68 d2hoxa1 Probab=100.00  E-value=0  Score=303.10  Aligned_columns=345  Identities=14%

Q ss_pred             CCCEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHCCCCCC--CCCHHHHHHHHHHHHHHHCCCCCHHHEEEECCH
Q ss_conf             997188778998977780899999999999667742021089986--789899999999999871799886677885547
Q batch____        29 TPGAIMLGGGNPAQIPEMQDYFQTLLTDMLESGKATDALCNYDGP--QGKTELLTLLAGMLREKLGWDIEPQNIALTNGS  106 (417)
Q Consensus        29 ~p~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~--~G~~~lR~aia~~l~~~~~~~~~~d~V~~t~G~  106 (417)
                      ....+++..|+|  ..+.+--.+..-..++...........|.+.  .+..+|++.|++.+....+...++++|++|+|+
T Consensus        55 ~~~~~~~~~gdp--~~~~~~~~~~~~~~a~~~~~~~~~~y~~~~~~~~~~~~L~~~i~~l~~~~g~~~~~~~~iv~t~G~  132 (425)
T d2hoxa1          55 QGCSADVASGDG--LFLEEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGV  132 (425)
T ss_dssp             TTCCEECCSCCC--GGGHHHHTTSHHHHCCCCCTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESHH
T ss_pred             CCCCCCCCCCCC--CCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCH
T ss_conf             655434667885--546366411421000112455545654566434452899999999988508867887769994688


Q ss_pred             HHHHHHHHHHHHCCCCEEEECCE--EEECCCCHHHHHHHHHHCCCEEEEECEECCCCCCCCCCCHHHHHHHCCCCCEEEE
Q ss_conf             99999999997269985752020--5835986178999999759889520100025686756798799982689978999
Q batch____       107 QSAFFYLFNLFAGRRADGRVKKV--LFPLAPEYIGYADAGLEEDLFVSARPNIELLPEGQFKYHVDFEHLHIGEETGMIC  184 (417)
Q Consensus       107 t~al~~~~~~l~~~g~~v~~~~~--v~~~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~  184 (417)
                      ++++++++++|++|||.+++..+  +++..|+|..|...+...+.           +...+.+|.+.++.+.++++++++
T Consensus       133 ~~~l~~a~~aL~~pGd~v~~~~p~~v~~~~p~y~~~~~~~~~~~~-----------~~~~~~~d~~~~~~~~~~~~~~~~  201 (425)
T d2hoxa1         133 TQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDK-----------KGYVWAGNAANYVNVSNPEQYIEM  201 (425)
T ss_dssp             HHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCC-----------TTEEEEEEGGGGTTCSCGGGEEEE
T ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHCCC-----------CCCCCCCCHHHHHHHCCCCCEEEE
T ss_conf             999999999864888612356774357300237789999985599-----------744424798899972488857999


Q ss_pred             ECCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHCCCCCCCHHHHHCCCCEEEECCCHHHCC-HHCCEEEEEEC
Q ss_conf             86888830343106763378999987691899965630102787774144414898899824423411-01050799868
Q batch____       185 VSRPTNPTGNVITDEELLKLDALANQHGIPLVIDNAYGVPFPGIIFSEARPLWNPNIVLCMSLSKLGL-PGSRCGIIIAN  263 (417)
Q Consensus       185 l~~p~NPtG~~~~~~~~~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~g~r~G~~~~~  263 (417)
                      +||||||||.+++          |.+||+++|+||+|..+.+.......     +++|+++|+||.+. +|+|+||++++
T Consensus       202 i~~P~NPtG~v~~----------a~~~~~~~i~De~y~~~~~~~~~~~~-----~~~i~~~S~SK~~g~~GlRiG~~i~~  266 (425)
T d2hoxa1         202 VTSPNNPEGLLRH----------AVIKGCKSIYDMVYYWPHYTPIKYKA-----DEDILLFTMSKFTGHSGSRFGWALIK  266 (425)
T ss_dssp             EESSCTTTCCCCC----------CSSTTCEEEEECTTCSTTTSCCCSCB-----CCSEEEEEHHHHTSCGGGCCEEEEEC
T ss_pred             ECCCCCCCCEEEE----------EEECCCEEEEECCCCCCCCCCCCCCC-----CCEEEEEECCCCCCCCCCCEEEEEEC
T ss_conf             8178888560654----------23239689971432343323333456-----85499981551012332310189968


Q ss_pred             -HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH----------
Q ss_conf             -678356787754303575627999999998383079--------9999999999999999999999984----------
Q batch____       264 -EKIITAITNMNGIISLAPGGIGPAMMCEMIKRNDLL--------RLSETVIKPFYYQRVQETIAIIRRY----------  324 (417)
Q Consensus       264 -~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~--------~~~~~~~~~~~~~~~~~~~~~l~~~----------  324 (417)
                       +.+...+.........+++.+.|.++..++++....        +.+.+..++.++++++.+.+.|.+.          
T Consensus       267 ~~~i~~~l~~~~~~~~~~~s~~~Q~aA~~~L~~~~~~~~~~~~~~~~~~~~~r~~l~~r~~~l~~~L~~~~~~~l~~~p~  346 (425)
T d2hoxa1         267 DESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQ  346 (425)
T ss_dssp             CHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCS
T ss_pred             CHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             98999999986410577736899999999960201345655554899999999999999999999986357630034565


Q ss_pred             -CCCCCEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHCCCEEEECHHHCCCCCCCCCCCCCEEEEECCCCHHHHHHHHH
Q ss_conf             -5427879955885049999878998998999999984791999072324667677666788799980599899999999
Q batch____       325 -LPENRCLIHKPEGAIFLWLWFKDLPITTKQLYQRLKARGVLMVPGHNFFPGLDKPWPHTHQCMRMNYVPEPEKIEAGVK  403 (417)
Q Consensus       325 -l~~~~~~~~~p~~g~~~~~~l~~~~~~~~~l~~~L~~~gV~v~pG~~f~~~~~~~~~~~~~~iRis~~~~~e~i~~ai~  403 (417)
                       -.-.-+....|.+++|+|++++..  +.+++.++|.++||.++||+.|        +..++|+|||++.++|+++++++
T Consensus       347 ~~~~~~~~~~~~~~~~f~w~~~~~~--~~~~~~~lL~e~GI~v~pGs~F--------G~~~~~vRiSl~~~~e~ld~~l~  416 (425)
T d2hoxa1         347 SEYCNYFRRMRPPSPSYAWVKCEWE--EDKDCYQTFQNGRINTQNGVGF--------EASSRYVRLSLIKTQDDFDQLMY  416 (425)
T ss_dssp             CEEETTTTEEECCCCSEEEEEECSG--GGCSHHHHHHHTTEECEEGGGG--------TSCTTEEEEECSSCHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCEEEEECCCC--CHHHHHHHHHHCCEEEECCCCC--------CCCCCEEEEEECCCHHHHHHHHH
T ss_conf             5432210013778761699867898--0899999999669499717023--------89886599991399899999999


Q ss_pred             HHHHHHHH
Q ss_conf             99999999
Q batch____       404 ILAEEIER  411 (417)
Q Consensus       404 rL~~al~~  411 (417)
                      ||.+.+++
T Consensus       417 rL~~~v~~  424 (425)
T d2hoxa1         417 YLKDMVKA  424 (425)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHHHHC
T ss_conf             99998726