HHsearch 1.5 NAME batch____ FAM FILE query COM //bmm/www/servers/phyre2/HH/hhmake -i /bmm/www/servers/phyre2/public_html/phyre2_output/0413c6dd4c58695b/query.a3m -o /bmm/www/servers/phyre2/public_html/phyre2_output/0413c6dd4c58695b/query.hhm DATE Thu Jan 19 12:35:48 2012 LENG 107 match states, 107 columns in multiple alignment FILT 126 out of 145 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 5.8 EVD 0.4324 -1.0300 SEQ >ss_pred CHHHHHHHHHHHCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH HHHHHCC >ss_conf 9699999999970203125877573008999999999999999997324877144599999999999999997740488888899999999999999999 9998629 >Consensus xxxlxxxxxxxxxxxsxxxxdxwxgxDKxxHfxaxxxLaxxxxxxlxxxgxsxxrxxxxxxxxxxxxGxxxExxqxxxxgrxxsxxDxxadxxGaxxgxx lxxxxrx >batch____ MRILFVCSLLLLSGCSHMANDSWSGQDKAQHFIASAMLSAAGNEYSQHQGMSRDRSAMFGLMFSVSLGASKELWDSRPEGSGWSWKDLAWDVAGASTGYT VWQLTRH >UniRef50_A4C156(3-84:110) Putative uncharacterized protein n=1 Tax=Polaribacter irgensii 23-P RepID=A4C156_9FLAO E=0.0006 s/c=0.55 id=24% cov=74% ------------------SKDYWKA-NKIKHSVGSFGISSVTYAYLsdhtKHKNLNEVQKRLISLSTALIIGTLKETIDSLSPNNEASWGDMRANIAGVL A---------- >UniRef50_Q12B42(144-234:365) Putative uncharacterized protein n=1 Tax=Polaromonas sp. JS666 RepID=Q12B42_POLSJ E=2e-12 s/c=0.81 id=24% cov=79% -------------------NEGWFGQdtnyggaDKLGHAMFAYTGTRLLTRAFEWAGNDSATALKLGLWTSVGTLMGVELIDGFSKKWRFSKEDAVANLA GGALAYLMER---- >UniRef50_A1APU2(38-118:126) Putative uncharacterized protein n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A1APU2_PELPD E=1e-06 s/c=0.67 id=24% cov=77% -----------------------LGWDKLQHAAALGVMAFLVLRASRSFCASPFRSACTGFVFATLFGGLIEILQGFTANRQADPIDFAADAVGALIAVL LPRI--- >UniRef50_B7IQ14(78-151:161) Conserved domain protein n=12 Tax=Bacillus RepID=B7IQ14_BACC2 E=2e-09 s/c=0.86 id=24% cov=67% ---------------------------KGAHFMVFFMLGSLIYYAFHRSGHSRKRCFIYAILFVAGYATFDEIHQWYTGDRTPMWQDSLLDTCGGLTG-- ------- >UniRef50_B0VIA7(22-119:126) Putative uncharacterized protein n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VIA7_9BACT E=8e-12 s/c=0.73 id=15% cov=93% ---FCLIWILSSLPSQHIPSVNIIGFDKLEHIGIYAILGCLLGYWLIFKDWKLTTVILIYVFLLLLAGL-DEYHQNFIPGRDVSLYDFMANSTGIIIGFL FY----- >UniRef50_C1VEW8(18-121:129) Putative uncharacterized protein n=1 Tax=Halogeometricum borinquense DSM 11551 RepID=C1VEW8_9EURY E=9e-08 s/c=0.56 id=18% cov=42% ----------------------WIGPDKFLHLLGHAVYAVTLADALGRDRYTDAEAAVLAVSISTT---------------------------------- ------- >UniRef50_O13689(18-103:162) Uncharacterized protein C11E3.10 n=2 Tax=Schizosaccharomyces RepID=YDYA_SCHPO E=2e-05 s/c=0.58 id=23% cov=24% ---------------------------------------------------SRRRATQLTILVCGVFgGLGSEFVQS----------------------- -------- >UniRef50_Q5I6C5(6-105:117) Putative uncharacterized protein n=1 Tax=Flavobacterium johnsoniae UW101 RepID=Q5I6C5_FLAJ1 E=0.0003 s/c=0.46 id=17% cov=64% -----IIAYFCLTDSSNLPAVSFPSIDKIVHFCFHFGFTISWIVFFKKelkgKDVNDYKAYFVSFIFSVFFGITIEI----------------------- ----------- >UniRef50_Q3IN74(48-133:156) Sugar metabolism cluster protein n=1 Tax=Natronomonas pharaonis DSM 2160 RepID=Q3IN74_NATPD E=0.0008 s/c=0.52 id=25% cov=41% ------------------------------HILAYFGLAGVLAYATDHWAIPRWRNAVLVIAAAALYGACMEL--------------------------- ------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * * 0 * * * * * * * * * 1 0 * * * * * * 2303 0 0 R 2 * * * * * * * * 2022 * * * * * 693 2885 * * * * 2 0 * * * * * * 3122 0 0 I 3 3407 * * * * * * 1368 * 1457 * * * * * * * 2700 * * 3 0 * * * * * * 4254 0 0 L 4 * * * * 3293 4440 * 2882 * 831 4205 * * * * * * 3320 * * 4 0 * * * * * * 4590 0 0 F 5 4456 4326 * * 2698 * * 3222 * 1368 * * * * * * * 2208 * 4662 5 0 * * * * * * 4900 0 0 V 6 3733 4724 * * 4670 * * 2360 * 1465 * * 5038 * * 4865 4544 2857 * 4481 6 0 * * * * * * 4992 0 0 C 7 2932 3750 * * 5038 * * 2036 * 1469 * * * * * * 4614 3077 * * 7 0 * * * * * * 4992 0 0 S 8 2098 4670 * * 4777 * * * * 2297 * * * * * 3974 2016 4434 4419 3584 8 0 * * * * * * 4992 0 0 L 9 3746 3832 * * 3623 * * 1372 * 2291 * * * * * * * 3202 * 3743 9 0 * * * * * * 5190 0 0 L 10 3574 * * * 3245 * * 4032 * 1201 4752 * * * * 4549 4464 2714 * 4756 10 0 * * * * * * 5190 0 0 L 11 3071 3293 * * 3229 * * 3071 * 2862 * * * * * 2045 3842 4549 4032 * 11 0 * * * * * * 5190 0 0 L 12 3268 5259 * * * 4464 * 2591 * 1264 * * 4601 * * 2619 * 4706 * * 12 0 * * * * * * 5190 0 0 S 13 4604 * * * 3027 5087 * * 4583 3548 * 5150 * * 4739 1115 3840 3599 * * 13 0 * * * * * * 5193 0 0 G 14 3607 * 3564 * * 1609 * * * 3011 * * 2609 * 4711 2866 4568 * * * 14 0 * * * * * * 5120 0 0 C 15 2066 2316 * * 4653 * 4034 4492 * 3225 4568 * * 4011 4594 3018 * 4673 * * 15 0 * * * * * * 5120 0 0 S 16 2909 * * * * 3326 * * * * * 3581 4515 3836 4831 1119 3749 * * * 16 84 4137 * 1000 1000 * * 5120 1289 0 H 17 3246 * * * * 4846 1310 * 4231 3198 * 3428 * 4487 * 4108 * 3786 * 5255 17 0 * * * * * * 5104 0 0 M 18 3598 * * * 3774 5349 * 3155 * 1632 3410 * * * 5435 4898 * 3042 3643 4937 18 0 * * * * * * 5217 0 0 A 19 2138 * * 4840 3513 3731 * 5227 5299 * * * 1815 * 4187 2649 * * * 5359 19 36 5360 * 2000 415 * * 5206 1000 0 N 20 3262 * 4011 3333 5722 3380 4920 5648 2898 * * 2011 5607 * 4960 3912 5636 4471 * * 20 117 4115 5622 1350 718 * * 5184 1714 0 D 21 5804 * 890 3787 6192 5272 * * 5348 4120 * * 2626 * * 5385 * 3998 * * 21 201 2942 * 670 1429 * 0 5102 2985 1000 S 22 5743 * 3225 2450 * 3339 5000 * 4218 * * 4568 2426 5250 4530 3596 * 5520 * 3247 22 40 5193 * 1353 716 * 0 4943 1705 1000 W 23 4954 * * * 3603 5588 * 3518 * 3355 * * * * * 5229 4881 5582 741 * 23 42 6776 5675 0 * 0 * 4998 1000 1000 S 24 * * * * 2384 * * 4496 3872 1675 5294 5351 4043 4768 * 3365 3119 * 5434 * 24 41 5145 * 1921 442 * 0 5008 1632 1469 G 25 3022 * * * * 713 * * * * * 4415 5106 2919 * 5305 6200 * * 5656 25 100 6200 4230 1585 585 * 0 4775 1000 1469 Q 26 4076 * 4307 5633 3718 * 5282 4578 3683 3685 3666 6309 4307 2944 4596 3735 5684 4571 3509 4917 26 68 4447 * 2807 222 532 1696 4684 1572 2085 D 27 * * 39 * * * * * * * * 5232 * * * * * * * * 27 0 * * * * * 0 7428 0 1000 K 28 * * * * * * * * 71 4960 * * * * * * * * 5996 * 28 0 * * * * * 0 7428 0 1000 A 29 2320 * 6315 * 4332 4426 * 3027 6364 1967 4956 5424 5537 5846 * 7795 5517 3228 3968 6808 29 0 * * * * 0 * 7414 0 1000 Q 30 2635 * * 3976 * 2620 5122 4833 3859 3808 4257 6797 * 2585 4401 * 6360 3215 * 6212 30 0 * * * * * * 7416 0 0 H 31 * * * * * * 0 * * * * * * * * * * * * * 31 0 * * * * * * 7414 0 0 F 32 2768 * * * 1020 5170 * 4104 * 2980 5875 * * * * 5273 5233 4026 * 5913 32 0 * * * * * * 7414 0 0 I 33 3150 4584 * * 4497 3161 * 3273 * 2607 4474 * * * * 3745 2942 3479 * 3598 33 12 * 6866 * * * * 7428 0 0 A 34 1282 * * 6053 2804 3329 * 4256 * 5342 * * * * * 3444 3681 4159 * 5155 34 0 * * * * * 0 7428 0 1000 S 35 4535 4914 * 5984 2183 5244 5246 * * 6357 * 6016 * * * 1922 4563 * * 1732 35 0 * * * * * 0 6923 0 1000 A 36 1490 * * * 2450 3075 * 6410 * 3063 5446 * * * * 6127 5494 5054 * 3043 36 0 * * * * 0 * 6923 0 1000 M 37 2697 5656 * * 6937 2929 5116 3504 * 2382 4459 * 6338 5037 * 6432 4155 2251 6426 * 37 0 * * * * * * 6919 0 0 L 38 5457 * * * 2658 5122 * 2782 * 911 4160 * * * * * 6798 * 4767 6460 38 27 6534 7031 1000 1000 * * 6919 1000 0 S 39 1377 5066 * * * 2281 * * * * * * * 5998 * 2606 2772 4236 * * 39 45 * 5035 * * * 0 6922 0 1000 A 40 2836 4774 6104 5363 3466 3254 5963 4253 * 2362 4738 6123 * * 3736 4238 4002 3750 * 6698 40 0 * * * * * 0 6876 0 2187 A 41 2445 5984 * 5777 6567 3449 6173 4306 * 1516 5555 * 4676 * * 4084 3908 3639 * * 41 18 * 6314 * * * 0 6876 0 2187 G 42 3184 6585 * * 2940 2204 * 4532 * 1944 6515 * 5992 * * 5532 3587 3952 4918 * 42 59 6106 5305 0 * * 0 6642 1000 2432 N 43 2606 6404 6124 5977 4992 3485 6535 6527 6168 3368 5221 3943 * 4477 * 3024 4054 3754 * 2770 43 15 * 6615 * * 3111 177 6278 0 3099 E 44 2528 * 4650 3582 5356 5090 * 6258 6546 3956 5039 4542 * 5735 2727 5144 4695 4178 4052 2882 44 15 * 6614 * * 1149 865 6289 0 3135 Y 45 1564 5076 * * 5106 3027 * 5240 * 2875 6365 * * 5419 * * 5219 3503 4624 2984 45 31 * 5541 * * 1955 430 6287 0 2446 S 46 3475 * * * 3124 3729 6291 6127 * 1258 5456 * * * 6527 4150 4429 5556 * 3095 46 131 4966 4194 1705 528 * 0 6662 1654 2540 Q 47 3517 6069 3558 3012 5150 3565 4896 6032 4368 * * 6524 6156 5019 2164 2675 6328 5008 * * 47 145 * 3383 * * * 0 6809 0 3117 H 48 4475 * 6192 3992 3647 6385 2828 5854 3850 3115 * 3934 * 5543 3314 4166 5251 * 2695 5637 48 130 5105 4134 1510 624 3557 128 6742 1692 4067 Q 49 3007 5144 5071 4946 3769 4315 5843 * 3123 4590 * * 4915 3104 3155 3141 4182 6535 4413 * 49 36 5352 * 0 * 4044 90 6883 1358 4333 G 50 3915 6048 4551 6079 4057 1067 * * * 5780 * 3238 * * 3245 4335 5956 5142 * * 50 47 6125 5832 1000 1000 3017 190 6708 1000 4362 M 51 3442 * 4641 4562 4296 6325 6076 4399 4114 3479 3449 4877 4669 * 3864 6137 5827 4456 2518 3900 51 67 * 4467 * * 2355 314 6713 0 4112 S 52 5966 * 3077 4290 * 4544 * * 4848 5082 * 2927 5758 6400 3423 1377 4268 6021 * * 52 57 6632 5128 1000 1000 2022 408 7148 1000 4016 R 53 4482 5134 3730 3847 * 3978 3989 6335 4323 4568 5316 5103 3362 5292 2327 4425 3852 4790 * 5455 53 0 * * * * 1649 554 7197 0 3824 D 54 4592 6026 5409 6225 4727 4066 6336 5764 2630 3637 * * 3823 4742 2281 3841 4083 4513 4745 6312 54 56 4712 * 1214 814 1791 492 7013 2097 3487 R 55 4025 * 6611 5665 * 5283 4159 6043 3211 4636 6003 5260 * 2751 1450 6199 4572 6505 5861 5424 55 38 * 5259 * * 1774 499 7017 0 3010 S 56 1997 4801 5848 * * 4025 * * 4417 4720 6089 5496 4392 5426 2806 2198 5358 6143 5469 5631 56 0 * * * * 1265 776 7064 0 2975 A 57 2228 5666 * * 4787 5516 * 3403 6225 2326 4536 * 4774 * 5561 4999 4128 4349 2978 4793 57 0 * * * * * 0 7084 0 2510 M 58 3247 6402 * * 4785 4975 * 2710 6003 2155 6055 5635 4316 5926 5122 4821 5812 3174 3164 5993 58 0 * * * * 1300 752 6618 0 2510 F 59 3296 * * * 3397 6627 * 3172 5968 2082 5867 * * 6185 5103 5482 4483 3747 3669 2738 59 19 * 6240 * * 1392 692 6442 0 1892 G 60 1606 * * * * 1456 * 6756 * 5406 * * 6399 * * 3773 4628 3061 * 5114 60 31 6372 6763 0 * 1204 821 6418 1000 1749 L 61 3291 5871 * 5774 3197 4323 * 2996 * 1963 4607 * 6458 * * 3938 5400 2633 5711 * 61 0 * * * * * 0 5849 0 1790 M 62 3107 5620 * * 3775 2762 * 3241 * 1658 6736 * 4435 * * 4163 6362 3602 6108 * 62 0 * * * * * 0 5765 0 1790 F 63 3926 * * * 2640 4118 * 3101 * 2030 5500 * * * * 3981 3280 2586 * * 63 0 * * * * 1241 794 5765 0 1790 S 64 1799 3656 * * * 3152 6369 * * 3711 5807 * 6554 * * 2164 3336 3616 * * 64 18 7073 7626 0 * 1450 658 5757 1000 1494 V 65 2684 6213 5887 * 3527 5861 * 2724 * 1852 4270 * * * * 5430 4432 2767 6205 * 65 0 * * * * 0 * 5700 0 1618 S 66 1935 5418 * * 4808 2796 * 4904 * 2098 7023 * 6813 * * 3258 4629 3371 6613 * 66 0 * * * * * * 5769 0 0 L 67 4311 * * * 2073 * * 3749 * 2952 4753 * 6204 * * * 4256 3002 * 1833 67 24 5922 * 0 * * * 5688 1319 0 G 68 3494 * * * 6067 448 5348 * * 5245 5438 * * 4588 * 5155 * 5687 * * 68 0 * * * * * * 5688 0 0 A 69 2564 5221 * 6299 4372 3242 * 2919 * 2560 5534 * * * * 4249 3460 2552 * * 69 14 * 6744 * * * * 5688 0 0 S 70 2144 7658 * * 3444 2515 * 5790 * 2733 * * 5592 7278 * 3286 3909 3448 5685 5253 70 0 * * * * 0 * 5684 0 1000 K 71 5500 * 1859 * * * * 2135 1939 4251 4725 * * 6701 * 5922 6274 3566 * * 71 0 * * * * * * 5688 0 0 E 72 * * 5313 37 * * * * * * * * * * * * * * * * 72 0 * * * * * * 5741 0 0 L 73 5515 6147 * * 3625 5757 * 1994 * 1799 5519 6638 * * * 6340 5638 2834 3976 4109 73 0 * * * * * * 5741 0 0 W 74 3240 * * 5544 5455 4156 2087 3634 4684 3487 4821 5770 * * 7209 5730 5794 4021 4876 2672 74 11 7099 * 0 * * * 5722 1000 0 D 75 * * 1190 * * * * * * * * * * 832 * * * * * * 75 56 5507 5981 404 2034 * * 5722 2129 0 S 76 2705 * 6799 4474 6394 2504 5265 4864 5495 4434 5215 5206 5031 5212 4683 1996 4570 * 6145 5778 76 27 5735 * 0 * 0 * 5754 1735 1260 R 77 4276 * * * 1323 5301 4294 * * 3003 5490 6016 6482 6610 3466 5007 4031 5894 * 3491 77 34 * 5435 * * * * 5758 0 0 P 78 4712 4985 * * 4765 4744 6124 3985 3841 3487 6409 5464 4646 6034 6488 2712 3172 2060 * 6004 78 141 6409 3621 0 * 0 * 5724 1000 1199 E 79 3605 * 5683 3720 * 3078 5059 6406 4468 * * 5574 1135 4817 5393 4486 4764 * * * 79 36 5335 * 0 * 0 * 5686 2012 3252 G 80 5509 6329 4998 4399 * 787 6385 * 5151 * * 4032 6372 * 5697 3347 5211 * 5955 4905 80 26 5832 * 1000 1000 * * 5765 1423 0 S 81 * * 6234 6204 6162 4861 * * 6046 * * 4477 * 6199 776 3591 4142 * 3828 4133 81 12 6973 * 0 * * * 5765 1000 0 G 82 * 5879 4795 3621 5207 1631 5783 5788 5608 6620 5539 6296 6417 5028 4362 2657 3450 6594 * 3986 82 17 * 6417 * * * * 5765 0 0 W 83 2058 5232 * * 1463 3014 * * * * * 6965 3613 * * 5171 7469 5010 3631 6416 83 0 * * * * 0 * 5744 0 1000 S 84 * * 2179 3507 6446 4310 * * * * 5513 * * 4626 * 844 6640 * * * 84 0 * * * * * * 5765 0 0 W 85 5172 * * * 2997 4749 5641 3601 4795 2760 5803 * 3724 * 6510 5177 * 3388 2105 3973 85 0 * * * * * * 5765 0 0 K 86 3614 * 5423 3905 4754 2975 5069 4646 2857 3491 4103 5579 * 3951 4270 4770 4760 5122 5714 4310 86 0 * * * * * * 5765 0 0 D 87 * * 0 * * * * * * * * * * * * * * * * * 87 0 * * * * * * 5763 0 0 L 88 3984 5596 * * 2810 6393 * 2896 * 2021 3037 * * * * 6166 5891 3249 3023 * 88 0 * * * * * * 5736 0 0 A 89 2298 6658 * * 4335 5260 * 3260 6182 2019 4087 * * * 5093 6969 4283 2524 6666 6064 89 0 * * * * * * 5736 0 0 W 90 546 * * * 4880 * * 3967 7464 4577 4326 6373 * * * 6626 * 6010 3927 5953 90 0 * * * * * * 5736 0 0 D 91 * * 659 * * * * * * * * 1448 * * * * * * * * 91 0 * * * * * * 5736 0 0 V 92 2090 4937 * * 5313 4058 * 4068 * 2579 4072 * * * 4994 4114 2682 3109 * * 92 0 * * * * * * 5736 0 0 A 93 1985 5378 * * 6770 5891 * 2509 * 1993 6992 * * 6766 * 3625 4355 3017 * * 93 0 * * * * * * 5736 0 0 G 94 * * * * * 0 * * * * * * * * * * * * * * 94 11 * 7014 * * * * 5736 0 0 A 95 1135 5147 * * * 3848 * 3122 * 5374 * * * * * 3912 3241 2881 * * 95 20 * 6162 * * 0 * 5705 0 1000 S 96 1885 4774 * * 5263 4941 * 3349 * 1752 6781 * * * 5750 4868 4082 3420 6316 6363 96 0 * * * * * 0 5677 0 1000 T 97 2148 4443 * * 3819 * * 2817 * 2103 6551 * * * * 5348 2551 3697 * * 97 0 * * * * 0 * 5329 0 1000 G 98 2320 * * * 6392 456 * 5727 * * * * * * * * * * * 4640 98 0 * * * * * * 5311 0 0 Y 99 2937 5073 * 5426 3546 6242 * 3027 * 3505 * * * * * 3646 5138 2819 6394 2029 99 0 * * * * * * 5406 0 0 T 100 1795 6122 * * 3690 3648 * 4101 * 2017 5331 * 6292 * * 3930 3827 5205 6043 5727 100 0 * * * * * * 5463 0 0 V 101 4516 5129 * * 3438 * * 3458 * 877 5008 * * * * 4750 * 3097 6081 * 101 0 * * * * * * 5351 0 0 W 102 * * * 4602 3018 * 6186 4608 * 2468 * * 5834 * * 5451 5582 6812 2777 1381 102 0 * * * * * * 5055 0 0 Q 103 3219 * * * 4680 5210 * * 2827 4083 * 5543 5258 3146 1444 4814 * 5273 4746 * 103 0 * * * * * * 4890 0 0 L 104 3361 * * * * * * 3344 * 1358 2528 * * * 3096 * * 3015 * * 104 0 * * * * * * 4402 0 0 T 105 1754 * * 3866 4069 * * 3149 * 3970 * * * * * 4454 3264 3141 4083 3704 105 0 * * * * * * 4454 0 0 R 106 3730 * * * 3633 * * * 2307 * * * * * 640 * * * * * 106 0 * * * * * * 4230 0 0 H 107 * * * * * * 912 * * * * 1094 * * * * * * * * 107 0 * * 0 * * * 2899 0 0 //