGISTAVSGDIFEAEDFHKALEMSGANSALIARGALRKPWIFAQITQKRTPKIT 222 Query: 247 PEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNNSPDIARA 306 E+ K+ +++ + D G + +++Q+++ A E + LN D+ +A Sbjct: 223 -EIKETFTKHLKMQIE-DEGERSIYKMRQFVAGYTHGMRGAREFREKFMKLNKPEDMEKA 280 Query: 307 IQAID 311 I+ Sbjct: 281 IEEFF 285 >UniRef50_Q17M24 tRNA-dihydrouridine synthase n=2 Tax=Diptera RepID=Q17M24_AEDAE Length = 578 Score = 240 bits (614), Expect = 3e-62, Method: Composition-based stats. Identities = 82/325 (25%), Positives = 140/325 (43%), Gaps = 22/325 (6%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 ++ L+P+ V + R + E D+ E V + + + E R PS Sbjct: 230 KLYLSPLTTVGNLPFRRICKEYG-VDITCGEM------ACSVPIINGMMQEWALTKRHPS 282 Query: 62 GTLVRVQLLGQFPQWLAENAARAVEL-GSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 L VQ+ G + ++ E VDLN GCP + GGG+ LL+ ++ Sbjct: 283 EDLFGVQICGHNQKLVSYATQVIAEHADVDFVDLNLGCPIDLIFNQGGGSALLRRRNILE 342 Query: 121 QGAKAMREAV-PAHLPVSVKVRLG-WDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRA 178 ++ + +VK R+G + + E+ ++ GA+ + +HGRTKEQ Y Sbjct: 343 VMIQSCSRILADYDKEFTVKTRMGIYANKYVAHELVPKFEEWGASLVTIHGRTKEQRY-T 401 Query: 179 EHIDWQAIGDIR-QRLNIPVIANGEIWDWQSAQQCMAI-SGCDAVMIGRGALNIPNLSRV 236 + DW I Q +IP+ NG+I+ +Q VM+GRGAL P + + Sbjct: 402 KKADWDYIRQCAQQAKSIPIYGNGDIFCYQDYLDAKERAPELAGVMVGRGALIKPWVFQE 461 Query: 237 VKYNEPRMP-WPEVVALLQKYTR--LEKQG--DTGLYHVAR-IKQWLSYLRKEYDEATEL 290 +K + P E + +L++Y LE G G+ + R + +W S+L + L Sbjct: 462 IKEQKNLDPSSSERMDMLKRYVNYGLEHWGSDTKGVENTRRFLLEWQSFLYRYVPSGL-L 520 Query: 291 FQHVRVLNNSPDIARAIQAIDIEKL 315 + + +N P+ R D+E L Sbjct: 521 ERPPQKINQRPEAFRG--RDDLETL 543 >UniRef50_UPI000180C543 PREDICTED: similar to dihydrouridine synthase 1-like n=2 Tax=Eumetazoa RepID=UPI000180C543 Length = 626 Score = 240 bits (614), Expect = 4e-62, Method: Composition-based stats. Identities = 72/314 (22%), Positives = 132/314 (42%), Gaps = 26/314 (8%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 + ++APM + R LL+ + LC + + +++ +L + P Sbjct: 16 KFVVAPMVDQSELPWR-LLSRRHGAQLCFSPMYSANTFVHDHTYRNKVVQDLSSTEDHP- 73 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + VQ + E A++ VE GVDLN GCP GA L +D +LI + Sbjct: 74 ---LIVQFCSNSAENFLE-ASKLVEGLCEGVDLNLGCPQHIAKRGHFGAYLQEDWDLIIE 129 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQ-GYRAEH 180 ++ + + V+ K+R+ ++ +K + A ++ AG + VHGRT+EQ G Sbjct: 130 IISTTKQHI--GIGVTAKIRV-FNEIDKTVKYAQMLETAGCDIITVHGRTREQKGPNTGL 186 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 W I ++ ++IPV ANG I + +CM +G D VM+ G L P + + + Sbjct: 187 ASWDHIKAVKDNVDIPVFANGNIQYYCDIMRCMETTGVDGVMVAEGNLTNPMIFQDL--- 243 Query: 241 EPRMPWPEVVALLQKYTRLEKQG----DTGLYHVARIKQWLSYLRKEYDEATELFQHVRV 296 V ++++Y L Q + H+ RI + ++ + + Sbjct: 244 ---STPCNVYDVVEEYFALVAQYPCPLSSARSHMFRI------WARTLLIHKDMRERIGS 294 Query: 297 LNNSPDIARAIQAI 310 NN + + + Sbjct: 295 ANNIDMLKECNEVL 308 >UniRef50_C5F231 Putative uncharacterized protein n=2 Tax=Helicobacter RepID=C5F231_9HELI Length = 317 Score = 240 bits (613), Expect = 5e-62, Method: Composition-based stats. Identities = 89/308 (28%), Positives = 148/308 (48%), Gaps = 15/308 (4%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 ++LAP+ G D RE++ + D+ ++E + V K ++ ++P Sbjct: 11 LMLAPLAGYSDLPFREVVKKFG-ADITVSEMISVHALAFKNKKT------IKMIEKSPLE 63 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWG--VDLNCGCPSKTVNGSGGGATLLKDPELIY 120 +Q+ G + + E + +DLNCGCP+ V+ G G++LLKD + Sbjct: 64 NPFALQIAGNDFGIIQKAVEFLNEFKNEIQILDLNCGCPAPKVSSHGSGSSLLKDLNKLV 123 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 + + +RE +SVKVRLG+D EIA+A+ + +VVHGRTK GY+ + Sbjct: 124 KILQLLRET-SVFPYLSVKVRLGFDKKIP-LEIANALNDSPIDYVVVHGRTKSDGYKKDK 181 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 ID+ +I I+Q + P+IANGEI Q A++ ++G + VMIGR A+ P + +K N Sbjct: 182 IDYDSIRLIKQNIQHPLIANGEITSPQIAKKVQELTGAEGVMIGRAAIEKPWIFTQIKNN 241 Query: 241 -EPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNN 299 E + + VAL + +GD G ++ L K A++ V + N Sbjct: 242 LEESIELRKQVALEHFDRTISFRGDYGAIM---FRKNLHAYSKGLKGASDFRNKVNAITN 298 Query: 300 SPDIARAI 307 + I Sbjct: 299 PALMREEI 306 >UniRef50_A4RQU5 Predicted protein n=2 Tax=Ostreococcus RepID=A4RQU5_OSTLU Length = 608 Score = 240 bits (612), Expect = 6e-62, Method: Composition-based stats. Identities = 68/313 (21%), Positives = 128/313 (40%), Gaps = 19/313 (6%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 ++ LAP+ V + R + + D+ E L + + E R S Sbjct: 248 KLYLAPLTTVGNLPFRRVCKTLG-ADITCGEM------ALCTSLLQGLPSEWALLRRHKS 300 Query: 62 GTLVRVQLLGQFPQWLAENAARAVE-LGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 + VQ+ G +P + + + +D+N GCP +V G G+ +L+ P+ + Sbjct: 301 EDIFGVQICGGYPDSVTRCCQLLEDTIDVDFIDINMGCPIDSVCQKGYGSMMLEKPKKME 360 Query: 121 QGAKAMREAVPAHLPVSVKVRLGW-DSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAE 179 +A A+ ++ K R+ + D A V + GA + +HGRT+ Q YR+ Sbjct: 361 TVIRAASAAL-GKCSLTFKTRMAYTDKSRVAHTFAPKVAEWGAAAMTLHGRTRAQRYRS- 418 Query: 180 HIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY 239 DW+ ++ ++P+I NG+++ + + D M+ RGAL P L +K Sbjct: 419 VADWEYTKLTKESSSVPLIGNGDVYMQKDYYTHLEEHSVDTCMLARGALIKPWLFTEIKE 478 Query: 240 -NEPRMPWPEVVALLQKYTR--LEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRV 296 + + E +L+ + LE G + K L ++ Y + + + Sbjct: 479 RRDWDISSRERFDILKSFASFGLEHWGSDTRGVESTRKYLLEWMSFTYR-----YTPIGL 533 Query: 297 LNNSPDIARAIQA 309 L++S A Q Sbjct: 534 LDHSYGAAAMTQR 546 >UniRef50_C1ZGV0 tRNA-dihydrouridine synthase n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZGV0_PLALI Length = 322 Score = 240 bits (612), Expect = 7e-62, Method: Composition-based stats. Identities = 83/318 (26%), Positives = 133/318 (41%), Gaps = 17/318 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 + LAPME R + + L +E + D R ++ S T + Sbjct: 12 LTLAPMEEHTSLPFRLICKQQG-ASLVCSERIDAKDVA------ERDKRAIKLLSTTSAE 64 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 Q+ G + E A ELG VDLN CP + + G G G L+ P+ I + Sbjct: 65 RPAVGQISGNDAAQIGEAARVIEELGFSMVDLNFECPIRRLVGRGEGGALMGQPQRIAEL 124 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGEKK-FEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 A ++AV +PV+VK+R G +GE E A V+QAG +++H R+ EQ Y Sbjct: 125 VAAAKQAVS--IPVTVKLRTGPKAGEDTAVETAQRVEQAGGAAIILHARSVEQAYLGGP- 181 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK--- 238 DWQ + +++ ++IPV+ +G + Q A + SG D V IGRG L P + + + Sbjct: 182 DWQHVTRVKEAVSIPVLGSGGVRTPQDAISFLESSGADGVAIGRGCLGNPWIFQQARTLL 241 Query: 239 --YNEPRMPWP-EVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVR 295 E P P E +L E + + R+ + Y K + E + + Sbjct: 242 FGSREIIEPSPAERGKVLLALVEHEFEFYSAHLAQKRLARTACYFAKFLPDFAEFKKEIH 301 Query: 296 VLNNSPDIARAIQAIDIE 313 + N ++ Sbjct: 302 AIKNLAQFRTLVREWFRP 319 >UniRef50_O95620 tRNA-dihydrouridine synthase 4-like n=40 Tax=Metazoa RepID=DUS4L_HUMAN Length = 317 Score = 238 bits (608), Expect = 2e-61, Method: Composition-based stats. Identities = 68/245 (27%), Positives = 113/245 (46%), Gaps = 12/245 (4%) Query: 4 LLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGT 63 + APM R L+ + + DLC T + D + +K + Sbjct: 30 VCAPMVRYSKLAFRTLVRKYS-CDLCYTPMIVAADFVKSIKARD------SEFTTNQGDC 82 Query: 64 LVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGA 123 + VQ L +AAR V + G+D+NCGCP + G GA L+ PEL+ Sbjct: 83 PLIVQFAANDA-RLLSDAARIVCPYANGIDINCGCPQRWAMAEGYGACLINKPELVQDMV 141 Query: 124 KAMREAVP-AHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHID 182 K +R V VS+K+R+ D ++ ++ + G + + VHGRT E+ ++ + Sbjct: 142 KQVRNQVETPGFSVSIKIRI-HDDLKRTVDLCQKAEATGVSWITVHGRTAEERHQ--PVH 198 Query: 183 WQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNEP 242 + +I I++ ++IPVIANG+I + A+ I+G D VM+ RG L P + + Sbjct: 199 YDSIKIIKENMSIPVIANGDIRSLKEAENVWRITGTDGVMVARGLLANPAMFAGYEETPL 258 Query: 243 RMPWP 247 + W Sbjct: 259 KCIWD 263 >UniRef50_Q54ES7 tRNA-dihydrouridine synthase 4-like protein n=1 Tax=Dictyostelium discoideum RepID=Q54ES7_DICDI Length = 344 Score = 238 bits (608), Expect = 2e-61, Method: Composition-based stats. Identities = 72/308 (23%), Positives = 121/308 (39%), Gaps = 24/308 (7%) Query: 1 MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTP 60 M++ APM R L+ + D+ T + + + + Sbjct: 56 MKI-QAPMVRFSRLPFRMLVKKWG-CDITYTPMIMAAEFNRSE------AARDSDFTINK 107 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 + VQ + L A + + G+D+NCGCP + V G GA LL PE IY Sbjct: 108 LDEPLIVQFGVNNAEELVSAAEKVKDY-CQGIDINCGCPQRWVMKEGFGANLLLHPERIY 166 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 K + VP +P+S+K+R+ + E+A ++ G + + VHGRT Sbjct: 167 DMVKQINNRVP--IPISIKIRV-QSDLKDTIELAKRAERIGVSWITVHGRTSAMKSS-HP 222 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 +D+ AI ++ + +PV ANG+++ + + +G + VM RG L P L + Sbjct: 223 VDYDAIKLVKDNVTLPVFANGDVFTLSQSNEIREKTGVNGVMSARGLLTNPALFQGYD-K 281 Query: 241 EPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNNS 300 P + + + +Y G H + L Y+ EY E L+ Sbjct: 282 TPIECIKDFINIYSEY---------GGLHPVIFHRHLMYMLYEYHNKNE-KSEFNKLSTI 331 Query: 301 PDIARAIQ 308 I I Sbjct: 332 SGIMDYIN 339 >UniRef50_B2V534 Dihydrouridine synthase family protein n=29 Tax=Clostridiales RepID=B2V534_CLOBA Length = 321 Score = 237 bits (605), Expect = 4e-61, Method: Composition-based stats. Identities = 71/320 (22%), Positives = 128/320 (40%), Gaps = 18/320 (5%) Query: 1 MRVLLAPMEGVLDSLVRELLTEV-NDYDLCITEFV-RVVDQLLPVKVFHRICPELQNASR 58 M+ LAPMEG+ + R + ++ D T F+ + L K + PE Sbjct: 1 MKYYLAPMEGITGYIYRNTYEKFFHNIDKYFTPFIVTNKSRSLKSKELRDVLPE------ 54 Query: 59 TPSGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPEL 118 G + Q+L + + +LG V+LN GCP+ TV G+ L E Sbjct: 55 NNKGMSIVPQILTNDSEGFINTTRKLQQLGYNEVNLNLGCPAGTVVSKNRGSGFLAKREE 114 Query: 119 IYQGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRA 178 + + + + + +S+K R+G DS E+ +E+ + EL++H RT++ Y Sbjct: 115 LDIFLEEIFKI--DDMKISIKTRIGKDSPEEFYELIKIYNKYPLEELIIHPRTQKDFY-G 171 Query: 179 EHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMA-ISGCDAVMIGRGALNIPNLSRVV 237 + D N PV NG+I+ + +M+GRG L P L + Sbjct: 172 NKPNLDVFKDALSLSNNPVCYNGDIFTVADHNKFEETFPKVKTLMLGRGILANPGLMNEI 231 Query: 238 KYNE---PRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHV 294 K N+ + + KY L + + R+K+ Y+ + + + + + Sbjct: 232 KNNDFINKELLKDFHDEIFNKYIDL---FNEEKNAMFRMKELWGYMIYIFSDNKKYAKKI 288 Query: 295 RVLNNSPDIARAIQAIDIEK 314 R D A+ ++ E+ Sbjct: 289 RKAQKLSDYNEAVLSLFEEQ 308 >UniRef50_UPI0001792282 PREDICTED: similar to tRNA-dihydrouridine synthase n=1 Tax=Acyrthosiphon pisum RepID=UPI0001792282 Length = 578 Score = 237 bits (604), Expect = 6e-61, Method: Composition-based stats. Identities = 72/294 (24%), Positives = 130/294 (44%), Gaps = 20/294 (6%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 ++ LAP+ V + R + E D+ +E V L + E R + Sbjct: 232 KLYLAPLTTVGNLPFRRICKEFG-ADITCSEMV------LSSSLLQGHNQEWALTKRHET 284 Query: 62 GTLVRVQLLGQFPQWLAENAARAVEL-GSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 + +Q+ G P LA++A E +DLN GCP + G G+ LL + + Sbjct: 285 EDIFGIQVCGNNPYMLAKSAQVLQENVDMDFLDLNLGCPLDQIYKQGAGSGLLLRSKKLE 344 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEK-KFEIADAVQQAGATELVVHGRTKEQGYRAE 179 K+MR + +P++VK R G + + ++ + +G + + VHGR+++Q Y + Sbjct: 345 VCLKSMRTVL--DVPLTVKTRSGVNKDQNVAHDLIPMFKDSGVSLITVHGRSRDQRY-TK 401 Query: 180 HIDWQAIGDIRQ-RLNIPVIANGEIWDWQSAQQ-CMAISGCDAVMIGRGALNIPNLSRVV 237 DW + + + + V ++G+I ++ + MIGRGAL P + + + Sbjct: 402 MADWNYVNECAKLASPVQVFSSGDIMSYEDYVDSKLQFPDITGAMIGRGALIKPWIFKEL 461 Query: 238 KYN-EPRMPWPEVVALLQKYTR--LEKQG-DTGLYHVAR--IKQWLSYLRKEYD 285 K N + E + +L+KY + LE G DT R + +WLS+ + Sbjct: 462 KENCHWDISSNERLEILKKYVKYGLEHWGSDTRGVETTRKFLLEWLSFCYRYIP 515 >UniRef50_C5DS92 ZYRO0B14872p n=1 Tax=Zygosaccharomyces rouxii RepID=C5DS92_ZYGRO Length = 406 Score = 236 bits (603), Expect = 6e-61, Method: Composition-based stats. Identities = 78/314 (24%), Positives = 131/314 (41%), Gaps = 11/314 (3%) Query: 4 LLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGT 63 ++APM + R L + L T K + E+ S+ Sbjct: 22 IVAPMVDQSELAWRILSRKYG-ATLAYTPMFHAKLFATSPKYRKDMWCEMDGDSK--IDR 78 Query: 64 LVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGA 123 + VQ P++L + AAR V+ VDLN GCP G+ L+++ +L+++ Sbjct: 79 PLVVQFCANDPEYLLQ-AARLVQDKCDAVDLNLGCPQGIAKKGHYGSFLMEEWDLVHKLI 137 Query: 124 KAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQ-GYRAEHID 182 + + E + +PV+ K+R+ + EK + A V AGA L VHGR +EQ G ++ D Sbjct: 138 RNLHENL--DVPVTAKIRI-FPEKEKSLQYARTVLDAGAQFLTVHGRLREQKGQQSGLAD 194 Query: 183 WQAIGDIRQRL--NIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 W+ I +R L + +NG + +CM CDAVM G L P + Sbjct: 195 WETIKYLRDNLPPDTVFFSNGNLLYPNDISRCMDQINCDAVMSAEGNLYNPGIFNAEDSQ 254 Query: 241 EPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWL-SYLRKEYDEATELFQHVRVLNN 299 + +P V + ++Y + K + +K L LR T++ + +LN Sbjct: 255 DKEKVFPRVDVICREYFEIVKSYEFSHASRTAMKSHLFKILRPFLPNHTDIRSSLALLNA 314 Query: 300 SPDIARAIQAIDIE 313 + A+ I Sbjct: 315 KSSLDDYENAVVIP 328 >UniRef50_Q4DCG2 Putative uncharacterized protein n=2 Tax=Trypanosoma cruzi RepID=Q4DCG2_TRYCR Length = 529 Score = 236 bits (603), Expect = 6e-61, Method: Composition-based stats. Identities = 65/300 (21%), Positives = 123/300 (41%), Gaps = 30/300 (10%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 +++LAP+ V + R + D+ ++ V + K E R S Sbjct: 171 KLVLAPLTTVGNLPFRRVCKSYG-ADITVSSMSLVHNLNRLQKG------EWSLLRRHES 223 Query: 62 GTLVRVQLLGQFPQWLAENAARAVE---LGSWGVDLNCGCPSKTVNGSGGGATLLKDPE- 117 + +Q+ PQ A+ A+A+E +D+NCGCP + + +G G L + + Sbjct: 224 EDVFGLQIAVSQPQS-AQTWAKAIEASGYSYDFIDINCGCPVQMIMSAGCGCGLWERRDN 282 Query: 118 LIYQGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYR 177 + ++ + + + ++ G +S E + GA + +HGR + Q Y Sbjct: 283 RLRDIVSSLVQHQSKPVSIKCRIGAGANSSASLHEKIGDYEGWGADAVTIHGRFRAQRY- 341 Query: 178 AEHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMA-ISGCDAVMIGRGALNIPNLSRV 236 + +W+ I R ++PVI NG+I+ ++ + MIGRGAL P + Sbjct: 342 TKLANWEYIDSCAARTSLPVIGNGDIFSYEDIIDHRERYPHVSSYMIGRGALIKPWIFEE 401 Query: 237 VKYNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVAR-----------IKQWLSYLRKEYD 285 +K +PR + +++ L + GL H + +WLS+L + Sbjct: 402 IKQEQPRDISSQ-----ERFEMLRSFCNYGLSHWGSDERGVLTTRRFLCEWLSFLCRYVP 456 >UniRef50_UPI0001C3129C dihydrouridine synthase DuS n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C3129C Length = 333 Score = 236 bits (602), Expect = 8e-61, Method: Composition-based stats. Identities = 84/313 (26%), Positives = 140/313 (44%), Gaps = 16/313 (5%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVF-HRICPELQNASRTP 60 RV+LAP+ G+ + VR L + L ++E V + + + R Sbjct: 19 RVVLAPLAGIGNWFVR-LQAKRYGAGLAVSEMVSSHAIHYGNEKTCTELLRVHPDEWRAG 77 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 +G V +QL G P + AARA E G+ +DLN GCP V +G GA L+KDP+L Sbjct: 78 AGGPVSIQLFGNDPDIMRSAAARAAETGANLIDLNMGCPVPKVCKTGAGAALVKDPDLAV 137 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKK-FEIA-DAVQQAGATELVVHGRTKEQGYRA 178 + A+A A + LPV+VK+R G G++ E+A V AG L +H R Q + Sbjct: 138 EIARA--AAEGSGLPVTVKLRPGLRPGDRNGIELAYRLVADAGIAGLCIHPRHASQQHSG 195 Query: 179 EHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK 238 D++ + + L +PV+ +G + + ++ +G +AV++ RG+L P L V Sbjct: 196 RP-DYELAKRLVEELPVPVLISGGLRSAELVREVFEFTGAEAVLLARGSLGNPWLFEQVL 254 Query: 239 YNEPRMP-----WPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQH 293 + P EV +L + +G Y ++++ + E EL Sbjct: 255 GDRVGEPTREEILTEVDWILDRAVEHLGEGRAARY----LRKFYPWYVTRLGEGAELQDR 310 Query: 294 VRVLNNSPDIARA 306 ++ + A Sbjct: 311 LQRTETVAEARAA 323 >UniRef50_Q8SUV4 Putative uncharacterized protein ECU07_1610 n=1 Tax=Encephalitozoon cuniculi RepID=Q8SUV4_ENCCU Length = 341 Score = 236 bits (602), Expect = 8e-61, Method: Composition-based stats. Identities = 76/285 (26%), Positives = 130/285 (45%), Gaps = 23/285 (8%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 +APM G + R L ++ + ++ TE V L R + + + + Sbjct: 13 FAVAPMVGNSEEAWRRL-SKRHGANIFYTEMVHCDSFLRGS----RNPVKNRWYTTSEGD 67 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 + VQ+ G P+ + E AA ++ +D+N GCP K G GA L ++ +L + Sbjct: 68 RPLVVQICGNSPEVMLE-AALIIQDHCDAIDVNFGCPQKVARKGGYGAYLQENWKLTGEI 126 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRA-EHI 181 K + + ++PV K+R+ + S EK E A +++AG + L VHGRT++Q A Sbjct: 127 VKVLSSGL--NVPVFCKIRV-FGSIEKTVEYAKMIEEAGCSLLAVHGRTRDQRGAAMGFA 183 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNE 241 W+ I I++ L IPV++NG I +C+ +GCD VM+G L+ P + Sbjct: 184 SWKHIRAIKENLRIPVLSNGNIMTHHDVWRCLEYTGCDGVMVGEAHLHNPLIFTGED--- 240 Query: 242 PRMPWPEVVALLQKYTR--LEKQGDTGLYHVARIKQWLSYLRKEY 284 + ++ +Y +E G + H IK + L Y Sbjct: 241 -----RSCLEIIGEYLDICMEFPGSADVRH---IKSHMFRLLYNY 277 >UniRef50_A6DU09 Dihydrouridine synthase family protein n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DU09_9BACT Length = 334 Score = 235 bits (601), Expect = 1e-60, Method: Composition-based stats. Identities = 76/323 (23%), Positives = 134/323 (41%), Gaps = 17/323 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDY---DLCITEFVRVVDQLLP---VKVFHRICPELQNA 56 + LAPME V D++ R++L E + +EF+ P KV HR + Sbjct: 13 IALAPMEDVTDTVFRQILLETAQPKNLQVVFSEFISTDGLCHPIGHDKVIHRFLISDEER 72 Query: 57 SRTPSGTL-VRVQLLGQFPQWLAENAARAVELG-SWGVDLNCGCPSKTVNGSGGGATLLK 114 + + Q+ G+ P +E ++ V+ GVD+N GCP + GG + L+ Sbjct: 73 KLLKEKNIKIVAQVWGKNPDKFSEAISKYVDPEVFDGVDINMGCPVAKIVKQGGCSALIN 132 Query: 115 DPELIYQGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQ 174 PE+ + A + A LPVSVK R G + K E + + +++HGRT++Q Sbjct: 133 TPEIAKELVLAAKAA--TKLPVSVKTRTGI-TAHKTEEWMTHLLEVEPAAIILHGRTQKQ 189 Query: 175 GYRAEHIDWQAIG---DIRQRL--NIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALN 229 W I +R RL +IP NG++ + A Q D MIGRG + Sbjct: 190 QSEG-LASWDEIAKGARVRDRLKPHIPFWGNGDVRSIEQAHQLCQEHKLDGAMIGRGVFH 248 Query: 230 IPNLSRVVKYNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATE 289 P + + +P E +ALL ++ L + ++++ + + A Sbjct: 249 NPWIFNTDLLGDNVLPPEEKIALLWRHASLYTSFWGSQKNFLTLRRFFKIYAQGFPGANA 308 Query: 290 LFQHVRVLNNSPDIARAIQAIDI 312 + ++ ++ ++ Sbjct: 309 FRSEIMQTKKLDEVRALLEKHEL 331 >UniRef50_B7PPV8 tRNA-dihydrouridine synthase, putative n=1 Tax=Ixodes scapularis RepID=B7PPV8_IXOSC Length = 483 Score = 235 bits (599), Expect = 2e-60, Method: Composition-based stats. Identities = 76/292 (26%), Positives = 122/292 (41%), Gaps = 16/292 (5%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 R ++APM + R LL + LC T + L K + Sbjct: 19 RYVVAPMVDQSELAWR-LLGRRHGAQLCYTPMLHASVFLKDPKYRRDAL------ASCDE 71 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + VQ P+ L + A+R V VDLN GCP GA L D +L+ + Sbjct: 72 DQPLVVQFCANDPEVLVQ-ASRLVVGHCCAVDLNLGCPQAIARAGHYGAFLQDDWDLLAR 130 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQ-GYRAEH 180 + + V +P++ KVR+ + EK A ++ AG L VHGRT+EQ G Sbjct: 131 MVQRVHTQV--DVPITCKVRV-FPEVEKTVRYAQMLEAAGCQVLTVHGRTREQKGPHTGL 187 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 W+ I +++ + IPVIANG I + A++C+ +G DAVM G L+ P L + Sbjct: 188 ASWEHIRAVKRSVKIPVIANGNIQYLEDAERCLRETGADAVMSAEGHLHNPYLFTG-RLA 246 Query: 241 EPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQ 292 E + L++ + H+ ++ + + D +L + Sbjct: 247 PVWEASLEYLCLVRDHP---CPASYVRGHLFKLMHHCLTMAENVDLREKLAK 295 >UniRef50_B8GW86 tRNA-dihydrouridine synthase n=7 Tax=Alphaproteobacteria RepID=B8GW86_CAUCN Length = 335 Score = 234 bits (598), Expect = 3e-60, Method: Composition-based stats. Identities = 86/327 (26%), Positives = 147/327 (44%), Gaps = 25/327 (7%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 RV +APM GV D RE + + TE V F + P++ + Sbjct: 15 RVWIAPMTGVSDLPFRETASALGAP-YVATEMV-------ASAEFAKGRPDVVRRAAVGE 66 Query: 62 GTLVRV-QLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGG-GATLLKDPELI 119 G + V QL+G+ ++A+ A A E G+ +DLN GCP+K V G+ L+++P Sbjct: 67 GLPLTVIQLVGRDVDFMAQGARMAQEAGAEIIDLNFGCPAKEVAAGAACGSALMREP--D 124 Query: 120 YQGAKAMREAVPAHLPVSVKVRLGWD-SGEKKFEIADAVQQAGATELVVHGRTKEQGYRA 178 A +PV+VK+RLGWD +IA + AGA + VHGRT+ Q Y+ Sbjct: 125 LAEALVAAAVEAVDVPVTVKMRLGWDIDCLNAPDIARRAEAAGAKAVTVHGRTRNQFYKG 184 Query: 179 EHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK 238 DW A+ ++Q +++PV+ NG+I D ++A+Q + SG D VMIGRG P ++ ++ Sbjct: 185 -VADWTAVAAVKQAVSVPVLVNGDIVDGETARQALEQSGADGVMIGRGVYGRPWIAGAIE 243 Query: 239 YNEPRMPW-----PEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYD------EA 287 + E +A+ + R + ++ L+ + Sbjct: 244 AALEGRGFQEPEAEERLAIAITHFRRSLSFYGERLGLKMFRKHLASYIEAAPWPETAEAR 303 Query: 288 TELFQHVRVLNNSPDIARAIQAIDIEK 314 + L + + A++ + + + Sbjct: 304 RAARASLCRLEDPAAVESALRTLWLAE 330 >UniRef50_Q4P1U2 tRNA-dihydrouridine synthase 3 n=4 Tax=Eukaryota RepID=DUS3_USTMA Length = 867 Score = 234 bits (597), Expect = 3e-60, Method: Composition-based stats. Identities = 81/340 (23%), Positives = 132/340 (38%), Gaps = 40/340 (11%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 + LAP+ + R + T D+ E L H E R S Sbjct: 492 LYLAPLTTTGNLPFRRICTGYGS-DIHCGEM------GLAESFLHGNAAEWSLVRRHESE 544 Query: 63 TLVRVQLLGQFPQWL---AENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELI 119 + QL G P L AE V G VD+NCGCP V G G+ LL P + Sbjct: 545 RIFGTQLCGGKPDLLVPVAEALKAEVGDGLDFVDINCGCPIDLVFNKGAGSALLDHPTKL 604 Query: 120 YQGAKAMREAVPAHLPVSVKVRLGWDSGEKKFE-IADAVQQAGATELVVHGRTKEQGYRA 178 + + M AV P+++K+R G + + + A A + +HGR+++Q Y+ Sbjct: 605 SKIVRGM-NAVLGDTPLTIKLRTGTGAKQTTHKIFAKAQTEWRVAAATLHGRSRKQRYKN 663 Query: 179 EHIDWQAIGDIR--------------------QRLNIPVIANGEIWDWQSAQQCMAISGC 218 + DW I + + IPV NG+++ WQ + + + Sbjct: 664 D-ADWGYIATCANTLRESVSEWNESSRFADEPEMVPIPVYGNGDVYSWQDYYERIERTHV 722 Query: 219 DAVMIGRGALNIPNLSRVVKY-NEPRMPWPEVVALLQKYTR--LEKQG--DTGLYHVAR- 272 D MI RGAL P L +K + + E + +++K+ L G G+ R Sbjct: 723 DGEMIARGALIKPWLFTEIKERRDWDISSRERLDMMRKFAEYGLTHWGSDTHGVNTTRRF 782 Query: 273 IKQWLSYLRKEYDEATELFQHVRVLNNSPDIARAIQAIDI 312 + + +S+ + F R LN+ P + R ++ Sbjct: 783 MCEMMSFTHRYVPTGLLEFLPSR-LNDRPPLFRGRDELET 821 >UniRef50_C8QWB5 Dihydrouridine synthase DuS n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QWB5_9DELT Length = 335 Score = 234 bits (597), Expect = 4e-60, Method: Composition-based stats. Identities = 93/323 (28%), Positives = 148/323 (45%), Gaps = 25/323 (7%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 +LLAPM G+ S +R L+ E L TE + ++ H R PS Sbjct: 20 LLLAPMAGLTHSALRRLVQEQGGVGLLSTEMLAAK------RLPHENPTLSPYLVRHPSE 73 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 + QLL P +A A A ELG+ +DLN GCP+ + GGG+ L+++P+++ + Sbjct: 74 QPLSFQLLLTSPAEVAAAVASAEELGAAAIDLNLGCPAPDIRRQGGGSRLMEEPQMVRRL 133 Query: 123 AKAMREAVPAHLPVSVKVRLGWD-SGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 + R LP+S K+RLG + + E+ ++ AG L VH R + + Y Sbjct: 134 VQETRRRTA--LPLSAKIRLGEELNAERLRAFCLLLEDAGVDLLTVHARLRGEPY-GRKP 190 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNE 241 W+ +G ++ L IPV+ANG I+ A C+A SG D +MIGR A P L R + Sbjct: 191 RWEWVGKVKHWLRIPVVANGGIFSAADAAACLAASGADGLMIGRAAAATPWLFRQLAEGW 250 Query: 242 PRMPWP------------EVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATE 289 P + A+ +++ L K+ T + R+K++ Y + Y Sbjct: 251 ATDFAPGHDELSTAPSQEQKAAIYRRFCELLKESFTPERRLGRLKEFTHYYARNYQFGHH 310 Query: 290 LFQHVRVLNNSPDIARAIQAIDI 312 L V +SPD+ A + + Sbjct: 311 LAAAV---QSSPDLDTARRRAEH 330 >UniRef50_B7APY3 Putative uncharacterized protein n=1 Tax=Bacteroides pectinophilus ATCC 43243 RepID=B7APY3_9BACE Length = 321 Score = 233 bits (596), Expect = 5e-60, Method: Composition-based stats. Identities = 73/318 (22%), Positives = 123/318 (38%), Gaps = 17/318 (5%) Query: 2 RVLLAPMEGVLDSLVRELLTE-VNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTP 60 ++ APMEGV + R ++ + D T F+ + R N R Sbjct: 10 KLYAAPMEGVTGYIYRNIIDDCFGGADRYFTPFISTNTNKTFTEQERRDIDSGNNRPRD- 68 Query: 61 SGTLVRVQLLGQFPQWLAENAARAV-ELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELI 119 V Q+L + E G V+LN GCPS TV GA L P+ + Sbjct: 69 ----VIPQILSNNSCDCIKVIRALHDEYGYDEVNLNLGCPSPTVVTKHKGAGFLAFPDKL 124 Query: 120 YQGAKAM-REAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRA 178 + A + VSVK R G +S ++ +I D Q +EL+VH R ++ Y+ Sbjct: 125 DSFLNDVFVAAGKDGVRVSVKTRTGVESHDEFIKILDIYNQYPLSELIVHPRVQKDLYKN 184 Query: 179 EHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCM-AISGCDAVMIGRGALNIPNLSRVV 237 D+ PV NG+I Q+ +G +AVM GRG + P + + Sbjct: 185 SP-DYDIFEYAYTNSKAPVCYNGDICSVDDYQRITSRFNGLNAVMCGRGMITNPAIFATI 243 Query: 238 KYNEP---RMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHV 294 + R A+ ++Y + + + ++K+ Y+ + +D A ++ + Sbjct: 244 NGGDKLSSRALRTFHNAVFKEYCAVMGE----RNALFKMKELWYYMIRNFDGADRYYKSI 299 Query: 295 RVLNNSPDIARAIQAIDI 312 R D A+ + Sbjct: 300 RKAQRRCDYEAAVNELFA 317 >UniRef50_Q582L4 TRNA-dihydrouridine synthase 3, putative n=5 Tax=Trypanosomatidae RepID=Q582L4_9TRYP Length = 528 Score = 233 bits (596), Expect = 5e-60, Method: Composition-based stats. Identities = 78/324 (24%), Positives = 134/324 (41%), Gaps = 26/324 (8%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 +++LAP+ V + R + E D+ + E V + K E R S Sbjct: 167 KLVLAPLTTVGNLPFRRVCKEYG-ADITVGEMAIVHNLNRLQKS------EWSLLRRHSS 219 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELG--SWGVDLNCGCPSKTVNGSGGGATLLKDP-EL 118 + +Q+ P A E G VD+NCGCP V SG G L + Sbjct: 220 EDIFGLQIAVSRPHDAITWAQAVEESGFSYDFVDINCGCPVDKVVLSGCGCGLWERKGNR 279 Query: 119 IYQGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQ---AGATELVVHGRTKEQG 175 + +++ PV++K R+G D E+ E+ + GA + +HGR++ Q Sbjct: 280 LRDVVQSLVAHQSK--PVTIKCRMGPD--EENPELHKHIADYETWGAAAVTIHGRSRRQR 335 Query: 176 YRAEHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAIS-GCDAVMIGRGALNIPNLS 234 Y + +W I + ++PVI NG+I+ + + A S + MIGRGAL P + Sbjct: 336 Y-TKLANWSYIDNCASLTSLPVIGNGDIFSCEDIVEHRAQSKNVSSFMIGRGALVKPWIF 394 Query: 235 RVVKYNE-PRMPWPEVVALLQKYTR--LEKQG--DTGLYHVARIK-QWLSYLRKEYDEAT 288 +K + E +L+++ L G + G+ + R +WLS+L + Y Sbjct: 395 EEIKTGRVWDISSHERFEMLRRFCNFGLSHWGADERGVLNTRRFLCEWLSFLCR-YVPVG 453 Query: 289 ELFQHVRVLNNSPDIARAIQAIDI 312 L + + +N P ++ Sbjct: 454 LLERPPQRINERPPYYEGRDELET 477 >UniRef50_A4E892 Putative uncharacterized protein n=4 Tax=Collinsella RepID=A4E892_9ACTN Length = 317 Score = 233 bits (596), Expect = 5e-60, Method: Composition-based stats. Identities = 85/320 (26%), Positives = 135/320 (42%), Gaps = 19/320 (5%) Query: 1 MRVLLAPMEGVLDSLVRELLTE-VNDYDLCITEFVRV--VDQLLPVKVFHRICPELQNAS 57 M + LAPMEG+ + R + E D T F+ V K F I P Sbjct: 1 MILSLAPMEGITGHVFRRVHAECFGALDCYYTPFLPPPRVGNRFGGKAFKEIDPA----- 55 Query: 58 RTPSGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPE 117 G V QL+ + ++G V+LN GCPS TV G G+ L++ + Sbjct: 56 -NNQGLNVVPQLMSKNADEFVWAVQVLADMGYREVNLNLGCPSGTVVAKGKGSGFLRNLD 114 Query: 118 LIYQGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYR 177 + + E P LPVSVK RLG ++ ++ + D + EL+VH R ++ Y Sbjct: 115 ELEAFLSDVCERSP--LPVSVKTRLGLENDDEYERVLDLYCRMPLAELIVHPRVQKDRYT 172 Query: 178 AEHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMA-ISGCDAVMIGRGALNIPNLSRV 236 + G+ +R PV NG+I+D + + G VM+GRG L P L+R+ Sbjct: 173 GLPRK-EFYGETLERAPFPVAYNGDIFDLEDMDALVEAYPGTRHVMLGRGLLANPALARM 231 Query: 237 VKYNEPRMPWPEVVALLQKYTRLEKQG--DTGLYHVARIKQWLSYLRKEYDEATELFQHV 294 VK P L + + L + G V R+K+W Y + + + + + V Sbjct: 232 VKGG----PAATAAELHRFHDTLFAAYAEEIGGNAVFRMKEWWFYAKCAFADPATVHKIV 287 Query: 295 RVLNNSPDIARAIQAIDIEK 314 R + A++ + E+ Sbjct: 288 RKTKKVDEYRAAVERVFREQ 307 >UniRef50_UPI0001BC2F14 dihydrouridine synthase DuS n=1 Tax=Butyrivibrio crossotus DSM 2876 RepID=UPI0001BC2F14 Length = 305 Score = 233 bits (594), Expect = 9e-60, Method: Composition-based stats. Identities = 69/314 (21%), Positives = 119/314 (37%), Gaps = 14/314 (4%) Query: 1 MRVLLAPMEGVLDSLVRELLTE-VNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRT 59 M++ LAPME + + R + D D T F+ + L K + + PE Sbjct: 1 MKLYLAPMEALTGYIFRNVYNRYFGDADRYFTPFI--ASRKLNSKEKNDVLPE------H 52 Query: 60 PSGTLVRVQLLGQFPQWLAENAARAVEL-GSWGVDLNCGCPSKTVNGSGGGATLLKDPEL 118 V Q+L + A+R E G V+LN GCPS TV G+ L P+ Sbjct: 53 NQNMDVIPQILTNKSEEFCYIASRLKEYYGYEEVNLNLGCPSGTVVAKNRGSGFLAVPDE 112 Query: 119 IYQGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRA 178 + + + + + SVK R G ++ E I + +EL++H R ++ GY Sbjct: 113 LNRFFEEVFSMTDVRI--SVKTRTGVENNENWENILKIYNEYPISELIIHPRCRKDGY-G 169 Query: 179 EHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQC-MAISGCDAVMIGRGALNIPNLSRVV 237 + + + NG+I + D +M GRG L P L + Sbjct: 170 GKPNLEDFKKAVLISRHSLCYNGDINSVEDYNAITKEFPTVDKIMCGRGILMNPGLFSEI 229 Query: 238 KYNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVL 297 K + P Y ++ + ++K++ Y K ++E ++ + VR Sbjct: 230 KGSRKASPETLYNFANDLYKGYKEIMSGDRNVLFKLKEFWIYFSKNFEEPDKVLKMVRKA 289 Query: 298 NNSPDIARAIQAID 311 + A+ I Sbjct: 290 DTCIQYEVAVGRIF 303 >UniRef50_B5RQ77 Histidine phosphokinase/phophatase, putative n=4 Tax=Borrelia RepID=B5RQ77_BORRA Length = 339 Score = 232 bits (593), Expect = 9e-60, Method: Composition-based stats. Identities = 78/326 (23%), Positives = 135/326 (41%), Gaps = 21/326 (6%) Query: 1 MR---VLLAPMEGVLDSLVRELLTEVN----DYDLCITEFVRVVDQLLPVKVFHRICPEL 53 M+ ++LAPME V D++ R L+ + D+ TEF+ V L K + Sbjct: 15 MKRPIMILAPMEDVTDTVFRNLINLIGNGKDGPDIYFTEFISVKGLLNKSKN----SMQH 70 Query: 54 QNASRTPSGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLL 113 + Q+ G P + LG WG+DLN GCP K + G + L+ Sbjct: 71 ILTKNDELSRPLIAQIWGDDPDKFVKAIEILSNLGFWGIDLNMGCPKKKIVKKGVCSALI 130 Query: 114 KDPELIYQGAKAMREAV-PAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTK 172 + L ++ A +EA LP+SVK R G+ E + + + G L VH R Sbjct: 131 NNKSLAHEIIIASKEACLKYGLPLSVKTRHGFFCSEV-EDWLGFLLKLGIDMLTVHPRLV 189 Query: 173 EQGYRAEHID---WQAIGDIRQRLN--IPVIANGEIWDWQSAQQCMAISGCDAVMIGRGA 227 ID + + +R ++N + +I NG++ A Q + D +M GRG Sbjct: 190 INQSEG-PIDVNVFDELVKLRNKINPYVVIIGNGDVLSLNQAYQMINKYSIDGIMFGRGI 248 Query: 228 LNIPNLSRVVKYNEPRMPWPEVVALLQKYTRLEKQGDTGLYH-VARIKQWLSYLRKEYDE 286 L NL R + N + +L+ + + G+ ++K++ E + Sbjct: 249 LKNLNLFRRDEPNFLDSDLNFRLNILKLHIT-DFHSTWGITKDFNKLKKYFKIYFNENEI 307 Query: 287 ATELFQHVRVLNNSPDIARAIQAIDI 312 +E F ++ NN ++ + I++ Sbjct: 308 CSEYFYNIMSSNNYDELFENLSRINV 333 >UniRef50_B1MZ90 tRNA-dihydrouridine synthase n=39 Tax=Bacteria RepID=B1MZ90_LEUCK Length = 378 Score = 232 bits (593), Expect = 1e-59, Method: Composition-based stats. Identities = 72/315 (22%), Positives = 130/315 (41%), Gaps = 19/315 (6%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 LAPME V D++ R ++ + D+ TEF + P F + + Sbjct: 31 FSLAPMEAVTDTIFRRVVAQAGPPDVYYTEFTNASSMVHPKAKF----SVQGRLAVAENE 86 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 Q+ G P+ +A A +G VD+N GCP TV +G G+ L++ +L + Sbjct: 87 AQPVAQIWGSRPEDIAGAAKILPTMGYRAVDINMGCPDATVIKNGAGSDLIRHDDLAEKI 146 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHID 182 A + + LPVSVK RLG+ E+ + + + L VH R++++ +A Sbjct: 147 ISAAK---TSGLPVSVKTRLGFYHAEEFRDWLPIILRQNVAVLTVHLRSRKEMSKA-PAH 202 Query: 183 WQAIGDI-----RQRLNIPVIANGEIWDWQSAQQCMAI-SGCDAVMIGRGALNIPNLSRV 236 + I +I + + NG+I I G D +MIGRG P Sbjct: 203 VEYIDEILAMRDKLAPKTLIQINGDIKTRAEGLALAKIHPGIDGIMIGRGIFENPYAFEK 262 Query: 237 VKYNEPRMPWPEVVALLQKYTRLEKQGDTGLY--HVARIKQWLSYLRKEYDEATELFQHV 294 + E +ALL++ L + + H +K++ + + A+ L Q + Sbjct: 263 IPRQH---TLEESIALLKRQLDLFDDVNANVTPKHFEALKRYFKIYLRGFAHASSLRQLL 319 Query: 295 RVLNNSPDIARAIQA 309 +++ ++ + + Sbjct: 320 METHSTTEVRQILTR 334 >UniRef50_A5Z3X7 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=A5Z3X7_9FIRM Length = 326 Score = 232 bits (591), Expect = 2e-59, Method: Composition-based stats. Identities = 78/326 (23%), Positives = 137/326 (42%), Gaps = 21/326 (6%) Query: 1 MRVLLAPMEGVLDSLVRELLTE-VNDYDLCITEFVR-VVDQLLPVKVFHRICPELQNASR 58 M AP+EGV R + +D D F+ ++ L K + PE N Sbjct: 1 MEFYFAPLEGVTGFTYRNAYNDLFDDMDKYYAPFISPSINDRLKGKEIRDLLPENNN--- 57 Query: 59 TPSGTLVRVQLLGQFPQWLAENAARAVELGSW-GVDLNCGCPSKTVNGSGGGATLLKDPE 117 G + Q+L + + A + +ELG ++LN GCPS TV GA LKD E Sbjct: 58 --KGINLVPQILANRADYFIKAANQLIELGYDKEINLNAGCPSGTVVSKNKGAGFLKDTE 115 Query: 118 LIYQGAKAM------REAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRT 171 + + + + +L +SVK R+G ++ I + + ++L+VH RT Sbjct: 116 AMDRFFDETFNWLEKKNSEGHNLSISVKTRIGMYEPDEFENILEVYNKYPISQLIVHPRT 175 Query: 172 KEQGYRAEHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDA------VMIGR 225 +EQ Y+ + +A + PV NG+I ++ + + D+ +MIGR Sbjct: 176 REQLYKGTP-NMEAFKYALENSKNPVCYNGDINTVENYHRIIEKINDDSEMKIGSIMIGR 234 Query: 226 GALNIPNLSRVVKYNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYD 285 G + PNL +K + V + Y EK + + ++K+ +Y+ +D Sbjct: 235 GLIGNPNLVNEIKGGKKLTKKMLEVYHDRLYNDFEKIMKADKHLLFKMKEMWTYMSLNFD 294 Query: 286 EATELFQHVRVLNNSPDIARAIQAID 311 ++ + + +R N A+ I Sbjct: 295 DSHKCAKLIRKAQNLYKYNLAVYEIF 320 >UniRef50_A4S141 Predicted protein (Fragment) n=1 Tax=Ostreococcus lucimarinus CCE9901 RepID=A4S141_OSTLU Length = 307 Score = 232 bits (591), Expect = 2e-59, Method: Composition-based stats. Identities = 76/289 (26%), Positives = 119/289 (41%), Gaps = 24/289 (8%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 R +APM + REL L T + + K I S + Sbjct: 17 RYHVAPMVDQSELAFRELCKRYG-ATLGYTPMIHARLFVESPKYRREI------FSTSTR 69 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + Q P+ L AA + GVD+N GCP + GA L+ D + + Sbjct: 70 DRPLLAQFCANDPEILLR-AATMIAPYCDGVDINFGCPQRIAKRGNYGAFLMDDWKTVEA 128 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAE-H 180 + + E +P +PV+ K+R+ +D E + A V+ AGA + VHGRT+EQ A+ Sbjct: 129 LIRKLDEELP--VPVTAKIRV-YDDLETTLKYAKMVEAAGAQIVAVHGRTREQKRCADIR 185 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRV-VKY 239 +W I I+ L +PV+ANG+I A+ C+ +G D V+ L+ P L Y Sbjct: 186 ANWAYIRAIKDALKVPVLANGDIRSLAEARACLEATGADGVLSAEPLLSNPALFSDPPFY 245 Query: 240 NEPRMPWPEV-------VALLQKYTRLEKQGDTGLY----HVARIKQWL 277 P + + V L+ +Y + K T HV ++ Sbjct: 246 AAPTDGYAPIPLDGVAAVDLMIEYFDICKSYTTSFSYIRGHVWKLVGHW 294 >UniRef50_Q4PG83 Putative uncharacterized protein n=2 Tax=Ustilaginomycotina RepID=Q4PG83_USTMA Length = 527 Score = 232 bits (591), Expect = 2e-59, Method: Composition-based stats. Identities = 82/326 (25%), Positives = 131/326 (40%), Gaps = 41/326 (12%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 R ++APM + R L DL T + ++ + N +R + Sbjct: 50 RRVVAPMVDQSELAWRILSRRYGS-DLVYTPMINAKLFADENSKKKKVKYQEVNFNREHA 108 Query: 62 G-----------------------TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGC 98 + VQ P+ L + AA+ VE VDLN GC Sbjct: 109 EEGASSPIASLLSNEGEGSSKDTDRPLFVQFCSNDPETLLK-AAKVVEDRCDAVDLNLGC 167 Query: 99 PSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQ 158 P G+ L++D LI+ + V +PV+ K+R+ ++S EK A ++ Sbjct: 168 PQHIARRGHYGSYLMEDWSLIFSLINILH--VNLKVPVTAKMRV-YESVEKTITYARLLE 224 Query: 159 QAGATELVVHGRTKEQ-GYRAEHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISG 217 +AGA + VHGRT+ G+ DW I +++ +N+PV ANG + Q +A +G Sbjct: 225 RAGAQIITVHGRTRNMKGHLTGLADWAKIRAVKEAVNVPVFANGNVLYPQDFYDALAATG 284 Query: 218 CDAVMIGRGALNIPNL--------SRVVKYNEPRMPWPEVVALLQKYTRLEKQGDTGLYH 269 D VM G L P + + N P +P P +V + +Y + T Sbjct: 285 ADGVMSAEGNLYNPAIMLPNPPKQPSAMFPNAPELPLPSIVKMAHEYLDIVCSLRTPTQS 344 Query: 270 VARIKQWLSYLRKEYDEATELFQHVR 295 A IK L L + A E+ + +R Sbjct: 345 SA-IKAHLFRLCR---PALEVHRDLR 366 >UniRef50_C8X0F5 Dihydrouridine synthase DuS n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X0F5_DESRD Length = 341 Score = 231 bits (590), Expect = 2e-59, Method: Composition-based stats. Identities = 77/307 (25%), Positives = 127/307 (41%), Gaps = 10/307 (3%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 R LL+PM GV +R LL + + L TE L + ++ T Sbjct: 23 RFLLSPMVGVTHVALRRLLHDFGGFGLHWTEMCSASAVLQEDPRISPVFRFHRDELAT-- 80 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + Q++G P+ +A A R + G +GVD+N GC V G GA LL+D Sbjct: 81 ---LVCQIMGSEPETMAAAARRIQDEGFFGVDINMGCCVAAVRQQGAGAALLRDISRAAA 137 Query: 122 GAKAMREAVPAHLPVSVKVRLGW-DSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 A+R+AV +P+ VK+R GW D G A A +AGA L+VH R R Sbjct: 138 IVDAVRQAV--DIPLFVKLRSGWTDQGPVVVHAARACAKAGADALIVHPRLAPDR-RTRP 194 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 W+ I + + +++PV NG ++ A + +GC + +GR A P ++ + Sbjct: 195 PQWRDIRAVCEAVDLPVFGNGNVFTADDATAMLRQTGCQGIALGRMAAARPWIAAEWLGH 254 Query: 241 EPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNNS 300 P + Q+ L + +++++Y + L + Sbjct: 255 FHPAP-ETYPKVAQRMVELLWTSFPEGQALRLYRKFMNYFAANFAFGHRLRSDLTRSATP 313 Query: 301 PDIARAI 307 D+ + I Sbjct: 314 EDLYKEI 320 >UniRef50_B1XI00 Dihydrouridine synthase A n=8 Tax=Chroococcales RepID=B1XI00_SYNP2 Length = 344 Score = 231 bits (589), Expect = 3e-59, Method: Composition-based stats. Identities = 69/287 (24%), Positives = 118/287 (41%), Gaps = 28/287 (9%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 + +APM D R L+ + L TE + + + + + Sbjct: 14 LSVAPMMDRTDRHFRYLMRRITRRTLLYTEMITTQAIIHGDRP--------KLLDFDAAE 65 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 + +QL G P+ LAE A + G ++LN GCPS V GA L+ PEL+ Sbjct: 66 HPISLQLGGDNPKELAECAKVGEDWGYDEINLNVGCPSPRVQQGNFGACLMTQPELVADC 125 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQ---QAGATELVVHGR-------TK 172 AM+ AV ++PV+VK R+G D + ++ ++ G VH R + Sbjct: 126 VAAMQGAV--NIPVTVKHRIGVDEQDSYADLCRFIEIVSATGCDRFSVHARKAWLQGLSP 183 Query: 173 EQGYRAEHIDWQAIGDIRQRL-NIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIP 231 ++ + + + ++Q ++ + NG I + Q + + DAVM+GR A + P Sbjct: 184 KENRTVPPLRYADVYRLKQDFPHLWIEINGGITTLEHIQTHL--TQVDAVMVGRAAYDNP 241 Query: 232 NLSRVVK---YNEPRMPWP--EVVALLQKYTRLEKQGDTGLYHVARI 273 L V Y E P E+V + Y + L+ ++R Sbjct: 242 YLFATVDRDIYGEAIQPKSRHEIVEEMLPYIERATKAGVKLHSISRH 288 >UniRef50_A8QBG9 PP3111 protein, putative n=1 Tax=Brugia malayi RepID=A8QBG9_BRUMA Length = 513 Score = 230 bits (588), Expect = 3e-59, Method: Composition-based stats. Identities = 79/312 (25%), Positives = 130/312 (41%), Gaps = 22/312 (7%) Query: 1 MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTP 60 +R ++APM + R +L + + LC + + + + R S Sbjct: 60 IRYVVAPMVDQSELAFRMMLRKHGAH-LCFSPMIHAQ-LFVTDATYRRTA-----LSTCL 112 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 + VQ P L NA + VE GVDLN GCP GA L +D +LI Sbjct: 113 DDRPLVVQFCANDPVILL-NACQLVESFCDGVDLNLGCPQLIAKRGHYGAYLQEDLKLIC 171 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQG-YRAE 179 + + + LP+S K+R+ D E A A+ +AGA L VHGRT+EQ Sbjct: 172 EMITLLHSH--SRLPLSCKIRILQDINE-TVAYARALVKAGACMLTVHGRTREQRGPNTG 228 Query: 180 HIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY 239 DW A+ + +++PV+ANG I +C+ I+G A+M G L+ P L ++ Sbjct: 229 LADWYAMRAVVSAVDVPVLANGNIQLPGDVDRCLEITGASAIMSAEGILSNPYLF-EKRH 287 Query: 240 NEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNN 299 E + ++Y E H+ RI E ++L + + + Sbjct: 288 EVNWTAAREYLDFAERY---ESTTSAVRAHLFRICHH------SLLEYSDLRERLSYVCT 338 Query: 300 SPDIARAIQAID 311 + D + + ++ Sbjct: 339 TEDFRQIMDDLE 350 >UniRef50_Q9FH91 Gb|AAF51525.1 n=7 Tax=Viridiplantae RepID=Q9FH91_ARATH Length = 423 Score = 230 bits (588), Expect = 4e-59, Method: Composition-based stats. Identities = 66/299 (22%), Positives = 117/299 (39%), Gaps = 25/299 (8%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 + ++APM + R L + T + K Q + Sbjct: 89 KYIVAPMVDNSELPFRLLCQKYG-AQAAYTPMLHSRIFTETEK------YRNQEFTTCKE 141 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + VQ P L E A R VE VD+N GCP + GA L+ + L+ Sbjct: 142 DRPLFVQFCANDPDTLLEAAKR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKS 200 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTK-EQGYRAEH 180 + + + + ++PVS K+R+ + + E + A ++ AG + L VHGRT+ E+ + Sbjct: 201 LVEKLAQNL--NVPVSCKIRI-FPNLEDTLKYAKMLEDAGCSLLAVHGRTRDEKDGKKFR 257 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 DW AI +++ + IPV+ANG + + C+ +G + V+ L P + Sbjct: 258 ADWSAIKEVKNAMRIPVLANGNVRCIEDVDNCIKETGVEGVLSAETLLENPAAFAGFRTA 317 Query: 241 EPRMPWPE---------VVALLQKYTRLEKQGDTG----LYHVARIKQWLSYLRKEYDE 286 E E L+ +Y +L ++ HV ++ + + E Sbjct: 318 EWAKDNEEEGFVDGGLDQGDLVVEYLKLCEKHPVPWRMIRSHVHKMLGEWFRIHPQVRE 376 >UniRef50_Q2SJJ8 TRNA-dihydrouridine synthase n=7 Tax=Gammaproteobacteria RepID=Q2SJJ8_HAHCH Length = 349 Score = 230 bits (588), Expect = 4e-59, Method: Composition-based stats. Identities = 76/329 (23%), Positives = 122/329 (37%), Gaps = 33/329 (10%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 R +APM D R L ++ + TE V + + + Sbjct: 19 RFSVAPMMDWTDRHYRYLARLLSRHTYLYTEMVTTGAIIHGDRN--------RFLDFNAE 70 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + VQL G P L E A + G ++LN GCPS V + GA L+ PE + + Sbjct: 71 EHPIAVQLGGSNPDELKECAKICEDWGYDEINLNVGCPSDRVQNNMIGACLMGYPERVAE 130 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEK---KFEIADAVQQAGATELVVHGR-------T 171 AM AV +PV+VK R+G D + V+ AG + ++H R + Sbjct: 131 CVAAMCSAVS--IPVTVKHRIGIDDQDSEEFLLNFVRTVKAAGCSTFIIHARKAILKGLS 188 Query: 172 KEQGYRAEHIDWQAIGDIRQRL-NIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNI 230 ++ + + I+Q + +I NG I ++ + D VMIGR A Sbjct: 189 PKENREIPPLIYPRAYLIKQTFPELEIIINGGIKTMDESESHLQE--VDGVMIGREAYQR 246 Query: 231 PNLSRVVKYNEPRMPWPEVVALLQKYTRLE-----KQGDTGLYHVARIKQWLSYLRKEYD 285 P + V + P P A Y LE Q ++H+AR L Sbjct: 247 PWMLADVDHRLFHCPPPSFSATDIGYQFLEYIERNYQNGVAVWHMAR---HALGLFHGQK 303 Query: 286 EATELFQHV--RVLNNSPDIARAIQAIDI 312 + +++ + + A+DI Sbjct: 304 GGKQFRRYLSENAIKRTASPTVFRDALDI 332 >UniRef50_B9HRE5 Predicted protein (Fragment) n=11 Tax=Eukaryota RepID=B9HRE5_POPTR Length = 362 Score = 230 bits (588), Expect = 4e-59, Method: Composition-based stats. Identities = 75/298 (25%), Positives = 126/298 (42%), Gaps = 27/298 (9%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 ++ LAP+ V + R + + D+ E + L E R S Sbjct: 16 KLYLAPLTTVGNLPFRRVCKALG-ADVTCGEMAMCTNLLQGQ------ASEWALLRRHSS 68 Query: 62 GTLVRVQLLGQFPQWLAENAARA-VELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 L VQ+ G +P + E +D+N GCP V G G++LL P + Sbjct: 69 EDLFGVQICGAYPDTVTRTVELIDQECTVDFIDINMGCPIDIVVNKGAGSSLLTKPMRMK 128 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKFE-IADAVQQAGATELVVHGRTKEQGYRAE 179 +A V P++VKVR G+ G+ + + + + + GA+ + +HGR+++Q Y + Sbjct: 129 SIIEATSGTVEK--PITVKVRTGYFEGKSRIDSLIVDIGKWGASAVTIHGRSRQQRYS-K 185 Query: 180 HIDWQAIGDIRQRL--NIPVIANGEIWDWQSAQ----QCMAISGCDAVMIGRGALNIPNL 233 DW I ++ ++ V+ NG+++ + C +S C MI RGAL P + Sbjct: 186 LADWDYIYQCARKAPDSLQVLGNGDVFSFVDWNNHKSDCPELSSC---MIARGALIKPWI 242 Query: 234 SRVVKYNEPRMPWP-EVVALLQKYTR--LEKQG-DTGLYHVAR--IKQWLSYLRKEYD 285 +K E + +L+ Y R LE G DT R + +WLSY + Sbjct: 243 FTEIKEQRHWDISSGERLNILKDYVRSGLEHWGSDTKGVETTRHFLLEWLSYTCRYVP 300 >UniRef50_Q0STG2 Dihydrouridine synthase family protein n=27 Tax=Clostridiales RepID=Q0STG2_CLOPS Length = 321 Score = 230 bits (586), Expect = 6e-59, Method: Composition-based stats. Identities = 72/321 (22%), Positives = 133/321 (41%), Gaps = 20/321 (6%) Query: 1 MRVLLAPMEGVLDSLVRELLTEV-NDYDLCITEFV-RVVDQLLPVKVFHRICPELQNASR 58 M+ LAPMEG+ + R + D FV + L K + PE Sbjct: 1 MKYYLAPMEGITGFIYRNSYEKFFGGIDKYFAPFVVPNSSKSLKTKELRDVLPE------ 54 Query: 59 TPSGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPEL 118 G + Q+L + A + +LG ++LN GCPS TV G GA L E Sbjct: 55 NNKGINLVPQILTNDSEGFILTAKKLKDLGYNEINLNLGCPSGTVVGKKRGAGFLAHREE 114 Query: 119 IYQGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRA 178 + + + + + H+ +S+K RLG D E+ +E+ + EL++H RT++ Y Sbjct: 115 LDKFLEEIFKI--NHMKISIKTRLGMDKPEEFYELIKIYNKYPMEELIIHPRTRQDFY-G 171 Query: 179 EHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAI-SGCDAVMIGRGALNIPNLSRVV 237 + + D PV NG+I+ + + + D +M+GRG L P L + Sbjct: 172 NKPNLEVFKDAISLSKNPVCYNGDIFTLEDHNKLVEEFKEVDKIMLGRGILANPALMNEI 231 Query: 238 KYNEPRMPWPEVVALLQKYTRLEKQG----DTGLYHVARIKQWLSYLRKEYDEATELFQH 293 NE + + L + + + + + + R+K+ Y+ + + + Sbjct: 232 LNNE----FMDKKVLKEFHDEIFSKYREVFNEDRNAMFRMKELWGYMIYMFSNNKKYAKK 287 Query: 294 VRVLNNSPDIARAIQAIDIEK 314 ++ D +A+ ++ +E+ Sbjct: 288 IKKAQKVVDYNQAVTSLFLEQ 308 >UniRef50_A1AT39 Dihydrouridine synthase, DuS n=7 Tax=Desulfuromonadales RepID=A1AT39_PELPD Length = 342 Score = 230 bits (586), Expect = 7e-59, Method: Composition-based stats. Identities = 81/315 (25%), Positives = 146/315 (46%), Gaps = 16/315 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRI-CPELQNASRTPS 61 ++LAPM+GV +S +R L + D+ TEF+RV P R+ +L A Sbjct: 36 LMLAPMQGVTNSALRSLFIDWVRPDVVFTEFMRVN----PAAAQRRLSAADLAEAGSAGD 91 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + VQL+G + L + A + G+ ++LN GCP + G +L+ P+ + Sbjct: 92 DVPLVVQLIGHGREALVSGSQAAQDAGAAHINLNMGCPYGRMTSGQTGGGMLRSPQELSS 151 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 A+R+ + S+K+R G+D+ + F++ + +G LV+H RT Q Y A Sbjct: 152 IIPALRKTIRG--TFSIKLRSGYDNPRQIFDLLPLFEASGVDFLVLHPRTVLQKY-AGFA 208 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNE 241 D + QR +P+IANG+I + + + +G +M+GRGA++ P L + ++ Sbjct: 209 DHGITAEAVQRSTLPIIANGDIRSVATGRHVLRETGAAGLMLGRGAISDPLLFQRLRNCA 268 Query: 242 PRMPWP-EVVALLQKY-TRLEKQGDT----GLYHVARIKQWLSYLRKEYDEATELFQHVR 295 P P P E A+L +Y L + T + +IK+ +S + + + F ++ Sbjct: 269 PPDPQPQERAAMLSRYLDELLTRYQTLFCGEAQILGKIKEIVSTIHE--PAFEKGFHRLK 326 Query: 296 VLNNSPDIARAIQAI 310 + + Sbjct: 327 KARRIEAFRELLAEL 341 >UniRef50_B7G230 Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7G230_PHATR Length = 545 Score = 229 bits (585), Expect = 9e-59, Method: Composition-based stats. Identities = 75/299 (25%), Positives = 133/299 (44%), Gaps = 27/299 (9%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 +V +AP+ V + R ++ + D+ E + L E R P Sbjct: 188 KVYVAPLTTVGNLPFRRIMKKFG-ADITCGEMAVATNLLSGQ------SSEWALLKRHPE 240 Query: 62 GTLVRVQLLGQFPQWLAENAARAV-ELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 + VQ+ +P A E+ VDLN GCP V G GA L+ + + Sbjct: 241 EDIFGVQIAAGYPDVFARTCELIENEMNVDFVDLNLGCPLDIVCNKGSGAALMMRDKRLR 300 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWD-SGEKKFEIADAVQQA---GATELVVHGRTKEQGY 176 + + E + P+S+K+R GW+ + + +Q G + +++HGR++ Q Y Sbjct: 301 SSVEGILETLTC--PISIKMRTGWEMTKPFAHNLVQKIQSWGLDGISAVMIHGRSRLQRY 358 Query: 177 RAEHIDWQAIGDIRQRLN-----IPVIANGEIWDWQSAQQCMAISGCDA-VMIGRGALNI 230 A+ DW I + + + IPVI NG+I+ +Q ++ +A G ++ M+ RGAL Sbjct: 359 -AKEADWDYISMVAKSQDMSLTTIPVIGNGDIFSYQDFEEKIAREGVNSCAMLARGALIK 417 Query: 231 PNLSRVVKY-NEPRMPWPEVVALLQKYTR--LEKQGDT--GLYHVAR-IKQWLSYLRKE 283 P L +K + E + +L+ + R +E G G+ + R + +WLS+L + Sbjct: 418 PWLPTEIKERRHWDISASERLDILKDFARFGMEHWGTDQQGINNCRRFLLEWLSFLHRY 476 >UniRef50_C1MXD1 Dihydrouridine synthase n=1 Tax=Micromonas pusilla CCMP1545 RepID=C1MXD1_9CHLO Length = 424 Score = 228 bits (583), Expect = 2e-58, Method: Composition-based stats. Identities = 78/251 (31%), Positives = 118/251 (47%), Gaps = 6/251 (2%) Query: 3 VLLAPMEGVLDSLVRE-LLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 + LAPMEG+ D+ +R L V +D EF RV L ++ + Sbjct: 38 LFLAPMEGLGDARLRRSLSLSVGGFDEACREFTRVPGTLSQGAKAEKLLRGIALNGYDAE 97 Query: 62 G--TLVRVQLLGQFPQWLAENAARAV-ELGSWGVDLNCGCPSKTVNGSGGGATLLKDPEL 118 L+G P L A E + VDLNCGCP+ V G G G++LL+DP Sbjct: 98 ELSRPANASLMGSNPDLLEHCARVLARETRAPRVDLNCGCPANVVTGKGAGSSLLRDPND 157 Query: 119 IYQGAKAMREAVPAHLPV-SVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYR 177 +Y A+R V ++K+R G+D E A Q+ GA + +H RT+ QGY Sbjct: 158 VYACVSAIRRGCEGTGCVPTLKLRSGYDDDSLLRENLLAAQEGGAAFVTLHPRTRRQGYS 217 Query: 178 AEHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVV 237 +W+ I + L++PVI NG++ + A+ + +GC +M+GRGA+ P + R + Sbjct: 218 GR-ANWKDIAIAVETLDVPVIGNGDVTSPERARALLFETGCAGIMVGRGAVQDPLVFRRI 276 Query: 238 KYNEPRMPWPE 248 K W E Sbjct: 277 KAELRAGDWSE 287 >UniRef50_B6BT49 tRNA-dihydrouridine synthase A n=4 Tax=SAR11 cluster RepID=B6BT49_9RICK Length = 334 Score = 227 bits (580), Expect = 3e-58, Method: Composition-based stats. Identities = 76/335 (22%), Positives = 134/335 (40%), Gaps = 39/335 (11%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 ++ +APM D R L ++ + +E V + + + S +P Sbjct: 10 KISVAPMMDCTDRHDRFFLRLMSKNVMLYSEMVATKSAIHGDRK--------KILSYSPE 61 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + +Q+ G LAE A A ++G +++N GCPSK V + GA L+K+P+L+ + Sbjct: 62 EKPLALQVGGSNKDELAEVAKIAEDMGYDEININLGCPSKKVQKNMFGACLMKEPDLVAE 121 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKKF---EIADAVQQAGATELVVHGR-------T 171 +M ++PV+ K R+G+D E ++ AG ++H R + Sbjct: 122 CINSMVN--SCNIPVTAKTRIGFDQTEDFDYLNNFIHKMRDAGTKTFILHARKAMLTGLS 179 Query: 172 KEQGYRAEHIDWQAIGDI-RQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNI 230 +Q +++ + +I ++ + +I NG I + CD VMIGR Sbjct: 180 PKQNLNIPKLNYNMVYEIKKKNPELEIIINGGISKVSEIDNHLKF--CDGVMIGRSIYQN 237 Query: 231 PN----LSRVVKYNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARI-----------KQ 275 P + R + +VV L +Y E + T + H+ R K Sbjct: 238 PYSLIEIERDIFNTHNNPTREQVVEKLLEYADKEVKLGTKINHIMRHTVGLYHGQTGSKD 297 Query: 276 WLSYLRKEYDEATELFQHVRVL-NNSPDIARAIQA 309 W YL FQ + + + +AIQA Sbjct: 298 WKRYLSDNLMARESDFQKTKHIMTIVQNNEKAIQA 332 >UniRef50_C2KW54 Dihydrouridine synthase, DuS n=1 Tax=Oribacterium sinus F0268 RepID=C2KW54_9FIRM Length = 323 Score = 227 bits (580), Expect = 3e-58, Method: Composition-based stats. Identities = 70/318 (22%), Positives = 136/318 (42%), Gaps = 13/318 (4%) Query: 1 MRVLLAPMEGVLDSLVRELLTEVND-YDLCITEFVRVVDQLLPVKVFHRICPELQNASRT 59 M+ AP+E + +R + D + F+ ++ R C A Sbjct: 1 MKYYFAPLESITGYPLRNAHRALFPETDAYFSPFISSNEEGHYTGRIERDC-----AVEN 55 Query: 60 PSGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELI 119 +G ++ Q++G P+++ LG +LN GCPS TV G G+ +L+ P L+ Sbjct: 56 NNGLVLIPQIMGNRPEFVHATMKYMESLGYQECNLNLGCPSGTVVAKGKGSGMLRIPLLL 115 Query: 120 YQGAKAMREAV-PAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRA 178 + + + + + VS+K R+G ++ + E+ +E++VH RT++Q Y Sbjct: 116 EDFFQELFSLLKDSKMRVSIKTRIGLNTDGEWEELFAVFNHFPFSEIIVHPRTQKQYYSG 175 Query: 179 EHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAI-SGCDAVMIGRGALNIPNLSRVV 237 ++ +I + +P++ NG++ + +M GRG L+ P L R Sbjct: 176 R-VNLHCFQNICKYSKLPLVYNGDVETREDILFLQEQFPEIQGIMCGRGLLSNPALFREA 234 Query: 238 KYNEP--RMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVR 295 + + + E + L+++ E QG+ + +A+ K++ SY K Y + + VR Sbjct: 235 RGGKALQEGEFKEFLRLVEENFAKEIQGERNI--LAKYKEFWSYFAKSYQGGEKGLKEVR 292 Query: 296 VLNNSPDIARAIQAIDIE 313 N + A E Sbjct: 293 KAKNLAEYKAAKYRFFAE 310 >UniRef50_UPI000179183B PREDICTED: similar to tRNA-dihydrouridine synthase 4-like (PP35) n=1 Tax=Acyrthosiphon pisum RepID=UPI000179183B Length = 350 Score = 227 bits (580), Expect = 4e-58, Method: Composition-based stats. Identities = 75/306 (24%), Positives = 122/306 (39%), Gaps = 28/306 (9%) Query: 4 LLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGT 63 + APM R+L+ + DLC T + + K Sbjct: 20 ICAPMVRYSRLQFRKLIRMY-ECDLCFTPMIMADCYVKSAKARA------HEFQTDTDDR 72 Query: 64 LVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGA 123 + VQ NA+ + GVDLNCGCP + G GA LLK+PE+I Sbjct: 73 PLIVQFGANNSSDFV-NASNLIIPYCDGVDLNCGCPQRWALNEGYGAQLLKNPEIIKDCV 131 Query: 124 KAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHIDW 183 + +R +P + +SVK+RL D + ++ ++ G + + VHGRT Q + E ID Sbjct: 132 RQLRNHLPTNKTISVKLRL-LDDHRQSVDLCQQIEATGVSFITVHGRTALQ--KNEPIDQ 188 Query: 184 QAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNEPR 243 + + I + +++PVI NG+I + A +GC +M RG L+ P L + Sbjct: 189 ECLKLINESVSVPVILNGDIKNLSDAITMQEYTGCRGMMSARGILHNPGLFAGYQ----T 244 Query: 244 MPWPEVVALLQ-KYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNNSPD 302 P V L K+T L ++ + T + L + D Sbjct: 245 TPLSAVQDWLNIKHTNFLWFH-----------HHLVFMCERLLPKTA-RKTFNQLRTASD 292 Query: 303 IARAIQ 308 + ++ Sbjct: 293 VVSFLE 298 >UniRef50_B0GA01 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0GA01_9FIRM Length = 338 Score = 227 bits (579), Expect = 5e-58, Method: Composition-based stats. Identities = 74/339 (21%), Positives = 132/339 (38%), Gaps = 39/339 (11%) Query: 1 MRVLLAPMEGVLDSLVRELLTE-VNDYDLCITEF-VRVVDQLLPVKVFHRICPELQNASR 58 M+ LAP+EG+ + R + D T F V + K + + PE Sbjct: 1 MKYYLAPLEGITTYIYRRAYHQHFAPMDKYFTPFLVPHTKKGFSTKEKNDVMPE------ 54 Query: 59 TPSGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPEL 118 G + Q++ + G V+LN GCPSKTV G G+ L DP+ Sbjct: 55 HSPGMNLVPQIMSNQADSFLHTVEKLKVYGYEEVNLNLGCPSKTVVSKGRGSGFLADPDG 114 Query: 119 IYQGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRA 178 + + + + + +S+K R+G D E+ + D Q EL++H R ++ Y+ Sbjct: 115 LDRFLDEIFK--KCDVKISIKTRIGKDDPEEFARLLDIYNQYPVEELIIHPRVQKDFYKN 172 Query: 179 EHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQC-MAISGCDAVMIGRGALNIPNLSRVV 237 + + A D + IP+ NG+I+ +S ++ D M+GRG L P L ++ Sbjct: 173 QP-NLGAFHDAVEESKIPLCYNGDIFTPESYEEMKREFPQVDTFMLGRGILMNPALLDLI 231 Query: 238 KYNEPRM------------PWPEVVALLQKYTRLEKQ---------------GDTGLYHV 270 + E E +Q R +K+ G + Sbjct: 232 RMREKTDVKKTTDIDVTEWKKEETSRKMQSADRYKKEIHAFLEQIKCDYLEVGMGEKNTL 291 Query: 271 ARIKQWLSYLRKEYDEATELFQHVRVLNNSPDIARAIQA 309 ++K+ +Y+ + EA + + +R + D A + Sbjct: 292 FKLKELWAYMGQNAPEAKKALKRIRKSQSMADYDSASRE 330 >UniRef50_B1LWM8 TIM-barrel protein, nifR3 family n=1 Tax=Methylobacterium radiotolerans JCM 2831 RepID=B1LWM8_METRJ Length = 341 Score = 227 bits (578), Expect = 5e-58, Method: Composition-based stats. Identities = 90/279 (32%), Positives = 129/279 (46%), Gaps = 20/279 (7%) Query: 4 LLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGT 63 LLAP+ GV D +R + D I+E V + F R E + Sbjct: 27 LLAPLSGVTDLHMRRIARRCG-ADAVISEMVAA-------REFTRGSGEATLRAEGSGVD 78 Query: 64 LVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGA 123 L VQL G +AE A A G+ +D+N GCP+K V G G+ L++D + + Sbjct: 79 LHVVQLAGCEAGPMAEAARLAEAGGADVIDVNMGCPAKIVTGIASGSALMRDLDHAERLL 138 Query: 124 KAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRAEHID 182 ++R AV +PV+VK+RLGWD ++A ++ G + VHGRT++Q Y+ D Sbjct: 139 ASVRGAVS--IPVTVKMRLGWDDASRNAADLAARAERLGLNAVTVHGRTRQQFYKGR-AD 195 Query: 183 WQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNEP 242 W AI + ++IPVIANG++ D+ SA+ C+ SG VMIGR A P L V Sbjct: 196 WAAIRAVVAAVSIPVIANGDVTDFASARACLDASGAAGVMIGRAATGRPWLVGQVAAALT 255 Query: 243 RMPWPEVVALLQKYTRLEKQG--------DTGLYHVARI 273 P E Q E D G+ H + Sbjct: 256 GRPAAEPSRSEQAALAAEHYAGLLSLYGRDMGVRHARKH 294 >UniRef50_Q5KP54 Putative uncharacterized protein n=1 Tax=Filobasidiella neoformans RepID=Q5KP54_CRYNE Length = 610 Score = 227 bits (578), Expect = 5e-58, Method: Composition-based stats. Identities = 81/352 (23%), Positives = 128/352 (36%), Gaps = 49/352 (13%) Query: 2 RVLLAPMEGVLDSLVREL------------------------LTEVNDYDLCITEFVRVV 37 + ++APM + R L + +C T + Sbjct: 53 KFVVAPMVDQSELAWRLLSRSPLPPALAGPSETVTTPQGKAYIRHPGGAHVCYTPMIHAK 112 Query: 38 DQLLPVKVFHR------------ICPELQNASRTPSGTLVRVQLLGQFPQWLAENAARAV 85 + R E + VQ P L AA+ V Sbjct: 113 VFVDAKGEGGRNGDGQFCLSLDEEGGEGTIGGVEGGDRPLIVQFCANDPDILL-AAAKKV 171 Query: 86 ELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVSVKVRLGWD 145 E VD+N GCP G+ L + ELI++ + E + +PV+ K R+ + Sbjct: 172 EHRCDAVDINFGCPQGIAKRGHYGSFLQDEWELIHKLISTLHENLS--VPVTAKFRI-FP 228 Query: 146 SGEKKFEIADAVQQAGATELVVHGRTKEQ-GYRAEHIDWQAIGDIRQRLNIPVIANGEIW 204 +K A ++ AGA L HGRT+E G DW+ I ++++ + +PV ANG I Sbjct: 229 DLDKTIAYARMMEAAGAQILTCHGRTREMKGQNTGLADWEYIREVKKAVKVPVFANGNIL 288 Query: 205 DWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNEPRMPWPEVVALLQKYTRLEKQGD 264 + +CM ++GCD VM G L+ P + E P + L +Y + + D Sbjct: 289 YREDVDRCMEVTGCDGVMTAEGNLSNPAIF---MPPEHPHAHPPITVLAHRYLDIVEALD 345 Query: 265 TGLYHVARIKQWLSYLRK-EYDEATELFQHV---RVLNNSPDIARAIQAIDI 312 T + IK L L K D EL + R + I+ I+ Sbjct: 346 TP-TAGSAIKAHLFRLLKPVLDTDEELRVQIATCRWSDGMDGFREIIRDIER 396 >UniRef50_A9KG09 NIFR3-like protein n=6 Tax=Coxiella burnetii RepID=A9KG09_COXBN Length = 353 Score = 226 bits (577), Expect = 8e-58, Method: Composition-based stats. Identities = 79/330 (23%), Positives = 131/330 (39%), Gaps = 35/330 (10%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 R+ +APM G D R + +++ + L TE V LL K + +P Sbjct: 30 RISIAPMMGCTDRHFRMFMRQISRHVLLYTEMVT-TGALLKGKQWR-------CLDYSPE 81 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + +Q+ G PQ LA A A E G ++LN GCPS V GA LLK+ EL+ Sbjct: 82 EHPLALQVGGSDPQSLALCARLAEEKGFDEINLNVGCPSGRVTAGRFGACLLKEAELVAD 141 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKK---FEIADAVQQAGATELVVHGR-------T 171 AM V ++PVSVK R G D + + V +AG ++H R + Sbjct: 142 CVAAMSAEV--NIPVSVKTRTGVDDQDSYEHLYHFVKTVAEAGCRIFIIHARKAWLKGLS 199 Query: 172 KEQGYRAEHIDWQAIGDIRQRL-NIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNI 230 + + + + ++Q + +I NG I ++ + D VMIGR A Sbjct: 200 PAENRTVPPLAYPMVYQLKQDFPGLEIIINGGIKTIEAINDHLRE--VDGVMIGREAYAN 257 Query: 231 PN-----------LSRVVKYNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSY 279 P + + ++ + P LL+ + KQ G+ + + + L+ Sbjct: 258 PLFCAAFDDLSKPVFSLGVADKKQTPLTPKRVLLRYLPYMAKQLANGV-PLYAMTRHLNG 316 Query: 280 LRKEYDEATELFQHVRVLNNSPDIARAIQA 309 L + A + + + AI+ Sbjct: 317 LFQGQPGAKKWRRFLHENTRREGPIAAIEE 346 >UniRef50_D2VPP8 Predicted protein n=1 Tax=Naegleria gruberi RepID=D2VPP8_NAEGR Length = 427 Score = 226 bits (577), Expect = 8e-58, Method: Composition-based stats. Identities = 68/287 (23%), Positives = 118/287 (41%), Gaps = 24/287 (8%) Query: 4 LLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGT 63 + APM R L E D+ T + + D + + + + Sbjct: 127 VQAPMVRYSKLAFRLLCREYG-CDVVYTPMI-MSDCFHKSQKARD-----SDFTTHYYDS 179 Query: 64 LVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGA 123 + VQ P + A + G+DLNCGCP V GA L+ P+ I+ Sbjct: 180 PLVVQFAANNPTDFSL-ACQLAAPYCDGIDLNCGCPQPYVMKESLGAALVTKPQKIFDMV 238 Query: 124 KAMREAVPAHL--PVSVKVRLGWDSG----EKKFEIADAVQQAGATELVVHGRTKEQGYR 177 + + P+ VK+RL + K E+A ++ AGA+ + VHGRT +Q + Sbjct: 239 HEANNKFISGMSRPIGVKIRLHPEDDTLEFRKTIELARQIEMAGASWVTVHGRTHKQRTK 298 Query: 178 AEHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVV 237 ++ I+Q LN+PV+ NG+I+ + + +GCD VM RG L+ P L Sbjct: 299 NTKVNPDGPKTIKQILNVPVMHNGDIFTLGDSDRFAKETGCDGVMSARGLLSNPALFSGY 358 Query: 238 KYNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEY 284 Y +Q+Y ++ Q +H+ ++ + ++ + Sbjct: 359 DYVPFEC--------IQRYLQIAIQIGGVPFHI--LQHHIMFMLYSH 395 >UniRef50_A7NDQ7 tRNA dihydrouridine synthase n=17 Tax=Francisella RepID=A7NDQ7_FRATF Length = 327 Score = 226 bits (576), Expect = 1e-57, Method: Composition-based stats. Identities = 76/328 (23%), Positives = 131/328 (39%), Gaps = 29/328 (8%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 ++ +APM D R ++ + + + TE V + L K F P Sbjct: 7 KICIAPMLDWTDRHYRYMMRLITRHTMLYTEMVTLNAILHGNKEF--------LLKYNPQ 58 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 V +QL G P+ A EL +++N GCPS+ V G +L+ +PEL+ Sbjct: 59 ENPVTLQLGGCVPKDFISCGKLAEELDYNEININVGCPSERVKKGNFGLSLMAEPELVAD 118 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKKFE---IADAVQQAGATELVVHGR-------T 171 KAM++ + ++P+SVK R+G+D + E D QAG L +H R + Sbjct: 119 CVKAMKDNL--NIPISVKCRIGYDHNDSYEELYNFVDKQVQAGIDYLCIHARKGWLSGLS 176 Query: 172 KEQGYRAEHIDWQAIGDIRQRL-NIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNI 230 ++ + + + I++ N+ + NG I Q QQ + D+VMIGR A + Sbjct: 177 PKENRTIPELKYDVVYSIKKDFPNLELGINGGITTIQEIQQHLKY--VDSVMIGREAYHN 234 Query: 231 PNLSRVVKYNEPRMPWPEVVALLQKYTRLEKQGD----TGLYHVARIKQWLSYLRKEYDE 286 P L + P + AL Y E D + I + L Sbjct: 235 PMLFKDFDNIFYNQPTTNISALEIAYKMAEYIKDQMDNDPYIKLNNITKHTLNLFNGLPN 294 Query: 287 ATELFQHV--RVLNNSPDIARAIQAIDI 312 A +++ ++ + A+++ Sbjct: 295 AKVYRRYLSENATKKEANVDTFLTALEV 322 >UniRef50_B0EC90 tRNA-dihydrouridine synthase, putative n=2 Tax=Entamoeba RepID=B0EC90_ENTDI Length = 340 Score = 225 bits (575), Expect = 1e-57, Method: Composition-based stats. Identities = 75/310 (24%), Positives = 134/310 (43%), Gaps = 21/310 (6%) Query: 4 LLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGT 63 +LAPM D R L+ + +LC T V + + KV+ S P Sbjct: 26 ILAPMVDGSDLTFRILVRR-HGVNLCYTPMV-LSKMFVESKVYRNEVV----NSLDPKER 79 Query: 64 LVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGA 123 + +Q++G +A A +D+N GCP K GA L D + + Sbjct: 80 PIIIQVVGSDANEMARTAKFLQSY-CDAIDINLGCPQKIAQKGNYGAYLALDFDHTKEIV 138 Query: 124 KAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTK-EQGYRAEHID 182 A+ EAV ++PV KVR+ ++ +K + + +Q+ G + VHGRT E+ H Sbjct: 139 NAVIEAV--NIPVYCKVRV-FEDEDKTMKFVEMLQECGIWGIAVHGRTINEKQSMNYHAR 195 Query: 183 WQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNEP 242 W I I+++L IPVIANGE+ + ++C ++ D MIG G L P + + N Sbjct: 196 WNYIAKIKEQLKIPVIANGEMRSREKIEECKKVTHSDGYMIGFGLLMNPGMCEGIIDNNE 255 Query: 243 RMPWPEVVALLQKYTRLEKQG-DTGLYHVARIKQWL-SYLRKEYDEATELFQHVRVLNNS 300 + ++Y + + D L ++ +K L + + + +L + + + Sbjct: 256 --------QIAEEYINIVFEYKDKNLVRLSDVKGHLIKMMLYKIKQKKDLLKEIGEARSF 307 Query: 301 PDIARAIQAI 310 + ++ + Sbjct: 308 EECKTWLEKV 317 >UniRef50_B9M3C8 Dihydrouridine synthase DuS n=2 Tax=Desulfuromonadales RepID=B9M3C8_GEOSF Length = 306 Score = 225 bits (575), Expect = 1e-57, Method: Composition-based stats. Identities = 83/314 (26%), Positives = 143/314 (45%), Gaps = 17/314 (5%) Query: 4 LLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGT 63 +LAPM+GV + +R L E+ D TEF+RV ++ +L+ + Sbjct: 1 MLAPMQGVTNRAMRSLFIELVRPDTVFTEFIRVNAAAPVRRI---SAGDLKEMAAAEKDV 57 Query: 64 LVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGA 123 + VQL+G L A A G+ ++LN GCP + G LL+ PE++ + Sbjct: 58 PLVVQLIGHGRDALVSAAEAAQATGAIHINLNMGCPYGRMTSGPTGGGLLRHPEVLSEII 117 Query: 124 KAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHIDW 183 ++R + S+K+R G+D E+ + + A LV+H RT Q Y+ D Sbjct: 118 PSLRRVIKG--TFSLKMRAGYDDPEQILRLLPLFEAAKVDFLVLHPRTVLQQYQG-LADH 174 Query: 184 QAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNEPR 243 + + IPVIANG+I + Q + +G +M+GRGA+ P + + ++ + P Sbjct: 175 AITARVVRETEIPVIANGDIRTASAGLQLLEETGAAGLMLGRGAIADPFIFQRLRQSAPS 234 Query: 244 MP-WPEVVALLQKYT--RLEKQGD---TGLYHVARIKQWLSYLRKEYDEATELFQHVRVL 297 P + A+LQ Y L + G +A+IK+ L ++ L + V+ L Sbjct: 235 EPDQHDRSAMLQSYLLELLARYGKLFCGEAQVLAKIKEVLHFI-----NDPHLEKPVKRL 289 Query: 298 NNSPDIARAIQAID 311 + I + A++ Sbjct: 290 RKTKTIGAFVTALE 303 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P33371 tRNA-dihydrouridine synthase C n=160 Tax=Gammapr... 366 e-100 UniRef50_C9XSF8 tRNA-dihydrouridine synthase n=24 Tax=Clostridia... 356 7e-97 UniRef50_B3QWF2 TIM-barrel protein, nifR3 family n=26 Tax=Bacter... 343 6e-93 UniRef50_D2RLJ7 TIM-barrel protein, nifR3 family n=1 Tax=Acidami... 342 1e-92 UniRef50_C0WDP2 Putative uncharacterized protein n=1 Tax=Acidami... 341 2e-92 UniRef50_Q2LR94 TRNA-dihydrouridine synthase n=2 Tax=Deltaproteo... 338 2e-91 UniRef50_C4Z9L8 tRNA-dihydrouridine synthase n=26 Tax=Firmicutes... 337 3e-91 UniRef50_C8W3U6 TIM-barrel protein, nifR3 family n=8 Tax=Clostri... 334 3e-90 UniRef50_A9KHE5 TIM-barrel protein, nifR3 family n=2 Tax=Clostri... 334 4e-90 UniRef50_B9MMW4 TIM-barrel protein, nifR3 family n=3 Tax=Clostri... 333 5e-90 UniRef50_D1BLD4 TIM-barrel protein, nifR3 family n=12 Tax=cellul... 332 8e-90 UniRef50_C0GJW0 TIM-barrel protein, nifR3 family n=1 Tax=Dethiob... 331 2e-89 UniRef50_Q3A324 Dihydrouridine synthase n=10 Tax=Desulfuromonada... 329 6e-89 UniRef50_Q9CJW1 tRNA-dihydrouridine synthase C n=7 Tax=Gammaprot... 329 7e-89 UniRef50_B0VH62 Dihydrouridine synthase family protein n=1 Tax=C... 329 8e-89 UniRef50_A9NE09 tRNA-dihydrouridine synthase n=2 Tax=Mollicutes ... 328 2e-88 UniRef50_Q87N01 tRNA-dihydrouridine synthase C n=54 Tax=Gammapro... 326 7e-88 UniRef50_Q9KT00 tRNA-dihydrouridine synthase C n=75 Tax=Gammapro... 323 4e-87 UniRef50_B0S217 Nitrogen regulation protein n=3 Tax=Clostridiale... 322 9e-87 UniRef50_C1FNC8 Dihydrouridine synthase n=35 Tax=cellular organi... 322 1e-86 UniRef50_Q55724 Probable tRNA-dihydrouridine synthase 1 n=34 Tax... 321 2e-86 UniRef50_Q1ZGI3 NifR3/Smm1 family protein n=1 Tax=Psychromonas s... 321 2e-86 UniRef50_P37567 Probable tRNA-dihydrouridine synthase 1 n=19 Tax... 320 4e-86 UniRef50_B0TBQ2 Dihydrouridine synthase tim-barrel nifr3 family ... 318 1e-85 UniRef50_C7PIH0 TIM-barrel protein, nifR3 family n=7 Tax=Bactero... 318 2e-85 UniRef50_B7GFK6 tRNA-dihydrouridine synthase n=211 Tax=Bacteria ... 318 2e-85 UniRef50_B0SC53 tRNA-dihydrouridine synthase n=2 Tax=Leptospira ... 317 3e-85 UniRef50_Q1IVR5 Dihydrouridine synthase TIM-barrel protein nifR3... 316 5e-85 UniRef50_B8GCQ5 TIM-barrel protein, nifR3 family n=6 Tax=Chlorof... 316 7e-85 UniRef50_B2A3T5 TIM-barrel protein, nifR3 family n=1 Tax=Natrana... 316 7e-85 UniRef50_A0Q6L0 TRNA-dihydrouridine synthase n=19 Tax=Francisell... 314 3e-84 UniRef50_B3PD21 Dihydrouridine synthase family protein n=4 Tax=P... 314 3e-84 UniRef50_Q090Q9 TRNA-dihydrouridine synthase B n=2 Tax=Cystobact... 312 9e-84 UniRef50_C9KMX2 tRNA-dihydrouridine synthase n=3 Tax=Veillonella... 312 1e-83 UniRef50_Q6F288 TRNA dihydrouridine synthetase n=3 Tax=Mollicute... 312 2e-83 UniRef50_B8FGI4 TIM-barrel protein, nifR3 family n=1 Tax=Desulfa... 311 2e-83 UniRef50_C2KYD0 Dihydrouridine synthase n=4 Tax=Bacteria RepID=C... 311 2e-83 UniRef50_A0M6M9 TRNA-dihydrouridine synthase n=16 Tax=Bacteroide... 310 4e-83 UniRef50_C1A3V7 Putative tRNA-dihydrouridine synthase n=1 Tax=Ge... 310 6e-83 UniRef50_D2NNX0 tRNA-dihydrouridine synthase n=3 Tax=Actinobacte... 309 7e-83 UniRef50_C7RGQ7 TIM-barrel protein, nifR3 family n=4 Tax=Anaeroc... 308 2e-82 UniRef50_A6CBK4 Predicted TIM-barrel enzyme, possibly dehydrogen... 307 2e-82 UniRef50_Q9JUP6 tRNA-dihydrouridine synthase C n=23 Tax=Neisseri... 307 4e-82 UniRef50_C5TM05 tRNA-dihydrouridine synthase C n=5 Tax=Neisseria... 306 6e-82 UniRef50_C6JNK3 Dihydrouridine-tRNA ligase n=4 Tax=Fusobacterium... 306 6e-82 UniRef50_C1F4Z7 Putative tRNA-dihydrouridine synthase n=1 Tax=Ac... 306 6e-82 UniRef50_P44965 tRNA-dihydrouridine synthase B n=20 Tax=Pasteure... 305 1e-81 UniRef50_UPI0001BC5FF0 nitrogen regulation protein NIFR3 n=1 Tax... 305 1e-81 UniRef50_Q1RH84 Probable tRNA-dihydrouridine synthase n=59 Tax=A... 304 2e-81 UniRef50_Q1NXZ7 Dihydrouridine synthase TIM-barrel protein nifR3... 304 3e-81 UniRef50_Q6MRF1 Transcription regulator homolog yacF n=1 Tax=Bde... 303 7e-81 UniRef50_A8ZYE4 Putative TIM-barrel protein, nifR3 family n=1 Ta... 302 8e-81 UniRef50_Q31II6 Dihydrouridine synthase n=1 Tax=Thiomicrospira c... 302 1e-80 UniRef50_Q9KV66 tRNA-dihydrouridine synthase B n=56 Tax=Proteoba... 302 1e-80 UniRef50_C1ZDL9 Putative TIM-barrel protein, nifR3 family n=1 Ta... 300 3e-80 UniRef50_Q2RZL4 NifR3 family enzyme n=2 Tax=Rhodothermaceae RepI... 300 4e-80 UniRef50_A7H1K2 tRNA-dihydrouridine synthase B n=14 Tax=Campylob... 300 6e-80 UniRef50_B8DSX5 Possible NifR3-like protein n=15 Tax=Bifidobacte... 299 7e-80 UniRef50_A7S213 Predicted protein n=1 Tax=Nematostella vectensis... 299 8e-80 UniRef50_D2RA64 TIM-barrel protein, nifR3 family n=5 Tax=Actinob... 298 1e-79 UniRef50_B9L781 tRNA-dihydrouridine synthase B n=1 Tax=Nautilia ... 298 1e-79 UniRef50_D2U2K4 tRNA-dihydrouridine synthase B n=1 Tax=Arsenopho... 298 1e-79 UniRef50_D1NSS9 Putative tRNA-dihydrouridine synthase n=1 Tax=Bi... 298 1e-79 UniRef50_Q1Q3Q8 Strongly similar to tRNA-dihydrouridine synthase... 298 1e-79 UniRef50_A6DCX2 tRNA-dihydrouridine synthase B n=1 Tax=Caminibac... 298 1e-79 UniRef50_Q2RM54 Dihydrouridine synthase TIM-barrel protein nifR3... 298 2e-79 UniRef50_Q88LF2 tRNA-dihydrouridine synthase C n=38 Tax=cellular... 297 2e-79 UniRef50_Q88DK5 tRNA-dihydrouridine synthase B n=460 Tax=Proteob... 297 3e-79 UniRef50_B1C9Q3 Putative uncharacterized protein n=1 Tax=Anaerof... 297 3e-79 UniRef50_A3JG66 Putative uncharacterized protein n=3 Tax=Gammapr... 297 3e-79 UniRef50_D0LJX3 TIM-barrel protein, nifR3 family n=1 Tax=Haliang... 297 4e-79 UniRef50_Q1N033 Putative uncharacterized protein n=1 Tax=Bermane... 296 6e-79 UniRef50_Q0BSS6 tRNA-dihydrouridine synthase n=15 Tax=Alphaprote... 296 6e-79 UniRef50_C0W327 Dihydrouridine synthase n=2 Tax=Actinomyces RepI... 296 9e-79 UniRef50_Q9RDC6 Putative uncharacterized protein SCO2497 n=4 Tax... 295 1e-78 UniRef50_C0QKE4 Dhs2 n=1 Tax=Desulfobacterium autotrophicum HRM2... 295 1e-78 UniRef50_B1ZWU6 TIM-barrel protein, nifR3 family n=6 Tax=Verruco... 295 1e-78 UniRef50_A6NW05 Putative uncharacterized protein n=1 Tax=Bactero... 295 1e-78 UniRef50_Q5M689 Possible transcriptional regulator n=25 Tax=Stre... 295 2e-78 UniRef50_D0L1E3 TIM-barrel protein, nifR3 family n=1 Tax=Halothi... 295 2e-78 UniRef50_B9JF02 tRNA-dihydrouridine synthase protein n=12 Tax=Al... 295 2e-78 UniRef50_B6W908 Putative uncharacterized protein n=1 Tax=Anaeroc... 294 3e-78 UniRef50_A9A4W7 Putative TIM-barrel protein, nifR3 family n=1 Ta... 294 3e-78 UniRef50_B2ULM0 TIM-barrel protein, nifR3 family n=3 Tax=Verruco... 294 3e-78 UniRef50_Q8PX79 NifR3-like protein n=3 Tax=Methanosarcina RepID=... 294 3e-78 UniRef50_C5WE57 tRNA-dihydrouridine synthase n=42 Tax=Streptococ... 294 3e-78 UniRef50_C8WHM7 TIM-barrel protein, nifR3 family n=2 Tax=Corioba... 294 3e-78 UniRef50_D0NNQ3 tRNA-dihydrouridine synthase, putative n=1 Tax=P... 293 5e-78 UniRef50_Q0F181 Dihydrouridine synthase TIM-barrel protein nifR3... 293 6e-78 UniRef50_Q5CSA9 Dus1p, tRNA dihydrouridine synthase (Fragment) n... 293 7e-78 UniRef50_C6C170 Dihydrouridine synthase DuS n=1 Tax=Desulfovibri... 292 1e-77 UniRef50_Q6AJZ5 tRNA-dihydrouridine synthase n=1 Tax=Desulfotale... 292 1e-77 UniRef50_D0WEP2 tRNA-dihydrouridine synthase B n=2 Tax=Slackia R... 292 1e-77 UniRef50_D1VTQ2 Probable tRNA-dihydrouridine synthase n=1 Tax=Pe... 292 1e-77 UniRef50_C9LMP9 tRNA-dihydrouridine synthase n=1 Tax=Dialister i... 292 1e-77 UniRef50_Q5FMA1 Transcriptional regulator n=14 Tax=Firmicutes Re... 292 1e-77 UniRef50_A6DPY9 Putative uncharacterized protein n=1 Tax=Lentisp... 291 2e-77 UniRef50_Q884C6 tRNA-dihydrouridine synthase C n=13 Tax=Proteoba... 291 2e-77 UniRef50_A5FL15 tRNA-dihydrouridine synthase B-like protein n=14... 291 3e-77 UniRef50_UPI000058804E PREDICTED: similar to MGC53781 protein n=... 291 3e-77 UniRef50_A0LJ96 Putative TIM-barrel protein, nifR3 family n=1 Ta... 290 4e-77 UniRef50_D1R8P9 Putative uncharacterized protein n=1 Tax=Parachl... 290 5e-77 UniRef50_A1VHK2 Dihydrouridine synthase, DuS n=10 Tax=Desulfovib... 290 5e-77 UniRef50_UPI000194DF67 PREDICTED: dihydrouridine synthase 3-like... 290 6e-77 UniRef50_Q6SFW7 NifR3/Smm1 family protein n=1 Tax=uncultured mar... 289 7e-77 UniRef50_Q127F8 Dihydrouridine synthase, DuS n=7 Tax=Proteobacte... 289 7e-77 UniRef50_D0U4P6 tRNA-dihydrouridine synthase n=2 Tax=uncultured ... 289 8e-77 UniRef50_A4BCJ5 NifR3/Smm1 family protein n=1 Tax=Reinekea bland... 289 8e-77 UniRef50_C8X244 Dihydrouridine synthase DuS n=1 Tax=Desulfohalob... 289 9e-77 UniRef50_Q54XQ6 tRNA-dihydrouridine synthase 1-like protein n=1 ... 289 9e-77 UniRef50_C4QMR1 tRNA-dihydrouridine synthase, putative n=1 Tax=S... 289 9e-77 UniRef50_C1SJZ7 tRNA-dihydrouridine synthase n=1 Tax=Denitrovibr... 288 2e-76 UniRef50_Q21L63 Dihydrouridine synthase, DuS n=1 Tax=Saccharopha... 288 2e-76 UniRef50_A7I0T0 NifR3 family protein n=9 Tax=Epsilonproteobacter... 288 2e-76 UniRef50_Q47C15 Dihydrouridine synthase, DuS n=1 Tax=Dechloromon... 287 3e-76 UniRef50_Q14SX5 Putative dihydrouridine synthase n=6 Tax=Clostri... 287 3e-76 UniRef50_Q7ZWS1 tRNA-dihydrouridine synthase 3-like n=3 Tax=Xeno... 287 3e-76 UniRef50_Q2RTR9 Dihydrouridine synthase TIM-barrel protein nifR3... 287 5e-76 UniRef50_B1GZV7 Putative tRNA-dihydrouridine synthase n=1 Tax=un... 287 5e-76 UniRef50_D1AZV6 Dihydrouridine synthase DuS n=7 Tax=Campylobacte... 286 6e-76 UniRef50_Q3AZ67 Dihydrouridine synthase TIM-barrel protein nifR3... 286 6e-76 UniRef50_B9JW92 Nitrogen regulation protein n=4 Tax=Rhizobiales ... 285 1e-75 UniRef50_A6BZR9 Predicted TIM-barrel enzyme, possibly dehydrogen... 285 1e-75 UniRef50_Q2IG49 Dihydrouridine synthase TIM-barrel protein nifR3... 285 2e-75 UniRef50_UPI00006A5AE6 PREDICTED: similar to PP3111 protein n=1 ... 285 2e-75 UniRef50_B3RKU4 Putative uncharacterized protein n=2 Tax=Metazoa... 285 2e-75 UniRef50_Q6P1R4 tRNA-dihydrouridine synthase 1-like n=12 Tax=Eut... 285 2e-75 UniRef50_P41504 Probable tRNA-dihydrouridine synthase n=93 Tax=A... 284 3e-75 UniRef50_A4AAB0 tRNA-dihydrouridine synthase C n=6 Tax=Gammaprot... 284 3e-75 UniRef50_D0J1P6 Dihydrouridine synthase, DuS n=7 Tax=cellular or... 284 3e-75 UniRef50_D1AWB1 Dihydrouridine synthase DuS n=12 Tax=Fusobacteri... 283 4e-75 UniRef50_Q9VPM1 CG3645, isoform A n=9 Tax=Diptera RepID=Q9VPM1_D... 283 5e-75 UniRef50_UPI0000D52F94 Dihydrouridine synthase TIM-barrel protei... 283 7e-75 UniRef50_C7GZ00 tRNA-dihydrouridine synthase n=1 Tax=Eubacterium... 282 8e-75 UniRef50_UPI000186DAF4 tRNA-dihydrouridine synthase, putative n=... 282 1e-74 UniRef50_C3MBL4 tRNA-dihydrouridine synthase n=1 Tax=Rhizobium s... 282 1e-74 UniRef50_C7LQM9 Dihydrouridine synthase DuS n=2 Tax=Desulfovibri... 282 1e-74 UniRef50_C8W6Y9 TIM-barrel protein, nifR3 family n=1 Tax=Atopobi... 281 2e-74 UniRef50_C0QXB6 Dihydrouridine synthase-like (DUS-like) FMN-bind... 280 4e-74 UniRef50_B9NQS6 NifR3 family protein n=3 Tax=Rhodobacteraceae Re... 280 7e-74 UniRef50_O67533 Probable tRNA-dihydrouridine synthase n=1 Tax=Aq... 279 8e-74 UniRef50_Q6A959 TIM-barrel enzyme, NifR3 family n=2 Tax=Propioni... 279 9e-74 UniRef50_A0EG06 Chromosome undetermined scaffold_94, whole genom... 278 1e-73 UniRef50_B5X496 tRNA-dihydrouridine synthase 3-like n=3 Tax=Euka... 278 1e-73 UniRef50_UPI00017B0A55 UPI00017B0A55 related cluster n=1 Tax=Tet... 278 1e-73 UniRef50_UPI0001BCCF0E nifR3 family TIM-barrel protein n=1 Tax=A... 278 2e-73 UniRef50_A6W1E8 Dihydrouridine synthase DuS n=1 Tax=Marinomonas ... 278 2e-73 UniRef50_Q96G46 tRNA-dihydrouridine synthase 3-like n=17 Tax=Coe... 278 2e-73 UniRef50_P53759 tRNA-dihydrouridine synthase 1 n=19 Tax=Ascomyco... 278 2e-73 UniRef50_A9BIR6 Dihydrouridine synthase DuS n=1 Tax=Petrotoga mo... 278 2e-73 UniRef50_Q54CU9 tRNA-dihydrouridine synthase 3-like n=1 Tax=Dict... 278 2e-73 UniRef50_D1U4K9 Dihydrouridine synthase DuS n=1 Tax=Desulfovibri... 277 3e-73 UniRef50_A8N483 Putative uncharacterized protein n=2 Tax=Agarica... 277 3e-73 UniRef50_C5CI99 Dihydrouridine synthase DuS n=1 Tax=Kosmotoga ol... 277 6e-73 UniRef50_Q91XI1 tRNA-dihydrouridine synthase 3-like n=12 Tax=Cho... 276 6e-73 UniRef50_O53835 Probable tRNA-dihydrouridine synthase n=107 Tax=... 276 8e-73 UniRef50_Q9ZLB6 Probable tRNA-dihydrouridine synthase n=23 Tax=E... 276 8e-73 UniRef50_A0Z0J5 TRNA-dihydrouridine synthase B n=2 Tax=unclassif... 275 1e-72 UniRef50_A9GW95 Dihydrouridine synthase TIM-barrel protein nifR3... 275 1e-72 UniRef50_C4VA23 Putative uncharacterized protein n=1 Tax=Nosema ... 275 1e-72 UniRef50_A5EVV4 Dihydrouridine synthase n=2 Tax=Cardiobacteriace... 275 2e-72 UniRef50_B9ZKT6 TIM-barrel protein, nifR3 family n=1 Tax=Thioalk... 275 2e-72 UniRef50_UPI000180C543 PREDICTED: similar to dihydrouridine synt... 274 2e-72 UniRef50_C1E1T8 Predicted protein n=1 Tax=Micromonas sp. RCC299 ... 274 3e-72 UniRef50_D2R6Z1 TIM-barrel protein, nifR3 family n=3 Tax=Plancto... 273 4e-72 UniRef50_C1ZB06 tRNA-dihydrouridine synthase n=1 Tax=Planctomyce... 273 5e-72 UniRef50_Q12U52 tRNA-dihydrouridine synthase n=2 Tax=Archaea Rep... 273 6e-72 UniRef50_B6YQB2 tRNA-dihydrouridine synthase n=36 Tax=Bacteria R... 273 7e-72 UniRef50_A7BE39 Putative uncharacterized protein n=1 Tax=Actinom... 272 2e-71 UniRef50_Q4FQ57 Possible tRNA-dihydrouridine synthase n=24 Tax=G... 271 3e-71 UniRef50_C5DS92 ZYRO0B14872p n=1 Tax=Zygosaccharomyces rouxii Re... 270 3e-71 UniRef50_B0S913 tRNA-dihydrouridine synthase n=7 Tax=Leptospira ... 270 3e-71 UniRef50_Q256J2 Dehydrogenases n=13 Tax=Chlamydiaceae RepID=Q256... 270 4e-71 UniRef50_A4EC62 Putative uncharacterized protein n=3 Tax=Collins... 270 5e-71 UniRef50_Q30WR3 Dihydrouridine synthase family protein n=3 Tax=D... 269 8e-71 UniRef50_C6XJQ7 Dihydrouridine synthase DuS n=2 Tax=Hyphomonadac... 268 2e-70 UniRef50_B7PPV8 tRNA-dihydrouridine synthase, putative n=1 Tax=I... 268 2e-70 UniRef50_Q54ES7 tRNA-dihydrouridine synthase 4-like protein n=1 ... 267 3e-70 UniRef50_Q582L4 TRNA-dihydrouridine synthase 3, putative n=5 Tax... 267 3e-70 UniRef50_Q9VIS4 CG10463 n=12 Tax=Drosophila RepID=Q9VIS4_DROME 267 4e-70 UniRef50_C1E909 tRNA-dihydrouridine synthase (Fragment) n=2 Tax=... 267 5e-70 UniRef50_B8HFM3 TIM-barrel protein, nifR3 family n=4 Tax=Actinom... 267 5e-70 UniRef50_C2D6C5 Possible tRNA-dihydrouridine synthase n=1 Tax=At... 266 8e-70 UniRef50_Q010A0 tRNA-dihydrouridine synthase (ISS) n=2 Tax=Mamie... 266 9e-70 UniRef50_A8NZY7 tRNA-dihydrouridine synthase 3 n=2 Tax=Agaricale... 266 9e-70 UniRef50_Q4P1U2 tRNA-dihydrouridine synthase 3 n=4 Tax=Eukaryota... 265 1e-69 UniRef50_A4RQU5 Predicted protein n=2 Tax=Ostreococcus RepID=A4R... 265 1e-69 UniRef50_Q7PVV7 AGAP009171-PA (Fragment) n=3 Tax=Endopterygota R... 265 1e-69 UniRef50_Q17M24 tRNA-dihydrouridine synthase n=2 Tax=Diptera Rep... 265 2e-69 UniRef50_C9RMP3 Dihydrouridine synthase DuS n=1 Tax=Fibrobacter ... 265 2e-69 UniRef50_C7H613 tRNA-dihydrouridine synthase n=3 Tax=Ruminococca... 264 2e-69 UniRef50_A7HK00 Dihydrouridine synthase DuS n=8 Tax=Thermotogace... 264 3e-69 UniRef50_Q4PG83 Putative uncharacterized protein n=2 Tax=Ustilag... 264 4e-69 UniRef50_B0UHM8 TIM-barrel protein, nifR3 family n=6 Tax=Rhizobi... 263 5e-69 UniRef50_C1ZGV0 tRNA-dihydrouridine synthase n=1 Tax=Planctomyce... 263 5e-69 UniRef50_Q1J2A4 Dihydrouridine synthase, DuS n=3 Tax=Deinococcus... 262 9e-69 UniRef50_UPI0001792282 PREDICTED: similar to tRNA-dihydrouridine... 262 9e-69 UniRef50_Q5KP54 Putative uncharacterized protein n=1 Tax=Filobas... 262 1e-68 UniRef50_D1AII6 Dihydrouridine synthase DuS n=1 Tax=Sebaldella t... 262 1e-68 UniRef50_B9XLX7 Dihydrouridine synthase DuS n=3 Tax=Verrucomicro... 262 2e-68 UniRef50_C5F231 Putative uncharacterized protein n=2 Tax=Helicob... 262 2e-68 UniRef50_A8QBG9 PP3111 protein, putative n=1 Tax=Brugia malayi R... 261 2e-68 UniRef50_Q8SUV4 Putative uncharacterized protein ECU07_1610 n=1 ... 261 3e-68 UniRef50_Q9FH91 Gb|AAF51525.1 n=7 Tax=Viridiplantae RepID=Q9FH91... 260 4e-68 UniRef50_Q1QZQ6 Dihydrouridine synthase, DuS n=1 Tax=Chromohalob... 260 5e-68 UniRef50_O95620 tRNA-dihydrouridine synthase 4-like n=40 Tax=Met... 260 6e-68 UniRef50_A8F480 Dihydrouridine synthase DuS n=1 Tax=Thermotoga l... 259 8e-68 UniRef50_Q5KC68 tRNA-dihydrouridine synthase 3 n=2 Tax=Filobasid... 259 8e-68 UniRef50_Q7X346 Putative uncharacterized protein n=1 Tax=uncultu... 259 1e-67 UniRef50_Q7QCT0 AGAP002791-PA (Fragment) n=3 Tax=Culicidae RepID... 258 1e-67 UniRef50_D2VPP8 Predicted protein n=1 Tax=Naegleria gruberi RepI... 258 1e-67 UniRef50_B8FH09 Dihydrouridine synthase DuS n=1 Tax=Desulfatibac... 258 2e-67 UniRef50_Q2SJJ8 TRNA-dihydrouridine synthase n=7 Tax=Gammaproteo... 257 3e-67 UniRef50_B9HRE5 Predicted protein (Fragment) n=11 Tax=Eukaryota ... 257 6e-67 UniRef50_Q6AKJ6 Putative uncharacterized protein n=1 Tax=Desulfo... 256 7e-67 UniRef50_UPI00015B403F PREDICTED: similar to MGC79829 protein n=... 256 7e-67 UniRef50_Q72EB7 Dihydrouridine synthase family protein n=4 Tax=D... 256 8e-67 UniRef50_A9KG09 NIFR3-like protein n=6 Tax=Coxiella burnetii Rep... 256 1e-66 UniRef50_Q9VJ06 CG10495 n=12 Tax=Drosophila RepID=Q9VJ06_DROME 255 1e-66 UniRef50_A6DU09 Dihydrouridine synthase family protein n=1 Tax=L... 255 1e-66 UniRef50_Q9HGN6 tRNA-dihydrouridine synthase 1 n=1 Tax=Schizosac... 255 1e-66 UniRef50_B8C4H3 Predicted protein (Fragment) n=1 Tax=Thalassiosi... 255 2e-66 UniRef50_UPI000179183B PREDICTED: similar to tRNA-dihydrouridine... 255 2e-66 UniRef50_A6GHV6 Dihydrouridine synthase family protein n=1 Tax=P... 255 2e-66 UniRef50_B7G230 Predicted protein (Fragment) n=1 Tax=Phaeodactyl... 254 2e-66 UniRef50_A4S141 Predicted protein (Fragment) n=1 Tax=Ostreococcu... 254 4e-66 UniRef50_Q4DCG2 Putative uncharacterized protein n=2 Tax=Trypano... 253 5e-66 UniRef50_UPI000186DA49 tRNA-dihydrouridine synthase, putative n=... 253 7e-66 UniRef50_Q9XVN8 Protein F36A2.2, partially confirmed by transcri... 252 1e-65 UniRef50_B8GW86 tRNA-dihydrouridine synthase n=7 Tax=Alphaproteo... 252 1e-65 UniRef50_B1XI00 Dihydrouridine synthase A n=8 Tax=Chroococcales ... 251 2e-65 UniRef50_Q8CWK7 tRNA-dihydrouridine synthase A n=32 Tax=Gammapro... 251 2e-65 UniRef50_D2VK62 Dihydrouridine synthase, DuS n=1 Tax=Naegleria g... 251 2e-65 UniRef50_A3VWV8 TRNA-dihydrouridine synthase, putative n=4 Tax=R... 251 3e-65 UniRef50_D0LY25 TIM-barrel protein, yjbN family n=3 Tax=Bacteria... 251 3e-65 UniRef50_B9K738 TIM-barrel protein, nifR3 family n=1 Tax=Thermot... 250 4e-65 UniRef50_A8PTG4 tRNA-dihydrouridine synthase 3 n=1 Tax=Malassezi... 250 5e-65 UniRef50_D2VPF2 Predicted protein n=2 Tax=Naegleria gruberi RepI... 250 5e-65 UniRef50_B3LAS6 tRNA-dihydrouridine synthase, putative n=6 Tax=P... 250 5e-65 UniRef50_Q9T0J6 tRNA-dihydrouridine synthase 3-like n=10 Tax=Mag... 250 5e-65 UniRef50_Q5ZRM0 Nitrogen regulation protein n=6 Tax=Legionella R... 250 7e-65 UniRef50_UPI0001C3129C dihydrouridine synthase DuS n=1 Tax=Conex... 249 8e-65 UniRef50_A7AQM0 Dihydrouridine synthase, putative n=1 Tax=Babesi... 249 1e-64 UniRef50_Q3MB47 Dihydrouridine synthase, DuS n=6 Tax=Bacteria Re... 249 1e-64 UniRef50_Q8EAJ0 tRNA-dihydrouridine synthase A n=121 Tax=Bacteri... 249 1e-64 UniRef50_Q5HJT5 Probable tRNA-dihydrouridine synthase n=92 Tax=F... 248 1e-64 UniRef50_B1ZZ77 Dihydrouridine synthase DuS n=2 Tax=Opitutaceae ... 248 2e-64 UniRef50_B2V534 Dihydrouridine synthase family protein n=29 Tax=... 247 3e-64 UniRef50_A7NDQ7 tRNA dihydrouridine synthase n=17 Tax=Francisell... 247 4e-64 UniRef50_O31546 Probable tRNA-dihydrouridine synthase 2 n=107 Ta... 247 4e-64 Sequences not found previously or not previously below threshold: >UniRef50_P33371 tRNA-dihydrouridine synthase C n=160 Tax=Gammaproteobacteria RepID=DUSC_ECOLI Length = 315 Score = 366 bits (939), Expect = e-100, Method: Composition-based stats. Identities = 315/315 (100%), Positives = 315/315 (100%) Query: 1 MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTP 60 MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTP Sbjct: 1 MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTP 60 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY Sbjct: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH Sbjct: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN Sbjct: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 Query: 241 EPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNNS 300 EPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNNS Sbjct: 241 EPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNNS 300 Query: 301 PDIARAIQAIDIEKL 315 PDIARAIQAIDIEKL Sbjct: 301 PDIARAIQAIDIEKL 315 >UniRef50_C9XSF8 tRNA-dihydrouridine synthase n=24 Tax=Clostridia RepID=C9XSF8_CLODC Length = 322 Score = 356 bits (914), Expect = 7e-97, Method: Composition-based stats. Identities = 79/314 (25%), Positives = 148/314 (47%), Gaps = 17/314 (5%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 +V L+PM GV D R + E L TE + + + Sbjct: 11 KVFLSPMAGVTDLPFRLICKEQG-CGLLYTEMINGKALCYDDENTKK------MLKIEEE 63 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 V VQ+ G P+++ A + + +D+N GCP+ V +G G+ L+K+P+L + Sbjct: 64 EHPVAVQIFGSEPEFMGRAAEIMNDYSNEILDINMGCPAPKVVKNGDGSALMKNPKLAEE 123 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 +A+ + + PV++K+R GWD EIA + G + L +HGRT+EQ Y + Sbjct: 124 VLRAVVKN--SKKPVTLKIRKGWDDNSVNAVEIAKIAEDCGISALAIHGRTREQFYTGK- 180 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 DW I +I++ L+IPVI NG+++ + + + +GCDA+MIGRGA P + + + + Sbjct: 181 ADWDIIAEIKKNLSIPVIGNGDVFTIEDSINMLDKTGCDAIMIGRGAQGNPWIFKRINHY 240 Query: 241 ------EPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHV 294 P E ++ K+ +L + V +++ +++ K + +L + Sbjct: 241 MNTGEILPEPTLNEKISTAIKHLKLAVEEHGEYVAVREMRKHIAWYLKGLRNSAKLRDEI 300 Query: 295 RVLNNSPDIARAIQ 308 + + ++ ++ Sbjct: 301 NKIEDYQEVVSKLE 314 >UniRef50_B3QWF2 TIM-barrel protein, nifR3 family n=26 Tax=Bacteroidetes/Chlorobi group RepID=B3QWF2_CHLT3 Length = 402 Score = 343 bits (880), Expect = 6e-93, Method: Composition-based stats. Identities = 91/318 (28%), Positives = 146/318 (45%), Gaps = 17/318 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 V+LAPME V D R L D+ TEF+ + R Sbjct: 56 VILAPMEDVTDPSFRRLCKHYG-ADIVFTEFISSDGLIRHAVKSKRKLDVFD------DE 108 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 V +Q+ G + + E A A G +D+N GCP+K V G G G+ LL P+L+ + Sbjct: 109 RPVAIQIFGNQIEPMVEAAQMAEAAGPDFIDINYGCPAKKVAGKGAGSGLLCQPDLMEKI 168 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGEK-KFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 A+ +AV LPV+ K R+GWD + ++ G L +HGRT+ Q Y+ Sbjct: 169 TDAVVKAV--RLPVTAKTRIGWDERSISILDTVRRLEGCGIQALSIHGRTRAQMYKGR-A 225 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY-- 239 DW I ++ IP+I NG+IW + A++ +G D VMIGRGA+ P L R K+ Sbjct: 226 DWSWIARAKEVATIPIIGNGDIWTAEDAKRMFDETGVDGVMIGRGAIGNPFLFREAKHLI 285 Query: 240 ----NEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVR 295 + P+ E VA+ ++ + + Y V +++ S K +++ ++ Sbjct: 286 QTGEHLPQATHRERVAVAIRHLEMSLERKGEKYGVLEMRRHYSTYLKGLPNVSKVRDYLV 345 Query: 296 VLNNSPDIARAIQAIDIE 313 N+ I A++ ++E Sbjct: 346 RENDPNLIVEALRRFEVE 363 >UniRef50_D2RLJ7 TIM-barrel protein, nifR3 family n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RLJ7_ACIFE Length = 331 Score = 342 bits (877), Expect = 1e-92, Method: Composition-based stats. Identities = 85/307 (27%), Positives = 132/307 (42%), Gaps = 16/307 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 + LAPM GV D R + E+ D ++E V L P Sbjct: 19 IALAPMAGVTDLPFRVICRELG-ADYTVSEMVSAKALLFKNPKT------FAMLEVDPRE 71 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 V +QL G P+ L + A E G+ +D N GCP + +G G+ L+KDPE Y Sbjct: 72 HPVAIQLFGSVPEELVKGAKIVAEHGADIIDFNMGCPVHKIVANGEGSALMKDPERAYAC 131 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 A+ +AV PV+VK R GWD EIA ++AG + VHGRT+ Q Y + Sbjct: 132 LAALVDAV--DRPVTVKFRAGWDEDHRNAVEIARLAEKAGVAAVAVHGRTRGQFYSGK-A 188 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY-- 239 DW I +++ ++IPV+ NG+++ Q A +A + CD VMI RGA P + R V+ Sbjct: 189 DWDIIRQVKEAVSIPVLGNGDVFTAQDALDLLAATHCDGVMIARGAQGNPWIFREVQAVL 248 Query: 240 ---NEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRV 296 P + E A+++++ R + ++ + + + Sbjct: 249 AGKTIPPVTLEERFAMVRRHLRDLTAFKGEKVAIREMRHHGACYFTGLPHSAHYRNAINQ 308 Query: 297 LNNSPDI 303 Sbjct: 309 CLTKEAF 315 >UniRef50_C0WDP2 Putative uncharacterized protein n=1 Tax=Acidaminococcus sp. D21 RepID=C0WDP2_9FIRM Length = 321 Score = 341 bits (876), Expect = 2e-92, Method: Composition-based stats. Identities = 87/319 (27%), Positives = 139/319 (43%), Gaps = 17/319 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 V+LAPM GV D R + E N D ++E V L + + P Sbjct: 11 VVLAPMAGVTDLPFRVICRE-NGADYTVSEMVSAKALLYKNQKT------FAMLTIDPKE 63 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 +QL G P LA G+ +D+N GCP + +G G+ L+KDP+ +Y Sbjct: 64 HPTAIQLFGSVPSELAAAGKIVESRGADMIDVNMGCPVHKIVSNGEGSALMKDPDKVYAI 123 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGEKKFE-IADAVQQAGATELVVHGRTKEQGYRAEHI 181 A+ +AV +PV+VK R GWD K IA ++AG + + VHGRT+ Q Y+ + Sbjct: 124 LAALVDAVS--IPVTVKFRAGWDEAHKNAAVIAQMAEKAGVSAVCVHGRTRAQFYQGK-A 180 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNE 241 DW I +++ + IPV+ NG+I+ + A + +GCD VMI RGA P + R VK Sbjct: 181 DWDIIRAVKESVGIPVLGNGDIFHAEDALRMKEETGCDGVMIARGAEGNPWIFRDVKALL 240 Query: 242 P-----RMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRV 296 + E A+++++ V ++ + + + Sbjct: 241 HGKAISPVSVQERFAMIRRHLHDLILFKGERVGVREMRHHGAMYLTGLPHSAYYRNTINQ 300 Query: 297 LNNSPDIARAIQAIDIEKL 315 + + + EKL Sbjct: 301 AQTEEALLAVLGEYE-EKL 318 >UniRef50_Q2LR94 TRNA-dihydrouridine synthase n=2 Tax=Deltaproteobacteria RepID=Q2LR94_SYNAS Length = 326 Score = 338 bits (867), Expect = 2e-91, Method: Composition-based stats. Identities = 87/319 (27%), Positives = 139/319 (43%), Gaps = 17/319 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 V+LAPM G+ + R + E L TE + + I Q Sbjct: 13 VILAPMAGISNLPFRMMAREAG-CALAFTEMISANGLVRG------IEKSQQYMKSCIDD 65 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 + VQ+ G P +A+ + G+ +DLN GCP K V +G GA LLKDP L+ Q Sbjct: 66 KPLGVQIFGNDPTTMADAVRIVDDYGADLIDLNMGCPVKKVVKNGAGAALLKDPGLVSQI 125 Query: 123 AKAMREAVPAHLPVSVKVRLGWD-SGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 +++R+A P++VK+R GW+ +IA +Q G + VH RT QG+ Sbjct: 126 LESVRKA--TRKPLTVKIRSGWNLQSINAVQIARIAEQQGIDAVFVHARTAVQGFAG-SA 182 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN- 240 DW+ I +I+ + I VI NG++ A + + ++GCD VMIGRGAL P + Sbjct: 183 DWRIIEEIKNSVGIKVIGNGDVKSGADAWRMIKMTGCDGVMIGRGALGNPWIFNEALNYQ 242 Query: 241 -----EPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVR 295 E ++ ++ E V R ++ L + K V Sbjct: 243 STVQTHSEPVLNERKEMILRHLERETIFLGQKEAVKRFRKHLLWYTKGIRGGASFRSRVT 302 Query: 296 VLNNSPDIARAIQAIDIEK 314 +++ + R I+A ++ Sbjct: 303 TISDQNLLLREIEAFFDQE 321 >UniRef50_C4Z9L8 tRNA-dihydrouridine synthase n=26 Tax=Firmicutes RepID=C4Z9L8_EUBR3 Length = 323 Score = 337 bits (865), Expect = 3e-91, Method: Composition-based stats. Identities = 79/302 (26%), Positives = 140/302 (46%), Gaps = 17/302 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 ++L PM GV D R L E L E V L K S Sbjct: 20 LILGPMAGVTDLPFRLLCKEQG-AGLLCMEMVSAKAILYKNKNTE------SLLSIDERE 72 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 V +Q+ G PQ +A+ A + E +D+N GCP + +G G+ L+K+P L Q Sbjct: 73 KPVSLQMFGSDPQIMAQIAKQIEERPFDILDINMGCPVPKIVNNGEGSALMKNPLLAGQI 132 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 +++ +A+ PV+VK+R G+D E+A +++GA+ + VHGRT+EQ Y + Sbjct: 133 IESIVKAI--DKPVTVKIRKGFDDEHVNAVELAHVAEESGASAVAVHGRTREQYYSGK-A 189 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVV---- 237 DW I +++ ++IPVI NG++ + + +GCD MI RGA P + + Sbjct: 190 DWDIIRQVKEAVSIPVIGNGDLLSAEDVIKMQEQTGCDGFMIARGAQGNPWIFSQILHYF 249 Query: 238 --KYNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVR 295 ++ + + EV ++ ++ R+ + + +++ ++ Y ++ L V Sbjct: 250 ETGEHQEKPSFEEVRRMILRHARMMIEFKGEYTGIHEMRKHTAWYTAGYPHSSRLRAAVN 309 Query: 296 VL 297 + Sbjct: 310 TV 311 >UniRef50_C8W3U6 TIM-barrel protein, nifR3 family n=8 Tax=Clostridia RepID=C8W3U6_DESAS Length = 322 Score = 334 bits (857), Expect = 3e-90, Method: Composition-based stats. Identities = 82/316 (25%), Positives = 146/316 (46%), Gaps = 17/316 (5%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 RV+ APM G+ D R L E L TE + L + T Sbjct: 12 RVISAPMAGITDRAYRILAKEAG-CGLVCTEMISDQALLYGNPKTN------ILLDCTGE 64 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + +Q+ G P+++A A+ G+ +D+N GCP+ + +G GA L++ PEL + Sbjct: 65 TPPISMQIFGSSPEYMARAASITEARGASIIDINMGCPTPKIVKNGEGAALMRKPELAQK 124 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSG-EKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 + ++V +PV+VK+R GWD E+A ++AGA + VHGRT+ Q Y + Sbjct: 125 IISDVVQSV--RVPVTVKIRKGWDESFPNAVEMALLAEEAGAKAVTVHGRTRSQFYSGK- 181 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSR----- 235 DW I +++ + IPVI NG+I + + A + + +GCDAVMIGR +L P + Sbjct: 182 ADWDIIKSVKKAVTIPVIGNGDIREPRDAVRMLMHTGCDAVMIGRASLGNPWIFSSTVHF 241 Query: 236 -VVKYNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHV 294 N P + +++ ++ L + + +++ ++ + EA + + + Sbjct: 242 LDCGENLPAPSPRQRLSVALRHLELLIELKGEYIAIREMRKHAAWYTRGLREANRIREKI 301 Query: 295 RVLNNSPDIARAIQAI 310 + +I + Sbjct: 302 NRAVSLSEIRELLNYF 317 >UniRef50_A9KHE5 TIM-barrel protein, nifR3 family n=2 Tax=Clostridiales RepID=A9KHE5_CLOPH Length = 324 Score = 334 bits (856), Expect = 4e-90, Method: Composition-based stats. Identities = 86/316 (27%), Positives = 147/316 (46%), Gaps = 17/316 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 ++L PM GV D R L E DL TE V K + + Sbjct: 14 LVLGPMAGVTDLPFRLLCKEQG-ADLIYTEMVSAKGIYYNNKNTEVLLEVEEKE------ 66 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 V +QL G+ P ++E A R +D+N GCP V +G G+ L+ PE I + Sbjct: 67 RPVALQLFGEDPYIMSEMAKRIEHRNFDFLDINMGCPVPKVVNNGEGSALMLKPERIGEI 126 Query: 123 AKAMREAVPAHLPVSVKVRLGWD-SGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 A+ +A+ PV+VK+R G+ E+A ++Q+G + VHGRT+EQ Y E Sbjct: 127 VSAISKAIKK--PVTVKIRKGFTKDNINAVEVAKVIEQSGGAAIAVHGRTREQYYSGE-A 183 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN- 240 DW I +++ ++IPVI NG++ + ++ M+ +GCDAVMI RG P K+ Sbjct: 184 DWDIIKAVKEAVSIPVIGNGDVQTPEDVKRMMSYTGCDAVMIARGVRGNPWFFSQAKHYL 243 Query: 241 -----EPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVR 295 + PEV+ ++ ++ RL + + +++ +++ Y ++ +L V Sbjct: 244 NTGEILAKPSVPEVIEMILRHGRLAIEVKGEFTAMHEMRKHVAWYTMGYPKSAKLRNQVN 303 Query: 296 VLNNSPDIARAIQAID 311 + D+ ++ + Sbjct: 304 EIETYEDLIVLMKKYE 319 >UniRef50_B9MMW4 TIM-barrel protein, nifR3 family n=3 Tax=Clostridia RepID=B9MMW4_ANATD Length = 328 Score = 333 bits (855), Expect = 5e-90, Method: Composition-based stats. Identities = 85/318 (26%), Positives = 157/318 (49%), Gaps = 20/318 (6%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 ++ LAPM G D + R L + D+ +TE + +L S + Sbjct: 7 KIFLAPMAGFTDKVFRRLCSRFG-ADVTVTEMISSKALVLGSAKTKD------LISFSEE 59 Query: 62 GTLVRVQLLGQFPQWLAENAARAV-ELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 + VQ+ G P+ +A++ E +D+N GCP + SG G L+K+P L Sbjct: 60 EKIRGVQIFGNDPEVMAQSVKILQDEFEYHFIDINMGCPVPKLVRSGEGCALMKNPSLAA 119 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDS-GEKKFEIADAVQQAGATELVVHGRTKEQGYRAE 179 + + + + + PVSVK+R G+D E A +Q++GA+ + VHGRT+ Q Y + Sbjct: 120 KIVEEVAKV--SRKPVSVKIRKGFDDENINAPEFAYILQESGASFVTVHGRTRAQLYSGK 177 Query: 180 HIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY 239 DW+ I ++++L IPVIANG+I D++SA++ ++ D++MIGR AL P + +K Sbjct: 178 -ADWEIIRKVKEKLKIPVIANGDIVDFESAKKAYEVTRADSIMIGRAALGNPWVFLQIKE 236 Query: 240 NEPRM-------PWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQ 292 + P ++ ++ +T+L + V ++ LS+ K + A ++ Sbjct: 237 GFEKGYVETKVLPHMKIRVAIEFFTQLCSE-KGDKMAVLEARKHLSFFVKGIENAAKIRD 295 Query: 293 HVRVLNNSPDIARAIQAI 310 + +NN+ ++ ++ + Sbjct: 296 KINRINNATELLEFLKEL 313 >UniRef50_D1BLD4 TIM-barrel protein, nifR3 family n=12 Tax=cellular organisms RepID=D1BLD4_VEIPT Length = 328 Score = 332 bits (853), Expect = 8e-90, Method: Composition-based stats. Identities = 91/312 (29%), Positives = 140/312 (44%), Gaps = 17/312 (5%) Query: 4 LLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGT 63 +LAPM GV D R L E + L TE V + + H Sbjct: 18 ILAPMAGVSDIAYRLLAKE-HGAALVCTEMVSAMGIKYKNERTHE------LLRIEDVER 70 Query: 64 LVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGA 123 V +Q+ G P+ +A A G+ VD+N GCP K V SG G+ L+K+P+L + Sbjct: 71 PVSMQIFGSNPEAIALGAKVVANAGADIVDINMGCPVKKVVTSGDGSALMKNPDLAAR-- 128 Query: 124 KAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRAEHID 182 A +PV+VK+R+GWDS + A ++ G + VHGRTKEQ Y H D Sbjct: 129 VAEAAVEAVDVPVTVKMRIGWDSDSINVVDFAKRIESTGVAAIAVHGRTKEQMYSG-HAD 187 Query: 183 WQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN-- 240 W I +++ +++PV+ NG+I + + A+Q + +GCDAVM+GRGA P + + + Sbjct: 188 WSYIKAVKEAVSVPVLGNGDIVEPEDAKQMLDETGCDAVMVGRGAQGNPWIFGRIHHYLA 247 Query: 241 ----EPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRV 296 P E + +L K+ L Q V I+ + K E+ V Sbjct: 248 TGEVLPGPTDIERLDMLLKHFDLLCQYKGEGMAVKEIRTHAGWYMKGLPESAYWRNRVNT 307 Query: 297 LNNSPDIARAIQ 308 + ++ Sbjct: 308 IQTVTSFHNELE 319 >UniRef50_C0GJW0 TIM-barrel protein, nifR3 family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GJW0_9FIRM Length = 319 Score = 331 bits (849), Expect = 2e-89, Method: Composition-based stats. Identities = 96/316 (30%), Positives = 150/316 (47%), Gaps = 17/316 (5%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 +V+LAP+ GV DS R L E+ L TE + + + L+ A T Sbjct: 11 KVILAPLAGVTDSSFRILAREMG-CALVFTEMISAKGAVCAPEQT------LKIARFTAQ 63 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + +QL G P+ A +D+N GCP K V G G G L++DP+ Y Sbjct: 64 ERPIGIQLFGSDPEIFARATELCNGQAPDLLDINMGCPVKKVAGKGEGCALMRDPDKAYA 123 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 KA+ +A A +PV+VK+R GWD E E+A AVQ+AGA + VHGRT+ QGY Sbjct: 124 ITKAVCDA--ATMPVTVKMRKGWDDSEVNAVEVALAVQEAGAAAVTVHGRTRAQGYSGR- 180 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSR----- 235 DW I +++ L +PV+ NG+IW+ Q AQ+ + +GCDAVM+ RG L L R Sbjct: 181 ADWSVIARVKEALRVPVVGNGDIWEPQDAQRMLQQTGCDAVMLARGVLGNLWLIRRTVHY 240 Query: 236 -VVKYNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHV 294 P E V L ++ ++ V +++ +++ K A ++ + Sbjct: 241 LETGELLPEPEMAERVRLACRHLKMVVDEKGEYMGVREMRKHMAWYLKGMRGAAQVRNEI 300 Query: 295 RVLNNSPDIARAIQAI 310 ++ ++ + Sbjct: 301 MRAKTKEEMTAILENL 316 >UniRef50_Q3A324 Dihydrouridine synthase n=10 Tax=Desulfuromonadales RepID=Q3A324_PELCD Length = 342 Score = 329 bits (845), Expect = 6e-89, Method: Composition-based stats. Identities = 90/315 (28%), Positives = 148/315 (46%), Gaps = 17/315 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 +LLAPM G+ D R L+ L TE + +L + TPS Sbjct: 31 ILLAPMAGITDLACRLLMRPYG-IGLAFTEMISANGLVLGGDATRD------LLASTPSD 83 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 + +QL G+ P++L++ + G +DLN GCP K V SG G+ L++ P + Q Sbjct: 84 RPLGIQLFGENPKYLSQACKQVESHG-DLIDLNIGCPVKKVVRSGAGSALMQTPARVAQI 142 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 AMR A HLP++VK+R GWD+ EIA +Q G + +H RT+ QG+ Sbjct: 143 IAAMRRA--THLPLTVKIRAGWDASHINFLEIAHIAEQEGVDAITLHPRTRSQGFSG-SA 199 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVV---- 237 +W I ++++R IPVI +G+I++ Q AQ+ + +GCDAVMIGRG P L+R + Sbjct: 200 NWDLIAELKRRSTIPVIGSGDIFEAQYAQRMLQQTGCDAVMIGRGCYGNPWLARDILAMR 259 Query: 238 -KYNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRV 296 + E + ++ L + + V +++ L + K A + + Sbjct: 260 QGQTPAPVTPEERCDVALRHMELFLRFNDERKAVFDLRKHLCWYAKGLPGAAQFRSSINR 319 Query: 297 LNNSPDIARAIQAID 311 + ++ + Sbjct: 320 AMSIEEMRTLVMHFF 334 >UniRef50_Q9CJW1 tRNA-dihydrouridine synthase C n=7 Tax=Gammaproteobacteria RepID=DUSC_PASMU Length = 312 Score = 329 bits (845), Expect = 7e-89, Method: Composition-based stats. Identities = 210/308 (68%), Positives = 246/308 (79%) Query: 1 MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTP 60 MRV+LAPM+GVLD VR+LLT+VN YDLC++EFVRVVDQLLP KVF+R+CPEL T Sbjct: 1 MRVILAPMQGVLDPFVRQLLTQVNQYDLCVSEFVRVVDQLLPTKVFYRLCPELYQQGLTA 60 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 SGT VRVQLLGQ PQWLAENA RA+ELGS G+DLNCGCPSKTVNGS GGA+LLK PELIY Sbjct: 61 SGTPVRVQLLGQHPQWLAENAQRAIELGSHGIDLNCGCPSKTVNGSNGGASLLKQPELIY 120 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 KA+R AVP LPVSVKVRLGWD+ E+ FEIADAVQQ GATE+ +HGRTK GYRA+ Sbjct: 121 HATKALRAAVPKALPVSVKVRLGWDNSEQAFEIADAVQQGGATEITIHGRTKMDGYRADR 180 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 I+W I D+RQRL+IPVIANGEIWDWQS Q C+A +GC +MIGRGALNIPNLS+VVK+N Sbjct: 181 INWAKINDVRQRLSIPVIANGEIWDWQSGQACLAETGCQDLMIGRGALNIPNLSQVVKFN 240 Query: 241 EPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNNS 300 + +MPW EV+ LL +Y E Q DTG YHVARIKQWL YL+K Y +A LFQ ++ ++ Sbjct: 241 QAKMPWAEVLILLHQYAHTENQFDTGFYHVARIKQWLGYLKKAYPQADALFQLIKTCHDG 300 Query: 301 PDIARAIQ 308 + I Sbjct: 301 QALRMKID 308 >UniRef50_B0VH62 Dihydrouridine synthase family protein n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VH62_9BACT Length = 321 Score = 329 bits (844), Expect = 8e-89, Method: Composition-based stats. Identities = 77/311 (24%), Positives = 130/311 (41%), Gaps = 14/311 (4%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 + LAP+ G DS R++ ++ +E V LQ S Sbjct: 11 LFLAPLAGYSDSAFRQICKNWG-AEVLYSEMVSADGLTRNSAKT------LQYVQFDESE 63 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 +Q+ G P +A + L +D+N GCP K V G G+ L++ P L + Sbjct: 64 HPFGIQIFGSNPLIMARAVEVLLPLKPDFMDINMGCPVKKVIRKGAGSALMQTPSLAGKI 123 Query: 123 AKAMREAVPAHLPVSVKVRLGWD-SGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 K ++ A+ +P+SVK R GW+ + + +Q+ GA L +H RT Q + Sbjct: 124 VKEVKNALLGRIPLSVKFRSGWNFQNQNYLQFGLMLQECGADFLCLHPRTSSQMFSGTS- 182 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK--- 238 +W+ I ++Q + IPV+ NG+I + AQ+ + + CD +MIGRGAL P L + Sbjct: 183 NWEQIKILKQNVQIPVVGNGDIKTPEDAQRMITETNCDGIMIGRGALGKPWLFAQSRQLI 242 Query: 239 --YNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRV 296 + E+V + + + V ++ L + K EL + Sbjct: 243 STGTYNPVIQKEIVKTIFAHLDKALLYKSEDVVVREMRAHLCFYTKGILGGAELRNQINH 302 Query: 297 LNNSPDIARAI 307 N ++ I Sbjct: 303 TENISELKAII 313 >UniRef50_A9NE09 tRNA-dihydrouridine synthase n=2 Tax=Mollicutes RepID=A9NE09_ACHLI Length = 336 Score = 328 bits (841), Expect = 2e-88, Method: Composition-based stats. Identities = 88/322 (27%), Positives = 146/322 (45%), Gaps = 18/322 (5%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 +++LAPM GV + R + ++ + E V LQ T Sbjct: 13 KLILAPMAGVSNHPFRLMARQLG-AGVVFAEMVSDKAIFFQNPKT------LQMLYMTVE 65 Query: 62 GTLVRVQLLGQFPQWLAENAARA-VELGSWGVDLNCGCPSKTV-NGSGGGATLLKDPELI 119 Q+ G + + E A +D+N GCP V G+ GA+L+KDP+ I Sbjct: 66 EKPAAQQIFGSDLETMVEAAMFIDKNSNCDFIDINMGCPVPKVAIGAQAGASLMKDPQKI 125 Query: 120 YQGAKAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRA 178 Y KA++E V PV+VK+R GWDS E+A +++AGA+ + VH RT+ QGY Sbjct: 126 YDIVKAIKEKVSK--PVTVKIRSGWDSESVNAVEVAKMIEKAGASLITVHARTRAQGYSG 183 Query: 179 EHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK 238 E D I +++ ++IPVI NG I D +SA+ + +GCDAVMIGR +L P + R + Sbjct: 184 EP-DLDVIKAVKEAVSIPVIGNGNIVDGKSAKHMLEYTGCDAVMIGRASLGNPWIFREIN 242 Query: 239 -----YNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQH 293 P + EV L+ ++ + ++ + K +A+++ Sbjct: 243 AYLNGEETPVRTYEEVKTLMIRHFDDLAKLKGEHTACLEMRSHGPWYLKGLPKASQVRAK 302 Query: 294 VRVLNNSPDIARAIQAIDIEKL 315 + N + ++ + + Sbjct: 303 LARTTNRAEYMENLEMYFDDVM 324 >UniRef50_Q87N01 tRNA-dihydrouridine synthase C n=54 Tax=Gammaproteobacteria RepID=DUSC_VIBPA Length = 322 Score = 326 bits (836), Expect = 7e-88, Method: Composition-based stats. Identities = 180/315 (57%), Positives = 233/315 (73%), Gaps = 1/315 (0%) Query: 1 MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTP 60 MRV+L PMEGVLD L+R++LTE+NDYDLC+TEFVRV+DQ+LP VFHR+CPEL S+T Sbjct: 1 MRVVLGPMEGVLDHLMRQILTEINDYDLCVTEFVRVIDQVLPDHVFHRLCPELMQGSQTT 60 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 SG V VQLLGQ P W+AENA RA ELG+ G+DLN GCP+K VN S GGA LL+ PELI+ Sbjct: 61 SGVPVHVQLLGQEPHWMAENAIRAAELGARGIDLNFGCPAKMVNKSKGGAALLQHPELIH 120 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 KA R+AVPA++PVS K+RLGW++ E FEI DA+Q AGA EL VH RTK+ GY+A Sbjct: 121 SVVKACRDAVPANIPVSAKIRLGWENPEDCFEIVDAIQSAGANELTVHARTKQGGYKASE 180 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 I W+ I IR+R +IP+IANGEIW+++ Q+C+ +G D++M+ RGA NIPNL +VK+N Sbjct: 181 IKWEYINKIRERFSIPLIANGEIWNFEDGQRCIETTGVDSLMVCRGAFNIPNLGNMVKHN 240 Query: 241 EPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNNS 300 M W +VV LL Y++ E +GD GLY+ R+KQW +YLR+ Y EA ELF+ +R N + Sbjct: 241 HTPMVWSDVVDLLIYYSKFEMKGDKGLYYPNRVKQWFAYLRQSYPEANELFREIRTFNKA 300 Query: 301 PDIARAIQAIDIEKL 315 I IQ ++L Sbjct: 301 APIVEHIQRY-RDEL 314 >UniRef50_Q9KT00 tRNA-dihydrouridine synthase C n=75 Tax=Gammaproteobacteria RepID=DUSC_VIBCH Length = 323 Score = 323 bits (829), Expect = 4e-87, Method: Composition-based stats. Identities = 182/315 (57%), Positives = 228/315 (72%), Gaps = 1/315 (0%) Query: 1 MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTP 60 MRV+L PMEGVLD L+R++LT++NDYD C+TEFVRVV+ LLP VF+R+CPELQ S+TP Sbjct: 1 MRVILGPMEGVLDHLMRDMLTQINDYDFCVTEFVRVVNLLLPDHVFYRLCPELQQGSKTP 60 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 SG V+VQLLGQ P W+AENA RA ELG++G+DLN GCP+K VN S GGA LL+ PELIY Sbjct: 61 SGVPVKVQLLGQDPHWMAENAIRAAELGAYGIDLNFGCPAKMVNQSKGGAALLQHPELIY 120 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 Q KA R+AVPAH+PVS K+RLGW+ E FEI DAV QA A EL VH RTK GY+A Sbjct: 121 QVVKACRDAVPAHIPVSAKIRLGWEDPEDCFEIVDAVAQAKADELTVHARTKAGGYKASE 180 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 I W I IRQ+ +IP+IANGE+W++ Q C+ +G D++M+ RGALN+PNL VVK+N Sbjct: 181 IKWHYIDQIRQKCSIPLIANGEVWNYADGQACIQTTGVDSLMVCRGALNVPNLGNVVKHN 240 Query: 241 EPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNNS 300 MPW EVV LL +YT+ E +GD G Y+ RIKQW +YLR Y +A ELF +R L Sbjct: 241 HAAMPWHEVVDLLLRYTQFEVRGDKGKYYPNRIKQWFAYLRHAYPQANELFGELRTLTQV 300 Query: 301 PDIARAIQAIDIEKL 315 I + ++L Sbjct: 301 EPIVDQLHRY-RDQL 314 >UniRef50_B0S217 Nitrogen regulation protein n=3 Tax=Clostridiales Family XI. Incertae Sedis RepID=B0S217_FINM2 Length = 305 Score = 322 bits (826), Expect = 9e-87, Method: Composition-based stats. Identities = 73/313 (23%), Positives = 134/313 (42%), Gaps = 16/313 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 + LAP+ GV D R L E+ LC TE + K + P Sbjct: 7 LFLAPLAGVTDIPFRILCGELG-AGLCFTEMISAKGLYYDDKKTKK------LLDTDPRE 59 Query: 63 TLVRVQLLGQFPQWLAENAARAVELG-SWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 VQ+ G P+ +A E +D+N GCP+ + +G G+ L+ D L Sbjct: 60 KSTSVQIFGHEPEIIAYATRFLTENYNFKSIDINMGCPAPKIFKNGDGSALMGDLNLAED 119 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 +A + LPVSVK RLG D ++A ++ + +H RT++ Y E Sbjct: 120 VIRACKNN--TDLPVSVKFRLGIDENSMNYMQLAQICERLKVDYITLHARTRKMFYSGE- 176 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 DW I + + ++IPV NG+ + + ++ M S CD V++ RGA+ P + Sbjct: 177 ADWLHIKRVVENVDIPVFGNGDCFTKEDIRKNMEYSNCDGVLLARGAMQNPFIFSD---- 232 Query: 241 EPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNNS 300 + EV+ ++K+ +L+ + + +++ + + K + + ++ + L + Sbjct: 233 DENKSKEEVIDTIKKHMQLKLEFYEERRAILEMRKHIQWYLKGFRNSNKVKNKINQLTDL 292 Query: 301 PDIARAIQAIDIE 313 +I + + E Sbjct: 293 DEIYKILDEFKNE 305 >UniRef50_C1FNC8 Dihydrouridine synthase n=35 Tax=cellular organisms RepID=C1FNC8_CLOBJ Length = 323 Score = 322 bits (826), Expect = 1e-86, Method: Composition-based stats. Identities = 77/312 (24%), Positives = 137/312 (43%), Gaps = 17/312 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 V LAPM G D RE+ E+ L TE V +C + Sbjct: 12 VFLAPMAGFTDIAFREICKELG-CGLVYTEMVSAKALYYESNNTKELCV------ISNKE 64 Query: 63 TLVRVQLLGQFPQWLAENAARAVELG-SWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 V +QL G P+ +A +D+N GCP+ + +G G+ L+KDP+L + Sbjct: 65 KPVALQLFGHEPEIMANAVEFFNNNDDVCILDVNMGCPAPKIVKNGDGSALMKDPKLASE 124 Query: 122 GAKAMREAVPAHLPVSVKVRLGWD-SGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 KAM++ P++VK R G+D + E A ++Q+G + +HGRT+EQ Y + Sbjct: 125 IIKAMKKVAKK--PITVKFRKGFDKNNINAVEFAKIMEQSGVDAITIHGRTREQMYEGK- 181 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 DW I ++ ++IPVI NG+++ + A + + + CD +MIGRGA P + + + Sbjct: 182 ADWAIISKVKNSVSIPVIGNGDVFSSEDALEMINKTDCDGIMIGRGAQGNPWIFKQINEK 241 Query: 241 EPR-----MPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVR 295 E + + + + + V +++ ++ K T++ V Sbjct: 242 IKGEHVYYPTPQERIDICINHYKKSLEYFEEHKAVREMRKHVAVYVKGLKNCTDIKDKVN 301 Query: 296 VLNNSPDIARAI 307 + + + + Sbjct: 302 MEKDPDKVLEEL 313 >UniRef50_Q55724 Probable tRNA-dihydrouridine synthase 1 n=34 Tax=Cyanobacteria RepID=DUS1_SYNY3 Length = 355 Score = 321 bits (824), Expect = 2e-86, Method: Composition-based stats. Identities = 99/322 (30%), Positives = 157/322 (48%), Gaps = 19/322 (5%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 RVL +P+ GV D + R L+ + TE V + R P++ P Sbjct: 43 RVLQSPLSGVTDLVFRRLVRRYAPQAMLYTEMVSATEIHH-----LRTLPQVMEID--PR 95 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + +QL P ++AE A +AV G+ VD+N GCP + GGG++LL+ P + Sbjct: 96 ENPISIQLFDCRPDFMAEAAQKAVAQGAQSVDINMGCPVNKITKKGGGSSLLRQPAVAEA 155 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 K + AV +PV+VK RLGWD GE E A +Q AGA L +HGRT+ QGY Sbjct: 156 IVKTVVAAV--DVPVTVKTRLGWDDGEINIVEFAQRLQDAGAQMLTLHGRTRAQGYNGR- 212 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY- 239 WQ I ++Q L IPVIANG+I+ ++A C+ +G D VM RG+L P L +++ Sbjct: 213 ARWQWIAKVKQALTIPVIANGDIFSVEAAIACLEETGADGVMCSRGSLGYPFLVGEIEHF 272 Query: 240 -----NEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHV 294 E + Q++ ++ + + + ++ L++ K++ A L + + Sbjct: 273 FKTGEKRKAPTVAEKLTCAQEHLQMLWEYKGQR-GLFQARKHLAWYCKDFPGAAALREQL 331 Query: 295 RVLNNSPDIARAIQ-AIDIEKL 315 +N+ + + AI KL Sbjct: 332 FQINSVQEGKDLLDQAISTAKL 353 >UniRef50_Q1ZGI3 NifR3/Smm1 family protein n=1 Tax=Psychromonas sp. CNPT3 RepID=Q1ZGI3_9GAMM Length = 313 Score = 321 bits (823), Expect = 2e-86, Method: Composition-based stats. Identities = 147/308 (47%), Positives = 207/308 (67%), Gaps = 1/308 (0%) Query: 1 MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTP 60 M++ LAPMEGV+D +R LLT + DLC+TEF+RV+ LP KV+ R+ PEL N S+TP Sbjct: 1 MKITLAPMEGVMDHHMRALLTSLGGIDLCVTEFIRVISLTLPAKVYRRVSPELFNQSKTP 60 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 SGT VR+QLLGQ PQ LA NA +A+ +GS G+DLN GCP+K VN S GGA LLK PE +Y Sbjct: 61 SGTPVRIQLLGQDPQCLANNARKALLVGSDGIDLNFGCPAKAVNKSKGGAILLKSPETLY 120 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 + K +R ++ +SVK+RLG+ E A A+ +AGA EL VH RTKE+GY A Sbjct: 121 KIVKEVRASMHTCETLSVKIRLGYADKSLAIENAQAICEAGANELAVHARTKEEGY-APP 179 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 W I IR+ ++IPV ANG+I+ + A++C ISGC ++MIGRGAL PNL++V+K Sbjct: 180 AHWHWIAKIRESIDIPVTANGDIFSAEDAKRCHEISGCHSLMIGRGALATPNLAQVIKGI 239 Query: 241 EPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNNS 300 E WP+++ L+ +Y ++ GD Y +RIKQWL+++R + +A Q VR + ++ Sbjct: 240 EEPYSWPQILTLMSQYLIVQTHGDKEKYLPSRIKQWLTFMRLQQPQALIFLQAVRKIKST 299 Query: 301 PDIARAIQ 308 ++ AI+ Sbjct: 300 QEMIHAIE 307 >UniRef50_P37567 Probable tRNA-dihydrouridine synthase 1 n=19 Tax=Bacilli RepID=DUS1_BACSU Length = 333 Score = 320 bits (821), Expect = 4e-86, Method: Composition-based stats. Identities = 81/320 (25%), Positives = 136/320 (42%), Gaps = 18/320 (5%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 RV+LAPM GV +S R + E L E V L + Sbjct: 12 RVVLAPMAGVCNSAFRLTVKEFG-AGLVCAEMVSDKAILYNNART------MGMLYIDER 64 Query: 62 GTLVRVQLLGQFPQWLAENAARA-VELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 + +Q+ G + L E A + +D+N GCP + GA L DP+ IY Sbjct: 65 EKPLSLQIFGGKKETLVEAAKFVDQNTTADIIDINMGCPVPKITKCDAGAKWLLDPDKIY 124 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEK-KFEIADAVQQAGATELVVHGRTKEQGYRAE 179 + A+ +AV + PV+VK+R+GWD + A AV++AG + +HGRT+ Q Y Sbjct: 125 EMVSAVVDAV--NKPVTVKMRMGWDEDHIFAVKNAQAVERAGGKAVALHGRTRVQMYEGT 182 Query: 180 HIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNL------ 233 +W I +++Q ++IPVI NG++ Q A++ + +G D VMIGR AL P + Sbjct: 183 -ANWDIIKEVKQSVSIPVIGNGDVKTPQDAKRMLDETGVDGVMIGRAALGNPWMIYRTVQ 241 Query: 234 SRVVKYNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQH 293 + E +A+ + + V +++ ++ K + Sbjct: 242 YLETGKLKEEPQVREKMAVCKLHLDRLIDLKGENVAVREMRKHAAWYLKGVKGNANVRNE 301 Query: 294 VRVLNNSPDIARAIQAIDIE 313 + + + + A +E Sbjct: 302 INHCETREEFVQLLDAFTVE 321 >UniRef50_B0TBQ2 Dihydrouridine synthase tim-barrel nifr3 family protein n=3 Tax=Clostridiales RepID=B0TBQ2_HELMI Length = 331 Score = 318 bits (816), Expect = 1e-85, Method: Composition-based stats. Identities = 88/314 (28%), Positives = 141/314 (44%), Gaps = 17/314 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 V+ APM GV D R +L E + L TE + + ++ T Sbjct: 20 VVAAPMAGVTDKPFRTVLKE-HRCPLVYTEMISDKALTYANRNT------MEILDITGEA 72 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 + VQ+ G P +AE A G+ +D+N GCP+ + +G GA LLK P+L Sbjct: 73 RPIAVQIFGSEPAVMAEAARIVEAAGASIIDINMGCPAPKIVRNGEGACLLKTPDLAVDI 132 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGEK-KFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 A+A+ AV +PV+VK+R+GW SG E+A ++ G L VHGRT+E Y + Sbjct: 133 AEAVVRAV--QVPVTVKMRIGWSSGRIVAPELAPRLEAVGVQALTVHGRTREMFYSGQ-A 189 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNE 241 DW I + ++++IPVI NG++W+ A + + +GC AVMIGRG + P + + + Sbjct: 190 DWSVIAETVRQVSIPVIGNGDVWEPDDALRMLVETGCAAVMIGRGCMGNPWIFSRLVHWA 249 Query: 242 PRM------PWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVR 295 E + + V ++ LS+ K A+ L + Sbjct: 250 ETGEMPPPPSPEERINQALLHLEHIVALKGEERGVREMRGHLSWYLKGIRGASRLRAEIN 309 Query: 296 VLNNSPDIARAIQA 309 + + R + Sbjct: 310 QAPDRESVVRLLTE 323 >UniRef50_C7PIH0 TIM-barrel protein, nifR3 family n=7 Tax=Bacteroidetes RepID=C7PIH0_CHIPD Length = 354 Score = 318 bits (815), Expect = 2e-85, Method: Composition-based stats. Identities = 87/317 (27%), Positives = 136/317 (42%), Gaps = 19/317 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 +LLAPME V D R + E DL TEF+ + R Sbjct: 14 LLLAPMEDVSDPPFRAVCKEKG-ADLMYTEFISSEGLIRDAIKSRRKLDIFDY------E 66 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 V +Q+ G + +A A +D+N GCP K V G G+ +LKD + + Sbjct: 67 RPVGIQIFGGDEEPMAMAAQIVEATNPDLLDINYGCPVKKVVCKGAGSGILKDIPKMVKL 126 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSG-EKKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 A+ +A LPV+VK RLGWD + E+A+ +Q G L +HGRT+ Q Y+ H Sbjct: 127 TAAVVKA--TKLPVTVKTRLGWDDDTKNIEEVAERLQDVGIQALTIHGRTRTQMYKG-HA 183 Query: 182 DWQAIGDIRQRL--NIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY 239 DW IG ++ +IP+ NG+I + A G D VMIGR A+ P + +K+ Sbjct: 184 DWTLIGKVKNNPRIHIPIFGNGDICTPEQAIAAREKYGVDGVMIGRAAIGYPWIFNEIKH 243 Query: 240 ------NEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQH 293 + P E V + +K+ + Q + + +++ + K E Q Sbjct: 244 FMQTGEHLPPPSVLERVEVCKKHLQHSVQWKGDVVGILEMRRHYTNYLKGLPHIKEFRQQ 303 Query: 294 VRVLNNSPDIARAIQAI 310 + + + + AI Sbjct: 304 LVTCSTLAAVEDVLDAI 320 >UniRef50_B7GFK6 tRNA-dihydrouridine synthase n=211 Tax=Bacteria RepID=B7GFK6_ANOFW Length = 351 Score = 318 bits (815), Expect = 2e-85, Method: Composition-based stats. Identities = 83/324 (25%), Positives = 138/324 (42%), Gaps = 22/324 (6%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 V+LAPM GV +S R + E L E V L + Sbjct: 31 VVLAPMAGVCNSAFRLTVKEFG-AGLVCAEMVSDKAILFNNPKT------MGMLYIDERE 83 Query: 63 TLVRVQLLGQFPQWLAENAARAVEL-GSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + +Q+ G + L + A + + +D+N GCP + GA L DP IY Sbjct: 84 KPLSLQIFGGEKETLVQAAKYVDQHTNADIIDINMGCPVPKITKCDAGAKWLLDPNKIYD 143 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEK-KFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 A+ +AV PV+VK+R+GWD E A AV++AG + VHGRT+ Q Y + Sbjct: 144 MVAAVVDAVEK--PVTVKMRIGWDENHIYAVENAQAVERAGGQAVAVHGRTRVQMYEGK- 200 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPN-LSRVVKY 239 DW I +++ + IPVI NG++ Q A++ + +G D VMIGR AL P + R V+Y Sbjct: 201 ADWNVIKQVKEAVRIPVIGNGDVQTPQDAKRMLEQTGVDGVMIGRAALGNPWMIYRTVRY 260 Query: 240 NE-----PRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHV 294 E P E + + + V +++ ++ K ++ + Sbjct: 261 LETGELIPEPSVREKIEVCILHLDRLIALKNEYIAVKEMRKHAAWYLKGIRGNAKVRNAI 320 Query: 295 RVLNNSPD----IARAIQAIDIEK 314 + + ++ ++ ++ Sbjct: 321 NECQTRDELVTLLMSFVEEVEAKE 344 >UniRef50_B0SC53 tRNA-dihydrouridine synthase n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SC53_LEPBA Length = 316 Score = 317 bits (814), Expect = 3e-85, Method: Composition-based stats. Identities = 143/305 (46%), Positives = 200/305 (65%), Gaps = 2/305 (0%) Query: 1 MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTP 60 MR++LAPMEG+LD +RE+LT++ YD C++EF+RV D LLP F R PEL+N+SRT Sbjct: 1 MRIILAPMEGLLDFRLREILTQIGGYDECVSEFIRVNDTLLPPHRFFRTAPELKNSSRTK 60 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 S T V++Q+LG P +A+NA LG++G+D+N GCP+ TVN + GGA LLK+P L+Y Sbjct: 61 SDTPVKIQILGSDPNRMADNAHLVASLGAYGIDINFGCPAPTVNRNRGGAALLKEPNLMY 120 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 KA+R VP ++PV+ K+RLG++S E + A A+++ GA E+VVH RTK GY+ Sbjct: 121 SIVKAVRNVVPENIPVTAKMRLGYESTELALDCAKALEEGGAKEIVVHARTKTDGYK-PP 179 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 W+ I I+ L I VIANGEIW Q A QC ISGCD +MIGRGA+ P+++ ++K Sbjct: 180 AYWEWIAKIKSILKINVIANGEIWTVQDAIQCQKISGCDDIMIGRGAVTNPSIALLIKKK 239 Query: 241 -EPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNN 299 E RM W + +L Y + + V RIKQWL YL +EY+EA FQ ++ ++N Sbjct: 240 LEERMSWQKTKEVLSSYWLSMEPDVEAVSRVGRIKQWLHYLSREYEEAQIDFQKIKRISN 299 Query: 300 SPDIA 304 D Sbjct: 300 PKDFE 304 >UniRef50_Q1IVR5 Dihydrouridine synthase TIM-barrel protein nifR3 n=2 Tax=Acidobacteria RepID=Q1IVR5_ACIBL Length = 370 Score = 316 bits (811), Expect = 5e-85, Method: Composition-based stats. Identities = 93/314 (29%), Positives = 146/314 (46%), Gaps = 15/314 (4%) Query: 4 LLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGT 63 +LAPM GV D++ R + + L +TEF + R + + + Sbjct: 35 VLAPMAGVTDTVFRRFIRNLGGCGLMMTEFTSADGLARMREAKAR-----RYLTFYGNER 89 Query: 64 LVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGA 123 + QL G + LA+ A +LG VDLN GCPSK V GG+ LL+D I Sbjct: 90 PISAQLFGSDAETLADAAKVVQDLGFDLVDLNLGCPSKRVVKCNGGSGLLRDLPQIKVIF 149 Query: 124 KAMREAVPAHLPVSVKVRLGWDSGEK-KFEIADAVQQAGATELVVHGRTKEQGYRAEHID 182 +++R+AV +P +VK R GW+ E E+A + G + +H RT+EQGY + + Sbjct: 150 ESVRKAVT--IPFTVKFRAGWNEKELVFLELAKLAENCGLNAVAMHARTREQGYSGQ-AN 206 Query: 183 WQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNEP 242 W I D++Q + IPVI NG+I + A +A +GCDAVMIGR A + P + R ++ Sbjct: 207 WGWIADLKQVVKIPVIGNGDIRTPEDAAAMVAKTGCDAVMIGRSAASNPWIFRQIEQYTA 266 Query: 243 R-----MPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVL 297 + +++ Y R+ + DT ++KQ+ S+ L + V Sbjct: 267 TGRYDLPTNEDRYEMIRMYFRMLIENDTQG-AEGKMKQFASWFTHGVPGGGVLRKAVYEA 325 Query: 298 NNSPDIARAIQAID 311 I A+ Sbjct: 326 KKRETILVAVDQFF 339 >UniRef50_B8GCQ5 TIM-barrel protein, nifR3 family n=6 Tax=Chloroflexi (class) RepID=B8GCQ5_CHLAD Length = 351 Score = 316 bits (810), Expect = 7e-85, Method: Composition-based stats. Identities = 92/319 (28%), Positives = 144/319 (45%), Gaps = 15/319 (4%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 ++LAPM GV DS+ R ++ + L TE HR+ L P Sbjct: 28 IVLAPMAGVTDSIFRRMILRLGGCGLVSTEMTNAASVSPKALRRHRLLDYL------PEE 81 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 + +Q+ G P +A A +LG+ +D+NCGCPS V G G G+ LL+D + + Sbjct: 82 RPLTMQISGNDPDLVANAARVVEQLGADIIDINCGCPSPKVTGGGHGSALLRDLPKMERL 141 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 +A+R AV +PV++K+R GWD E + AG L +H RT+EQGY+ + Sbjct: 142 LRAVRAAV--QIPVTLKLRAGWDEASLNFIEAGQRAEAAGVAALTLHPRTREQGYKGQ-A 198 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK--- 238 DW + +++ ++IPVI +G++ Q A + SG D VMIGRGA+ P + R V Sbjct: 199 DWSRVAALKRAVSIPVIGSGDVVTAQDALIRLRDSGADGVMIGRGAIANPWIFRQVADLR 258 Query: 239 --YNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRV 296 + LL +Y + + + +IKQ + + L V Sbjct: 259 QGRTPFEPTPADKYHLLLEYMAIYAEELPERLALNKIKQLIGQFYIGLPGSNHLRVAVHT 318 Query: 297 LNNSPDIARAIQAIDIEKL 315 + AI+ L Sbjct: 319 STSLAAAQEAIERFFAPYL 337 >UniRef50_B2A3T5 TIM-barrel protein, nifR3 family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A3T5_NATTJ Length = 327 Score = 316 bits (810), Expect = 7e-85, Method: Composition-based stats. Identities = 82/317 (25%), Positives = 143/317 (45%), Gaps = 17/317 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 +++APM GV D R +L + + L E V + K + G Sbjct: 15 IIVAPMAGVTDYPYRRILAKFS-PGLICGEMVSAKGMVYGNKKTEEMVI------HHNQG 67 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 Q+ G P+ +A+ A + LG +D+N GCP+ + +G G+ LLK P L + Sbjct: 68 VHYSQQIFGSDPKVMADAAVKLENLGVDSIDVNMGCPAPKIVKNGEGSALLKKPHLAQEI 127 Query: 123 AKAMREAVPAHLPVSVKVRLGWD-SGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 + + +V +LPV+VK+R G+D E+A +Q+ G L VHGRT EQ Y + Sbjct: 128 VREIVNSV--NLPVTVKIRKGFDRKSSDPLELALRLQEVGIKALAVHGRTCEQQYSGK-A 184 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK--- 238 DW+ + ++ L+IPVI NG+I+ + A + ++ CD +M+GRG + P L K Sbjct: 185 DWEVVAKLKNYLDIPVIGNGDIFSSEDAVSALEMTACDGIMLGRGLMGNPWLIEQTKGML 244 Query: 239 ---YNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVR 295 E+ ++ + + +A +++ +S+ K +T + V Sbjct: 245 IKDEKIESPEIHEIKNEMKSHFENAIKYYGESKGIAEMRKHISWYLKSLPGSTSIKDEVM 304 Query: 296 VLNNSPDIARAIQAIDI 312 L + I ++ Sbjct: 305 RLTDVNQIWFSLNEYFQ 321 >UniRef50_A0Q6L0 TRNA-dihydrouridine synthase n=19 Tax=Francisella RepID=A0Q6L0_FRATN Length = 328 Score = 314 bits (805), Expect = 3e-84, Method: Composition-based stats. Identities = 90/324 (27%), Positives = 148/324 (45%), Gaps = 21/324 (6%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 V+LAPM G DS R + E + L TE V + R ++ S Sbjct: 14 VVLAPMAGFCDSAFRTICKE-HGAGLIYTEMVSNKAVV------ERNWETMEMLYMENSE 66 Query: 63 TLVRVQLLGQFPQWLAENAARAVEL-GSWGVDLNCGCPSKTVNGS-GGGATLLKDPELIY 120 + +Q+ G E +D+N GCP V GA LLKD I+ Sbjct: 67 KPLGIQIFGTDIDSFVGATKYIAENTECDFLDINMGCPMPKVAKKLQAGAALLKDVNRIH 126 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRAE 179 + A+ +AV H PV+VK+R+GWD E+A A + AG + + +HGRT+EQ Y + Sbjct: 127 EILTAVVKAV--HKPVTVKMRIGWDDKNINAIEVAKACEDAGVSAIAIHGRTREQMYTGK 184 Query: 180 HIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY 239 +W I D+R+ ++I VI NG+++ SA+ + +G DAVM+GR + P + R + Sbjct: 185 -ANWDIIRDVRKAVDIVVIGNGDVFCPHSAKAMIEHTGVDAVMVGRASRGNPWIFRQIAK 243 Query: 240 NE------PRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQH 293 P E V +L+++ R + T V I+ S+ ++ + E Sbjct: 244 YLNTGELIPPPTPVERVDVLEEHLRRLIKLKTAKVAVKEIRTHASFYLQDLPNSKEFRMK 303 Query: 294 VRVLNNSPDIARAIQAI--DIEKL 315 + L + +I + ++ ++KL Sbjct: 304 LNQLEHEQEIFKILEEYKSFLKKL 327 >UniRef50_B3PD21 Dihydrouridine synthase family protein n=4 Tax=Proteobacteria RepID=B3PD21_CELJU Length = 321 Score = 314 bits (805), Expect = 3e-84, Method: Composition-based stats. Identities = 144/318 (45%), Positives = 193/318 (60%), Gaps = 7/318 (2%) Query: 1 MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTP 60 MR++LAPMEGV++ VR++LT + D C+TEF+RV DQ LP KVF++ EL+N +TP Sbjct: 1 MRIMLAPMEGVVEHHVRDILTRLGGLDGCVTEFIRVTDQKLPYKVFYKYAQELENHCQTP 60 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 +GT V+VQLLG P+ +A NA V G+ +DLN GCP+KTVN GGA LL+ P+ +Y Sbjct: 61 NGTPVKVQLLGSKPEPMALNAQELVRYGAKAIDLNFGCPAKTVNSHEGGACLLRTPDRVY 120 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 KA+R+AVP +PVS K+RLG++ E A AV+ AGA EL VH R+K GY+ Sbjct: 121 SIIKAVRDAVPRAIPVSAKIRLGFEDRTSYMENAQAVEAAGADELTVHARSKADGYK-PP 179 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK-- 238 W I DI+ L IPVIANGEIW + +C S C VM+GRG L+ P+L+R +K Sbjct: 180 AYWHYIADIKAALKIPVIANGEIWSVEDYLRCREQSQCADVMLGRGLLSCPDLARQIKAY 239 Query: 239 ---YNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVR 295 + W EV +L Y RL R+KQWL YL ++Y EA F+ V+ Sbjct: 240 LAGEEYRPLTWGEVCQILFDYYRLTTPLYETRNCGNRVKQWLMYLSRQYPEANVFFEAVK 299 Query: 296 VLNNSPDIAR-AIQAIDI 312 DI IQA+D+ Sbjct: 300 RKTTPADIEACFIQAMDV 317 >UniRef50_Q090Q9 TRNA-dihydrouridine synthase B n=2 Tax=Cystobacterineae RepID=Q090Q9_STIAU Length = 369 Score = 312 bits (800), Expect = 9e-84, Method: Composition-based stats. Identities = 82/313 (26%), Positives = 136/313 (43%), Gaps = 13/313 (4%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS- 61 +LAPM GV + R + + LC TE V + + L+ +P Sbjct: 45 YILAPMAGVSERPFRVIAFKWGAA-LCPTELVSAQGLMRANQRT------LKYLRFSPEV 97 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 +Q+ G P+ +A+ A G+ +D+N GCP K V +G G+ L+ +P + Sbjct: 98 ERPYSLQIFGGEPEAMAQAALVGKAHGAQIIDINMGCPVKKVTKNGAGSALMCEPLRAAR 157 Query: 122 GAKAMREAVPAHLPVSVKVRLGWD-SGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 +A+ EA LPV+ K+R GWD ++A + AG L +H RT++QGY Sbjct: 158 IVQAIAEA--TGLPVTCKIRSGWDAHHRNYLQMAGELFSAGCAALAIHPRTRDQGYSGF- 214 Query: 181 IDWQAIGDIRQRL-NIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY 239 DW I D+++ + +I NG++ A++ +GCD VMIGRGAL P + R + Sbjct: 215 ADWSVIADLKRHFPDRTLIGNGDVKTPADARRMRETTGCDFVMIGRGALGNPWIFRELAG 274 Query: 240 NEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNN 299 P P +L+ + + L V ++ +++ A V L Sbjct: 275 GPPPTPEERCAGVLEHFRAHVEFVGEPLGAVRSFRRHMAWYAHGLHGAAAFRAEVNTLET 334 Query: 300 SPDIARAIQAIDI 312 + A+ Sbjct: 335 PASVEDAVVRFFA 347 >UniRef50_C9KMX2 tRNA-dihydrouridine synthase n=3 Tax=Veillonellaceae RepID=C9KMX2_9FIRM Length = 322 Score = 312 bits (799), Expect = 1e-83, Method: Composition-based stats. Identities = 86/317 (27%), Positives = 142/317 (44%), Gaps = 18/317 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 V LAPM GV D+ R + ++ LC E V + L Sbjct: 12 VFLAPMAGVTDTAYRIIAHDMG-CPLCFAEMVSSQGIHFRNERT------LAMLQSEKEE 64 Query: 63 TLVRVQLLGQFPQWLAENAARAVELG-SWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + +Q+ P+ AE AA LG + +D N GCP+ + +G G+ L++DPE + Sbjct: 65 RPLAMQIFANTPEMAAEAAAFVEALGTADILDFNMGCPAPKIVKNGEGSALMRDPERAFA 124 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 A+R+AV +PV+VK+R GWD+ E+A ++AG + VHGRT+EQ Y Sbjct: 125 ILSAIRKAVK--MPVTVKMRKGWDAASVNVVEMAKLAEEAGVDAIAVHGRTREQFYTGR- 181 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY- 239 DW+ IG++++ + IPVIANG++ + + A++GCD VMIGR A P + R + Sbjct: 182 ADWEIIGEVKRAVKIPVIANGDVRTFDDLDKIRAVTGCDGVMIGRAAQGNPWIFRQFTHY 241 Query: 240 -----NEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHV 294 P E A++ ++ L + +++ ++ + L Sbjct: 242 LETGERLPGPTMKERAAVILRHLDLLLKYKGDYVGPREMRKHATWYTRGIVHGAILRDRF 301 Query: 295 RVLNNSPDIARAIQAID 311 D ++ Sbjct: 302 NKAVTREDFVEILEEYF 318 >UniRef50_Q6F288 TRNA dihydrouridine synthetase n=3 Tax=Mollicutes RepID=Q6F288_MESFL Length = 325 Score = 312 bits (799), Expect = 2e-83, Method: Composition-based stats. Identities = 84/322 (26%), Positives = 142/322 (44%), Gaps = 23/322 (7%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 +++ PM GV + R + E DL E V V K + Sbjct: 11 KLVQGPMAGVSNPPFRLISKEKG-ADLVCAEMVSVEGMTHNNKKT------FSMLAVEKK 63 Query: 62 GTLVRVQLLGQFPQWLAENAARAVEL-GSWGVDLNCGCPSKTV-NGSGGGATLLKDPELI 119 + +Q+ G + E +DLN GCP+ V S G++LLK PELI Sbjct: 64 EHPMSMQIFGNDVESFIVATKWIDENVDCDIIDLNIGCPAPKVAVRSASGSSLLKTPELI 123 Query: 120 YQGAKAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRA 178 Y KA+ E PV+ K+RLGWD E++ +++AGA+ + VHGRT+ + Y Sbjct: 124 YDIVKAVVENTSK--PVTAKIRLGWDKESVNAVEVSKLIEKAGASGITVHGRTRSEFYSG 181 Query: 179 EHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK 238 H DW+ I ++++ +NIPVI NG++ D SA+ + ++GCD VMI RG P + R + Sbjct: 182 -HADWEKIKEVKEAVNIPVIGNGDVIDGPSAKAMLELTGCDGVMISRGCQGNPWIFREIA 240 Query: 239 Y------NEPRMPWPEVVALLQKYTRLEKQGD-TGLYHVARIKQWLSYLRKEYDEA---T 288 + + + E + K+ ++ + ++ L++ + Sbjct: 241 HFLETGEELDKPSFAEWKETVLKHAKMLIDYKQDEGSAIREFRKHLTWYFAALPKTEILN 300 Query: 289 ELFQHVRVLNNSPDIARAIQAI 310 +L + +N D+ I+ Sbjct: 301 QLKEEANKINTFSDLENIIEKY 322 >UniRef50_B8FGI4 TIM-barrel protein, nifR3 family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FGI4_DESAA Length = 332 Score = 311 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 79/316 (25%), Positives = 132/316 (41%), Gaps = 16/316 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 ++ AP+ GV + +R + + L +E + + K + Sbjct: 13 LVCAPLAGVTNLPLRLMAKR-HGAALVCSEMISSNGLIRYQKKTMELMASK------EEE 65 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 + +Q+ G P LA++A E G+ VD+N GC K V G G+ L+ D + Sbjct: 66 RPLSIQIFGSDPGVLADSARIVAEHGADIVDINFGCSVKKVLKGGAGSALMADLPRAEKI 125 Query: 123 AKAMREAVPAHLPVSVKVRLGWD-SGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 K +R+A+ LP ++K+R GWD SG++ + Q AG + +H RT +QG+ H Sbjct: 126 LKEVRKAIS--LPFTIKMRSGWDASGDEAMALGRIAQDAGVDAVALHPRTAKQGFSG-HS 182 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNE 241 DW I ++Q L IPVI NG++ + + M +GCD VMIGR L P + R Sbjct: 183 DWSQIKRLKQELTIPVIGNGDVTKPEHVLEMMEQTGCDGVMIGRAVLYAPWIFRQALCLL 242 Query: 242 PRMPWPE-----VVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRV 296 P E +L Y + ++ L++ K A + + Sbjct: 243 ENRPMEEIDLDDRKKVLFDYLDDTMDYLGEEHGCRVMRSRLAWFVKGLPNAAKFRGEITR 302 Query: 297 LNNSPDIARAIQAIDI 312 + + I+ Sbjct: 303 IASKEQARDLIEEFFR 318 >UniRef50_C2KYD0 Dihydrouridine synthase n=4 Tax=Bacteria RepID=C2KYD0_9FIRM Length = 344 Score = 311 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 82/315 (26%), Positives = 136/315 (43%), Gaps = 18/315 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 +L+APM GV D R L E+ L TE V + Sbjct: 41 ILMAPMAGVTDLPYRILCKEMGL-SLSFTEMVSAKAIYYGNQNTD------SLLVHKGEP 93 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 LV QL G P +AE A R E G+D+N GCP V + G+ L+ + L Q Sbjct: 94 GLVSAQLFGSDPALMAEMACRIEE-DFDGIDVNMGCPVPKVVRNQEGSALMTNLPLAEQV 152 Query: 123 AKAMREAVPAHLPVSVKVRLGW-DSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 M +A+ P++VK R+G+ D E A + +G + +HGRT+EQ YR + Sbjct: 153 LSTMAKALKK--PLTVKFRIGFTDDAINVVEFAKMAEASGVASVTIHGRTREQYYRGK-A 209 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVV---- 237 +WQ I + ++ + IPV NG+I+ + A + +G D V + RG P L R Sbjct: 210 NWQYIKEAKEAVKIPVFGNGDIFQEEDALAMLLSTGVDGVALARGIQGNPFLIRACVSLL 269 Query: 238 --KYNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVR 295 P + E ++ ++ +L + + +++ LS+ + + A Q V Sbjct: 270 SEGKKLPPVSLSERKEMMLRHLKLMVEIKGEHLALLEMRKHLSWYMEGLENAARWRQRVN 329 Query: 296 VLNNSPDIARAIQAI 310 N+ + + ++ + Sbjct: 330 TENDLEKVFQMVREL 344 >UniRef50_A0M6M9 TRNA-dihydrouridine synthase n=16 Tax=Bacteroidetes RepID=A0M6M9_GRAFK Length = 330 Score = 310 bits (795), Expect = 4e-83, Method: Composition-based stats. Identities = 84/320 (26%), Positives = 138/320 (43%), Gaps = 19/320 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 +LLAPME V D R L E D+ TEF+ + Sbjct: 14 LLLAPMEDVSDPPFRALCKEQG-ADVVYTEFISSEGLI------REAAKSTMKLDIYEKE 66 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 V +Q+ G + + ++ + G +D+N GCP K V G GA +LKD +L+ Sbjct: 67 RPVGIQIFGANLESMLQSVEIVEKSGPDIIDINFGCPVKKVVSKGAGAGILKDIDLMVSL 126 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 +AM + LP++VK RLGWD K E+A+ +Q G + +HGRT+ Q Y+ E Sbjct: 127 TEAMVKNTS--LPITVKTRLGWDHDSIKIVEVAERLQDVGCKAISIHGRTRAQMYKGE-A 183 Query: 182 DWQAIGDIRQRL--NIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY 239 DW I +++ +IPV NG++ + A + G D MIGR ++ P R VK+ Sbjct: 184 DWAPIAEVKNNPRMHIPVFGNGDVDSPEKAMEMRDNFGLDGAMIGRASIGYPWFFREVKH 243 Query: 240 ------NEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQH 293 + E V +++ ++ V ++ + K E Sbjct: 244 YFETGKHLAPPTLEERVDAARRHLQMAIDWKGERLGVFETRRHYTNYFKGIPHFKEYRMK 303 Query: 294 VRVLNNSPDIARAIQAIDIE 313 + ++S D+ +A ++ E Sbjct: 304 MVTSDDSVDVFKAFDEVEKE 323 >UniRef50_C1A3V7 Putative tRNA-dihydrouridine synthase n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A3V7_GEMAT Length = 349 Score = 310 bits (794), Expect = 6e-83, Method: Composition-based stats. Identities = 83/314 (26%), Positives = 139/314 (44%), Gaps = 19/314 (6%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 + LAPM GV +S R L + D+ +TEF+ + P Sbjct: 16 LYLAPMAGVSESPFRRLC-HAHGADVVVTEFLSAEGI------RRENEATISKLRFAPEE 68 Query: 63 TLVRVQLLGQFPQWLAENAARAVELG-SWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + VQ+ G P +A+ AA ++ VD+N GCP K V GG+ LKD +L+ + Sbjct: 69 RPIGVQIFGSEPSAMADAAALVTDMFSPDFVDINFGCPVKKVVRRNGGSGCLKDLDLVEE 128 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSG-EKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 +A+ +A P LPV+VK R GW+ IA +Q AGA +H RT+ Q Y Sbjct: 129 IIRAVSKATP--LPVTVKTRSGWNEEMRDPVGIALRMQDAGAKVFALHARTRTQMYSG-S 185 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 +W I + + L+IPV+ NG+I A++ + + D +MIGRG+ P + + + Sbjct: 186 ANWDEIARVAEALDIPVLGNGDIKTALDAKRMLDHTKADGIMIGRGSYGQPWVFKQTRAL 245 Query: 241 EPRMPWP------EVVALLQKYTRLEKQGD-TGLYHVARIKQWLSYLRKEYDEATELFQH 293 P P E A+ + R+ + + + ++ L + K + EL Sbjct: 246 IDGTPVPETPGVQERFAIALDHARMVQGYEVDAIGAALEFRKHLGWYVKGLPNSAELRAK 305 Query: 294 VRVLNNSPDIARAI 307 + + + ++ Sbjct: 306 LHQVRDFAEVETIF 319 >UniRef50_D2NNX0 tRNA-dihydrouridine synthase n=3 Tax=Actinobacteridae RepID=D2NNX0_9MICC Length = 442 Score = 309 bits (793), Expect = 7e-83, Method: Composition-based stats. Identities = 80/321 (24%), Positives = 139/321 (43%), Gaps = 19/321 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 V+LAPM GV + R L +E L +TE V + R ++ P Sbjct: 78 VVLAPMAGVTNKAFRRLCSEYGG-GLYVTEMVTARALV------ERKPESMRIIEHDPDE 130 Query: 63 TLVRVQLLGQFPQWLAENAARAVELG-SWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + +Q+ G + + VE + +DLN GCP+ V GGGA L +L Sbjct: 131 KIRSIQIYGVDAVNVGKAVRMVVEEDRADHIDLNFGCPAPKVTRRGGGAALPWKTDLFTA 190 Query: 122 GAK-AMREAVPAHLPVSVKVRLGWDSGEKK-FEIADAVQQAGATELVVHGRTKEQGYRAE 179 + A++EA +P+++K+R G D E A + AG + +HGRT Q Y + Sbjct: 191 IVQTAVKEASRNDIPLTIKMRKGIDDDHITFLESAKIARDAGVAAIALHGRTAAQHYSGK 250 Query: 180 HIDWQAIGDIRQ-RLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK 238 DW +I +R+ ++P++ NG+I+ + A + + +G D V+IGRG P L ++ Sbjct: 251 -ADWDSIAQLRELIPDVPILGNGDIFSAEDAVRMVEQTGVDGVVIGRGCQGRPWLFGDLQ 309 Query: 239 YNEP------RMPWPEVVALLQKYTRLEKQ-GDTGLYHVARIKQWLSYLRKEYDEATELF 291 R EV ++ ++ L + + I++ +++ K Y EL Sbjct: 310 NAFEGSSERIRPTLTEVSDMIYRHAELLVETFGDETRGLREIRKHVAWYFKGYPVGGELR 369 Query: 292 QHVRVLNNSPDIARAIQAIDI 312 + + + I +D Sbjct: 370 AKMAQVPDLATFRELIAQLDH 390 >UniRef50_C7RGQ7 TIM-barrel protein, nifR3 family n=4 Tax=Anaerococcus RepID=C7RGQ7_ANAPD Length = 326 Score = 308 bits (789), Expect = 2e-82, Method: Composition-based stats. Identities = 76/316 (24%), Positives = 147/316 (46%), Gaps = 18/316 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 ++LAPM G+ DS R++ E N D TE V V + I S Sbjct: 10 IMLAPMAGITDSAFRQICEE-NGCDKTFTEMVSVNALDFNNRATEEIMYTAY------SE 62 Query: 63 TLVRVQLLGQFPQWLAENAARAVEL--GSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 +Q+ G+ + + + N GCP+ + +G G+ L++D + +Y Sbjct: 63 KNCNIQIFGKDCDIIERVIKDKINPREDFEEISFNMGCPAPKIFNNGQGSALMRDVKKVY 122 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRAE 179 + K ++E V+VK+R+G D E+ A++ +G +++HGRT++Q Y + Sbjct: 123 EIGKCLKE--STDKIVNVKIRMGIDDDSVNYIEVGKALEDSGIDYVILHGRTRKQQYSGK 180 Query: 180 HIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK- 238 +WQAI +++ L+IPVIANG+++ + + + +G D VMI RGA+ P + R +K Sbjct: 181 -ANWQAIRKLKETLSIPVIANGDVFSVKDYKDILDETGADGVMIARGAMGNPFIFRQIKD 239 Query: 239 ----YNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHV 294 + + +++A +++ L + + ++++ + + K +A V Sbjct: 240 YIQGKETSPISYEDILATIKRQYELSLKYKKEKLVINQMRKHVGWYIKGLPQAASYRDRV 299 Query: 295 RVLNNSPDIARAIQAI 310 L S +I ++ Sbjct: 300 NKLKTSEEIFDLLEEY 315 >UniRef50_A6CBK4 Predicted TIM-barrel enzyme, possibly dehydrogenase, nifR3 family protein n=2 Tax=Planctomycetaceae RepID=A6CBK4_9PLAN Length = 365 Score = 307 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 83/320 (25%), Positives = 143/320 (44%), Gaps = 17/320 (5%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 R LL+P+ G + R ++ E+ L T+ V L + LQ P Sbjct: 29 RYLLSPLAGYTNLPFRRIVRELGGVGLATTDLVNARGLLEGSEKT------LQLTQTCPE 82 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + VQ+ G PQ + + A G +D+N GCP + G GA+++ P Sbjct: 83 DSPFAVQIFGSEPQQMKDAAQLLESRGVHSIDINMGCPVNRIVKGGAGASMMCRPSDTVS 142 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 + + EAV +PVSVK+RLGWD E + ++ G + +HGRT+EQG+R Sbjct: 143 LVQTVVEAVK--IPVSVKMRLGWDDSELSAPFFSREFEKVGVVAVAIHGRTREQGFRG-V 199 Query: 181 IDWQAIGDIRQRLN-IPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY 239 ++ I + + ++ IPVI NG++ + A + +GC V IGRGAL P + R + Sbjct: 200 VNHDGIRRVVEAVDSIPVIGNGDVTNVAEADFMLKTTGCAGVSIGRGALANPWIFRQLVQ 259 Query: 240 NE------PRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQH 293 E P + + + LL + R + T ++ ++ + K + Sbjct: 260 WEQTGTYDPPGNFDDRLELLLRQFRYLLEMTTEKRAISMFRKMGHWYLKSMRVKPAMRHE 319 Query: 294 VRVLNNSPDIARAIQAIDIE 313 ++ +N + +A++ I E Sbjct: 320 FQLASNLDEFGQAVRKIAAE 339 >UniRef50_Q9JUP6 tRNA-dihydrouridine synthase C n=23 Tax=Neisseriaceae RepID=DUSC_NEIMA Length = 333 Score = 307 bits (786), Expect = 4e-82, Method: Composition-based stats. Identities = 126/318 (39%), Positives = 191/318 (60%), Gaps = 7/318 (2%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 R++LAPM+G++D ++R+LLT + YD C++EFVR+ + + + PE+ N ++T S Sbjct: 14 RIILAPMQGLVDDVMRDLLTRIGGYDECVSEFVRITHTVHSRATWLKYVPEIANGNKTFS 73 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 GT VQLLG +A NA AV G+ +DLN GCP+ TVN GGA LLK+PELI+ Sbjct: 74 GTPCTVQLLGSDADNMAANALEAVRFGADKIDLNFGCPAPTVNRHKGGAILLKEPELIFH 133 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 K +RE +PAH+P++ K+RLG++ E A A+ + GA L VH RTK +GY Sbjct: 134 IVKTLRERLPAHIPLTAKMRLGYEDKSPALECACAIAEGGACGLTVHARTKAEGYE-PPA 192 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNE 241 W+ I IR ++IPV ANG+++ Q ISGC++VM+GRGA+ P+L+R +K E Sbjct: 193 HWEWIRKIRDSVDIPVTANGDVFSLQDYIGIKTISGCNSVMLGRGAVIRPDLARQIKQYE 252 Query: 242 PRMPWP-----EVVALLQKYTRLEKQGD-TGLYHVARIKQWLSYLRKEYDEATELFQHVR 295 P EV ++++ L + Y +AR+KQWL ++K +D A LF VR Sbjct: 253 NGGPVKDTDFAEVSKWIRQFFELCLTKEANNKYPIARLKQWLGMMKKTFDPAQTLFDRVR 312 Query: 296 VLNNSPDIARAIQAIDIE 313 + ++ ++ R + A + E Sbjct: 313 TVKDADEVRRILNAFEHE 330 >UniRef50_C5TM05 tRNA-dihydrouridine synthase C n=5 Tax=Neisseriaceae RepID=C5TM05_NEIFL Length = 321 Score = 306 bits (785), Expect = 6e-82, Method: Composition-based stats. Identities = 115/319 (36%), Positives = 193/319 (60%), Gaps = 7/319 (2%) Query: 1 MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTP 60 M+++LAPM+G++D ++R+LLT + +D C++EFVR+ + + + PE+ +A+RT Sbjct: 1 MQLILAPMQGLVDDVMRDLLTRIGGFDECVSEFVRITHTVHSRATWLKYVPEIAHANRTT 60 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 +GT VQLLG + +A NA AV G+ +DLN GCP+ TVN GGA LLK+P+LIY Sbjct: 61 AGTPCTVQLLGSDAENMAVNALEAVRFGADKIDLNFGCPAPTVNKHKGGAVLLKEPDLIY 120 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 +R+ +P H+P++ K+RLG++ E A A++ GA L VH RTK +GY Sbjct: 121 HIVHTLRQRLPQHIPLTAKMRLGYEDKSLALECASAIENGGACALTVHARTKVEGYE-PP 179 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 W+ + IR +NIPV ANG++++ Q ++SGC++VM+GRGA+ P+L+R +K Sbjct: 180 AHWEWVRKIRDAVNIPVTANGDVFNLQDYLDIKSVSGCNSVMLGRGAVIRPDLARQIKQY 239 Query: 241 EPRMPWPEVV------ALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHV 294 E + ++Q + + + Y V+R+KQWL ++KE+++A LF + Sbjct: 240 ENGETVKDTDFAEVSSWIVQFFDLCLAKEASNKYPVSRLKQWLGMMKKEFEQAQVLFDRI 299 Query: 295 RVLNNSPDIARAIQAIDIE 313 R + + ++ + + + + E Sbjct: 300 RAIKEADEVKQILLSFEQE 318 >UniRef50_C6JNK3 Dihydrouridine-tRNA ligase n=4 Tax=Fusobacterium RepID=C6JNK3_FUSVA Length = 320 Score = 306 bits (785), Expect = 6e-82, Method: Composition-based stats. Identities = 81/316 (25%), Positives = 149/316 (47%), Gaps = 16/316 (5%) Query: 1 MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTP 60 +++ AP+ GV D R +L E DL TE V + + + ++ L+ Sbjct: 2 IKIYTAPIAGVTDYTYRGILKEF-KPDLLFTEMVSINALEVACEKTLKVILRLREGD--- 57 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 VQL G+ + + E+A LG +D+N GCP K + +G GA L++ PEL+ Sbjct: 58 -----SVQLFGKDIKKMVESAKFVESLGVKHIDINSGCPMKKIVNNGYGAALMEQPELVK 112 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 +R A+ +S+K+R+G+ + EIA Q+ G + +HGRT+EQ Y + Sbjct: 113 AMLSEVRSALNDKTDLSIKIRVGYKESKNPVEIAKIAQETGCKHITIHGRTREQMYTGK- 171 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 DW I ++++ ++IPVI NG+I+ + A++ + SG D +M+ RG P L R ++ Sbjct: 172 ADWSIIKEVKESVDIPVIGNGDIFTAEDAKERVDYSGVDGIMLARGIFGNPWLIRDIREY 231 Query: 241 ------EPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHV 294 + E + + K+T+ + + +++ L + K E+ + Sbjct: 232 FEYGKILHPVTDIEKIDMAIKHTKRTEVEHPERPFIFELRKHLCWYLKGIRNTAEIKDKI 291 Query: 295 RVLNNSPDIARAIQAI 310 +N +I + + Sbjct: 292 NHTDNYNEIVELLNRV 307 >UniRef50_C1F4Z7 Putative tRNA-dihydrouridine synthase n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F4Z7_ACIC5 Length = 398 Score = 306 bits (785), Expect = 6e-82, Method: Composition-based stats. Identities = 89/344 (25%), Positives = 146/344 (42%), Gaps = 40/344 (11%) Query: 4 LLAPMEGVLDSLVRELLT---------------------EVNDYDLCITEFVRVVDQLLP 42 +LAPM GV D++ R + + + L +TEF Sbjct: 35 VLAPMAGVTDTVFRRFIRNASLFAEGGAGAANVDREVTNQQSGCGLIMTEFTSADGLSKM 94 Query: 43 VKVFHRICPELQNASRTPSGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKT 102 + + + + + QL G P+ LAE A + G VDLN GCP+K Sbjct: 95 RESKRK-----RYLTFYEDEHPIAAQLFGSNPETLAEGARIVEDTGFDMVDLNLGCPAKR 149 Query: 103 VNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVSVKVRLGWDSGEKK-FEIADAVQQAG 161 V GG+ LL+D LI + +A+R AV +P +VK RLGW+ +A +++G Sbjct: 150 VVACNGGSGLLRDLPLIAKIFEAVRGAVK--IPFTVKFRLGWNDQHIICVPLARLAEESG 207 Query: 162 ATELVVHGRTKEQGYRAEHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAV 221 + +H RT+EQGY + W+ I +++ + IPVI NG++ + A +A +GCD V Sbjct: 208 LNAVSLHARTREQGYSGQ-ARWEHIAEVKDAVRIPVIGNGDVRTPEDACALVAKTGCDGV 266 Query: 222 MIGRGALNIPNLSRVVK-----YNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVAR---- 272 MIGR A P + R + + +++ Y + H +R Sbjct: 267 MIGRAAPANPWIFRQIAQYTATGRYDEPSEADRYQMIRTYFEMLLDEGREDEHASRAAEG 326 Query: 273 -IKQWLSYLRKEYDEATELFQHVRVLNNSPDIARAIQAIDIEKL 315 +KQ+ S+ L + + P I A++ +L Sbjct: 327 KMKQFASWFTHGVPGGAGLRKSIYEAKTGPKILDAVERFFETRL 370 >UniRef50_P44965 tRNA-dihydrouridine synthase B n=20 Tax=Pasteurellaceae RepID=DUSB_HAEIN Length = 330 Score = 305 bits (783), Expect = 1e-81, Method: Composition-based stats. Identities = 83/318 (26%), Positives = 146/318 (45%), Gaps = 17/318 (5%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 RVLLAPM G+ D R L L +E + Q+ + ++ Sbjct: 11 RVLLAPMAGITDQPFRRLCA-YYGAGLTFSEMMSTNPQVWHTEKSKLRLAHSEDLGLN-- 67 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 VQ+ G P +A+ AA VE G+ +D+N GCP+K VN G+ LL+ P+L+ + Sbjct: 68 ----AVQIAGSDPLEMAQAAAINVEYGAQIIDINMGCPAKKVNRKLAGSALLQFPDLVEK 123 Query: 122 GAKAMREAVPAHLPVSVKVRLGWD-SGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 + + AV ++PV++K+R GWD S +I +Q G L VHGRT+ + E Sbjct: 124 ILREVVSAV--NVPVTLKIRTGWDKSNRNCVQIGKIAEQCGIQALTVHGRTRACLFEGE- 180 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 ++ I ++Q + IPVIANG+I + A+ + +G DA+MIGR AL P L + V+ Sbjct: 181 AEYDNIKAVKQAIAIPVIANGDIDSARKAKFVLNYTGADAIMIGRAALGNPWLFQAVENL 240 Query: 241 EPRMPWPEVVAL------LQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHV 294 ++ +L + ++ + Q ++ +++ + + Q Sbjct: 241 IEHNSISQMPSLKEKCGQILRHIQELHQFYGEQKGYRIARKHVAWYLQGIQPDSVFKQTF 300 Query: 295 RVLNNSPDIARAIQAIDI 312 +++ + ++ Sbjct: 301 NAISDPKEQLIVLEDFFN 318 >UniRef50_UPI0001BC5FF0 nitrogen regulation protein NIFR3 n=1 Tax=Fusobacterium sp. D12 RepID=UPI0001BC5FF0 Length = 322 Score = 305 bits (783), Expect = 1e-81, Method: Composition-based stats. Identities = 82/315 (26%), Positives = 147/315 (46%), Gaps = 16/315 (5%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 ++ +AP+ GV D R +L E DL TE V L++ + Sbjct: 3 KIFIAPIAGVTDYTYRGILEEF-QPDLLFTEMVSSDALAALNDKTISQILRLRSGN---- 57 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 VQL G+ + + +A +LG +D+N GCP K V SG G+ LLK PE I + Sbjct: 58 ----GVQLFGKDTEKMIYSAKYIEKLGVKNIDINAGCPMKRVVHSGHGSALLKSPEKIKE 113 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 +RE + +S+K+R+G+D E +IA ++AG + + VHGRT+ Q Y Sbjct: 114 ILFTLREQLEESTKLSIKIRVGYDRPENYLQIAKIAEEAGCSHITVHGRTRAQLYTG-LA 172 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNE 241 DW I +I++ + IPVI NG+I+ ++A++ + SG D VM+ RG P L R ++ Sbjct: 173 DWSLIKEIKEHVTIPVIGNGDIFTAEAAKEKIEDSGVDGVMLARGIFGNPWLIRDIREML 232 Query: 242 ------PRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVR 295 ++ + + + + ++ + V +++ + + K + E + Sbjct: 233 QYGEVKTKVSTEDKIDMAIHHILKTEEDNPQREFVFDVRKHICWYLKGIPHSAEYKNRIN 292 Query: 296 VLNNSPDIARAIQAI 310 + + + +Q + Sbjct: 293 QSTDYKAVVQLLQEL 307 >UniRef50_Q1RH84 Probable tRNA-dihydrouridine synthase n=59 Tax=Alphaproteobacteria RepID=DUS_RICBR Length = 326 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 82/315 (26%), Positives = 150/315 (47%), Gaps = 16/315 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 ++LAPM GV D R L+ L ++E + ++ + + C +Q+ + + Sbjct: 13 IILAPMSGVTDLEFRRLVKRFG-AGLVVSEMIASRAMIVESRQSLQKCSIMQDDATSAC- 70 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 VQL G P +AE A ++G+ +DLN GCP+K V G+ L++D L + Sbjct: 71 ----VQLAGCEPNVIAEAAKMNEDMGAKIIDLNFGCPAKKVVNGYSGSALMRDEGLAAKI 126 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSG-EKKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 +A +AV +PV+VK+R+GWD + +A +++G + VHGRT+ Q Y + Sbjct: 127 FEAAVKAVK--IPVTVKMRMGWDDQTKNAPTLAKIAERSGIQMVTVHGRTRCQFYSG-NA 183 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNE 241 DW+ I ++++ + IPVIANG+I ++ A++ + S D VM+GRGA P L + + Sbjct: 184 DWEFIKNVKEAVKIPVIANGDITNFAKAKEALEKSSADGVMVGRGAYGKPWLISQIDHYL 243 Query: 242 ------PRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVR 295 P + ++ ++ + V ++ + + + E V Sbjct: 244 KTGEEKPAPSIESQLDIVLEHYQAIVDYYGESAGVPIARKHMGWYSSGLPNSAEFRGAVN 303 Query: 296 VLNNSPDIARAIQAI 310 ++N+ + I Sbjct: 304 LMNDPIAVKDKIVEF 318 >UniRef50_Q1NXZ7 Dihydrouridine synthase TIM-barrel protein nifR3 n=3 Tax=Deltaproteobacteria RepID=Q1NXZ7_9DELT Length = 313 Score = 304 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 86/310 (27%), Positives = 142/310 (45%), Gaps = 14/310 (4%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 ++ AP+ G D R L E LC +E + + R ++ + T + Sbjct: 15 LVAAPLAGYSDLPFRLLCREYG-AGLCYSEMLSCHGLV------RRQPATIEMLATTAAE 67 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 + +QL G P+ + E AA L G+D+N GCP + V G GA L++DPEL Sbjct: 68 RPLLMQLFGAEPEVMGEAAAILSRLPIDGIDINMGCPVRKVVKKGAGAALMRDPELAAAI 127 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 A+ A LPV+VK+R GW+ + + A + GA + +H RT G+ Sbjct: 128 TGAVTAAAG-DLPVTVKIRSGWNHKQINAPDFARLLVAHGAAAVTIHARTWSDGFTGR-A 185 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNE 241 DW I +++ +++PVI NG+I ++ A MA +GCD VMIGRGAL P + Sbjct: 186 DWAVIAAVKRAVSVPVIGNGDIGSYEQALAMMAATGCDGVMIGRGALGAPWVFTPGAEQN 245 Query: 242 PRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLN-NS 300 P P + +A +++ L + AR++ L K+ L + + N + Sbjct: 246 P--PLAQRLAAARRHLELIRHWRPADN-PARVRNQLGRYFKKIPGGARLRRQIYDHNGSI 302 Query: 301 PDIARAIQAI 310 + + + + Sbjct: 303 DQLEQLLAGL 312 >UniRef50_Q6MRF1 Transcription regulator homolog yacF n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MRF1_BDEBA Length = 337 Score = 303 bits (776), Expect = 7e-81, Method: Composition-based stats. Identities = 81/319 (25%), Positives = 138/319 (43%), Gaps = 23/319 (7%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 +LAPM G+ D R + ++ D + +TE V L+ S S Sbjct: 12 FVLAPMAGITDHAFRTFIKKL-DASVVVTELVSASGIEYKSDRT------LKLMSFDESQ 64 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 + +QL G+ P+ +A A A G VDLN GCP V G G+ +LKDP + + Sbjct: 65 RPIGIQLFGEEPEIVARAAQVAEADGCDFVDLNFGCPVPKVVKKGAGSAILKDPAAVQKM 124 Query: 123 AKAMREAVPAHLPVSVKVRLGWD-SGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 ++ A+ +P+++K+R GWD + EI + G + + +HGRT+ Q Y Sbjct: 125 VSTVKAAIK--IPLTIKIRTGWDANSRNATEICNIAYNEGVSWVAIHGRTRAQSYTG-LA 181 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNE 241 DW I D++ IP++ NG+I + A + SGCD VMIGRG L P + Sbjct: 182 DWDFIADVKANTKIPILGNGDILTPRQANLRLQQSGCDGVMIGRGCLKNPFIFMDALSLW 241 Query: 242 PRMPWPEVVALLQKYT--------RLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQH 293 P +V + Y + D + + ++++ ++ Y A + ++ Sbjct: 242 RGEPIKDVK---RDYVSLFQGLQKEIVAHCDEHITGIQ-LRKFAAWFSTGYSGAAQFRKN 297 Query: 294 VRVLNNSPDIARAIQAIDI 312 + ++ +I Sbjct: 298 LFQSKSNDEIMALANEFFA 316 >UniRef50_A8ZYE4 Putative TIM-barrel protein, nifR3 family n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZYE4_DESOH Length = 326 Score = 302 bits (775), Expect = 8e-81, Method: Composition-based stats. Identities = 80/312 (25%), Positives = 135/312 (43%), Gaps = 16/312 (5%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 R +LAP+ G+ D+ R L L +E V + TP Sbjct: 11 RTILAPLAGITDAPFRRLAKAAG-CALVYSEMVSSHGLFYQSEKT------GAMLRTTPE 63 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 VQ+ G P + AA G+ +D+N GC K + SG GA L+KD L + Sbjct: 64 EAPFAVQIFGGKPAVMGRAAAMVQASGAHMIDINFGCSVKKILKSGAGAALMKDLPLAAE 123 Query: 122 GAKAMREAVPAHLPVSVKVRLGWD-SGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 +A+R+AV +P+++K+R GW+ G F +A+ + G + +H RT QG+ Sbjct: 124 VIQAVRDAVS--IPLTIKMRSGWNPDGSDAFHLAEIAEARGVNAVALHPRTATQGF-GGT 180 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 DW I ++QR +PVI NG+I + A++ + +GCDAVM+GR A+ P + + + Sbjct: 181 ADWSLIAALKQRTGLPVIGNGDIVLPEDARRMLDQTGCDAVMVGRAAIGAPWIFKQINAC 240 Query: 241 EPRMPWPE-----VVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVR 295 P E ++ +Y ++ L + + T + +R Sbjct: 241 LAGKPVVEPSLEHRFEVMSEYINAMVAHYGEDLACRVMRSRLGWFTRAMPHGTLFRESIR 300 Query: 296 VLNNSPDIARAI 307 + + A+ Sbjct: 301 RIETKDQVLAAV 312 >UniRef50_Q31II6 Dihydrouridine synthase n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31II6_THICR Length = 320 Score = 302 bits (774), Expect = 1e-80, Method: Composition-based stats. Identities = 85/316 (26%), Positives = 143/316 (45%), Gaps = 17/316 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 + LAPM G+ D + R++ E + ++E V QL ++A +T + Sbjct: 12 IALAPMAGITDRVYRDICRE-SGASYAVSEMVASKKQLRESAK-----SSTRHADKTET- 64 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 + VQLLG P+ L + A G+ +DLN GCP+K V G+ L+ PE + Sbjct: 65 SPRIVQLLGTHPEELVDAALWQQSQGADIIDLNMGCPAKKVCDVAAGSALMGQPERVADI 124 Query: 123 AKAMREAVPAHLPVSVKVRLGWD-SGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 K++ EA+ LPV+VK+R G D EIA Q+ G + +HGRT+ + + Sbjct: 125 FKSLTEAI--DLPVTVKIRTGTDVDNINAVEIAKLAQELGLKAITIHGRTRADKFNGQ-A 181 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY-- 239 ++ I ++Q ++IPVIANG+I + AQ + +G D +MIGR A P + R + + Sbjct: 182 EYDTIKAVKQAVDIPVIANGDICSPKEAQFVLKYTGSDGIMIGRAAQGYPWIFREIAHFL 241 Query: 240 ----NEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVR 295 P + E ++ ++ + ++ L + + TEL + Sbjct: 242 KTGDCLPSPSFAEFQQVMTRHFSELEILYGEHLGHKIARKHLGWYSQYLPNGTELRKRFN 301 Query: 296 VLNNSPDIARAIQAID 311 L N+ I Sbjct: 302 RLENTQAQLNLINHYF 317 >UniRef50_Q9KV66 tRNA-dihydrouridine synthase B n=56 Tax=Proteobacteria RepID=DUSB_VIBCH Length = 322 Score = 302 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 81/316 (25%), Positives = 146/316 (46%), Gaps = 17/316 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 +++APM GV D REL + ++E + + Sbjct: 12 LIVAPMAGVTDRPFRELCLRYG-AGMAVSEMMSC------NPALWKTAKSQNRMVHEGES 64 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 + VQ+ G PQ +AE A +VE G+ +D+N GCP+K VN G+ LL+ P++I Sbjct: 65 GIRSVQIAGSDPQLMAEAAQFSVENGAQIIDINMGCPAKKVNKKLAGSALLRYPDVIEDI 124 Query: 123 AKAMREAVPAHLPVSVKVRLGWD-SGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 KA+ AV + ++K R GWD + IA + G L +HGRT+ Y+ E Sbjct: 125 LKAVVNAVNVPV--TLKTRTGWDTDNKNCLSIAQLAEDCGIQALALHGRTRACMYKGE-A 181 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY-- 239 ++ +I ++ ++IPVIANG+I + A+ + +G DA+MIGR A P + + +++ Sbjct: 182 EYDSIKAVKAAVSIPVIANGDIDSPEKARYVLEYTGADALMIGRPAQGRPWIFQEIQHFL 241 Query: 240 ----NEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVR 295 P +P EV ++ + Q ++ +S+ +E+++A+ + Sbjct: 242 EHGTTMPELPISEVKDIMLGHVTALHQFYGEYLGPRIARKHVSWYLQEHEQASAFRRTFN 301 Query: 296 VLNNSPDIARAIQAID 311 + + A++ Sbjct: 302 AIETADQQLDALEGYF 317 >UniRef50_C1ZDL9 Putative TIM-barrel protein, nifR3 family n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZDL9_PLALI Length = 385 Score = 300 bits (770), Expect = 3e-80, Method: Composition-based stats. Identities = 84/318 (26%), Positives = 141/318 (44%), Gaps = 17/318 (5%) Query: 1 MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTP 60 R LL+P+ G + R ++ E+ L T+ V L + L+ + P Sbjct: 48 FRTLLSPLAGFTNLPFRRVVHELGGLGLGTTDLVNARGLLAGSEKT------LRLIATHP 101 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 VQ+ G + + A G +D+N GCP V +G GA+L+ + Sbjct: 102 IDRPFAVQIFGGEASIMRDAAQLLEARGVDSIDINMGCPVLKVVKTGAGASLMCHADAAT 161 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKK-FEIADAVQQAGATELVVHGRTKEQGYRAE 179 + KA+ EAV H+PV+VK+RLGWD+ + A +Q G + +HGRT+ QG+ Sbjct: 162 ELVKAVVEAV--HVPVTVKMRLGWDASQLTAPRFAREFEQVGVAAVAIHGRTRAQGFSGT 219 Query: 180 HIDWQAIGDIRQRLN-IPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK 238 ++ I + + ++ IPVIANG+I A +GC A+ IGRGAL P + R + Sbjct: 220 -VNRDGIRQVVEAVDSIPVIANGDIRSVDDAIAMYDETGCQAISIGRGALANPWIFRQLT 278 Query: 239 YNEPRMPW------PEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQ 292 E W + + L+++ R ++ V+ ++ + K L Sbjct: 279 EWETTGDWAPAGSFNDRLLLMRRQFRYLQEWVGEETAVSAFRKMSHWYTKAMRVGPALRH 338 Query: 293 HVRVLNNSPDIARAIQAI 310 V+ + +A+Q I Sbjct: 339 AVQSAKTGEEFEQALQEI 356 >UniRef50_Q2RZL4 NifR3 family enzyme n=2 Tax=Rhodothermaceae RepID=Q2RZL4_SALRD Length = 443 Score = 300 bits (769), Expect = 4e-80, Method: Composition-based stats. Identities = 79/312 (25%), Positives = 130/312 (41%), Gaps = 19/312 (6%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 + LAPME V D R L D+ TEFV L + E Q Sbjct: 77 LFLAPMEDVSDPPFRILCKRYG-ADMMYTEFVSSAGLLREQEH------EHQKLEIFDEE 129 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 + +Q+ G + G +D+N GCP + + GGA +L++ + + Sbjct: 130 RPIGIQVWGGGIDEVRNATPMVDAAGPDVIDINFGCPVRKIVQKDGGAGVLRNLDKMRNI 189 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGEK-KFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 A+ E A PV+VK RLGWD ++A ++ G L VH RT+EQ Y+ + Sbjct: 190 TAAVMEE--ATRPVTVKTRLGWDDDSIHIVDVARMLEDMGVAALTVHARTREQKYKGD-A 246 Query: 182 DWQAIGDIRQRL--NIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK- 238 W+ + I++ ++P I NG+ D ++ + +G D VM+GRGAL P + K Sbjct: 247 RWEWLRTIKEEGTRDMPFIGNGDALDPEAIEAMFEETGVDGVMLGRGALGNPWIFERAKT 306 Query: 239 -----YNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQH 293 P W E V ++ ++ L+ + V +++ S K + A+ L Sbjct: 307 YMETGELPPPPDWEERVQVVAEHLSLKCEWLGERTGVMEMRKNYSSYFKGFRNASTLRHE 366 Query: 294 VRVLNNSPDIAR 305 + + Sbjct: 367 LMQPETKAGVLE 378 >UniRef50_A7H1K2 tRNA-dihydrouridine synthase B n=14 Tax=Campylobacter RepID=A7H1K2_CAMJD Length = 308 Score = 300 bits (768), Expect = 6e-80, Method: Composition-based stats. Identities = 76/310 (24%), Positives = 137/310 (44%), Gaps = 14/310 (4%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 + LAPM G D R ++ + D+ I+E + + L R Sbjct: 9 LFLAPMAGFSDLPFRNVVKKFG-ADITISEMISSNALVY------ESSKTLHMLERAELE 61 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGS-WGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 VQ+ G + L + ++ G+D NCGCP V G+ LL++ EL Sbjct: 62 NPYIVQIAGGDKEVLKKAVQMLNKMDFVDGIDFNCGCPVNKVVKQCAGSALLENLELFKN 121 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 ++E L SVK RLG++ ++A + G + VHGRT++Q Y + Sbjct: 122 LVGVIKENNKKSLT-SVKFRLGFNEKYP-EKMAKICESLGVDFVSVHGRTRKQLYSGK-A 178 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNE 241 D+++I + + IPVIANG+I + Q+A++ I+ CD +MIGR ++ P + +K + Sbjct: 179 DYESIASAKASVKIPVIANGDI-NAQNAKEVYKITKCDGLMIGRASVGNPWIFYEIKSGK 237 Query: 242 PRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNNSP 301 + +L + + K V+ ++ L K + +A+ V ++N+ Sbjct: 238 SVDEKLKKEIILTHFDEMIKHYKDQ--GVSIFRKHLHEYSKGHKDASAFRDGVNRIDNAE 295 Query: 302 DIARAIQAID 311 + + I+ Sbjct: 296 KMRKKIEEFF 305 >UniRef50_B8DSX5 Possible NifR3-like protein n=15 Tax=Bifidobacterium RepID=B8DSX5_BIFA0 Length = 417 Score = 299 bits (767), Expect = 7e-80, Method: Composition-based stats. Identities = 81/320 (25%), Positives = 134/320 (41%), Gaps = 18/320 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 V+L+PM GV + R L E L + E V + R L+ PS Sbjct: 52 VMLSPMAGVTNWPFRVLCEEYGPDGLYVAEMVTARALV------ERNPKALRLCRFAPSE 105 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGS-WGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + +QL G P + + A V+ G +DLN GCP V GGG+ L +L + Sbjct: 106 RIRSLQLYGVNPSIMEQAARFLVDNGMMDHLDLNFGCPVPKVTRRGGGSALPWKTDLFTE 165 Query: 122 GAKAMREAV-PAHLPVSVKVRLGWDSGEKK-FEIADAVQQAGATELVVHGRTKEQGYRAE 179 + + PA++PV+ K+R+G D + E Q+ G + + +H RT + Y Sbjct: 166 IVQRVVAVCEPANIPVTAKIRVGLDHEHETFLEAGRIAQEEGCSAVTLHARTTAE-YYGG 224 Query: 180 HIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY 239 H DW IG++ L+IPV NG+IW + A + +GC V IGRG P L + Sbjct: 225 HSDWCRIGELVSTLDIPVFGNGDIWGAEDAIAMVNETGCAGVAIGRGCQGRPWLFGNIGN 284 Query: 240 NEPR------MPWPEVVALLQKYTRLEKQGD--TGLYHVARIKQWLSYLRKEYDEATELF 291 EV ++ ++ L + V +++ +++ K + Sbjct: 285 AFAGSDVRINPTLGEVGRIIMRHAELLTEFYDGDERMAVHDLRKHVAWYLKGFPVGGSTR 344 Query: 292 QHVRVLNNSPDIARAIQAID 311 + + D+ + A+D Sbjct: 345 RAFMECESLKDVREQVDALD 364 >UniRef50_A7S213 Predicted protein n=1 Tax=Nematostella vectensis RepID=A7S213_NEMVE Length = 570 Score = 299 bits (766), Expect = 8e-80, Method: Composition-based stats. Identities = 76/325 (23%), Positives = 138/325 (42%), Gaps = 24/325 (7%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 ++ LAP+ + + R + + D+ E + L + E R S Sbjct: 219 KLYLAPLTTIGNLPFRRICKQYG-ADITCGEMAMCTNLLQGQQ------SEWALVKRHSS 271 Query: 62 GTLVRVQLLGQFPQWLAENAARAV-ELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 + VQL G FP + + A E +D+N GCP V G G+ L++ + Sbjct: 272 EDIFGVQLCGAFPDTMTKCAELLQKETDVDFIDINTGCPIDLVFNKGAGSALMERKGKLQ 331 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGE---KKFEIADAVQQAGATELVVHGRTKEQGYR 177 Q + M+ + +P++VK+R G + ++ ++ G + +HGR++EQ Y Sbjct: 332 QIVQGMKSVI--DIPLTVKIRAGIHDKKYTWNAHKLVGNLRDWGTDMVTIHGRSREQRY- 388 Query: 178 AEHIDWQAIGDIRQ-RLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRV 236 + DW I ++ + +PV NG+I ++ A Q +G VMI RGA+ P + Sbjct: 389 TKSADWDYISEVAKLASPMPVFGNGDILSFEDAMQHRKQAGVAGVMIARGAIIKPWIFTE 448 Query: 237 VKY-NEPRMPWPEVVALLQKYTR--LEKQGDT--GLYHVARI-KQWLSYLRKEYDEATEL 290 +K + E + +L+++ LE G G+ R +WLS+ + L Sbjct: 449 IKEQRHWDISSSERLDILRQFVNAGLEHWGSDTQGVEKTRRFLLEWLSFTCRYVPVG-LL 507 Query: 291 FQHVRVLNNSPDIARAIQAIDIEKL 315 + + +N+ P D+E L Sbjct: 508 ERLPQRINDRPP--AYFGRNDLETL 530 >UniRef50_D2RA64 TIM-barrel protein, nifR3 family n=5 Tax=Actinobacteridae RepID=D2RA64_GARVA Length = 384 Score = 298 bits (765), Expect = 1e-79, Method: Composition-based stats. Identities = 78/320 (24%), Positives = 134/320 (41%), Gaps = 18/320 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 V+L+PM G+ + R + E L + E + + R L+ PS Sbjct: 19 VVLSPMAGITNWPFRVICREFGPDGLYVAEMITARALV------ARNPKALRLCRFAPSE 72 Query: 63 TLVRVQLLGQFPQWLAENAARAVELG-SWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + +QL G P + + V+ + VDLN GCP V GGG+ L +L+ + Sbjct: 73 KVRSLQLYGVNPSIVEQATRIVVDENMADHVDLNFGCPVPKVTRRGGGSALPWKTDLLQE 132 Query: 122 GAKAMREAV-PAHLPVSVKVRLGWDSGEKK-FEIADAVQQAGATELVVHGRTKEQGYRAE 179 + PA +PV+ K R+G D + + Q+ G + +H RT + Y Sbjct: 133 ILHRVVSVCEPAGIPVTAKFRVGIDENHETFIQAGHIAQEEGCAAVTLHARTTAE-YYGG 191 Query: 180 HIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY 239 H DWQ IG++ + L+IPV NG+IW + A +GC V IGRG P L ++ Sbjct: 192 HSDWQRIGELVETLDIPVFGNGDIWGAEDALAMFKETGCAGVAIGRGCQGRPWLFADIRN 251 Query: 240 ------NEPRMPWPEVVALLQKYTRLEKQGD--TGLYHVARIKQWLSYLRKEYDEATELF 291 N EV +++ ++ L + V +++ +++ K + Sbjct: 252 ACEGSDNRVNPTLAEVGSVILRHLNLLVEFYDGDERMAVHDLRKHIAWYLKGFPVGGGTR 311 Query: 292 QHVRVLNNSPDIARAIQAID 311 + + D+ R + +D Sbjct: 312 KAFMECESIEDVQRNLDMLD 331 >UniRef50_B9L781 tRNA-dihydrouridine synthase B n=1 Tax=Nautilia profundicola AmH RepID=B9L781_NAUPA Length = 313 Score = 298 bits (765), Expect = 1e-79, Method: Composition-based stats. Identities = 73/313 (23%), Positives = 130/313 (41%), Gaps = 16/313 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 LAP+ G D R ++ + D+ +E V + ++ ++P Sbjct: 13 FFLAPLAGYTDLPFRSVVKKFG-CDMTFSEMTNVNAIAYQNEKTQKMME------KSPLE 65 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGS-WGVDLNCGCPSKTVNGSGGGATLLKD--PELI 119 VQ+ + + EL G+D+N GCP SG G LLKD + + Sbjct: 66 NPYFVQIAANNVENAVKAVEIINELNWIDGIDINLGCPVNKARRSGFGGVLLKDENRDFL 125 Query: 120 YQGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAE 179 + + + + PVS K+R+G+D + A ++ G L +HGRT +Q Y+ E Sbjct: 126 KEVVGTIVKT--SKKPVSAKMRIGFD-KSVVEDRAKLLEDLGIVFLTIHGRTVKQMYKGE 182 Query: 180 HIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY 239 D+ I + IPVIANG+I D++ A+ + +G V IGRGA+ P + +K Sbjct: 183 -ADYDEIKKGVNAVKIPVIANGDITDYEKAKYVLEYTGASGVSIGRGAVGKPWIFLEMKQ 241 Query: 240 NEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNN 299 + +L+ + ++ G Y V ++ K +A+E + + + Sbjct: 242 QGNITSEQKKEVILEHFNQMVYWY--GEYGVILFRKHAHAYSKGIPKASEFRSKMNEVKD 299 Query: 300 SPDIARAIQAIDI 312 + I+ Sbjct: 300 PEVARKLIEEYFN 312 >UniRef50_D2U2K4 tRNA-dihydrouridine synthase B n=1 Tax=Arsenophonus nasoniae RepID=D2U2K4_9ENTR Length = 458 Score = 298 bits (765), Expect = 1e-79, Method: Composition-based stats. Identities = 82/318 (25%), Positives = 147/318 (46%), Gaps = 17/318 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 ++ APM G+ D R L + + ++E + Q+ L+ G Sbjct: 41 LVAAPMAGITDRPFRSLCYSMG-AGMTVSEMLSSNPQVWKTDK-----SRLRMIHSDELG 94 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 + VQ+ G P +A A V G+ +D+N GCP+K VN G+ LL+ PELI + Sbjct: 95 -IRSVQIAGSDPDEMATAARINVANGAQIIDINMGCPAKKVNRKLAGSALLRYPELIEKI 153 Query: 123 AKAMREAVPAHLPVSVKVRLGW-DSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 A+ AV +PV++KVR GW +IA ++ G + +HGRT+ + Sbjct: 154 LLAVVNAV--DVPVTLKVRTGWSPEERNCIKIAQLAERCGIQAVTIHGRTRACLFNG-AA 210 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN- 240 ++ +I +Q + IP+IANG+I D A+ + +G DA+MIGR A P + R +++ Sbjct: 211 EYDSIRAAKQNVTIPIIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYL 270 Query: 241 -----EPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVR 295 P MP EV L+Q + + + ++ +S+ +E+ + + Sbjct: 271 ETGELLPPMPIAEVQCLMQAHVKELHDFYGQGKGIRIARKHVSWYLREHAPDDQFRRTFN 330 Query: 296 VLNNSPDIARAIQAIDIE 313 + ++ + ++A + Sbjct: 331 TIEDASEQLEVLEAYFEK 348 >UniRef50_D1NSS9 Putative tRNA-dihydrouridine synthase n=1 Tax=Bifidobacterium gallicum DSM 20093 RepID=D1NSS9_9BIFI Length = 422 Score = 298 bits (765), Expect = 1e-79, Method: Composition-based stats. Identities = 76/320 (23%), Positives = 131/320 (40%), Gaps = 18/320 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 V+L+PM GV + R L + L + E + + R L+ PS Sbjct: 57 VILSPMAGVTNWPFRVLCEQYGPDGLYVAEMITARALV------ARNPKALRLCRFAPSE 110 Query: 63 TLVRVQLLGQFPQWLAENAARAV-ELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + +QL G P + + A V E + VDLN GCP V GGG+ L +L Sbjct: 111 RIRSLQLYGVNPSIMEQAAKIVVDEQMADHVDLNFGCPVPKVTRRGGGSALPWKTDLFTD 170 Query: 122 GAKAMREAVPA-HLPVSVKVRLGWDSGEKK-FEIADAVQQAGATELVVHGRTKEQGYRAE 179 + A +PV+ K+R+G D + E Q+ G + +H RT + Y Sbjct: 171 VVSRVVRVCDAAGIPVTAKIRVGIDHEHETFHEAGHIAQEEGCKAVTLHARTTAE-YYGG 229 Query: 180 HIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY 239 H DW IG++ ++L++PV NG+IW A + +GC V IGRG P L +K+ Sbjct: 230 HSDWSRIGELVEQLDVPVFGNGDIWGAADALAMVEQTGCAGVAIGRGCQGRPWLFADIKH 289 Query: 240 ------NEPRMPWPEVVALLQKYTRLEKQGD--TGLYHVARIKQWLSYLRKEYDEATELF 291 +V ++ ++ + +++ +++ K + + Sbjct: 290 AFAGSDERTDPTLGQVCQVIMRHATYLTEFYDGDERMAAHDMRKHVAWYLKGFPVGGGVR 349 Query: 292 QHVRVLNNSPDIARAIQAID 311 + + D+ R + +D Sbjct: 350 RAFMACESLADMQRIVDGLD 369 >UniRef50_Q1Q3Q8 Strongly similar to tRNA-dihydrouridine synthase n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q3Q8_9BACT Length = 341 Score = 298 bits (765), Expect = 1e-79, Method: Composition-based stats. Identities = 82/308 (26%), Positives = 137/308 (44%), Gaps = 13/308 (4%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 ++LAPM G D R + + TE V V + K + Sbjct: 35 LILAPMAGFSDMPYRLICRRFG-MSMSYTEVVSVSGIVWNNKKTFK------LLDFKEEE 87 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 V Q++G + E + +LG +D+N GC + G G GA +LK P I + Sbjct: 88 RPVTFQVVGNDECQITEACKKIEQLGPDIIDINMGCSVSDIAGKGAGAGMLKHPSKISKM 147 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSG-EKKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 + ++ +PV+ K+RLGWD E+A +++ GA+ + VHGRT+ Q Y + Sbjct: 148 FNNLTGSLS--VPVTGKIRLGWDHKTRNYIEVARILEENGASLIAVHGRTRSQ-YFSGAA 204 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNE 241 DW AI +++Q + IPVIANG++ + + CD VMIGR A+ P + R + Sbjct: 205 DWDAIAEVKQSVKIPVIANGDVRSVADIAEIKKRTACDGVMIGRAAIGHPWIFR--YKDR 262 Query: 242 PRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNNSP 301 + E + +++ + K+ V ++ +ATEL ++ ++ Sbjct: 263 ENISGSEKIEMIRYHLDCMKEYYGHAIGVVLFRKHAVKYIVGLPKATELRPYIVRSKSAE 322 Query: 302 DIARAIQA 309 DI I A Sbjct: 323 DIISYIAA 330 >UniRef50_A6DCX2 tRNA-dihydrouridine synthase B n=1 Tax=Caminibacter mediatlanticus TB-2 RepID=A6DCX2_9PROT Length = 311 Score = 298 bits (764), Expect = 1e-79, Method: Composition-based stats. Identities = 72/312 (23%), Positives = 133/312 (42%), Gaps = 16/312 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 LAP+ G D R ++ E D+ +E + + ++ ++ Sbjct: 13 FFLAPLAGYTDLPFRSVVKEFG-CDMTFSEMINANAIAFNNEKTKKMM------QKSSKE 65 Query: 63 TLVRVQLLGQFPQWLAENAARAVE-LGSWGVDLNCGCPSKTVNGSGGGATLLKDP--ELI 119 T +Q+ + + E G+D+N GCP SG G LLKD E + Sbjct: 66 TPYFIQIAANNVENAIKAVEIINEIPWIDGIDINLGCPVNKARRSGYGGVLLKDENKEKL 125 Query: 120 YQGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAE 179 + A+ + + VS K+RLG++ + A ++ G L VHGRT +Q Y+ Sbjct: 126 KEIVSAIIKT--SKKIVSAKMRLGYNEV-VAVDRAKMLEDLGIKFLTVHGRTVKQMYKG- 181 Query: 180 HIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY 239 + +++ I + + +NIPVIANG+I D++ A++ + + + V IGRG + P + +K Sbjct: 182 NANYKEIKKVVKEVNIPVIANGDITDYKKAKEVLEYTEANGVAIGRGVIGKPWIFLEMKQ 241 Query: 240 NEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNN 299 P+ + +L + + + Y V ++ L K A+E + N Sbjct: 242 QGEITPYQKKEVILTHFKAMIEWYGD--YGVILFRKHLHQYSKGIKNASEFRSKINSTEN 299 Query: 300 SPDIARAIQAID 311 ++ I+ Sbjct: 300 KDEVINLIEEYF 311 >UniRef50_Q2RM54 Dihydrouridine synthase TIM-barrel protein nifR3 n=6 Tax=Clostridia RepID=Q2RM54_MOOTA Length = 334 Score = 298 bits (763), Expect = 2e-79, Method: Composition-based stats. Identities = 89/318 (27%), Positives = 145/318 (45%), Gaps = 16/318 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 +++APM G D + R L E L TE + + K H Sbjct: 16 LIMAPMAGYTDRVFRLLAREAGAA-LTYTEMISAQGLIYNNKNTH------ALLDLKGEP 68 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 V VQL G+ P+ +A AV G+ +DLN GCP+ + +G G+ L++D Sbjct: 69 GPVAVQLFGREPEIMAAATRIAVAAGAAIIDLNMGCPTPKIVKNGEGSALMRDLPRAAAI 128 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 AM A +PV+VK+RLGWD E A AV AGA + +HGRT+ Q Y Sbjct: 129 VAAMVRAAG-PVPVTVKMRLGWDEDSINVVEAARAVVYAGAAAVAIHGRTRSQFYSGR-A 186 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY-- 239 DW +++ +++PVI NG++ + A +A +GCD VM+GRGA+ P L ++ Sbjct: 187 DWSYFRRVKEAVDVPVIGNGDVRTARDAVTMLAETGCDGVMVGRGAVGNPWLLTAIRAVL 246 Query: 240 ----NEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVR 295 P + + + ++ +L + V +++ L+ + A L Q + Sbjct: 247 EGRPEPPPVDVRTRMTMACRHLKLLVELKGETTAVKEMRKHLACYFRGLPGAARLRQQIN 306 Query: 296 VLNNSPDIARAIQAIDIE 313 L + ++ AI+A + Sbjct: 307 TLTTAAEVIAAIKAYLRD 324 >UniRef50_Q88LF2 tRNA-dihydrouridine synthase C n=38 Tax=cellular organisms RepID=DUSC_PSEPK Length = 323 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 131/312 (41%), Positives = 200/312 (64%), Gaps = 6/312 (1%) Query: 1 MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTP 60 M++ LAPMEG++D+++R++LT V D C+TEF+RV D+LLP F ++ PEL+ +RT Sbjct: 1 MQIALAPMEGLVDNILRDVLTRVGGIDWCVTEFIRVCDRLLPASSFDKLAPELRQGARTA 60 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 +G +RVQLLG P LAENAA A ELG+ +DLN GCP+KTVN S GGA LLK+PEL++ Sbjct: 61 AGVPMRVQLLGSDPVCLAENAALACELGAPVIDLNFGCPAKTVNKSRGGAVLLKEPELLH 120 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 + +R AVPA++PV+ K+RLG+DS + E A A+ + G+ LVVH RTK +GY+ Sbjct: 121 AIVREVRRAVPANIPVTSKMRLGFDSPDGALECATALAEGGSAHLVVHARTKVEGYK-PP 179 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 W+ + ++ + +PV ANGEIW ++C +SG + +M+GRG ++ P+L + Sbjct: 180 AHWEWVARVQDVVKVPVFANGEIWTVDDWRRCREVSGAEDIMLGRGLVSRPDLGLQIAAA 239 Query: 241 E-----PRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVR 295 M W +++ LL+++ R + + Y R+KQWL+ L + Y EA LF +R Sbjct: 240 RDGRDYQPMSWHDLLPLLREFWRQAQAKLSPRYAPGRMKQWLAMLTRSYPEAVVLFAELR 299 Query: 296 VLNNSPDIARAI 307 ++ I+R + Sbjct: 300 REDDCARISRLL 311 >UniRef50_Q88DK5 tRNA-dihydrouridine synthase B n=460 Tax=Proteobacteria RepID=DUSB_PSEPK Length = 337 Score = 297 bits (762), Expect = 3e-79, Method: Composition-based stats. Identities = 84/320 (26%), Positives = 141/320 (44%), Gaps = 19/320 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 ++LAPM GV D R L + + ++E V L + Sbjct: 15 LILAPMAGVTDQPFRTLCQRLG-AGMVVSEMVSSDMSLWNSRKS-------SLRRIHEGD 66 Query: 63 -TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 VQ+ G Q +A A VE G+ +D+N GCP+K V G+ LL+D L+ + Sbjct: 67 PEPRSVQIAGGDAQMMAAAAKANVEAGAQIIDINMGCPAKKVCNKAAGSALLRDEALVSE 126 Query: 122 GAKAMREAVPAHLPVSVKVRLGWD-SGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 A+ AV +PV++K+R GWD + + +A +QAG L VHGRT+ Y E Sbjct: 127 ILHAVVSAV--DVPVTLKIRTGWDRANKNGLNVAKIAEQAGIQALAVHGRTRADLYTGE- 183 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY- 239 ++ IG I+Q ++IPV ANG+I + A+ + +G D ++IGR A P + R +++ Sbjct: 184 AEYDTIGAIKQAVSIPVFANGDITSPEKARAVLETTGVDGLLIGRAAQGRPWIFREIEHY 243 Query: 240 -----NEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHV 294 + P EV +L ++ + V ++ + + E Sbjct: 244 LRTGEHLPAPQLDEVERILLEHLAALHAFYGDVMGVRIARKHVGWYLATRPGGKEFRARF 303 Query: 295 RVLNNSPDIARAIQAIDIEK 314 L ++ ++A E+ Sbjct: 304 NALEDTQAQCANVRAFFSER 323 >UniRef50_B1C9Q3 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C9Q3_9FIRM Length = 329 Score = 297 bits (762), Expect = 3e-79, Method: Composition-based stats. Identities = 77/316 (24%), Positives = 142/316 (44%), Gaps = 14/316 (4%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 + +LAPM GV R + E+ + I+E V K + + + Sbjct: 17 KAILAPMAGVTTLPYRLFMREMG-CKIFISEMVSAKGLYYKSKNTFPLMETNELEHK--- 72 Query: 62 GTLVRVQLLGQFPQWLAENAAR-AVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 ++ +Q+ G P+ + E R + +D+N GCP K + +G G+ LLKD + Sbjct: 73 DSVTGIQIFGSEPEIMGEITERYINDTAFDFIDINMGCPMKKIVNNGDGSALLKDLDKAN 132 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 + + ++ A PVSVKVRLG++ +I A++ GA + VHGRT+EQ + E Sbjct: 133 KVVREVKSASSK--PVSVKVRLGFNEN-IIEDIIKAIEDGGADMITVHGRTREQVFTGE- 188 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY- 239 +D+ I ++ ++P+IANG++ ++ A++ M +G D VMIGRGA P + Sbjct: 189 VDYDGIKKAKETASVPLIANGDLDNYLKAKEKMDYTGADGVMIGRGANYDPFIFSQFNEC 248 Query: 240 ----NEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVR 295 + + +K+ + + V +++L + K + ++ + Sbjct: 249 ISGKKVSEYSLRDKIDAARKHFEIHLKYSKDKKKVIEFRKYLYWYIKGIKNSAKIRNSIN 308 Query: 296 VLNNSPDIARAIQAID 311 +N + ID Sbjct: 309 NVNEIDQVYEIFNRID 324 >UniRef50_A3JG66 Putative uncharacterized protein n=3 Tax=Gammaproteobacteria RepID=A3JG66_9ALTE Length = 335 Score = 297 bits (761), Expect = 3e-79, Method: Composition-based stats. Identities = 127/314 (40%), Positives = 190/314 (60%), Gaps = 6/314 (1%) Query: 1 MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTP 60 MR++LAPMEG++D+ +RE LT+V D C+TEF+RV +LP ++F++ PEL N S T Sbjct: 1 MRIILAPMEGLVDAPIRETLTKVGGIDRCVTEFIRVTHGMLPPRIFYKYAPELHNNSLTR 60 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 G V VQLLG P +A + A+A ELG+ VD+N GCP+KTVN GG L+++PEL++ Sbjct: 61 VGVPVAVQLLGSDPHMMARHGAKAAELGATQVDINFGCPAKTVNKHKGGCVLMREPELMH 120 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 + A+R+AVPA + V+ K+RLG+D A A+ AGA E+V+H R+K GY+ Sbjct: 121 EITAAVRQAVPADILVTAKMRLGYDDRSMGVACAQALDAAGAGEIVIHARSKTDGYK-PP 179 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 W+ I R+ + VIANG+I+ +C +SGCD VMIGRG + P+L+R ++ + Sbjct: 180 AYWEEIAKAREAVKAKVIANGDIFTVADYWRCREVSGCDDVMIGRGLVARPDLARQIRAS 239 Query: 241 EPRMP-----WPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVR 295 + WPE +AL+Q+Y + Y RIKQW++YLR+ + EA L+ R Sbjct: 240 QRGESIELMTWPEALALVQEYGYALQGWLEDKYVTGRIKQWMNYLRQGFSEAEALWPQAR 299 Query: 296 VLNNSPDIARAIQA 309 + + + Sbjct: 300 KIREVAPMFEFLNQ 313 >UniRef50_D0LJX3 TIM-barrel protein, nifR3 family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LJX3_HALO1 Length = 348 Score = 297 bits (760), Expect = 4e-79, Method: Composition-based stats. Identities = 94/318 (29%), Positives = 149/318 (46%), Gaps = 17/318 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 VLLAPM V D R + L ITEF++ + + G Sbjct: 18 VLLAPMAAVTDLPFRTICERFG-VGLTITEFLKATALCDGDAEVVDK------LTASLDG 70 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 VQ+ G+ + L + A A+++G+ +D+N GCP+K V GA L++ PEL + Sbjct: 71 VRFGVQIYGREVEPLVQAAQLALDIGASLIDINMGCPAKRVVAGECGAALMQWPELSAEL 130 Query: 123 AKAMREAVPAHLPVSVKVRLGWDS-GEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 +A+ +VP +PV+VK R GW+ E A A+ +AGA + VHGRT+ QG+ + Sbjct: 131 VRAVVASVPDSVPVTVKHRAGWNPLNRNAPEFACAMVEAGAQMVTVHGRTRTQGFAG-SV 189 Query: 182 DWQAIGDIRQRLN--IPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY 239 D + I +R+ + +PV+ NG++ + +GCDAVMIGRGAL P L R + Sbjct: 190 DLEVIRRVREAVPARVPVVGNGDVVCVDDYLRMREHTGCDAVMIGRGALGNPWLFRSLHA 249 Query: 240 NEPRMPWPEVVALLQKY------TRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQH 293 +P P + ++Y L G + +++ ++ K D A QH Sbjct: 250 LAHGLPDPGRPDMAERYRVFCEHVALLYALKGGPKLIHEVRKACAWYAKGLDGADGFRQH 309 Query: 294 VRVLNNSPDIARAIQAID 311 V L + ++ A A Sbjct: 310 VWKLRSPDEVLVAAAAFF 327 >UniRef50_Q1N033 Putative uncharacterized protein n=1 Tax=Bermanella marisrubri RepID=Q1N033_9GAMM Length = 321 Score = 296 bits (759), Expect = 6e-79, Method: Composition-based stats. Identities = 127/307 (41%), Positives = 189/307 (61%), Gaps = 1/307 (0%) Query: 1 MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTP 60 M++ LAPMEG++D +R LLT +D C+TEF+RV QLLP + F RICPE + +TP Sbjct: 1 MQLSLAPMEGLVDVHMRTLLTRGGYFDYCVTEFLRVTTQLLPERSFRRICPESDHQWKTP 60 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 +GT V +QLLG P +AENA RA ELG+ V++N GCPS+ VNG GGA LL+ P+ I+ Sbjct: 61 AGTPVHLQLLGSDPVAMAENACRAAELGAPVVNINFGCPSRFVNGRCGGAYLLQFPDQIH 120 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 +++R+A+P H+P++ K+RLG+ A A++ AG ++ +H RTK QGYR Sbjct: 121 TILESVRKALPEHVPLTAKMRLGFKDDALALANAQAMESAGVRDICIHARTKVQGYR-PP 179 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 W I +I+Q++ +P+IANGEIW+ + + C A S C+ VM+GRGA+ P L+ +K Sbjct: 180 AHWHQIKNIKQQVKVPIIANGEIWNRRDYEACKAASHCEHVMLGRGAVADPELAATIKGC 239 Query: 241 EPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNNS 300 E W + L + Y RIKQW S+L+ Y++A LF+ ++ + + Sbjct: 240 ESSDTWIHRLHDLIWMLDELVEFGGQSYAHGRIKQWFSFLKMSYEQAVPLFESLKTMKEA 299 Query: 301 PDIARAI 307 I R + Sbjct: 300 SAIRRFL 306 >UniRef50_Q0BSS6 tRNA-dihydrouridine synthase n=15 Tax=Alphaproteobacteria RepID=Q0BSS6_GRABC Length = 370 Score = 296 bits (759), Expect = 6e-79, Method: Composition-based stats. Identities = 85/319 (26%), Positives = 139/319 (43%), Gaps = 15/319 (4%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 V+LAPM GV D R L E+ + ++E + + K R+ S Sbjct: 43 VILAPMSGVTDLPFRMLAREMGT-GMVVSEMIASWAMVRENKTTLRMAEPAGPPSPGSPN 101 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTV-NGSGGGATLLKDPELIYQ 121 +QL G P+ +AE A A++ G+ +D+N GCP K V G G+ L++D + Sbjct: 102 ---ALQLAGCDPEAMAEAARIAIDKGAELIDINFGCPVKKVAVGQSAGSALMRDEVTAAK 158 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 +A +AV +PV++K+R+GWD +A + +G + VHGRT++Q Y + Sbjct: 159 ILEATVKAVS--VPVTLKMRMGWDHQSLNAPALAKIAEASGIRMITVHGRTRQQFYEGK- 215 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 DW + ++Q ++PVI NG+I + A + AISG D VM+GRG P R V Sbjct: 216 ADWAFVARVKQATSLPVIVNGDIQTVEQAAEARAISGADGVMVGRGCYGRPWFPRQVAAY 275 Query: 241 E------PRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHV 294 P P E +L + + + ++ +S+ + V Sbjct: 276 LRDGVHIPEPPLSERKQILLNHYDAMLRCFGTDAGMRLARKHVSWYTTGLHGSAAFRATV 335 Query: 295 RVLNNSPDIARAIQAIDIE 313 L + + I Sbjct: 336 NRLADPSQVLALIDTFFDP 354 >UniRef50_C0W327 Dihydrouridine synthase n=2 Tax=Actinomyces RepID=C0W327_9ACTO Length = 438 Score = 296 bits (758), Expect = 9e-79, Method: Composition-based stats. Identities = 84/348 (24%), Positives = 137/348 (39%), Gaps = 49/348 (14%) Query: 5 LAPMEGVLDSLVRELLTEVN-------------------------DYDLCITEFVRVVDQ 39 LAPM GV ++ R L E L +TE V Sbjct: 40 LAPMAGVTNASFRRLCREQGESALPAHARPAAAGPLPTDDGGLLAPAGLYVTEMVTTRAL 99 Query: 40 LLPVKVFHRICPELQNASRTPSGTLVRVQLLGQFPQWLAENAARAVELG-SWGVDLNCGC 98 + R L P+ + +QL G P + A VE + +DLN GC Sbjct: 100 V------ERNDKTLAMVRTDPTERVRSIQLYGVDPVIAGKAARILVEEDLADHIDLNFGC 153 Query: 99 PSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHL---------PVSVKVRLGWDSGEK 149 P V GGGA L +L++ + + + PV+VK+R+G D + Sbjct: 154 PVPKVTRKGGGAALPWKKDLLHAILREVVRGAEEGVRLGRREREVPVTVKMRIGVDEEHE 213 Query: 150 K-FEIADAVQQAGATELVVHGRTKEQGYRAEHIDWQAIGDIRQRLNIPVIANGEIWDWQS 208 + A A Q AG L +HGRT Q Y + DW AI +++ IPV+ NG+ W Sbjct: 214 TYLDAARAAQDAGVAALALHGRTARQHYAGK-ADWSAIARLKEACRIPVLGNGDTWTGSH 272 Query: 209 AQQCMAISGCDAVMIGRGALNIPNLSRVVKY------NEPRMPWPEVVALLQKYTRLEKQ 262 A + M +GCD V++GRG P L + + V+A ++ + RL Sbjct: 273 ALEMMRQTGCDGVVVGRGCQGRPWLFADIVHALSGSVERTHPDLDAVIATIRAHARLLAA 332 Query: 263 GDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNNSPDIARAIQAI 310 V +++ + + K Y + + +++ ++ ++A+ Sbjct: 333 ELGEDRGVRDLRKHIGWYLKGYPVGGQARGDLMKVSSLAELDAGLEAM 380 >UniRef50_Q9RDC6 Putative uncharacterized protein SCO2497 n=4 Tax=Bacteria RepID=Q9RDC6_STRCO Length = 406 Score = 295 bits (757), Expect = 1e-78, Method: Composition-based stats. Identities = 78/342 (22%), Positives = 139/342 (40%), Gaps = 38/342 (11%) Query: 3 VLLAPMEGVLDSLVRELLTEV-NDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 V+LAPM G+ ++ R L E L ++E + + R +Q + Sbjct: 27 VVLAPMAGITNAPFRTLCREFSGGKGLFVSEMITTRALV------ERNEKTMQLIHFDAT 80 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELG-SWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 T +QL G P + + E G + +DLN GCP V GGG+ L L+ Sbjct: 81 ETPRSIQLYGVDPVTVGKAVRMIAEEGLADHIDLNFGCPVPKVTRKGGGSALPYKRHLLR 140 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKK-FEIADAVQQAGATELVVHGRTKEQGYRAE 179 + LPV++K+R G D + + G T + +HGRT Q Y Sbjct: 141 AIVREAV-TGAGDLPVTMKMRKGLDDDHLTYLDAGRIAVEEGVTAIALHGRTTAQHY-GG 198 Query: 180 HIDWQAIGDIRQRLN-IPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK 238 DW AI +++ + IPV+ NG+IW + A + + +GCD V++GRG L P L + Sbjct: 199 TADWDAIARLKEHVPEIPVLGNGDIWSAEDALRMVRETGCDGVVVGRGCLGRPWLFADLV 258 Query: 239 YNEP-------RMPWPEVVALLQKYTRLEKQGDTGLYHVAR------------------- 272 R EV ++ ++ L + R Sbjct: 259 AAFEGRTDSFVRPTLREVADVMVRHATLLGEWIENGGTARRATVEGGGGRREGEARGVID 318 Query: 273 IKQWLSYLRKEYDEATELFQHVRVLNNSPDIARAIQAIDIEK 314 ++ +++ K + +E+ + + V ++ + + +D+++ Sbjct: 319 FRKHVAWYLKGFAVGSEMRKRLAVTSSLEALRAGLDELDLDQ 360 >UniRef50_C0QKE4 Dhs2 n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QKE4_DESAH Length = 330 Score = 295 bits (757), Expect = 1e-78, Method: Composition-based stats. Identities = 75/319 (23%), Positives = 132/319 (41%), Gaps = 17/319 (5%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 R +LAP+ G+ + R + L +E V + +Q Sbjct: 11 RTVLAPLAGITNLPFRIIAKGCG-CTLVCSEMVSAKGLEFNSEKT------VQLLRTDAC 63 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELG-SWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 V VQ+ G +A A E + +D+N GC K V +G G L+KD + Sbjct: 64 ERPVSVQIFGAEALSMANAARWIAERNVADIIDINFGCSVKKVARTGAGVALMKDMDNAR 123 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDS-GEKKFEIADAVQQAGATELVVHGRTKEQGYRAE 179 +A+R AV +P ++K+R GWDS + F+IA + G + +H RT QG+R Sbjct: 124 AIIRAVRRAVS--MPFTIKIRSGWDSSASQAFDIARMAEDNGVDAIAIHPRTAAQGFRGR 181 Query: 180 HIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY 239 DW I +++ L IPVI NG+I + + +GCD VM+GR A+ P + ++ Sbjct: 182 -ADWSMIARLKEMLTIPVIGNGDITTPEQGVAMIQETGCDGVMVGRAAMGNPFIFGGIEA 240 Query: 240 NEPRMPW-----PEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHV 294 W E+ ++++ ++ L++ K + A+ + + Sbjct: 241 LLRGEAWNEPSPMEIFQIMEEMVESHVAYLGERPACRMMRSRLAWFVKGFAGASVFRREL 300 Query: 295 RVLNNSPDIARAIQAIDIE 313 + I+ + + Sbjct: 301 TGIETLDQAMALIRRYEAD 319 >UniRef50_B1ZWU6 TIM-barrel protein, nifR3 family n=6 Tax=Verrucomicrobia RepID=B1ZWU6_OPITP Length = 370 Score = 295 bits (757), Expect = 1e-78, Method: Composition-based stats. Identities = 76/316 (24%), Positives = 138/316 (43%), Gaps = 17/316 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 + L+P+ G + R L E+ T+ V L R L+ + + Sbjct: 12 LFLSPLAGYTNLPFRLTLRELGGLGWVTTDLVNARSLL------ERNPAALKLVASSAED 65 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 + +QL G P + + A +LG+ VD+N GCP + V GGG+ ++ + Sbjct: 66 RPMSIQLFGSVPTEMRDAARICEDLGAQAVDINMGCPVRKVVRVGGGSAMMTELNQTAAL 125 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGEKK-FEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 + M EAV +PV+ K+RLGWD ++A ++ AG + VHGRT+ QG+ + Sbjct: 126 VRGMIEAVK--IPVTAKMRLGWDDENLTAPDLARVLEDAGVAAVFVHGRTRAQGFSGT-V 182 Query: 182 DWQAIGDIRQRLN-IPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 + I + Q + IPVI NG++ ++A+ + +GC V IGRGA P + R + Sbjct: 183 NLAGIAAVVQAVKRIPVIGNGDVTTPEAARAMIEQTGCAGVSIGRGAFYDPWIFRRTHHL 242 Query: 241 E------PRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHV 294 P + E V +++++ + ++ + K + A + + Sbjct: 243 LTSGELWPEPGFDERVRVMRRHFERYCEFYGEEKGPRLFRKVAPWYAKRFGPAKPFKRRI 302 Query: 295 RVLNNSPDIARAIQAI 310 +++ D A+ Sbjct: 303 ITIDSRADFDAALAEY 318 >UniRef50_A6NW05 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NW05_9BACE Length = 307 Score = 295 bits (756), Expect = 1e-78, Method: Composition-based stats. Identities = 85/314 (27%), Positives = 132/314 (42%), Gaps = 17/314 (5%) Query: 8 MEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGTLVRV 67 M GV D R + E+ ITE V K + Sbjct: 1 MAGVTDMAFRTICRELG-AGYTITEMVSAKALCYQDKK------SIPLLKLGEGEHPCAA 53 Query: 68 QLLGQFPQWLAENAARAVE-LGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAM 126 Q+ G + + E AA A E G+ +D+N GCP V SG G+ L++D + + A+A+ Sbjct: 54 QIFGSDEKCMEEAAAIAGEVSGADIIDINMGCPVPKVANSGDGSGLMRDVDKAVRVAEAV 113 Query: 127 REAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRAEHIDWQA 185 PV+VK RLGWD G E A A++ AG + + VHGRT+ Q Y +W Sbjct: 114 VRGAGER-PVTVKFRLGWDKGSINCVEFAKAMEAAGVSAVAVHGRTRTQMYAGT-ANWDY 171 Query: 186 IGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN----- 240 I +++Q ++IPVIANG+++D +A + +G D MIGRG P + + + Sbjct: 172 IREVKQAVSIPVIANGDVFDGPAAAHILRYTGADMAMIGRGCFGNPWVFQQARAALEGEE 231 Query: 241 -EPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNN 299 P P E V + L ++ ++ K A + + ++ Sbjct: 232 IPPLPPLAERVDTAVRQFELAAAHKGEHIACLEARKQYAWYLKGVAFAGYYKEQISHIST 291 Query: 300 SPDIARAIQAIDIE 313 DI R I + Sbjct: 292 LEDIYRITAGIKRD 305 >UniRef50_Q5M689 Possible transcriptional regulator n=25 Tax=Streptococcus RepID=Q5M689_STRT2 Length = 350 Score = 295 bits (755), Expect = 2e-78, Method: Composition-based stats. Identities = 78/317 (24%), Positives = 136/317 (42%), Gaps = 18/317 (5%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 R +LAPM GV +S R + E + L + E + L + L + Sbjct: 43 RTVLAPMAGVTNSAFRTIAKEFS-AGLVVMEMISEKGLLYNNEKT------LHMLHIDEN 95 Query: 62 GTLVRVQLLGQFPQWLAENAARAV-ELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 + +QL G + L A + VD+N GCP V + GA LKDP+ IY Sbjct: 96 EHPMSIQLFGGDAEGLKRAADFIQTNTKADIVDINMGCPVNKVVKNEAGAKWLKDPDKIY 155 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 K + + +P++VK+R GW + E A A + AG + L +HGRT+EQ Y H Sbjct: 156 HIVKEVTSVL--DIPLTVKMRTGWSDSDLAVENALAAESAGVSALAMHGRTREQMYTG-H 212 Query: 181 IDWQAIGDIRQRL-NIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY 239 D + + + + + IP I NG++ + Q A+ + G DAVM+GR A+N P + + + Sbjct: 213 CDHETLARVAKAITKIPFIGNGDVRNVQDAKLMIEELGVDAVMVGRAAMNNPYIFTQINH 272 Query: 240 ------NEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQH 293 P +P+ + + + + + + + V + + + A ++ Sbjct: 273 FFETGEELPDLPFDKKLDIAEDHLKRLVDLKGEMIAVREFRGLAPHYLRGTAGAAKVRGE 332 Query: 294 VRVLNNSPDIARAIQAI 310 V + + + Sbjct: 333 VSRAESVAQVKEIFATL 349 >UniRef50_D0L1E3 TIM-barrel protein, nifR3 family n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0L1E3_HALNC Length = 333 Score = 295 bits (755), Expect = 2e-78, Method: Composition-based stats. Identities = 86/314 (27%), Positives = 134/314 (42%), Gaps = 17/314 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 + LAPM GV D R+L E L +TE + +L L+ Sbjct: 26 LALAPMAGVSDRPFRQLCREYG-AGLVVTEMMSAKPELQSSAK-----SRLRQIDSNDIE 79 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 VQLLG P LAE A AV G+ +DLN GCP+K V G+ L+ +P+ + + Sbjct: 80 -PRAVQLLGNDPFELAEAARFAVSQGAQLIDLNLGCPAKKVCKRAAGSALMAEPDTVARL 138 Query: 123 AKAMREAVPAHLPVSVKVRLGWD-SGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 +A+ AV PVS+K+R G D IA + AG + L +HGRT+ Y E Sbjct: 139 LEALVAAV--DCPVSLKMRTGPDREWRNAVAIAKIAENAGISMLSIHGRTRADRYEGE-A 195 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNE 241 ++ I ++ +++PV ANG+I Q A+Q +A +G +M+GRGA P + +K Sbjct: 196 EYDTIAEVVAAVDLPVFANGDITTPQKARQVIAHTGAAGIMVGRGAFGQPWIFSALKAEL 255 Query: 242 PRMPWP------EVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVR 295 P P E V ++K + ++ L + + E Sbjct: 256 TGQPLPSPPDRAERVVAIKKQFEKIYHHYGDSLGIRIARKHLGWYAASLELGEEDRAVFN 315 Query: 296 VLNNSPDIARAIQA 309 + + + Sbjct: 316 RFEHPEQQRQWLAQ 329 >UniRef50_B9JF02 tRNA-dihydrouridine synthase protein n=12 Tax=Alphaproteobacteria RepID=B9JF02_AGRRK Length = 342 Score = 295 bits (755), Expect = 2e-78, Method: Composition-based stats. Identities = 85/306 (27%), Positives = 137/306 (44%), Gaps = 19/306 (6%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 RV+LAPM GV D R+L L +TE V + + Sbjct: 28 RVILAPMSGVTDLPFRQLALRYG-AGLVVTEMVASRELVQDTAESWARLKSAGL------ 80 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 VQL G+ W+AE A A + G+ +D+N GCP+K V G G+ L++DP+ Sbjct: 81 -KPHMVQLAGREAYWMAEAAKIAADNGADIIDINMGCPAKKVIGGYSGSALMRDPDHALG 139 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 +A +AV +PV++K+RLGWD IA ++AG + +HGRT+ Q Y Sbjct: 140 LIEATVKAV--DVPVTLKMRLGWDENSINAPHIARRAEEAGIQLVTIHGRTRMQFYEGR- 196 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 DW AI +R ++IP++ANG++ + A + + SG DAVM+GRG P V Sbjct: 197 ADWDAIRAVRDVISIPLVANGDVDTPEDASEILRRSGADAVMVGRGCQGRPWH-AGVLAG 255 Query: 241 EPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLR-KEYD---EATELFQHVRV 296 E+ + ++ R+ + ++ L + + A + + Sbjct: 256 HREPDRGEIADIALEHYRMMLDFYGEAVGIRHARKHLGWYLDRYAPTINGAEKAR--IMT 313 Query: 297 LNNSPD 302 +S + Sbjct: 314 SKDSQE 319 >UniRef50_B6W908 Putative uncharacterized protein n=1 Tax=Anaerococcus hydrogenalis DSM 7454 RepID=B6W908_9FIRM Length = 321 Score = 294 bits (754), Expect = 3e-78, Method: Composition-based stats. Identities = 73/315 (23%), Positives = 139/315 (44%), Gaps = 18/315 (5%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 +++LAP+ GV D R + D TE V V K + + + Sbjct: 9 QIMLAPLAGVSDVGFRLISERYG-ADKTFTEMVSVNALYYDNKKTND------LLFISEN 61 Query: 62 GTLVRVQLLGQFPQWLAENAARAVEL--GSWGVDLNCGCPSKTVNGSGGGATLLKDPELI 119 +QL G P+ + + + S + N GCP + +G G+ L+ +P+L+ Sbjct: 62 EKNCNIQLFGSKPEVIEKVIKDKINYIEKSKEISFNMGCPVAKITKNGEGSQLMANPKLV 121 Query: 120 YQGAKAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRA 178 + K +R+ +++K RLG D +I Q G +++H RTK+Q Y Sbjct: 122 EEICKTLRK--STDKKLNIKFRLGIDDKHINYLDIGKIAQDTGIDYVILHARTKDQMYSG 179 Query: 179 EHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK 238 + +W I +++ L IPVIANG+I+ + + ++ D VM+ RGA+ P L + +K Sbjct: 180 -NANWDHIRKLKENLQIPVIANGDIFSVEDFINVIDLTKADGVMLARGAMGNPFLFKEIK 238 Query: 239 -----YNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQH 293 + E++ L +LE + V ++++ LS+ K + ++++ Sbjct: 239 DYIKTGKYSKPSPIEIIDQLIDQYKLELKYKEEKLVVTQMRKHLSWYIKGLENSSKIRDL 298 Query: 294 VRVLNNSPDIARAIQ 308 V L ++ ++ Sbjct: 299 VNKLKTIDEVMDELE 313 >UniRef50_A9A4W7 Putative TIM-barrel protein, nifR3 family n=1 Tax=Nitrosopumilus maritimus SCM1 RepID=A9A4W7_NITMS Length = 320 Score = 294 bits (753), Expect = 3e-78, Method: Composition-based stats. Identities = 79/313 (25%), Positives = 129/313 (41%), Gaps = 10/313 (3%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPEL-QNASRTP 60 R LAPM GV D +R ++ L +TEF + + + + + + Sbjct: 8 RAFLAPMAGVSDPALRLQCKKMG-AGLVVTEFTSIHSIIAKEEQLKENMKTIQEFIEFSE 66 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 + VQL G L + A VE +D N GCP+ + G LL++ L Sbjct: 67 QERPISVQLFGSDLYALEKAATI-VEPYFDIIDYNMGCPAPHITQQMAGGALLQEVNLTQ 125 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKF--EIADAVQQAGATELVVHGRTKEQGYRA 178 Q + + AV PV++K+R G K +IA+ + G + H RT QGY Sbjct: 126 QIFETLVNAVKK--PVTLKIRSGVTDASKFLFRDIAEIAEDQGIQMITFHPRTVSQGYSG 183 Query: 179 EHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK 238 DW+ I ++++ NIPV+ NG+I + A+ + +GCD VMIGRGA+ P L + Sbjct: 184 -SADWKLIKELKEISNIPVVGNGDITTPEDAKMMLDETGCDYVMIGRGAMGNPFLFEQIN 242 Query: 239 YNEPRMPWPEV--VALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRV 296 + E L + + + IK K ++L + Sbjct: 243 DYLKTGSYKEYSFKDRLDSFFDYLHLTNQYKIKFSNIKSQAMRFTKGLKGGSKLRSKITF 302 Query: 297 LNNSPDIARAIQA 309 N D+ + ++ Sbjct: 303 SKNLEDLEKIMRE 315 >UniRef50_B2ULM0 TIM-barrel protein, nifR3 family n=3 Tax=Verrucomicrobia RepID=B2ULM0_AKKM8 Length = 334 Score = 294 bits (753), Expect = 3e-78, Method: Composition-based stats. Identities = 81/323 (25%), Positives = 144/323 (44%), Gaps = 19/323 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 + LAPM GV D + R + E+ D+ +TEFV L + R + Sbjct: 19 LFLAPMAGVTDPIFRTICKELG-VDVMVTEFVSAEGILQAWERNRR------YTKIENAH 71 Query: 63 TLVRVQLLGQFPQWLAENAARAVEL-GSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + +QL G + E A ++ +D+N GCP V G GG++LLKD L+ Sbjct: 72 RPIGIQLFGADGNHMGEAARIILDHEKPDFIDINFGCPVPKVVGKNGGSSLLKDLPLLAS 131 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEK-KFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 A + +AV +PV+ K+R+GWD + ++ G + + +HGRT+ Q Y Sbjct: 132 VAGGVVKAVGERIPVTAKIRIGWDFQSLCAMDACRLLENEGISMITIHGRTRSQQYSGT- 190 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 +W I + + +++PVI NG+I Q+ + VMIGR A+ P + KY Sbjct: 191 ANWDIIDECARAMSVPVIGNGDISTPQAVAYVKENTAVSGVMIGRAAMENPWIFGDAKYY 250 Query: 241 ------EPRMPWPEVVALLQKYTRLE---KQGDTGLYHVARIKQWLSYLRKEYDEATELF 291 P E AL+ ++ R+ + L+ + ++ + K + A E+ Sbjct: 251 LLHGTMPPARDPQEKAALILRHARMALESRHYGDELHTMRHMRSRILAYTKGFPGAKEMR 310 Query: 292 QHVRVLNNSPDIARAIQAIDIEK 314 + +++ P++ + + +K Sbjct: 311 SRLVRVSSMPELEDLLSKLPRQK 333 >UniRef50_Q8PX79 NifR3-like protein n=3 Tax=Methanosarcina RepID=Q8PX79_METMA Length = 323 Score = 294 bits (753), Expect = 3e-78, Method: Composition-based stats. Identities = 88/319 (27%), Positives = 147/319 (46%), Gaps = 22/319 (6%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 +LLAPM V + R L DL TE + V L + + Sbjct: 17 LLLAPMADVTNLAFRLLCRRYG-ADLTYTEMINVDALLNESRK------SFIKGLSSEED 69 Query: 63 TLVRVQLLGQFPQWLAENAARAVELG-SWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 VQL+G P L A E +D+N GCP++ + G+G G+ LL PEL+Y Sbjct: 70 RPFGVQLVGGCPDKLKRAALFIEEEYRPEIIDVNMGCPARCITGAGCGSALLNSPELVYS 129 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 + E++ PVS K+RL EK EIA +++AGA+ + VHGRT Q Y Sbjct: 130 IILELTESL--DTPVSAKIRL-LGREEKTLEIARLIEKAGASAVTVHGRTAAQMYSGNS- 185 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNE 241 + + I ++ L+IPVIANG++ D +SA++ + ++GCD +MIGR A+ P + + +++ Sbjct: 186 NLEGIRAVKNELSIPVIANGDVKDEESAERTLELTGCDGLMIGRAAMGNPFIFKKIRHYL 245 Query: 242 P-------RMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHV 294 P+ ++ Y L ++ + L ++ + K + + + + Sbjct: 246 ETGEKLGADKPFRQLEDF-NSYISLLEEHN--LLSSINLRMHAHWFTKGLRGSRHVREKI 302 Query: 295 RVLNNSPDIARAIQAIDIE 313 L + I I++ E Sbjct: 303 NGLEDGKAITELIRSFCQE 321 >UniRef50_C5WE57 tRNA-dihydrouridine synthase n=42 Tax=Streptococcus RepID=C5WE57_STRDG Length = 354 Score = 294 bits (753), Expect = 3e-78, Method: Composition-based stats. Identities = 78/317 (24%), Positives = 131/317 (41%), Gaps = 18/317 (5%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 R +LAPM GV +S R + E L + E + L + L + Sbjct: 47 RTVLAPMAGVTNSAFRTIAKEFG-AGLVVMEMISEKGLLYNNEKT------LHMLHIDEN 99 Query: 62 GTLVRVQLLGQFPQWLAENAARAV-ELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 + +QL G + L A + VD+N GCP V + GA L+DP+ IY Sbjct: 100 EHPMSIQLFGGDAEGLKRAADFIQTNTKADIVDINMGCPVNKVVKNEAGAKWLRDPDKIY 159 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 K + + +P++VK+R GW E A A + AG + L +HGRT+EQ Y Sbjct: 160 HIVKEVTSVL--DIPLTVKMRTGWADSSLAVENALAAESAGVSALAMHGRTREQMYTGT- 216 Query: 181 IDWQAIGDI-RQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY 239 D + + + + IP I NG++ Q A+ + G DAVMIGR A+N P L + + Sbjct: 217 CDHETLARVSKAITKIPFIGNGDVRSVQDAKFMIEEIGVDAVMIGRAAMNNPYLFTQINH 276 Query: 240 ------NEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQH 293 P +P+ + + + + + + V + + + A ++ Sbjct: 277 FFETGQELPDLPFAKKLDIAKDHLKRLINLKGETIAVREFRGLAPHYLRGTAGAAKVRGA 336 Query: 294 VRVLNNSPDIARAIQAI 310 V ++ + + Sbjct: 337 VSRAETLAEVEAIFETV 353 >UniRef50_C8WHM7 TIM-barrel protein, nifR3 family n=2 Tax=Coriobacteriaceae RepID=C8WHM7_EGGLE Length = 330 Score = 294 bits (753), Expect = 3e-78, Method: Composition-based stats. Identities = 96/319 (30%), Positives = 139/319 (43%), Gaps = 22/319 (6%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 R+LLAPM GV D R L E DL TE V + P Sbjct: 12 RLLLAPMAGVSDEAFRTLCREQG-ADLTYTEMVSAKGLSYANEKTR------HLLRLAPG 64 Query: 62 GTLVRVQLLGQFPQWLAENAARAV-ELG--SWGVDLNCGCPSKTVNGSGGGATLLKDPEL 118 V VQL G P +A AA E+G +D+N GCP++ + G G+ L+KDP L Sbjct: 65 EDQVAVQLFGHEPDTMAAQAAWIEREMGQSLAYLDINMGCPARKIVSKGDGSALMKDPAL 124 Query: 119 IYQGAKAMREAVPAHLPVSVKVRLGWDSGEKK-FEIADAVQQAGATELVVHGRTKEQGYR 177 +A+R AV PV+VK R GW G++ E A ++ AGA + VHGR EQ YR Sbjct: 125 AASIVRAVRAAVS--RPVTVKFRRGWAEGDETAPEFARRMEDAGACAIAVHGRYAEQLYR 182 Query: 178 AEHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVV 237 +W AI +++ +++PV+ NG++ A +GCDAVMI R A P L Sbjct: 183 GR-AEWGAIARVKEAVSVPVVGNGDVRSGADAVAITERTGCDAVMIARAAEGNPWLFAQA 241 Query: 238 KYNEPRMPWP------EVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELF 291 K P P E +AL +++ RL ++ R+++ + A Sbjct: 242 KAALAGEPEPDGPTVEERIALARRHARLLSA--REGRNIVRMRKHAMWYLAGLPGAAAAR 299 Query: 292 QHVRVLNNSPDIARAIQAI 310 + + D + Sbjct: 300 GRINGCVSVEDFDEVFDEL 318 >UniRef50_D0NNQ3 tRNA-dihydrouridine synthase, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0NNQ3_PHYIN Length = 377 Score = 293 bits (751), Expect = 5e-78, Method: Composition-based stats. Identities = 78/310 (25%), Positives = 125/310 (40%), Gaps = 15/310 (4%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 + ++APM + R L ++ D C T + + + Sbjct: 25 KRIVAPMVDQSELAFRMLCRKLG-ADCCYTPMLHSRLFAESAEYREK------MFEHHIQ 77 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + VQ G P+ + AA+ VE VDLN GCP G+ L+ D E + Sbjct: 78 DRPLVVQFCGNDPKTVL-AAAKMVEGHCDAVDLNLGCPQGIARKGHYGSFLMHDKETVKA 136 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYR-AEH 180 K + + ++PV+VK+R+ D E E AD +Q+AG L VHGRTKE Sbjct: 137 TVKTLSAGL--NIPVTVKIRVFPDDNE-TLEFADMLQEAGCDLLTVHGRTKEMNKTAVRE 193 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 ++W I I++RL IPVIANG I + +C+ +GCD VM G L P L N Sbjct: 194 VNWDIIRRIKERLTIPVIANGGIETHEDIARCLEATGCDGVMSSEGLLENPALFA--DTN 251 Query: 241 EPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNNS 300 + L ++Y + R L ++ ++L + + Sbjct: 252 NTPGEDTSFLELARQYLECATLYPPASDKIVRA-HLFKILFQDLRVHSDLRDALAAAKSQ 310 Query: 301 PDIARAIQAI 310 ++ + + Sbjct: 311 QEMVEIVDEL 320 >UniRef50_Q0F181 Dihydrouridine synthase TIM-barrel protein nifR3 n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F181_9PROT Length = 341 Score = 293 bits (750), Expect = 6e-78, Method: Composition-based stats. Identities = 79/317 (24%), Positives = 136/317 (42%), Gaps = 17/317 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 ++LAPM G+ D R + L +TE + + + R+ Sbjct: 20 LVLAPMAGITDLPFRRICKRFG-VGLMVTEMIASRAVDMGRERTERMAE------LGDDE 72 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 V +Q+ G P+++ E A AV G+ VD+N GCP K + G+ +L+D Sbjct: 73 HPVSIQIAGSDPEFVTEAARWAVGHGADFVDINMGCPVKKICKQVAGSAMLRD--EALVA 130 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGEKKFE-IADAVQQAGATELVVHGRTKEQGYRAEHI 181 +PV++K+R GWD K + IA + +G L VHGRT+ Q + H Sbjct: 131 RVLAAVVAAVDVPVTLKIRTGWDDQSKNVQNIARIAEDSGIQLLTVHGRTRAQMFHG-HA 189 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN- 240 W+ IG + ++IPVI NG+I D +SA++ + +S CD VM+GR P + V Sbjct: 190 CWEDIGLAKAAVSIPVIGNGDIVDAESAREMIRVSNCDGVMVGRAVQGNPWVLGEVHAAI 249 Query: 241 -----EPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVR 295 P+ E ++ ++ R + ++ + + K + E Q + Sbjct: 250 AGLPIPPKPTAAERWLIVDEHMRHLVEHHGIRTASKLARKHVIWYSKGLHGSAEFRQSFQ 309 Query: 296 VLNNSPDIARAIQAIDI 312 V+ + + A + Sbjct: 310 VMTDWQQMMDFAAAYFL 326 >UniRef50_Q5CSA9 Dus1p, tRNA dihydrouridine synthase (Fragment) n=3 Tax=Cryptosporidium RepID=Q5CSA9_CRYPV Length = 409 Score = 293 bits (750), Expect = 7e-78, Method: Composition-based stats. Identities = 70/316 (22%), Positives = 124/316 (39%), Gaps = 16/316 (5%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 + +LAPM + R + + DL + ++ + N Sbjct: 20 KTVLAPMVDGSELAFRLICKKYG-CDLGYSPMYHS-GLFSKLQGYRET-----NFQTCEE 72 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + VQ G P+ L + + + G+D+N GCP GA LL +P+L+ + Sbjct: 73 DDPMIVQFCGNDPETLVKASKFIDDK-VKGIDINFGCPQNIAKRGNYGAFLLSNPDLMER 131 Query: 122 GAKAMREAVPAHLPVSVKVRLG-WDSGEKKFEIADAVQQAGATELVVHGRT-KEQGYRAE 179 + E+ PVS K+R+ + + ++ AGA + VHGRT +G Sbjct: 132 IISTLSES-DLKCPVSCKIRILDHHDLQPTINLIKRLESAGACMIAVHGRTMTSRGVLTG 190 Query: 180 HIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY 239 +W+A+ ++ R +IP IANG I +++ Q+C+ +G DAVM G L P L + K Sbjct: 191 PANWEALKILKSRCSIPFIANGGISNYEDIQKCLNYTGADAVMSAEGILENPWLFQGFKT 250 Query: 240 NEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRK---EYDEATELFQHVRV 296 E P + +Y +V I+ L + A + Sbjct: 251 PEAINNKPSQFQIALEYLDYCILYPPP--NVGIIRTHLYRIFHTIFSLPGAHIFRDEINN 308 Query: 297 LNNSPDIARAIQAIDI 312 + + +Q ++ Sbjct: 309 SHQVHEFQLFVQNLEN 324 >UniRef50_C6C170 Dihydrouridine synthase DuS n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6C170_DESAD Length = 323 Score = 292 bits (748), Expect = 1e-77, Method: Composition-based stats. Identities = 77/315 (24%), Positives = 133/315 (42%), Gaps = 15/315 (4%) Query: 4 LLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGT 63 LAP+ G D R L + + TE V V K + P Sbjct: 12 WLAPLAGYSDLPFRMLCRKRG-CAVACTEMVSVKGLKYDGKGTK------ALLATCPEDN 64 Query: 64 LVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGA 123 + VQL G PQ ++ + ++ G DLN GCP K V +GGG+ L DP+ + + A Sbjct: 65 PLVVQLFGGEPQDYSDTMPQLIDEGYSFFDLNSGCPVKKVLKTGGGSALHLDPDRLVETA 124 Query: 124 KAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRAEHID 182 AM V VK+RLG+ +GE EIA ++ G L +H R +Q + + D Sbjct: 125 SAMVRVAGEGK-VGVKIRLGFMNGEDNFLEIAKRLEDTGVAWLTMHPRYAKQMFSGQ-AD 182 Query: 183 WQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNEP 242 W + ++Q ++IPVI +G+++ + +C+ +G D +M RGAL P + Sbjct: 183 WSKLAVLKQNVSIPVIGSGDLFTAEDGMECIKQTGIDGIMFARGALFDPEIFARYLKLLD 242 Query: 243 RM-----PWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVL 297 P ++ ++++ + + D +I+ L K D + + Sbjct: 243 DPKCATLPPFDLGKTMEEHINMTRDFDGSNRSFRKIRSILPRYAKGMDGIRSIRTKLTAC 302 Query: 298 NNSPDIARAIQAIDI 312 + ++ A + + Sbjct: 303 EDWEELLEAAREVST 317 >UniRef50_Q6AJZ5 tRNA-dihydrouridine synthase n=1 Tax=Desulfotalea psychrophila RepID=Q6AJZ5_DESPS Length = 328 Score = 292 bits (748), Expect = 1e-77, Method: Composition-based stats. Identities = 81/313 (25%), Positives = 137/313 (43%), Gaps = 14/313 (4%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 +LAP+ G D R L + D ++E + + + L P Sbjct: 13 FVLAPLAGYTDLSFRLLCHQFG-ADYTVSEMISCHGLFYNQQRTLEMLASL------PEE 65 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 V QL G P +A+ + +D+N GCP + V G GA L+ PEL Y Sbjct: 66 RPVSFQLFGAEPDIMAKATLILNDFQPDMIDINMGCPVRKVTKKGAGAALMSTPELAYDV 125 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGEKK-FEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 +++ + +PV+VK R G S E E ++AGA + VHGRT+ Q + Sbjct: 126 IRSVVDN--TDIPVTVKFRAGVSSTELNGVEFGLMTERAGAAAVAVHGRTRAQAFSG-VA 182 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNE 241 D I ++++ L+IPVI NG+I +Q MA +GCD VM+GRGAL P + + + Sbjct: 183 DRGIIKEVKEALSIPVIGNGDILSYQDGLDMMAETGCDGVMVGRGALGNPWVFQ---ASG 239 Query: 242 PRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNNSP 301 + A ++ L ++ + + IK +S K+ ++ L + ++ Sbjct: 240 KPANIHGLAAGALQHLLLMERFNPVERVLGLIKNHMSKYFKDMPGSSRLRTAIFTASSFL 299 Query: 302 DIARAIQAIDIEK 314 ++ I + + Sbjct: 300 ELKGMITELSNPE 312 >UniRef50_D0WEP2 tRNA-dihydrouridine synthase B n=2 Tax=Slackia RepID=D0WEP2_9ACTN Length = 318 Score = 292 bits (748), Expect = 1e-77, Method: Composition-based stats. Identities = 77/313 (24%), Positives = 128/313 (40%), Gaps = 22/313 (7%) Query: 8 MEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGTLVRV 67 M GV D + R L E DL TE + + V + Sbjct: 1 MAGVNDIVFRRLCLEQG-CDLTYTEMISSKALSFANEKTR------HLLDLAEGERRVAI 53 Query: 68 QLLGQFPQWLAENAARAVELGSWG---VDLNCGCPSKTVNGSGGGATLLKDPELIYQGAK 124 QL G P+ +A AA + +D+N GCP+ + G G+ L++D +L + Sbjct: 54 QLFGHEPKVMAREAAWVEDELGDALALIDINMGCPAHKIVKKGDGSALMRDQDLAASIVR 113 Query: 125 AMREAVPAHLPVSVKVRLGWDSGEKK-FEIADAVQQAGATELVVHGRTKEQGYRAEHIDW 183 + AV PV+VK R G+ + E+ + ++ AGA + VHGRT Q YR +W Sbjct: 114 DVARAVSC--PVTVKFRRGFGAEEETAVDFGLRMEDAGAAAVTVHGRTAAQMYRG-PSEW 170 Query: 184 QAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY---- 239 + + ++ L++PVI NG+I SA + +GCD VMI RGA P + V+ Sbjct: 171 ECVARVKAALSVPVIGNGDIVSGASAADMVRATGCDGVMIARGAQGNPWIFADVRRVLDG 230 Query: 240 --NEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVL 297 P + V + +++ L V +++ + + A+ + Sbjct: 231 MPPAPDPTRQDRVEMARRHIHLLSSRLG--NTVVYMRKHVMWYLHGVPGASRARAALNAC 288 Query: 298 NNSPDIARAIQAI 310 D R + + Sbjct: 289 VTVDDFDRVLDEL 301 >UniRef50_D1VTQ2 Probable tRNA-dihydrouridine synthase n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VTQ2_9FIRM Length = 310 Score = 292 bits (747), Expect = 1e-77, Method: Composition-based stats. Identities = 75/320 (23%), Positives = 145/320 (45%), Gaps = 17/320 (5%) Query: 1 MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTP 60 ++ +APM G D R+L+ E N D +TE V + L+ + P Sbjct: 2 IKFFMAPMAGYTDRAFRQLIYE-NGLDHAVTEMVSARALCFNDRKT------LELLKKFP 54 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 VQ+ + +++ + + +D+N GCP+ + +G G+ L+K+P L+Y Sbjct: 55 GEKNTGVQIFASDVESISKASYLLNDFDFSYIDINMGCPAPKIVKNGCGSALIKNPNLVY 114 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 + K + +S+K R +D+ +I A Q AGA + VH R++E+ Y+ + Sbjct: 115 ELVKGAVKNSNKK--ISIKTRKSFDNT-LSLDIIRAAQDAGAFAVTVHPRSREEYYKNKS 171 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 DWQ + I++ L IP+I NG+I + A + D + IGRGA+ P + +K Sbjct: 172 -DWQYLIKIKKFLTIPLIGNGDILTVEDALYKIKKYDVDGIAIGRGAIENPLIFSQIKKA 230 Query: 241 EPRMPWPE-----VVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVR 295 + E + +L ++ LE + +++ +Y K + E+ + Sbjct: 231 LKGEKYEELNFNQRIDILLRHLYLEVNYKGQRQAILNMRKTYAYYLKNLKNSKEIRNKLN 290 Query: 296 VLNNSPDIARAIQAIDIEKL 315 V N+ ++ + ++ E++ Sbjct: 291 VENDYTNVVKILEEY-REQM 309 >UniRef50_C9LMP9 tRNA-dihydrouridine synthase n=1 Tax=Dialister invisus DSM 15470 RepID=C9LMP9_9FIRM Length = 330 Score = 292 bits (747), Expect = 1e-77, Method: Composition-based stats. Identities = 89/317 (28%), Positives = 134/317 (42%), Gaps = 17/317 (5%) Query: 4 LLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGT 63 LLAPM GV D R + ++ L E V + Sbjct: 16 LLAPMAGVSDLAYRVIARKMGAA-LTTAEMVSAKGLYYHNEKTKD------MLKIAEEEH 68 Query: 64 LVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGA 123 V +QL G P +A A + G+ VD+N GCP + V +G G+ L+K+ L + Sbjct: 69 PVSLQLFGSDPAVMALGAKVMEKAGADIVDINMGCPMQKVVKNGDGSALMKNVTLAAEII 128 Query: 124 KAMREAVPAHLPVSVKVRLGWD-SGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHID 182 A+ AV +PV++K+RLGW E+A A + AGA + VHGRT+E Y D Sbjct: 129 SAVTAAVK--IPVTIKMRLGWSRDTINAVELAMAAESAGAAAITVHGRTREDFYMGT-AD 185 Query: 183 WQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK---- 238 W+ I + + IPVI NG++ D +A+ M +GC AV IGR A P + V Sbjct: 186 WREIKKVVDAVRIPVIGNGDVGDGPAAKALMEETGCAAVAIGRAAWGNPWVFGAVNTYLE 245 Query: 239 --YNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRV 296 P W E +A+ +K+ V ++ S +AT L + + Sbjct: 246 TGEILPGPSWEERLAMARKHLHGLCVEKGERIAVREMRAHASRYFHGLPKATVLRREIMK 305 Query: 297 LNNSPDIARAIQAIDIE 313 + R + + E Sbjct: 306 ALTEEEFGRILTGYEKE 322 >UniRef50_Q5FMA1 Transcriptional regulator n=14 Tax=Firmicutes RepID=Q5FMA1_LACAC Length = 342 Score = 292 bits (747), Expect = 1e-77, Method: Composition-based stats. Identities = 85/320 (26%), Positives = 138/320 (43%), Gaps = 18/320 (5%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 RV++APM GV +S R + E L + E + + K L P Sbjct: 16 RVVVAPMAGVSNSAFRVVCKEFG-AGLVVCEMISDHGIIYRNKKT------LSMMDVDPR 68 Query: 62 GTLVRVQLLGQFPQWLAENAARA-VELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 + +Q+ G + L + A + +D+N GCP V + G+ L D IY Sbjct: 69 EHPMSIQIFGGTEETLLQAAQYIDQNTDADIIDINMGCPVPKVTKTDAGSKWLLDSNKIY 128 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEK-KFEIADAVQQAGATELVVHGRTKEQGYRAE 179 Q A+ + V PVSVK+R+GWD E A A Q+AGA+ + +HGRT++Q Y+ E Sbjct: 129 QMVHAVVQNVQK--PVSVKMRIGWDRKHVFAVENALAAQEAGASMIAMHGRTRKQMYQGE 186 Query: 180 HIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSR---- 235 DW+ + D+ Q L++P +ANG+I + A++ + GC AVM+GR AL P + + Sbjct: 187 -ADWEVLHDVAQVLDVPFVANGDIATPELAKKALDDIGCTAVMVGRAALGNPWILKDMVH 245 Query: 236 --VVKYNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQH 293 P E V + + + V +Q +Y K + Sbjct: 246 YLETGETLPPQTVREKVETAKHQLQGLIEIHGEKRAVPEFRQQAAYYLKGIPRSARTRAK 305 Query: 294 VRVLNNSPDIARAIQAIDIE 313 + + ++ + E Sbjct: 306 INEVWTRQEVYDLLDNFVDE 325 >UniRef50_A6DPY9 Putative uncharacterized protein n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DPY9_9BACT Length = 330 Score = 291 bits (746), Expect = 2e-77, Method: Composition-based stats. Identities = 93/320 (29%), Positives = 151/320 (47%), Gaps = 16/320 (5%) Query: 1 MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTP 60 ++ LAPMEGV L+R + + DL TEF+R+ ++ + + Sbjct: 7 FKLSLAPMEGVTHPLMRHQIAQHGGLDLLCTEFIRISSHKPSMRSLKKQIVK-------S 59 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 + VQ++G + +AE+A V+ G+ VD+N GCP+K G G+ +LKDP+L Y Sbjct: 60 GDIPLSVQIMGNNAELMAESAKLVVDCGADAVDVNMGCPTKRAVKGGVGSAMLKDPKLCY 119 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 Q +MRE VP L S K+R G+D+ E FEI A+ +GA L VH R + Y H Sbjct: 120 QVLASMREQVPCAL--SAKIRAGFDNKEGVFEILQAIVDSGADYLAVHPRRRVDHYEG-H 176 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY- 239 DW+ I ++++ IPVI NG++ A + + CD VMIGRGAL+ P + Sbjct: 177 SDWRIISALKEKSPIPVIGNGDVRTAADAVRMFKETQCDGVMIGRGALSNPWIFLQTSQV 236 Query: 240 -NEPRMPWPEVVALLQKYTRLEKQG----DTGLYHVARIKQWLSYLRKEYDEATELFQHV 294 ++ + P + Y + + D + + K+ L Y E + + Sbjct: 237 LSDQEVFIPNWEDIYHFYHGIAQAFSDFCDNEQGTLNKTKEMLMYFSVNLPEPAPFRKAI 296 Query: 295 RVLNNSPDIARAIQAIDIEK 314 + ++ + + EK Sbjct: 297 GRSQSIDEMMNKLHSFLKEK 316 >UniRef50_Q884C6 tRNA-dihydrouridine synthase C n=13 Tax=Proteobacteria RepID=DUSC_PSESM Length = 317 Score = 291 bits (746), Expect = 2e-77, Method: Composition-based stats. Identities = 126/312 (40%), Positives = 191/312 (61%), Gaps = 6/312 (1%) Query: 1 MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTP 60 M++ LAPMEG++D ++R+ LT+V D C+TEF+RV ++L+P F++ E N ++T Sbjct: 1 MQIALAPMEGLVDDILRDALTKVGGIDWCVTEFIRVSERLMPAHYFYKYASEFHNGAKTD 60 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 +GT +R+QLLG P LAENAA A ELG+ +DLN GCP+KTVN S GGA LLK+PEL++ Sbjct: 61 AGTPLRLQLLGSDPVCLAENAAFACELGAPVLDLNFGCPAKTVNRSRGGAILLKEPELLH 120 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 +R AVP +PV+ K+RLG+++ + + A A+ GA ++VVH RTK GY+ Sbjct: 121 TIVSQVRRAVPKDIPVTAKMRLGYENTDGALDCARALADGGAAQIVVHARTKVDGYK-PP 179 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 W+ I I++ + +PV+ANGEIW + ++C I G +MIGRG + P+L+R + Sbjct: 180 AHWEWIARIQEVVKVPVVANGEIWTVEDWRRCREICGARDIMIGRGLVARPDLARQIAAA 239 Query: 241 EP-----RMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVR 295 + M W E+ +L+ + + T + R+KQWL L K Y EAT +F +R Sbjct: 240 QKGEEVVPMTWAELQPMLRTFWQACLVKMTLVQAPGRLKQWLVLLTKSYPEATLMFNTLR 299 Query: 296 VLNNSPDIARAI 307 + I + Sbjct: 300 RETDCDRITVLL 311 >UniRef50_A5FL15 tRNA-dihydrouridine synthase B-like protein n=14 Tax=Bacteroidetes RepID=A5FL15_FLAJ1 Length = 332 Score = 291 bits (745), Expect = 3e-77, Method: Composition-based stats. Identities = 79/319 (24%), Positives = 134/319 (42%), Gaps = 19/319 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 +LLAPME V D R L + D+ +EF+ + Sbjct: 16 LLLAPMEDVSDPPFRRLCKT-HGADMMYSEFISSEGLIRDAIKSRMKLDIFDY------E 68 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 V +Q+ G + + ++ + VD+N GCP K V G GA +LKD +L+ + Sbjct: 69 RPVGIQIFGGDEEAMEMSSKIVSTVKPDLVDINFGCPVKKVVCRGAGAGVLKDVDLMVRL 128 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGEKKF-EIADAVQQAGATELVVHGRTKEQGYRAEHI 181 KA+ + LPV+VK RLGWD E+A+ +Q G L +H RT+ Q Y+ H Sbjct: 129 TKAVIK--GTDLPVTVKTRLGWDESSINIDEVAERLQDIGVQALTIHARTRAQMYKG-HS 185 Query: 182 DWQAIGDIRQRLNI--PVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY 239 DW I ++ I P+ NG+I + A Q G D +MIGR A+ P + +K+ Sbjct: 186 DWSHIARVKNNPRITMPIFGNGDIDSPEKALQYKNEYGIDGIMIGRAAIGYPWIFNEIKH 245 Query: 240 ------NEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQH 293 + P + V + + + + + +++ + K E Q Sbjct: 246 YFKTGEHLPAPTVIDRVEAARNHLKWSMEWKGERLGIVEMRRHYTNYFKGIHSFKEFKQK 305 Query: 294 VRVLNNSPDIARAIQAIDI 312 + + ++ ++ I+ Sbjct: 306 LVTTDEPENLFAIMKEIEQ 324 >UniRef50_UPI000058804E PREDICTED: similar to MGC53781 protein n=1 Tax=Strongylocentrotus purpuratus RepID=UPI000058804E Length = 655 Score = 291 bits (745), Expect = 3e-77, Method: Composition-based stats. Identities = 82/319 (25%), Positives = 128/319 (40%), Gaps = 22/319 (6%) Query: 6 APMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGTLV 65 AP+ V + R + ++ D+ E + L E R PS + Sbjct: 287 APLTTVGNLPFRAVCKKLG-ADITCGEMAMCTNLLQGQ------SSEWALLRRHPSEDIF 339 Query: 66 RVQLLGQFPQWLAENAARAVE-LGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAK 124 VQL G FP + A + L +D+N GCP V G G+ L+ + + Sbjct: 340 GVQLCGGFPDTMTRCAELLNDRLDIDFIDINVGCPIDLVYHKGAGSGLMNRMGKFQEIVR 399 Query: 125 AMREAVPAHLPVSVKVRLGW-DSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHIDW 183 M + +P++VK+R G + +I + GA+ + VHGRT+EQ Y + DW Sbjct: 400 GMSSVL--DIPLTVKMRTGVHNDNPVAHKIVRRIYDWGASVVTVHGRTREQRYS-KLADW 456 Query: 184 QAIGDIRQRLN-IPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY-NE 241 + D Q + P I NG+I ++ + SG MI RGAL P + +K Sbjct: 457 DYLKDCVQAADPHPFIGNGDILSYEDSNFFREQSGATGQMIARGALIKPWIFTEIKEQRH 516 Query: 242 PRMPWPEVVALLQKYTR--LEKQGDT--GLYHVARI-KQWLSYLRKEYDEATELFQHVRV 296 + E +LQ Y L G G+ R +WLS+L + L + Sbjct: 517 WDISSSERFDILQDYINLGLLHWGSDSEGVRKTRRFLLEWLSFLHRYIPVG-LLETLPQK 575 Query: 297 LNNSPDIARAIQAIDIEKL 315 +N P + D+E L Sbjct: 576 INERPPY--YVGRDDLETL 592 >UniRef50_A0LJ96 Putative TIM-barrel protein, nifR3 family n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LJ96_SYNFM Length = 352 Score = 290 bits (743), Expect = 4e-77, Method: Composition-based stats. Identities = 89/313 (28%), Positives = 144/313 (46%), Gaps = 22/313 (7%) Query: 6 APMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGTLV 65 APM GV DS R L+ + + TE V + + + +C + P G + Sbjct: 27 APMAGVTDSAYRALMADFGAA-MVTTEMVSIQGLVRNQRATLDLCRQQ-----HPVGVPL 80 Query: 66 RVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKA 125 VQ+ G+ P +AE A + G+ +D+N GCP + V G GA LLKDP+ + +A Sbjct: 81 AVQVFGRDPAVMAEAARLVEQGGAALIDINAGCPVRKVVRQGAGAILLKDPDRLAAMVEA 140 Query: 126 MREAVPAHLPVSVKVRLGWDSGEKKFE-IADAVQQAGATELVVHGRTKEQGYRAEHIDWQ 184 ++ AV +PV+VK+R+GWD+ +A + AG + VHGRT Q Y DW Sbjct: 141 VKRAVS--VPVTVKIRVGWDNAANGVAGLARQLVSAGVDAITVHGRTAAQMYSGR-ADWS 197 Query: 185 AIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNEPR- 243 I +++ + +PVI NG++ + A++ + +GCD VMIGR +L P L V+ R Sbjct: 198 RIAEVKAAVAVPVIGNGDVTSPELAERMIHETGCDGVMIGRASLGNPWLFAVISRRWGRG 257 Query: 244 ------MPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVL 297 W + + + + LE +K+ L + K ++ L + Sbjct: 258 ARQGDCPGWNDFLRTAEAH--LESFRTMRPRADGHLKKLLIWYSKGCPDSAGLR---CRI 312 Query: 298 NNSPDIARAIQAI 310 I + A Sbjct: 313 AGPDGIESMLAAF 325 >UniRef50_D1R8P9 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R8P9_9CHLA Length = 342 Score = 290 bits (743), Expect = 5e-77, Method: Composition-based stats. Identities = 84/315 (26%), Positives = 134/315 (42%), Gaps = 17/315 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 V AP+ G D R++ + L E V++ + R Sbjct: 18 VFYAPLAGCSDFPFRQMSARYS-PGLMYCEMVKMDALVRHDPNTFR------MLDFDKDM 70 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 + QL G PQ A+ A +LG VDLNCGCP V G G+ LLK+P LI + Sbjct: 71 HPIGGQLCGSKPQLAAKAAKIIEDLGFDVVDLNCGCPVDKVTKDGSGSGLLKNPLLIGEI 130 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGEK-KFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 M AV +PV+VK+R GWD EI ++AGA + +HGRT++Q YR Sbjct: 131 LSEMVAAVK--IPVTVKIRAGWDDENLCAEEITQIAEKAGAKAITIHGRTRQQAYRG-PA 187 Query: 182 DWQAIGDIRQ-RLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 +W I +Q +I VI NG++ D SA++ +GCDAV++ RG + P +++ + Sbjct: 188 NWDHIKASKQVAKHIKVIGNGDVMDPTSAKRMFEYTGCDAVLVARGTMGQPWIAQDILNY 247 Query: 241 EPR-----MPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVR 295 + L ++ ++ V +++ + K E + Sbjct: 248 LQGGTIRVHTPEDCRQALYEHFLCTERYYNPRQVVIEMRRVGCWYIKSSGGTREFRGLIS 307 Query: 296 VLNNSPDIARAIQAI 310 ++ + IQ Sbjct: 308 RASSPDQVKDLIQNF 322 >UniRef50_A1VHK2 Dihydrouridine synthase, DuS n=10 Tax=Desulfovibrionaceae RepID=A1VHK2_DESVV Length = 449 Score = 290 bits (742), Expect = 5e-77, Method: Composition-based stats. Identities = 78/316 (24%), Positives = 130/316 (41%), Gaps = 15/316 (4%) Query: 4 LLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGT 63 LAP+ G D R L + +C TE V + + TP Sbjct: 35 WLAPLAGYSDLSFRLLCRKAGAA-VCCTEMVSAKGLIYYSPGTRD------LLATTPEDA 87 Query: 64 LVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGA 123 + VQL G P + +E G DLN GC V +G GA +L+D A Sbjct: 88 PLVVQLFGCDPDIMVRAMEPLLEQGFRWFDLNMGCSVPKVVKTGCGAAMLRDVPQALAVA 147 Query: 124 KAMREAVPAHLPVSVKVRLGWD-SGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHID 182 +AM A V K RLGWD E ++ A+ GA + +H R QG+ E Sbjct: 148 RAMLRTAGAGR-VGFKFRLGWDVGQEVWADLGRALADLGAGWVTLHPRYARQGFSGE-AR 205 Query: 183 WQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN-- 240 W +G++ + +++PVIA+G+++ +C+ +G +VM RGALN P + + Sbjct: 206 WSTLGELVRAVSVPVIASGDLFTAADGVRCLRETGVASVMYARGALNDPGVFHAHRERVA 265 Query: 241 ---EPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVL 297 +P + AL+ ++ L +Q G + +++ ++ + A L QH+ Sbjct: 266 GRPDPGYTPQRLRALITRHAELARQYAPGRSALLKMRTFVPRYVRHLPGARALRQHLASC 325 Query: 298 NNSPDIARAIQAIDIE 313 + + + Sbjct: 326 FEWEMLDELLATFFAD 341 >UniRef50_UPI000194DF67 PREDICTED: dihydrouridine synthase 3-like (S. cerevisiae) n=2 Tax=Taeniopygia guttata RepID=UPI000194DF67 Length = 718 Score = 290 bits (742), Expect = 6e-77, Method: Composition-based stats. Identities = 73/321 (22%), Positives = 128/321 (39%), Gaps = 24/321 (7%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 ++ LAP+ + R + D+ E + L E R + Sbjct: 374 KLYLAPLTTCGNLPFRRICKRFG-ADVTCGEMAVCTNLLQGQ------SSEWALLKRHHT 426 Query: 62 GTLVRVQLLGQFPQWLAENAARAVEL-GSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 + VQL G FP + + A VD+N GCP V GGG L+ Sbjct: 427 EDIFGVQLEGAFPDTMTKCAELLNRTIDVDFVDINVGCPIDLVYKKGGGCALMTRSNKFE 486 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEK-KFEIADAVQQAGATELVVHGRTKEQGYRAE 179 Q + M + +PV+VK+R G ++ +++ GA+ + +HGR++EQ Y Sbjct: 487 QIVRGMNSVL--DVPVTVKIRTGVQEKVNVAHKLIPRIREWGASMVTLHGRSREQRY-TR 543 Query: 180 HIDWQAIGDIRQ-RLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK 238 DW I + + +P+ NG+I ++ A + M + G +MI RGAL P L +K Sbjct: 544 SADWHYIAECARLASPMPLFGNGDILSYEDANRAMQM-GVSGIMIARGALIKPWLFTEIK 602 Query: 239 Y-NEPRMPWPEVVALLQKYTRL-EKQGDTGLYHVARIKQ----WLSYLRKEYDEATELFQ 292 + E +L+ +T + + V + ++ WLS+L + L Sbjct: 603 EQRHWDISSSERFEILKDFTNYGLEHWGSDTQGVEKTRKFLLEWLSFLCRYIPVG-LLEH 661 Query: 293 HVRVLNNSPDI---ARAIQAI 310 + +N P ++ + Sbjct: 662 LPQKINERPPYYLGRDYLETL 682 >UniRef50_Q6SFW7 NifR3/Smm1 family protein n=1 Tax=uncultured marine bacterium 578 RepID=Q6SFW7_9BACT Length = 322 Score = 289 bits (741), Expect = 7e-77, Method: Composition-based stats. Identities = 80/311 (25%), Positives = 144/311 (46%), Gaps = 21/311 (6%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRV-VDQLLPVKVFHRICPELQNASRTP 60 +VLLAPM G D R + E L +E V + L K HR Sbjct: 11 KVLLAPMAGTSDKPFRMICREQGAA-LTTSEMVVMQKHLLNTNKSKHR-------LDFRS 62 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 + + +Q+ G Q LAE+A +A+E G+ +D+N GCP+K V G+ L+K+ +L+ Sbjct: 63 EQSPISIQIAGSESQELAESAKQALEFGADIIDINMGCPAKKVCNKAAGSALMKNEKLVE 122 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWD-SGEKKFEIADAVQQAGATELVVHGRTKEQGYRAE 179 KA+ AV ++PV++K+R GW+ + IA + G L +HGRT+ Q Y + Sbjct: 123 DIIKAVVNAV--NIPVTLKMRTGWNEENKNAPTIAKIAEDNGIKMLAIHGRTRAQKYNGD 180 Query: 180 HIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY 239 ++ + I+ ++IPV+ANG+I Q A++ + +G DAVM+GR P L + Sbjct: 181 -AEYDTVKKIKGIVSIPVVANGDITSAQKAKKVLDYTGADAVMLGRATQGNPWLVGQINN 239 Query: 240 NEPRMPWP------EVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDE--ATELF 291 P + ++L+ ++ ++ + + D+ + + Sbjct: 240 YLKTGKSPKAPLLDKKISLILRHILQIHDFYGHKMGTQLSRKHIFWYSMHLDQEKGSAFW 299 Query: 292 QHVRVLNNSPD 302 ++ + + + Sbjct: 300 PNINRVTDHSE 310 >UniRef50_Q127F8 Dihydrouridine synthase, DuS n=7 Tax=Proteobacteria RepID=Q127F8_POLSJ Length = 344 Score = 289 bits (741), Expect = 7e-77, Method: Composition-based stats. Identities = 142/317 (44%), Positives = 193/317 (60%), Gaps = 10/317 (3%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 VLLAPMEG+LD ++R++LT V D C++EF+R+ DQLLP +VF RI PEL N RT +G Sbjct: 9 VLLAPMEGLLDFVLRDILTRVGGIDRCVSEFIRITDQLLPERVFTRIVPELHNGGRTLAG 68 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 VR QLLG P +AENAAR LG G+DLN GCP+ VN GGGA+LLK+PE + Sbjct: 69 VPVRAQLLGSDPACMAENAARLATLGPAGIDLNFGCPAAVVNRHGGGASLLKEPETLLAI 128 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHID 182 A+R AVPA +PVS K+RLG++ + E A A+ + GA ELVVH RTK Q Y+ Sbjct: 129 VSAVRRAVPAGMPVSAKMRLGYNDDSRAVECALAIAEGGAGELVVHARTKAQAYK-PPAY 187 Query: 183 WQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY--- 239 W+ I DIR + IPV+ANGEIW A++C SGC +MIGRGA+ P L +K Sbjct: 188 WERIADIRAAVQIPVVANGEIWTVDDARRCREASGCSMLMIGRGAVADPGLGLAIKAAMS 247 Query: 240 ------NEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQH 293 EP + W E+V LL + + R+KQWL++LR+ + +A +Q Sbjct: 248 HPAAGGQEPGITWAELVPLLADFWHVVCARLDARARPGRLKQWLNFLRRRFPQAEAAYQV 307 Query: 294 VRVLNNSPDIARAIQAI 310 ++ + + I + A+ Sbjct: 308 LKTITDPALIDEWLAAL 324 >UniRef50_D0U4P6 tRNA-dihydrouridine synthase n=2 Tax=uncultured SUP05 cluster bacterium RepID=D0U4P6_9GAMM Length = 324 Score = 289 bits (741), Expect = 8e-77, Method: Composition-based stats. Identities = 75/316 (23%), Positives = 134/316 (42%), Gaps = 19/316 (6%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 +V LAPM G D R + L +E V + LL + Sbjct: 13 QVFLAPMAGTSDKPFRAICRAQGAA-LTTSEMVVIQKHLLGTNKSK------HRLDFSGE 65 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + +Q+ G LA +A +A++ G+ +D+N GCP+K V G+ L++D L+ Sbjct: 66 PAPISIQIAGSQADELAYSAQQALKFGADIIDINMGCPAKKVCNKAAGSALMQDEALVKS 125 Query: 122 GAKAMREAVPAHLPVSVKVRLGWD-SGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 A+ AV +PV++K+R GW+ S + IA ++AG L VHGRT+E Y Sbjct: 126 ILNAVVSAV--DIPVTLKMRTGWNVSNKNAPTIAKIAEEAGIQMLSVHGRTREDKYTG-M 182 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 ++ I ++ ++ IPVIANG+I + AQ + +G D VM+GR P + + + Sbjct: 183 AEYDTIKAVKSQVGIPVIANGDITSAKKAQSVLQYTGADGVMVGRATQGNPWIIHEIDHY 242 Query: 241 E------PRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATE--LFQ 292 +P + + + ++ + + DE ++ Sbjct: 243 LKTGQKATDIPLNVKKQTILDHIKQIHAFYGEKLGTQLSRKHIFWYATHLDEKNAQTFWE 302 Query: 293 HVRVLNNSPDIARAIQ 308 V + + + ++ Sbjct: 303 KVNKITDHKLQYQLLE 318 >UniRef50_A4BCJ5 NifR3/Smm1 family protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BCJ5_9GAMM Length = 314 Score = 289 bits (741), Expect = 8e-77, Method: Composition-based stats. Identities = 140/308 (45%), Positives = 192/308 (62%), Gaps = 2/308 (0%) Query: 1 MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTP 60 M + LAPMEG+ D +R+L+T+ YDL ++EFVRVVDQLLP +VF PEL RT Sbjct: 1 MSIYLAPMEGLADHYLRKLITQCGGYDLAVSEFVRVVDQLLPKRVFLEQVPELHQQGRTG 60 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 +GT VRVQLLG PQ LAENA RA+ELGS G+DLN GCPSKTVN S GGA LL +PE IY Sbjct: 61 AGTPVRVQLLGSHPQALAENALRAIELGSHGLDLNFGCPSKTVNASKGGAVLLTEPESIY 120 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 +++R+A+P +S K+RLG++ +E A A++ GA E++VH RTK+QGY Sbjct: 121 AVVRSVRDALPGDQTLSAKMRLGFEDNSLMWECAHAIRDGGANEIIVHARTKQQGY-TPP 179 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 W D RL IP+I NGEIW A + + C ++M+GRGA+ P L+ + Sbjct: 180 AYWHLPADFEARLGIPMIINGEIWTPADAGRAQHEANCSSIMLGRGAVRNPWLASEITGR 239 Query: 241 EPRMP-WPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNN 299 + W +V L+ ++ + Q + Y R+KQWL++LR + EA LFQ +R LN Sbjct: 240 HNQKSDWSQVHQLVVQFWQEVTQQMSPRYCAGRLKQWLNHLRLSFVEAERLFQRIRRLNT 299 Query: 300 SPDIARAI 307 +I + + Sbjct: 300 IDEINQVL 307 >UniRef50_C8X244 Dihydrouridine synthase DuS n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X244_DESRD Length = 328 Score = 289 bits (740), Expect = 9e-77, Method: Composition-based stats. Identities = 76/313 (24%), Positives = 144/313 (46%), Gaps = 15/313 (4%) Query: 4 LLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGT 63 LAP+ G D R L E N + TE + V + + + P+ T Sbjct: 20 WLAPLAGFTDLPFRLLCRE-NGARVAHTEMISVKGLIYNSQGT------WDLLATAPADT 72 Query: 64 LVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGA 123 + VQL G P A+ E G +DLN GCP + V +G GA L++DP+ + + Sbjct: 73 PLVVQLFGADPDCFAQPVRWLTERGFHWIDLNAGCPVRKVIKTGAGAALMEDPQRLVRIM 132 Query: 124 KAMREAVPAHLPVSVKVRLGWD-SGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHID 182 + + A P VK+RL D S + + D + +AG + + +H RT QGY Sbjct: 133 QTIGRAAPVQA--GVKLRLPADGSTDGLLRLRDTLARAGVSWITLHPRTARQGY-GGLAQ 189 Query: 183 WQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLS-RVVKYNE 241 W A+ + + +P++A+G++W+ Q+A++C +G D +M RGAL+ P + + Sbjct: 190 WSALSRMAESSPVPIVASGDLWNAQAARRCFEQTGVDGIMFARGALHNPRIFKADLATGA 249 Query: 242 PRMPWPE---VVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLN 298 P + + AL++++ +L ++ D + +++ ++ K + A + + + Sbjct: 250 EEDPCTDTASIAALVRRHGQLCRRYDPSRSMLLKMRSFIPRYVKGFPGAKQARKGIIACQ 309 Query: 299 NSPDIARAIQAID 311 + + ++ Sbjct: 310 DWEAFEQYADQLE 322 >UniRef50_Q54XQ6 tRNA-dihydrouridine synthase 1-like protein n=1 Tax=Dictyostelium discoideum RepID=Q54XQ6_DICDI Length = 435 Score = 289 bits (740), Expect = 9e-77, Method: Composition-based stats. Identities = 72/312 (23%), Positives = 133/312 (42%), Gaps = 24/312 (7%) Query: 5 LAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGTL 64 +APM R L + D+ T + S P Sbjct: 56 VAPMVDHTFLAFRMLCRKYG-ADMVYTPMFHSKNFATCKTYRRD------YWSTCPEDRP 108 Query: 65 VRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAK 124 + VQ G P+W+ + A + +DLN GCP + G+ LL P +I + Sbjct: 109 LVVQFCGNEPEWVVKAAKYIED-HCDAIDLNLGCPQQIARRGNYGSFLLDKPHIILPIVQ 167 Query: 125 AMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQ-GYRAEHIDW 183 + + + +P+ K+RL + + ++A +Q+AG L +HGRTKEQ G+ + +W Sbjct: 168 ELHKHIK--VPIFCKIRL-LPNLDDTIKLALQLQEAGCQLLTIHGRTKEQKGHNSGIANW 224 Query: 184 QAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNEPR 243 +AI IR++L+IPVIANG + ++ +C+ +G D VM G L P+ +K Sbjct: 225 KAIRTIREQLSIPVIANGSVVQYEDIDRCLEETGADGVMSAEGILANPSFFSGLK----- 279 Query: 244 MPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKE-YDEATELFQHVRVLNNSPD 302 + + ++Y + T ++ + + + KE D ++L + + + + Sbjct: 280 ---VPIYQVAREYIDFTEIYKTSIHVT---RSHIFKMLKEKLDVYSDLRETMGATHTNDG 333 Query: 303 IARAIQAIDIEK 314 I ++ + Sbjct: 334 FRDIITDLETRE 345 >UniRef50_C4QMR1 tRNA-dihydrouridine synthase, putative n=1 Tax=Schistosoma mansoni RepID=C4QMR1_SCHMA Length = 441 Score = 289 bits (740), Expect = 9e-77, Method: Composition-based stats. Identities = 74/317 (23%), Positives = 125/317 (39%), Gaps = 30/317 (9%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 + +LAPM + R L + L T + L+ +K Sbjct: 11 KYVLAPMVDGSELAWRMLGRKYG-VQLTFTPMINSTAFLINMKYRR------SCLQFASE 63 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + VQ P A V+ VDLN GCP GA L + + + Sbjct: 64 DRPLIVQFCANSPDTFVRCAK-LVQPFCDAVDLNLGCPQGIAKRGHYGAFLQDEWNSLKE 122 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQ-GYRAEH 180 R ++ ++PV+ K+R+ + E+ + A ++ AGA+ L VHGRT+E G + Sbjct: 123 IIS--RASLELNVPVTCKIRI-FSDVERTVQYAKLLEAAGASMLTVHGRTREMKGQKTGL 179 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 DW I +++ + IPVIANG I QC+ + DAVM G L+ P L ++ Sbjct: 180 ADWNQIRAVKEAVKIPVIANGNIQYLSDVHQCLDSTKADAVMSAEGHLHNPALFLGIQ-- 237 Query: 241 EPRMPWPEVVALLQKYTRLEKQGDTG----LYHVARIKQWLSYLRKEYDEATELFQHVRV 296 P + + +Y L ++ T H+ ++ DE +E + Sbjct: 238 ------PCIYDMCFEYLDLVEKYPTSMQIIRGHIFKLCHHA------LDEHSEYRSLIGT 285 Query: 297 LNNSPDIARAIQAIDIE 313 ++ I +Q + + Sbjct: 286 SQSTKGIKEILQKMANQ 302 >UniRef50_C1SJZ7 tRNA-dihydrouridine synthase n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SJZ7_9BACT Length = 340 Score = 288 bits (738), Expect = 2e-76, Method: Composition-based stats. Identities = 83/315 (26%), Positives = 144/315 (45%), Gaps = 15/315 (4%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 +++ AP+ GV R+LL + D L TE V V + L S T S Sbjct: 19 KLIAAPLAGVTTPPFRKLLRKYFD-GLIYTEMVSVEGV------RRKADRTLSYLSITES 71 Query: 62 GTLVRVQLLGQFPQWLAENAARAVEL-GSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 + VQL G P+ E + + VD+N GCP K V SG G ++KDP Sbjct: 72 DQPIGVQLFGSKPEAYTEAIEVVQDYIKAEFVDINMGCPVKKVLKSGSGCAMMKDPVNSG 131 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRAE 179 + A ++A+ +P++VK+RLGWD E+ + GA + VHGRTK + + Sbjct: 132 KIVAAAKKALG-DVPLTVKIRLGWDKKNLNYNEMIKIAYEEGAEAVTVHGRTKTEMFSG- 189 Query: 180 HIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY 239 +++ I D + +P+I NG++ D + ++ +A +G D VMIGRG + P L + Sbjct: 190 VVNYDLIADAKANAKLPIIGNGDVVDVATYEKMLA-TGVDGVMIGRGMMKQPWLFESILN 248 Query: 240 NEPR---MPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRV 296 M + ++ L+++ R EK ++ + +K+++ + K A L + + Sbjct: 249 GRDPSGYMTYDKLYELIKELVRNEKIYKGEMFFLETVKKYIVWFLKGMPGAAALRNKLYM 308 Query: 297 LNNSPDIARAIQAID 311 ++ + Sbjct: 309 CPTETEMFVMLDEYF 323 >UniRef50_Q21L63 Dihydrouridine synthase, DuS n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21L63_SACD2 Length = 318 Score = 288 bits (738), Expect = 2e-76, Method: Composition-based stats. Identities = 136/317 (42%), Positives = 189/317 (59%), Gaps = 11/317 (3%) Query: 1 MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTP 60 MR+ LAPMEGV+D +R +++ V D+C+TEF+RV D +LP K+F + CPEL S TP Sbjct: 1 MRIFLAPMEGVVDHHMRNIISSVGGVDICVTEFIRVTDHVLPNKIFKKACPELDENSETP 60 Query: 61 S-----GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKD 115 + VRVQLLG P LA NAARA ELG+ +DLN GCP+KTVN GGA LL + Sbjct: 61 ALYRGAHCPVRVQLLGSNPSALAANAARAAELGAVAIDLNFGCPAKTVNRHKGGACLLDE 120 Query: 116 PELIYQGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQG 175 + ++ A+R+A PA PV+ K+RLG+ + + A A++ AGA EL VH R+K G Sbjct: 121 TDTVFDIVNAVRKATPASTPVTAKIRLGYLNRDSYLRNAKAIEAAGANELCVHARSKTDG 180 Query: 176 YRAEHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSR 235 Y+ W IGDIR L+IPV+ANGEIW + ++C S C M+GRG L P+L+ Sbjct: 181 YQ-PPAYWHYIGDIRDNLSIPVVANGEIWSLEDFKRCAEQSKCSDFMLGRGLLAKPDLAL 239 Query: 236 VVK-----YNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATEL 290 +K + W EV A ++ Q Y R+KQWL YL+++Y EA EL Sbjct: 240 EIKQYMAGEAFNPLSWDEVCAHVRTLFERNCQSYPPKYLGNRVKQWLFYLQRQYSEAAEL 299 Query: 291 FQHVRVLNNSPDIARAI 307 F+ ++ + + RA+ Sbjct: 300 FEAIKRERDEQALRRAL 316 >UniRef50_A7I0T0 NifR3 family protein n=9 Tax=Epsilonproteobacteria RepID=A7I0T0_CAMHC Length = 310 Score = 288 bits (737), Expect = 2e-76, Method: Composition-based stats. Identities = 78/311 (25%), Positives = 142/311 (45%), Gaps = 14/311 (4%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 + LAP+ G D +R ++ D ++E + + + L+ ++ + Sbjct: 9 LFLAPLAGFSDLPLRSVVKRFG-CDATVSEMISANALVFCSEK------SLKMIKKSENE 61 Query: 63 TLVRVQLLGQFPQWLAENAARAVE-LGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 T VQ+ G P+ + + + G G+DLNCGCP V G+ LL++ +L+ + Sbjct: 62 TPYFVQIAGSDPKIIKQAVEILNKIDGIDGIDLNCGCPVPKVVRQNAGSALLQNLDLLSK 121 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 + +++ S KVRLG+D+ IA AVQ AGA + +H RT+ GY A+ Sbjct: 122 LIEIIKKTSNKKYT-SAKVRLGFDTKNP-VNIALAVQNAGADFIAMHARTRAGGYSAKP- 178 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNE 241 D++AI + + IP+IANG I Q+A Q + ++ DA+MIGR + P + +K + Sbjct: 179 DYEAIAAAKSAVKIPLIANGNINS-QNANQILNLTKADALMIGRATIGNPWVFYEIKNQK 237 Query: 242 PRMPWPEV-VALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNNS 300 ++ ++ + + V ++ L K Y +AT + + N+ Sbjct: 238 TVAVDEKIKKEIILAHFDEMIKFYGDHGAV-IFRKHLHEYSKGYADATNFRCEINTITNA 296 Query: 301 PDIARAIQAID 311 + I+ Sbjct: 297 EKMRDKIKQFF 307 >UniRef50_Q47C15 Dihydrouridine synthase, DuS n=1 Tax=Dechloromonas aromatica RCB RepID=Q47C15_DECAR Length = 319 Score = 287 bits (736), Expect = 3e-76, Method: Composition-based stats. Identities = 130/297 (43%), Positives = 187/297 (62%), Gaps = 2/297 (0%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 R+LLAPMEG+ D L+R +LT++ YD I EFVRV + +LP K + RICPEL N S+T + Sbjct: 3 RILLAPMEGLADDLLRGVLTDIGGYDWGICEFVRVSNSVLPAKTYERICPELLNGSKTRT 62 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 GT +RVQLLG P ++AENA R V L GVDLN GCP+ TV GG+ LL +PEL+ + Sbjct: 63 GTPMRVQLLGSDPHFMAENARRLVALNPAGVDLNFGCPAPTVFRHRGGSALLGEPELLNE 122 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 A+R VPAH+P + K+RLG D + + A A++ AG EL+VHGRT+ GYR Sbjct: 123 ITSAVRSVVPAHIPFTAKMRLGIDDTSRAIDCAQALEAAGINELIVHGRTRSDGYR-PPA 181 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNE 241 W+ I +R ++IP+IANGE+W + + C +GC +M+GRGA+ P L+R V+ E Sbjct: 182 RWEWIDKVRDAIHIPLIANGEVWTVEDFRNCQLATGCADIMVGRGAVADPLLARRVR-GE 240 Query: 242 PRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLN 298 W E+ + Y ++ ++ R+KQWL+ +R+ Y EA L++ +R + Sbjct: 241 ETGGWDEIRPTVATYWLGVRKKVVPVHAGGRVKQWLAMMRRNYPEAEVLYERLRPIK 297 >UniRef50_Q14SX5 Putative dihydrouridine synthase n=6 Tax=Clostridiales RepID=Q14SX5_RUMFL Length = 332 Score = 287 bits (736), Expect = 3e-76, Method: Composition-based stats. Identities = 79/304 (25%), Positives = 134/304 (44%), Gaps = 17/304 (5%) Query: 5 LAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGTL 64 LAPM GV D R + ++E V + +C + T Sbjct: 18 LAPMAGVADRAYRLMCKRYGAA-YVVSEMVSAKGICYSDRKTAELC------TVTEEERP 70 Query: 65 VRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAK 124 + VQL G P ++AE ++ +D+N GCP V G+G G+ L+KDP L + Sbjct: 71 MAVQLFGSEPDFMAEAVKIVLDYRPDIIDINMGCPVPKVVGTGAGSALMKDPALAAAITE 130 Query: 125 AMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRAEHIDW 183 A +A PV+VK+R GW S E+A A++ +G + VHGRT++ Y + D Sbjct: 131 AAVKAAG-DTPVTVKIRSGWSSDSINAPEMARALEASGTAAIAVHGRTRDMFYSGQS-DM 188 Query: 184 QAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNEP- 242 I +++ +++PVI NG+I D +S + +GCD VMIGRG+ P + R + Sbjct: 189 NVIKAVKEAVSVPVIGNGDITDAESCAEMYGRTGCDLVMIGRGSYGNPFIFREIAARMEG 248 Query: 243 ----RMPWPEVVALLQKYTRLEKQG--DTGLYHVARIKQWLSYLRKEYDEATELFQHVRV 296 E + ++ ++ RL + ++ ++ Y + + Sbjct: 249 SEYQPPSLEEKMRVMLEHIRLIAGLSEKCEELAMHEARKHAAWYMNGYYGSAKFRGRCYQ 308 Query: 297 LNNS 300 L++ Sbjct: 309 LSSY 312 >UniRef50_Q7ZWS1 tRNA-dihydrouridine synthase 3-like n=3 Tax=Xenopus RepID=DUS3L_XENLA Length = 640 Score = 287 bits (736), Expect = 3e-76, Method: Composition-based stats. Identities = 74/321 (23%), Positives = 130/321 (40%), Gaps = 24/321 (7%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 ++ LAP+ + R + + D+ E + L E R S Sbjct: 296 KLYLAPLTTCGNLPFRRICKRLG-ADITCGEMAMCTNLLQGQP------SEWALLKRHHS 348 Query: 62 GTLVRVQLLGQFPQWLAENAARAVEL-GSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 + VQL G FP + + A VD+N GCP V GGG L+ Sbjct: 349 EDIFGVQLEGAFPDTMTKCAELLNRTIDVDFVDINVGCPIDLVYKKGGGCGLMNRTNKFE 408 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSG-EKKFEIADAVQQAGATELVVHGRTKEQGYRAE 179 Q K M + +P++VK+R G ++ ++ G + + +HGR++EQ Y + Sbjct: 409 QIVKGMNSVL--DVPLTVKIRTGVQEKVNIAHKLIPNLRDWGVSLVTLHGRSREQRY-TK 465 Query: 180 HIDWQAIGDIRQ-RLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK 238 +W+ I + +P+ NG+I ++ A + + +G VM+ RGAL P L +K Sbjct: 466 LANWEYIDQCAKIASPVPLFGNGDIISYEDANRALQ-TGVAGVMLARGALFKPWLFTEIK 524 Query: 239 Y-NEPRMPWPEVVALLQKYTR--LEKQGDT--GLYHVAR-IKQWLSYLRKEYDEATELFQ 292 + E +L+ +T LE G G+ + + +WLS+L + L Sbjct: 525 EQRHWDISSTERFDILKDFTNYGLEHWGSDCQGVEKTRKFMLEWLSFLCRYIPVG-LLEH 583 Query: 293 HVRVLNNSPDI---ARAIQAI 310 + +N P ++ + Sbjct: 584 VPQKINERPPYYMGRDYLETL 604 >UniRef50_Q2RTR9 Dihydrouridine synthase TIM-barrel protein nifR3 n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RTR9_RHORT Length = 362 Score = 287 bits (734), Expect = 5e-76, Method: Composition-based stats. Identities = 91/296 (30%), Positives = 140/296 (47%), Gaps = 14/296 (4%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 ++LAPM GV DS R L + L TE V + L + P L + Sbjct: 14 IMLAPMAGVTDSPFRRLAHDYG-CPLSWTEMVASRELLRERA--RGVDPRLGGGAEAGRA 70 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 VQL G P +AE A R G+ +D+N GCP + V G GG+ L++D L + Sbjct: 71 GPFAVQLAGCDPLIMAEAARRVEGAGAELIDINMGCPVRKVVGGLGGSALMRDLPLAARI 130 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSG-EKKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 +A+ AV LPVS+K+RLGWD E+A + AG + L VHGRT+ Q Y Sbjct: 131 LEAVVGAVT--LPVSLKMRLGWDDASRNAVELARLAESAGISRLTVHGRTRAQMYDGR-A 187 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK--- 238 DW AIG +++ +++PVIANG++ + A++ +A++G D VMIGR AL P L + Sbjct: 188 DWPAIGLVKRAVSLPVIANGDVTNLSEAREILAVTGADGVMIGRAALGAPWLPGAIARAI 247 Query: 239 ----YNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATEL 290 P E A++ + + ++ + + + + + Sbjct: 248 AAGTRETPPPALAERAAVMAAHLEGLLACHGLERGLKTSRKHMGWYARTMPQGADF 303 >UniRef50_B1GZV7 Putative tRNA-dihydrouridine synthase n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1GZV7_UNCTG Length = 320 Score = 287 bits (734), Expect = 5e-76, Method: Composition-based stats. Identities = 76/316 (24%), Positives = 126/316 (39%), Gaps = 18/316 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 ++LAPM G+ D +R L L T + + + + T Sbjct: 15 IILAPMAGITDLPLRRLAKS-GGAGLVYTGMLSARALVRSDEKTEK------LLKTTEDE 67 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 V Q+ G +AE A G+ +D+N GCP K V +G GA LL D +L+ + Sbjct: 68 RPVAAQIFGSAAHIMAEAAKIVRNSGADIIDVNLGCPVKKVAKAGAGAKLLADEKLVSEI 127 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGEKKF-EIADAVQQAGATELVVHGRTKEQGYRAEHI 181 +++ ++V +PV+VK+R G EI G + VH R QG+ Sbjct: 128 LESVVKSV--DVPVTVKIRTGLLPEHNAATEIIKVAYNCGIKMVAVHARPASQGHSGFP- 184 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY-- 239 D + IPVIANG + D ++A + + C +MIGRGAL ++ + ++ Sbjct: 185 DLKLFAASCAGAKIPVIANGGVVDEKTAADFLRVPNCAGIMIGRGALGNYSIFKRLEAFF 244 Query: 240 ----NEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVR 295 P E V L+K+ + + +K+ Y K+ A ++ Sbjct: 245 SSGKKLPLPSKTEKVEWLKKHVQYSVEYYGEKKGFVVMKKVFHYYVKDLPNAAKIRDIFN 304 Query: 296 -VLNNSPDIARAIQAI 310 + D I+ Sbjct: 305 KKIVTLSDFNELIKLF 320 >UniRef50_D1AZV6 Dihydrouridine synthase DuS n=7 Tax=Campylobacteraceae RepID=D1AZV6_SULD5 Length = 312 Score = 286 bits (733), Expect = 6e-76, Method: Composition-based stats. Identities = 78/312 (25%), Positives = 147/312 (47%), Gaps = 12/312 (3%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 + LAP+ G D R ++ + D+ +E + + + +++P Sbjct: 12 LALAPLAGFTDLPFRSVVKKFG-ADVTFSEMISANALRFKSEKTFK------MLTKSPLE 64 Query: 63 TLVRVQLLGQFPQWLAENAARAVEL-GSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 VQ++G + E ++ G G+DLNCGCP + G++LL + + + + Sbjct: 65 IPYIVQIVGSDLTSIKEAVLILNDMEGIAGIDLNCGCPVPKMVAQEAGSSLLLNLDHMQR 124 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 + ++ S KVRLG+++ + IA A + AGA + +HGRT+ Y+AE + Sbjct: 125 VIETIKTYSNKRYT-SAKVRLGFNTKIPEL-IAKACENAGADFMSMHGRTRSGAYKAE-V 181 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNE 241 D+QAI + R + IPVIANG+I + A M+++GC +MIGRGAL P + +K Sbjct: 182 DYQAIAEARAAVKIPVIANGDITSLEKALHVMSVTGCKNLMIGRGALGNPWIFYQLKNGL 241 Query: 242 PRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNNSP 301 + +++ ++ ++ + V+ ++ L K + EA+E + + + Sbjct: 242 HHVEKTKILEIVLEHYDAMVEFYGEK-GVSIFRKHLHTYSKGFREASEFRDKINRIEDKV 300 Query: 302 DIARAIQAIDIE 313 + AI + Sbjct: 301 LMREAIAHFFAQ 312 >UniRef50_Q3AZ67 Dihydrouridine synthase TIM-barrel protein nifR3 n=24 Tax=Cyanobacteria RepID=Q3AZ67_SYNS9 Length = 356 Score = 286 bits (733), Expect = 6e-76, Method: Composition-based stats. Identities = 95/313 (30%), Positives = 149/313 (47%), Gaps = 16/313 (5%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 RVL +P+ GV D + R L+ + L TE V L + Sbjct: 38 RVLQSPLAGVTDKIFRGLVRRWSRDSLLFTEMVNATSLELG-------HGYGKMDDLKAE 90 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + VQL P +A A RA + G++ +D+N GCP + + GGG+ L++DP L Q Sbjct: 91 EGPIAVQLFDHRPHAMAHAARRAEQAGAFLIDINMGCPVRKIAKKGGGSGLIRDPNLATQ 150 Query: 122 GAKAMREAVPAHLPVSVKVRLGW-DSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 +A+ +AV +PV+VK RLGW S +Q AGA L +HGRT+EQG++ + Sbjct: 151 ILEAVVDAVS--IPVTVKTRLGWCGSSSDPITWCRQLQNAGAQMLTLHGRTREQGFKGQ- 207 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 +W AI +++Q L IPVIANG+I A +C+ I+G D VM+GRG + P L ++ Sbjct: 208 ANWNAIAEVKQALTIPVIANGDINSPTDALRCLEITGADGVMVGRGTMGSPWLVGQIEAA 267 Query: 241 EPRMPWPEVVAL-LQKYTRLEKQGD----TGLYHVARIKQWLSYLRKEYDEATELFQHVR 295 P P + + E+ D G + + ++ +S+ + A +L + Sbjct: 268 FMNRPIPATPDSGARLHLAKEQLHDLVSSRGSHGLLIARKHMSWTCTGFPGAPQLRHSLM 327 Query: 296 VLNNSPDIARAIQ 308 D + I Sbjct: 328 RATTPDDAYQLID 340 >UniRef50_B9JW92 Nitrogen regulation protein n=4 Tax=Rhizobiales RepID=B9JW92_AGRVS Length = 332 Score = 285 bits (731), Expect = 1e-75, Method: Composition-based stats. Identities = 89/303 (29%), Positives = 133/303 (43%), Gaps = 15/303 (4%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 RV+LAPM GV D R+L + L +TE V + + Sbjct: 20 RVVLAPMSGVTDLPFRQLAFR-HGAGLVVTEMVASRELVFNAAESWSRLKGAGL------ 72 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 T VQL G+ P W+AE A A G+ +D+N GCP+K V G G+ L+++PE+ Sbjct: 73 -TPHMVQLAGRDPHWMAEAAKIAEANGADIIDINMGCPAKKVIGGYAGSALMREPEIALA 131 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 +A +AV +PV+VK+RLGWDS +++ Q AG + VHGRT+ Q Y Sbjct: 132 MIEATVKAVS--IPVTVKMRLGWDSDSINAPDLSRRAQDAGVQAITVHGRTRMQFYEGR- 188 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 DW AI +R + IP+IANG+I AQ+ + SG DA+M+GR P V Sbjct: 189 ADWDAIAAVRDAIYIPLIANGDIDTLGDAQEILRRSGADAIMLGRACQGRPWH-AGVLAG 247 Query: 241 EPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLR--KEYDEATELFQHVRVLN 298 E+ A+ + R V ++ + + + Sbjct: 248 HAPPSAEEIPAIAVAHYRAMLDHYGAHVGVRHARKHVGWYLERHGVQLDPAEKTGLMTSK 307 Query: 299 NSP 301 + Sbjct: 308 DPD 310 >UniRef50_A6BZR9 Predicted TIM-barrel enzyme, possibly dehydrogenase, nifR3 family protein n=1 Tax=Planctomyces maris DSM 8797 RepID=A6BZR9_9PLAN Length = 355 Score = 285 bits (730), Expect = 1e-75, Method: Composition-based stats. Identities = 87/316 (27%), Positives = 141/316 (44%), Gaps = 17/316 (5%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 R LAP+ G R + E+ LC T+ V L + + +P+ Sbjct: 24 RYFLAPLAGYTQHAFRVAIRELGGVGLCTTDLVLASHLLSGSRKSK------ALLTTSPA 77 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + +Q+ G L A + G VDLN GCP +NG+GGGA ++ P+ Q Sbjct: 78 DRPLTIQIFGGITAELVAAARWLEQHGYAAVDLNMGCPMAKINGNGGGARIMCAPDAACQ 137 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKKFE-IADAVQQAGATELVVHGRTKEQGYRAEH 180 + +AV +PV+VK+RLGWD +A +QAG + VHGRT+ QG+ Sbjct: 138 LVAEVVDAVS--IPVTVKMRLGWDRDSITAPLLAREFEQAGVAAITVHGRTRNQGF-GGT 194 Query: 181 IDWQAIGDIRQRL-NIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVV-- 237 +D Q I + + IPVI NG++ + A + +GC+AV IGRGA+ P + R + Sbjct: 195 VDLQGIRQTVEAVQQIPVIGNGDVCTVEDAFRMREQTGCEAVSIGRGAMLDPWIFRKISQ 254 Query: 238 ---KYNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHV 294 E + L+++ L + LY I+++ ++ +L + Sbjct: 255 AVRDEPVTEPTRDEQIQFLERHFSLMFE-QHELYGCRLIRKFAAWYGARLGIPEDLEDRL 313 Query: 295 RVLNNSPDIARAIQAI 310 R L + + I+ I Sbjct: 314 RRLESDEEFKDIIEQI 329 >UniRef50_Q2IG49 Dihydrouridine synthase TIM-barrel protein nifR3 n=4 Tax=Anaeromyxobacter RepID=Q2IG49_ANADE Length = 352 Score = 285 bits (729), Expect = 2e-75, Method: Composition-based stats. Identities = 89/328 (27%), Positives = 147/328 (44%), Gaps = 28/328 (8%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 R LAP+ GV D R + + TE V + R P Sbjct: 11 RYFLAPLAGVSDRPFRAICRRMG-ASFAYTEMVSAHGLMHGA------LQTSSYLDREPD 63 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 VQ+ P LA A AV+ G+ +D+N CP K V GSG GA + +DP + + Sbjct: 64 EDPFAVQIFASEPDVLARGAVVAVQAGAGMIDVNMACPVKKVCGSGAGAAMGRDPRKVEE 123 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 +A+R AVP +PV+VK+R GWD GE ++A A + GA + +HGRT+ Q Y + Sbjct: 124 AVRAIRAAVP--VPVTVKIRAGWDEGEVNCVDVARAAEAGGAAAVALHGRTRSQLYSGK- 180 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 W+ + ++Q + IPV+ +G++W A + +GCDAV++ RGA P + R +K Sbjct: 181 ARWELVRAVKQAVAIPVLGSGDVWTAGDAVRMREETGCDAVLVARGACGNPWIFRELKAI 240 Query: 241 EPRMPW------PEVVALLQKYTRLEKQGD-----------TGLYHVARIKQWLSYLRKE 283 E P E V + ++ RL+ + + + + +++ L + + Sbjct: 241 EAGRPPPPPPGRDEWVGTVLEHVRLQVEHRARMAPGEPAEASERHAIRELRKHLLWYTRG 300 Query: 284 YDEATELFQHVRVLNNSPDIARAIQAID 311 + L + D+A ++ Sbjct: 301 RRGGVHFRRDAAALVTAADVATLLERHF 328 >UniRef50_UPI00006A5AE6 PREDICTED: similar to PP3111 protein n=1 Tax=Ciona intestinalis RepID=UPI00006A5AE6 Length = 474 Score = 285 bits (729), Expect = 2e-75, Method: Composition-based stats. Identities = 75/312 (24%), Positives = 121/312 (38%), Gaps = 30/312 (9%) Query: 4 LLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGT 63 L+APM + R L + +LC T + L + + P Sbjct: 22 LVAPMVDQSELAWRMLSRKYG-AELCYTPMLHASVFL------RDPQYRIDGLASCPEDR 74 Query: 64 LVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGA 123 + VQ P L ++A A + VD+N GCP GA L ++ EL+ + Sbjct: 75 PLIVQFCANDPDILTKSALLAQD-HCDAVDINLGCPQTIAKRGNYGAFLGENWELVTKLI 133 Query: 124 KAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQ-GYRAEHID 182 KA E + +PV+ K+R+ + EK + A +++AG L VHGRTKE G Sbjct: 134 KACHEKLS--VPVTCKIRI-FTDVEKTVQYAKMIERAGCQLLTVHGRTKEMKGPMTGLAS 190 Query: 183 WQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNEP 242 W+ I ++ + IPV ANG I +C+ +G D VMI G L+ P L Sbjct: 191 WEHIKAVKDAVKIPVFANGNIQYKADVDRCINQTGVDGVMIAEGNLHDPCLF-------- 242 Query: 243 RMPWPEVVALLQKYTRLEKQG----DTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLN 298 + + +Y + + HV +I T + Sbjct: 243 VGKKTIIWEIALEYLQCAVKYPCPASYARGHVFKICHH------GLQRHTRARDLLASSK 296 Query: 299 NSPDIARAIQAI 310 + D+ A++ + Sbjct: 297 DIQDMKTAVEVL 308 >UniRef50_B3RKU4 Putative uncharacterized protein n=2 Tax=Metazoa RepID=B3RKU4_TRIAD Length = 581 Score = 285 bits (729), Expect = 2e-75, Method: Composition-based stats. Identities = 80/323 (24%), Positives = 136/323 (42%), Gaps = 22/323 (6%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 ++ LAP+ V + R + D+ +E + L + E R S Sbjct: 236 KLFLAPLTTVGNLPFRRICKTFG-ADVTCSEMALCTNLLQGQQ------SEWALVKRHES 288 Query: 62 GTLVRVQLLGQFPQWLAENAARAVEL-GSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 L +Q+ G +P LA + + VDLN GCP V G G+ L+ + Sbjct: 289 EDLFGLQVCGAWPDTLARLSEYINDRVNVDFVDLNLGCPIDLVFHQGAGSALMGRANKLQ 348 Query: 121 QGAKAMREAVPAHLPVSVKVRLGW-DSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAE 179 Q M + +P++VK+R G ++ +++ GA+ + +HGR++EQ Y + Sbjct: 349 QIVTGMSSILS--VPLTVKLRTGILAKKSTAHKLIPQIREWGASLVTLHGRSREQRY-TK 405 Query: 180 HIDWQAIGDIRQRLN-IPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK 238 DW I + + +P+I NG+I ++ + M + VMI RGAL P L +K Sbjct: 406 LADWSYINECATAADPMPLIGNGDILSFEDYLEHMNNTNVAGVMIARGALIKPWLFTEIK 465 Query: 239 Y-NEPRMPWPEVVALLQKYTR--LEKQGDT--GLYHVARI-KQWLSYLRKEYDEATELFQ 292 + E L+KY LE G G+ R +WLS+L + L + Sbjct: 466 ERRHWDISANERFEFLRKYVNYGLEHWGSDSLGVEKTRRFLLEWLSFLHRYIPIG-VLER 524 Query: 293 HVRVLNNSPDIARAIQAIDIEKL 315 + +N+ P + D+E + Sbjct: 525 VPQRINDRPPY--YVGRNDLETM 545 >UniRef50_Q6P1R4 tRNA-dihydrouridine synthase 1-like n=12 Tax=Euteleostomi RepID=DUS1L_HUMAN Length = 473 Score = 285 bits (729), Expect = 2e-75, Method: Composition-based stats. Identities = 77/313 (24%), Positives = 124/313 (39%), Gaps = 22/313 (7%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 R ++APM + R L + LC T + + E P Sbjct: 18 RHVVAPMVDQSELAWRLLSRR-HGAQLCYTPMLHAQVFVRDANYRK----ENLYCEVCPE 72 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + VQ P+ + A A + +DLN GCP GA L + +L+ + Sbjct: 73 DRPLIVQFCANDPEVFVQAALLAQD-YCDAIDLNLGCPQMIAKRGHYGAFLQDEWDLLQR 131 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQ-GYRAEH 180 E + +PV+ K+R+ + +K A +++AG L VHGRTKEQ G + Sbjct: 132 MILLAHEKLS--VPVTCKIRV-FPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGA 188 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 W+ I +R+ + IPV ANG I Q ++C+ +G VM G L+ P L Sbjct: 189 ASWEHIKAVRKAVAIPVFANGNIQCLQDVERCLRDTGVQGVMSAEGNLHNPALF------ 242 Query: 241 EPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYL-RKEYDEATELFQHVRVLNN 299 P V L ++Y + ++ L +V + L L EL + + + Sbjct: 243 --EGRSPAVWELAEEYLDIVREHPCPLSYV---RAHLFKLWHHTLQVHQELREELAKVKT 297 Query: 300 SPDIARAIQAIDI 312 IA Q + + Sbjct: 298 LEGIAAVSQELKL 310 >UniRef50_P41504 Probable tRNA-dihydrouridine synthase n=93 Tax=Alphaproteobacteria RepID=DUS_RHILP Length = 317 Score = 284 bits (727), Expect = 3e-75, Method: Composition-based stats. Identities = 86/309 (27%), Positives = 140/309 (45%), Gaps = 15/309 (4%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 RV+LAPM GV D REL L +TE V + + Sbjct: 6 RVVLAPMSGVTDMPFRELAWRFG-AGLVVTEMVASRELVNDTAESWSRLKAAGF------ 58 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 VQL G+ W+AE A A + G+ +D+N GCP+K V G G+ L++DP+ Sbjct: 59 -RPHMVQLAGREAHWMAEAAKIAADHGADIIDINMGCPAKKVIGGYSGSALMRDPDHALG 117 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 +A +AV +PV++K+RLGWD +IA + +G + +HGRT+ Q Y Sbjct: 118 LIEATVKAV--DIPVTLKMRLGWDENSINAPDIARRAEASGIQLVTIHGRTRMQFYEGR- 174 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 DW AI +R+ +++P+IANG++ AQ+ + SG DAVMIGRG P V Sbjct: 175 ADWDAIRAVREVISVPLIANGDVETAHDAQEILRRSGADAVMIGRGCQGRPWH-AGVLAG 233 Query: 241 EPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATE--LFQHVRVLN 298 ++ + ++ R+ + ++ L + + + A + Sbjct: 234 AAEPRREDIADIAVEHYRMMLDFYGEAVAIRHARKHLGWYLERFAPALAGTEKAGIMTSR 293 Query: 299 NSPDIARAI 307 + ++A + Sbjct: 294 DPREVAARL 302 >UniRef50_A4AAB0 tRNA-dihydrouridine synthase C n=6 Tax=Gammaproteobacteria RepID=A4AAB0_9GAMM Length = 328 Score = 284 bits (727), Expect = 3e-75, Method: Composition-based stats. Identities = 134/311 (43%), Positives = 195/311 (62%), Gaps = 6/311 (1%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 R+LLAPMEGV+D +R+LLT++ D C+TEFVRV +LLP +VFHR+CPEL N T S Sbjct: 8 RILLAPMEGVIDHTMRDLLTQLGGVDRCVTEFVRVSQELLPPRVFHRLCPELANGGCTSS 67 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 G V +Q+LG P +AENA+RA ELG+ GVDLN GCP+KTVN S GG+ +L++PE +++ Sbjct: 68 GVPVYLQILGGDPSVVAENASRAAELGAPGVDLNFGCPAKTVNRSDGGSIILREPERVHR 127 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 A R+A+P +P+SVK+RLG+DS ++ +I + A +ELV+H RT+ GYR Sbjct: 128 IVAATRQALPPSVPLSVKIRLGFDSSDRFLDIVSGIDAARPSELVIHARTRADGYR-PPA 186 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNE 241 W+ I R + +P+IANGEIW A+ SG +M+GRG L P+L R+++ + Sbjct: 187 YWEHIALARSKTRLPLIANGEIWGVGDAKLAREKSGTRDLMLGRGVLCRPDLPRLLRAAD 246 Query: 242 PR-----MPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRV 296 + W E+ L KY + + Y V IKQWL YLR Y +A +F ++ Sbjct: 247 SGVEVDALTWHEIRGYLLKYLAITLESYDARYAVNPIKQWLGYLRHYYPQAAAMFVVIKR 306 Query: 297 LNNSPDIARAI 307 + + ++ A+ Sbjct: 307 ILDPEELRLAL 317 >UniRef50_D0J1P6 Dihydrouridine synthase, DuS n=7 Tax=cellular organisms RepID=D0J1P6_COMTE Length = 347 Score = 284 bits (727), Expect = 3e-75, Method: Composition-based stats. Identities = 137/318 (43%), Positives = 193/318 (60%), Gaps = 9/318 (2%) Query: 1 MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTP 60 MR+LLAPMEG+LD ++R++LT V D C++EF+R+ LLP KV+ R PEL+N SRT Sbjct: 1 MRLLLAPMEGLLDFVLRDVLTRVGGADRCVSEFIRISGSLLPDKVYLRTMPELRNGSRTL 60 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 +G VR QLLG P +AENAA LG G+DLN GCP+K VN GGGA+LL+DPE I Sbjct: 61 AGVPVRAQLLGSDPVSMAENAANLARLGPEGIDLNFGCPAKVVNRHGGGASLLQDPEQIV 120 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 + A+R AVPA +PVS K+RLG++ E A A++Q GA E+VVH RTK GYR Sbjct: 121 RVVDAVRRAVPAQMPVSAKMRLGFNDRALMTECAQAMEQGGACEIVVHARTKLDGYR-PP 179 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 W+ I IR+ + + V+ANGEIW + A +C +SGCD +M+GRG + P L+ V+ Sbjct: 180 AYWEEIPRIREAVGVNVVANGEIWTVEEALRCREVSGCDDLMLGRGIVADPGLALAVRRA 239 Query: 241 EPRMPWPEVVAL--------LQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQ 292 V + +Q++ + + R+KQWL+ +R+ + EA +Q Sbjct: 240 VEHGSVSAVAGIDWLALVPQVQRFWHMVCEDLEPRQRAGRLKQWLNLMRRRFPEAELAYQ 299 Query: 293 HVRVLNNSPDIARAIQAI 310 VR + I+ +QA+ Sbjct: 300 EVRTQTDQRAISDWVQAL 317 >UniRef50_D1AWB1 Dihydrouridine synthase DuS n=12 Tax=Fusobacteriaceae RepID=D1AWB1_STRM9 Length = 305 Score = 283 bits (726), Expect = 4e-75, Method: Composition-based stats. Identities = 80/316 (25%), Positives = 146/316 (46%), Gaps = 20/316 (6%) Query: 1 MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTP 60 +++ APM GV D R+++ + D TE V V L + P++ Sbjct: 3 LKIYTAPMAGVTDYTFRKIIEDF-KPDFTFTEMVSVDKLLY------KEVPKILKLRENN 55 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 VQ+ G+ + + A +G ++LNCGCP K + SG G+ L+KDP I Sbjct: 56 -----IVQIFGKDIYLMQKAAKYIESMGVKEINLNCGCPMKKIVNSGHGSALIKDPRKIE 110 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 + A+RE + +S+K+R+G+D E EIA ++ + +++HGRT+EQ Y E Sbjct: 111 EILTALREVLDPKTALSLKIRVGYDKPENYLEIAKIAEKLKCSNIIIHGRTREQKYSGE- 169 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 DW+ I +++ +NI VI NG+I+D ++A + + + D +M+ RG L P L +K Sbjct: 170 ADWKYIKEVKDNVNIKVIGNGDIFDAKNAIEKIRETNVDGIMLARGILGNPWLISQIKEL 229 Query: 241 EPRMPWP------EVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHV 294 + + + ++ + E D I++++ + + E + Sbjct: 230 FEFGEIKTIVRDIDRINMAIRHVK-EYAIDNENVFFPDIRKYIIWYIENIKGIDETKNLI 288 Query: 295 RVLNNSPDIARAIQAI 310 +I ++ I Sbjct: 289 NQSFEYDEIIELLEKI 304 >UniRef50_Q9VPM1 CG3645, isoform A n=9 Tax=Diptera RepID=Q9VPM1_DROME Length = 505 Score = 283 bits (725), Expect = 5e-75, Method: Composition-based stats. Identities = 71/298 (23%), Positives = 118/298 (39%), Gaps = 20/298 (6%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 R ++APM + R L +LC + K P Sbjct: 29 RYVVAPMVDQSELAWRMLCRRYG-AELCYSPMYHANLFATDPKYRKDA------LQTCPE 81 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + +Q G Q + + A A + VD+N GCP G+ L + EL+ + Sbjct: 82 DRPLIIQFCGNDAQQILDAALLAQD-HCDAVDINLGCPQAIAKRGHYGSFLQDEWELLTE 140 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQ-GYRAEH 180 + + +PV+ K+R+ ++ EK A ++ AG L VHGRT+EQ G Sbjct: 141 IVSTLHAKLA--VPVTCKIRI-FEDLEKTIRYAKMLEAAGCQLLTVHGRTREQKGPLTGV 197 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 +W I ++RQ + IP++ANG I +C+ +G D VM G L+ P + + V Sbjct: 198 ANWNYIKNVRQHIKIPMLANGNILALDDVHRCLTETGVDGVMSAEGNLHNPAIFKGV--- 254 Query: 241 EPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLN 298 P V + +Y L + + L + + +EL Q++ N Sbjct: 255 -----SPPVWQMAHEYLELVQLHPCPSSFIRGHLFKLFHHIMNIRQNSELRQYLATAN 307 >UniRef50_UPI0000D52F94 Dihydrouridine synthase TIM-barrel protein nifR3 n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=UPI0000D52F94 Length = 338 Score = 283 bits (724), Expect = 7e-75, Method: Composition-based stats. Identities = 78/327 (23%), Positives = 133/327 (40%), Gaps = 27/327 (8%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 + LAPM GV D R L E D +TEF + P Sbjct: 14 IFLAPMAGVTDLAYRLLAKECG-ADFTVTEFTAASGL------TRKNTNSWLKVETDPRE 66 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 Q+ G +A+ + +D+N GCP+ V + GA LL+DP+ + Sbjct: 67 KPFIPQIFGGDISEMAKTVGMLEDRS-DVIDINFGCPAPKVCRNDAGAALLRDPDKVVSM 125 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGEKK-FEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 + E ++P++VK+RLG SG EI+ + G + VHGRT Q Y Sbjct: 126 VRRCIE--STNVPITVKMRLGTGSGPNTALEISKRLADEGVMRICVHGRTLRQRYSG-IA 182 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNE 241 DW I +I ++IPVIANG++ D +SA+ C+ + +MIGRGA+ P + +K+ Sbjct: 183 DWDQIKEISNSVDIPVIANGDVVDTKSAELCLEATNAGGLMIGRGAIGRPTIFHEIKHGM 242 Query: 242 PR----------MPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELF 291 P +Y L ++ +K+ K + A+ + Sbjct: 243 GWSHKTAPWGKGGPSRARSWCWDRYLELSQEVYGD-SGSKNLKRHAISFTKGLEGASAMR 301 Query: 292 QHVRVLNNS----PDIARAIQAIDIEK 314 + + + +++ + ++ + Sbjct: 302 VRLHSIQDKTQLGTEVSNYLHDLEETE 328 >UniRef50_C7GZ00 tRNA-dihydrouridine synthase n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7GZ00_9FIRM Length = 336 Score = 282 bits (723), Expect = 8e-75, Method: Composition-based stats. Identities = 83/323 (25%), Positives = 138/323 (42%), Gaps = 25/323 (7%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 L+AP+ G D+ VR + E L +E V + K + Sbjct: 17 FLMAPLAGFTDNAVRTIALEFG-AGLVYSEMVSAKGLIYEQKNTEE------LLDFRGAD 69 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 + +Q+ G P +A G+ VD+N GCP + + SG GA L+K P++IY Sbjct: 70 GFIAIQIFGSDPDAVAHGIQCIENKGNAIVDINMGCPMQKIVKSGSGAALMKRPDIIYDM 129 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 K + PV+ K+R+GWD+ + A A++ AGA+ + VHGRT +Q Y + Sbjct: 130 VKDAVKI--TQKPVTAKIRIGWDNNNINAVDCAKAIESAGASAVAVHGRTAKQKYEG-SV 186 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLS------- 234 + I ++Q ++IPVI NG+I + A + M +GCD VMIGRGA+ P + Sbjct: 187 NRDVIASVKQSVSIPVIGNGDIKSAKEALEFMDETGCDMVMIGRGAIGKPWIFKSCNMAL 246 Query: 235 RVVKYN-------EPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEA 287 ++ E E++ L+K L + +++ LS K Sbjct: 247 SEIRKGKSIDEITEYEPCADEILNTLKKLIDLTVSYKGEKRALLELRKKLSKYLKNTSGV 306 Query: 288 TELFQHVRVLNNSPDIARAIQAI 310 + + + ++ I Sbjct: 307 KDYRKRLYEAGTKIELMGIIYEY 329 >UniRef50_UPI000186DAF4 tRNA-dihydrouridine synthase, putative n=2 Tax=Eumetazoa RepID=UPI000186DAF4 Length = 557 Score = 282 bits (722), Expect = 1e-74, Method: Composition-based stats. Identities = 75/324 (23%), Positives = 135/324 (41%), Gaps = 23/324 (7%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 ++ L+P+ + + R + E D+ +E L +K E R S Sbjct: 210 KLYLSPLTTLGNLPFRRICKEFG-ADITCSEMAMATSLLQGLKY------EWALIKRHES 262 Query: 62 GTLVRVQLLGQFPQWLAENAARAVEL-GSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 L +QL G P + + A E +D+N GCP V GGG+ LL+ +++ Sbjct: 263 EDLFGIQLCGNNPFVMTKCAQLLEESTNVDYIDINLGCPIDLVYQKGGGSGLLRREKVLE 322 Query: 121 QGAKAMREAVPAHLPVSVKVRLG-WDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAE 179 K+M + + LP++VK R G + + +G + + VHGR++EQ Y Sbjct: 323 SVIKSMSKVMS--LPLTVKTRTGVYADKNVAHRLIPMFVDSGVSLITVHGRSREQRY-TR 379 Query: 180 HIDWQAIGDI-RQRLNIPVIANGEIWDWQSAQQCM-AISGCDAVMIGRGALNIPNLSRVV 237 DW I + + IPV NG++ ++ + + + VM+GRGAL P + + + Sbjct: 380 TADWNYINECGKAASPIPVFGNGDVLSFEDYNRALKENNNVSGVMVGRGALYKPWIFKEI 439 Query: 238 KYN-EPRMPWPEVVALLQKYTRL-EKQGDTGLYHVARIKQ----WLSYLRKEYDEATELF 291 K + E +++K+ + V ++ WLS+L + L Sbjct: 440 KEQKNWDISSSERFDIIKKFVNYGLDHWGSDTMGVELTRKFTLEWLSFLYRYIPVG-LLE 498 Query: 292 QHVRVLNNSPDIARAIQAIDIEKL 315 + + +N P + D+E L Sbjct: 499 RPPQKINERPP--KYFGRNDLETL 520 >UniRef50_C3MBL4 tRNA-dihydrouridine synthase n=1 Tax=Rhizobium sp. NGR234 RepID=C3MBL4_RHISN Length = 342 Score = 282 bits (722), Expect = 1e-74, Method: Composition-based stats. Identities = 81/284 (28%), Positives = 129/284 (45%), Gaps = 12/284 (4%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 RV LAPM GV D R L +TE V + + E + Sbjct: 27 RVALAPMSGVTDLPFRMLAWRFG-AGFVVTEMVASRELV-------GNAAESWARLKNSG 78 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 VQL G+ W+AE A G+ VD+N GCP+K V G G+ L++DP+ Sbjct: 79 IDPHIVQLAGREAHWMAEAAKIVEANGADIVDINMGCPAKKVTGGYSGSALMRDPDHALS 138 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 +A +AV +PV++K+RLGWD IA ++AG + +HGRT+ Q Y + Sbjct: 139 LIEATVKAV--RVPVTLKMRLGWDENSINAPLIARRAEEAGVQAITIHGRTRMQFYNG-N 195 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 DW AI +R ++IP+IANG++ A + + SG DAVM+GR P + + Sbjct: 196 ADWDAIRAVRDVISIPLIANGDVDTIADAMEILRRSGADAVMLGRSCQGRPWHAGALAGA 255 Query: 241 EPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEY 284 E+ A+ ++ + + ++ + + + + Sbjct: 256 ADEPAATEIAAIFVEHYAMMLDFYGPEIGLRHARKHVGWYLERF 299 >UniRef50_C7LQM9 Dihydrouridine synthase DuS n=2 Tax=Desulfovibrionales RepID=C7LQM9_DESBD Length = 324 Score = 282 bits (722), Expect = 1e-74, Method: Composition-based stats. Identities = 78/311 (25%), Positives = 142/311 (45%), Gaps = 15/311 (4%) Query: 4 LLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGT 63 LAP+ G D R L E +TE V + + + Sbjct: 14 WLAPLAGFSDLPFRLLCHEYG-CHAAVTEMVSAKGLIYDSPGTNE------LLQTCDQDS 66 Query: 64 LVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGA 123 + VQL G +L ++ R + G DLNCGCP + V +G GA LLK+PE + + A Sbjct: 67 PLVVQLFGSEEPFLVQSIERLRKAGFRYFDLNCGCPVRKVIKTGSGAALLKEPENLLKIA 126 Query: 124 KAMREAVPAHLPVSVKVRLGWDSGEK-KFEIADAVQQAGATELVVHGRTKEQGYRAEHID 182 K+M +A + K+RLGW G+ ++A +++ GA + +H R QG+ H D Sbjct: 127 KSMIDAAEPG-CMGFKIRLGWYVGQPVYLQVATKLEELGAGWVTMHPRFGAQGFTG-HAD 184 Query: 183 WQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVV----- 237 W + +++R+ +PVIA+G+++ + A +C+ + D++M RGALN P++ Sbjct: 185 WSHLKTLKERVTLPVIASGDLFHAEDAIKCIEQTSVDSIMFARGALNDPSIFTRYLQLRR 244 Query: 238 KYNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVL 297 P W ++ ++++ + L Q + +++ + K A L + + Sbjct: 245 HEEPPAKSWQQMEDMVRRLSELYPQHGMDRLGLLKMRTLVPRFLKGLPGARALRRDIVFC 304 Query: 298 NNSPDIARAIQ 308 + ++ +Q Sbjct: 305 KSWDEVFAILQ 315 >UniRef50_C8W6Y9 TIM-barrel protein, nifR3 family n=1 Tax=Atopobium parvulum DSM 20469 RepID=C8W6Y9_ATOPD Length = 363 Score = 281 bits (720), Expect = 2e-74, Method: Composition-based stats. Identities = 83/314 (26%), Positives = 125/314 (39%), Gaps = 16/314 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 VL+APM GV D + R + L +E V V + + L + Sbjct: 39 VLMAPMAGVSDGVYRTMAR-AGGAGLAYSEMVSVAGIHFGGEKTWELVEPLS------TE 91 Query: 63 TLVRVQLLGQFPQWLAENAARAVE---LGSWGVDLNCGCPSKTVNGSGGGATLLKDPELI 119 + VQL G P+ E AA+ E +D+N CP V G G+ LL PEL Sbjct: 92 PDIAVQLFGSKPEQFKEAAAQISERLGNKLALIDINMACPVPKVVKKGEGSALLDTPELA 151 Query: 120 YQGAKAMREAVPAHLPVSVKVRLGWD-SGEKKFEIADAVQQAGATELVVHGRTKEQGYRA 178 KA V +PV+VK+R G E E A A++ AGA+ + VHGR Q YR Sbjct: 152 ANLVKACLSEVT--VPVTVKIRRGRRQDEEVAPEFARAMEAAGASAIAVHGRFATQMYRG 209 Query: 179 EHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLS--RV 236 + +W+ + + ++IPVI +G++ + + +G AVMI RG P + Sbjct: 210 Q-AEWETVNRVCDAVSIPVIGSGDMLSAEDVAHALKETGVTAVMIARGTYGNPWIFKNTQ 268 Query: 237 VKYNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRV 296 P V +L + K D H+AR + ++ + A Sbjct: 269 ALLEGKTPFVPSVDQMLASFMMHVKLLDAAHIHIARARSLSTWYFRGIPNAAYWRGKSVR 328 Query: 297 LNNSPDIARAIQAI 310 + D I Sbjct: 329 CVTAQDFIDLALEI 342 >UniRef50_C0QXB6 Dihydrouridine synthase-like (DUS-like) FMN-binding domain protein n=2 Tax=Brachyspira RepID=C0QXB6_BRAHW Length = 325 Score = 280 bits (718), Expect = 4e-74, Method: Composition-based stats. Identities = 82/323 (25%), Positives = 139/323 (43%), Gaps = 23/323 (7%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 R LAPM G D + R L + L +TE V VK +R Sbjct: 15 RFFLAPMAGYTDYVFRRLSRKFG-AGLLVTELVSAAALARQVKKTYRYME------HKED 67 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + +QL G G +D+N GCP+K V + GGA LL+D + + Sbjct: 68 EYPISLQLFGANEDDYKRAIEITDLSGFSFIDINMGCPTKKVVKNNGGAGLLEDTDKMIS 127 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 A++ + LPVSVK+RLG GE + E A A+++ GA L +HGR YR Sbjct: 128 VLNAVKSV--SPLPVSVKIRLGLKRGEGGEIERALAMKENGACFLTLHGRYASDMYRGT- 184 Query: 181 IDWQAIGDIRQRL--NIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVV- 237 DW+AI I++ L + +I NG+I + A + IS D +M+GRGA+ P + + Sbjct: 185 ADWEAIAKIKEALGEDYILIGNGDIKSKEDAVKAFDISKVDGIMVGRGAIGNPWIFTELN 244 Query: 238 -------KYNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATEL 290 +YN + +++++ + + + +++++ Y ++ Sbjct: 245 TIFEDNDEYNNKIDEKDNLKNIIKEHINGCCELYGEVSGIHFMRKFIMKYLTGYRMENKI 304 Query: 291 FQHVRVLNNSPDIARAIQAIDIE 313 + N ++ + + I E Sbjct: 305 --ELMKCENKEELFKILDNIITE 325 >UniRef50_B9NQS6 NifR3 family protein n=3 Tax=Rhodobacteraceae RepID=B9NQS6_9RHOB Length = 364 Score = 280 bits (716), Expect = 7e-74, Method: Composition-based stats. Identities = 84/312 (26%), Positives = 148/312 (47%), Gaps = 17/312 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 VLLAPM G+ D R+L+ + ++E V + + + T Sbjct: 51 VLLAPMAGITDRPFRDLVMRFG-AGMVVSEMVASQEMVQAKPGVRERAELSADVENT--- 106 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 VQL G+ W+AE A + + G+ +D+N GCP+K V G+ LLK P+ Sbjct: 107 ---AVQLAGREAHWMAEAARQVADRGARVIDINMGCPAKKVTNGYSGSALLKTPDHALTL 163 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSG-EKKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 +A+ AV +PV++K RLGWD ++A Q AG + +HGRT+ Q Y+ Sbjct: 164 IEAVVAAV--DIPVTLKTRLGWDDSLLNAPDVARRAQDAGIQMVTIHGRTRCQFYKGR-A 220 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNE 241 DWQAIG +++ +++PVIANG+I +A+ + SG D VM+GRGA P L + ++ Sbjct: 221 DWQAIGAVKEAVSVPVIANGDITGPGAARTALDQSGADGVMVGRGAQGRPWLLAQICHDL 280 Query: 242 PRMPWPEV------VALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVR 295 + P++ + +++ + + + ++ L + + L + V Sbjct: 281 YGIAPPDIPTGSALIDMVRGHYQAMLAFYGTDLGLRVARKHLGWYMDDAGTPATLRRAVL 340 Query: 296 VLNNSPDIARAI 307 ++ ++ + Sbjct: 341 TSRDTGEVLHLL 352 >UniRef50_O67533 Probable tRNA-dihydrouridine synthase n=1 Tax=Aquifex aeolicus RepID=DUS_AQUAE Length = 316 Score = 279 bits (715), Expect = 8e-74, Method: Composition-based stats. Identities = 77/316 (24%), Positives = 145/316 (45%), Gaps = 13/316 (4%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 V+LAPM S R L + D TE + V L R ++ A T Sbjct: 8 VILAPMASYTHSAFRRLCRRLG-ADRTYTELISAVGVL-------RNGIPMKLAYFTEEE 59 Query: 63 TLVRVQLLGQFPQWLAEN-AARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + +Q+ G P+ +A+ A EL +D+N GC V + +L+ P L+ + Sbjct: 60 RPIHIQVFGSNPEEIAQASVVIAKELKPDFIDINFGCSVPKVLRNKAAGYMLQCPPLMGE 119 Query: 122 GAKAMREAV-PAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 K EA+ P +PVS K+RLG+ ++ I + +Q+AG + + +H RT +QG+ + Sbjct: 120 VVKETVEALKPYGIPVSAKIRLGF-EKDEVERIVEELQKAGVSLIAIHARTAKQGFSGK- 177 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY- 239 W I + ++ ++P+I +G++ W+ ++ + CD VM+GR AL+ P + + K Sbjct: 178 ALWHRIKEAKKVASVPIIGSGDVKSWRDIERMFEETECDGVMVGRAALSNPWIFKEFKEK 237 Query: 240 NEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNN 299 + + E + + + + + + A IK + + K + EL ++ N Sbjct: 238 RDIEVGLKERMDFILEELSMMTEYMSREKACAEIKSQIVQILKGVPNSRELKTYIVHAEN 297 Query: 300 SPDIARAIQAIDIEKL 315 ++ + I+ +L Sbjct: 298 CKELVKRIEEAKEREL 313 >UniRef50_Q6A959 TIM-barrel enzyme, NifR3 family n=2 Tax=Propionibacterium acnes RepID=Q6A959_PROAC Length = 411 Score = 279 bits (715), Expect = 9e-74, Method: Composition-based stats. Identities = 82/320 (25%), Positives = 141/320 (44%), Gaps = 18/320 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 V+LAPM GV ++ R+L E L + E + + H + Sbjct: 52 VVLAPMAGVTNAAFRQLCAEQG-AGLYVCEMITSRGLVYGDHKTHG------MLAFAECE 104 Query: 63 TLVRVQLLGQFPQWLAENAARAVE-LGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + VQL G P + E + E G VDLN GCP V GGG L + Sbjct: 105 DVRSVQLYGVDPGMVGEATSILCEKYGVNHVDLNFGCPVPKVTRKGGGGVLPWKLDRFAA 164 Query: 122 GAKAMREAVPAH-LPVSVKVRLGWDSGEKK-FEIADAVQQAGATELVVHGRTKEQGYRAE 179 A +A AH +PV+VK R+G D + A A +GA + +H RT + Y Sbjct: 165 VVSAAVQAGDAHGVPVTVKTRIGIDPEHITYIDSARAAVDSGAAAVCLHARTVAEAYAG- 223 Query: 180 HIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVV-- 237 H W AIG++ + +++PVI NG+IW+ A + +GC V +GRG L P L R + Sbjct: 224 HSHWDAIGELVKTVDVPVIGNGDIWEASDAMAMVGQTGCAGVEVGRGCLGRPWLFRDLAD 283 Query: 238 ----KYNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQH 293 + EV A+++++ L + ++ + +++ +++ K + E Sbjct: 284 AFAGRDTTTLPTLGEVCAMIRRHAELLVKYQG-MHGLVDMRKHMAWYLKGFPVGGETRHV 342 Query: 294 VRVLNNSPDIARAIQAIDIE 313 + +++ ++ + +D + Sbjct: 343 LGQISSFDELDSLLATLDHD 362 >UniRef50_A0EG06 Chromosome undetermined scaffold_94, whole genome shotgun sequence n=4 Tax=Intramacronucleata RepID=A0EG06_PARTE Length = 360 Score = 278 bits (713), Expect = 1e-73, Method: Composition-based stats. Identities = 76/315 (24%), Positives = 129/315 (40%), Gaps = 24/315 (7%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 + + APM + R L + L T + + K + + + P Sbjct: 19 KFICAPMVDQSELAFRMLTRKYGT-TLAYTPMLHSR-IMTESKSYKD-----EFFTTCPE 71 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + QL G PQ L + A + +D+N GCP GA LL+ E + Sbjct: 72 DRPLFAQLCGHDPQVLIKAALMIQDQ-CDAIDINLGCPQGIARKGLYGAYLLEKREQVLT 130 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYR-AEH 180 K +++ + ++PV+ K+R+ + ++ ++ +Q+AG + L VHGRTKEQ Sbjct: 131 IVKELKQNI--NVPVTCKIRM-FKDRKRTLDLTKDIQEAGCSILTVHGRTKEQNKDFVGQ 187 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 DW I +I+Q L IPV ANG I+ W ++C+ + DAVM L P L Sbjct: 188 CDWTIIAEIKQILQIPVFANGGIYTWSDVERCLQETKVDAVMSSEALLENPALFS----- 242 Query: 241 EPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRK-EYDEATELFQHVRVLNN 299 ++ L +Y + KQ + +A IK L L T+L + Sbjct: 243 ---GEIKDLNDLALEYMQFAKQYNA---RLAEIKAHLFKLLYTGLQIFTDLRSKLGSAKT 296 Query: 300 SPDIARAIQAIDIEK 314 + + + ++ Sbjct: 297 YEEHLEVVIELKNKR 311 >UniRef50_B5X496 tRNA-dihydrouridine synthase 3-like n=3 Tax=Eukaryota RepID=B5X496_SALSA Length = 654 Score = 278 bits (713), Expect = 1e-73, Method: Composition-based stats. Identities = 68/321 (21%), Positives = 126/321 (39%), Gaps = 24/321 (7%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 ++ LAP+ + R + D+ E + L E R S Sbjct: 310 KLYLAPLTTCGNLPFRRICKRFG-ADITCGEMAMCTNLLQGQ------SSEWALLKRHES 362 Query: 62 GTLVRVQLLGQFPQWLAENAARAVEL-GSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 L VQ+ G FP + A VD+N GCP V GGG L+ Sbjct: 363 EDLFGVQVEGCFPDTMTRCAELLNNKIDVDFVDINSGCPIDLVYKKGGGCGLMTRTNKFE 422 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEK-KFEIADAVQQAGATELVVHGRTKEQGYRAE 179 Q + M + +P++VK+R G ++ +++ G + + +HGR++EQ Y + Sbjct: 423 QIIRGMNSVL--DVPLTVKIRTGVQEKANIAHKLIPEMKKWGVSMITLHGRSREQRY-TK 479 Query: 180 HIDWQAIGDIRQ-RLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK 238 DW I Q IP+ NG+I + A + + +M+ RGAL P + +K Sbjct: 480 SADWDYINTCSQLASPIPLFGNGDILSYYDAMKARE-TDVSGIMLARGALIKPWVFTEIK 538 Query: 239 YNE-PRMPWPEVVALLQKYTRL-EKQGDTGLYHVARIK----QWLSYLRKEYDEATELFQ 292 + E + +L+ +T + + + + + +WLS++ + L + Sbjct: 539 ERRDWDISSSERLDVLRDFTHYGLEHWGSDTQGLEKTRNFLLEWLSFMCRYIPVG-LLER 597 Query: 293 HVRVLNNSPDI---ARAIQAI 310 + +N P ++++ Sbjct: 598 VPQKINERPPYYMGRDYLESL 618 >UniRef50_UPI00017B0A55 UPI00017B0A55 related cluster n=1 Tax=Tetraodon nigroviridis RepID=UPI00017B0A55 Length = 669 Score = 278 bits (713), Expect = 1e-73, Method: Composition-based stats. Identities = 67/321 (20%), Positives = 127/321 (39%), Gaps = 25/321 (7%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 ++ L P+ + R + D+ E + L + E R S Sbjct: 326 KLYL-PLTTCGNLPFRRVCKRFG-ADITCGEMAMCTNLLQGQQ------SEWALLKRHES 377 Query: 62 GTLVRVQLLGQFPQWLAENAARAVEL-GSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 + VQ+ G FP + A VD+N GCP V GGG L+ Sbjct: 378 EDVFGVQIEGCFPDTMTRCAELINNNTEVDFVDINSGCPIDLVFKKGGGCGLMTRTRKFE 437 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEK-KFEIADAVQQAGATELVVHGRTKEQGYRAE 179 + K M + +P++VK+R G ++ +++ G + + +HGR++EQ Y + Sbjct: 438 EIVKGMNYVL--DVPLTVKIRTGVQEKTNIAHKLIPEMKKWGVSMITLHGRSREQRY-TK 494 Query: 180 HIDWQAIGDI-RQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK 238 DW I + +P+ NG+I ++ A +G +MI RGAL P + +K Sbjct: 495 LADWDYISTCSKLASPVPLFGNGDILSYEDAM-MAKETGVSGIMIARGALIKPWIFTEIK 553 Query: 239 Y-NEPRMPWPEVVALLQKYTRL-EKQGDTGLYHVAR----IKQWLSYLRKEYDEATELFQ 292 + E + +L+ +T + + V + + +WLS++ + L + Sbjct: 554 EKRHWDISSGERLDILRDFTNFGLEHWGSDTRGVEKTRSFMLEWLSFMCRYIPVG-LLER 612 Query: 293 HVRVLNNSPDI---ARAIQAI 310 + +N P ++++ Sbjct: 613 VPQKINERPPYYLGRDYLESL 633 >UniRef50_UPI0001BCCF0E nifR3 family TIM-barrel protein n=1 Tax=Aeromicrobium marinum DSM 15272 RepID=UPI0001BCCF0E Length = 429 Score = 278 bits (712), Expect = 2e-73, Method: Composition-based stats. Identities = 81/366 (22%), Positives = 140/366 (38%), Gaps = 64/366 (17%) Query: 3 VLLAPMEGVLDSLVRELLTEVND------------------------------------- 25 V+LAPM GV ++ R+L E Sbjct: 21 VVLAPMAGVTNAAFRQLCAEQGALRGSQARTSGQALRGSQARTSGQALRGSQARTSGQAL 80 Query: 26 ----------YDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGTLVRVQLLGQFPQ 75 L + E + + + L + P+ + VQL G P Sbjct: 81 RGSQARTSGQAGLYVCEMITSRGVVEGDRT------SLGMLTFAPNERVRSVQLYGIDPA 134 Query: 76 WLAENAARAV-ELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGA-KAMREAVPAH 133 + A + G VDLN GCP V GGGA L L+ + +A+ A P Sbjct: 135 TVGRAVAILCGDHGVDHVDLNFGCPVPKVTRKGGGAALPWKATLLGRILTEAVAAAAPFG 194 Query: 134 LPVSVKVRLGWDSGEKK-FEIADAVQQAGATELVVHGRTKEQGYRAEHIDWQAIGDIRQR 192 +PV++K R G D + + +G + +HGRT Q Y E DW AI ++ Sbjct: 195 VPVTMKTRKGIDDDHLTYLDAGHIAEDSGCAAIALHGRTAVQHYSGE-ADWAAIAALKAA 253 Query: 193 LNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNEPR-------MP 245 ++IPV+ NG++W+ A + + +GCD V++GRG L P L R + Sbjct: 254 VSIPVLGNGDVWEAADALRMVRETGCDGVVVGRGCLGRPWLFRDLAAAFTGEETVPALPT 313 Query: 246 WPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNNSPDIAR 305 EV+A+++++ L ++ +++ K + + Q + +++ + Sbjct: 314 LGEVMAIMRRHAELLGGWLGEERGCVEFRKHVAWYLKGFPAGPSVRQRLGQVSSYAALDE 373 Query: 306 AIQAID 311 + +D Sbjct: 374 LLVELD 379 >UniRef50_A6W1E8 Dihydrouridine synthase DuS n=1 Tax=Marinomonas sp. MWYL1 RepID=A6W1E8_MARMS Length = 335 Score = 278 bits (712), Expect = 2e-73, Method: Composition-based stats. Identities = 108/310 (34%), Positives = 175/310 (56%), Gaps = 5/310 (1%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 + +APMEGV+D +R LL++ D ++EF+RV +P F + PE N +RT Sbjct: 21 LAVAPMEGVMDHTMRALLSQTGGMDYLVSEFIRVTQYPIPAATFKHLVPENTNKARTTHN 80 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 V QLLG + +AE+A A + G+ +D+N GCP+K VNG GGG+ LL+ P+ +Y Sbjct: 81 HPVHTQLLGSNAELMAESALNATKAGAKHIDVNFGCPAKRVNGHGGGSVLLQTPDALYDI 140 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHID 182 A+R+ +P+ +PVS K+RLG++ F+ A++ AG L +HGRTK+ GY+ Sbjct: 141 MSAIRDTLPSDIPVSAKIRLGFEDEALLFDNVAAIEAAGVGTLTIHGRTKKDGYK-PPAR 199 Query: 183 WQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK---- 238 W+ IG+I+ + + V+ANG+I D +S +C +I+GC MIGRG+LN P + + ++ Sbjct: 200 WEKIGEIQAKTKMTVVANGDITDTKSLLRCQSITGCQHFMIGRGSLNNPFVFQQIRKELN 259 Query: 239 YNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLN 298 E + L Y+R ++ + + R+KQW +LR E+ E E Q +R Sbjct: 260 GQESTADTTNLNRLFISYSRELQEHYDEVAALGRLKQWCGHLRFEFKEIKENLQTLRRCK 319 Query: 299 NSPDIARAIQ 308 + ++ Sbjct: 320 SVNELISTFN 329 >UniRef50_Q96G46 tRNA-dihydrouridine synthase 3-like n=17 Tax=Coelomata RepID=DUS3L_HUMAN Length = 650 Score = 278 bits (712), Expect = 2e-73, Method: Composition-based stats. Identities = 77/321 (23%), Positives = 130/321 (40%), Gaps = 24/321 (7%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 ++ LAP+ + R + D+ E + L E R Sbjct: 306 KLYLAPLTTCGNLPFRRICKRFG-ADVTCGEMAVCTNLLQGQ------MSEWALLKRHQC 358 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELG-SWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 + VQL G FP + + A VD+N GCP V GGG L+ Sbjct: 359 EDIFGVQLEGAFPDTMTKCAELLSRTVEVDFVDINVGCPIDLVYKKGGGCALMNRSTKFQ 418 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEK-KFEIADAVQQAGATELVVHGRTKEQGYRAE 179 Q + M + + +P++VK+R G + ++ G + +HGR++EQ Y + Sbjct: 419 QIVRGMNQVL--DVPLTVKIRTGVQERVNLAHRLLPELRDWGVALVTLHGRSREQRY-TK 475 Query: 180 HIDWQAIGDIRQRLN-IPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK 238 DWQ I + Q + +P+ NG+I ++ A + M +G +MI RGAL P L +K Sbjct: 476 LADWQYIEECVQAASPMPLFGNGDILSFEDANRAMQ-TGVTGIMIARGALLKPWLFTEIK 534 Query: 239 Y-NEPRMPWPEVVALLQKYTR--LEKQGDT--GLYHVARI-KQWLSYLRKEYDEATELFQ 292 + E + +L+ +T LE G G+ R +WLS+L + L + Sbjct: 535 EQRHWDISSSERLDILRDFTNYGLEHWGSDTQGVEKTRRFLLEWLSFLCRYVPVG-LLER 593 Query: 293 HVRVLNNSPDI---ARAIQAI 310 + +N P ++ + Sbjct: 594 LPQRINERPPYYLGRDYLETL 614 >UniRef50_P53759 tRNA-dihydrouridine synthase 1 n=19 Tax=Ascomycota RepID=DUS1_YEAST Length = 423 Score = 278 bits (711), Expect = 2e-73, Method: Composition-based stats. Identities = 75/325 (23%), Positives = 128/325 (39%), Gaps = 23/325 (7%) Query: 4 LLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGT 63 ++APM + R L L T + K + + Sbjct: 32 IVAPMVDQSELAWRILSRRYG-ATLAYTPMLHAKLFATSKKYREDN---WSSLDGSSVDR 87 Query: 64 LVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGA 123 + VQ P++L AA+ VE VDLN GCP G+ L+++ +LI+ Sbjct: 88 PLVVQFCANDPEYLL-AAAKLVEDKCDAVDLNLGCPQGIAKKGHYGSFLMEEWDLIHNLI 146 Query: 124 KAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQ-GYRAEHID 182 + + + +PV+ K+R+ +D EK A V AGA L VHGR +EQ G + + Sbjct: 147 NTLHKNLK--VPVTAKIRI-FDDCEKSLNYAKMVLDAGAQFLTVHGRVREQKGQKTGLAN 203 Query: 183 WQAIGDIRQRLN--IPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 W+ I +R L ANG I + +CM G DAVM G L P + V + Sbjct: 204 WETIKYLRDNLPKETVFFANGNILYPEDISRCMEHIGADAVMSAEGNLYNPGVFNVGQTK 263 Query: 241 EPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRK-EYDEATELFQHVRVLN- 298 +P V ++++Y ++ K+ +K + + T++ + +N Sbjct: 264 NKEKIFPRVDKIIREYFQIVKECQESKASKTAMKSHFFKILRPFLPHHTDIRSTLATMNA 323 Query: 299 --NSPD--------IARAIQAIDIE 313 + + + +Q I + Sbjct: 324 KATWEEWEEQVVKPVEKVVQEIFEQ 348 >UniRef50_A9BIR6 Dihydrouridine synthase DuS n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BIR6_PETMO Length = 301 Score = 278 bits (711), Expect = 2e-73, Method: Composition-based stats. Identities = 76/307 (24%), Positives = 141/307 (45%), Gaps = 17/307 (5%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 ++ LAPM D RE+ TE + V + + ++ P+ Sbjct: 5 QIGLAPMADYTDYPFREICRRFG-AKFTFTEMISVDSIIRENEKVEKMLPQ-------KG 56 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + VQL G E A L + +D+N CP V G GA LLK+P+L+ Sbjct: 57 EDNIGVQLFGNETTKFIEAAKSIQHL-ASWIDINAACPVNKVVKKGSGAALLKNPKLLGD 115 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 +++++ LPV VKVRLG+D E+A+ V++AGA ++VHGRT+ Q Y Sbjct: 116 IVFNLKKSI--DLPVGVKVRLGYDQI-NIEEVAETVEKAGADYIIVHGRTRSQMYSG-IA 171 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNE 241 + + + ++ ++ IP+ A+G+++ + + G D V++ RGA+ P + N Sbjct: 172 NREILKKLKAKITIPLGASGDVFSKKDIDDYLLNYGADFVLVARGAIGNPWIFTK---NN 228 Query: 242 PRMPWPEVVALLQKYTRLEKQGDT-GLYHVARIKQWLSYLRKEYDEATELFQHVRVLNNS 300 E + ++ +L + +Y V + ++ L + A E+ +++ +L + Sbjct: 229 YNPTIDERIDTCLEHLKLMIEFYGSEVYAVKKFRKVLMKYFSGIEGAKEIRRNLDLLLSY 288 Query: 301 PDIARAI 307 D+A + Sbjct: 289 NDVAEMV 295 >UniRef50_Q54CU9 tRNA-dihydrouridine synthase 3-like n=1 Tax=Dictyostelium discoideum RepID=DUS3L_DICDI Length = 671 Score = 278 bits (711), Expect = 2e-73, Method: Composition-based stats. Identities = 73/322 (22%), Positives = 133/322 (41%), Gaps = 22/322 (6%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 +++LAP+ V + R + + D+ I E L K EL R P Sbjct: 325 QLILAPLTTVGNLPFRRICKRLG-ADITIGEMALTTKLLEGTK------SELALLKRHPC 377 Query: 62 GTLVRVQLLGQFPQWLAENAARAV-ELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 VQ+ G + + A E+ + VD+N GCP V G GA L++ P+ + Sbjct: 378 EDKFGVQICGSYVDAAVKCAEFIENEIDADFVDINSGCPIDLVCNMGAGAALMERPKKVE 437 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKK-FEIADAVQQAGATELVVHGRTKEQGYRAE 179 Q + + ++ P ++K+R+G ++ ++ + GA + +HGR++ Q Y Sbjct: 438 QLLRGISSSLSC--PTTIKIRIGKSEDAPTAHKLIPSLGEWGACAVTLHGRSRAQRYS-R 494 Query: 180 HIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY 239 +W + + +IP+I NG+I+++Q S ++MI RGAL P + +K Sbjct: 495 LANWDYVKQCSEVSSIPLIGNGDIYNYQDVVNIYDSSKVSSIMIARGALIKPWIFTEIKE 554 Query: 240 -NEPRMPWPEVVALLQKYTRL-EKQGDTGLYHVARIKQ----WLSYLRKEYDEATELFQH 293 E + E + ++ + + V ++ WLS+ + L Sbjct: 555 KREWDISASERLDFIRDFANYGLDHWGSDRIGVDNTRKFLLNWLSFSHRYIPVG--LLDK 612 Query: 294 VRVLNNSPDIARAIQAIDIEKL 315 V +N P D+E L Sbjct: 613 VHYMNERPP--AYFGRSDLETL 632 >UniRef50_D1U4K9 Dihydrouridine synthase DuS n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U4K9_9DELT Length = 339 Score = 277 bits (710), Expect = 3e-73, Method: Composition-based stats. Identities = 77/316 (24%), Positives = 134/316 (42%), Gaps = 17/316 (5%) Query: 4 LLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGT 63 LAP+ G D R L+ + + +E V V + R + P Sbjct: 12 WLAPLAGYSDLPFRLLVKR-HGCAVACSEMVSVKGMTFGNEGTQR------LIATCPEDD 64 Query: 64 LVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGA 123 + +QL G P V+LG DLN GCP + V SG G L++DP+ + + A Sbjct: 65 PMVLQLFGADPDLFGPVMDWLVDLGYRNFDLNAGCPVRKVLKSGSGVKLMEDPDTLVRIA 124 Query: 124 KAMREAVPAHLP---VSVKVRLGWDS-GEKKFEIADAVQQAGATELVVHGRTKEQGYRAE 179 M E AH V VK RLG+D + E+A ++ AG + +H R Q + + Sbjct: 125 SVMVERATAHARGGQVGVKFRLGFDKGNDTYLELARRLEDAGVHWVTLHPRYGRQMFAGQ 184 Query: 180 HIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK- 238 DW +G +++ ++IPV+A+G+++ + +C+ +G DAVM RGAL P + + Sbjct: 185 -ADWSKLGLLKRAVSIPVVASGDLFTAEDGVRCVEETGVDAVMFARGALYDPAIFDRYRT 243 Query: 239 ----YNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHV 294 + +++++ RL ++ + +I+ + K L + Sbjct: 244 LLAGGQPEPRSGESLARIVREHIRLTREFEGDGRSFRKIRSIIPRYAKGLRGIRALRGSL 303 Query: 295 RVLNNSPDIARAIQAI 310 + + A I Sbjct: 304 LECRDWEALEEAAATI 319 >UniRef50_A8N483 Putative uncharacterized protein n=2 Tax=Agaricales RepID=A8N483_COPC7 Length = 561 Score = 277 bits (710), Expect = 3e-73, Method: Composition-based stats. Identities = 78/307 (25%), Positives = 119/307 (38%), Gaps = 17/307 (5%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLP-VKVFHRICPELQNASRTP 60 + ++APM + R L + L T + P K + ++ + Sbjct: 35 KYIVAPMVDQSELAFRRLCRQYG-AQLIYTPMINAKMFTDPVNKSYRASAFDIASGEEGD 93 Query: 61 --SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPEL 118 S + VQ P L ++A VE VD+N GCP G+ L D L Sbjct: 94 MASDRPLIVQFCANDPDQLLQSAK-VVEKYCDAVDINLGCPQDIAKRGRYGSFLQDDWPL 152 Query: 119 IYQGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQ-GYR 177 IY + V +PV+ K R+ + EK E A +++AGA L HGR +EQ G Sbjct: 153 IYSMINTLH--VNLSIPVTAKFRV-FPDVEKTVEYAKMLERAGAQILTCHGRIREQRGQN 209 Query: 178 AEHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVV 237 DW I +++ + +PV ANG I +C+ +GCD VM G L P L + Sbjct: 210 TGLADWSKIRAVKEAVKVPVFANGNILFQDDIARCLEETGCDGVMSAEGILYNPALFYGL 269 Query: 238 KYNEPRMPWPEVVALLQKYTRLEKQGDT------GLYHVARIKQWLSYLRK-EYDEATEL 290 P P L +T L Q + V+ +K L L + +L Sbjct: 270 DA-PSSSPKPPTTDLYPMHTTLASQYLSIVLSLKTKTPVSAVKGHLFKLMRPALTRELDL 328 Query: 291 FQHVRVL 297 + + Sbjct: 329 RERLGRT 335 >UniRef50_C5CI99 Dihydrouridine synthase DuS n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CI99_KOSOT Length = 314 Score = 277 bits (708), Expect = 6e-73, Method: Composition-based stats. Identities = 80/311 (25%), Positives = 134/311 (43%), Gaps = 24/311 (7%) Query: 5 LAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGTL 64 LAPM G D +R + E D +E + V L + +I P T Sbjct: 8 LAPMAGYTDEAMRAISLEWG-ADFVFSEMLSVEGVLRNDRTTQKIIP----------ETP 56 Query: 65 VRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAK 124 R+QL G LA A ++ + D+N GCP K V G GA LL++PE + + Sbjct: 57 CRIQLFGNDIARLAMAAKAVLDK-ATWFDINAGCPVKKVVKRGAGAALLREPEKLNAMIQ 115 Query: 125 AMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHIDWQ 184 ++ + LPVSVK+RLGWD E +I + + ++ ++VHGRT QGY DW+ Sbjct: 116 TLKGI--SDLPVSVKIRLGWDKNEV-VKIVERLVESRPFAIMVHGRTVVQGYSG-VADWE 171 Query: 185 AIGDIRQRLN---IPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY-- 239 +IG + + I V +G+++ + + G D V++ RGA+ P + K Sbjct: 172 SIGKVVKICKPHGIKVYGSGDVFSPEKIVEAFEKYGVDGVLVARGAIGNPWIFSQYKELK 231 Query: 240 ---NEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRV 296 + E + + K+ + + + ++ K AT++ + Sbjct: 232 QKGSYTVPDPHERLKVFAKHLKKLIELKGEERAIIESRKHFVGYCKGLLNATKMRREYMK 291 Query: 297 LNNSPDIARAI 307 L N D+ + Sbjct: 292 LKNKTDVENFL 302 >UniRef50_Q91XI1 tRNA-dihydrouridine synthase 3-like n=12 Tax=Chordata RepID=DUS3L_MOUSE Length = 637 Score = 276 bits (707), Expect = 6e-73, Method: Composition-based stats. Identities = 73/321 (22%), Positives = 124/321 (38%), Gaps = 24/321 (7%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 ++ LAP+ + R + D+ E + L E R P Sbjct: 293 KLYLAPLTTCGNLPFRRICKRFG-ADVTCGEMAVCTNLLQGQ------MSEWALLKRHPC 345 Query: 62 GTLVRVQLLGQFPQWLAENAARAVEL-GSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 + VQL G FP + + A VD+N GCP V GGG L+ Sbjct: 346 EDIFGVQLEGAFPDTMTKCAELLNRTIDVDFVDINVGCPIDLVYKKGGGCALMNRSAKFQ 405 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDS-GEKKFEIADAVQQAGATELVVHGRTKEQGYRAE 179 Q + + + +P++VK+R G + ++ G + +HGR++EQ Y Sbjct: 406 QIVRGVNGVL--DVPLTVKMRTGVQERVSLAHRLLPELRDWGVALVTLHGRSREQRY-TR 462 Query: 180 HIDWQAIGDIRQ-RLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK 238 DW I + +P+ NG+I ++ A C +G +M+ RGAL P L +K Sbjct: 463 LADWPYIEQCAKVASPMPLFGNGDILSFEDA-NCAMQTGVAGIMVARGALLKPWLFTEIK 521 Query: 239 Y-NEPRMPWPEVVALLQK--YTRLEKQGDT--GLYHVARI-KQWLSYLRKEYDEATELFQ 292 + E + +L+ + LE G G+ R +WLS+L + L + Sbjct: 522 EQRHWDISSSERLDILRDFTHYGLEHWGSDTQGVERTRRFLLEWLSFLCRYVPVG-LLER 580 Query: 293 HVRVLNNSPDI---ARAIQAI 310 + +N P ++ + Sbjct: 581 PPQRINERPPYYLGRDYLETL 601 >UniRef50_O53835 Probable tRNA-dihydrouridine synthase n=107 Tax=Actinobacteria (class) RepID=DUS_MYCTU Length = 389 Score = 276 bits (706), Expect = 8e-73, Method: Composition-based stats. Identities = 79/325 (24%), Positives = 133/325 (40%), Gaps = 23/325 (7%) Query: 3 VLLAPMEGVLDSLVRELLTEV-----NDY-DLCITEFVRVVDQLLPVKVFHRICPELQNA 56 V+LAPM GV + R L ++ L + E V + R + Sbjct: 24 VVLAPMAGVTNVAFRALCRQLEQSKVGTVSGLYVCEMVTARALI------ERHPVTMHMT 77 Query: 57 SRTPSGTLVRVQLLGQFPQWLAENAARAVELG-SWGVDLNCGCPSKTVNGSGGGATLLKD 115 + + + +QL P A G + +D+N GCP V GGGA L Sbjct: 78 TFSADESPRSLQLYTVDPDTTYAAARMIAGEGLADHIDMNFGCPVPKVTKRGGGAALPFK 137 Query: 116 PELIYQGAKA-MREAVPAHLPVSVKVRLGWDSGEKKF-EIADAVQQAGATELVVHGRTKE 173 L Q A +R +PV+VK R+G D + + GA + +H RT Sbjct: 138 RRLFGQIVAAAVRATEGTDIPVTVKFRIGIDDAHHTHLDAGRIAEAEGAAAVALHARTAA 197 Query: 174 QGYRAEHIDWQAIGDIRQRLN-IPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPN 232 Q Y DW+ I ++Q + IPV+ NG+I+D A M+ +GCD V+IGRG L P Sbjct: 198 QRYSGT-ADWEQIARLKQHVRTIPVLGNGDIYDAGDALAMMSTTGCDGVVIGRGCLGRPW 256 Query: 233 LSRVVKYNEPRMPWP------EVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDE 286 L + P P EV +++++ L + I++ +++ + Sbjct: 257 LFAELSAAFTGSPAPTPPTLGEVADIIRRHGTLLAAHFGEDKGMRDIRKHIAWYLHGFPA 316 Query: 287 ATELFQHVRVLNNSPDIARAIQAID 311 + L + + ++ ++ + +D Sbjct: 317 GSALRRALAMVKTFDELDCLLDRLD 341 >UniRef50_Q9ZLB6 Probable tRNA-dihydrouridine synthase n=23 Tax=Epsilonproteobacteria RepID=DUS_HELPJ Length = 328 Score = 276 bits (706), Expect = 8e-73, Method: Composition-based stats. Identities = 81/314 (25%), Positives = 138/314 (43%), Gaps = 11/314 (3%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 + LAP+ G D R ++ + D+ +E V + + ++P Sbjct: 9 LFLAPLAGYTDLPFRSVVKKFG-VDVTTSEMVSSHSLVYA------FDKTSKMLEKSPLE 61 Query: 63 TLVRVQLLGQFPQWLAENAARAVELG-SWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 Q+ G + E + L G+D NCGCP+ V G G+ LLKD + + Sbjct: 62 DHFMAQISGSKESVVKEAVEKINALDHVSGIDFNCGCPAPKVANHGNGSGLLKDLNHLVE 121 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 K +RE + SVKVRLG++ EIA A+ A +VVHGRT+ Y+ + I Sbjct: 122 ILKVIRENTNKKIT-SVKVRLGFEKKIP-KEIAHALNDAPVDYVVVHGRTRSDRYQKDKI 179 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNE 241 D+++I +++ L PVIANGEI + A + + I+ D +MIGR L P + ++ N Sbjct: 180 DYESIALMKKILKKPVIANGEIDSVKKAFEVLQITQADGLMIGRATLRAPWIFWQIRNNT 239 Query: 242 PRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNNSP 301 +P L+ ++ + V ++ L K +A+ V L Sbjct: 240 TELPAVVKKDLVLEHFDKMVEFYGDR-GVIMFRKNLHAYAKGEMQASAFRNCVNTLTEIK 298 Query: 302 DIARAIQAIDIEKL 315 + +I+ +++ Sbjct: 299 SMRESIEEFFNQEM 312 >UniRef50_A0Z0J5 TRNA-dihydrouridine synthase B n=2 Tax=unclassified Gammaproteobacteria (miscellaneous) RepID=A0Z0J5_9GAMM Length = 352 Score = 275 bits (705), Expect = 1e-72, Method: Composition-based stats. Identities = 84/321 (26%), Positives = 139/321 (43%), Gaps = 21/321 (6%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 V LAPM GV D +REL E+ + + E + +LL + + G Sbjct: 26 VALAPMAGVTDLPMRELCVELG-AGMAVAEMLTSDPKLLASRK------SSLRRRHSAKG 78 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 L VQ++G PQ LA A + G+ +D+N GCP+K V G+ LL D + + + Sbjct: 79 GLRSVQIVGSEPQQLANAARLNADDGADVIDINMGCPAKKVCKKAAGSALLADEDRVAEI 138 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGEKK-FEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 KA+ AV +PV++K+R G ++ IA + AG L VHGRT+ ++ E Sbjct: 139 LKAVVSAV--DVPVTLKIRTGVSPQQRNGVAIAKIAEDAGIQLLTVHGRTRADRFKGE-A 195 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY-- 239 ++ I I ++IPV+ANG+I A + +G +MIGR AL P L + Sbjct: 196 EYHTIERIVDAVSIPVLANGDITTPAQALAVLQKTGAAGIMIGRAALGRPWLPGAIAQSL 255 Query: 240 ---NEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDE-----ATELF 291 P E ++ + V ++ + + + TE Sbjct: 256 AGLRTPLPSLAERFLQMRCHLTALHDFHGDFMGVRIARKHVGWFIDAIENDVASSFTEWK 315 Query: 292 QHVRVLNNSPDIARAIQAIDI 312 +H L ++ +Q +++ Sbjct: 316 RHFNALQDADAQQTLLQTLEL 336 >UniRef50_A9GW95 Dihydrouridine synthase TIM-barrel protein nifR3 n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GW95_SORC5 Length = 328 Score = 275 bits (704), Expect = 1e-72, Method: Composition-based stats. Identities = 89/314 (28%), Positives = 147/314 (46%), Gaps = 18/314 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 V+LAPME V D++ R + E+ +LC+TEFV V L K R + Sbjct: 17 VVLAPMEDVTDAVFRRIGRELG-AELCVTEFVNVEGLLRGCKTARRK------LALADGD 69 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 +Q+ G P+ LAE A A E G +D+NCGC + G G GA L+DPE + Sbjct: 70 QPTAIQIYGANPERLAEAARVAEEAGPAFLDINCGCWVPKIAGRGAGAGWLRDPEAMVAM 129 Query: 123 AKAMREAVPAHLPVSVKVRLGW--DSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 A+ + +V LPV+VK R+GW +S ++A ++ AG L +H RT + G+ Sbjct: 130 ARLVTRSVA--LPVTVKTRIGWGPESHMPIVDLARRLEDAGVAALTIHCRTAQMGHSG-A 186 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY- 239 DW R+ ++IPV+ NG+I A + + +GC VM+GR A++ P + R + Sbjct: 187 ADWGWAARAREVVSIPVVVNGDIKTADDAARALRETGCAGVMVGRAAIDHPWIFREARAL 246 Query: 240 -----NEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHV 294 + P E +AL + + + + V ++ L+ + A+ L + + Sbjct: 247 LDDGVHLPPPTAEERLALCRAHLIANTEARGEPHGVRVTRRHLTGYLRGLPGASALRREL 306 Query: 295 RVLNNSPDIARAIQ 308 ++ + Sbjct: 307 LFCDSLSGCLDILD 320 >UniRef50_C4VA23 Putative uncharacterized protein n=1 Tax=Nosema ceranae BRL01 RepID=C4VA23_NOSCE Length = 327 Score = 275 bits (704), Expect = 1e-72, Method: Composition-based stats. Identities = 72/311 (23%), Positives = 126/311 (40%), Gaps = 19/311 (6%) Query: 4 LLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGT 63 +LAPM G + R L D+C TE V + + + Sbjct: 13 VLAPMVGNSELAWRILARRYG-ADICYTEMVNCDTFIRS----KINPLSNRWYTTNKIDR 67 Query: 64 LVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGA 123 + +Q+ G + + + E +D+N GCP + G+ L+ D + + Sbjct: 68 PLIIQICGNDVNKMLKVSLILQE-YCDAIDINLGCPQEIARKGNYGSFLMDDLLKVKEIV 126 Query: 124 KAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQ-GYRAEHID 182 + + +PV+ K+R+ ++S EK E A ++QAG L VHGRT++Q G Sbjct: 127 TVLSNNLK--VPVTCKIRI-FESIEKSVEYAKMIEQAGCKMLTVHGRTRDQRGLNTGLAS 183 Query: 183 WQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNEP 242 W I I+ LNIPVI+NG I + C+ + CD VM+ L P + +K + Sbjct: 184 WDHIRAIKASLNIPVISNGNIINNSDIDNCVEYTKCDGVMVAETHLYNPLIF--IKRHSK 241 Query: 243 RMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLR-KEYDEATELFQHVRVLNNSP 301 +++ ++Y + + Y + IK L K + E +H+ + Sbjct: 242 TN-----ISIYKEYLNIFLENYNE-YDIHTIKSHTFKLLKKFLKQYPEFSEHINLCKTLK 295 Query: 302 DIARAIQAIDI 312 D ++ Sbjct: 296 DYINLCDVLET 306 >UniRef50_A5EVV4 Dihydrouridine synthase n=2 Tax=Cardiobacteriaceae RepID=A5EVV4_DICNV Length = 318 Score = 275 bits (704), Expect = 2e-72, Method: Composition-based stats. Identities = 78/311 (25%), Positives = 124/311 (39%), Gaps = 14/311 (4%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 VLLAPM G+ D R L + I E V Q L + +A Sbjct: 14 VLLAPMAGISDLPYRSLCQRFGSH-YTIAEMVDARPQFLAMPESQLRLQFDDDARF---- 68 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 VQL+G P +AE A LG +D+N GCP+K V G+ LL D + + Sbjct: 69 -PKIVQLVGGDPYLMAETAQVMQALGCDVIDINMGCPAKKVGKQNAGSALLSDLPQVEKI 127 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGEKKFE-IADAVQQAGATELVVHGRTKEQGYRAEHI 181 + V +PV++K RLG++ E +A + G L VHGRT+ Q + Sbjct: 128 LAQVTRVVS--IPVTLKTRLGFNEQTMTIETVAKIAENTGVAALTVHGRTRAQRFNGT-A 184 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN- 240 + IG ++ + ++P+I NG+I AQ + G D VMIGR A P L ++ Sbjct: 185 HYDEIGRVKAQTSLPIIVNGDITTTAQAQDLIQQFGFDGVMIGRAACGNPWLLAHMRCAL 244 Query: 241 --EPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLN 298 + +P A++ ++ Q + ++ L + Q + Sbjct: 245 DCDFALPAISRRAVISEHISALHQLY-QRQGLLIARKHLHWYLAPMPRYDFWRQEINTAT 303 Query: 299 NSPDIARAIQA 309 + + Sbjct: 304 DLAAQLAIVAQ 314 >UniRef50_B9ZKT6 TIM-barrel protein, nifR3 family n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZKT6_9GAMM Length = 330 Score = 275 bits (704), Expect = 2e-72, Method: Composition-based stats. Identities = 91/289 (31%), Positives = 138/289 (47%), Gaps = 17/289 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 V LAPM GV D +R + + ++E V +L Sbjct: 13 VFLAPMAGVSDRPLRLIARRLG-ASAAVSEMVTSDTRLWGSDKSR------HRLDHRQEP 65 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 VQLLG P+ LAE A V G+ +DLN GCP+K V G+ LL +PE + + Sbjct: 66 RPRIVQLLGNEPEPLAEAARENVRRGADVIDLNLGCPAKKVCSKAAGSALLGEPERVREL 125 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGEKKFE-IADAVQQAGATELVVHGRTKEQGYRAEHI 181 A+ E+V +PV++K+RLG D E IA Q G L VHGRT+ YR Sbjct: 126 LTALVESV--EVPVTLKMRLGLDRERVNAETIAGIAQDCGIAMLTVHGRTRADAYRGT-A 182 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNE 241 D++AI + + ++IPV+ANG++ D SA++ +AISG +MIGRGA P L ++ + Sbjct: 183 DYEAIARVVRAVSIPVLANGDVVDIGSARRALAISGATGLMIGRGAQGRPWLPGQIRASL 242 Query: 242 PRMP------WPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEY 284 P W +AL++++ R + V ++ L + + Sbjct: 243 AGEPVPADPAWDARLALIEEHLRALHAQYGEMQGVRIARKHLGWYLQHM 291 >UniRef50_UPI000180C543 PREDICTED: similar to dihydrouridine synthase 1-like n=2 Tax=Eumetazoa RepID=UPI000180C543 Length = 626 Score = 274 bits (702), Expect = 2e-72, Method: Composition-based stats. Identities = 68/306 (22%), Positives = 125/306 (40%), Gaps = 20/306 (6%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 + ++APM + R L + LC + + +++ +L + Sbjct: 16 KFVVAPMVDQSELPWRLLSRR-HGAQLCFSPMYSANTFVHDHTYRNKVVQDLS----STE 70 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + VQ + E A++ VE GVDLN GCP GA L +D +LI + Sbjct: 71 DHPLIVQFCSNSAENFLE-ASKLVEGLCEGVDLNLGCPQHIAKRGHFGAYLQEDWDLIIE 129 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQ-GYRAEH 180 ++ + V+ K+R+ ++ +K + A ++ AG + VHGRT+EQ G Sbjct: 130 IISTTKQHIGIG--VTAKIRV-FNEIDKTVKYAQMLETAGCDIITVHGRTREQKGPNTGL 186 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 W I ++ ++IPV ANG I + +CM +G D VM+ G L P + + + Sbjct: 187 ASWDHIKAVKDNVDIPVFANGNIQYYCDIMRCMETTGVDGVMVAEGNLTNPMIFQDL--- 243 Query: 241 EPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYL-RKEYDEATELFQHVRVLNN 299 V ++++Y L Q L + + + + ++ + + NN Sbjct: 244 ---STPCNVYDVVEEYFALVAQYPCPLSS---ARSHMFRIWARTLLIHKDMRERIGSANN 297 Query: 300 SPDIAR 305 + Sbjct: 298 IDMLKE 303 >UniRef50_C1E1T8 Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1E1T8_9CHLO Length = 662 Score = 274 bits (701), Expect = 3e-72, Method: Composition-based stats. Identities = 72/326 (22%), Positives = 126/326 (38%), Gaps = 25/326 (7%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 ++ LAP+ + R + D+ E V + L E R PS Sbjct: 306 KLYLAPLTTTGNLPFRRICKRYG-VDITCGEMAMVTNLLQGQPA------EWALLRRHPS 358 Query: 62 GTLVRVQLLGQFPQWLAENAARAVEL-----GSWGVDLNCGCPSKTVNGSGGGATLLKDP 116 + Q+ G + ++ + G +D+N GCP V G G+ LL+ P Sbjct: 359 EDIFGAQVCGGYSDSMSRCMQLLEDEVVSKGGLDFIDINMGCPIDLVCNKGAGSMLLEKP 418 Query: 117 ELIYQGAKAMREAVPAHLPVSVKVRLG-WDSGEKKFEIADAVQQAGATELVVHGRTKEQG 175 + Q +A A P+++K R+G +D+ EI + G + +HGR+++Q Sbjct: 419 ARMEQLVRA--SAPLLSCPLTLKTRMGYFDNKRVAHEIIPKMVDWGLAGMTLHGRSRQQR 476 Query: 176 YRAEHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSR 235 Y DW I + I +I NG+++ + + + G MI RGAL P + Sbjct: 477 YS-RLADWDYINQCARASPIQLIGNGDVFSYHDYVKNVEGQGVATCMIARGALIKPWIFT 535 Query: 236 VVKYNE-PRMPWPEVVALLQKYTRL-EKQGDTGLYHVARIK----QWLSYLRKEYDEATE 289 +K + E + +L+ Y + VA + +WLS+L + Sbjct: 536 EIKERRDWDISATERLDMLKDYAAFGLEHWGADARGVANTRRFLLEWLSFLHRYVPVGLL 595 Query: 290 LFQHVRVLNNSPDIARAIQAIDIEKL 315 V + P+ + D+E L Sbjct: 596 ERMPVGIHQRPPNY---VGRSDLETL 618 >UniRef50_D2R6Z1 TIM-barrel protein, nifR3 family n=3 Tax=Planctomycetaceae RepID=D2R6Z1_9PLAN Length = 345 Score = 273 bits (700), Expect = 4e-72, Method: Composition-based stats. Identities = 82/319 (25%), Positives = 121/319 (37%), Gaps = 14/319 (4%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 +L APM G + R+++ E L TE V + L Sbjct: 15 ILQAPMAGYTNYAYRQMVREFGGAGLQATEMVNASGFAWLHEHEAEHPDRLWGVK--EEA 72 Query: 63 TLVRVQLLGQFPQWLAENAARAV-ELGSWGVDLNCGCPSKTVN-GSGGGATLLKDPELIY 120 + VQ+ P LA+ R EL VD+N GCP K V + G+ LLK P+ I Sbjct: 73 RPLAVQMWDNDPATLAKVGERLANELHVSVVDINFGCPVKDVTEKAHSGSYLLKFPDRIA 132 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWD-SGEKKFEIADAVQQAGATELVVHGRTKEQGYRAE 179 Q + + +A A PV+ K+RLG EIA V+ AGA L VHGRT +R Sbjct: 133 QIVERVVKAC-APTPVTAKIRLGCSRDAINAIEIAKVVESAGAAALTVHGRTAADFFRGT 191 Query: 180 HIDWQAIGDIRQRLN-IPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK 238 DW I +I+ L IP+I NG++ + + G D VMI R ++ P L R Sbjct: 192 -ADWNRIAEIKPHLKKIPLIGNGDLDSPEKVIEAFRRYGVDGVMIARASMGRPWLFRQAA 250 Query: 239 YN------EPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQ 292 P E + ++ L ++++ A Sbjct: 251 AALRGEPVPPDPTAEEQRLTMLRHYELTCARFGEQKGTLLMRKFACNYATGRPGARTFRA 310 Query: 293 HVRVLNNSPDIARAIQAID 311 V + D ++ Sbjct: 311 MVANVFTREDFFNVVERYF 329 >UniRef50_C1ZB06 tRNA-dihydrouridine synthase n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZB06_PLALI Length = 381 Score = 273 bits (699), Expect = 5e-72, Method: Composition-based stats. Identities = 83/315 (26%), Positives = 128/315 (40%), Gaps = 15/315 (4%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 R LAP+ G R L E+ L T+ V V L Q + + Sbjct: 50 RYGLAPLAGYTQRPFRVALRELGGMGLATTDLVHAVKLLSNNAFSQ------QLIATSLL 103 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + VQL G P +A A +LG GVDLN GCP VN GGGA L+ DP + Sbjct: 104 DQPLSVQLFGADPTHVATAARWLEDLGYEGVDLNMGCPMAKVNSQGGGARLMCDPTGATR 163 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 + +V +PV+VK+RLGWD+ +A ++ GA + +HGRT+ QG+ + Sbjct: 164 LVALVVASVS--IPVTVKMRLGWDAQSLSAPLLARQFEEVGAAAITIHGRTRAQGFSGKV 221 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSR----- 235 + +IPVI NG++ + A +GC AV IGRGA+ P + R Sbjct: 222 SREGIAATVAAVQSIPVIGNGDVRTVEDAISMRRETGCAAVAIGRGAMLDPWIFRKLHDF 281 Query: 236 VVKYNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVR 295 + E + L + R +++ + +L +R Sbjct: 282 EMTGQYAEPGPEEQIQFLVTHFREMVDLFGE-QATRLFRKFAGWYGARLGIPQDLEDRLR 340 Query: 296 VLNNSPDIARAIQAI 310 + + + + I Sbjct: 341 RVESLSEFEEIVAEI 355 >UniRef50_Q12U52 tRNA-dihydrouridine synthase n=2 Tax=Archaea RepID=Q12U52_METBU Length = 318 Score = 273 bits (699), Expect = 6e-72, Method: Composition-based stats. Identities = 74/317 (23%), Positives = 136/317 (42%), Gaps = 15/317 (4%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 +LLAP+ V + R + + LC TE + + Sbjct: 12 LLLAPLAEVTNLAFRLMCKKYG-ASLCFTEMISSDAVVYGNA------SSAMRGITCDEE 64 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGS-WGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 +QL G P+ + E A ++ +D+N GCP+ + +G G+ LL+ PEL+ Sbjct: 65 RPFGLQLFGNSPEVITEAALVLEDMFYPDMIDINLGCPAPVITNAGCGSALLESPELVSD 124 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 + E V PV+ K+R+ +S ++A ++ AG + VHGRT EQGY Sbjct: 125 IFSTLCEGV--DTPVTAKIRV-LESRAATLDMAHRLEDAGVCAITVHGRTCEQGYSGT-A 180 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNE 241 D I++ L+IPVI NG+I D SA++ + +GCD +MIGR A+ P++ + Sbjct: 181 DHSYAKLIKEELSIPVIVNGDIRDGVSAEKVLEYTGCDGLMIGRAAMGDPHVFHRISRYL 240 Query: 242 PRMPWPEVVALLQKYTRLEKQGDTGLYHVA---RIKQWLSYLRKEYDEATELFQHVRVLN 298 ++ LE + ++ +K + + + + + + + Sbjct: 241 DDGEVIGCGCEQKRDDLLEYLDLLEKFDLSSHINLKAHVQWFTRGLKGSRRMRSDIGYAD 300 Query: 299 NSPDIARAIQAIDIEKL 315 + I ++ + ++L Sbjct: 301 SRDSIVEFVKNMCEKEL 317 >UniRef50_B6YQB2 tRNA-dihydrouridine synthase n=36 Tax=Bacteria RepID=B6YQB2_AZOPC Length = 340 Score = 273 bits (698), Expect = 7e-72, Method: Composition-based stats. Identities = 83/321 (25%), Positives = 136/321 (42%), Gaps = 21/321 (6%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 V LAPMEGV + R L D+ TEF+ + V + S Sbjct: 20 VFLAPMEGVTNVYFRSLCKSFG-ADMVYTEFISADALIRHVDKIQGKLKII------NSE 72 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 + VQ+ GQ + E A E+ +DLN GCP K + GA +L+ P+ + + Sbjct: 73 HPIAVQIYGQDKDTMVEAARICEEMQPDFLDLNFGCPVKKIVRRNAGAGMLRVPKKMIEI 132 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGEK-KFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 + + +V ++P++VK RLGWD K ++A+ +Q G L +HGRT Q Y + Sbjct: 133 TQQVVHSV--NIPITVKTRLGWDENSKIIVDLAERLQDTGIALLTIHGRTGSQMYSGK-A 189 Query: 182 DWQAIGDIRQRLN--IPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY 239 DW IG ++ IP+ NG+I Q +Q G DAVMIGR ++ P + + VKY Sbjct: 190 DWNLIGAVKNNPRMYIPICGNGDIVSPQQCEQAFNRYGVDAVMIGRASIGAPWIFQEVKY 249 Query: 240 NE------PRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWL--SYLRKEYDEATELF 291 P+ + +++L++ + ++ + S L K+ Sbjct: 250 YLKYNDLAPKKSFEYYLSVLKQQILQSVSQLGERQGILNSRRHIVASPLFKKMSNFKLTK 309 Query: 292 QHVRVLNNSPDIARAIQAIDI 312 + + + I Sbjct: 310 IAMLQAITVSSLFEIMDNISN 330 >UniRef50_A7BE39 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7BE39_9ACTO Length = 411 Score = 272 bits (695), Expect = 2e-71, Method: Composition-based stats. Identities = 77/372 (20%), Positives = 135/372 (36%), Gaps = 72/372 (19%) Query: 8 MEGVLDSLVRELLTEVN------------------------------------------- 24 M GV D R L + Sbjct: 1 MAGVTDVPFRRLCRIMGESGLPDHLRPVGIPSWAAESGEGATASSPKAPGESSNEPRHVT 60 Query: 25 ------DYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGTLVRVQLLGQFPQWLA 78 L +TE V + + L+ P+ + +QL G P +A Sbjct: 61 IPRVDAPAGLYVTEMVTSRALVEENERT------LEMVRPDPAERVRSLQLYGVNPAVMA 114 Query: 79 ENAARAVELGS-WGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAV------- 130 + A VE +DLN GCP V GGGA L +L A+ A Sbjct: 115 KAATMLVERDLTDHIDLNFGCPVPKVTKKGGGAALPWKRDLFSDLVGAVVRACDEAGERA 174 Query: 131 PAHLPVSVKVRLGWDSGEKKF-EIADAVQQAGATELVVHGRTKEQGYRAEHIDWQAIGDI 189 +PV+VK+R+G DS + + A Q+ GA L +H RT+ Q Y H W I + Sbjct: 175 GREIPVTVKIRIGIDSEHETATDAALNAQKLGAAALTLHARTQNQHYAG-HAHWDEIARL 233 Query: 190 RQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN------EPR 243 + L+IPV NG++++ A + +GCD + +GRGA P + R + P Sbjct: 234 KDLLDIPVFGNGDVFEAADALAMLEQTGCDGISVGRGAQGRPWIFRDIVAAYHGGSIPPG 293 Query: 244 MPWPEVVALLQKYTRLE-KQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNNSPD 302 EVV++++ + + +++ + + + + + +++ + Sbjct: 294 PSLAEVVSVIECHAAWCVVDQGDEERALREMRKHIGWYLRGFAVGGPQRHALSMVSTLQE 353 Query: 303 IARAIQAIDIEK 314 + + +D+ + Sbjct: 354 LHERLADLDLNQ 365 >UniRef50_Q4FQ57 Possible tRNA-dihydrouridine synthase n=24 Tax=Gammaproteobacteria RepID=Q4FQ57_PSYA2 Length = 350 Score = 271 bits (693), Expect = 3e-71, Method: Composition-based stats. Identities = 132/318 (41%), Positives = 190/318 (59%), Gaps = 16/318 (5%) Query: 4 LLAPMEGVLDSLVRELLTEVN-----DYDLCITEFVRVVDQLLPVKVFHRICPELQNASR 58 LLAPMEG+ D L+R++LT++ YD ++EF+RV +LP VF++ PEL + ++ Sbjct: 34 LLAPMEGLTDPLMRQILTQIAADLGRPYDWSVSEFIRVTQHVLPAHVFYKYVPELHHDAK 93 Query: 59 TPSGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPEL 118 T SGT + +QLLG Q +AENAA A ELG+ +D+N GCP+KTVN GG+ LL +PE+ Sbjct: 94 TASGTSIHIQLLGSEAQLMAENAAHACELGAPAIDINFGCPAKTVNSHRGGSVLLDEPEV 153 Query: 119 IYQGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRA 178 +Y A+R+AVPA++PVS K+RLG+ + +I A+ +GA L +H RTK QGY+ Sbjct: 154 MYDIISAVRQAVPANIPVSAKIRLGYTDTSRMDDIRGAIAASGADWLTIHARTKTQGYK- 212 Query: 179 EHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK 238 W I L IPVIANGEIW+ + AQ CMA SG +M+GRGA+ P+L V Sbjct: 213 PPAYWDKI-QAFNSLKIPVIANGEIWNSEHAQNCMAQSGTTHLMLGRGAVTRPDLIAQVD 271 Query: 239 YNE-------PRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELF 291 P + W +++A ++ + + D + V R KQWL+ L K Y EA L+ Sbjct: 272 CGLDSEMSNTPTLLWQDLIAHQIRFLQGAAKSD--IVLVGRYKQWLAMLTKGYSEAKILW 329 Query: 292 QHVRVLNNSPDIARAIQA 309 ++ N I A+Q Sbjct: 330 DSIKREKNKTAIISALQM 347 >UniRef50_C5DS92 ZYRO0B14872p n=1 Tax=Zygosaccharomyces rouxii RepID=C5DS92_ZYGRO Length = 406 Score = 270 bits (692), Expect = 3e-71, Method: Composition-based stats. Identities = 73/311 (23%), Positives = 128/311 (41%), Gaps = 14/311 (4%) Query: 4 LLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGT 63 ++APM + R L + L T K + E+ S+ Sbjct: 22 IVAPMVDQSELAWRILSRKYG-ATLAYTPMFHAKLFATSPKYRKDMWCEMDGDSK--IDR 78 Query: 64 LVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGA 123 + VQ P++L + A + VDLN GCP G+ L+++ +L+++ Sbjct: 79 PLVVQFCANDPEYLLQAARLVQDK-CDAVDLNLGCPQGIAKKGHYGSFLMEEWDLVHKLI 137 Query: 124 KAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQ-GYRAEHID 182 + + E + +PV+ K+R+ + EK + A V AGA L VHGR +EQ G ++ D Sbjct: 138 RNLHENL--DVPVTAKIRI-FPEKEKSLQYARTVLDAGAQFLTVHGRLREQKGQQSGLAD 194 Query: 183 WQAIGDIRQRL--NIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 W+ I +R L + +NG + +CM CDAVM G L P + Sbjct: 195 WETIKYLRDNLPPDTVFFSNGNLLYPNDISRCMDQINCDAVMSAEGNLYNPGIFNAEDSQ 254 Query: 241 EPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRK-EYDEATELFQHVRVLN- 298 + +P V + ++Y + K + +K L + + T++ + +LN Sbjct: 255 DKEKVFPRVDVICREYFEIVKSYEFSHASRTAMKSHLFKILRPFLPNHTDIRSSLALLNA 314 Query: 299 --NSPDIARAI 307 + D A+ Sbjct: 315 KSSLDDYENAV 325 >UniRef50_B0S913 tRNA-dihydrouridine synthase n=7 Tax=Leptospira RepID=B0S913_LEPBA Length = 337 Score = 270 bits (692), Expect = 3e-71, Method: Composition-based stats. Identities = 74/314 (23%), Positives = 131/314 (41%), Gaps = 15/314 (4%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 V L+PM G+ DS R++ TEFV L L Sbjct: 13 VALSPMAGISDSPYRQITKRFGSA-FSYTEFVSTEQLKLGNAK------SLDMFRFVEME 65 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 + Q+ G + + A E +DLN GC V+ +G GA LLK+ L + Sbjct: 66 RPIVFQIFGSDLDTVVNASEIAAEQKPDIIDLNMGCSVSKVSHNGSGAGLLKNIRLAGKM 125 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 + +R +LPV+ K+RLGWD+ E ++ +G + + VHGRTK Y Sbjct: 126 IEGIRNR--TNLPVTAKIRLGWDANSLNYLETLKVLEDSGVSAISVHGRTKAMAYTG-IA 182 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNE 241 DW AIG+I+ R N+P+ NG++ ++ A + G D V+IGR A+ P + Sbjct: 183 DWNAIGEIKSRANVPIYGNGDVQSYKEALEKKKTYGVDLVLIGRKAIGNPWVFGKTPKQF 242 Query: 242 PRMPWPEVVALLQKYTRLEKQGDT--GLYHVARIKQWLSYLRKEYDEATELFQHVRVLNN 299 PW ++ ++ ++ L Y + ++ + + + + + + Sbjct: 243 --FPWYQIKDVILEHLDLMLNFYPTSDDYALILFRKHFIKYIENIGFPEDTKRLLLSVAS 300 Query: 300 SPDIARAIQAIDIE 313 + ++ + ++ Sbjct: 301 VNEFKDTLEFVKMD 314 >UniRef50_Q256J2 Dehydrogenases n=13 Tax=Chlamydiaceae RepID=Q256J2_CHLFF Length = 339 Score = 270 bits (691), Expect = 4e-71, Method: Composition-based stats. Identities = 74/318 (23%), Positives = 140/318 (44%), Gaps = 18/318 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 ++ AP+ G D R + + L E V++ L+ + S Sbjct: 16 IVYAPLAGFSDYPYRRMSSLYGLPALMFCEMVKIEGLHYSP------SRTLKLLEYSESM 69 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 + QL G P+ E A LG +DLNCGCP+ + G G+ LLK PELI + Sbjct: 70 RPIGGQLCGSKPEMAGEAAKVLEGLGFDLIDLNCGCPTDRITKDGSGSGLLKTPELIGKV 129 Query: 123 AKAMREAVPAHLPVSVKVRLGWD-SGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 + + +V +PV+VK+R GWD + E +++AGA+ + VHGRT+ QGY Sbjct: 130 LEKIIGSVS--IPVTVKIRSGWDGNNINVEETVRIIKEAGASAVFVHGRTRAQGY-VGPS 186 Query: 182 DWQAIGDIRQRL--NIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY 239 + + I + + PV NG+++ ++A+ + +GCD V++ RG + P ++R ++ Sbjct: 187 NLEYIARAKAAAGKDFPVFGNGDVFSPEAAKLMLDSTGCDGVLVARGTMGAPWIARQIED 246 Query: 240 NEP-----RMPWPEVVALLQKYTRLEKQGD-TGLYHVARIKQWLSYLRKEYDEATELFQH 293 +MP+ ++ ++ + + ++ + + L Sbjct: 247 YLTTGTYQKMPFSTRKQAFLQHLHWVEEYYQSEAKFLCETRKLCGHYLISAAKVRFLRSA 306 Query: 294 VRVLNNSPDIARAIQAID 311 + + + + I+A + Sbjct: 307 LSKATSVQAVYQLIEAYE 324 >UniRef50_A4EC62 Putative uncharacterized protein n=3 Tax=Collinsella RepID=A4EC62_9ACTN Length = 347 Score = 270 bits (690), Expect = 5e-71, Method: Composition-based stats. Identities = 77/321 (23%), Positives = 130/321 (40%), Gaps = 23/321 (7%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 L+APM GV D R + +L +E V V R+ Sbjct: 19 FLMAPMAGVTDPAYRIMCRRRG-ANLAYSEMVSVAGLAYASNKTWRLVLP------ADEE 71 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSW---GVDLNCGCPSKTVNGSGGGATLLKDPELI 119 + VQL G P+ A A E +D+N CP++ V G G+ L++ P+L Sbjct: 72 QQICVQLFGSKPEQFASAVAAVEERVGDRLSLIDINMACPARKVVTKGEGSALMRTPDLA 131 Query: 120 YQGAKAMREAVPAHLPVSVKVRLGW-DSGEKKFEIADAVQQAGATELVVHGRTKEQGYRA 178 + +A A AH+PV+VK+R G+ A ++ AGA + VHGR Q Y Sbjct: 132 EKIVEAAVGA--AHVPVTVKIRKGFYAEDRNAATFAQMLEGAGAAAVAVHGRCATQLYTG 189 Query: 179 EHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK 238 + DW + ++ + IPVI +G+++ + A + + SG AV I RG P + + Sbjct: 190 Q-ADWSVVDEVADAVEIPVIGSGDVFSAEDAAEHLQGSGASAVFIARGIYGNPWVFGDAR 248 Query: 239 YNE------PRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQ 292 P E + L+++ L + ++R + + S+ K A Sbjct: 249 ALALDGTPVPSRSSVERLEALREHLTLTHELLP---LMSRARTYASWYLKGMPHAAAWRA 305 Query: 293 HVRVLNNSPDIARAIQAIDIE 313 V + + + I+ + Sbjct: 306 QVVRCSTYEEFMALVDDIERD 326 >UniRef50_Q30WR3 Dihydrouridine synthase family protein n=3 Tax=Deltaproteobacteria RepID=Q30WR3_DESDG Length = 376 Score = 269 bits (689), Expect = 8e-71, Method: Composition-based stats. Identities = 83/312 (26%), Positives = 120/312 (38%), Gaps = 12/312 (3%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 R+ LAPM G+ R++L L T + P Sbjct: 58 RLFLAPMAGLGHIAYRQVLESFGGCGLVFTGMCSARAVPTENPARSPVFSW------RPE 111 Query: 62 GTL-VRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 + QL G PQ +A A R G +GVD+N GC + G GA LL+DPE Sbjct: 112 ELPALVCQLFGADPQDMAAAARRVESEGFFGVDINMGCSVAPIVKKGCGADLLRDPERAV 171 Query: 121 QGAKAMREAVPAHLPVSVKVRLGW-DSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAE 179 + A+R AV +PV VK+R GW E +A +Q AGA LV H R Sbjct: 172 RMVDAVRRAVS--VPVFVKMRTGWSPDPEPAVNLARRLQDAGADALVFHPRVAPDRRTHR 229 Query: 180 HIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY 239 IG ++ ++IPVI NG+++D + +GCD V +GR A+ P + Sbjct: 230 P-RTAHIGLVKDAVDIPVIGNGDVFDAADCAAMLERTGCDGVSLGRLAIARPWIFAQWTR 288 Query: 240 NEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNN 299 L LE D + K+ + Y + LF + ++ Sbjct: 289 GFVPEKQTYRDTLFALMDALEAHYDPAR-AIKLYKKLIMYYAANFTFGNRLFGRLIRGDD 347 Query: 300 SPDIARAIQAID 311 + R QA Sbjct: 348 MQAMRRNAQAEF 359 >UniRef50_C6XJQ7 Dihydrouridine synthase DuS n=2 Tax=Hyphomonadaceae RepID=C6XJQ7_HIRBI Length = 337 Score = 268 bits (686), Expect = 2e-70, Method: Composition-based stats. Identities = 89/325 (27%), Positives = 146/325 (44%), Gaps = 23/325 (7%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 V LAPM G D+ R + + ITE + + + + ++ + Sbjct: 13 VFLAPMSGATDAPFRRQASRFGAP-VVITEMIAGSELATGRQDM------VWRITKPENT 65 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 VQL G+ P+W+ E A + G+ +D+N GCPS+ V G GA L++D +L + Sbjct: 66 FPFVVQLAGRDPKWMYEAARISASAGADIIDINMGCPSRQVTGGQSGAALMRDLDLAREL 125 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 A RE LPVSVK+RLGWD +A ++ + VHGRT+ Q Y + Sbjct: 126 IIAARE--GGGLPVSVKMRLGWDDDTLNAPALAKICEEEHVKLITVHGRTRCQFYTGK-A 182 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNE 241 DW + +++ N+P+I NG+I ++A+Q + +S D VMIGR AL P L + + Sbjct: 183 DWNKVKEVKLASNLPLIVNGDIDSSKTAKQAILLSQADGVMIGRAALGRPWLLGKIASDL 242 Query: 242 P-----RMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSY---LRKEYD----EATE 289 W E ++ L + V ++ L+ KE + E Sbjct: 243 ANRPYIEPTWSEKLSSLCEQVSDSVLLYGDRLGVRVFRKHLAAFIDYSKEIRLNTEDRNE 302 Query: 290 LFQHVRVLNNSPDIARAIQAIDIEK 314 L +++ D+ AI +++ K Sbjct: 303 LRGRFCRISSENDVISAITSLEAPK 327 >UniRef50_B7PPV8 tRNA-dihydrouridine synthase, putative n=1 Tax=Ixodes scapularis RepID=B7PPV8_IXOSC Length = 483 Score = 268 bits (686), Expect = 2e-70, Method: Composition-based stats. Identities = 73/310 (23%), Positives = 120/310 (38%), Gaps = 20/310 (6%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 R ++APM + R L + LC T + L K + Sbjct: 19 RYVVAPMVDQSELAWRLLGRR-HGAQLCYTPMLHASVFLKDPKYRRDA------LASCDE 71 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + VQ P+ L + + V VDLN GCP GA L D +L+ + Sbjct: 72 DQPLVVQFCANDPEVLVQASRLVVGHCC-AVDLNLGCPQAIARAGHYGAFLQDDWDLLAR 130 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQ-GYRAEH 180 + + V +P++ KVR+ + EK A ++ AG L VHGRT+EQ G Sbjct: 131 MVQRVHTQV--DVPITCKVRV-FPEVEKTVRYAQMLEAAGCQVLTVHGRTREQKGPHTGL 187 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 W+ I +++ + IPVIANG I + A++C+ +G DAVM G L+ P L Sbjct: 188 ASWEHIRAVKRSVKIPVIANGNIQYLEDAERCLRETGADAVMSAEGHLHNPYLFTGRLAP 247 Query: 241 EPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNNS 300 E + L++ + H+ ++ + + D L + + + Sbjct: 248 VWEASL-EYLCLVRDHP---CPASYVRGHLFKLMHHCLTMAENVD----LREKLAKASAL 299 Query: 301 PDIARAIQAI 310 + Sbjct: 300 EAFEEVALRL 309 >UniRef50_Q54ES7 tRNA-dihydrouridine synthase 4-like protein n=1 Tax=Dictyostelium discoideum RepID=Q54ES7_DICDI Length = 344 Score = 267 bits (684), Expect = 3e-70, Method: Composition-based stats. Identities = 69/312 (22%), Positives = 122/312 (39%), Gaps = 24/312 (7%) Query: 1 MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTP 60 M+ + APM R L+ + D+ T + + + + Sbjct: 56 MK-IQAPMVRFSRLPFRMLVKKWG-CDITYTPMIMAAEFNRSEAARD------SDFTINK 107 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 + VQ + L A + + G+D+NCGCP + V G GA LL PE IY Sbjct: 108 LDEPLIVQFGVNNAEELVSAAEKVKD-YCQGIDINCGCPQRWVMKEGFGANLLLHPERIY 166 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 K + VP +P+S+K+R+ + E+A ++ G + + VHGRT + Sbjct: 167 DMVKQINNRVP--IPISIKIRV-QSDLKDTIELAKRAERIGVSWITVHGRTSAMK-SSHP 222 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 +D+ AI ++ + +PV ANG+++ + + +G + VM RG L P L + Sbjct: 223 VDYDAIKLVKDNVTLPVFANGDVFTLSQSNEIREKTGVNGVMSARGLLTNPALFQGYDKT 282 Query: 241 EPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNNS 300 + ++ + + + H + L Y+ EY E L+ Sbjct: 283 P--------IECIKDFINIYSEYGG--LHPVIFHRHLMYMLYEYHNKNE-KSEFNKLSTI 331 Query: 301 PDIARAIQAIDI 312 I I + Sbjct: 332 SGIMDYINDKFL 343 >UniRef50_Q582L4 TRNA-dihydrouridine synthase 3, putative n=5 Tax=Trypanosomatidae RepID=Q582L4_9TRYP Length = 528 Score = 267 bits (684), Expect = 3e-70, Method: Composition-based stats. Identities = 73/322 (22%), Positives = 128/322 (39%), Gaps = 22/322 (6%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 +++LAP+ V + R + E D+ + E V + K E R S Sbjct: 167 KLVLAPLTTVGNLPFRRVCKEYG-ADITVGEMAIVHNLNRLQK------SEWSLLRRHSS 219 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELG--SWGVDLNCGCPSKTVNGSGGGATLLKDP-EL 118 + +Q+ P A E G VD+NCGCP V SG G L + Sbjct: 220 EDIFGLQIAVSRPHDAITWAQAVEESGFSYDFVDINCGCPVDKVVLSGCGCGLWERKGNR 279 Query: 119 IYQGAKAMREAVPAHLPVSVKVRLGWD-SGEKKFEIADAVQQAGATELVVHGRTKEQGYR 177 + +++ PV++K R+G D + + + GA + +HGR++ Q Y Sbjct: 280 LRDVVQSLVAHQSK--PVTIKCRMGPDEENPELHKHIADYETWGAAAVTIHGRSRRQRY- 336 Query: 178 AEHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAIS-GCDAVMIGRGALNIPNLSRV 236 + +W I + ++PVI NG+I+ + + A S + MIGRGAL P + Sbjct: 337 TKLANWSYIDNCASLTSLPVIGNGDIFSCEDIVEHRAQSKNVSSFMIGRGALVKPWIFEE 396 Query: 237 VKYNE-PRMPWPEVVALLQKYTR--LEKQGDTGLYHV---ARIKQWLSYLRKEYDEATEL 290 +K + E +L+++ L G + + +WLS+L + L Sbjct: 397 IKTGRVWDISSHERFEMLRRFCNFGLSHWGADERGVLNTRRFLCEWLSFLCRYVPVG-LL 455 Query: 291 FQHVRVLNNSPDIARAIQAIDI 312 + + +N P ++ Sbjct: 456 ERPPQRINERPPYYEGRDELET 477 >UniRef50_Q9VIS4 CG10463 n=12 Tax=Drosophila RepID=Q9VIS4_DROME Length = 604 Score = 267 bits (683), Expect = 4e-70, Method: Composition-based stats. Identities = 81/321 (25%), Positives = 140/321 (43%), Gaps = 20/321 (6%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 +++L+P+ + + R + E D+ E L + E R S Sbjct: 258 KLVLSPLTTLGNLPFRRICKEFG-ADITCGEMACAQPLLKG------MGQEWALTKRHQS 310 Query: 62 GTLVRVQLLGQFPQWLAENAARAVE-LGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 + VQL G P L + A E +DLN GCP + GGG+ L++ ++ Sbjct: 311 EDVFGVQLCGNNPNMLNQAAQVIHETAQVDFIDLNIGCPIDLIYQQGGGSALMRRTNILE 370 Query: 121 QGAKAMREAVPAHLPVSVKVRLG-WDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAE 179 ++ A+ LP +VK+R G + E+ V++ GA+ + +HGR++EQ Y + Sbjct: 371 LTVRSC-AALSDRLPFTVKMRTGIYADKSVAHELLPLVEEWGASAVTLHGRSREQRY-TK 428 Query: 180 HIDWQAIGDIRQRLNI-PVIANGEIWDWQSAQQCMAI-SGCDAVMIGRGALNIPNLSRVV 237 H +W I + + PVI NG+I ++ + + +VMIGRGAL P + + + Sbjct: 429 HANWAYIEECAAKAKCMPVIGNGDILSYEDYMERRTLAPHVCSVMIGRGALIKPWIFQEI 488 Query: 238 KYNEPRMPWP-EVVALLQKYTR--LEKQGDT--GLYHVARI-KQWLSYLRKEYDEATELF 291 K + P + +LQK+ LE G G+ R +W S+L + EA + Sbjct: 489 KEKQAWSPSSGQRYEMLQKFCNYGLEHWGSDTKGVETTRRFLLEWQSFLYRYIPEALQT- 547 Query: 292 QHVRVLNNSPDIARAIQAIDI 312 + +N P R ++ Sbjct: 548 APPQKINARPQKYRGRDEMET 568 >UniRef50_C1E909 tRNA-dihydrouridine synthase (Fragment) n=2 Tax=Micromonas RepID=C1E909_9CHLO Length = 353 Score = 267 bits (682), Expect = 5e-70, Method: Composition-based stats. Identities = 80/321 (24%), Positives = 134/321 (41%), Gaps = 23/321 (7%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 + +APM + REL + T + + +K I + + Sbjct: 36 KFHVAPMVDQSELAFRELCRR-HGATCAYTPMIHARLFVEDLKYRKEI------FTTHIN 88 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + VQ P L + A+ V GVD+N GCP + GA L+ D E ++ Sbjct: 89 DRPLLVQFCANDPDMLLKAASI-VAPHCDGVDINFGCPQRIAKRGRYGAFLMDDWETVHN 147 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAE-H 180 + + + +PV+ K+R+ +D E + A V+ AGA + VHGRT+EQ A+ Sbjct: 148 LINKLDKHLS--VPVTAKIRV-YDDLETSLKYAKMVEAAGAQLIAVHGRTREQKRAADVR 204 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 +W I +I+++L +PV+ANG+I A++C+ +G D V+ L P+L Sbjct: 205 ANWAFIREIKKQLKVPVLANGDIRTLAEAEKCLEATGADGVLSAEPLLENPSLFSDPPLY 264 Query: 241 EPRMPWPEV-------VALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKE-YDEATELFQ 292 P P + LL +Y + + T L V K + + E T+L Sbjct: 265 SPSDPAHPLPVEGDVNCELLHEYLEITRTYQTPLRMV---KGHVHNMVGSWLKEFTDLRD 321 Query: 293 HVRVLNNSPDIARAIQAIDIE 313 + +S +QA E Sbjct: 322 WLNKTPHSEMTVDKLQAWTKE 342 >UniRef50_B8HFM3 TIM-barrel protein, nifR3 family n=4 Tax=Actinomycetales RepID=B8HFM3_ARTCA Length = 392 Score = 267 bits (682), Expect = 5e-70, Method: Composition-based stats. Identities = 80/322 (24%), Positives = 138/322 (42%), Gaps = 19/322 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 V+LAPM G+ +S R L E + + E V + R L+ S Sbjct: 28 VILAPMAGITNSAFRRLCREYGG-GMYVAEMVTSRALV------ERTPESLRIISHDDDE 80 Query: 63 TLVRVQLLGQFPQWLAENAARAVELG-SWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + VQL G + VE + +DLN GCP V GGG+ L +L Sbjct: 81 KVRSVQLYGVDAGTVGAAVRMLVEEDRADHIDLNFGCPVPKVTRRGGGSALPWKIDLFTA 140 Query: 122 GAK-AMREAVPAHLPVSVKVRLGWDSGEKK-FEIADAVQQAGATELVVHGRTKEQGYRAE 179 + A+REA ++P+++K+R G D + + +G + +HGRT Q Y + Sbjct: 141 IVQTAVREASKGNIPLTIKMRKGIDDDHLTYLDAGRIARDSGVAAVALHGRTAAQFYSGQ 200 Query: 180 HIDWQAIGDIRQRL-NIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK 238 DW AI +R+ L +IPV+ NG+IW + A + + +G D V++GRG P L ++ Sbjct: 201 -ADWSAIARLREALPDIPVLGNGDIWSAEDAVRMVRETGVDGVVVGRGCQGRPWLFGDLQ 259 Query: 239 YNEPRMPWPEVVALLQ------KYTRLEKQ-GDTGLYHVARIKQWLSYLRKEYDEATELF 291 L Q ++ L + + I++ +++ K Y EL Sbjct: 260 AAFEGSDVRHRPNLRQVAEGVYRHAELMVETFGDEGKALREIRKHIAWYFKGYVVGGELR 319 Query: 292 QHVRVLNNSPDIARAIQAIDIE 313 + ++ + + + +D++ Sbjct: 320 TRLALVTSLEVLRDTLAELDLD 341 >UniRef50_C2D6C5 Possible tRNA-dihydrouridine synthase n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D6C5_9ACTN Length = 390 Score = 266 bits (680), Expect = 8e-70, Method: Composition-based stats. Identities = 80/354 (22%), Positives = 129/354 (36%), Gaps = 54/354 (15%) Query: 1 MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTP 60 M L APM GV +S R ++ + +E V V + + +C Sbjct: 35 MPFLAAPMAGVTNSAYR-IMNRLGGAQYAYSEMVSVAGLCMKNQATRELCLP------HT 87 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSW---GVDLNCGCPSKTVNGSGGGATLLKDPE 117 + + VQL G P A EL +D+N CP V G G+ L+ DP Sbjct: 88 AEPNLIVQLFGSDPVQFQRACALVGELLGDKLSCIDINMACPVPKVTKRGEGSALMCDPH 147 Query: 118 LIYQGAKAMREAVPAHLPVSVKVRLGW-DSGEKKFEIADAVQQAGATELVVHGRTKEQGY 176 +A V +PV+ K+R G+ E E A+Q AGA+ L VHGR +Q Y Sbjct: 148 RACALVRACLREV--RVPVTCKIRRGYYMDHESAAEFGRALQDAGASALAVHGRFAKQLY 205 Query: 177 RAEHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRV 236 + E +W++I + + ++IPVIA+G++ + A + + + AV+I RG P + Sbjct: 206 KGE-ANWESIKRVVEAVDIPVIASGDVMSAEDACRILYKTQAHAVLIARGTYGNPWIFDD 264 Query: 237 ----------------------VKYNEPRMPWPE---------------VVALLQKYTRL 259 + E + L+ + RL Sbjct: 265 ALKIFNKKKLLLKGNPSDLSALLDAGLYNSSAREHNRHAHITDTHSISARLNALELHLRL 324 Query: 260 EKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNNSPDIARAIQAIDIE 313 H+AR + S+ A Q + +QA + Sbjct: 325 LA---ATHAHMARARSLCSWYLYGLSHAALWRQKFMTATTLDEFLHLLQAFKEQ 375 >UniRef50_Q010A0 tRNA-dihydrouridine synthase (ISS) n=2 Tax=Mamiellales RepID=Q010A0_OSTTA Length = 639 Score = 266 bits (680), Expect = 9e-70, Method: Composition-based stats. Identities = 71/297 (23%), Positives = 127/297 (42%), Gaps = 23/297 (7%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 ++ +AP+ V + R + T++ D+ ++E + L + E R P Sbjct: 270 KIYVAPLTTVGNLPFRRICTDLG-ADITVSEMAMASNLLKGDRK------EWALVRRHPI 322 Query: 62 GTLVRVQLLGQFPQWLAENAARA-VELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 +Q+ G +P + A E+ +D+N GCP V G G +L++D + + Sbjct: 323 EKCFGIQICGGYPDLMTRCAELLDNEVHCDFIDVNMGCPIDGVCAKGAGGSLMRDTDRLK 382 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEK---KFEIADAVQQAGATELVVHGRTKEQGYR 177 + ++M PV++K+R+G+ +I + GA +HGRT+EQ Y Sbjct: 383 RVVRSMTSVSST--PVTIKLRMGYFDDPSRYVAHDIISKAKSWGAYAATLHGRTREQRYS 440 Query: 178 AEHIDWQAIGDIRQRL---NIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLS 234 DW I N+P+I NG+++ +Q + +A MIGRGA+ P L Sbjct: 441 -RLADWSYIHRCADASALNNLPLIGNGDVYTYQDWNEQIANEKISTCMIGRGAIIKPWLM 499 Query: 235 RVVKY-NEPRMPWPEVVALLQKYTR--LEKQGDT--GLYHVAR-IKQWLSYLRKEYD 285 +K + E + L + + LE G G+ R + +W+SY + Sbjct: 500 TEIKEQRHWDISANERLDLFKDFVHYGLEHWGSDSVGVEKTRRYLLEWMSYTHRYVP 556 >UniRef50_A8NZY7 tRNA-dihydrouridine synthase 3 n=2 Tax=Agaricales RepID=DUS3_COPC7 Length = 676 Score = 266 bits (680), Expect = 9e-70, Method: Composition-based stats. Identities = 77/335 (22%), Positives = 133/335 (39%), Gaps = 33/335 (9%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 + LAP+ V + R + ++ D+ E L K E R PS Sbjct: 312 KTYLAPLTTVGNLPFRRMCVKLG-ADITCGEMGLATSFLAGSKE------EWSLVRRHPS 364 Query: 62 GTLVRVQLLGQFPQWLAENAARAVEL---GSWGVDLNCGCPSKTVNGSGGGATLLKDPEL 118 + +Q+ G P L A + G VDLNCGCP V +G G+ LL + Sbjct: 365 EKIFGIQVAGNKPHTLVPTAEVIAKEFPTGVDFVDLNCGCPIDLVFKAGSGSALLDNAGK 424 Query: 119 IYQGAKAMREAVPAHLPVSVKVRLGWDSGEK-KFEIADAV-QQAGATELVVHGRTKEQGY 176 + + + M A+ +P++VK+R G G ++ + + A+ + +HGRT++Q Y Sbjct: 425 LGKIIQGMNRALG-EIPLTVKIRTGVKEGRNNAHKLMPRISAEWSASAITLHGRTRQQRY 483 Query: 177 RAEHIDWQAIGDIRQRL----------NIPVIANGEIWDWQSAQQCMAISGCDAVMIGRG 226 + DW I + + +P+ G+ + Q + + G D VMIGRG Sbjct: 484 -TKLADWDYIKECVAAVRAREADEDLPPVPIFGGGDCFSSQDYWEKINNYGVDGVMIGRG 542 Query: 227 ALNIPNLSRVVKY-NEPRMPWPEVVALLQKYTRL-EKQGDTGLYHVARIKQW----LSYL 280 AL P + +K E + E + L++ Y + V +++ LS+ Sbjct: 543 ALIKPWIFTEIKERREWDISATERLQLIRDYVEYGLNHFGSDTAGVNTTRRYLCEALSFQ 602 Query: 281 RKEYDEATELFQHVRVLNNSPDIARAIQAIDIEKL 315 + L + +N + D+E L Sbjct: 603 YRYVPIG-LLERLPAKINERAP--AFVGRSDLETL 634 >UniRef50_Q4P1U2 tRNA-dihydrouridine synthase 3 n=4 Tax=Eukaryota RepID=DUS3_USTMA Length = 867 Score = 265 bits (679), Expect = 1e-69, Method: Composition-based stats. Identities = 77/340 (22%), Positives = 127/340 (37%), Gaps = 40/340 (11%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 + LAP+ + R + T D+ E L E R S Sbjct: 492 LYLAPLTTTGNLPFRRICTGYGS-DIHCGEMGLAESFLHGNAA------EWSLVRRHESE 544 Query: 63 TLVRVQLLGQFPQWLAENAARAVEL---GSWGVDLNCGCPSKTVNGSGGGATLLKDPELI 119 + QL G P L A G VD+NCGCP V G G+ LL P + Sbjct: 545 RIFGTQLCGGKPDLLVPVAEALKAEVGDGLDFVDINCGCPIDLVFNKGAGSALLDHPTKL 604 Query: 120 YQGAKAMREAVPAHLPVSVKVRLGWDSGEKKFE-IADAVQQAGATELVVHGRTKEQGYRA 178 + + M AV P+++K+R G + + + A A + +HGR+++Q Y+ Sbjct: 605 SKIVRGM-NAVLGDTPLTIKLRTGTGAKQTTHKIFAKAQTEWRVAAATLHGRSRKQRYKN 663 Query: 179 EHIDWQAIGDIR--------------------QRLNIPVIANGEIWDWQSAQQCMAISGC 218 + DW I + + IPV NG+++ WQ + + + Sbjct: 664 D-ADWGYIATCANTLRESVSEWNESSRFADEPEMVPIPVYGNGDVYSWQDYYERIERTHV 722 Query: 219 DAVMIGRGALNIPNLSRVVKYNE-PRMPWPEVVALLQKYTR--LEKQGDT--GLYHVAR- 272 D MI RGAL P L +K + E + +++K+ L G G+ R Sbjct: 723 DGEMIARGALIKPWLFTEIKERRDWDISSRERLDMMRKFAEYGLTHWGSDTHGVNTTRRF 782 Query: 273 IKQWLSYLRKEYDEATELFQHVRVLNNSPDIARAIQAIDI 312 + + +S+ + F LN+ P + R ++ Sbjct: 783 MCEMMSFTHRYVPTGLLEF-LPSRLNDRPPLFRGRDELET 821 >UniRef50_A4RQU5 Predicted protein n=2 Tax=Ostreococcus RepID=A4RQU5_OSTLU Length = 608 Score = 265 bits (678), Expect = 1e-69, Method: Composition-based stats. Identities = 60/292 (20%), Positives = 117/292 (40%), Gaps = 17/292 (5%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 ++ LAP+ V + R + + D+ E L + E R S Sbjct: 248 KLYLAPLTTVGNLPFRRVCKTLG-ADITCGEMALCTSLLQG------LPSEWALLRRHKS 300 Query: 62 GTLVRVQLLGQFPQWLAENAARAVEL-GSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 + VQ+ G +P + + +D+N GCP +V G G+ +L+ P+ + Sbjct: 301 EDIFGVQICGGYPDSVTRCCQLLEDTIDVDFIDINMGCPIDSVCQKGYGSMMLEKPKKME 360 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEK-KFEIADAVQQAGATELVVHGRTKEQGYRAE 179 +A A+ ++ K R+ + + A V + GA + +HGRT+ Q YR+ Sbjct: 361 TVIRAASAALG-KCSLTFKTRMAYTDKSRVAHTFAPKVAEWGAAAMTLHGRTRAQRYRS- 418 Query: 180 HIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY 239 DW+ ++ ++P+I NG+++ + + D M+ RGAL P L +K Sbjct: 419 VADWEYTKLTKESSSVPLIGNGDVYMQKDYYTHLEEHSVDTCMLARGALIKPWLFTEIKE 478 Query: 240 NE-PRMPWPEVVALLQKYTRL-EKQGDTGLYHVARIKQ----WLSYLRKEYD 285 + E +L+ + + + V ++ W+S+ + Sbjct: 479 RRDWDISSRERFDILKSFASFGLEHWGSDTRGVESTRKYLLEWMSFTYRYTP 530 >UniRef50_Q7PVV7 AGAP009171-PA (Fragment) n=3 Tax=Endopterygota RepID=Q7PVV7_ANOGA Length = 599 Score = 265 bits (678), Expect = 1e-69, Method: Composition-based stats. Identities = 78/322 (24%), Positives = 135/322 (41%), Gaps = 20/322 (6%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 ++ L+P+ V + R + E D+ E + + E R S Sbjct: 251 KLYLSPLTTVGNLPFRRICKEYG-VDITCGEMACAIPIINGA------IQEWALTKRHSS 303 Query: 62 GTLVRVQLLGQFPQWLAENAARAVE-LGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 L VQL G P+ + A E +DLN GCP + GGG+ LL+ ++ Sbjct: 304 EDLFGVQLCGHNPKLVTYAAQIIAEKADVDFIDLNTGCPIDLIFNQGGGSALLRRQNVLK 363 Query: 121 QGAKAMREAVPA-HLPVSVKVRLG-WDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRA 178 ++ + +VK R+G +++ E+ + GA+ + +HGRTKEQ Y Sbjct: 364 VMVQSCSRLLADYGKEFTVKTRIGIYNNKLIAHEMVPKFEDWGASLITIHGRTKEQRY-T 422 Query: 179 EHIDWQAIGDIR-QRLNIPVIANGEIWDWQSAQQCMAI-SGCDAVMIGRGALNIPNLSRV 236 + DW+ + Q ++PV NG+I+ ++ + VM+GRGAL P + + Sbjct: 423 KRADWEYLQQCATQAQSVPVFGNGDIFGYEDYEHIRTKCPNIAGVMVGRGALIKPWVFQE 482 Query: 237 VKYNEPRMPWP-EVVALLQKYTR--LEKQGDT--GLYHVARI-KQWLSYLRKEYDEATEL 290 +K + P E +L++Y LE G G+ R +W S+L + L Sbjct: 483 IKERKTLDPSSGERFEMLKRYVNYGLEHWGSDTKGVETTRRFLLEWQSFLYRYVPYG-LL 541 Query: 291 FQHVRVLNNSPDIARAIQAIDI 312 + + +N PD R ++ Sbjct: 542 ERPPQRINERPDAYRGRDDLET 563 >UniRef50_Q17M24 tRNA-dihydrouridine synthase n=2 Tax=Diptera RepID=Q17M24_AEDAE Length = 578 Score = 265 bits (678), Expect = 2e-69, Method: Composition-based stats. Identities = 74/322 (22%), Positives = 134/322 (41%), Gaps = 20/322 (6%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 ++ L+P+ V + R + E D+ E V + + E R PS Sbjct: 230 KLYLSPLTTVGNLPFRRICKEYG-VDITCGEMACSVPIING------MMQEWALTKRHPS 282 Query: 62 GTLVRVQLLGQFPQWLAENAARAVEL-GSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 L VQ+ G + ++ E VDLN GCP + GGG+ LL+ ++ Sbjct: 283 EDLFGVQICGHNQKLVSYATQVIAEHADVDFVDLNLGCPIDLIFNQGGGSALLRRRNILE 342 Query: 121 QGAKAMREAVPA-HLPVSVKVRLG-WDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRA 178 ++ + +VK R+G + + E+ ++ GA+ + +HGRTKEQ Y Sbjct: 343 VMIQSCSRILADYDKEFTVKTRMGIYANKYVAHELVPKFEEWGASLVTIHGRTKEQRY-T 401 Query: 179 EHIDWQAIGDIRQRLN-IPVIANGEIWDWQSAQQCMAI-SGCDAVMIGRGALNIPNLSRV 236 + DW I Q+ IP+ NG+I+ +Q VM+GRGAL P + + Sbjct: 402 KKADWDYIRQCAQQAKSIPIYGNGDIFCYQDYLDAKERAPELAGVMVGRGALIKPWVFQE 461 Query: 237 VKYNEP-RMPWPEVVALLQKYTRL-EKQGDTGLYHVARIKQWL----SYLRKEYDEATEL 290 +K + E + +L++Y + + V +++L S+L + + L Sbjct: 462 IKEQKNLDPSSSERMDMLKRYVNYGLEHWGSDTKGVENTRRFLLEWQSFLYRYVP-SGLL 520 Query: 291 FQHVRVLNNSPDIARAIQAIDI 312 + + +N P+ R ++ Sbjct: 521 ERPPQKINQRPEAFRGRDDLET 542 >UniRef50_C9RMP3 Dihydrouridine synthase DuS n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RMP3_FIBSS Length = 392 Score = 265 bits (677), Expect = 2e-69, Method: Composition-based stats. Identities = 82/340 (24%), Positives = 145/340 (42%), Gaps = 40/340 (11%) Query: 4 LLAPMEGVLDSLVRELLTEVND--YDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 +L+PM+GV D+ R L ++ L ++EFV + H+ P Sbjct: 25 ILSPMDGVTDAPFRRLCRVLSGDRMGLLVSEFVPTDGDAVFNPDGHK------QLKFFPE 78 Query: 62 GTLVRVQLLGQFPQWLAENA-ARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 VQ+ G+FP +A A A +++N GCP+ V G G G+ LL+D + Sbjct: 79 ERPFGVQIFGRFPDRMAAAAGKIAERYHPEFIEVNAGCPAPKVAGKGSGSGLLRDLPRLQ 138 Query: 121 QG---AKAMREAVPAHLPVSVKVRLGWDSGEKKF-EIADAVQQAGATELVVHGRTKEQGY 176 + KA+ +A +P+++K R+GWD E + G L VHGRT+ QGY Sbjct: 139 EILHDVKAVLDAKTPEIPLTLKCRIGWDDDSINVMETLKIAEGEGVEMLTVHGRTRLQGY 198 Query: 177 RAEHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRV 236 +W IG + IPVI NG++ + A++ + G V IGRGA++ P + Sbjct: 199 NG-LANWDWIGKVAAAAKIPVIGNGDVNSVECARERINTYGVSGVSIGRGAMHNPWIFGQ 257 Query: 237 VK-----YNEPRMPWPEVVALLQKYTRLEKQ-GDTGLYHVARIKQWLSYLRKEY------ 284 + + + E + + Y + + + G T + + R+KQ + L K + Sbjct: 258 IADAWEGREKHVITAQEALDVFPLYYKFKIEDGATEMNAMGRMKQLAARLCKGFVLDEKY 317 Query: 285 --DEAT------------ELFQHVRVLNNSPDIARAIQAI 310 A + Q + ++ ++ ++ + Sbjct: 318 CHPGAEGDRIQDGDNVAMSVRQALLTCQSAAEMLECVEKL 357 >UniRef50_C7H613 tRNA-dihydrouridine synthase n=3 Tax=Ruminococcaceae RepID=C7H613_9FIRM Length = 340 Score = 264 bits (676), Expect = 2e-69, Method: Composition-based stats. Identities = 72/248 (29%), Positives = 118/248 (47%), Gaps = 11/248 (4%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 R + PM G D+ R L+ + + ++E V + + P+ Sbjct: 50 RAVFGPMAGFTDAPARRLMAQ-HGAGFTVSEMVSSRALVYGDHKT------VSLLKAEPN 102 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 G VQ+ G+ P+ + + AA + +D+N GCP+ + G G+ L+ DP+ + Sbjct: 103 GAPYGVQIFGEVPEIMGQAAAAVEQYAFDFLDINMGCPAPKIVSGGAGSKLMLDPDRCGR 162 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKK-FEIADAVQQAGATELVVHGRTKEQGYRAEH 180 + + + PV+VK+R GWD+ E A A +QAGA + VH RT+EQ Y Sbjct: 163 IVEEVVKNTS--RPVTVKMRKGWDAEHVTAVECAKACEQAGAVLIAVHARTREQMY-TPG 219 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 ID I ++ +++PV+ NG+I + A + + +GCD VMI R AL P L V Sbjct: 220 IDPSIIAAVKDAVHVPVLGNGDIRTAEDAVRMVEETGCDGVMIARAALGDPWLFERVNAA 279 Query: 241 EPRMPWPE 248 +P P+ Sbjct: 280 LEGLPRPQ 287 >UniRef50_A7HK00 Dihydrouridine synthase DuS n=8 Tax=Thermotogaceae RepID=A7HK00_FERNB Length = 322 Score = 264 bits (675), Expect = 3e-69, Method: Composition-based stats. Identities = 75/309 (24%), Positives = 126/309 (40%), Gaps = 22/309 (7%) Query: 5 LAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGTL 64 LAPM GV D R+L + Y TE + ++ VK+ E+ + Sbjct: 13 LAPMAGVTDYPFRKLCLQHGAY-FAFTEMISAKSVIINVKI-----NEIYFPRQDEKDR- 65 Query: 65 VRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAK 124 V VQL G L+E AA E G VDLN GCP V G G+ LLKD + + Sbjct: 66 VGVQLFGSDYAELSEAAAIVQEKGL-WVDLNAGCPVSKVIKKGAGSALLKDLGEFRKVVR 124 Query: 125 AMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHIDWQ 184 AMR + +VK R+GW ++ +I + + + + VHGRT +Q Y + W Sbjct: 125 AMRSVLKR---FTVKTRIGW-EKDEFEKIYNILLEENVDAVFVHGRTAKQMYSGK-ATW- 178 Query: 185 AIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNEPRM 244 I +P+ +G+I+ + + M SG V++ RG++ P + + Sbjct: 179 ---KIYNPGFVPLYISGDIYTKEDIKNAMEQSGATGVIVARGSIGNPWIFSEIGE----P 231 Query: 245 PWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNNSPDIA 304 + + + K+ V +++++ K A + V + +++ Sbjct: 232 NCEQRLCTILKHLEYLYDEYKDYGAVV-FRKFVAGYTKNMLGARDFRDKVMKIRKLEELS 290 Query: 305 RAIQAIDIE 313 Q E Sbjct: 291 SEFQKFFYE 299 >UniRef50_Q4PG83 Putative uncharacterized protein n=2 Tax=Ustilaginomycotina RepID=Q4PG83_USTMA Length = 527 Score = 264 bits (675), Expect = 4e-69, Method: Composition-based stats. Identities = 76/353 (21%), Positives = 127/353 (35%), Gaps = 48/353 (13%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQL-LPVKVFHRICPELQNASRTP 60 R ++APM + R L DL T + K E+ Sbjct: 50 RRVVAPMVDQSELAWRILSRRYGS-DLVYTPMINAKLFADENSKKKKVKYQEVNFNREHA 108 Query: 61 SG----------------------TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGC 98 + VQ P+ L + A + VDLN GC Sbjct: 109 EEGASSPIASLLSNEGEGSSKDTDRPLFVQFCSNDPETLLKAAKVVEDR-CDAVDLNLGC 167 Query: 99 PSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQ 158 P G+ L++D LI+ + V +PV+ K+R+ ++S EK A ++ Sbjct: 168 PQHIARRGHYGSYLMEDWSLIFSLINILH--VNLKVPVTAKMRV-YESVEKTITYARLLE 224 Query: 159 QAGATELVVHGRTKEQ-GYRAEHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISG 217 +AGA + VHGRT+ G+ DW I +++ +N+PV ANG + Q +A +G Sbjct: 225 RAGAQIITVHGRTRNMKGHLTGLADWAKIRAVKEAVNVPVFANGNVLYPQDFYDALAATG 284 Query: 218 CDAVMIGRGALNIPNL--------SRVVKYNEPRMPWPEVVALLQKYTRLEKQGDTGLYH 269 D VM G L P + + N P +P P +V + +Y + T Sbjct: 285 ADGVMSAEGNLYNPAIMLPNPPKQPSAMFPNAPELPLPSIVKMAHEYLDIVCSLRTPTQS 344 Query: 270 VARIKQWLSYLRK-EYDEATELFQHVRVLN---------NSPDIARAIQAIDI 312 + IK L L + + +L + + + + ++ Sbjct: 345 -SAIKAHLFRLCRPALEVHRDLREQLGKSHFDHTASGADKIVTYRAFVDELER 396 >UniRef50_B0UHM8 TIM-barrel protein, nifR3 family n=6 Tax=Rhizobiales RepID=B0UHM8_METS4 Length = 358 Score = 263 bits (674), Expect = 5e-69, Method: Composition-based stats. Identities = 88/318 (27%), Positives = 139/318 (43%), Gaps = 18/318 (5%) Query: 4 LLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGT 63 LLAP+ GV D +R + ++E V D E + + Sbjct: 31 LLAPLSGVTDLHLRRIARRCG-ASAVVSEMVAAEDLARGSA-------EARLRAEGEGVR 82 Query: 64 LVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGA 123 VQL G P+W+AE A A G+ +D+N GCP+K V G G+ L++D + + Sbjct: 83 PHVVQLAGCDPRWMAEGARLAEANGADVIDVNMGCPAKKVTGGEAGSALMRDLDHAARLL 142 Query: 124 KAMREAVPAHLPVSVKVRLGWDSG-EKKFEIADAVQQAGATELVVHGRTKEQGYRAEHID 182 A+REAV +PV+VK+RLGWD ++A + G + + VHGRT++Q Y D Sbjct: 143 AAVREAVA--VPVTVKMRLGWDDASRNAPDLARRAEALGLSAVTVHGRTRQQFYAGR-AD 199 Query: 183 WQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNEP 242 W AI + + ++IPV+ANG++ A+ C+A SG AVMIGR A+ P L V Sbjct: 200 WAAIRAVVEAVSIPVVANGDVGSLAEARACLAESGAAAVMIGRAAVGRPWLVGAVAAGLR 259 Query: 243 RMPWPEVVALLQ-----KYTRLEKQGDTGLYHVARIKQWLSYLRKEYDE-ATELFQHVRV 296 P P + Q ++ V ++ L+ A + Sbjct: 260 GAPAPALTRAAQADLAGEHYEGLLALYGVAMGVRHARKHLAAYADHAGGLAAGERARLVT 319 Query: 297 LNNSPDIARAIQAIDIEK 314 + + ++ + Sbjct: 320 TTDPAEALALLRRAFAGE 337 >UniRef50_C1ZGV0 tRNA-dihydrouridine synthase n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZGV0_PLALI Length = 322 Score = 263 bits (674), Expect = 5e-69, Method: Composition-based stats. Identities = 80/318 (25%), Positives = 130/318 (40%), Gaps = 17/318 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 + LAPME R + + L +E + D K ++ S T + Sbjct: 12 LTLAPMEEHTSLPFRLICKQQG-ASLVCSERIDAKDVAERDKR------AIKLLSTTSAE 64 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 Q+ G + E A ELG VDLN CP + + G G G L+ P+ I + Sbjct: 65 RPAVGQISGNDAAQIGEAARVIEELGFSMVDLNFECPIRRLVGRGEGGALMGQPQRIAEL 124 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGEKK-FEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 A ++AV +PV+VK+R G +GE E A V+QAG +++H R+ EQ Y Sbjct: 125 VAAAKQAVS--IPVTVKLRTGPKAGEDTAVETAQRVEQAGGAAIILHARSVEQAYLGGP- 181 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNE 241 DWQ + +++ ++IPV+ +G + Q A + SG D V IGRG L P + + + Sbjct: 182 DWQHVTRVKEAVSIPVLGSGGVRTPQDAISFLESSGADGVAIGRGCLGNPWIFQQARTLL 241 Query: 242 P------RMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVR 295 E +L E + + R+ + Y K + E + + Sbjct: 242 FGSREIIEPSPAERGKVLLALVEHEFEFYSAHLAQKRLARTACYFAKFLPDFAEFKKEIH 301 Query: 296 VLNNSPDIARAIQAIDIE 313 + N ++ Sbjct: 302 AIKNLAQFRTLVREWFRP 319 >UniRef50_Q1J2A4 Dihydrouridine synthase, DuS n=3 Tax=Deinococcus RepID=Q1J2A4_DEIGD Length = 333 Score = 262 bits (671), Expect = 9e-69, Method: Composition-based stats. Identities = 97/318 (30%), Positives = 148/318 (46%), Gaps = 21/318 (6%) Query: 4 LLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGT 63 +LAPM G D+ +R+L E ++E + +L L P Sbjct: 18 VLAPMAGYSDAPMRQLAAEQG-ALWTVSEMISARGLVLGGDSEK-----LTLGRPYPGEV 71 Query: 64 LVRVQLLGQFPQWLAENAARAVELGS-WGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 VQL G P LA+ ARA + +DLN GCP V GGA LL+ PE+ Y Sbjct: 72 GRVVQLFGAEPDVLAQAVARAESWFAPAALDLNMGCPVPKV-KGRGGACLLQTPEVAYTL 130 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHID 182 +AMR A VS K+RLGWD+ ++ EIA + AGA + VHGRT Q Y E D Sbjct: 131 VRAMRSATTLD--VSAKIRLGWDT-DRSVEIAQGLAAAGAALITVHGRTSVQRYSGE-AD 186 Query: 183 WQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNEP 242 W AI + + +PV+ +G++ + A+ + +G AVMIGRGA+ P L R + + Sbjct: 187 WDAIARVAASVKVPVVGSGDVKSAEQARARLN-TGVAAVMIGRGAVGNPWLFRALASGDD 245 Query: 243 RMP-WPEVVALLQKYTRLEKQGDT----GLYHVARIKQWLSYLRKEYDEATELFQHVRVL 297 +P E ++ +L GL V +++ L + + EL + + Sbjct: 246 VVPSAQERARTALRHAQLHVTFYGPDRFGLLSVRPLRKVLPHY---LPDHPELRAALVQV 302 Query: 298 NNSPDIARAIQAIDIEKL 315 N D+ +A+ + ++ L Sbjct: 303 NTVADVEQALAPLLVDAL 320 >UniRef50_UPI0001792282 PREDICTED: similar to tRNA-dihydrouridine synthase n=1 Tax=Acyrthosiphon pisum RepID=UPI0001792282 Length = 578 Score = 262 bits (671), Expect = 9e-69, Method: Composition-based stats. Identities = 70/321 (21%), Positives = 135/321 (42%), Gaps = 21/321 (6%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 ++ LAP+ V + R + E D+ +E V L E R + Sbjct: 232 KLYLAPLTTVGNLPFRRICKEFG-ADITCSEMVLSSSLLQG------HNQEWALTKRHET 284 Query: 62 GTLVRVQLLGQFPQWLAENAARAVEL-GSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 + +Q+ G P LA++A E +DLN GCP + G G+ LL + + Sbjct: 285 EDIFGIQVCGNNPYMLAKSAQVLQENVDMDFLDLNLGCPLDQIYKQGAGSGLLLRSKKLE 344 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEK-KFEIADAVQQAGATELVVHGRTKEQGYRAE 179 K+MR + +P++VK R G + + ++ + +G + + VHGR+++Q Y + Sbjct: 345 VCLKSMRTVL--DVPLTVKTRSGVNKDQNVAHDLIPMFKDSGVSLITVHGRSRDQRY-TK 401 Query: 180 HIDWQAIGDIRQ-RLNIPVIANGEIWDWQSAQQ-CMAISGCDAVMIGRGALNIPNLSRVV 237 DW + + + + V ++G+I ++ + MIGRGAL P + + + Sbjct: 402 MADWNYVNECAKLASPVQVFSSGDIMSYEDYVDSKLQFPDITGAMIGRGALIKPWIFKEL 461 Query: 238 KYN-EPRMPWPEVVALLQKYTRL-EKQGDTGLYHVARIKQ----WLSYLRKEYDEATELF 291 K N + E + +L+KY + + + V ++ WLS+ + L Sbjct: 462 KENCHWDISSNERLEILKKYVKYGLEHWGSDTRGVETTRKFLLEWLSFCYRYIPVG-ILE 520 Query: 292 QHVRVLNNSPDIARAIQAIDI 312 + + +N P + ++ Sbjct: 521 RVPQKVNERPPHYKGRDDLET 541 >UniRef50_Q5KP54 Putative uncharacterized protein n=1 Tax=Filobasidiella neoformans RepID=Q5KP54_CRYNE Length = 610 Score = 262 bits (670), Expect = 1e-68, Method: Composition-based stats. Identities = 78/352 (22%), Positives = 124/352 (35%), Gaps = 49/352 (13%) Query: 2 RVLLAPMEGVLDSLVREL------------------------LTEVNDYDLCITEFVRVV 37 + ++APM + R L + +C T + Sbjct: 53 KFVVAPMVDQSELAWRLLSRSPLPPALAGPSETVTTPQGKAYIRHPGGAHVCYTPMIHAK 112 Query: 38 DQLLPVKV------------FHRICPELQNASRTPSGTLVRVQLLGQFPQWLAENAARAV 85 + E + VQ P L A + V Sbjct: 113 VFVDAKGEGGRNGDGQFCLSLDEEGGEGTIGGVEGGDRPLIVQFCANDPDILLAAAKK-V 171 Query: 86 ELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVSVKVRLGWD 145 E VD+N GCP G+ L + ELI++ + E + +PV+ K R+ + Sbjct: 172 EHRCDAVDINFGCPQGIAKRGHYGSFLQDEWELIHKLISTLHENLS--VPVTAKFRI-FP 228 Query: 146 SGEKKFEIADAVQQAGATELVVHGRTKEQ-GYRAEHIDWQAIGDIRQRLNIPVIANGEIW 204 +K A ++ AGA L HGRT+E G DW+ I ++++ + +PV ANG I Sbjct: 229 DLDKTIAYARMMEAAGAQILTCHGRTREMKGQNTGLADWEYIREVKKAVKVPVFANGNIL 288 Query: 205 DWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNEPRMPWPEVVALLQKYTRLEKQGD 264 + +CM ++GCD VM G L+ P + E P + L +Y + + D Sbjct: 289 YREDVDRCMEVTGCDGVMTAEGNLSNPAIF---MPPEHPHAHPPITVLAHRYLDIVEALD 345 Query: 265 TGLYHVARIKQWLSYLRKE-YDEATELFQHVRVLN---NSPDIARAIQAIDI 312 T + IK L L K D EL + I+ I+ Sbjct: 346 TP-TAGSAIKAHLFRLLKPVLDTDEELRVQIATCRWSDGMDGFREIIRDIER 396 >UniRef50_D1AII6 Dihydrouridine synthase DuS n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AII6_SEBTE Length = 309 Score = 262 bits (670), Expect = 1e-68, Method: Composition-based stats. Identities = 66/315 (20%), Positives = 139/315 (44%), Gaps = 18/315 (5%) Query: 1 MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTP 60 M+++ APM G+ D R++L E + D+ TE V V + + + Sbjct: 1 MQIITAPMAGITDYSFRKILYEFS-PDIIFTEMVDVNALKYSNQRTQD-----EILRKAG 54 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 + VQ+ G + E +E G +D+N GCP K + +G G+ LL + + + Sbjct: 55 NE---AVQIFGNKNEDFLEAVKLLIERGFDHIDINLGCPVKKIIRAGKGSALLLESDFVK 111 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 + +++ + +S+K+R G+ + ++ G ++ +HGRT+EQ Y + Sbjct: 112 ELLLKLKKEFRNDIKLSMKIRTGYKNFSDPEYYVKLAEEYGLFQICIHGRTQEQLYSGQ- 170 Query: 181 IDWQAIGDIRQRLN-IPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY 239 DW I ++Q+ + +I NG++ D ++ ++ + D +M+ RG L P L + K Sbjct: 171 ADWNIIKKMKQKHKNVKIIGNGDLTDLKTIKEKTDSAKPDGIMLARGLLGNPWLLKEAKD 230 Query: 240 -------NEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQ 292 +E + E+ L K+ + + +++ + + KE++ ++ Sbjct: 231 YFKTGVFHESEVGREEIKNTLIKHINYCIEDKGEIRANLDMRKHIFWYLKEFENIEKIKN 290 Query: 293 HVRVLNNSPDIARAI 307 + D+ + I Sbjct: 291 DIIKTKTIKDVLKYI 305 >UniRef50_B9XLX7 Dihydrouridine synthase DuS n=3 Tax=Verrucomicrobia RepID=B9XLX7_9BACT Length = 340 Score = 262 bits (669), Expect = 2e-68, Method: Composition-based stats. Identities = 76/312 (24%), Positives = 145/312 (46%), Gaps = 15/312 (4%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 + LAPM+ V D ++++ D+ TE+ RV K L++ ++ P+G Sbjct: 9 LALAPMQDVTDLPFMKVISSYGSADVYYTEYFRVHGSSNLEKWI------LESITKNPTG 62 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 V Q++G L +A + VDLN GCP+ V G LL++P+ + Sbjct: 63 QPVIAQMIGNDIPSLVRSAKELQQYPIVAVDLNLGCPAPIVYRKCAGGGLLREPKRVDSI 122 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHID 182 A+R+A+ +VK R+G+DS E+ + L VHGRT ++ YR+E + Sbjct: 123 LGALRDAISVKF--TVKTRIGFDSTGVFDELLPIFAKHSIDLLTVHGRTVQEMYRSE-VH 179 Query: 183 WQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNEP 242 + I Q ++ PV+ANG ++ + A++ + +G +MIGRG + P L ++++ Sbjct: 180 YDFIARAAQAVSCPVLANGNVYSAKKAEEVLQFTGARGLMIGRGVIRNPWLFHQIRHHRR 239 Query: 243 RMPW-----PEVVALLQ-KYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRV 296 P +V+ ++ Y + L V ++K++L+Y+ + + +R Sbjct: 240 GEPIFIPKGHDVLQYIRTLYDAVRPPDIRELAQVQKMKKYLNYVGLGVEPTGQFLHQIRR 299 Query: 297 LNNSPDIARAIQ 308 + + + + Sbjct: 300 ATSEVEFFKICE 311 >UniRef50_C5F231 Putative uncharacterized protein n=2 Tax=Helicobacter RepID=C5F231_9HELI Length = 317 Score = 262 bits (669), Expect = 2e-68, Method: Composition-based stats. Identities = 82/312 (26%), Positives = 140/312 (44%), Gaps = 13/312 (4%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 ++LAP+ G D RE++ + D+ ++E + V K ++ ++P Sbjct: 11 LMLAPLAGYSDLPFREVVKKFG-ADITVSEMISVHALAFKNKKT------IKMIEKSPLE 63 Query: 63 TLVRVQLLGQFPQWLAENAARAVELG--SWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 +Q+ G + + E +DLNCGCP+ V+ G G++LLKD + Sbjct: 64 NPFALQIAGNDFGIIQKAVEFLNEFKNEIQILDLNCGCPAPKVSSHGSGSSLLKDLNKLV 123 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 + + +RE +SVKVRLG+D EIA+A+ + +VVHGRTK GY+ + Sbjct: 124 KILQLLRETSVFPY-LSVKVRLGFDKKIP-LEIANALNDSPIDYVVVHGRTKSDGYKKDK 181 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 ID+ +I I+Q + P+IANGEI Q A++ ++G + VMIGR A+ P + +K N Sbjct: 182 IDYDSIRLIKQNIQHPLIANGEITSPQIAKKVQELTGAEGVMIGRAAIEKPWIFTQIKNN 241 Query: 241 EPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNNS 300 + ++ + ++ L K A++ V + N Sbjct: 242 L-EESIELRKQVALEHFDRTISFRGDYGAI-MFRKNLHAYSKGLKGASDFRNKVNAITNP 299 Query: 301 PDIARAIQAIDI 312 + I Sbjct: 300 ALMREEIFNFFT 311 >UniRef50_A8QBG9 PP3111 protein, putative n=1 Tax=Brugia malayi RepID=A8QBG9_BRUMA Length = 513 Score = 261 bits (667), Expect = 2e-68, Method: Composition-based stats. Identities = 76/312 (24%), Positives = 127/312 (40%), Gaps = 22/312 (7%) Query: 1 MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTP 60 +R ++APM + R +L + + LC + + + + R S Sbjct: 60 IRYVVAPMVDQSELAFRMMLRK-HGAHLCFSPMIHAQ-LFVTDATYRRTA-----LSTCL 112 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 + VQ P L VE GVDLN GCP GA L +D +LI Sbjct: 113 DDRPLVVQFCANDPVILLNACQ-LVESFCDGVDLNLGCPQLIAKRGHYGAYLQEDLKLIC 171 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQ-GYRAE 179 + + + LP+S K+R+ + A A+ +AGA L VHGRT+EQ G Sbjct: 172 EMITLLHSH--SRLPLSCKIRI-LQDINETVAYARALVKAGACMLTVHGRTREQRGPNTG 228 Query: 180 HIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY 239 DW A+ + +++PV+ANG I +C+ I+G A+M G L+ P L ++ Sbjct: 229 LADWYAMRAVVSAVDVPVLANGNIQLPGDVDRCLEITGASAIMSAEGILSNPYLFEK-RH 287 Query: 240 NEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNN 299 E + ++Y E H+ RI E ++L + + + Sbjct: 288 EVNWTAAREYLDFAERY---ESTTSAVRAHLFRICHH------SLLEYSDLRERLSYVCT 338 Query: 300 SPDIARAIQAID 311 + D + + ++ Sbjct: 339 TEDFRQIMDDLE 350 >UniRef50_Q8SUV4 Putative uncharacterized protein ECU07_1610 n=1 Tax=Encephalitozoon cuniculi RepID=Q8SUV4_ENCCU Length = 341 Score = 261 bits (667), Expect = 3e-68, Method: Composition-based stats. Identities = 73/283 (25%), Positives = 125/283 (44%), Gaps = 19/283 (6%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 +APM G + R L + ++ TE V L + + + + + Sbjct: 13 FAVAPMVGNSEEAWRRLSKR-HGANIFYTEMVHCDSFLRGSRNPVKN----RWYTTSEGD 67 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 + VQ+ G P+ + E A + +D+N GCP K G GA L ++ +L + Sbjct: 68 RPLVVQICGNSPEVMLEAALIIQD-HCDAIDVNFGCPQKVARKGGYGAYLQENWKLTGEI 126 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRA-EHI 181 K + + ++PV K+R+ + S EK E A +++AG + L VHGRT++Q A Sbjct: 127 VKVLSSGL--NVPVFCKIRV-FGSIEKTVEYAKMIEEAGCSLLAVHGRTRDQRGAAMGFA 183 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNE 241 W+ I I++ L IPV++NG I +C+ +GCD VM+G L+ P + Sbjct: 184 SWKHIRAIKENLRIPVLSNGNIMTHHDVWRCLEYTGCDGVMVGEAHLHNPLIFTGED--- 240 Query: 242 PRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEY 284 + ++ +Y + + G V IK + L Y Sbjct: 241 -----RSCLEIIGEYLDICMEF-PGSADVRHIKSHMFRLLYNY 277 >UniRef50_Q9FH91 Gb|AAF51525.1 n=7 Tax=Viridiplantae RepID=Q9FH91_ARATH Length = 423 Score = 260 bits (666), Expect = 4e-68, Method: Composition-based stats. Identities = 65/308 (21%), Positives = 122/308 (39%), Gaps = 25/308 (8%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 + ++APM + R L + T + K + Q + Sbjct: 89 KYIVAPMVDNSELPFRLLCQKYG-AQAAYTPMLHSRIFTETEKYRN------QEFTTCKE 141 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + VQ P L E A R VE VD+N GCP + GA L+ + L+ Sbjct: 142 DRPLFVQFCANDPDTLLEAAKR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKS 200 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQG-YRAEH 180 + + + + ++PVS K+R+ + + E + A ++ AG + L VHGRT+++ + Sbjct: 201 LVEKLAQNL--NVPVSCKIRI-FPNLEDTLKYAKMLEDAGCSLLAVHGRTRDEKDGKKFR 257 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 DW AI +++ + IPV+ANG + + C+ +G + V+ L P + Sbjct: 258 ADWSAIKEVKNAMRIPVLANGNVRCIEDVDNCIKETGVEGVLSAETLLENPAAFAGFRTA 317 Query: 241 EPRMPWPE---------VVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKE-YDEATEL 290 E E L+ +Y +L ++ I+ + + E + ++ Sbjct: 318 EWAKDNEEEGFVDGGLDQGDLVVEYLKLCEKHPVP---WRMIRSHVHKMLGEWFRIHPQV 374 Query: 291 FQHVRVLN 298 + + N Sbjct: 375 REQLNAQN 382 >UniRef50_Q1QZQ6 Dihydrouridine synthase, DuS n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QZQ6_CHRSD Length = 340 Score = 260 bits (665), Expect = 5e-68, Method: Composition-based stats. Identities = 135/314 (42%), Positives = 185/314 (58%), Gaps = 9/314 (2%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNAS-RTP 60 R+ LAPMEGV+D + RELL+ D +TEFVRVVD LP +VF R CPEL+ A+ T Sbjct: 8 RIGLAPMEGVIDVVTRELLSADGALDWTVTEFVRVVDTRLPARVFLRHCPELETAACATA 67 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 SGT V +QLLG P+ LA NA RA LG+ VDLN GCP+KTVN GGA+LL+ PE ++ Sbjct: 68 SGTPVHLQLLGSDPEALAANAVRAQALGARQVDLNFGCPAKTVNRHDGGASLLRQPERVH 127 Query: 121 QGAKAMREAV-PAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAE 179 +A+ EA+ P + V+ K+RLG+D A+A + GA LVVH RT+ +GYR Sbjct: 128 TVVRAVAEALAPLGIAVTAKIRLGFDDKHVALACAEAAESGGAAHLVVHARTRREGYR-P 186 Query: 180 HIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY 239 W+ IG I+ RL+IPVIANG+IW + + +SGC VM+GRG L P L+R +K+ Sbjct: 187 PAHWEWIGRIQARLSIPVIANGDIWTLEDYWKARTLSGCADVMLGRGMLADPWLARRIKH 246 Query: 240 NE------PRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQH 293 + P PW +L Y + + V+ +KQWL+ +R ++EA F Sbjct: 247 WQRHGEMLPATPWSARAEILHAYAQRMRAHLPEKVVVSLLKQWLNQMRGRHEEAARRFAA 306 Query: 294 VRVLNNSPDIARAI 307 +R D + Sbjct: 307 LRRRTELADFLAGL 320 >UniRef50_O95620 tRNA-dihydrouridine synthase 4-like n=40 Tax=Metazoa RepID=DUS4L_HUMAN Length = 317 Score = 260 bits (664), Expect = 6e-68, Method: Composition-based stats. Identities = 74/305 (24%), Positives = 133/305 (43%), Gaps = 24/305 (7%) Query: 4 LLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGT 63 + APM R L+ + + DLC T + D + +K + Sbjct: 30 VCAPMVRYSKLAFRTLVRKYS-CDLCYTPMIVAADFVKSIKARD------SEFTTNQGDC 82 Query: 64 LVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGA 123 + VQ + L++ A R V + G+D+NCGCP + G GA L+ PEL+ Sbjct: 83 PLIVQFAANDARLLSDAA-RIVCPYANGIDINCGCPQRWAMAEGYGACLINKPELVQDMV 141 Query: 124 KAMREAVP-AHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHID 182 K +R V VS+K+R+ D ++ ++ + G + + VHGRT E+ ++ + Sbjct: 142 KQVRNQVETPGFSVSIKIRI-HDDLKRTVDLCQKAEATGVSWITVHGRTAEERHQ--PVH 198 Query: 183 WQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNEP 242 + +I I++ ++IPVIANG+I + A+ I+G D VM+ RG L P + + Sbjct: 199 YDSIKIIKENMSIPVIANGDIRSLKEAENVWRITGTDGVMVARGLLANPAMFAGYEETPL 258 Query: 243 RMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNNSPD 302 + W V + + T Q L Y+ ++ + + + L+++ Sbjct: 259 KCIWDWV--------DIALELGTPYMCFH---QHLMYMMEKIT-SRQEKRVFNALSSTSA 306 Query: 303 IARAI 307 I + Sbjct: 307 IIDYL 311 >UniRef50_A8F480 Dihydrouridine synthase DuS n=1 Tax=Thermotoga lettingae TMO RepID=A8F480_THELT Length = 305 Score = 259 bits (663), Expect = 8e-68, Method: Composition-based stats. Identities = 72/306 (23%), Positives = 134/306 (43%), Gaps = 21/306 (6%) Query: 8 MEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGTLVRV 67 M G+ + R++ T TE + + K R+ P V V Sbjct: 1 MAGITNRAFRKICT-FWGAQFSFTEMISAESVVRNFKTVQRMLP--------KDEPNVAV 51 Query: 68 QLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMR 127 QL G P+ LA+ A VE + +D+N CP K V G LL D E + + +++ Sbjct: 52 QLFGNDPKTLAQAAKI-VEPYAAWIDINAACPVKKVIKKNSGGALLNDLERLEKIIGSVK 110 Query: 128 EAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHIDWQAIG 187 +V PV+VK+R+G++ +I + +AGA + VHGRT Q Y + A Sbjct: 111 SSVQK--PVTVKIRIGFEKN-ILDQIVHSCIKAGADGIEVHGRTVVQKYSGK-----AFW 162 Query: 188 DIR-QRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNEPRMPW 246 D++ + I +G+I++ + + + +SG ++ +I RGAL P + + Sbjct: 163 DLKLSQYGISTAVSGDIFEAEDFHKALEMSGANSALIARGALRKPWIFAQITQKRTPK-I 221 Query: 247 PEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNNSPDIARA 306 E+ K+ +++ + + + +++Q+++ A E + LN D+ +A Sbjct: 222 TEIKETFTKHLKMQIEDEGERS-IYKMRQFVAGYTHGMRGAREFREKFMKLNKPEDMEKA 280 Query: 307 IQAIDI 312 I+ Sbjct: 281 IEEFFN 286 >UniRef50_Q5KC68 tRNA-dihydrouridine synthase 3 n=2 Tax=Filobasidiella neoformans RepID=DUS3_CRYNE Length = 725 Score = 259 bits (663), Expect = 8e-68, Method: Composition-based stats. Identities = 81/332 (24%), Positives = 128/332 (38%), Gaps = 33/332 (9%) Query: 4 LLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGT 63 LAP+ V + R L + + ++E + K E R S Sbjct: 361 YLAPLTTVGNLPFRRLCVDYG-ATITVSEMALAQPLVYGAKE------EWALVRRHESEK 413 Query: 64 LVRVQLLGQFPQWLAENAARAVEL-----GSWGVDLNCGCPSKTVNGSGGGATLLKDPEL 118 + VQ+ G FP + A G VD+N GCP V G G+ L+ P Sbjct: 414 MFGVQVAGGFPNRMVPAAEVIANTIGKGGGVDFVDVNMGCPIDLVFNQGAGSALMDSPGR 473 Query: 119 IYQGAKAMREAVPAHLPVSVKVRLGWDSGEKKFE--IADAVQQAGATELVVHGRTKEQGY 176 + + M A+ +P++VK R G G+ I V + GA L +HGR+++Q Y Sbjct: 474 LGKLLVGMNRALG-DIPLTVKFRTGVAHGKPNAHKLIPRFVTEWGAGALTIHGRSRQQRY 532 Query: 177 RAEHIDWQAIGDIRQRL----------NIPVIANGEIWDWQSAQQCMAISGCDAVMIGRG 226 + DW+ I L +P+ NG+ + S + M SG D VM+ RG Sbjct: 533 S-KPADWEYIKTCVTALRESVADANLPPVPIFGNGDCFSAASYYEEMDRSGVDGVMVARG 591 Query: 227 ALNIPNLSRVVKY-NEPRMPWPEVVALLQKYTR--LEKQGDT--GLYHVARI-KQWLSYL 280 AL P + +K E + E + ++K+ L G G+ R + LS+ Sbjct: 592 ALIKPWIFTEIKERREWDISAVERLEGIKKFAEFGLSHWGSDTQGVNTTRRFLCEALSFQ 651 Query: 281 RKEYDEATELFQHVRVLNNSPDIARAIQAIDI 312 + L + LN P R ++ Sbjct: 652 HRYIPIG-LLERLPAKLNERPPAYRGRNELET 682 >UniRef50_Q7X346 Putative uncharacterized protein n=1 Tax=uncultured Acidobacteria bacterium RepID=Q7X346_9BACT Length = 355 Score = 259 bits (662), Expect = 1e-67, Method: Composition-based stats. Identities = 81/277 (29%), Positives = 125/277 (45%), Gaps = 11/277 (3%) Query: 5 LAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGTL 64 +APM + R L E+ + ++E ++ + E R P Sbjct: 1 MAPMTKGSNLPYRRLCVELG-ARITVSEMTLAR------RLKQKRNSEFALIRRFPGEPC 53 Query: 65 VRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAK 124 VQL G P A AA G+ VD+N GCP G GA++ + P+ + + + Sbjct: 54 FGVQLAGNKPDETAWAAALVESRGADFVDINFGCPIDYFTRKGLGASIGRQPQRMRRLVE 113 Query: 125 AMREAVPAHLPVSVKVRLGW-DSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHIDW 183 A++ +V ++PV+ K+RLGW D + A A GA L VHGRT+ YR DW Sbjct: 114 AIKGSV-TNIPVTAKIRLGWNDDDRNYLQQAQAAVDGGAAALFVHGRTRNARYR-FAADW 171 Query: 184 QAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNEPR 243 AI I + +PVI NG++ SGC AVM+ R AL P + R Sbjct: 172 DAIARIVAAVPVPVIGNGDLLFPHEIAAARERSGCAAVMVARAALIKPWIFREAVDGYWD 231 Query: 244 MPWPEVVALLQKYTRLEKQG-DTGLYHVARIKQWLSY 279 + E V L ++Y L ++ + +ARI+ +L++ Sbjct: 232 ITAEERVGLYRRYVTLAREHWGDDEHGLARIRTFLNW 268 >UniRef50_Q7QCT0 AGAP002791-PA (Fragment) n=3 Tax=Culicidae RepID=Q7QCT0_ANOGA Length = 396 Score = 258 bits (661), Expect = 1e-67, Method: Composition-based stats. Identities = 77/307 (25%), Positives = 121/307 (39%), Gaps = 21/307 (6%) Query: 4 LLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGT 63 + APM R L+ DL T + K L + T Sbjct: 26 ICAPMVRYSKLEFRHLVRSYGT-DLAFTSMIMADSFCKSEKAR------LNEFTTNEEDT 78 Query: 64 LVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGA 123 + Q + GVDLNCGCP + G G+ LLK PELI Sbjct: 79 PLIAQFAANNTIDFLSASEMVY-PYVDGVDLNCGCPQRWAMAEGYGSALLKTPELIADML 137 Query: 124 KAMREAVPAHLPVSVKVRLGWDSGEK-KFEIADAVQQAGATELVVHGRTKEQGYRAEHID 182 +R +P+ VSVKVRL + K ++ ++ G T L VHGRT + + + Sbjct: 138 GTVRRNMPSTFSVSVKVRLLSSTDHKRTIDMCRQLEATGITFLTVHGRTAPEMTKV-PVH 196 Query: 183 WQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNEP 242 A+ +I+Q + IP++ANG+I+ A+Q + CD VM RG L+ P L Sbjct: 197 KDALQEIKQSIGIPMVANGDIFTLDDAEQMYLQTKCDGVMTARGILSNPALFA------- 249 Query: 243 RMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVL-NNSP 301 V ++++ + +Q DT + + + S++ + L + L Sbjct: 250 -GHSSTPVECVKRWLNICQQADTDITYQC-MHHHFSFMTESLL-TKRLRYELNNLSKEKQ 306 Query: 302 DIARAIQ 308 + IQ Sbjct: 307 KVYEFIQ 313 >UniRef50_D2VPP8 Predicted protein n=1 Tax=Naegleria gruberi RepID=D2VPP8_NAEGR Length = 427 Score = 258 bits (661), Expect = 1e-67, Method: Composition-based stats. Identities = 68/313 (21%), Positives = 119/313 (38%), Gaps = 25/313 (7%) Query: 4 LLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGT 63 + APM R L E D+ T + K + + + Sbjct: 127 VQAPMVRYSKLAFRLLCREYG-CDVVYTPMIMSDCFHKSQKARD------SDFTTHYYDS 179 Query: 64 LVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGA 123 + VQ P + G+DLNCGCP V GA L+ P+ I+ Sbjct: 180 PLVVQFAANNPTDFSLACQ-LAAPYCDGIDLNCGCPQPYVMKESLGAALVTKPQKIFDMV 238 Query: 124 KAMREAVPAHL--PVSVKVRLGWDSG----EKKFEIADAVQQAGATELVVHGRTKEQGYR 177 + + P+ VK+RL + K E+A ++ AGA+ + VHGRT +Q + Sbjct: 239 HEANNKFISGMSRPIGVKIRLHPEDDTLEFRKTIELARQIEMAGASWVTVHGRTHKQRTK 298 Query: 178 AEHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVV 237 ++ I+Q LN+PV+ NG+I+ + + +GCD VM RG L+ P L Sbjct: 299 NTKVNPDGPKTIKQILNVPVMHNGDIFTLGDSDRFAKETGCDGVMSARGLLSNPALFSGY 358 Query: 238 KYNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEA-TELFQHVRV 296 Y +Q+Y ++ Q +H+ ++ + ++ + + + Sbjct: 359 DYVP--------FECIQRYLQIAIQIGGVPFHI--LQHHIMFMLYSHHQFLSADVIEFSE 408 Query: 297 LNNSPDIARAIQA 309 + I + Sbjct: 409 CTSVASILDFFEE 421 >UniRef50_B8FH09 Dihydrouridine synthase DuS n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FH09_DESAA Length = 328 Score = 258 bits (660), Expect = 2e-67, Method: Composition-based stats. Identities = 73/312 (23%), Positives = 118/312 (37%), Gaps = 10/312 (3%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 R++LAPM G+ RE++ Y L T + R Sbjct: 11 RLILAPMAGLTHIAFREVMALYGGYGLLYTGMAGAKSVPHENPKVSTVFS-----WREKE 65 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 Q+ G P+ +A+ A R G +GVD+NCGC ++ + GA LL P+L Q Sbjct: 66 LDHTVCQIFGSVPETMAKAAERIEAEGFFGVDINCGCSARAICRFDSGAALLAKPDLAAQ 125 Query: 122 GAKAMREAVPAHLPVSVKVRLGW-DSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 +A+R+AV ++PV VK R GW D +A GA L+ H R Sbjct: 126 VVRAVRKAV--NIPVIVKFRTGWKDDPAHAVSMARLFCDEGADALIFHPRVAPDLRTRPP 183 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 W+ IG ++ + +PV NG + A + +++SGCD V +GR AL P + Sbjct: 184 -KWEYIGLVKDAVKVPVFGNGNVISLDDAAKMLSMSGCDGVALGRIALAQPWIMAQWSQG 242 Query: 241 EPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNNS 300 + + R ++ Y + L + + Sbjct: 243 MKPA-LEDYKTAGAAMASFCAKRFEPRTAFLRFMKFSPYYCANFQFGHALHKRLFAAKEI 301 Query: 301 PDIARAIQAIDI 312 +I ++ Sbjct: 302 DNIIPVLENFFQ 313 >UniRef50_Q2SJJ8 TRNA-dihydrouridine synthase n=7 Tax=Gammaproteobacteria RepID=Q2SJJ8_HAHCH Length = 349 Score = 257 bits (658), Expect = 3e-67, Method: Composition-based stats. Identities = 67/325 (20%), Positives = 115/325 (35%), Gaps = 30/325 (9%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 R +APM D R L ++ + TE V + + Sbjct: 19 RFSVAPMMDWTDRHYRYLARLLSRHTYLYTEMVTTGAIIHGDRNR--------FLDFNAE 70 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + VQL G P L E A + G ++LN GCPS V + GA L+ PE + + Sbjct: 71 EHPIAVQLGGSNPDELKECAKICEDWGYDEINLNVGCPSDRVQNNMIGACLMGYPERVAE 130 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEK---KFEIADAVQQAGATELVVHGR-------T 171 AM AV +PV+VK R+G D + V+ AG + ++H R + Sbjct: 131 CVAAMCSAVS--IPVTVKHRIGIDDQDSEEFLLNFVRTVKAAGCSTFIIHARKAILKGLS 188 Query: 172 KEQGYRAEHIDWQAIGDIRQRLN-IPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNI 230 ++ + + I+Q + +I NG I ++ + D VMIGR A Sbjct: 189 PKENREIPPLIYPRAYLIKQTFPELEIIINGGIKTMDESESHLQE--VDGVMIGREAYQR 246 Query: 231 PNLSRVVKYNEPRMPWPEVV--ALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEAT 288 P + V + P P + ++ ++ V + + L Sbjct: 247 PWMLADVDHRLFHCPPPSFSATDIGYQFLEYIERNYQNGVAVWHMARHALGLFHGQKGGK 306 Query: 289 ELFQ-----HVRVLNNSPDIARAIQ 308 + + ++ + A+ Sbjct: 307 QFRRYLSENAIKRTASPTVFRDALD 331 >UniRef50_B9HRE5 Predicted protein (Fragment) n=11 Tax=Eukaryota RepID=B9HRE5_POPTR Length = 362 Score = 257 bits (656), Expect = 6e-67, Method: Composition-based stats. Identities = 70/299 (23%), Positives = 123/299 (41%), Gaps = 25/299 (8%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 ++ LAP+ V + R + + D+ E + L E R S Sbjct: 16 KLYLAPLTTVGNLPFRRVCKALG-ADVTCGEMAMCTNLLQGQA------SEWALLRRHSS 68 Query: 62 GTLVRVQLLGQFPQWLAENAARA-VELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 L VQ+ G +P + E +D+N GCP V G G++LL P + Sbjct: 69 EDLFGVQICGAYPDTVTRTVELIDQECTVDFIDINMGCPIDIVVNKGAGSSLLTKPMRMK 128 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKFE-IADAVQQAGATELVVHGRTKEQGYRAE 179 +A V P++VKVR G+ G+ + + + + + GA+ + +HGR+++Q Y + Sbjct: 129 SIIEATSGTVEK--PITVKVRTGYFEGKSRIDSLIVDIGKWGASAVTIHGRSRQQRYS-K 185 Query: 180 HIDWQAIGDIRQRL--NIPVIANGEIWDWQSAQQCMAI-SGCDAVMIGRGALNIPNLSRV 236 DW I ++ ++ V+ NG+++ + + + MI RGAL P + Sbjct: 186 LADWDYIYQCARKAPDSLQVLGNGDVFSFVDWNNHKSDCPELSSCMIARGALIKPWIFTE 245 Query: 237 VKY-NEPRMPWPEVVALLQKYTR--LEKQGDTGL-----YHVARIKQWLSYLRKEYDEA 287 +K + E + +L+ Y R LE G H + +WLSY + Sbjct: 246 IKEQRHWDISSGERLNILKDYVRSGLEHWGSDTKGVETTRHF--LLEWLSYTCRYVPVG 302 >UniRef50_Q6AKJ6 Putative uncharacterized protein n=1 Tax=Desulfotalea psychrophila RepID=Q6AKJ6_DESPS Length = 354 Score = 256 bits (655), Expect = 7e-67, Method: Composition-based stats. Identities = 74/313 (23%), Positives = 132/313 (42%), Gaps = 14/313 (4%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 + LAPM G+ S +R L+ ++ L TE + TP Sbjct: 44 LSLAPMVGLSHSALRSLIADLGGCGLFYTEMLAARRLPHENPAV------SSYLHTTPCE 97 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 + QL +++A + LG GVD+N GCP+ +V G GA L +D + + Sbjct: 98 RPLIYQLFIADVKYVAPALDKIHRLGGDGVDINLGCPAPSVRRGGAGAALAEDWDRVRDI 157 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGE-KKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 + R L +S K+R+G E + ++ G L VH R + + + Sbjct: 158 VSSARRH--TDLTLSAKIRVGHVGKEAHLLDFCKMLEAEGVDLLAVHARYHGEKFCRKP- 214 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNE 241 WQ + I ++L+IP+ ANG I+ A++C+ +SG +M+GRGA+ P L + Sbjct: 215 RWQLLAPICEQLDIPIFANGGIFSVDDARRCLELSGAAGLMLGRGAVERPWLFNEIAREV 274 Query: 242 PRMPWP----EVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVL 297 + P V + ++ + + + RIK++ Y+ K + L V+ Sbjct: 275 YGLDLPVAESRPVEIYFRFVQKMVEIFAPERQLGRIKEFTHYIAKNHQFGHHLASAVQKS 334 Query: 298 NNSPDIARAIQAI 310 + + +A + Sbjct: 335 HTVEEAVQAAEDF 347 >UniRef50_UPI00015B403F PREDICTED: similar to MGC79829 protein n=1 Tax=Nasonia vitripennis RepID=UPI00015B403F Length = 346 Score = 256 bits (655), Expect = 7e-67, Method: Composition-based stats. Identities = 81/315 (25%), Positives = 130/315 (41%), Gaps = 26/315 (8%) Query: 1 MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTP 60 M + APM R L+ + D D+C T + + K S Sbjct: 14 MTKVCAPMVRYSKLPFRTLVRKY-DCDICFTPMILADSFVQSSKARD------SEFSTNE 66 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 + + VQ + E V S GVDLNCGCP + G GA LL P+L+ Sbjct: 67 GDSPLIVQFAAKEVDDFVEATE-MVAPYSNGVDLNCGCPQRWALKDGYGADLLTKPQLVK 125 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH 180 + +R +P VSVK+R+ +K E + A++ AG + L VH RT + E Sbjct: 126 ELVSNVRNRIPKPFTVSVKIRI-LKDIKKTIEFSRAIEHAGVSFLTVHARTPDMRN--EP 182 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 ID ++ +R +++P+IANG + ++ A+ S C+ VM+ G L P + K Sbjct: 183 IDLDSLKLVRSCVHLPMIANGNVRSFEDAKTLYEESKCNGVMVAGGILTNPAIFSGYKNT 242 Query: 241 EPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLR-KEYDEATELFQHVRVLNN 299 V +Q + + T + L ++ K + +L VLNN Sbjct: 243 P--------VECIQDWLDITSTMSTQFMC---MHHHLVFMLEKVLTKKEKL--VFNVLNN 289 Query: 300 SPDIARAI-QAIDIE 313 D+ + + DI+ Sbjct: 290 KSDVYDFLKERFDIQ 304 >UniRef50_Q72EB7 Dihydrouridine synthase family protein n=4 Tax=Desulfovibrio RepID=Q72EB7_DESVH Length = 332 Score = 256 bits (655), Expect = 8e-67, Method: Composition-based stats. Identities = 79/310 (25%), Positives = 119/310 (38%), Gaps = 13/310 (4%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 + LAP+ GV RE++ + L T R Sbjct: 12 LWLAPLAGVGHVAFREVIDNLGGCGLLFTGMCNARAVPTENPAR-----SNAFTWRAEEL 66 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 QL G P +AE A R G +GVD+N GC + G GA LL+D E + Sbjct: 67 ERCVCQLFGADPSEMAEAARRVEAEGFFGVDINMGCSVAAIVRRGCGADLLRDEERAVRM 126 Query: 123 AKAMREAVPAHLPVSVKVRLGW-DSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 +++R AV PV VK R GW + +A + AGA LV H R + Sbjct: 127 VESVRRAV--DCPVLVKFRTGWSPDPQGAVALARRFEDAGADALVFHPRVAPDRRTRPPL 184 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRV----V 237 I +++ + IPV+ NGE++ A + +GCD + +GR AL P + V Sbjct: 185 R-HHIRLVKEAVAIPVLGNGEVFTPGDAASMLETTGCDGISLGRIALGRPWVFAAWTGLV 243 Query: 238 KYNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVL 297 N P L LE++ Y K++L Y + L + Sbjct: 244 DDNPASNPDLWRDIPLALLDALERRHADRKYAARLFKKFLLYFIANFTYGNSLRGPMLKG 303 Query: 298 NNSPDIARAI 307 ++ D+ A+ Sbjct: 304 DDPADLRTAL 313 >UniRef50_A9KG09 NIFR3-like protein n=6 Tax=Coxiella burnetii RepID=A9KG09_COXBN Length = 353 Score = 256 bits (654), Expect = 1e-66, Method: Composition-based stats. Identities = 74/329 (22%), Positives = 122/329 (37%), Gaps = 33/329 (10%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 R+ +APM G D R + +++ + L TE V L + + +P Sbjct: 30 RISIAPMMGCTDRHFRMFMRQISRHVLLYTEMVTTGALLKG--------KQWRCLDYSPE 81 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + +Q+ G PQ LA A A E G ++LN GCPS V GA LLK+ EL+ Sbjct: 82 EHPLALQVGGSDPQSLALCARLAEEKGFDEINLNVGCPSGRVTAGRFGACLLKEAELVAD 141 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKKF---EIADAVQQAGATELVVHGR-------T 171 AM V ++PVSVK R G D + V +AG ++H R + Sbjct: 142 CVAAMSAEV--NIPVSVKTRTGVDDQDSYEHLYHFVKTVAEAGCRIFIIHARKAWLKGLS 199 Query: 172 KEQGYRAEHIDWQAIGDIRQRLN-IPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNI 230 + + + + ++Q + +I NG I ++ + D VMIGR A Sbjct: 200 PAENRTVPPLAYPMVYQLKQDFPGLEIIINGGIKTIEAINDHLRE--VDGVMIGREAYAN 257 Query: 231 PNLSRVVKYNEPRMPWPEVVA----------LLQKYTRLEKQGDTGLYHVARIKQWLSYL 280 P + V +L +Y + + + + L+ L Sbjct: 258 PLFCAAFDDLSKPVFSLGVADKKQTPLTPKRVLLRYLPYMAKQLANGVPLYAMTRHLNGL 317 Query: 281 RKEYDEATELFQHVRVLNNSPDIARAIQA 309 + A + + + AI+ Sbjct: 318 FQGQPGAKKWRRFLHENTRREGPIAAIEE 346 >UniRef50_Q9VJ06 CG10495 n=12 Tax=Drosophila RepID=Q9VJ06_DROME Length = 396 Score = 255 bits (653), Expect = 1e-66, Method: Composition-based stats. Identities = 72/306 (23%), Positives = 120/306 (39%), Gaps = 16/306 (5%) Query: 6 APMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGTLV 65 APM R L+ +N L T + K S + Sbjct: 28 APMVRYSKLEFRRLVR-LNGVQLAFTPMMISDSINNSEKARQ------NEFSTGADDQPL 80 Query: 66 RVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKA 125 Q + P +A G+DLNCGCP G G +L+ PEL++Q + Sbjct: 81 IAQFAAKDPTEFVTSAQLIY-PYVDGIDLNCGCPQSWAMAKGYGCGMLRQPELVHQVVQE 139 Query: 126 MREAVPAHLPVSVKVRL--GWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHIDW 183 +R +P VSVK+RL G +S ++ ++A ++ AG T L +HGRT Q + + +D Sbjct: 140 VRRTLPGDFSVSVKMRLLGGEESLQRTIDLARQLESAGVTFLTLHGRTPAQKHSKDTLDI 199 Query: 184 QAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNEPR 243 A+ +RQ L IP+I NG + ++ A +G VM RG L P L + Sbjct: 200 PAMSQVRQSLQIPLIVNGNVESYRDACDMHEQTGAAGVMAARGLLANPALFN----SNYP 255 Query: 244 MPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNNSPDI 303 ++ +Q++ + L L+++ +L L + + Sbjct: 256 DGKTTPLSCVQQWLDIASAAGDNLL-FQCFHHHLTFMY-SAQMKRDLRVQFNSLGSKEQV 313 Query: 304 ARAIQA 309 ++ Sbjct: 314 VDFLKE 319 >UniRef50_A6DU09 Dihydrouridine synthase family protein n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DU09_9BACT Length = 334 Score = 255 bits (653), Expect = 1e-66, Method: Composition-based stats. Identities = 76/323 (23%), Positives = 133/323 (41%), Gaps = 17/323 (5%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDY---DLCITEFVRVVDQLLP---VKVFHRICPELQNA 56 + LAPME V D++ R++L E + +EF+ P KV HR + Sbjct: 13 IALAPMEDVTDTVFRQILLETAQPKNLQVVFSEFISTDGLCHPIGHDKVIHRFLISDEER 72 Query: 57 SR-TPSGTLVRVQLLGQFPQWLAENAARAVEL-GSWGVDLNCGCPSKTVNGSGGGATLLK 114 + Q+ G+ P +E ++ V+ GVD+N GCP + GG + L+ Sbjct: 73 KLLKEKNIKIVAQVWGKNPDKFSEAISKYVDPEVFDGVDINMGCPVAKIVKQGGCSALIN 132 Query: 115 DPELIYQGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQ 174 PE+ + A + A LPVSVK R G + K E + + +++HGRT++Q Sbjct: 133 TPEIAKELVLAAKAA--TKLPVSVKTRTGI-TAHKTEEWMTHLLEVEPAAIILHGRTQKQ 189 Query: 175 GYRAEHIDWQAIG---DIRQRL--NIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALN 229 W I +R RL +IP NG++ + A Q D MIGRG + Sbjct: 190 QSEG-LASWDEIAKGARVRDRLKPHIPFWGNGDVRSIEQAHQLCQEHKLDGAMIGRGVFH 248 Query: 230 IPNLSRVVKYNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATE 289 P + + +P E +ALL ++ L + ++++ + + A Sbjct: 249 NPWIFNTDLLGDNVLPPEEKIALLWRHASLYTSFWGSQKNFLTLRRFFKIYAQGFPGANA 308 Query: 290 LFQHVRVLNNSPDIARAIQAIDI 312 + ++ ++ ++ Sbjct: 309 FRSEIMQTKKLDEVRALLEKHEL 331 >UniRef50_Q9HGN6 tRNA-dihydrouridine synthase 1 n=1 Tax=Schizosaccharomyces pombe RepID=DUS1_SCHPO Length = 399 Score = 255 bits (653), Expect = 1e-66, Method: Composition-based stats. Identities = 67/311 (21%), Positives = 122/311 (39%), Gaps = 16/311 (5%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 + +LAPM + R L + DLC + +++ P Sbjct: 19 KRILAPMVDQSELPWRILARR-SGADLCYSPMFHSRLFGESEDYRNKVFST----RTIPE 73 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + +Q G P+ + + A A VD+N GCP G+ L ++ LI Sbjct: 74 ERPLIIQFCGNDPEIMLKAAKIA-APYCDAVDVNLGCPQGIAKKGKYGSFLQENWNLIES 132 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQ-GYRAEH 180 + + +PV+ K+R+ + +K + A + +AGA+ L VHGR +EQ G+ Sbjct: 133 IITKLHTELS--IPVTAKIRI-FPDPQKTLDYAKMILKAGASILAVHGRLREQKGHFTGI 189 Query: 181 IDWQAIGDIRQRLN--IPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK 238 DW+ I +R+ L + ANG I Q +C+ +G D V+ G+L P + Sbjct: 190 ADWEQIQMLRKNLPSETVLFANGNILHAQDIDRCIKYTGVDGVLSAEGSLYNPRIFLPPS 249 Query: 239 YNEPRMPWPEVVALLQKYTRLEKQGDTG--LYHVARIKQWLSYLRKE-YDEATELFQHVR 295 +P + + ++Y + ++ ++ IK L L + T++ + Sbjct: 250 SPL-MTLYPRIDDMCEEYLNIIREFKLESDYSSLSAIKGHLFKLMRPLLSIHTDIRSKLA 308 Query: 296 VLNNSPDIARA 306 D Sbjct: 309 QGCTPRDFETF 319 >UniRef50_B8C4H3 Predicted protein (Fragment) n=1 Tax=Thalassiosira pseudonana RepID=B8C4H3_THAPS Length = 333 Score = 255 bits (651), Expect = 2e-66, Method: Composition-based stats. Identities = 72/317 (22%), Positives = 116/317 (36%), Gaps = 19/317 (5%) Query: 6 APMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGTLV 65 APM D R L N LC T + + K + + + Sbjct: 1 APMVDASDLPYRLLTRRYNT-SLCFTPMIHAKMFIDKPKYREKF---WKIEGMPSQDRPL 56 Query: 66 RVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDP--ELIYQGA 123 Q G L + E GVD+NCGCP GA L+++ + I + Sbjct: 57 IAQFCGHDKNVLLQAMKVL-EPHVDGVDINCGCPQNIAKRGRYGAFLMEEDNGDKIVEIV 115 Query: 124 KAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGY-RAEHID 182 + + + ++PVSVK+R+ E + + AGA L +HGRT+ Q + Sbjct: 116 QHLTANL--NVPVSVKLRILPTGIEDSLALYKRLVDAGAAMLTIHGRTRFQNKVDTGTAN 173 Query: 183 WQAIGDIRQRL--NIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRV--VK 238 W I + + +PVIANG I + ++C ++G D VM G L P L V+ Sbjct: 174 WDYIRQVVDLVGDRVPVIANGNICNLDEVRKCFEVTGVDGVMSSEGILEYPPLFTETNVE 233 Query: 239 YNEPRMPWPEVVALLQKYTRLEKQG----DTGLYHVARIKQWLSYLRK-EYDEATELFQH 293 + P + + + Y L K+ + I+ L + T++ Sbjct: 234 STGFKRTGPGRLQMAEDYLELCKEYPSEEGGQGSGLKCIRAHLHRFLHADLQVHTKIRDA 293 Query: 294 VRVLNNSPDIARAIQAI 310 V A+ I Sbjct: 294 VVKTFTLEAAVEAVSMI 310 >UniRef50_UPI000179183B PREDICTED: similar to tRNA-dihydrouridine synthase 4-like (PP35) n=1 Tax=Acyrthosiphon pisum RepID=UPI000179183B Length = 350 Score = 255 bits (651), Expect = 2e-66, Method: Composition-based stats. Identities = 73/306 (23%), Positives = 119/306 (38%), Gaps = 28/306 (9%) Query: 4 LLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGT 63 + APM R+L+ + DLC T + + K Sbjct: 20 ICAPMVRYSRLQFRKLIRMY-ECDLCFTPMIMADCYVKSAKARA------HEFQTDTDDR 72 Query: 64 LVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGA 123 + VQ + + GVDLNCGCP + G GA LLK+PE+I Sbjct: 73 PLIVQFGANNSSDFVNASNLII-PYCDGVDLNCGCPQRWALNEGYGAQLLKNPEIIKDCV 131 Query: 124 KAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHIDW 183 + +R +P + +SVK+RL D + ++ ++ G + + VHGRT Q + E ID Sbjct: 132 RQLRNHLPTNKTISVKLRL-LDDHRQSVDLCQQIEATGVSFITVHGRTALQ--KNEPIDQ 188 Query: 184 QAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNEPR 243 + + I + +++PVI NG+I + A +GC +M RG L+ P L Sbjct: 189 ECLKLINESVSVPVILNGDIKNLSDAITMQEYTGCRGMMSARGILHNPGLFA----GYQT 244 Query: 244 MPWPEVVALLQ-KYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNNSPD 302 P V L K+T L ++ + T + L + D Sbjct: 245 TPLSAVQDWLNIKHTNFLWFH-----------HHLVFMCERLLPKTA-RKTFNQLRTASD 292 Query: 303 IARAIQ 308 + ++ Sbjct: 293 VVSFLE 298 >UniRef50_A6GHV6 Dihydrouridine synthase family protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GHV6_9DELT Length = 321 Score = 255 bits (651), Expect = 2e-66, Method: Composition-based stats. Identities = 121/309 (39%), Positives = 167/309 (54%), Gaps = 7/309 (2%) Query: 8 MEGVLDSLVRE-LLTEVND---YDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGT 63 M+GV D RE L LC++EFVRV Q + +VF R CPEL +T +G Sbjct: 1 MDGVTDGSYRECLTALFGGRSGISLCVSEFVRVTRQPVVERVFLRHCPELARGGKTRAGV 60 Query: 64 LVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGA 123 V VQLLG P W+A A AV LG+ G+DLN GCP+KTVN S GGATLLKDP + Sbjct: 61 PVFVQLLGGEPHWMARAAETAVALGAPGIDLNFGCPAKTVNSSDGGATLLKDPCRVEAVT 120 Query: 124 KAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHIDW 183 +A+R AVPA LPV+VK+R+GW+ EIA A + GA+ L +HGRT+ Q Y+ +D+ Sbjct: 121 RAVRAAVPAELPVTVKIRVGWEDPSPVVEIARAAEAGGASWLTIHGRTRRQLYK-PPVDY 179 Query: 184 QAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY-NEP 242 +AIG + +++ V+ANG+++ S + SGC A MIGRGA+ P L + Sbjct: 180 EAIGRAQAAVSMAVVANGDLFGVPSLFEAAQRSGCTAFMIGRGAMGRPELFARARGTQRA 239 Query: 243 RMPWPEVVALLQKYTR-LEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNNSP 301 + ALL Y L G + R+KQWL + F+ + L Sbjct: 240 ALDPRPFEALLDVYADTLLASGANERNTLGRLKQWLRMAAMLRADMKLAFEQCKRLQTLD 299 Query: 302 DIARAIQAI 310 + ++ I Sbjct: 300 EARAKLREI 308 >UniRef50_B7G230 Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7G230_PHATR Length = 545 Score = 254 bits (650), Expect = 2e-66, Method: Composition-based stats. Identities = 75/303 (24%), Positives = 132/303 (43%), Gaps = 27/303 (8%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 +V +AP+ V + R ++ + D+ E + L E R P Sbjct: 188 KVYVAPLTTVGNLPFRRIMKKFG-ADITCGEMAVATNLLSGQ------SSEWALLKRHPE 240 Query: 62 GTLVRVQLLGQFPQWLAENAARAV-ELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 + VQ+ +P A E+ VDLN GCP V G GA L+ + + Sbjct: 241 EDIFGVQIAAGYPDVFARTCELIENEMNVDFVDLNLGCPLDIVCNKGSGAALMMRDKRLR 300 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWD-SGEKKFEIADAVQQA---GATELVVHGRTKEQGY 176 + + E + P+S+K+R GW+ + + +Q G + +++HGR++ Q Y Sbjct: 301 SSVEGILETLTC--PISIKMRTGWEMTKPFAHNLVQKIQSWGLDGISAVMIHGRSRLQRY 358 Query: 177 RAEHIDWQAIGDIRQRLN-----IPVIANGEIWDWQSAQQCMAISGCDAV-MIGRGALNI 230 A+ DW I + + + IPVI NG+I+ +Q ++ +A G ++ M+ RGAL Sbjct: 359 -AKEADWDYISMVAKSQDMSLTTIPVIGNGDIFSYQDFEEKIAREGVNSCAMLARGALIK 417 Query: 231 PNLSRVVKY-NEPRMPWPEVVALLQKYTR--LEKQGDT--GLYHVARI-KQWLSYLRKEY 284 P L +K + E + +L+ + R +E G G+ + R +WLS+L + Sbjct: 418 PWLPTEIKERRHWDISASERLDILKDFARFGMEHWGTDQQGINNCRRFLLEWLSFLHRYC 477 Query: 285 DEA 287 Sbjct: 478 PVG 480 >UniRef50_A4S141 Predicted protein (Fragment) n=1 Tax=Ostreococcus lucimarinus CCE9901 RepID=A4S141_OSTLU Length = 307 Score = 254 bits (649), Expect = 4e-66, Method: Composition-based stats. Identities = 78/306 (25%), Positives = 120/306 (39%), Gaps = 30/306 (9%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 R +APM + REL L T + + K I S + Sbjct: 17 RYHVAPMVDQSELAFRELCKRYG-ATLGYTPMIHARLFVESPKYRREI------FSTSTR 69 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + Q P+ L A GVD+N GCP + GA L+ D + + Sbjct: 70 DRPLLAQFCANDPEILLRAATMI-APYCDGVDINFGCPQRIAKRGNYGAFLMDDWKTVEA 128 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEH- 180 + + E +P +PV+ K+R+ +D E + A V+ AGA + VHGRT+EQ A+ Sbjct: 129 LIRKLDEELP--VPVTAKIRV-YDDLETTLKYAKMVEAAGAQIVAVHGRTREQKRCADIR 185 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRV---- 236 +W I I+ L +PV+ANG+I A+ C+ +G D V+ L+ P L Sbjct: 186 ANWAYIRAIKDALKVPVLANGDIRSLAEARACLEATGADGVLSAEPLLSNPALFSDPPFY 245 Query: 237 --VKYNEPRMPWPEV--VALLQKYTRLEKQGDTG----LYHVARIKQWLSYLRKEYDEAT 288 +P V V L+ +Y + K T HV ++ E T Sbjct: 246 AAPTDGYAPIPLDGVAAVDLMIEYFDICKSYTTSFSYIRGHVWKLVGHW------MSEFT 299 Query: 289 ELFQHV 294 +L Sbjct: 300 DLRDEF 305 >UniRef50_Q4DCG2 Putative uncharacterized protein n=2 Tax=Trypanosoma cruzi RepID=Q4DCG2_TRYCR Length = 529 Score = 253 bits (648), Expect = 5e-66, Method: Composition-based stats. Identities = 65/321 (20%), Positives = 124/321 (38%), Gaps = 19/321 (5%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 +++LAP+ V + R + D+ ++ V + K E R S Sbjct: 171 KLVLAPLTTVGNLPFRRVCKSYG-ADITVSSMSLVHNLNRLQK------GEWSLLRRHES 223 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGS--WGVDLNCGCPSKTVNGSGGGATLLKDPE-L 118 + +Q+ PQ A G +D+NCGCP + + +G G L + + Sbjct: 224 EDVFGLQIAVSQPQSAQTWAKAIEASGYSYDFIDINCGCPVQMIMSAGCGCGLWERRDNR 283 Query: 119 IYQGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRA 178 + ++ + + + ++ G +S E + GA + +HGR + Q Y Sbjct: 284 LRDIVSSLVQHQSKPVSIKCRIGAGANSSASLHEKIGDYEGWGADAVTIHGRFRAQRY-T 342 Query: 179 EHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMA-ISGCDAVMIGRGALNIPNLSRVV 237 + +W+ I R ++PVI NG+I+ ++ + MIGRGAL P + + Sbjct: 343 KLANWEYIDSCAARTSLPVIGNGDIFSYEDIIDHRERYPHVSSYMIGRGALIKPWIFEEI 402 Query: 238 KYNEP-RMPWPEVVALLQKYTR--LEKQGDTGLYHV---ARIKQWLSYLRKEYDEATELF 291 K +P + E +L+ + L G + + +WLS+L + L Sbjct: 403 KQEQPRDISSQERFEMLRSFCNYGLSHWGSDERGVLTTRRFLCEWLSFLCRYVPLG-LLE 461 Query: 292 QHVRVLNNSPDIARAIQAIDI 312 + +N P ++ Sbjct: 462 CPPQRINERPPHYEGRDELET 482 >UniRef50_UPI000186DA49 tRNA-dihydrouridine synthase, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186DA49 Length = 332 Score = 253 bits (646), Expect = 7e-66, Method: Composition-based stats. Identities = 81/305 (26%), Positives = 133/305 (43%), Gaps = 23/305 (7%) Query: 4 LLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGT 63 + APM R L+ + D DLC T + + K + + + + + Sbjct: 15 VCAPMVRYSKLEFRSLVRQY-DCDLCFTPMIMADSFIKSEKAR------INEFTTSSNDS 67 Query: 64 LVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGA 123 V VQ +E A V S GVDLNCGCP + G GA LL +PE I Sbjct: 68 PVIVQFAANNTFDFSEAAK-LVFPFSDGVDLNCGCPQRWAMKIGIGAQLLSEPETIKDIV 126 Query: 124 KAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHIDW 183 ++ + + VSVK+RL + + ++ +++ G T L +HGRTKEQ +E ++ Sbjct: 127 LNVKNQISCNYSVSVKLRL-LNDIKSTVDLCKKLEKTGVTFLTIHGRTKEQR--SEPVNI 183 Query: 184 QAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNEPR 243 AI DI + IP+IANG++ Q AQ ++GC VM RG L P+L + Sbjct: 184 AAIKDIVDSVQIPIIANGDVKTLQDAQLLQQLTGCQGVMSARGLLQNPSLFQGYNETP-- 241 Query: 244 MPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNNSPDI 303 + ++K+ + + H L ++ ++ ++ + LNN D Sbjct: 242 ------LECVKKWVDISLNSN---IHFTTFHHHLVFMLEKILP-KKIRRKFNCLNNYEDP 291 Query: 304 ARAIQ 308 + + Sbjct: 292 FKLYE 296 >UniRef50_Q9XVN8 Protein F36A2.2, partially confirmed by transcript evidence n=2 Tax=Caenorhabditis RepID=Q9XVN8_CAEEL Length = 527 Score = 252 bits (644), Expect = 1e-65, Method: Composition-based stats. Identities = 75/314 (23%), Positives = 120/314 (38%), Gaps = 30/314 (9%) Query: 4 LLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGT 63 +LAPM + R + L T + + + + + Sbjct: 76 VLAPMVDQSELAFRMFTRKYG-AQLTFTPMIHAHLFVNDGTYRR------NSLALVKADR 128 Query: 64 LVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGA 123 + VQ A R VE GVDLN GCP G+ L + +LI + Sbjct: 129 PLVVQFCANKVDTFL-AACRLVEDVCDGVDLNLGCPQMVAKRGRYGSWLQDEVDLICEMV 187 Query: 124 KAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQ-GYRAEHID 182 A+R+ LP+S K+R+ D ++ E A + AGAT L VHGRT++ G D Sbjct: 188 SAVRDYC--RLPISCKIRV-RDDRQQTVEYAKRLVDAGATMLTVHGRTRDMKGAETGLAD 244 Query: 183 WQAIGDIRQRL--NIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 W I D+ + + +PV+ANG I ++CM +G A+M G L P + + Sbjct: 245 WSRIRDVVEAVGSRVPVMANGNIQFPGDVERCMQATGAVAIMSAEGLLYNPLIFDDANAH 304 Query: 241 EPRMPWPEVVALLQKYTRLEKQGDTG----LYHVARIKQWLSYLRKEYDEATELFQHVRV 296 + + +Y K+ + G HV RI E +L V + Sbjct: 305 ------VDTWKIAAEYLEYAKKFNAGTSAIRAHVFRICHH------SLLEYEDLRMRVSL 352 Query: 297 LNNSPDIARAIQAI 310 + D ++ + Sbjct: 353 EHRIEDFENIVEEL 366 >UniRef50_B8GW86 tRNA-dihydrouridine synthase n=7 Tax=Alphaproteobacteria RepID=B8GW86_CAUCN Length = 335 Score = 252 bits (644), Expect = 1e-65, Method: Composition-based stats. Identities = 84/326 (25%), Positives = 143/326 (43%), Gaps = 23/326 (7%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 RV +APM GV D RE + + TE V + R + T Sbjct: 15 RVWIAPMTGVSDLPFRETASALGAP-YVATEMVASAEFAKGRPDVVRRAAVGEGLPLT-- 71 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGG-GATLLKDPELIY 120 +QL+G+ ++A+ A A E G+ +DLN GCP+K V G+ L+++P+L Sbjct: 72 ----VIQLVGRDVDFMAQGARMAQEAGAEIIDLNFGCPAKEVAAGAACGSALMREPDLAE 127 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWD-SGEKKFEIADAVQQAGATELVVHGRTKEQGYRAE 179 +PV+VK+RLGWD +IA + AGA + VHGRT+ Q Y+ Sbjct: 128 A--LVAAAVEAVDVPVTVKMRLGWDIDCLNAPDIARRAEAAGAKAVTVHGRTRNQFYKG- 184 Query: 180 HIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY 239 DW A+ ++Q +++PV+ NG+I D ++A+Q + SG D VMIGRG P ++ ++ Sbjct: 185 VADWTAVAAVKQAVSVPVLVNGDIVDGETARQALEQSGADGVMIGRGVYGRPWIAGAIEA 244 Query: 240 -----NEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYD------EAT 288 E +A+ + R + ++ L+ + Sbjct: 245 ALEGRGFQEPEAEERLAIAITHFRRSLSFYGERLGLKMFRKHLASYIEAAPWPETAEARR 304 Query: 289 ELFQHVRVLNNSPDIARAIQAIDIEK 314 + L + + A++ + + + Sbjct: 305 AARASLCRLEDPAAVESALRTLWLAE 330 >UniRef50_B1XI00 Dihydrouridine synthase A n=8 Tax=Chroococcales RepID=B1XI00_SYNP2 Length = 344 Score = 251 bits (643), Expect = 2e-65, Method: Composition-based stats. Identities = 64/305 (20%), Positives = 116/305 (38%), Gaps = 25/305 (8%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 + +APM D R L+ + L TE + + + + + Sbjct: 14 LSVAPMMDRTDRHFRYLMRRITRRTLLYTEMITTQAIIHGDRP--------KLLDFDAAE 65 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 + +QL G P+ LAE A + G ++LN GCPS V GA L+ PEL+ Sbjct: 66 HPISLQLGGDNPKELAECAKVGEDWGYDEINLNVGCPSPRVQQGNFGACLMTQPELVADC 125 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQ---QAGATELVVHGR-------TK 172 AM+ AV ++PV+VK R+G D + ++ ++ G VH R + Sbjct: 126 VAAMQGAV--NIPVTVKHRIGVDEQDSYADLCRFIEIVSATGCDRFSVHARKAWLQGLSP 183 Query: 173 EQGYRAEHIDWQAIGDIRQRLNIPVI-ANGEIWDWQSAQQCMAISGCDAVMIGRGALNIP 231 ++ + + + ++Q I NG I + Q + + DAVM+GR A + P Sbjct: 184 KENRTVPPLRYADVYRLKQDFPHLWIEINGGITTLEHIQTHL--TQVDAVMVGRAAYDNP 241 Query: 232 NLSRVVKYNEPRMPWPE--VVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATE 289 L V + ++++ ++ + I + + L Sbjct: 242 YLFATVDRDIYGEAIQPKSRHEIVEEMLPYIERATKAGVKLHSISRHMLSLFLGQPGTKA 301 Query: 290 LFQHV 294 + + Sbjct: 302 WKRFI 306 >UniRef50_Q8CWK7 tRNA-dihydrouridine synthase A n=32 Tax=Gammaproteobacteria RepID=DUSA_VIBVU Length = 326 Score = 251 bits (643), Expect = 2e-65, Method: Composition-based stats. Identities = 71/307 (23%), Positives = 123/307 (40%), Gaps = 27/307 (8%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 R+ +APM D R + L TE + + F + Sbjct: 6 RLSVAPMLDWTDRHCRYFHRLMTKETLLYTEMITTGAIIHGKGDF---------LAYNQE 56 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 V +QL G PQ LA A A E G V+LN GCPS V GA L+ +P+L+ Sbjct: 57 EHPVALQLGGSNPQDLATCAKLAAERGYDEVNLNVGCPSDRVQNGRFGACLMAEPQLVAD 116 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKKF---EIADAV-QQAGATELVVHGR------- 170 AM+E V +PV+VK R+G D + + V ++ G + +H R Sbjct: 117 CVAAMKEVV--DIPVTVKTRIGIDDQDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGL 174 Query: 171 TKEQGYRAEHIDWQAIGDIRQRLNIPVIA-NGEIWDWQSAQQCMAISGCDAVMIGRGALN 229 + ++ +D+ +++ + IA NG + + A++ + D VMIGR A Sbjct: 175 SPKENREIPPLDYPRAYQLKKDFSHLTIAINGGVKSLEEAKEHLQ--HLDGVMIGREAYQ 232 Query: 230 IPNLSRVVKYNE--PRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEA 287 P L V + P + ++++ +Q ++ + + + L + A Sbjct: 233 SPYLLASVDQELFGSQSPIKKRRQIVEEMYPYIEQQLANGAYLGHMTRHMLGLFQNMPGA 292 Query: 288 TELFQHV 294 + +H+ Sbjct: 293 RQWRRHI 299 >UniRef50_D2VK62 Dihydrouridine synthase, DuS n=1 Tax=Naegleria gruberi RepID=D2VK62_NAEGR Length = 388 Score = 251 bits (642), Expect = 2e-65, Method: Composition-based stats. Identities = 69/337 (20%), Positives = 134/337 (39%), Gaps = 37/337 (10%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRT-- 59 +V+LAPM V R L D+ +E + + V++ + Sbjct: 35 KVILAPMVRVNGLPFRRLAARFG-ADIVYSEELVDKKLIKCKPVYNEKLKTIDYIGHDGN 93 Query: 60 -----------------PSGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKT 102 +QL P+ + A ++ G +D+N GCP K Sbjct: 94 IVYQVEVVDKESDSPTASQKVPTVLQLGTSSPELALQVAELMID-GYDAIDVNMGCPKKF 152 Query: 103 VNGSGGGATLLK--DPELIYQGAKAMREAV--PAHLPVSVKVRLGWDSGEKKFEIADAVQ 158 G G+ LL+ + E + +A+ + + PV+ K+RL D+ E E+ + +Q Sbjct: 153 SVKGGMGSALLRPENQENAFAILRALVKGIQEKHGKPVTCKIRL-LDTTENTIELYEKLQ 211 Query: 159 QAGATELVVHGRTKEQGYRAEHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGC 218 G T + VH R Q R + + + + +P+IANG+++ + + ++GC Sbjct: 212 ATGVTAICVHARYIPQRPREK-AHSHLVDPVSKITKVPIIANGDVFKPEDIDRIKDLTGC 270 Query: 219 DAVMIGRGALNIPNLSRVVKYNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLS 278 +VMI RGA+ ++ R + + + ++ + + YH K L Sbjct: 271 SSVMIARGAMWNLSIFRK------EKVLLDKLVVAKELLDELIKYN---YHSGLSKYILK 321 Query: 279 YLRKEYDEATELFQHVRVLNNSPDIARAIQAIDIEKL 315 + + + T+L++ + D+ +A+ D E L Sbjct: 322 RMFETHA-KTKLYERLAKCKGFDDLHKALHFNDNEDL 357 >UniRef50_A3VWV8 TRNA-dihydrouridine synthase, putative n=4 Tax=Rhodobacterales RepID=A3VWV8_9RHOB Length = 339 Score = 251 bits (641), Expect = 3e-65, Method: Composition-based stats. Identities = 93/307 (30%), Positives = 133/307 (43%), Gaps = 21/307 (6%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 V LAPM G+ D R ++ L ++E V + + T Sbjct: 13 VFLAPMAGITDLPFRTVVAGFG-AGLVVSEMVASQEMVQAKPSARGKAELGFGIENT--- 68 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGAT----LLKDPEL 118 VQL G P W+AE A + G+ +D+N GCP+K V + G L++D + Sbjct: 69 ---SVQLAGCDPHWMAEAARVVADHGARIIDINMGCPAKKVVSAAGAGASGSALMRDLDH 125 Query: 119 IYQGAKAMREAVPAHLPVSVKVRLGWDSG-EKKFEIADAVQQAGATELVVHGRTKEQGYR 177 + +A+ AV +PV++K RLGWD G E+A + AG + VHGRT+ Q YR Sbjct: 126 ALRLIEAVVGAV--DVPVTLKTRLGWDEGCSNAAELAKRAEAAGVAMITVHGRTRCQFYR 183 Query: 178 AEHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVV 237 DW I DI Q +NIPVIANG+I SA + MA S VMIGRGA P L V Sbjct: 184 G-AADWAMISDIAQAVNIPVIANGDIVGVASACRAMAQSNAAGVMIGRGARGRPWLLAEV 242 Query: 238 KYNEPRMPWPEVV------ALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELF 291 PEV L+ + + ++ L + + E+ Sbjct: 243 AAAMGHGTAPEVPRGAVLADLVAGHYEAMLGFYGRDLGLRVARKHLGWYMEAAGSDPEMR 302 Query: 292 QHVRVLN 298 + V + Sbjct: 303 RAVLTAD 309 >UniRef50_D0LY25 TIM-barrel protein, yjbN family n=3 Tax=Bacteria RepID=D0LY25_HALO1 Length = 376 Score = 251 bits (641), Expect = 3e-65, Method: Composition-based stats. Identities = 77/326 (23%), Positives = 133/326 (40%), Gaps = 30/326 (9%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 + +APM D R L +++ + L TE + + + + + Sbjct: 42 LSVAPMMECTDRHFRYFLRQISRHTLLYTEMIVTGTIIHGDRPR--------YLDFSEAE 93 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 + +QL G + LA A A + G V+LN GCPS V+ GA L+ PE++ + Sbjct: 94 HPIALQLGGDDAEALATCARIAEDWGYDEVNLNVGCPSSRVSSGSFGACLMARPEVVARA 153 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGEKKF---EIADAVQQAGATELVVHGR-------TK 172 +AMR AV +PV+VK R+G D ++ E V +AGA VH R + Sbjct: 154 VEAMRAAVA--IPVTVKHRIGIDDRDRYEDMREFVRVVAEAGADRFSVHARKAWLSGLSP 211 Query: 173 EQGYRAEHIDWQAIGDIRQRL-NIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIP 231 ++ + + + +++ ++P+ NG I D SAQ+ +A DAVMIGR A N P Sbjct: 212 KENREVPPLRYADVHRLKREFPHLPIEINGGIVDLDSAQEQLA--HVDAVMIGRAAYNTP 269 Query: 232 NLSRVVKYNEPR--MPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATE 289 + P P A+++ + + RI + + L A Sbjct: 270 WIFAEADARFFGSVAPTPTQTAVVEAMIDYVEAQRGRGVPLHRITRHMFQLFAGQRGARG 329 Query: 290 LFQHVR-VLNNSPD----IARAIQAI 310 +++ + + A+ Sbjct: 330 WRRYLTEQAKSRDAGPEVLRVALDRF 355 >UniRef50_B9K738 TIM-barrel protein, nifR3 family n=1 Tax=Thermotoga neapolitana DSM 4359 RepID=B9K738_THENN Length = 273 Score = 250 bits (639), Expect = 4e-65, Method: Composition-based stats. Identities = 65/286 (22%), Positives = 120/286 (41%), Gaps = 19/286 (6%) Query: 33 FVRVVDQLLPVKVFHRICPELQNASRTPSGTLVRVQLLGQFPQWLAENAARAVELGSWGV 92 V L+ + + P +P V VQ+ G P+ L+ A + + Sbjct: 1 MVSAKGFLMNSEKTRELLP-------SPEEKNVAVQIFGSDPEELSRAADVLSDE-YPWI 52 Query: 93 DLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVSVKVRLGWDSGEKKFE 152 DLN GCP + V G G LL+D +L K +R+ V +VK RLGW+ + + Sbjct: 53 DLNAGCPVRKVVKKGAGGGLLRDLDLFRAVVKELRKHVKGKF--TVKTRLGWNENQIS-K 109 Query: 153 IADAVQQAGATELVVHGRTKEQGYRAEHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQC 212 I + + + G E+ +H RT Q + + DW+++ + + IP +G+I+ + A++ Sbjct: 110 IYEILVEEGVDEVFIHTRTVAQAFTGK-ADWKSLSVLDK--KIPTFVSGDIFSPEDAKRA 166 Query: 213 MAISGCDAVMIGRGALNIPNLSRVVK-----YNEPRMPWPEVVALLQKYTRLEKQGDTGL 267 + SGC V++ RGA+ P L + +K E++ + + L + Sbjct: 167 LEESGCHGVLVARGAIGRPWLFKQIKDFLERGKYSEPSTDEILRSFEMHLSLLVEDKGEE 226 Query: 268 YHVARIKQWLSYLRKEYDEATELFQHVRVLNNSPDIARAIQAIDIE 313 + IK++++ K A + + N + E Sbjct: 227 KAIKEIKKFVAGYTKNLKGARRFRDEMMKIKNLQTLKEMFYNFLRE 272 >UniRef50_A8PTG4 tRNA-dihydrouridine synthase 3 n=1 Tax=Malassezia globosa CBS 7966 RepID=DUS3_MALGO Length = 766 Score = 250 bits (639), Expect = 5e-65, Method: Composition-based stats. Identities = 71/313 (22%), Positives = 117/313 (37%), Gaps = 39/313 (12%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 + LAP+ + R L D+ E L E R Sbjct: 397 LYLAPLTTTGNLPFRRLCASFGS-DIHCGEMGMAESFLQG------HASEWSLVRRWEGE 449 Query: 63 TLVRVQLLGQFPQWLAENAARAVE---LGSWGVDLNCGCPSKTVNGSGGGATLLKDPELI 119 + Q+ G P+ L A G VD+NCGCP V G G+ LL + Sbjct: 450 RIFGTQVCGAKPELLVPTAEVLAREVGRGLDFVDVNCGCPIDLVYNKGAGSALLDHANKL 509 Query: 120 YQGAKAMREAVPAHLPVSVKVRLGWDSGEKKFE-IADAVQQAGATELVVHGRTKEQGYRA 178 + + M EA+ +P+++K+R G S + A A + G L +HGR+++Q Y+ Sbjct: 510 GRIVRGMSEALG-EIPLTIKLRTGTTSKPTTHKIFARAQTEWGVGGLSLHGRSRKQRYKN 568 Query: 179 EHIDWQAIGDIRQRLN--------------------IPVIANGEIWDWQSAQQCMAISGC 218 + DW I L+ +PV NG+++ W+ + + Sbjct: 569 D-ADWAYIRTCVDTLHDAVRTWNEEPQHADEPDMVPVPVYGNGDVYGWRDYYDHLEHAHV 627 Query: 219 DAVMIGRGALNIPNLSRVVKYNE-PRMPWPEVVALLQKYT--RLEKQGDT--GLYHVARI 273 D MI RGAL P + +K + E + ++++Y L G G+ R Sbjct: 628 DGTMIARGALIKPWIFTEIKERRDWDISSRERLDMIRQYASYGLTHWGSDTQGVNTTRRF 687 Query: 274 -KQWLSYLRKEYD 285 + LS+ + Sbjct: 688 LCEMLSFTHRYVP 700 >UniRef50_D2VPF2 Predicted protein n=2 Tax=Naegleria gruberi RepID=D2VPF2_NAEGR Length = 450 Score = 250 bits (639), Expect = 5e-65, Method: Composition-based stats. Identities = 77/328 (23%), Positives = 125/328 (38%), Gaps = 32/328 (9%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 + ++APM + R L E L T + K R + Sbjct: 104 KYVVAPMVDQSEMAFRLLSKEYG-ATLAYTPMFHGMYFAYHKKYRARFYQFNPDL----- 157 Query: 62 GTLVRVQLLGQFPQWLAENAAR---AVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPEL 118 V Q P+ + R + +DLN GCP + G+ L++D + Sbjct: 158 EGPVFAQFCTNDPETFVQCGKRVWDLSKQKISAIDLNLGCPQRIARRGRYGSFLMEDLQT 217 Query: 119 IYQGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQ-GYR 177 ++ + + +PV+ K+R+ ++ E V AGA L VHGRT+EQ G Sbjct: 218 VHSIIN--KAHLELPMPVTAKIRI-FEDLELTMNYVKTVVDAGAQVLCVHGRTREQKGAN 274 Query: 178 AEHIDWQAIGDIRQRLN-IPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRV 236 + DW I IR++ IP+IANG I +Q Q C+ + DAVM G G L P L Sbjct: 275 QNYADWTVIRAIREQFPQIPMIANGNIRTFQDVQDCLEYTRVDAVMSGEGLLENPALFNG 334 Query: 237 VKYNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLR-KEYDE-ATELFQHV 294 ++ P + + KY + K + IK+ L + K E ++L + Sbjct: 335 GQFVHP-------LDISDKYVNICKTHFPPDH--NNIKRHLFRILDKYIPEDRSDLRGIL 385 Query: 295 RVLNNSPDIARAIQ-------AIDIEKL 315 + + D ++L Sbjct: 386 GKASLWEHYREFVDYARKIENEFDFKEL 413 >UniRef50_B3LAS6 tRNA-dihydrouridine synthase, putative n=6 Tax=Plasmodium RepID=B3LAS6_PLAKH Length = 340 Score = 250 bits (639), Expect = 5e-65, Method: Composition-based stats. Identities = 69/307 (22%), Positives = 115/307 (37%), Gaps = 23/307 (7%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 + +LAPM + + R L N L T + + + K Sbjct: 27 KHVLAPMVDLSELAFRLLCRNYN-CHLAFTPMLHAKNFVEHEKYRKG------YFQSCKK 79 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 V Q G + + VDLN GCP + GA LL + + Sbjct: 80 DEPVIAQFCGNNSKIILSAIEYIKN-DVNAVDLNLGCPQQIAKKGNYGAFLLHKHDEVVN 138 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQ-GYRAEH 180 + ++P++ K+R +K + +Q + VHGRTKE+ G + Sbjct: 139 LVSDITNNC--NIPITCKIRKIDQDYQKTLNLCYDLQSRNVKMITVHGRTKEEKGVNIKE 196 Query: 181 IDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYN 240 D++ I I++RLNIP+IANG I ++ Q+C+ + DAVM L P + Sbjct: 197 CDYEIIKIIKERLNIPIIANGSIEHFEDVQKCLNYTKADAVMCAEILLEKPYFFSNQNVH 256 Query: 241 EPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLS-YLRKEYDEATELFQHVRVLNN 299 V ++ +Y L Q ++ +K L L K + T+L + ++ Sbjct: 257 A--------VDIVNEYYDLFLQYESN---PKYLKGHLFKMLYKYFQVHTDLRDLLNNCHS 305 Query: 300 SPDIARA 306 D Sbjct: 306 LDDYVNF 312 >UniRef50_Q9T0J6 tRNA-dihydrouridine synthase 3-like n=10 Tax=Magnoliophyta RepID=DUS3L_ARATH Length = 700 Score = 250 bits (639), Expect = 5e-65, Method: Composition-based stats. Identities = 65/297 (21%), Positives = 117/297 (39%), Gaps = 21/297 (7%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 ++ LAP+ V + R L + D+ E + L E R S Sbjct: 348 KLYLAPLTTVGNLPFRRLCKVLG-ADVTCGEMAMCTNLLQGQA------SEWALLRRHSS 400 Query: 62 GTLVRVQLLGQFPQWLAENAARAV-ELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 L VQ+ G +P ++ E +D+N GCP V G+ LL P + Sbjct: 401 EDLFGVQICGSYPDTVSRVVELIDRECTVDFIDINMGCPIDMVVNKSAGSALLNKPLRMK 460 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKKFE-IADAVQQAGATELVVHGRTKEQGYRAE 179 + V P+++KVR + G+ + + + + GAT + +HGR+++Q Y + Sbjct: 461 NIVEVSSSIVET--PITIKVRTAFFEGKNRIDSLIADIGNWGATAVTIHGRSRQQRYS-K 517 Query: 180 HIDWQAIGDIRQRL--NIPVIANGEIWDWQSAQQCMAI-SGCDAVMIGRGALNIPNLSRV 236 DW I + N+ VI NG+++ + + + + MI RGAL P + Sbjct: 518 SADWDYIYQCTKNATTNLQVIGNGDVYSYLDWNKHKSDCPELSSCMIARGALIKPWIFTE 577 Query: 237 VKY-NEPRMPWPEVVALLQKYTRL-EKQGDTGLYHVARIKQ----WLSYLRKEYDEA 287 +K + E + +++ + R + + V + WLSY + Sbjct: 578 IKEQRHWDITSGERLNIMKDFVRFGLQHWGSDTKGVETTRHFLLEWLSYTFRYIPVG 634 >UniRef50_Q5ZRM0 Nitrogen regulation protein n=6 Tax=Legionella RepID=Q5ZRM0_LEGPH Length = 329 Score = 250 bits (638), Expect = 7e-65, Method: Composition-based stats. Identities = 82/309 (26%), Positives = 142/309 (45%), Gaps = 13/309 (4%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 R++ P+ G + R+L C++E +D L + + + R P+ Sbjct: 20 RLIQGPLAGYSCAPFRDLFNIYTPPAYCVSEMCSAIDILH------KHSSQSRYIYRAPT 73 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + Q+ G P LAE AA+ LG+ +D+NCGCP + G G+ LL+DP+ + Sbjct: 74 EKFLAYQISGNEPHVLAEAAAKLQSLGADLIDINCGCPKSKIRKKGAGSALLEDPQKLIA 133 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHI 181 +R A+ +P+++K+R+ + + +A ++ AGA L+VHGR + Y Sbjct: 134 IISRVRAAIS--IPLTIKIRIQNNEKDLT--LAKQIEDAGAHALIVHGRRWTEDYDI-PC 188 Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNE 241 +WQ I +I+ +NIPVI NG+I + S ++ + IS CD MI R P L R + E Sbjct: 189 NWQQIANIKNAVNIPVIVNGDINNIFSLRKALEISACDGFMISRAGTGKPWLYRDLLNLE 248 Query: 242 P-RMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNNS 300 + + E + L + + V + K + Y K+ +L Q L + Sbjct: 249 TNDVAFDEKLKLFMLHLEGLSCLENEYKAVLQSKSLVRYYFKKQLNEQQL-QQFYQLGSL 307 Query: 301 PDIARAIQA 309 +I + Sbjct: 308 MEIKDFLAE 316 >UniRef50_UPI0001C3129C dihydrouridine synthase DuS n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C3129C Length = 333 Score = 249 bits (637), Expect = 8e-65, Method: Composition-based stats. Identities = 81/314 (25%), Positives = 136/314 (43%), Gaps = 16/314 (5%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVF-HRICPELQNASRTP 60 RV+LAP+ G+ + VR L ++E V + + + R Sbjct: 19 RVVLAPLAGIGNWFVRLQAKRYG-AGLAVSEMVSSHAIHYGNEKTCTELLRVHPDEWRAG 77 Query: 61 SGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 +G V +QL G P + AARA E G+ +DLN GCP V +G GA L+KDP+L Sbjct: 78 AGGPVSIQLFGNDPDIMRSAAARAAETGANLIDLNMGCPVPKVCKTGAGAALVKDPDLAV 137 Query: 121 QGAKAMREAVPAHLPVSVKVRLGWDSGEKK-FEIA-DAVQQAGATELVVHGRTKEQGYRA 178 + A+A A + LPV+VK+R G G++ E+A V AG L +H R Q + Sbjct: 138 EIARA--AAEGSGLPVTVKLRPGLRPGDRNGIELAYRLVADAGIAGLCIHPRHASQQHSG 195 Query: 179 EHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK 238 D++ + + L +PV+ +G + + ++ +G +AV++ RG+L P L V Sbjct: 196 RP-DYELAKRLVEELPVPVLISGGLRSAELVREVFEFTGAEAVLLARGSLGNPWLFEQVL 254 Query: 239 YNEPRMPWP-----EVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQH 293 + P EV +L + + ++++ + E EL Sbjct: 255 GDRVGEPTREEILTEVDWILDR----AVEHLGEGRAARYLRKFYPWYVTRLGEGAELQDR 310 Query: 294 VRVLNNSPDIARAI 307 ++ + A Sbjct: 311 LQRTETVAEARAAF 324 >UniRef50_A7AQM0 Dihydrouridine synthase, putative n=1 Tax=Babesia bovis RepID=A7AQM0_BABBO Length = 355 Score = 249 bits (636), Expect = 1e-64, Method: Composition-based stats. Identities = 70/309 (22%), Positives = 121/309 (39%), Gaps = 23/309 (7%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 R + APM + R L N DL T + + K + + Sbjct: 13 RYVAAPMVNQSELPFRLLCRRYN-VDLTYTPMLHGRIFVENEKYRA------VHFQTSDD 65 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 + Q+ G + + A + VDLN GCP G+ LL +P+L+ Sbjct: 66 DRPLIAQVCGDDAGTITQAARLL-KGHVSAVDLNLGCPQAIAKDGHYGSFLLDEPDLVTG 124 Query: 122 GAKAMREAVPAHLPVSVKVR-LGWDSGEKKFEIADAVQQAGATELVVHGRTKEQ-GYRAE 179 + V + V+ K+R + DS + + +++Q+G L VHGR + + G Sbjct: 125 IVSRVTREV--GIAVTCKIRKVDKDSLQSTLNLCYSLEQSGCKALTVHGRHRSEKGTNVG 182 Query: 180 HIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKY 239 DW AI I+ RL IPVIANG I + ++C++ +G DAVM L P L + Y Sbjct: 183 AADWDAIRIIKSRLRIPVIANGGIETFADVERCLSYTGADAVMSSESLLERPYLFSGITY 242 Query: 240 NEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQW-LSYLRKEYDEATELFQHVRVLN 298 + + ++ +Y + ++ I+ L + E+ + Sbjct: 243 DH--------LDIMDEYLGIVRRYPDQSPCC--IRGHAFKILFQHCQRHPEIRNRLTDAM 292 Query: 299 NSPDIARAI 307 + D + + Sbjct: 293 SLDDFSSVV 301 >UniRef50_Q3MB47 Dihydrouridine synthase, DuS n=6 Tax=Bacteria RepID=Q3MB47_ANAVT Length = 378 Score = 249 bits (636), Expect = 1e-64, Method: Composition-based stats. Identities = 76/312 (24%), Positives = 132/312 (42%), Gaps = 14/312 (4%) Query: 5 LAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGTL 64 LAPM+ V + +++ D TE+ RV D + L + +G Sbjct: 21 LAPMQDVTNLWFMKVIAHYGSPDYFFTEYFRVNDTSRLNRGI------LAAITENDTGRP 74 Query: 65 VRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAK 124 V Q++G+ L A GVDLN GCP+ + G LL P + Q Sbjct: 75 VFAQMIGESIPDLVRTAKELCHYDIAGVDLNMGCPAPRIYRKNVGGGLLLSPGKVEQILA 134 Query: 125 AMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHIDWQ 184 +R+AV P++VK+R+G+++ + +EI D V + L +HGRT + Y + + Sbjct: 135 ELRQAVS-DRPLTVKMRVGFENTDTFYEILDIVNRHNIDLLSLHGRTVKDMYHG-AVKYD 192 Query: 185 AIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNEPRM 244 I + +R++ PV+ANG I +A + + +G VM+GR A+ P L ++ Sbjct: 193 LIAEAVKRVDCPVLANGNIHSATTALEVLERTGAAGVMVGRWAIGNPWLFNQIRQALRGE 252 Query: 245 PWPEVVAL-LQKYTRLEKQ-----GDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLN 298 P V + ++ Y Q V +K +L+Y+ D + + +R Sbjct: 253 PITPVPLVEVRNYIDRLWQTPTAATMPERSRVGYLKMFLNYIALSVDAEGQFLRLMRRTQ 312 Query: 299 NSPDIARAIQAI 310 ++ Sbjct: 313 TEVEMFNLCDRF 324 >UniRef50_Q8EAJ0 tRNA-dihydrouridine synthase A n=121 Tax=Bacteria RepID=DUSA_SHEON Length = 335 Score = 249 bits (636), Expect = 1e-64, Method: Composition-based stats. Identities = 73/308 (23%), Positives = 116/308 (37%), Gaps = 32/308 (10%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 +APM D R ++ L TE V L + Sbjct: 16 FSIAPMLDWTDRHYRYFARLMSANALLYTEMVTTGAILHGRG---------DYLTYNQEE 66 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 + +QL G P LA A A E G V+LN GCPS V GA L+ +PEL+ + Sbjct: 67 HPLALQLGGSNPVELARCAKLAAERGYDEVNLNVGCPSDRVQNGRFGACLMAEPELVAEC 126 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGEKKF---EIADAVQQAGATELVVHGR-------TK 172 AM++ V +PV+VK R+G D + D V G E ++H R + Sbjct: 127 VDAMKQVV--DIPVTVKTRIGIDEQDSYEFLTHFIDTVMAKGCGEFIIHARKAWLQGLSP 184 Query: 173 EQGYRAEHIDWQAIGDIRQRLN-IPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIP 231 ++ +D+ + +++ + + NG I + AQ + D VM+GR A P Sbjct: 185 KENREIPPLDYDRVYQLKRDYPALNISINGGITSLEQAQTHLQ--HLDGVMVGREAYQNP 242 Query: 232 NLSRVVKY-----NEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDE 286 + V + M V+ + Y Q L H+ R + L + Sbjct: 243 YMLAQVDQVLCGSTKAVMSREAVIEAMLPYIEAHLQVGGRLNHITR---HMIGLFQGLPG 299 Query: 287 ATELFQHV 294 A +++ Sbjct: 300 ARAWRRYL 307 >UniRef50_Q5HJT5 Probable tRNA-dihydrouridine synthase n=92 Tax=Firmicutes RepID=DUS_STAAC Length = 328 Score = 248 bits (635), Expect = 1e-64, Method: Composition-based stats. Identities = 69/316 (21%), Positives = 126/316 (39%), Gaps = 15/316 (4%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 +LAPME V D + R +++E D+ TEF P I + + Sbjct: 14 FILAPMEDVTDIVFRHVVSEAARPDVFFTEFTNTESFCHP----EGIHSVRGRLTFSEDE 69 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 + + G P+ E + + ++G G+DLN GCP V G G+ L+ P++ + Sbjct: 70 QPMVAHIWGDKPEQFRETSIQLAKMGFKGIDLNMGCPVANVAKKGKGSGLILRPDVAAEI 129 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHID 182 +A + LPVSVK RLG+ ++ + V + L +H RT+++ + + Sbjct: 130 IQATKA---GGLPVSVKTRLGYYEIDEWKDWLKHVFEQDIANLSIHLRTRKEMSKVD-AH 185 Query: 183 WQAIGDIRQ-----RLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVV 237 W+ I I+ N + NG+I D ++ + G D VMIGRG + P Sbjct: 186 WELIEAIKNLRDEIAPNTLLTINGDIPDRKTGLELAEKYGIDGVMIGRGIFHNPFAFE-- 243 Query: 238 KYNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVL 297 K + L + K + ++++ + A+EL + Sbjct: 244 KEPREHTSKELLDLLRLHLSLFNKYEKDEIRQFKSLRRFFKIYVRGIRGASELRHQLMNT 303 Query: 298 NNSPDIARAIQAIDIE 313 + + + + + Sbjct: 304 QSIAEARALLDEFEAQ 319 >UniRef50_B1ZZ77 Dihydrouridine synthase DuS n=2 Tax=Opitutaceae RepID=B1ZZ77_OPITP Length = 384 Score = 248 bits (633), Expect = 2e-64, Method: Composition-based stats. Identities = 80/337 (23%), Positives = 134/337 (39%), Gaps = 35/337 (10%) Query: 5 LAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGTL 64 LAPM+ V D ++ D TEF RV Q K R + +G Sbjct: 21 LAPMQDVTDLTFMRVIAHYGAPDYFFTEFFRVHSQSRLEKHIVRCLDD------NTTGRP 74 Query: 65 VRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAK 124 + Q++G+ + L A + G+DLN GCP+ V G LL+D + + Sbjct: 75 IFAQVIGEDLEQLVRTARELQQHPIAGIDLNLGCPAPKVYKKNVGGGLLRDLAHVDRILG 134 Query: 125 AMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHIDWQ 184 A+R A P L +VK+R+G+D + D V L VHGRT ++ YR+ + + Sbjct: 135 ALRAATPGGL-FTVKMRIGFDDTTPFEPMLDLVNAHRVDLLSVHGRTVKEMYRSR-VHYD 192 Query: 185 AIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNEPRM 244 I QR+ PV+ANG + A + +G VMIGR A+ P + R + Sbjct: 193 FIARAVQRVRCPVLANGNVTSAPRAVAILRETGAAGVMIGRHAIRNPWIFRQCRELFHPP 252 Query: 245 PWPE---------------------------VVALLQKYTRLEKQGDTGLYHVARIKQWL 277 P + + Y + G HV+++K++L Sbjct: 253 PALQSTTEPSSLPATAGATSPACFRPTFADVRDYIAHLYQATQTPGIPERIHVSKMKKYL 312 Query: 278 SYLRKEYDEATELFQHVRVLNNSPDIARAIQAIDIEK 314 +++ + D + +R + ++ R + + Sbjct: 313 NFVGQAVDPTGAFLREMRRAESEAELFRVCDRHLLPE 349 >UniRef50_B2V534 Dihydrouridine synthase family protein n=29 Tax=Clostridiales RepID=B2V534_CLOBA Length = 321 Score = 247 bits (632), Expect = 3e-64, Method: Composition-based stats. Identities = 71/320 (22%), Positives = 129/320 (40%), Gaps = 18/320 (5%) Query: 1 MRVLLAPMEGVLDSLVRELLTEV-NDYDLCITEFVRV-VDQLLPVKVFHRICPELQNASR 58 M+ LAPMEG+ + R + ++ D T F+ + L K + PE Sbjct: 1 MKYYLAPMEGITGYIYRNTYEKFFHNIDKYFTPFIVTNKSRSLKSKELRDVLPE------ 54 Query: 59 TPSGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPEL 118 G + Q+L + + +LG V+LN GCP+ TV G+ L E Sbjct: 55 NNKGMSIVPQILTNDSEGFINTTRKLQQLGYNEVNLNLGCPAGTVVSKNRGSGFLAKREE 114 Query: 119 IYQGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRA 178 + + + + + +S+K R+G DS E+ +E+ + EL++H RT++ Y Sbjct: 115 LDIFLEEIFKI--DDMKISIKTRIGKDSPEEFYELIKIYNKYPLEELIIHPRTQKDFYGN 172 Query: 179 EHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMA-ISGCDAVMIGRGALNIPNLSRVV 237 + + D N PV NG+I+ + +M+GRG L P L + Sbjct: 173 KP-NLDVFKDALSLSNNPVCYNGDIFTVADHNKFEETFPKVKTLMLGRGILANPGLMNEI 231 Query: 238 KYNE---PRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHV 294 K N+ + + KY L + + R+K+ Y+ + + + + + Sbjct: 232 KNNDFINKELLKDFHDEIFNKYIDL---FNEEKNAMFRMKELWGYMIYIFSDNKKYAKKI 288 Query: 295 RVLNNSPDIARAIQAIDIEK 314 R D A+ ++ E+ Sbjct: 289 RKAQKLSDYNEAVLSLFEEQ 308 >UniRef50_A7NDQ7 tRNA dihydrouridine synthase n=17 Tax=Francisella RepID=A7NDQ7_FRATF Length = 327 Score = 247 bits (631), Expect = 4e-64, Method: Composition-based stats. Identities = 75/328 (22%), Positives = 133/328 (40%), Gaps = 29/328 (8%) Query: 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPS 61 ++ +APM D R ++ + + + TE V + L K F P Sbjct: 7 KICIAPMLDWTDRHYRYMMRLITRHTMLYTEMVTLNAILHGNKEF--------LLKYNPQ 58 Query: 62 GTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQ 121 V +QL G P+ A EL +++N GCPS+ V G +L+ +PEL+ Sbjct: 59 ENPVTLQLGGCVPKDFISCGKLAEELDYNEININVGCPSERVKKGNFGLSLMAEPELVAD 118 Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQ---AGATELVVHGR-------T 171 KAM++ + ++P+SVK R+G+D + E+ + V + AG L +H R + Sbjct: 119 CVKAMKDNL--NIPISVKCRIGYDHNDSYEELYNFVDKQVQAGIDYLCIHARKGWLSGLS 176 Query: 172 KEQGYRAEHIDWQAIGDIRQRL-NIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNI 230 ++ + + + I++ N+ + NG I Q QQ + D+VMIGR A + Sbjct: 177 PKENRTIPELKYDVVYSIKKDFPNLELGINGGITTIQEIQQHLKY--VDSVMIGREAYHN 234 Query: 231 PNLSRVVKYNEPRMPWPEVVALLQKYTRLEKQGD----TGLYHVARIKQWLSYLRKEYDE 286 P L + P + AL Y E D + I + L Sbjct: 235 PMLFKDFDNIFYNQPTTNISALEIAYKMAEYIKDQMDNDPYIKLNNITKHTLNLFNGLPN 294 Query: 287 ATELFQHV--RVLNNSPDIARAIQAIDI 312 A +++ ++ + A+++ Sbjct: 295 AKVYRRYLSENATKKEANVDTFLTALEV 322 >UniRef50_O31546 Probable tRNA-dihydrouridine synthase 2 n=107 Tax=Bacteria RepID=DUS2_BACSU Length = 325 Score = 247 bits (631), Expect = 4e-64, Method: Composition-based stats. Identities = 69/318 (21%), Positives = 127/318 (39%), Gaps = 15/318 (4%) Query: 3 VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62 +LAPME V D + R +++E D+ TEF P + T Sbjct: 14 FVLAPMEDVTDVVFRHVVSEAGRPDVFFTEFTNSESYCHPD----GKDSVRGRLTFTEDE 69 Query: 63 TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122 + + G P+ + + ELG G+D+N GCP V G+G G+ L+ P + + Sbjct: 70 QPIVAHIWGDKPENFRKMSIGMAELGFKGLDINMGCPVPNVAGNGKGSGLICRPAVAAEL 129 Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHID 182 +A + LPVSVK RLG+ ++ E + + L +H RT+ + + + Sbjct: 130 IQAAKA---GGLPVSVKTRLGYTDVDEWREWLTHILKQDIANLSIHLRTRAEMSKVD-AH 185 Query: 183 WQAIGDIRQ-----RLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVV 237 W+ I +I++ + + NG+I D Q+ + G D +MIGRG P Sbjct: 186 WELIPEIKKLRDEVAPDTLLTINGDIPDRQTGLKLAEQYGVDGIMIGRGIFTNPFAFE-- 243 Query: 238 KYNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVL 297 K + + L ++ + ++ + + A+EL Sbjct: 244 KEPKEHSSKELLDLLRLHLDLHDEYSKEEARPYKPLPRFFKIYLRGFRGASELRNQCMNT 303 Query: 298 NNSPDIARAIQAIDIEKL 315 ++ ++ + + + L Sbjct: 304 KSTDEVRALLDDFERKYL 321 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.313 0.164 0.487 Lambda K H 0.267 0.0503 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,021,306,784 Number of Sequences: 3077464 Number of extensions: 87080184 Number of successful extensions: 282380 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 1518 Number of HSP's successfully gapped in prelim test: 1538 Number of HSP's that attempted gapping in prelim test: 272449 Number of HSP's gapped (non-prelim): 3831 length of query: 315 length of database: 1,040,396,356 effective HSP length: 128 effective length of query: 187 effective length of database: 646,480,964 effective search space: 120891940268 effective search space used: 120891940268 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.1 bits) S2: 93 (40.1 bits)