BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (504 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_C1NCQ8 YgaA protein n=5 Tax=Escherichia RepID=C1NCQ8_9ESCH 1017 0.0 UniRef50_A6TCX4 Anaerobic nitric oxide reductase transcription r... 799 0.0 UniRef50_A8GG93 Anaerobic nitric oxide reductase transcription r... 646 0.0 UniRef50_A7K2J6 Anaerobic nitric oxide reductase transcription r... 592 e-167 UniRef50_Q5E3W8 Anaerobic nitric oxide reductase transcription r... 582 e-165 UniRef50_C4LCC7 Transcriptional regulator, NifA subfamily, Fis F... 461 e-128 UniRef50_Q127H6 Transcriptional regulator, NifA subfamily, Fis f... 457 e-127 UniRef50_O87455 Regulatory protein luxO n=68 Tax=Gammaproteobact... 454 e-126 UniRef50_Q3IJS0 Transcriptional regulator of anaerobic NO reduct... 437 e-121 UniRef50_Q07WT9 Transcriptional regulator, Fis family protein n=... 431 e-119 UniRef50_Q12MS3 Sigma-54 factor, interaction region n=2 Tax=Alte... 426 e-118 UniRef50_Q9K4U8 Nitric oxide reductase transcription regulator n... 422 e-116 UniRef50_Q1R0E5 Transcriptional regulator, NifA subfamily, Fis f... 404 e-111 UniRef50_A6FFF2 Anaerobic nitric oxide reductase transcription r... 380 e-104 UniRef50_A9FR32 Sigma-54 dependent transcriptional regulator n=1... 308 2e-82 UniRef50_Q7M8U4 TRANSCRIPTIONAL REGULATOR (NIFA FAMILY) n=1 Tax=... 282 2e-74 UniRef50_A9ET26 Transcriptional regulator n=2 Tax=Myxococcales R... 281 6e-74 UniRef50_Q3AR86 DNA-binding protein Fis / transcriptional regula... 277 5e-73 UniRef50_B2S230 Formate hydrogenlyase transcriptional activator ... 277 5e-73 UniRef50_D2R1I6 Sigma 54 interacting domain protein n=1 Tax=Pire... 274 5e-72 UniRef50_B3QSR6 Transcriptional regulator, NifA, Fis Family n=2 ... 274 5e-72 UniRef50_P05407 Nif-specific regulatory protein n=11 Tax=Rhizobi... 271 3e-71 UniRef50_C1DXU0 Acetoacetate metabolism regulatory protein AtoC ... 271 5e-71 UniRef50_B9XM81 Sigma54 specific transcriptional regulator with ... 271 6e-71 UniRef50_Q1D574 Sigma-54 dependent transcriptional regulator, Fi... 270 8e-71 UniRef50_B5ZJF6 Transcriptional regulator, NifA, Fis Family n=4 ... 270 8e-71 UniRef50_C1ZA32 Transcriptional regulator containing GAF, AAA-ty... 270 1e-70 UniRef50_A0LFR7 Transcriptional regulator, NifA subfamily, Fis F... 270 1e-70 UniRef50_C0QE85 FhlA n=1 Tax=Desulfobacterium autotrophicum HRM2... 269 1e-70 UniRef50_Q2LXW8 Nif-specific regulatory protein with sigma 54 in... 269 2e-70 UniRef50_D1CFK1 Two component, sigma54 specific, transcriptional... 268 3e-70 UniRef50_A8IQ96 Transcriptional regulator n=18 Tax=Proteobacteri... 266 1e-69 UniRef50_B5JMU1 Sigma-54 interaction domain family n=1 Tax=Verru... 266 1e-69 UniRef50_P03027 Nif-specific regulatory protein n=14 Tax=Proteob... 265 2e-69 UniRef50_A0LJL7 Two component, sigma54 specific, transcriptional... 265 4e-69 UniRef50_A9AYA4 Two component, sigma54 specific, transcriptional... 265 4e-69 UniRef50_C6HY50 Sigma54 specific transcriptional regulator, Fis ... 264 6e-69 UniRef50_Q73KY8 Sigma-54 dependent transcriptional regulator, pu... 264 7e-69 UniRef50_C9RBQ4 Two component, sigma54 specific, transcriptional... 263 1e-68 UniRef50_Q1IQW5 Two component, sigma54 specific, transcriptional... 262 2e-68 UniRef50_C0GSE0 Sigma54 specific transcriptional regulator, Fis ... 261 3e-68 UniRef50_Q39TH4 Transcriptional regulator, NifA subfamily, Fis f... 261 5e-68 UniRef50_Q01Q08 Two component, sigma54 specific, transcriptional... 261 5e-68 UniRef50_C8WE21 Transcriptional regulator, NifA, Fis Family n=4 ... 260 9e-68 UniRef50_P40734 Formate hydrogenlyase transcriptional activator ... 260 1e-67 UniRef50_C6W352 Sigma54 specific transcriptional regulator, Fis ... 259 1e-67 UniRef50_P19323 Formate hydrogenlyase transcriptional activator ... 259 1e-67 UniRef50_A3ERY0 Putative two component, sigma54 specific, transc... 259 2e-67 UniRef50_Q2LUG8 Response regulator containing CheY-like receiver... 258 3e-67 UniRef50_Q2RXL4 Transcriptional regulator, NifA subfamily, Fis f... 258 4e-67 UniRef50_D2TTF4 Two-component system response regulator n=3 Tax=... 258 4e-67 UniRef50_Q026M7 Transcriptional regulator, NifA subfamily, Fis F... 258 5e-67 UniRef50_A4CKT3 Transcriptional regulator, NifA subfamily, Fis F... 258 5e-67 UniRef50_Q1Q6P9 Similar to Sigma-54 dependent transcriptional re... 258 5e-67 UniRef50_Q1PYI3 Strongly similar to sigma 54 response regulatory... 257 6e-67 UniRef50_C8QWL5 Transcriptional regulator, NifA, Fis Family n=1 ... 257 7e-67 UniRef50_C4XRA9 Transcriptional regulatory protein ZraR n=9 Tax=... 257 7e-67 UniRef50_Q53206 Nif-specific regulatory protein n=5 Tax=Alphapro... 257 7e-67 UniRef50_Q01QL4 Sigma54 specific transcriptional regulator, Fis ... 257 7e-67 UniRef50_C9RIK1 Transcriptional regulator, NifA subfamily, Fis F... 257 8e-67 UniRef50_B4DAQ1 Transcriptional regulator, NifA subfamily, Fis F... 256 1e-66 UniRef50_Q2LRW3 Response regulator containing sigma 54 interacti... 256 1e-66 UniRef50_D0LSM1 Transcriptional regulator, NifA subfamily, Fis F... 256 2e-66 UniRef50_A6EHC4 Sigma-54-dependent transcriptional regulator n=1... 256 2e-66 UniRef50_A1VFM6 Sigma54 specific transcriptional regulator, Fis ... 256 2e-66 UniRef50_Q2RVQ1 Transcriptional regulator, NifA, Fis family n=3 ... 256 2e-66 UniRef50_C6HYQ1 Two component, sigma54 specific, transcriptional... 256 2e-66 UniRef50_Q1DC06 Sigma-54 dependent transcriptional regulator, Fi... 255 2e-66 UniRef50_B8DJ70 Sigma54 specific transcriptional regulator, Fis ... 255 2e-66 UniRef50_C1ZJW6 Transcriptional regulator containing GAF, AAA-ty... 255 2e-66 UniRef50_C7PQF6 Transcriptional regulator, NifA subfamily, Fis F... 255 3e-66 UniRef50_Q8Z333 Transcriptional regulatory protein zraR n=36 Tax... 255 3e-66 UniRef50_C0QRG3 Transcriptional regulatory protein ZraR n=2 Tax=... 255 3e-66 UniRef50_Q1D6H5 Sigma-54 dependent DNA-binding response regulato... 254 4e-66 UniRef50_A3EU11 Putative sigma54 specific transcriptional regula... 254 4e-66 UniRef50_P54931 Nif-specific regulatory protein n=9 Tax=Alphapro... 254 4e-66 UniRef50_D2QLL9 Transcriptional regulator, NifA subfamily, Fis F... 254 5e-66 UniRef50_C5BI62 Transcriptional regulator, Fis family n=5 Tax=Ga... 254 5e-66 UniRef50_B9QYK0 Sigma-54 interaction domain family n=3 Tax=Rhodo... 254 5e-66 UniRef50_P12626 Nitrogen fixation protein anfA n=11 Tax=Bacteria... 254 6e-66 UniRef50_Q9APD9 Transcriptional regulatory protein zraR n=89 Tax... 254 8e-66 UniRef50_A3ESE7 Sigma54 specific transcriptional regulator, Fis ... 254 8e-66 UniRef50_C1A631 Putative NtrC family two-component response regu... 253 1e-65 UniRef50_P71229 Hydrogenase-4 transcriptional activator n=45 Tax... 253 1e-65 UniRef50_B5WAL2 PAS modulated sigma54 specific transcriptional r... 253 1e-65 UniRef50_C7PEX2 Sigma54 specific transcriptional regulator, Fis ... 253 1e-65 UniRef50_A6GJF4 Sigma-54 dependent, Vanadium nitrogenase transcr... 253 1e-65 UniRef50_Q1N5U9 Sigma-54 dependent transcriptional regulator/sen... 253 2e-65 UniRef50_B6WRE4 Putative uncharacterized protein n=1 Tax=Desulfo... 253 2e-65 UniRef50_A0L4D6 Sigma54 specific transcriptional regulator, Fis ... 252 2e-65 UniRef50_B0SC18 Transcriptional regulator n=7 Tax=Bacteria RepID... 252 2e-65 UniRef50_UPI00016C5695 DNA-binding protein Fis / transcriptional... 252 2e-65 UniRef50_B3Q676 Transcriptional regulator, NifA subfamily, Fis F... 252 2e-65 UniRef50_Q2RHS4 Sigma54 specific transcriptional regulator, Fis ... 252 3e-65 UniRef50_C1A7J8 Putative NtrC family two-component response regu... 251 4e-65 UniRef50_Q1IRB0 Two component, sigma54 specific, transcriptional... 251 4e-65 UniRef50_B8FJU0 Two component, sigma54 specific, transcriptional... 251 4e-65 UniRef50_B8GM58 Transcriptional regulator, NifA subfamily, Fis F... 251 5e-65 UniRef50_A9EN62 Sigma-54 dependent transcriptional regulator n=1... 251 5e-65 UniRef50_A6EHB3 Sigma-54-dependent transcriptional regulator n=1... 251 5e-65 UniRef50_P09133 Nif-specific regulatory protein n=18 Tax=Rhizobi... 251 6e-65 UniRef50_D0MEW0 Transcriptional regulator, NifA subfamily, Fis F... 250 7e-65 UniRef50_Q1INE5 Two component, sigma54 specific, transcriptional... 250 9e-65 UniRef50_C9RS71 Transcriptional regulator, NifA subfamily, Fis F... 250 9e-65 UniRef50_C7PN78 Sigma54 specific transcriptional regulator, Fis ... 250 1e-64 UniRef50_B8DLN3 Two component, sigma54 specific, transcriptional... 250 1e-64 UniRef50_A4VJ57 Nitrogen fixation positive regulatory protein n=... 250 1e-64 UniRef50_Q0EZK3 Response regulator of hydrogenase 3 activity (Se... 249 1e-64 UniRef50_B3EAH2 Two component, sigma54 specific, transcriptional... 249 1e-64 UniRef50_Q06065 Acetoacetate metabolism regulatory protein atoC ... 249 1e-64 UniRef50_Q30WZ9 Two component transcriptional regulator, Fis fam... 249 1e-64 UniRef50_B8FJD2 Transcriptional regulator, NifA subfamily, Fis F... 249 2e-64 UniRef50_C7LP58 Two component, sigma54 specific, transcriptional... 249 2e-64 UniRef50_B5Y7I9 Acetoacetate metabolism regulatory protein AtoC ... 249 2e-64 UniRef50_Q01W56 Sigma54 specific transcriptional regulator, Fis ... 249 2e-64 UniRef50_C6VTN7 Sigma 54 interacting domain protein n=1 Tax=Dyad... 248 3e-64 UniRef50_Q1NIP6 Response regulator receiver n=2 Tax=Deltaproteob... 248 3e-64 UniRef50_D0LYF6 Two component, sigma54 specific, transcriptional... 248 3e-64 UniRef50_A5W971 Two-component response regulator CbrB n=10 Tax=P... 248 3e-64 UniRef50_A3ZU96 Probable two-component response regulator n=1 Ta... 248 3e-64 UniRef50_D2QGL7 Two component, sigma54 specific, transcriptional... 248 4e-64 UniRef50_Q1DD25 Sigma-54 dependent DNA-binding response regulato... 248 4e-64 UniRef50_A4J443 Two component, sigma54 specific, transcriptional... 248 4e-64 UniRef50_A1AL12 Transcriptional regulator, Fis family n=1 Tax=Pe... 248 4e-64 UniRef50_C1SIN5 Response regulator with CheY-like receiver, AAA-... 248 4e-64 UniRef50_B4UM36 Two component, sigma54 specific, transcriptional... 248 5e-64 UniRef50_Q39SU6 Two component, sigma54 specific, transcriptional... 248 5e-64 UniRef50_D2QY56 Two component, sigma54 specific, transcriptional... 248 5e-64 UniRef50_D2MLD9 Two component, sigma54 specific, transcriptional... 248 5e-64 UniRef50_A8ZV27 Transcriptional regulator, Fis family n=2 Tax=De... 248 5e-64 UniRef50_C6WY59 Two component, sigma54 specific, transcriptional... 247 6e-64 UniRef50_C8WZC4 Two component, sigma54 specific, transcriptional... 247 6e-64 UniRef50_Q1D217 Sigma-54 dependent DNA-binding reponse regulator... 247 6e-64 UniRef50_A8ZU14 Two component, sigma54 specific, transcriptional... 247 9e-64 UniRef50_C0YJU0 Acetoacetate metabolism regulatory protein AtoC ... 247 9e-64 UniRef50_D2L1Y0 Two component, sigma54 specific, transcriptional... 246 1e-63 UniRef50_Q086E2 Two component, sigma54 specific, transcriptional... 246 1e-63 UniRef50_B9M6T3 Sigma54 specific transcriptional regulator, Fis ... 246 1e-63 UniRef50_B8FJT8 Two component, sigma54 specific, transcriptional... 246 1e-63 UniRef50_Q3A356 Two component, sigma54 specific, transcriptional... 246 2e-63 UniRef50_B8IYK1 Two component, sigma54 specific, transcriptional... 246 2e-63 UniRef50_A9F816 Protein kinase n=12 Tax=Bacteria RepID=A9F816_SORC5 246 2e-63 UniRef50_Q3A7M8 Putative two component response regulator n=1 Ta... 246 2e-63 UniRef50_D0LP00 Sigma54 specific transcriptional regulator, Fis ... 245 2e-63 UniRef50_C9RM62 Sigma54 specific transcriptional regulator, Fis ... 245 2e-63 UniRef50_D0LMB6 Sigma 54 interacting domain protein n=1 Tax=Hali... 245 2e-63 UniRef50_C8R1J5 Two component, sigma54 specific, transcriptional... 245 3e-63 UniRef50_B8FEY3 Two component, sigma54 specific, transcriptional... 245 3e-63 UniRef50_A3ER00 Transcriptional regulator, NifA, Fis Family n=3 ... 245 3e-63 UniRef50_C7LR14 PAS modulated sigma54 specific transcriptional r... 245 3e-63 UniRef50_Q1DDD5 Sigma-54 dependent DNA-binding response regulato... 245 3e-63 UniRef50_C8W392 Two component, sigma54 specific, transcriptional... 245 3e-63 UniRef50_A6CG13 Ornithine decarboxylase inhibitor-putative sigma... 245 3e-63 UniRef50_C1SPF3 Two component, sigma54 specific, transcriptional... 244 4e-63 UniRef50_Q1MPA8 Response regulator containing CheY-like receiver... 244 4e-63 UniRef50_A1VHZ7 Two component, sigma54 specific, transcriptional... 244 4e-63 UniRef50_D0LFQ8 Two component, sigma54 specific, transcriptional... 244 4e-63 UniRef50_B5YI45 Transcriptional activator n=1 Tax=Thermodesulfov... 244 4e-63 UniRef50_Q1NW39 Nif-specific regulatory protein n=2 Tax=Deltapro... 244 4e-63 UniRef50_Q3ABV5 Sigma-54 dependent transcriptional regulator n=3... 244 4e-63 UniRef50_Q1D6Z5 Sigma-54 dependent transcriptional regulator, Fi... 244 4e-63 UniRef50_D2R521 Two component, sigma54 specific, transcriptional... 244 4e-63 UniRef50_B1ZTC1 Two component, sigma54 specific, transcriptional... 244 4e-63 UniRef50_Q1PZT5 Strongly similar to sigma 54 response regulatory... 244 5e-63 UniRef50_B8J0D0 Sigma54 specific transcriptional regulator, Fis ... 244 5e-63 UniRef50_D0LIJ2 Two component, sigma54 specific, transcriptional... 244 5e-63 UniRef50_A6EHC6 Transcriptional regulator, NifA subfamily, Fis F... 244 5e-63 UniRef50_B8JA19 Sigma54 specific transcriptional regulator, Fis ... 244 5e-63 UniRef50_Q1H1W5 Two component, sigma54 specific, transcriptional... 244 6e-63 UniRef50_C6E9E0 Two component, sigma54 specific, transcriptional... 244 6e-63 UniRef50_Q4ZY83 Response regulator receiver:Sigma-54 factor, int... 244 6e-63 UniRef50_A1ALJ3 Sigma-54 factor, interaction domain-containing p... 244 6e-63 UniRef50_B8IZX3 Transcriptional regulator, NifA subfamily, Fis F... 244 7e-63 UniRef50_D0Z425 Formate hydrogenlyase transcriptional activator ... 244 7e-63 UniRef50_Q893M0 Putative sigma-54 interacting protein n=1 Tax=Cl... 244 7e-63 UniRef50_B8JAZ2 Two component, sigma54 specific, transcriptional... 244 7e-63 UniRef50_Q1JW16 Sigma54 specific transcriptional regulator, Fis ... 244 7e-63 UniRef50_Q5P474 Phenol-degradation regulator n=11 Tax=Betaproteo... 244 8e-63 UniRef50_B9M610 Two component, sigma54 specific, transcriptional... 243 9e-63 UniRef50_C0GRG2 PAS modulated sigma54 specific transcriptional r... 243 9e-63 UniRef50_Q1PV55 Strongly similar to sigma 54 response regulator ... 243 1e-62 UniRef50_P27713 Nif-specific regulatory protein n=3 Tax=Burkhold... 243 1e-62 UniRef50_A8ZTX6 PAS modulated sigma54 specific transcriptional r... 243 1e-62 UniRef50_Q1PYB5 Similar to sigma 54 response regulatory protein ... 243 1e-62 UniRef50_Q1PYK0 Strongly similar to sigma 54 response regulator ... 243 1e-62 UniRef50_Q1IRW0 Two component, sigma54 specific, transcriptional... 243 2e-62 UniRef50_A3ZNW8 Response regulator of hydrogenase 3 activity (Se... 243 2e-62 UniRef50_Q3AAC4 Sigma-54 dependent transcriptional regulator n=2... 243 2e-62 UniRef50_Q5ZUN1 Sigma 54-dependent response regulator n=10 Tax=G... 243 2e-62 UniRef50_Q1D1F9 DNA-binding reponse regulator HsfA n=3 Tax=Myxoc... 242 2e-62 UniRef50_C1F980 Sigma-54 dependent DNA-binding response regulato... 242 2e-62 UniRef50_A9FIF3 Sigma-54 dependent DNA-binding response regulato... 242 2e-62 UniRef50_A0LH02 Transcriptional regulator, NifA subfamily, Fis F... 242 2e-62 UniRef50_A7HIM1 Two component, sigma54 specific, transcriptional... 242 2e-62 UniRef50_B3E7V2 Two component, sigma54 specific, transcriptional... 242 2e-62 UniRef50_D2L4T0 Two component, sigma54 specific, transcriptional... 242 3e-62 UniRef50_A3EPR9 Putative two component, sigma54 specific, transc... 242 3e-62 UniRef50_D0LL00 Sigma54 specific transcriptional regulator, Fis ... 242 3e-62 UniRef50_Q1D9F3 Sigma-54 dependent transcriptional regulator, Fi... 241 3e-62 UniRef50_B5YI42 AdnA n=3 Tax=Bacteria RepID=B5YI42_THEYD 241 3e-62 UniRef50_A0LFW8 Two component, sigma54 specific, transcriptional... 241 3e-62 UniRef50_A7HGB6 Two component, sigma54 specific, transcriptional... 241 3e-62 UniRef50_B0VES5 Putative uncharacterized protein n=1 Tax=Candida... 241 3e-62 UniRef50_A8UFP5 Sigma54 specific transcriptional regulator with ... 241 3e-62 UniRef50_B3DV39 DNA-binding response regulator, NtrC family (Con... 241 4e-62 UniRef50_C1A9W9 NtrC family two-component response regulator n=1... 241 4e-62 UniRef50_C4FI59 AAA family ATPase n=1 Tax=Sulfurihydrogenibium y... 241 4e-62 UniRef50_C7PLV9 Sigma54 specific transcriptional regulator, Fis ... 241 4e-62 UniRef50_C7LTG8 Sigma54 specific transcriptional regulator with ... 241 4e-62 UniRef50_Q12HA0 Sigma54 specific transcriptional regulator with ... 241 5e-62 UniRef50_D0MGD9 Two component, sigma54 specific, transcriptional... 241 5e-62 UniRef50_C8X1R7 PAS modulated sigma54 specific transcriptional r... 241 5e-62 UniRef50_A5G703 Two component, sigma-54 specific, transcriptiona... 241 5e-62 UniRef50_B1ZR63 Two component, sigma54 specific, transcriptional... 241 6e-62 UniRef50_B8FIT8 PAS modulated sigma54 specific transcriptional r... 241 6e-62 UniRef50_C6XZM7 Sigma-54 factor interaction domain-containing pr... 241 7e-62 UniRef50_Q023H8 Two component, sigma54 specific, transcriptional... 240 7e-62 UniRef50_P09434 Nif-specific regulatory protein n=7 Tax=Rhodobac... 240 8e-62 UniRef50_B8DLL1 Sigma54 specific transcriptional regulator, Fis ... 240 8e-62 UniRef50_B0TAR7 Sigma-54-dependent transcriptional activator (Ni... 240 8e-62 UniRef50_A5G4X7 Transcriptional regulator, NifA subfamily, Fis F... 240 8e-62 UniRef50_A5G9U3 Two component, sigma54 specific, transcriptional... 240 8e-62 UniRef50_B8FCN8 Transcriptional regulator, NifA subfamily, Fis F... 240 9e-62 UniRef50_A7H973 Sigma54 specific transcriptional regulator, Fis ... 240 9e-62 UniRef50_B4UGS2 Two component, sigma54 specific, transcriptional... 240 9e-62 UniRef50_Q30XH6 Putative transcriptional regulator, Fis family n... 240 9e-62 UniRef50_C1SGB7 Response regulator with CheY-like receiver, AAA-... 240 1e-61 UniRef50_Q1CWG7 Sigma-54 dependent DNA-binding response regulato... 240 1e-61 UniRef50_A0LIA2 Sigma54 specific transcriptional regulator, Fis ... 240 1e-61 UniRef50_B8JEK1 Sensor protein n=14 Tax=cellular organisms RepID... 239 1e-61 UniRef50_B3E8H3 Two component, sigma54 specific, transcriptional... 239 1e-61 UniRef50_Q1D552 Sigma-54 dependent DNA-binding reponse regulator... 239 1e-61 UniRef50_Q1D4K8 Sigma-54 dependent DNA-binding response regulato... 239 2e-61 UniRef50_A5G2R6 Two component, sigma54 specific, transcriptional... 239 2e-61 UniRef50_A6CEU3 Acetoacetate metabolism regulatory protein atoC ... 239 2e-61 UniRef50_B1JEG3 Two component, sigma54 specific, transcriptional... 239 2e-61 UniRef50_B5EIR5 Transcriptional regulator, NifA subfamily, Fis F... 239 2e-61 UniRef50_UPI00016C585F ornithine decarboxylase inhibitor-putativ... 239 2e-61 UniRef50_A2SEH5 Phenol-degradation regulator n=1 Tax=Methylibium... 239 2e-61 UniRef50_B3E6R3 Two component, sigma54 specific, transcriptional... 239 2e-61 UniRef50_C7PQF7 Two component, sigma54 specific, transcriptional... 239 2e-61 UniRef50_A4SC79 DNA-binding protein Fis / transcriptional regula... 239 2e-61 UniRef50_C9YH12 Putative uncharacterized protein n=1 Tax=Curviba... 239 2e-61 UniRef50_A1AUC3 Two component, sigma54 specific, transcriptional... 239 2e-61 UniRef50_C0A2X1 Response regulator receiver protein n=1 Tax=Opit... 239 2e-61 UniRef50_Q6LW41 Hypothetical two-component response regulator n=... 239 3e-61 UniRef50_C8X0P6 Two component, sigma54 specific, transcriptional... 238 3e-61 UniRef50_Q311G4 DNA-binding protein Fis / transcriptional regula... 238 3e-61 UniRef50_B4D0Z8 Two component, sigma54 specific, transcriptional... 238 3e-61 UniRef50_B8FXS0 Two component, sigma54 specific, transcriptional... 238 4e-61 >UniRef50_C1NCQ8 YgaA protein n=5 Tax=Escherichia RepID=C1NCQ8_9ESCH Length = 529 Score = 1017 bits (2630), Expect = 0.0, Method: Compositional matrix adjust. Identities = 504/504 (100%), Positives = 504/504 (100%) Query: 1 MSFSVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLA 60 MSFSVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLA Sbjct: 26 MSFSVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLA 85 Query: 61 KDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFA 120 KDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFA Sbjct: 86 KDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFA 145 Query: 121 GQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFE 180 GQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFE Sbjct: 146 GQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFE 205 Query: 181 AVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLV 240 AVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLV Sbjct: 206 AVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLV 265 Query: 241 YLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLL 300 YLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLL Sbjct: 266 YLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLL 325 Query: 301 RVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRE 360 RVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRE Sbjct: 326 RVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRE 385 Query: 361 RGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARA 420 RGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARA Sbjct: 386 RGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARA 445 Query: 421 TRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWA 480 TRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWA Sbjct: 446 TRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWA 505 Query: 481 ACARMLETDVANLHRLAKRLGLKD 504 ACARMLETDVANLHRLAKRLGLKD Sbjct: 506 ACARMLETDVANLHRLAKRLGLKD 529 >UniRef50_A6TCX4 Anaerobic nitric oxide reductase transcription regulator norR n=84 Tax=Gammaproteobacteria RepID=NORR_KLEP7 Length = 516 Score = 799 bits (2063), Expect = 0.0, Method: Compositional matrix adjust. Identities = 404/507 (79%), Positives = 439/507 (86%), Gaps = 5/507 (0%) Query: 1 MSFSVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLA 60 MSFSVD LA IAI+LQ IGH DRF RLITTLRQ+L CDASALLRY++ QF+PLAIDGLA Sbjct: 1 MSFSVDELARIAIDLQSDIGHTDRFSRLITTLRQILGCDASALLRYEAHQFVPLAIDGLA 60 Query: 61 KDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFA 120 +DVLGRRFALEGHPRLEAIARAGDVVRFPADS+LPDPYDGLIPG ESLKVHACVGLPLFA Sbjct: 61 QDVLGRRFALEGHPRLEAIARAGDVVRFPADSDLPDPYDGLIPGHESLKVHACVGLPLFA 120 Query: 121 GQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFE 180 GQ LIGALTLDGM D+FD FSDEELRLIAAL AGAL+NALLI +LE+QN+LP A + Sbjct: 121 GQTLIGALTLDGMDADRFDSFSDEELRLIAALVAGALNNALLIARLEAQNVLPAQAVNYP 180 Query: 181 AVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLV 240 ++ ++IGLS M QLKKEI+IVAASDLNVLISGETGTGKELVAKA+H+ SPRA NPLV Sbjct: 181 LPERQEIIGLSGPMLQLKKEIDIVAASDLNVLISGETGTGKELVAKAVHQGSPRAANPLV 240 Query: 241 YLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLL 300 YLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLL Sbjct: 241 YLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLL 300 Query: 301 RVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRE 360 RVLQYGDIQRVGDDR LRVDVRVLAATNRDLR+EV+ GRFRADL+HRLSVFPLSVPPLRE Sbjct: 301 RVLQYGDIQRVGDDRSLRVDVRVLAATNRDLRQEVVEGRFRADLYHRLSVFPLSVPPLRE 360 Query: 361 RGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARA 420 R DV+LLAGYFCEQCRLR GL+RV+L+ ARN LQ +S+PGNVRELEHAIHRAVVLARA Sbjct: 361 RESDVVLLAGYFCEQCRLRMGLARVILAEAARNRLQQWSWPGNVRELEHAIHRAVVLARA 420 Query: 421 TRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQ----NLREATEAFQRETIRQALAQNH 476 T++GDEV+LE QHF F V P NLREAT++FQRE I +AL N Sbjct: 421 TQAGDEVVLEPQHFQFA-VAAPMLPTETAAAAPATGNINLREATDSFQREAISRALEANQ 479 Query: 477 HNWAACARMLETDVANLHRLAKRLGLK 503 NWAA AR LE DVANLHRLAKRLGLK Sbjct: 480 GNWAATARALELDVANLHRLAKRLGLK 506 >UniRef50_A8GG93 Anaerobic nitric oxide reductase transcription regulator norR n=21 Tax=Gammaproteobacteria RepID=NORR_SERP5 Length = 507 Score = 646 bits (1667), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/510 (66%), Positives = 403/510 (79%), Gaps = 10/510 (1%) Query: 1 MSFSVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLA 60 M+ S+ LA+IAIELQ G+ +DRFQRLI +LR +L CDASALLR++ +QF PLAIDGLA Sbjct: 1 MTLSIQSLASIAIELQSGLTQRDRFQRLINSLRSLLRCDASALLRFEGQQFRPLAIDGLA 60 Query: 61 KDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFA 120 +DVLGRRFAL+ HPRLEAIARAG VVRFPADSELPDPYDGLIPG + LKVHAC+GLPLFA Sbjct: 61 QDVLGRRFALDAHPRLEAIARAGGVVRFPADSELPDPYDGLIPGHDQLKVHACIGLPLFA 120 Query: 121 GQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLP----GDA 176 Q+LIGALT D + P QFD FSDEELRLI+ALAAGAL+NALL+E LE Q + P G + Sbjct: 121 EQDLIGALTFDSLDPMQFDRFSDEELRLISALAAGALNNALLVEALERQALSPLASPGGS 180 Query: 177 TPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAV 236 +P E ++IGLS M QLK+EI IVA S+LNVLI+GETG GKELV +AIH+ S RA Sbjct: 181 SPRE---NDEIIGLSSVMQQLKQEISIVAGSELNVLITGETGVGKELVVRAIHQGSARAA 237 Query: 237 NPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQ 296 NPLVYLNCAALPESVAESELFGHVKGAFTGAI +R+GKFEMADNGTLFLDEIGELSL+LQ Sbjct: 238 NPLVYLNCAALPESVAESELFGHVKGAFTGAIQHRAGKFEMADNGTLFLDEIGELSLSLQ 297 Query: 297 AKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVP 356 AKLLRV+QYGD+QRVGDDR RV+VR+LAATNRDL++ + G FR DL+HRLSVFPL+VP Sbjct: 298 AKLLRVIQYGDLQRVGDDRVKRVNVRILAATNRDLKQAAVDGAFRLDLYHRLSVFPLAVP 357 Query: 357 PLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVV 416 PLRER D+ LLAGYFCE+CR++ GL ++ LS A + L+ YS+PGN+RELEH+I+RA + Sbjct: 358 PLRERVSDIALLAGYFCERCRIKLGLMQLTLSVQALSALEQYSWPGNIRELEHSIYRAAI 417 Query: 417 LARATRSGDEVILEAQHFAFPEVTLPTPEV-AAVP--VVKQNLREATEAFQRETIRQALA 473 LARA +S E+ L HF LP + A+P + +L T+ FQR I + L Sbjct: 418 LARAEQSSSELQLLPAHFTIKAGALPARIIDDALPESAIGVSLATLTQHFQRSVIEKTLV 477 Query: 474 QNHHNWAACARMLETDVANLHRLAKRLGLK 503 + NWAA AR LE D NLHRLAKRL +K Sbjct: 478 ECEMNWAATARKLELDSGNLHRLAKRLNMK 507 >UniRef50_A7K2J6 Anaerobic nitric oxide reductase transcription regulator NorR n=4 Tax=Gammaproteobacteria RepID=A7K2J6_VIBSE Length = 510 Score = 592 bits (1526), Expect = e-167, Method: Compositional matrix adjust. Identities = 304/500 (60%), Positives = 369/500 (73%), Gaps = 7/500 (1%) Query: 11 IAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLAKDVLGRRFAL 70 I +L + Q RF L+TT+R++L+CDASALL Y+ + F PLAI+GLAK+VLGRRF++ Sbjct: 11 ITQDLNSALTRQARFDTLLTTIREILKCDASALLLYEDQHFKPLAINGLAKEVLGRRFSI 70 Query: 71 EGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQE-SLKVHACVGLPLFAGQNLIGALT 129 HPRLEAIARAGD+VRFP++S+LPDPYDGLIP + L VH+C+GLPL LIGA+T Sbjct: 71 NQHPRLEAIARAGDIVRFPSNSDLPDPYDGLIPNHDDKLHVHSCIGLPLLIDDQLIGAIT 130 Query: 130 LDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQTQMIG 189 +D P+QFD ++ELR ++ALAAG L ALL+EQLE+Q LP + + ++IG Sbjct: 131 IDAFDPNQFDGLLNQELRFVSALAAGGLHTALLLEQLETQASLPRGSYTEKRTLSNEIIG 190 Query: 190 LSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPE 249 S GM L+++I+ VA ++L+VLI GETG GKELVA AIH S RA N LVYLNCAALPE Sbjct: 191 KSAGMKALQEQIDAVADTELSVLIMGETGVGKELVANAIHHRSHRANNTLVYLNCAALPE 250 Query: 250 SVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQ 309 SVAESELFGH+KGAFTGAISNR GKFE AD GTLFLDE+GELSL LQAKLLR LQYGDIQ Sbjct: 251 SVAESELFGHIKGAFTGAISNRKGKFEQADGGTLFLDEVGELSLELQAKLLRALQYGDIQ 310 Query: 310 RVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLA 369 RVGDDR +RV+ R++AATNR L EEV AGRFRADL+HRLSVFPL VPPLRER DDV+LLA Sbjct: 311 RVGDDRHIRVNTRIVAATNRVLHEEVKAGRFRADLYHRLSVFPLHVPPLREREDDVVLLA 370 Query: 370 GYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVIL 429 G+F EQ R + GL+ V LS L+ YS+PGNVRELEH I RA VLA+A ++ L Sbjct: 371 GFFAEQLRSKLGLNSVRLSPTLVQALKDYSWPGNVRELEHVIKRAGVLAKARTQSLDIEL 430 Query: 430 EAQHFAFP-EVTLPTPEVAAVP-----VVKQNLREATEAFQRETIRQALAQNHHNWAACA 483 Q F PT E + +P + L++AT+ FQ+ I +AL QN NWAA A Sbjct: 431 VEQDFDIKASNNQPTTEESGIPSSSFELSDAGLKQATDTFQKAMIIKALEQNQGNWAATA 490 Query: 484 RMLETDVANLHRLAKRLGLK 503 R LE D NLHRLAKRLG+K Sbjct: 491 RQLELDNGNLHRLAKRLGIK 510 >UniRef50_Q5E3W8 Anaerobic nitric oxide reductase transcription regulator norR n=23 Tax=Gammaproteobacteria RepID=NORR_VIBF1 Length = 512 Score = 582 bits (1501), Expect = e-165, Method: Compositional matrix adjust. Identities = 288/507 (56%), Positives = 369/507 (72%), Gaps = 8/507 (1%) Query: 6 DVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLAKDVLG 65 D IA++L G+ +DRF+RL++T+R L+CDASALL + ++ F PLA +GL DV+G Sbjct: 6 DEWVQIALDLTSGLSSKDRFERLLSTIRNALKCDASALLLFKNQYFSPLATNGLDGDVIG 65 Query: 66 RRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQE-SLKVHACVGLPLFAGQNL 124 RRFA+ HPRLEAIARAGD+VRFP+DS+LPDPYDGLI +E L+VH+C+GLPL + L Sbjct: 66 RRFAISQHPRLEAIARAGDIVRFPSDSDLPDPYDGLIANEERQLQVHSCIGLPLLVNERL 125 Query: 125 IGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAV-- 182 IGA+T+D P QFD F+++ELR+I+ALAA +L ALL+E+LE+Q+ + + FE Sbjct: 126 IGAVTIDAFDPTQFDSFTNKELRIISALAATSLHTALLMERLENQSGENSNNSSFERSPD 185 Query: 183 KQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYL 242 +MIG S M +L+ I VA ++L+VLI+GETG GKELVA A+H+ S RA LVYL Sbjct: 186 NHVEMIGESLAMQELQANINAVANTELSVLITGETGVGKELVASALHQRSTRAQQNLVYL 245 Query: 243 NCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRV 302 NCAALPESVAESELFGHVKGAFTGAISNR GKFE ADNGTLFLDEIGELSLALQAKLLRV Sbjct: 246 NCAALPESVAESELFGHVKGAFTGAISNRKGKFESADNGTLFLDEIGELSLALQAKLLRV 305 Query: 303 LQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERG 362 LQYGDIQR+GDD ++V+ R++AATN+ L +EV G FRADL+HRLSVFP+ VPPLR+RG Sbjct: 306 LQYGDIQRIGDDNHIKVNTRIIAATNKTLSDEVKNGDFRADLYHRLSVFPIFVPPLRDRG 365 Query: 363 DDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATR 422 +DV LL GYF E+ R++ + + ++ A LL YS+PGN+RELEH I RA VL+RA Sbjct: 366 NDVTLLVGYFAEKSRIKLAATSIRITPEAITLLNDYSWPGNIRELEHVISRAAVLSRAQS 425 Query: 423 SGDEVILEAQHFAFPEVTLPTPEVAAVPVV-----KQNLREATEAFQRETIRQALAQNHH 477 +++L HF + +A V ++LR AT+ FQ I++ + Sbjct: 426 DDSDLVLSPTHFLIKKENHAEKNIANQIVTPHSKNTKDLRSATDEFQANLIKKTYQEQQQ 485 Query: 478 NWAACARMLETDVANLHRLAKRLGLKD 504 NWAA AR L+ D NLHRLAKRL LK+ Sbjct: 486 NWAATARALQLDTGNLHRLAKRLNLKE 512 >UniRef50_C4LCC7 Transcriptional regulator, NifA subfamily, Fis Family n=22 Tax=Gammaproteobacteria RepID=C4LCC7_TOLAT Length = 521 Score = 461 bits (1186), Expect = e-128, Method: Compositional matrix adjust. Identities = 257/509 (50%), Positives = 347/509 (68%), Gaps = 16/509 (3%) Query: 10 NIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLAKDVLGRRFA 69 IA+ L + + +FQRL+ + VL CDA AL++ + + +P+A GLA +++G+RF Sbjct: 12 QIAVGLSTSMPGELQFQRLVQAICDVLPCDAVALMQLNEGELVPVAAMGLAPELIGQRFL 71 Query: 70 LEGHPRLEAIARAGDVVRFPADSELPDPYDGL--IPGQESLKVHACVGLPLFAGQNLIGA 127 HPRL+AI + + VRFPAD+ELPDP+DG + + + VH+C+G L+ + L+G Sbjct: 72 PAEHPRLQAILQEREPVRFPADAELPDPFDGWLAVDRERTADVHSCMGCSLYVDRQLVGV 131 Query: 128 LTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLE----SQNMLPGDATPFEAVK 183 LTLD + P +FD D + AALAA L N LI LE Q L + + Sbjct: 132 LTLDALAPGRFDDVDDMTVAAFAALAAATLRNVALIRALEHGRAQQQELAQELVRDARRR 191 Query: 184 QTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLN 243 + ++IG SP M +L++EI++VA++DL VLI+GETGTGKELVA+ +H S R+ LV++N Sbjct: 192 EGELIGNSPLMRKLREEIDMVASTDLAVLITGETGTGKELVARTLHARSRRSEQALVHVN 251 Query: 244 CAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVL 303 CAALPE +AESELFGHVKGAFTGA SNR+GKFE+AD GTLFLDEIGEL L+LQAKLLR L Sbjct: 252 CAALPEQIAESELFGHVKGAFTGATSNRAGKFELADGGTLFLDEIGELPLSLQAKLLRAL 311 Query: 304 QYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGD 363 Q G+IQRVG D+ LRV+VR++AATNRDL +EV GRFR+DL+HRL V+P++VPPLRE Sbjct: 312 QQGEIQRVGSDKLLRVNVRLIAATNRDLEQEVADGRFRSDLYHRLKVYPIAVPPLREHIA 371 Query: 364 DVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRS 423 D+ L+ YF +Q R R GL ++ L A +Q Y +PGNVRELEH + RA + A + Sbjct: 372 DLDTLSSYFLDQARTRLGLRQIGLHPQALLAMQAYDWPGNVRELEHLLMRASLKATRHKE 431 Query: 424 GDEVILEAQHFAFP-EVTLPTPEVAA----VPVV----KQNLREATEAFQRETIRQALAQ 474 G +IL A+H P V T VAA PV+ +Q LR+A +++Q+E I Q+L Sbjct: 432 GRPLIL-AEHLDLPVPVQQLTESVAAEESSTPVIALSAEQGLRDAVDSYQKELILQSLEA 490 Query: 475 NHHNWAACARMLETDVANLHRLAKRLGLK 503 N NW+A AR L+TD ANL+RLA+RLG+K Sbjct: 491 NQGNWSATARQLKTDRANLNRLAQRLGIK 519 >UniRef50_Q127H6 Transcriptional regulator, NifA subfamily, Fis family n=14 Tax=Proteobacteria RepID=Q127H6_POLSJ Length = 552 Score = 457 bits (1177), Expect = e-127, Method: Compositional matrix adjust. Identities = 256/533 (48%), Positives = 342/533 (64%), Gaps = 43/533 (8%) Query: 5 VDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLAKDVL 64 + L + +L R + +R++RL+ +R +L CDA+ALLR D +PLA++GL+ D + Sbjct: 7 LKALVPLVDDLSREMPDGERYRRLLEAVRALLPCDATALLRLDGAALVPLAVNGLSSDTM 66 Query: 65 GRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPG-QESLKVHACVGLPLFAGQN 123 GRRF +E HPR + + AG +RFP D ELPDPYDGL+ G L+VH C+G P+ G+ Sbjct: 67 GRRFKVEEHPRFKRLLEAGGPMRFPVDCELPDPYDGLVEGLHGHLEVHDCMGCPVQVGEK 126 Query: 124 LIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQL-----------ESQNML 172 G LT+D + +F +L+ A+LAA +S +E+L ++ L Sbjct: 127 NWGVLTIDALNSQRFSAVDLGDLQAFASLAAATVSVVQRMERLTLRAEDERLRADTYREL 186 Query: 173 PGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEAS 232 ++TP +IG S +L +EI +V S+L VLI+GETG GKELVA+A+H AS Sbjct: 187 AAESTP------PALIGQSAAHQRLLEEIAVVGNSELTVLITGETGVGKELVAQALHAAS 240 Query: 233 PRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELS 292 PRA PL+ LNCAALPE++ ESELFGHV+GAF+GA+++R GKFE+A+ GTLFLDE+GELS Sbjct: 241 PRAARPLISLNCAALPETLVESELFGHVRGAFSGAVADRRGKFELANGGTLFLDEVGELS 300 Query: 293 LALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFP 352 LA+QAKLLRVLQ G +QR+G DR +VDVRV+AATNRDL EV AGR+RAD +HRLSV+P Sbjct: 301 LAVQAKLLRVLQNGQLQRLGSDREHQVDVRVIAATNRDLAHEVRAGRYRADFYHRLSVYP 360 Query: 353 LSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIH 412 L VPPLRERG DV+LLAGYF EQ R R GL + + A A+ L + +PGNVRELEH + Sbjct: 361 LVVPPLRERGHDVLLLAGYFLEQNRSRLGLGSLRMDADAQASLLAHDWPGNVRELEHLVG 420 Query: 413 RAVVLARATRSGDEVILE--AQHFAFP--------------------EVTLPTPEVAAVP 450 R+ + A A G IL A H P + +P AA+P Sbjct: 421 RSALKALAGVPGRPRILSLTASHLDLPAPASWGASAPDASGSKDAAVQEGMPDAGGAALP 480 Query: 451 VVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 V +LR + E QR+ I +LA++H+NWA+ AR L ANL RLAKRLGL+ Sbjct: 481 V---DLRTSMEWHQRQRIAASLARHHNNWASAARELGLHRANLVRLAKRLGLR 530 >UniRef50_O87455 Regulatory protein luxO n=68 Tax=Gammaproteobacteria RepID=LUXO_VIBC3 Length = 530 Score = 454 bits (1168), Expect = e-126, Method: Compositional matrix adjust. Identities = 251/518 (48%), Positives = 332/518 (64%), Gaps = 21/518 (4%) Query: 3 FSVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLAKD 62 FS+ L + + L G +++RF RL+ +R+ + CD L+ + PLA+ GL +D Sbjct: 4 FSLSTLLEMTVGLASGANNEERFHRLLDAVRKAVICDCVVLMSLHNDTLTPLAMQGLTRD 63 Query: 63 VLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLI-PGQESLKVHACVGLPLFAG 121 LGRRF + HPRL I A VRF AD LPDP+DGL+ ++ L +H+C+GLPL G Sbjct: 64 TLGRRFVVSEHPRLAQICSADLPVRFAADCPLPDPFDGLLLDSEDDLPMHSCMGLPLHFG 123 Query: 122 QNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQ--------NMLP 173 + L+G LTLD ++PD FD S L ++AA+AA L L +LE+Q L Sbjct: 124 EQLLGILTLDSLKPDAFDHLSPRSLEILAAIAAATLKMTLTFSELENQAKQTQLRLEELN 183 Query: 174 GDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASP 233 +A ++V ++IG S M +K +I++VA S N+LI GETG GKELVA+ IH+ S Sbjct: 184 QEAWSRDSV---EIIGNSGPMLAMKADIDVVAPSQFNILIHGETGVGKELVARTIHQRSN 240 Query: 234 RAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSL 293 R PLVY+NCAA+PE++ ESELFGHVKGAFTGA R GKF +AD GTLFLDEIGEL L Sbjct: 241 RKRQPLVYVNCAAIPENLLESELFGHVKGAFTGADRARMGKFALADGGTLFLDEIGELPL 300 Query: 294 ALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPL 353 + Q+K+LR LQ +IQ VG DR VDVR+LAATNRDL++EV AGRFRADL+HRLSV+P+ Sbjct: 301 SAQSKILRALQNHEIQPVGQDRVQTVDVRILAATNRDLKKEVEAGRFRADLYHRLSVYPI 360 Query: 354 SVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHR 413 VPPLRER D+ LLAGYF EQ R + G++++ L + L Y +PGNVRELEH I+R Sbjct: 361 YVPPLRERKGDLSLLAGYFVEQARRKLGITQLKLHGDVLSQLIQYPWPGNVRELEHVINR 420 Query: 414 AVVLARATRSGDEV----ILEAQHFAFPEVTLPTPEVAAVPVVKQ-----NLREATEAFQ 464 A + A+A + G V + + P + P P++ + LR+AT+ FQ Sbjct: 421 AALKAKARQRGRPVTTLKVEDLGELQGPRAAMVEPTAQDEPMLGEWIGELGLRDATDEFQ 480 Query: 465 RETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 R I + L Q NWA AR L+TD ANL RLAKRLG+ Sbjct: 481 RHLISETLTQADFNWAEAARRLQTDRANLTRLAKRLGI 518 >UniRef50_Q3IJS0 Transcriptional regulator of anaerobic NO reduction and detoxification (EBP family) n=6 Tax=Gammaproteobacteria RepID=Q3IJS0_PSEHT Length = 528 Score = 437 bits (1124), Expect = e-121, Method: Compositional matrix adjust. Identities = 244/526 (46%), Positives = 335/526 (63%), Gaps = 28/526 (5%) Query: 1 MSFSVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLA 60 MS +++ A +A++L + ++ F++L+T L V+ DASALL Q PLAI GL Sbjct: 1 MSSAINFTA-VAVKLAQSTLDKNCFEQLLTVLETVIASDASALLELQGEQLKPLAIKGLM 59 Query: 61 KDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQES-LKVHACVGLPLF 119 D LGRRF L HPRLEAI ++F D LPDPYDGL+ + + VHAC+GLPLF Sbjct: 60 PDSLGRRFKLSEHPRLEAICNTQQPLQFAHDCPLPDPYDGLLLAKTGDIPVHACLGLPLF 119 Query: 120 AGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPF 179 Q L+G +T D + + F+ S + L + L + AL QL + ++ Sbjct: 120 YQQQLLGVITFDSLNANAFNAISAQTLSTLQTLCSAHFKTAL---QLAHYKLHAQHSSAL 176 Query: 180 ------EAVKQT--QMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEA 231 EA+ + ++IG S + LK +I++VAAS+ +VLI GETG GKELVA+ IH Sbjct: 177 VQELNREALTRDGGEIIGQSSAIQALKNDIKLVAASNFSVLILGETGVGKELVARNIHLH 236 Query: 232 SPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGEL 291 S R+ PL++LNCA+L E++AESE FGH KGAFTGA R GKF++A GTLFLDEIGEL Sbjct: 237 SKRSEQPLIHLNCASLAENLAESEFFGHAKGAFTGADHARQGKFQLAHGGTLFLDEIGEL 296 Query: 292 SLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVF 351 L LQ+KLLRVLQ G+IQ VG+D VDVRV+AATNR+L++EV GRFRADL+HRLSV+ Sbjct: 297 PLVLQSKLLRVLQSGEIQTVGEDEVKYVDVRVIAATNRNLKKEVAEGRFRADLYHRLSVY 356 Query: 352 PLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAI 411 PL+V PLR+R +DV+LLAG+F EQ + + ++ LS A+ LL Y +PGNVRELEH I Sbjct: 357 PLTVAPLRQRENDVVLLAGFFVEQTARKLAIKQLKLSVDAQLLLTQYQWPGNVRELEHVI 416 Query: 412 HRAVVLARATRSGDEVI-LEAQH------------FAFPEVTLPTPEVAAVPVVKQN--L 456 RA + A+ ++ +I ++ +H + P T T ++ + +QN L Sbjct: 417 SRAALKAKQSQWQQAIITIKPEHCELNLSPSNTTQLSLPASTTNTTTGSSTNIAEQNLSL 476 Query: 457 REATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 ++AT+ F I Q L Q+++NWA+ AR L+ D ANL RLAKRLG+ Sbjct: 477 KQATDTFTHHLISQQLEQHNYNWASAARTLKVDRANLVRLAKRLGI 522 >UniRef50_Q07WT9 Transcriptional regulator, Fis family protein n=4 Tax=Gammaproteobacteria RepID=Q07WT9_SHEFN Length = 526 Score = 431 bits (1109), Expect = e-119, Method: Compositional matrix adjust. Identities = 243/519 (46%), Positives = 323/519 (62%), Gaps = 32/519 (6%) Query: 10 NIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLAKDVLGRRFA 69 +I +L R + +R+ RLI +++ + CD ALL+ +P+A+ GL + L R+F+ Sbjct: 8 DIVEDLNRDLIKSERYLRLILAIQRAIPCDVVALLKLKHDHLVPVAVVGLKQQALARQFS 67 Query: 70 LEGHPRLEAIARAGDVVRFPADSELPDPYDGLIP-GQESLKVHACVGLPLFAGQNLIGAL 128 + HPRL+ I + RF ADS LPDPYDGL+ G E L VH C+G ++ G L Sbjct: 68 INHHPRLQQILANPHITRFDADSTLPDPYDGLVDDGSEQLHVHDCMGSTIYIDGKAWGVL 127 Query: 129 TLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQ--------NMLPGDATPFE 180 TLD M+ FD + E R A A A+S + IE LE Q + A P Sbjct: 128 TLDAMKAGSFDSLNPTETRAYIAAVAAAISTSEHIEALEVQVERNHQVAQCMLATAGP-- 185 Query: 181 AVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLV 240 + +IG S +T L EI VA SDL+VLI+GETG GKELVAK+IH+ S R+ PLV Sbjct: 186 ----SSIIGNSVAITDLLSEINTVAVSDLSVLITGETGVGKELVAKSIHQQSRRSEQPLV 241 Query: 241 YLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLL 300 +NCAALPES+ ESELFGHVKGA++GA+S+R G+FE+AD GTLFLDE+GEL LA+QAKLL Sbjct: 242 QINCAALPESIVESELFGHVKGAYSGAVSDRRGRFELADGGTLFLDEVGELPLAVQAKLL 301 Query: 301 RVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRE 360 R LQ G+IQRVG D + VDVR++AATNR+L+ EV GRFRADL+HRLSV+PL VPPLRE Sbjct: 302 RALQNGEIQRVGSDNIIVVDVRIVAATNRNLQLEVKEGRFRADLYHRLSVYPLPVPPLRE 361 Query: 361 RGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVV--LA 418 RG DVILLAGYF E+ + + G++++ L A L Y +PGNVRELEH + RA + ++ Sbjct: 362 RGKDVILLAGYFLEKSQHQLGVAKLRLQQTAIEQLTQYHWPGNVRELEHLLSRAALRAIS 421 Query: 419 RATRSGDEVILEAQHFAFPEVTLPT--PEVAAVPVVKQN-------------LREATEAF 463 R + + H V T P +A V ++ N LR++T+ + Sbjct: 422 EQGRHASIISISRVHLGSEFVVSHTVAPAIAEVDIINDNNAAAALSQVLTLGLRDSTDEY 481 Query: 464 QRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 QR+ I+ LA N AA AR L+ D +NL R +RLGL Sbjct: 482 QRQIIQTVLATERGNLAAVARSLQLDRSNLIRTMRRLGL 520 >UniRef50_Q12MS3 Sigma-54 factor, interaction region n=2 Tax=Alteromonadales RepID=Q12MS3_SHEDO Length = 538 Score = 426 bits (1095), Expect = e-118, Method: Compositional matrix adjust. Identities = 247/533 (46%), Positives = 326/533 (61%), Gaps = 38/533 (7%) Query: 7 VLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLAKDVLGR 66 L +IA++L + + + +QR +T + QV+ CDA ALL Y + +P+A+DGL +VLG Sbjct: 5 TLLDIALDLSQSLPKKALYQRFMTAVNQVMPCDAVALLEYQGHELVPVAVDGLLPEVLGM 64 Query: 67 RFALEGHPRLEAIARAGDVVRFPADSELPDPYDG--LIPGQESLKVHACVGLPLFAGQNL 124 F+ E HPRL+AI + +RF ADSEL DPYDG +I + L VHAC+G LF L Sbjct: 65 GFSPEDHPRLQAIMASKQPIRFNADSELADPYDGYLVIDPKRVLDVHACIGCSLFVEGRL 124 Query: 125 IGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNM-LPGDATPFE--A 181 +G LTLD + FD D + +AALAA + N L+ QL+ Q L + + F+ Sbjct: 125 VGVLTLDALNVGAFDAIDDITIATLAALAAATIRNVNLLNQLDRQQYKLDDNDSVFKQKP 184 Query: 182 VKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVY 241 +K++ IG +P M LK +I IVA S+L+V+I GETG GKELVA+++H S R LV Sbjct: 185 LKKSDFIGETPCMQALKDDIRIVANSELSVIIGGETGVGKELVARSLHAQSKRRAQALVQ 244 Query: 242 LNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLR 301 +NCAALP+++AESELFGH KGAFTGA +R GKFE+A GTLFLDE+GELSL LQAKLLR Sbjct: 245 VNCAALPDTLAESELFGHSKGAFTGAAKDRMGKFELAHQGTLFLDEVGELSLELQAKLLR 304 Query: 302 VLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRER 361 V+Q G+IQR+G DR + VDVR++AA+NR+L + V G FR DL+HRL V+PL+VPPLRER Sbjct: 305 VIQEGEIQRIGLDRNIHVDVRIIAASNRNLLQRVKEGLFREDLYHRLCVYPLNVPPLRER 364 Query: 362 GDDVILLAGYFCEQCRLRQGLSR---VVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLA 418 DD+ LL G + + GLS V L+ A LQ Y +PGNVREL+H + RA + A Sbjct: 365 QDDIPLLCGNILTNLKHKIGLSSAKTVRLTQAAMQKLQGYPWPGNVRELQHVLMRAALKA 424 Query: 419 RATRSGDEVILEAQHFAF-------------------PEVTLPTP----------EVAAV 449 A G VI + H F P+ T E Sbjct: 425 SAEAKGITVI-QLHHLTFACEPMSQGLTELTAFNSNSPDSNPSTSDETFAAANREEKVEP 483 Query: 450 PVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 PV+ ++ + FQR+ IRQ+L N WA AR L+ D NLHR AKRLGL Sbjct: 484 PVISRSFNDRVADFQRQVIRQSLDDNSQVWAKAARQLQLDRGNLHRQAKRLGL 536 >UniRef50_Q9K4U8 Nitric oxide reductase transcription regulator norR2 n=45 Tax=Proteobacteria RepID=NORR2_RALEH Length = 521 Score = 422 bits (1084), Expect = e-116, Method: Compositional matrix adjust. Identities = 246/517 (47%), Positives = 312/517 (60%), Gaps = 23/517 (4%) Query: 6 DVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLAKDVLG 65 ++LA++ +L H R QRL++ LR C A ALLR + P+A+DGL +D LG Sbjct: 9 ELLADLVTDLP----HAVRLQRLVSMLRTHFRCGAVALLRLEEDHLRPVAVDGLVRDALG 64 Query: 66 RRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQ--ESLKVHACVGLPLFAGQN 123 RRFA+ HPRL AI V F DS LPDPYDGLI E L VH C+G L Sbjct: 65 RRFAVGLHPRLAAILARRGVTCFHHDSMLPDPYDGLIDEHVGEPLPVHDCMGTSLAVDGQ 124 Query: 124 LIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVK 183 GALTLD + FD + EL+ + + A+ L ++ + + G E Sbjct: 125 PWGALTLDALAIGTFDAAAQAELQRLTVIVEAAIRTTRLEGEIRALQLARGTPEADEGTA 184 Query: 184 Q-----TQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNP 238 Q ++IG S + L E+E+VA +DL VL+ GETG GKEL A +H S R P Sbjct: 185 QHGDIGGEIIGQSEAIANLLHELEVVADTDLPVLLLGETGVGKELFAHRLHRQSRRRAQP 244 Query: 239 LVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAK 298 LV++NCAALPES+AESELFGH +GAF+GA R G+FE AD GTLFLDE+GEL LA+QAK Sbjct: 245 LVHVNCAALPESLAESELFGHARGAFSGATGERPGRFEAADGGTLFLDEVGELPLAIQAK 304 Query: 299 LLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPL 358 LLR LQ G+IQR+G DR RV+VRV+AATNR+LRE V G FRADL+HRLSV+P+ +PPL Sbjct: 305 LLRTLQNGEIQRLGSDRPRRVNVRVIAATNRNLREHVRDGSFRADLYHRLSVYPIPIPPL 364 Query: 359 RERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVV-- 416 RERG+DV+LLAG F E R R GL + LS GA++ L+ Y +PGNVRELEH I RA + Sbjct: 365 RERGNDVLLLAGRFLELNRARLGLRSLRLSGGAQDALRSYRWPGNVRELEHVISRAALRA 424 Query: 417 LARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQ----------NLREATEAFQRE 466 ++R D V LE + + +P A + LR+A E QR Sbjct: 425 VSRGAGRNDIVTLEPELLDLDGLEVPAAHHAGAGMASAFAAPALAAGITLRDAVEQTQRA 484 Query: 467 TIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 I QAL NWA AR L D +NLH+LA+RLG K Sbjct: 485 CIEQALKDQGGNWAQAARQLGIDASNLHKLARRLGCK 521 >UniRef50_Q1R0E5 Transcriptional regulator, NifA subfamily, Fis family n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1R0E5_CHRSD Length = 522 Score = 404 bits (1039), Expect = e-111, Method: Compositional matrix adjust. Identities = 237/497 (47%), Positives = 297/497 (59%), Gaps = 17/497 (3%) Query: 23 DRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARA 82 +R+ RL+ L DAS L+ P+A+ GL +V GRRFAL+ HPRL AIA Sbjct: 26 ERWARLLAALVGSYPADASTLMVAHDDGLQPVAVLGLDDEVRGRRFALDAHPRLAAIAAH 85 Query: 83 GDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFS 142 V RFP DS LPDP+DGL+ S VH C+G+ L G L+G LTLD + P Sbjct: 86 PGVCRFPLDSTLPDPFDGLLDDASS-HVHDCMGVALRDGDRLLGMLTLDALTPGCLAAID 144 Query: 143 DEELRLIAALAAGALSNALLIEQLESQNMLPGDAT-PFEAVKQTQMIGLSPGMTQLKKEI 201 D+EL A L A L A + S+ D T +A + ++ SP M QL + + Sbjct: 145 DDELLAAAGLMATCLRLAQQLSDTRSRLNQALDQTFDHDAPRHSEPAWHSPAMRQLDESL 204 Query: 202 EIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVK 261 +VA +D++VL+ GETG GKE +A+ +H S R PLV +NCAALPE++ ESELFGH + Sbjct: 205 ALVAPTDMSVLLHGETGVGKERLARRVHALSSRRKGPLVRVNCAALPEALIESELFGHRR 264 Query: 262 GAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDV 321 GAF+GA+ + G F MA GTL LDEIGEL L +Q KLLRVLQ G+IQ +G + RV+V Sbjct: 265 GAFSGAVRDHRGHFAMAHEGTLMLDEIGELPLTMQPKLLRVLQEGEIQPLGSETPQRVNV 324 Query: 322 RVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQG 381 RV+A TNR L +EV AGRFR DL+HRLSVFPL VPPL ER DDV+LLAG F E R+R G Sbjct: 325 RVIAVTNRALDQEVAAGRFRKDLYHRLSVFPLRVPPLCERRDDVLLLAGGFLEDNRIRLG 384 Query: 382 LSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDE--------VILEAQH 433 ++ + L A L + +PGN+RELEH + RA + A R D V + H Sbjct: 385 VANLRLEPEAERALLAWHWPGNIRELEHTLGRAALRAFGERPRDTRHARRDAVVRIATHH 444 Query: 434 FAFPEVTLPTPEVAAVPVVKQN-------LREATEAFQRETIRQALAQNHHNWAACARML 486 P P P A VV LREA EAFQR+ I +AL + NWAA AR L Sbjct: 445 LELPSSEAPIPRPADANVVTSTEAAPSMPLREAVEAFQRQHIARALDTHDGNWAATARAL 504 Query: 487 ETDVANLHRLAKRLGLK 503 TD NLHRLAKRLGLK Sbjct: 505 RTDSGNLHRLAKRLGLK 521 >UniRef50_A6FFF2 Anaerobic nitric oxide reductase transcription regulator n=1 Tax=Moritella sp. PE36 RepID=A6FFF2_9GAMM Length = 502 Score = 380 bits (976), Expect = e-104, Method: Compositional matrix adjust. Identities = 224/501 (44%), Positives = 298/501 (59%), Gaps = 40/501 (7%) Query: 43 LLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGD------VVRFPADSELPD 96 LL+ + IP A +GL + +GR F + HPR E I D V RF D ELPD Sbjct: 2 LLKLEGDNLIPKAANGLQIEAMGRHFPIAEHPRFEQILAHYDNEVQKKVHRFDTDCELPD 61 Query: 97 PYDGLIPGQE-SLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAG 155 PYDGLI + L VH C+G L G +T+D + P +FD + L + L Sbjct: 62 PYDGLIQTPDGQLNVHDCMGAVLVIDNKPWGIVTMDALNPQRFDSLDPKILNSMIGLTEV 121 Query: 156 ALSNALLIEQLES--QNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLI 213 + A LI L+ Q A+ +MIG SP M L EI++VA SDL LI Sbjct: 122 VIKTANLIFSLDQKVQRQEQVTASLISDKFSEKMIGSSPAMNMLNLEIDLVADSDLAALI 181 Query: 214 SGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSG 273 GE+GTGKELVA+ IH +S RA L+ +NCAALPE++ ESELFGHV GAFTGA NR G Sbjct: 182 YGESGTGKELVARRIHMSSKRAKEALITVNCAALPETMVESELFGHVAGAFTGATKNRLG 241 Query: 274 KFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLRE 333 KFE+AD GTLFLDEIGEL L++QAKLLRV+Q+G++QR+G D+ +VDVR++ ATNRDL + Sbjct: 242 KFELADCGTLFLDEIGELPLSIQAKLLRVIQFGELQRLGSDKPHKVDVRLITATNRDLAK 301 Query: 334 EVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARN 393 EV GRFR DL+HRL+V+PL+VP LRERG+D++LLAG F + + + GL+ + L+ A Sbjct: 302 EVAEGRFRDDLYHRLTVYPLTVPNLRERGNDILLLAGSFLAKIQRKVGLNNLTLAKDAER 361 Query: 394 LLQHYSFPGNVRELEHAIHRAVVLARA-TRSGDE-VILEAQHFAF------PEVTLPT-- 443 L Y +PGNVRELEH + RA + A A R D V+LE+ +L T Sbjct: 362 ALLAYEWPGNVRELEHLLSRASLRAAARNRKNDRVVVLESSDLDIQSAIGESNASLHTNM 421 Query: 444 ---PEVAAVPVVK------------------QNLREATEAFQRETIRQALAQNHHNWAAC 482 +V A +V NL++ T+ FQ + I++ LA+++ N AA Sbjct: 422 NTDSDVIAKGMVSVGHVAGQNDIVISTADNDNNLKQITDDFQTQFIKKVLAEHNGNSAAT 481 Query: 483 ARMLETDVANLHRLAKRLGLK 503 AR + D +NLHRL KRL ++ Sbjct: 482 ARAIGVDRSNLHRLMKRLDIQ 502 >UniRef50_A9FR32 Sigma-54 dependent transcriptional regulator n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FR32_SORC5 Length = 518 Score = 308 bits (790), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 184/414 (44%), Positives = 244/414 (58%), Gaps = 15/414 (3%) Query: 7 VLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAID-GLAKDVLG 65 L + + L + QR++ L +V DA ++L + +A GL+ LG Sbjct: 2 TLLDAVLSLSEAPARDEALQRILRALARVTAADALSVLTAAEDGSVGVAAQIGLSPAALG 61 Query: 66 RRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQ--ESLKVHACVGLPLFAGQN 123 F HPRL +A +RF SE PDPY G + G E +HAC+ +PL Sbjct: 62 MSFRPAEHPRLRRATQAAGPIRFLDPSE-PDPYSGWLLGSPGEIHPIHACMAVPLHVQGR 120 Query: 124 LIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNML-PGDATPFEAV 182 L G LTLD P DE+ R+ A L AGAL L E++ + P P Sbjct: 121 LAGLLTLDACDPHGLRGLRDEDARVFAGLCAGALR---LDAGPEARCAIGPASIGPAPGS 177 Query: 183 KQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYL 242 + S GM ++++EI ++A + VL++GETG GKELVA+A+HE SPRA LV + Sbjct: 178 R-------SAGMQRIEREIAVLAPLSVPVLVTGETGVGKELVARALHERSPRASRALVIV 230 Query: 243 NCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRV 302 NCAA+P + ESELFGH +GAFTGA + R+G+FE A GT+FLDEIGEL + QA+LLR Sbjct: 231 NCAAIPAQLVESELFGHRRGAFTGATAARAGRFEAAHGGTIFLDEIGELPFSAQAQLLRA 290 Query: 303 LQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERG 362 LQ G+IQ VG+DR RVD RV+AATNRDLR EV GRFRADLFHRL V+P+ VPPLRER Sbjct: 291 LQEGEIQPVGEDRARRVDARVVAATNRDLRREVAEGRFRADLFHRLWVYPICVPPLRERR 350 Query: 363 DDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVV 416 +D+ L F + G +RV + A L ++PGNVREL++A+ RAV+ Sbjct: 351 EDIPALCERFAAEIAAELGATRVDFTEPALGALAQGAWPGNVRELKNAVERAVL 404 >UniRef50_Q7M8U4 TRANSCRIPTIONAL REGULATOR (NIFA FAMILY) n=1 Tax=Wolinella succinogenes RepID=Q7M8U4_WOLSU Length = 512 Score = 282 bits (721), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 151/322 (46%), Positives = 214/322 (66%), Gaps = 8/322 (2%) Query: 112 ACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQL--ESQ 169 + + +P + + ++G L G+ + + +E+ I +AA ++ A I Q E + Sbjct: 126 SYLAVPALSQERILGVL---GVSLTKHSMSDFDEMVTILTIAASLMAQARRIHQSIHEEK 182 Query: 170 NMLPGDATPF--EAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKA 227 + + + E +KQ+++IG SP + ++ + I +A S VLI GETGTGKEL+AKA Sbjct: 183 KRISEEKLYYKEELLKQSEIIGYSPPIKRVSEIIAKIAPSSATVLIRGETGTGKELIAKA 242 Query: 228 IHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDE 287 IH SPR P + LNCAA+PE++ ESELFGH KGAFT A R G+FE+AD GTLFLDE Sbjct: 243 IHNYSPRKEKPYIKLNCAAIPENLLESELFGHEKGAFTDARETRKGRFELADGGTLFLDE 302 Query: 288 IGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHR 347 +G+LSL LQAK+LR+LQ + +RVG + ++VDVR++AATNRDL E V G FR DLF+R Sbjct: 303 VGDLSLPLQAKILRILQEQEFERVGGSKTIKVDVRIVAATNRDLEEMVRMGDFREDLFYR 362 Query: 348 LSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVREL 407 L+V P+ PPLR+RGDDVILL+ YF E+ R + L+ A LL+HY +PGN+REL Sbjct: 363 LNVIPIFSPPLRDRGDDVILLSRYFLERFCKRHA-KELHLTPKAEELLKHYDWPGNIREL 421 Query: 408 EHAIHRAVVLARATRSGDEVIL 429 E++I R V+LA + +EV+L Sbjct: 422 ENSIERLVLLAPSESIDEEVVL 443 >UniRef50_A9ET26 Transcriptional regulator n=2 Tax=Myxococcales RepID=A9ET26_SORC5 Length = 648 Score = 281 bits (718), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 171/403 (42%), Positives = 244/403 (60%), Gaps = 36/403 (8%) Query: 107 SLKVHACVGLPLFAGQNLIGALTLDGMQPDQ-FDVFSDEELRLIAALAAGALSNALLIEQ 165 ++K+ + + PL + +IGAL + + FD + L + A+ A+ L NA+L+ Sbjct: 253 AMKLSSVMCAPLLSQGQIIGALYVGNDKIKHLFDRAQLDLLSIFASQASLILQNAMLL-- 310 Query: 166 LESQNMLPGDATPFEA----VKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGK 221 N L D A K ++IG P M ++ ++++ VAA+D++VLI+GETGTGK Sbjct: 311 ----NALRADKAKLVAELHDKKFGEIIGACPSMLEVFRKLQKVAATDISVLITGETGTGK 366 Query: 222 ELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNG 281 EL+A+ +H SPR P V +NC A+PE++ ESELFGHVKGAFTGAI++R GKF++AD G Sbjct: 367 ELIARELHRRSPRDGGPFVTINCGAIPENLIESELFGHVKGAFTGAIASRPGKFQIADKG 426 Query: 282 TLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFR 341 TLFLDEIGEL L LQ KLLR LQ + RVGD + +VD+R++AATNR+L EE+ AG FR Sbjct: 427 TLFLDEIGELPLNLQVKLLRALQERVVFRVGDSKPEKVDIRIVAATNRNLEEEIRAGNFR 486 Query: 342 ADLFHRLSVFPLSVPPLRERGDDV-----ILLAGYFCEQCRLRQGLSRVVLSAGARNLLQ 396 DL++RL+V L +PPLRERGDDV +LL+ Y E +G S LSA ++ Sbjct: 487 EDLYYRLNVVNLWLPPLRERGDDVLIIAKVLLSKYADELGSAVRGFSPAALSA-----IK 541 Query: 397 HYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNL 456 Y +PGN+R+LE+ I +A+VL D+ +L + P E A +P L Sbjct: 542 KYPWPGNIRQLENRIKKALVLC------DQALLAVEDLDLG----PGAETAIMP-----L 586 Query: 457 REATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKR 499 +A E FQR + +AL +N+ N AR L D + R ++ Sbjct: 587 EKAKEEFQRRYVLEALERNNGNRTQTARDLGVDPRTIFRYLEK 629 >UniRef50_Q3AR86 DNA-binding protein Fis / transcriptional regulator, Fis family n=11 Tax=Chlorobiaceae RepID=Q3AR86_CHLCH Length = 549 Score = 277 bits (709), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 175/451 (38%), Positives = 254/451 (56%), Gaps = 55/451 (12%) Query: 79 IARAGDVVRFPADSELPDPYDGLIPGQESLKVHAC-VGLPLFAGQNLIGALTLD------ 131 + + G V P+ + P D ++ K C + +P+ AG +IG L+ D Sbjct: 88 VVKTGKAVIVPSIQDEPLFLDRTGSRAQAKKEELCFICIPIKAGSEIIGTLSADRHVEPV 147 Query: 132 --------GMQPDQFD------VFSDEELRLIAALAAGALSNALLIEQLESQNMLP-GDA 176 Q D D F ++L +IAA+ + A+ L + S+N+ + Sbjct: 148 TADEHRRKTRQTDDRDERIDKLQFYVDQLSIIAAMISQAVRLKQLAYEAGSKNVQDLSNL 207 Query: 177 TPFEAV-------------------KQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGET 217 PF A + +IG + M L I+ +A + L+ GE+ Sbjct: 208 PPFAASIPPRSEDRQVNAIPPPSPDRPANIIGNTKPMVSLYSMIDKIAKTSATTLVLGES 267 Query: 218 GTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEM 277 G GKELVA AIH S RA P + NCAALPE++ ESELFGH KGAFTGA++ R G+FEM Sbjct: 268 GVGKELVASAIHFKSRRAEKPFIKFNCAALPENIVESELFGHEKGAFTGALATRHGRFEM 327 Query: 278 ADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLA 337 A+NGT+FLDE+GELSL++QAKLLR+LQ + +RVG + ++VDVRV+AATNR+L E + Sbjct: 328 ANNGTIFLDEVGELSLSVQAKLLRILQEKEFERVGGSKTIKVDVRVIAATNRNLEELIRQ 387 Query: 338 GRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRL--RQGLSRVVLSAGARNLL 395 G+FR DLF+RL++FP++VPPLRER D++LLA YF E+ ++G+ R+ S A ++L Sbjct: 388 GQFREDLFYRLNIFPITVPPLRERKTDILLLADYFVEKYNKANQKGVRRI--STTAIDML 445 Query: 396 QHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQN 455 Y +PGNVREL++ I RAV+L S D VI + P TL T E + P + Sbjct: 446 MRYHWPGNVRELQNCIERAVIL-----SEDNVI---HGYHLPP-TLQTAESSGTPYTG-S 495 Query: 456 LREATEAFQRETIRQALAQNHHNWAACARML 486 L++ +A ++E I +AL + N + A L Sbjct: 496 LQQKLDAIEKEMIIEALKRTQGNMSRAAMQL 526 >UniRef50_B2S230 Formate hydrogenlyase transcriptional activator FhlA n=3 Tax=Treponema RepID=B2S230_TREPS Length = 600 Score = 277 bits (709), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 163/339 (48%), Positives = 213/339 (62%), Gaps = 15/339 (4%) Query: 96 DPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQF--DV--FSDEELRLIAA 151 D Y LIP ++ H+C+ PL+ IG LTLD +QF DV F +LI+ Sbjct: 166 DTYTELIPMPQN---HSCLIAPLYIDDTPIGMLTLDHRLCEQFTPDVVRFITTLSKLISL 222 Query: 152 LAAGALSNALLIEQ----LESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAAS 207 A ++ L ++ L +N L +P A K MIG SP T+ I++VAAS Sbjct: 223 AVAQTDASETLSQKSHALLTERNALLAPQSP--AFKN--MIGTSPAWTRTLDAIKLVAAS 278 Query: 208 DLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGA 267 DL VL+ GETGTGKELVA+ +H+ S R+ P V +NC+AL S+AESELFGH KGAF+GA Sbjct: 279 DLPVLVCGETGTGKELVARTVHQLSTRSDKPFVPVNCSALVHSLAESELFGHEKGAFSGA 338 Query: 268 ISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAAT 327 + G+FE+A GTLFLDE+G+L L LQ KLLRVLQ G +RVG +R + V VR++AAT Sbjct: 339 VGTHRGRFELAHGGTLFLDEVGDLPLELQPKLLRVLQDGVFERVGGERSVSVSVRIIAAT 398 Query: 328 NRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVL 387 N +L E V G+FR DL +RL VFPLS+PPLRER +DV LLA +F ++ + R G R L Sbjct: 399 NINLSEAVTQGKFREDLLYRLDVFPLSLPPLRERAEDVALLAEHFIQKIKTRPGFERTQL 458 Query: 388 SAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDE 426 S A + +FPGNVREL + + RA +LAR G E Sbjct: 459 SPSAFKKIFSLTFPGNVRELRNLLERAALLARGDTIGAE 497 >UniRef50_D2R1I6 Sigma 54 interacting domain protein n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R1I6_9PLAN Length = 539 Score = 274 bits (701), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 164/376 (43%), Positives = 235/376 (62%), Gaps = 19/376 (5%) Query: 109 KVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLES 168 ++ + G PL ++G L L Q F E LR+IA A A++NA +++++S Sbjct: 142 RIASFAGHPLLHRGEVLGVLGLFARQSPGESCF--EWLRMIADHLAAAIANARALDEIDS 199 Query: 169 QNMLPGDATPF--EAVKQT----QMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKE 222 + E V+Q +IG SP + ++IE+VA +D VLI GE+GTGKE Sbjct: 200 LKKRLEQENEYLREEVQQITSFGDLIGQSPSLQATTRQIELVAPTDSAVLILGESGTGKE 259 Query: 223 LVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGT 282 +VA+ +H S RA PL+ +NCAA+P + ESE FGH KG+FTGA+ +R+G+FE+AD GT Sbjct: 260 VVARELHRRSRRADRPLIKVNCAAIPRELYESEFFGHAKGSFTGALRDRAGRFELADRGT 319 Query: 283 LFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRA 342 LFLDEIGE+ L LQAKLLRVLQ G+++R+G++R R+DVR++AATNR+LR E AGRFR Sbjct: 320 LFLDEIGEIPLDLQAKLLRVLQEGELERIGEERTRRIDVRIIAATNRNLRTEAEAGRFRQ 379 Query: 343 DLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPG 402 DLF+RLSVFP+ +PPLR+R +D+ LLA ++ ++ + G R L+ LQ Y +PG Sbjct: 380 DLFYRLSVFPMELPPLRKRVEDIPLLAEHYLDRFSRQLGRPRPRLTLAHVQDLQRYPWPG 439 Query: 403 NVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEA 462 NVREL+H + RA ++A + F FP+ L E A P Q++ A E Sbjct: 440 NVRELQHVLERACIVATDGK---------LQFDFPKDQLKRREEPAEPSSPQHILTAAEL 490 Query: 463 FQRE--TIRQALAQNH 476 + E IR+ALA ++ Sbjct: 491 RELEASNIRKALAASN 506 >UniRef50_B3QSR6 Transcriptional regulator, NifA, Fis Family n=2 Tax=Bacteria RepID=B3QSR6_CHLT3 Length = 557 Score = 274 bits (701), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 140/298 (46%), Positives = 198/298 (66%), Gaps = 10/298 (3%) Query: 186 QMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCA 245 +IG + M + K I+ +A ++ VLI GE+G GKELVA AIH S RA +P + NCA Sbjct: 242 NIIGNAKSMRVVFKMIDKIAPTNATVLILGESGVGKELVANAIHYKSQRAASPFIKFNCA 301 Query: 246 ALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQY 305 ALPES+ ESELFGH +GAFTGA + R G+FE+A+ GT+FLDE+GELSL++QAKLLR+LQ Sbjct: 302 ALPESIVESELFGHERGAFTGASATRKGRFELANTGTIFLDEVGELSLSIQAKLLRILQE 361 Query: 306 GDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDV 365 + +RVG ++ ++ DVR++AATNR+L EE+ G+FR DLF+RL++FP++VPPLRER D+ Sbjct: 362 KEFERVGGNKTIKADVRIIAATNRNLEEEIQEGKFREDLFYRLNIFPVTVPPLRERKSDI 421 Query: 366 ILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGD 425 +LLA YF E+ G +S A ++L Y +PGNVRELE+ + RAV+L+ D Sbjct: 422 LLLADYFVEKYNQMNGKGVRRISTTAIDMLMRYHWPGNVRELENCVERAVILS------D 475 Query: 426 EVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACA 483 + ++ H TL T E + P L++ +A + E I +AL N + A Sbjct: 476 DGVIHGYHLP---PTLQTAESSGTPCAGP-LQQRLDALEYELIVEALKNTKGNMSKAA 529 >UniRef50_P05407 Nif-specific regulatory protein n=11 Tax=Rhizobiales RepID=NIFA_BRAJA Length = 582 Score = 271 bits (694), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 160/327 (48%), Positives = 210/327 (64%), Gaps = 21/327 (6%) Query: 112 ACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALA-------------AGALS 158 A +G+P+ ++G LT+D + P+ + + RL+A +A AG Sbjct: 141 AFIGVPIRVDSTVVGTLTIDRI-PEGSSSLLEYDARLLAMVANVIGQTIKLHRLFAGDRE 199 Query: 159 NALL-IEQLESQNMLPGDATPFEAVKQTQ---MIGLSPGMTQLKKEIEIVAASDLNVLIS 214 +L+ ++LE Q + G P KQ Q +IG SP ++ L ++I +VA S+ VL+ Sbjct: 200 QSLVDKDRLEKQTVDRGP--PARERKQLQAHGIIGDSPALSALLEKIVVVARSNSTVLLR 257 Query: 215 GETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGK 274 GE+GTGKELVAKAIHE+S RA P V LNCAALPE+V ESELFGH KGAFTGA+S R G+ Sbjct: 258 GESGTGKELVAKAIHESSVRAKRPFVKLNCAALPETVLESELFGHEKGAFTGAVSARKGR 317 Query: 275 FEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREE 334 FE+AD GTLFLDEIGE+S QAKLLRVLQ + +RVG + ++VDVRV+AATNR+L E Sbjct: 318 FELADKGTLFLDEIGEISPPFQAKLLRVLQEQEFERVGSNHTIKVDVRVIAATNRNLEEA 377 Query: 335 VLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNL 394 V FRADL++R+SV PL +PPLRER D+ LLA F + G S + L A A ++ Sbjct: 378 VARSEFRADLYYRISVVPLLLPPLRERRSDIPLLAREFLRKFNSENGRS-LTLEASAIDV 436 Query: 395 LQHYSFPGNVRELEHAIHRAVVLARAT 421 L FPGNVRELE+ I R L+ T Sbjct: 437 LMSCKFPGNVRELENCIERTATLSAGT 463 >UniRef50_C1DXU0 Acetoacetate metabolism regulatory protein AtoC (Ornithine/argininedecarboxylase inhibitor) (Ornithine decarboxylase antizyme) n=8 Tax=Aquificales RepID=C1DXU0_SULAA Length = 451 Score = 271 bits (693), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 143/347 (41%), Positives = 221/347 (63%), Gaps = 13/347 (3%) Query: 163 IEQLESQNMLPGDATPFEAV--KQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTG 220 IE++E Q + F+ KQ ++IG SP + +LK++IE VA ++ V+I GE GTG Sbjct: 113 IEKVEKQIKVKQSLEYFKEKEEKQIEIIGNSPKIVELKRQIEKVAKTNAWVMILGENGTG 172 Query: 221 KELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADN 280 KELVAK+IH SPR P V +NCAA+P+ + E+E FG+ KGAFT A + + GK E+AD Sbjct: 173 KELVAKSIHYQSPRKDYPFVDINCAAIPDELFEAEFFGYEKGAFTNAFTRKIGKLELADK 232 Query: 281 GTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRF 340 GTLFLDE+ ++SL+ QAKLLRVL+ R+G + + VD+RV++ATN+D+++EV G F Sbjct: 233 GTLFLDEVADMSLSSQAKLLRVLEEKQFSRLGSNTKITVDLRVISATNKDIQKEVEKGTF 292 Query: 341 RADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSF 400 R DL RLSV P+ VPPLRER +D++LLA YF + + + +LS +N +Y++ Sbjct: 293 RQDLAFRLSVIPIYVPPLREREEDILLLANYFLRKFSVENKVEPPILSDEVKNTFLNYNW 352 Query: 401 PGNVRELEHAIHRAVVLARATRSGDEVILEAQHF---AFPEVTLPTPEVAAVPVVKQNLR 457 PGNVREL++ + R V+L E I+ + V L E ++P+ + L+ Sbjct: 353 PGNVRELKNLMERLVIL------NSESIIYNKDLPPHMLGNVKLEKEE--SIPITIRPLK 404 Query: 458 EATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLKD 504 +A E +++ I++AL ++N A+ L+ D+++L+R K+ L++ Sbjct: 405 DAKEELEKQMIKKALKVYNNNLKEIAKALDIDLSSLYRKIKQYNLEE 451 >UniRef50_B9XM81 Sigma54 specific transcriptional regulator with PAS/PAC sensor, Fis family n=1 Tax=bacterium Ellin514 RepID=B9XM81_9BACT Length = 501 Score = 271 bits (692), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 135/259 (52%), Positives = 187/259 (72%) Query: 187 MIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAA 246 +I SP + ++ ++IE+VA + NVLI GE+GTGKELVA+AIH+ S R PLV +NCA+ Sbjct: 180 IIASSPALKKVLQQIEVVAPTQANVLILGESGTGKELVARAIHDLSERKGKPLVRVNCAS 239 Query: 247 LPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYG 306 +P+ + ESE FGHV+GAFTGAI +R G+FE+A+ G+LFLDEIGE+ L LQ+KLLRVLQ G Sbjct: 240 IPKELFESEFFGHVRGAFTGAIKDRVGRFELANGGSLFLDEIGEIPLDLQSKLLRVLQEG 299 Query: 307 DIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVI 366 +RVG+DR V+VR++AATNRDL E AGRFR DL++RLSVFP+ +P LRER +D+ Sbjct: 300 QFERVGEDRTRTVNVRIIAATNRDLLTEAKAGRFRLDLYYRLSVFPIEIPALRERPEDIG 359 Query: 367 LLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDE 426 LA +F +Q R G++R L+ L+ Y +PGNVREL++ + RAV+LAR+ R E Sbjct: 360 PLAEHFVKQSANRLGVTRPRLTKADVRELEGYDWPGNVRELQNVVERAVILARSGRLKFE 419 Query: 427 VILEAQHFAFPEVTLPTPE 445 + ++ P +P P+ Sbjct: 420 LGNNSERPFPPSARVPAPD 438 >UniRef50_Q1D574 Sigma-54 dependent transcriptional regulator, Fis family n=7 Tax=Myxococcales RepID=Q1D574_MYXXD Length = 630 Score = 270 bits (691), Expect = 8e-71, Method: Compositional matrix adjust. Identities = 158/396 (39%), Positives = 238/396 (60%), Gaps = 20/396 (5%) Query: 107 SLKVHACVGLPLFAGQNLIGALTLDGMQ-PDQFDVFSDEELRLIAALAAGALSNALLIEQ 165 +L+VH+ + +PL +L G L + + ++F+ S + L + AA A+ L NA+L+ Sbjct: 235 NLRVHSVMCVPLMQKGDLFGVLYVGNDRLVNRFEPKSADMLTIFAAQASLILQNAMLVSD 294 Query: 166 LESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVA 225 L+ N E + ++G GM + K I+ +A +D++VLI+GETGTGKEL+A Sbjct: 295 LKLDNT--ELRRKLEDQRYGDIVGACQGMRDVYKRIDKIAPTDISVLITGETGTGKELIA 352 Query: 226 KAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFL 285 + IH S RA P + +NC A+PE++ ESELFGHVKGAFTGA++ ++GKF+ A GTLFL Sbjct: 353 REIHRRSTRAKGPFITINCGAIPENLLESELFGHVKGAFTGAVATKAGKFQAAIGGTLFL 412 Query: 286 DEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLF 345 DEIGE+ L LQ KLLR LQ + +VGD+R VD+RV+AATN+ L +EV FR DL+ Sbjct: 413 DEIGEMPLQLQVKLLRALQEKVVYKVGDNRGEPVDIRVVAATNKVLEDEVKKNTFREDLY 472 Query: 346 HRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVR 405 +RL+V L +PPLRERG+DV++L +F ++ + A ++ Y +PGN+R Sbjct: 473 YRLNVVTLKLPPLRERGEDVVVLGRFFLQKYAREFSSKARGFTPSATVSMRKYGWPGNIR 532 Query: 406 ELEHAIHRAVVLARATRSG-DEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQ 464 ELE+ + +AVVLA G D++ L+ ++ E +P L +A E FQ Sbjct: 533 ELENRLKKAVVLADKPLLGPDDLDLKPENL---EPIMP-------------LLQAKEEFQ 576 Query: 465 RETIRQALAQNHHNWAACARMLETDVANLHRLAKRL 500 + I + LA+N+ N A+ L D + R ++L Sbjct: 577 KRYINEVLARNNGNRTKTAKDLGVDPRTIFRHLEKL 612 >UniRef50_B5ZJF6 Transcriptional regulator, NifA, Fis Family n=4 Tax=Gluconacetobacter diazotrophicus RepID=B5ZJF6_GLUDA Length = 581 Score = 270 bits (691), Expect = 8e-71, Method: Compositional matrix adjust. Identities = 153/313 (48%), Positives = 202/313 (64%), Gaps = 9/313 (2%) Query: 114 VGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAA--GALSNALLIEQLESQNM 171 +G+P+ + L+G + LD + V ++ L++ +A G + + Q + +N+ Sbjct: 135 IGVPILSRDRLVGVMLLDRPAIPEESVVGSMDVCLLSMVAGLMGQMVRLHRLVQRDRENL 194 Query: 172 L--PGDATPFEAVKQ----TQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVA 225 L G A P V ++G SP + + +++EIVA SD+ VL+ GE+GTGKEL A Sbjct: 195 LHDSGLAQPAAPVADGGGYMGIVGDSPALRAVLQKVEIVARSDVTVLLRGESGTGKELFA 254 Query: 226 KAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFL 285 +AIH+ASPR P V LNCAALPESV ESELFGH KGAFTGAI R G+FE+AD GTLF+ Sbjct: 255 QAIHQASPRHRKPFVKLNCAALPESVLESELFGHEKGAFTGAIGQRKGRFELADGGTLFM 314 Query: 286 DEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLF 345 DEIGE+S + QAKLLRVLQ G+ +RVG R L+VDVRV+ ATNR+L E V GRFRADL+ Sbjct: 315 DEIGEISPSFQAKLLRVLQEGEFERVGGTRTLKVDVRVVTATNRNLEEAVSKGRFRADLY 374 Query: 346 HRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVR 405 +RLSV P+ +PPLR+R D+ +LA F + S + S G L Y FPGNVR Sbjct: 375 YRLSVIPIFLPPLRDRPTDIPMLANEFLRRFNETNRTSLTIASDGMDVLTTCY-FPGNVR 433 Query: 406 ELEHAIHRAVVLA 418 ELE+ I R LA Sbjct: 434 ELENCIRRTATLA 446 >UniRef50_C1ZA32 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains n=10 Tax=Bacteria RepID=C1ZA32_PLALI Length = 551 Score = 270 bits (690), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 131/237 (55%), Positives = 176/237 (74%) Query: 186 QMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCA 245 ++IG SP + + ++I++VA +D +VLI GE+GTGKELVA+ IH S R+ PL+ +NCA Sbjct: 221 ELIGQSPALGTVSQQIDLVAPTDSSVLILGESGTGKELVAREIHRRSRRSNRPLIKVNCA 280 Query: 246 ALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQY 305 A+P + ESE FGH KGAFTGA+ +R G+FE+AD GTLFLDE+GE+ L LQAKLLRVLQ Sbjct: 281 AVPRELYESEFFGHAKGAFTGALRDRVGRFELADGGTLFLDEVGEIPLELQAKLLRVLQE 340 Query: 306 GDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDV 365 G+++RVG++R +V+VR++AATNRDLR E AGRFR DL++RLSVFP+ VPPLR R +DV Sbjct: 341 GELERVGEERTRKVNVRIIAATNRDLRMEAEAGRFRQDLYYRLSVFPVEVPPLRRRKEDV 400 Query: 366 ILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATR 422 LLA +F + G + +L+ LQ Y +PGNVREL+H I RAV+ + R Sbjct: 401 PLLASHFLRIAARKVGRPQPLLTLAIVQKLQQYDWPGNVRELQHVIERAVITSTNER 457 >UniRef50_A0LFR7 Transcriptional regulator, NifA subfamily, Fis Family n=7 Tax=Deltaproteobacteria RepID=A0LFR7_SYNFM Length = 508 Score = 270 bits (689), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 168/383 (43%), Positives = 234/383 (61%), Gaps = 28/383 (7%) Query: 113 CVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQN-- 170 CV P+F +G L+ D + D+ D+E+ +++A+A L + +E +N Sbjct: 122 CV--PIFYQGRSVGVLSADKLARRVEDL--DKEVEILSAVAE-LLGKVVHFRAVEEENSR 176 Query: 171 ---MLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKA 227 ML P T +IG S + ++ + I+ VA ++ VLISGETGTGKELVA+A Sbjct: 177 LRRMLAEARRP-----TTNIIGRSKVIQEVLRAIDQVADTNTTVLISGETGTGKELVARA 231 Query: 228 IHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDE 287 IH+ S RA PLV +NCAA+P+++ ESELFGH KGAFTGA++ R G+FE A GT+FLDE Sbjct: 232 IHDNSRRAKGPLVQVNCAAMPDTLLESELFGHEKGAFTGAVTRRRGRFEEAQGGTIFLDE 291 Query: 288 IGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHR 347 +GELS QAKLLRVLQ + Q +G R ++VDVRV+ A+N+DL +EV G FR+DL++R Sbjct: 292 VGELSPIAQAKLLRVLQEREFQPLGSSRTVKVDVRVITASNKDLEKEVALGTFRSDLYYR 351 Query: 348 LSVFPLSVPPLRERGDDVILLAGYFCEQC--RLRQGLSRVVLSAGARNLLQHYSFPGNVR 405 L+VFP+ +PPLRERG D++LLA YF + L + + R+ S A ++L Y +PGNVR Sbjct: 352 LNVFPIFLPPLRERGPDILLLADYFVLKYARELDKDVKRITTS--AIDMLMCYHWPGNVR 409 Query: 406 ELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQR 465 ELE+ I RAV+LA G+ V + P TL V V + L AF+R Sbjct: 410 ELENCIERAVLLA----GGNAV----DSWHLPP-TLQMKPVGMQNVSRGKLEALVSAFER 460 Query: 466 ETIRQALAQNHHNWAACARMLET 488 + I AL N + AR+L T Sbjct: 461 DLITDALKDVRGNQSQAARLLGT 483 >UniRef50_C0QE85 FhlA n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QE85_DESAH Length = 492 Score = 269 bits (688), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 171/493 (34%), Positives = 277/493 (56%), Gaps = 34/493 (6%) Query: 28 LITTLRQVLECDASALLRYDSR---QFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGD 84 ++T +R+++E + + +L + R + + A K + G F+LE + AI + G Sbjct: 17 VLTAIRELIEYELAVVLSCEGRSRLRVLKAAGPAATKILEGYTFSLEDRKDIAAIVQEGK 76 Query: 85 VVRFPADSELPDPYDGLI--PGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFS 142 F D Y G++ P H+C+ PL+ L G LTLD ++F + Sbjct: 77 PYLFDEAEPHVDTYAGVVDFPAD-----HSCMVTPLYLDDTLQGVLTLDHHSCNRF---T 128 Query: 143 DEELRLIAALA---AGALSNALLIEQLESQNMLPGDATPF----EAVKQTQMIGLSPGMT 195 + +RL+ L+ + A++ + E LE +++ F A +++IG S Sbjct: 129 PQNVRLVGTLSKLISLAIAQSNDKEALEKEHLAILQERNFLLERNAGALSELIGNSVSWN 188 Query: 196 QLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESE 255 ++K +VAAS VLI GETGTGKE+VA+A+H S R P + +NC+A+ VAESE Sbjct: 189 RVKDAAAMVAASQTPVLIQGETGTGKEVVARAVHRLSDRKGGPFIPVNCSAISAGVAESE 248 Query: 256 LFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDR 315 LFGH KG FTGA+S+R G+FE+AD GTLFLDEIG+L L +Q KLLR LQ ++R+G + Sbjct: 249 LFGHEKGGFTGAVSSRKGRFELADGGTLFLDEIGDLPLEIQPKLLRALQEKKLERIGGES 308 Query: 316 CLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQ 375 + VDVR++AA++ DL V RFR DL++RL+VFP+ +PPLRERG D+++LA YF Q Sbjct: 309 TISVDVRIIAASHVDLYTAVRENRFREDLYYRLNVFPIRLPPLRERGSDILILAEYFTGQ 368 Query: 376 CRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFA 435 R R G + L+ + ++L +PGNVR+L++ + RA +L+R ++ A+H Sbjct: 369 IRARAGHKDLALAPESVDILLQADWPGNVRQLQNTLERAAILSRGG------VIRAEHIV 422 Query: 436 FPEV-----TLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDV 490 E LP ++ A +++ ++ +A+ ++ + + + + A A +L+ Sbjct: 423 ADETPEDSFCLPGADLDATALLRFDV--MVKAYLQKVLTRTGGKVYGKGGA-AEILDLKP 479 Query: 491 ANLHRLAKRLGLK 503 LH K+ G++ Sbjct: 480 TTLHSKLKKYGIR 492 >UniRef50_Q2LXW8 Nif-specific regulatory protein with sigma 54 interaction domain n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LXW8_SYNAS Length = 513 Score = 269 bits (687), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 165/390 (42%), Positives = 234/390 (60%), Gaps = 14/390 (3%) Query: 113 CVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNML 172 CV P+ ++G L+ D D+ D EL ++++++ ++ ++ I LE +N Sbjct: 121 CV--PIIYDNRVVGVLSADKAARQVEDL--DRELAMLSSISE-LIAKSVHIRALEEENRR 175 Query: 173 PGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEAS 232 V +++IG S M ++ I VA S+ VLI+GETGTGKELVA+AIH+ S Sbjct: 176 LRHMLGRSTVPDSEIIGHSRVMQEVFGLIAQVADSNTTVLINGETGTGKELVARAIHDRS 235 Query: 233 PRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELS 292 R PL+ +NCAA+P+++ ESELFGH KGAFTGA+ R G+FE A GT+FLDE+GELS Sbjct: 236 SRCKGPLIQVNCAAMPDTLIESELFGHEKGAFTGALHARRGRFEEAHGGTIFLDEVGELS 295 Query: 293 LALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFP 352 A QAKLLRV+Q Q +G R + VDVR++AATNR+L E+V G FRADL++RL+VFP Sbjct: 296 AAAQAKLLRVIQEKKFQPLGASRVVSVDVRIIAATNRNLEEDVAVGHFRADLYYRLNVFP 355 Query: 353 LSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIH 412 + +PPLRERG D+ILLA YF + G S +S +S+PGNVRELE+ I Sbjct: 356 IYLPPLRERGSDIILLADYFVLKYNKIMGKSVKRISNAVLEAFLSHSWPGNVRELENCIE 415 Query: 413 RAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQAL 472 RAV+LA +GD + E H P + + + E K N E+ +R I AL Sbjct: 416 RAVLLA----TGDSI--ETLHLP-PSLQIRSREGEKKESGKFN--AMIESQERAMIVDAL 466 Query: 473 AQNHHNWAACARMLETDVANLHRLAKRLGL 502 ++H N + AR+L T + ++ G+ Sbjct: 467 KESHGNQSQAARILGTTKRIIQYKIQKFGI 496 >UniRef50_D1CFK1 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Bacteria RepID=D1CFK1_THET1 Length = 466 Score = 268 bits (686), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 145/314 (46%), Positives = 203/314 (64%), Gaps = 7/314 (2%) Query: 183 KQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYL 242 K +++IG SP M ++ K I +VAASD VLI+GETGTGKELVA+ IH S + PLV + Sbjct: 142 KTSRIIGNSPVMQEVYKTIGLVAASDATVLITGETGTGKELVAETIHYNSTFSQGPLVKV 201 Query: 243 NCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRV 302 NCAALPE++ ESELFGH KG+FTGA R G+FE+A GT+FLDEIGE++L Q KLLRV Sbjct: 202 NCAALPETLLESELFGHEKGSFTGADRQRKGRFELAHKGTIFLDEIGEMTLGTQRKLLRV 261 Query: 303 LQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERG 362 LQ + +RVG ++VD RV+AATN+ L EEV AG+FR DLF+RL+V + +PPLRER Sbjct: 262 LQEREFERVGGSSTIKVDTRVIAATNKKLEEEVAAGKFREDLFYRLNVIHIHLPPLRERK 321 Query: 363 DDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATR 422 +D+ LL YF ++ R + +S A +L + +PGNVRELE+ I RAV+LA+ Sbjct: 322 EDIPLLVDYFLQKHRYHKDGPPASISEEAIKVLMEHDWPGNVRELENTIERAVILAQGG- 380 Query: 423 SGDEVILEAQHFAFPEV-TLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAA 481 ++ H F ++ T +++ V ++L EA + + I +AL + + A Sbjct: 381 -----VITTHHLVFSQIRTGRNIDLSEVIDKTRSLDEAMRIIESKIILEALEKAKGDHAL 435 Query: 482 CARMLETDVANLHR 495 A +L+ + L R Sbjct: 436 AAEILDISESELKR 449 >UniRef50_A8IQ96 Transcriptional regulator n=18 Tax=Proteobacteria RepID=A8IQ96_AZOC5 Length = 694 Score = 266 bits (681), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 133/266 (50%), Positives = 186/266 (69%), Gaps = 12/266 (4%) Query: 157 LSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGE 216 + NA L E++ ++ G +IG S + ++ +++++VA +D VLI+GE Sbjct: 357 MENAYLQEEIRAETSHRG------------IIGRSEAIKKVLRQVDLVAPTDATVLITGE 404 Query: 217 TGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFE 276 +GTGKEL+A+AIH+AS R PL+ +NCAA+P + ESE FGHV+GAFTGA+ +R G+FE Sbjct: 405 SGTGKELIARAIHDASERRERPLIRVNCAAIPRELFESEFFGHVRGAFTGALRDRVGRFE 464 Query: 277 MADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVL 336 +AD GTLFLDE+GE+ L LQ+KLLRVLQ G +R+G++R +VDVR++AATNRDL+ V Sbjct: 465 LADRGTLFLDEVGEIPLELQSKLLRVLQEGQFERIGEERTRQVDVRIIAATNRDLKAAVR 524 Query: 337 AGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQ 396 AGRFR DLF+RL V P+ PLRER +D+ LLA +F + R + + LSAG LQ Sbjct: 525 AGRFREDLFYRLDVMPIESVPLRERREDIPLLAAHFLDGVRRKPADGPLQLSAGDMRRLQ 584 Query: 397 HYSFPGNVRELEHAIHRAVVLARATR 422 Y +PGNVREL++ I R ++LAR R Sbjct: 585 TYDWPGNVRELQNVIERGIILARNGR 610 >UniRef50_B5JMU1 Sigma-54 interaction domain family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JMU1_9BACT Length = 539 Score = 266 bits (681), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 168/389 (43%), Positives = 231/389 (59%), Gaps = 20/389 (5%) Query: 106 ESLKVHACVGL---PLFAGQNLIGALTLDGMQPDQFDVFSDEE-LRLIAALAAGAL---- 157 ESL++ VG+ PL + IG L+++ + F SD L +IA++ A A Sbjct: 140 ESLRLADGVGMVSVPLKFDEEAIGTLSIERANTN-FGWESDLRILGMIASIVAQAARVRR 198 Query: 158 SNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGET 217 A I+ L ++N + + +IG S M + IE VA S VLI GE+ Sbjct: 199 DAAEQIQSLRAENERLQEEIA-HGFRPENIIGSSSTMRSVYYHIEQVANSATTVLIRGES 257 Query: 218 GTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEM 277 GTGKELVAKA+HE S R P V NCAALP+S+ ESELFGH KGAFTGA++ R G+FE Sbjct: 258 GTGKELVAKALHEKSSRRNKPFVKFNCAALPDSIIESELFGHEKGAFTGALAMRKGRFES 317 Query: 278 ADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLA 337 A+ GT+FLDEIG++SL+ Q KLLRVLQ + +RVG RVDVRV+AAT+R+L E + A Sbjct: 318 ANGGTIFLDEIGDISLSTQVKLLRVLQEREFERVGSQETRRVDVRVIAATSRNLEEMMEA 377 Query: 338 GRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQH 397 G FR DL++RL+VFP+ +PPLRER D+++LA +F E+ R G + +S+ A ++L Sbjct: 378 GTFREDLYYRLNVFPIYMPPLRERKCDILMLADHFIEKFAKRMGRKPIRISSAAIDMLVS 437 Query: 398 YSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLR 457 Y + GNVRELE+ I RAV+LA+ ++A H P + V L Sbjct: 438 YHWAGNVRELENCIERAVLLAKGQS------IKAHH--LPPTLQKKSRAESSEVA--TLE 487 Query: 458 EATEAFQRETIRQALAQNHHNWAACARML 486 +A +A +RE I AL + N A +R L Sbjct: 488 DAIQALEREMIVDALKETGSNLAEASRRL 516 >UniRef50_P03027 Nif-specific regulatory protein n=14 Tax=Proteobacteria RepID=NIFA_KLEPN Length = 524 Score = 265 bits (678), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 136/257 (52%), Positives = 176/257 (68%), Gaps = 1/257 (0%) Query: 173 PGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEAS 232 P TP M+G SP M Q+ I V+ D VL+ GE+GTGKEL+A AIH S Sbjct: 198 PRACTPSRGFGLENMVGKSPAMRQIMDIIRQVSRWDTTVLVRGESGTGKELIANAIHHNS 257 Query: 233 PRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELS 292 PRA V NCAALP+++ ESELFGH KGAFTGA+ R G+FE+AD GTLFLDEIGE S Sbjct: 258 PRAAAAFVKFNCAALPDNLLESELFGHEKGAFTGAVRQRKGRFELADGGTLFLDEIGESS 317 Query: 293 LALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFP 352 + QAKLLR+LQ G+++RVG D LRV+VR++AATNR L EEV G FR DL++RL+V P Sbjct: 318 ASFQAKLLRILQEGEMERVGGDETLRVNVRIIAATNRHLEEEVRLGHFREDLYYRLNVMP 377 Query: 353 LSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIH 412 +++PPLRER +D+ LA + + QG + + +S GA LL YS+PGNVRELE+ + Sbjct: 378 IALPPLRERQEDIAELAHFLVRKIAHSQGRT-LRISDGAIRLLMEYSWPGNVRELENCLE 436 Query: 413 RAVVLARATRSGDEVIL 429 R+ VL+ + +VIL Sbjct: 437 RSAVLSESGLIDRDVIL 453 >UniRef50_A0LJL7 Two component, sigma54 specific, transcriptional regulator, Fis family n=21 Tax=Bacteria RepID=A0LJL7_SYNFM Length = 476 Score = 265 bits (676), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 162/407 (39%), Positives = 239/407 (58%), Gaps = 15/407 (3%) Query: 99 DGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALS 158 DGL +E K HA + + + +G I + + FD F ++ L L L + + Sbjct: 60 DGLAVLEEIKKSHAHLPVIIISGHGNI-ETAVKATRMGAFD-FVEKPLSLERILVS--IK 115 Query: 159 NALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETG 218 NAL +LE +N+L +A + + M G S + L+++I A ++ VLI+GE G Sbjct: 116 NALDFHRLEEENLLWRQ----KAHRTSHMTGRSEAVESLREQIRRAAPTNATVLITGENG 171 Query: 219 TGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMA 278 TGKEL A+ IH+ S R+ P+V +NCAA+PE + ESELFGH KGAFTGA R G+F++A Sbjct: 172 TGKELAARMIHQLSKRSHRPMVEVNCAAIPEDLIESELFGHEKGAFTGAHERRRGRFDVA 231 Query: 279 DNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAG 338 + GTLFLDEIG++SL QAK+LR+LQ +RVG R ++VDVRV+AATN+D++ E+ AG Sbjct: 232 NGGTLFLDEIGDMSLRTQAKILRILQEQVFERVGGSRTIQVDVRVVAATNKDIQREIEAG 291 Query: 339 RFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHY 398 RFR DL++RL+V P+ VPPLR+R D+ LL F + + R + LQ Y Sbjct: 292 RFRQDLYYRLNVIPIFVPPLRDRLQDIPLLVEDFLDDMAAESAMGRKEIDPAVFGPLQQY 351 Query: 399 SFPGNVRELEHAIHRAVVLARATRSGD-EVILEAQHFAFPEVTLPTPEVAAVPVVKQNLR 457 S+PGN+REL + I R V++ R G ++ L+ + LP P A P LR Sbjct: 352 SWPGNIRELRNFIERMVIMTPGQRIGPRDLPLDFLN------RLPKPPEEAGPYQCATLR 405 Query: 458 EATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLKD 504 EA F+R + + L + N + A + + ++LHR K LG+++ Sbjct: 406 EARSVFERAYLLRKLDEFAWNVSLTAAQVGLERSHLHRKMKALGIRE 452 >UniRef50_A9AYA4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AYA4_HERA2 Length = 457 Score = 265 bits (676), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 165/424 (38%), Positives = 237/424 (55%), Gaps = 41/424 (9%) Query: 97 PYDGLI-----PGQ------ESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDV----F 141 PYD LI PGQ E L+ + + + + + +Q +D F Sbjct: 52 PYDLLIMDVRMPGQDGLTILEQLRKNGITTPVIMMTAHGTSSTAIRAIQIGAYDYVIKPF 111 Query: 142 SDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEI 201 EE+ L+ A + +LE+++ P D +MIG SP M ++ K+I Sbjct: 112 DVEEVTLVVKRLFDHQQLASKVRELEAKSFDPRD----------KMIGNSPAMQEIYKQI 161 Query: 202 EIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVK 261 VA +D VLI+GETGTGKE++A IH S R P+V +NCAALPES+ ESELFGH K Sbjct: 162 GRVAHTDATVLITGETGTGKEVLANLIHVNSARRNGPMVKVNCAALPESLLESELFGHEK 221 Query: 262 GAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDV 321 GAFTGA++ R G+FE+A G++FLDEIGE++LA Q KLLR+LQ + +RVG +RVDV Sbjct: 222 GAFTGAVAQRKGRFELAHKGSIFLDEIGEMTLATQKKLLRILQEREFERVGGTTTVRVDV 281 Query: 322 RVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQG 381 RV+AATNRDL +V AG FR DL++RL+V L +P LR+R D+ LLA +F ++ R Sbjct: 282 RVIAATNRDLEADVRAGTFREDLYYRLNVITLHLPALRQRIGDIPLLAEFFLDKYRYAPS 341 Query: 382 LSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTL 441 +S A L +Y +PGNVR+LEH I RAV+L+R ++ ++H + + Sbjct: 342 SPPARISEEAMERLNNYDWPGNVRQLEHEIERAVILSRGN------VITSEHMSL----V 391 Query: 442 PTP------EVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHR 495 P+ ++AA K L E +R +++AL Q+ + AR L A + Sbjct: 392 PSSRSALQVDIAARLREKSTLEELLADVERLALQEALVQHDDDLKVAARSLGLSEAEFQK 451 Query: 496 LAKR 499 K+ Sbjct: 452 RQKK 455 >UniRef50_C6HY50 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HY50_9BACT Length = 477 Score = 264 bits (675), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 144/316 (45%), Positives = 199/316 (62%), Gaps = 8/316 (2%) Query: 186 QMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCA 245 ++IG S M +L + +VA S VLI GE+GTGKEL+A AIHE SPR P + +NCA Sbjct: 167 KIIGQSEKMRELFDLLPVVAQSKSTVLIEGESGTGKELIAHAIHENSPRKDGPFIKVNCA 226 Query: 246 ALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQY 305 AL E V ESELFGHV+GAFTGA+S++ G+FE+A GTLFLDEIGE+S ++Q KLLRVLQ Sbjct: 227 ALSEGVLESELFGHVRGAFTGAVSSKPGRFELASGGTLFLDEIGEISASMQVKLLRVLQE 286 Query: 306 GDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDV 365 + +RVG + L+VDVRV+AATNRDL+ + AG FR DL++RL V PL +PPLRER +D+ Sbjct: 287 EEFERVGGTKTLKVDVRVIAATNRDLKAAIDAGTFRRDLYYRLRVVPLFLPPLRERREDI 346 Query: 366 ILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGD 425 LL F + G + V LS A+N+L ++S+PGN+REL++ I AV+L+ G Sbjct: 347 PLLISSFLSRYNAEFGKNVVGLSQEAQNILMNHSYPGNIRELQNIIEHAVLLSTGRTIGV 406 Query: 426 EVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARM 485 P P PE ++ V + A + IR+A+ + N + A++ Sbjct: 407 R--------ELPRDLAPIPEESSFADVALSRSNALRTMEDVMIRKAVEKTQGNMSQAAKL 458 Query: 486 LETDVANLHRLAKRLG 501 L + L R + +G Sbjct: 459 LGIGRSTLWRKLREMG 474 >UniRef50_Q73KY8 Sigma-54 dependent transcriptional regulator, putative n=1 Tax=Treponema denticola RepID=Q73KY8_TREDE Length = 505 Score = 264 bits (674), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 176/491 (35%), Positives = 266/491 (54%), Gaps = 30/491 (6%) Query: 25 FQRLITTLRQVLECDASALLRYD---SRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIAR 81 ++++ + V+E DA++LL + R +AI K + ++ L+ L+ IA Sbjct: 33 LEKIVESAMDVVEGDAASLLMLEPDGERLRFEIAIG--PKGIEAKKMVLD----LDGIA- 85 Query: 82 AGDVVRFP----ADSELPDP-YDGLIPGQESLKVHACVGLPLFAGQNLIGAL-TLDGMQP 135 G V+++ + L DP +D + K + +P+ IG + L+ + Sbjct: 86 -GWVIKYNRSAIINDVLSDPRFDPTVQKVTGYKNRNMIAVPMRIKDECIGVIEVLNKREE 144 Query: 136 DQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMT 195 FD L L A A A NA E+ + + D + T I S M Sbjct: 145 KDFDSDDLNVLELFATQTAIAYQNAKHYEKSREEIICLQDQLEQDRGYHT-FIAKSKVMN 203 Query: 196 QLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESE 255 + + +AASD +VLI GE+G GKEL+A+ +H S R NP + +NCAALPE + ESE Sbjct: 204 EKLELCRNIAASDASVLILGESGVGKELIAEQLHLNSRRVNNPFIRVNCAALPEGLLESE 263 Query: 256 LFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDR 315 LFGHV+GAFT AIS+R G+FE+AD GT+FLDEIG++ L LQ KLLRVLQ +RVG ++ Sbjct: 264 LFGHVRGAFTDAISDRKGRFELADKGTIFLDEIGDIPLTLQTKLLRVLQEMAFERVGSNK 323 Query: 316 CLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQ 375 L VD R++AATN+++ E V G+FR+DL++RL+V P+ +PPLR R DD+ LA +F ++ Sbjct: 324 TLTVDTRIIAATNKNIEELVRQGKFRSDLYYRLNVLPIYIPPLRNRKDDIQELAHFFLKK 383 Query: 376 CRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATR-SGDEVILEAQHF 434 + S A L+ YS+PGN+RELE+A+ RA VL + +++L+ + Sbjct: 384 FSKEVKKPFLGFSPDAEKLINAYSWPGNIRELENAVERACVLGKPPYIEEKDLLLKFESS 443 Query: 435 AF-PEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANL 493 +F PEV P+ L+ A F++ I + L ++ N A A L L Sbjct: 444 SFEPEVNYSNPD----------LKSAVNDFKKSFIVKILNEHKWNQTAAAEKLGIQRTYL 493 Query: 494 HRLAKRLGLKD 504 RL K L +K+ Sbjct: 494 SRLIKELEIKE 504 >UniRef50_C9RBQ4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Ammonifex degensii KC4 RepID=C9RBQ4_AMMDK Length = 470 Score = 263 bits (672), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 148/322 (45%), Positives = 197/322 (61%), Gaps = 10/322 (3%) Query: 187 MIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAA 246 +IG SP M ++ K I +A SD+ VLI GE+GTGKELVA+AIH SPR P V ++C A Sbjct: 139 LIGCSPAMQEVYKTIGRIADSDVTVLIQGESGTGKELVAEAIHYNSPRQGKPFVKIDCTA 198 Query: 247 LPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYG 306 +PE++ ESELFGH KGAFTGA + + GKFE+AD GT+FLDEIG++S ALQAKLLR LQ Sbjct: 199 IPENLLESELFGHEKGAFTGAHTRKLGKFELADGGTVFLDEIGDISPALQAKLLRFLQEK 258 Query: 307 DIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVI 366 +RVG RVDVR++AATN+DL E V +G FR DL++RL+V + +PPLRER +D++ Sbjct: 259 AFERVGGTETRRVDVRIIAATNKDLEERVKSGLFREDLYYRLNVVEIKLPPLRERKEDIM 318 Query: 367 LLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARAT----R 422 LL YF + G L+ ++L Y++PGNVREL + RAV++AR Sbjct: 319 LLVDYFVSLSNRKFGKQVTGLTRSVADILLQYNWPGNVRELRNVCERAVLMARGNVITPE 378 Query: 423 SGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAAC 482 S E +L A E P + +P L+E +R I +AL + N A Sbjct: 379 SLPEYLLRAVR-GRTEAWHPAEDRGVLP-----LKEMVAEMERSAILRALEEYRGNKTAV 432 Query: 483 ARMLETDVANLHRLAKRLGLKD 504 AR L L+ K LG+ D Sbjct: 433 ARALGMSRTTLYAKMKELGIAD 454 >UniRef50_Q1IQW5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Acidobacteria RepID=Q1IQW5_ACIBL Length = 461 Score = 262 bits (670), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 147/346 (42%), Positives = 210/346 (60%), Gaps = 14/346 (4%) Query: 157 LSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGE 216 + NAL +++LE++N V + +++ M ++ +I+ VAAS+ V I GE Sbjct: 116 VENALKLKRLETENR-----DLRSRVGKHEIVWKGEAMRRVMAQIDRVAASEARVCIYGE 170 Query: 217 TGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFE 276 TGTGKEL A+ +HE SPR P + LNCAA+P + ESELFGH KG+FTGA GKFE Sbjct: 171 TGTGKELAARTLHEKSPRKAGPFITLNCAAVPAELIESELFGHEKGSFTGAAQRHIGKFE 230 Query: 277 MADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVL 336 A GTLFLDEIG++ LA+QAKLLRVL+ G+++RVG D+ + VDVRV+ AT+R+L + V Sbjct: 231 QAHRGTLFLDEIGDMPLAMQAKLLRVLEEGEVERVGGDKSIPVDVRVIVATHRNLEDLVK 290 Query: 337 AGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQ 396 G+FR DLFHR+ VFPL +PPLR R +D+ +L +F Q L+ G V +A A LQ Sbjct: 291 EGKFRQDLFHRVYVFPLILPPLRTRREDIPVLLEHFAAQVCLQNGWKPVPFTAEAVEALQ 350 Query: 397 HYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNL 456 YS+PGNVRE+ + + R ++LA A EV A PE T + + P L Sbjct: 351 RYSWPGNVREMRNVVERLLLLAVA----GEVDRATVELALPEAQTATSDTGSGP-----L 401 Query: 457 REATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 ++RE I L + H+ A+ L + ++L++ + LG+ Sbjct: 402 SSRVAQYEREVILAELQRQKHHITNTAKALGLERSHLYKKCQALGI 447 >UniRef50_C0GSE0 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GSE0_9DELT Length = 730 Score = 261 bits (668), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 156/339 (46%), Positives = 212/339 (62%), Gaps = 19/339 (5%) Query: 94 LPDPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALA 153 LP P +G + G++ + V PL+ L GA+ + D S E + L+ + A Sbjct: 344 LPLP-EGFVLGEKQVVV------PLYYEDILCGAMLASCSSKCKCDSDSMELISLVLSHA 396 Query: 154 AGALSNALLIEQLESQNMLPG--DATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNV 211 +G + A+L Q E + + G ++ FE MIG M + + I+ VA +D+ V Sbjct: 397 SGTIRRAIL-HQEEIKKLKQGVSESAGFEG-----MIGRDYRMQTIYRLIQDVAPTDVTV 450 Query: 212 LISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNR 271 LI GE+GTGKELVAKAIH S R NP V +NC+A P ++ ESELFGH KGAFTGAI R Sbjct: 451 LIQGESGTGKELVAKAIHARSSRRDNPFVVINCSAYPATLLESELFGHEKGAFTGAIRQR 510 Query: 272 SGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDL 331 G+FE A GT+FLDEI E+ L+ Q KLLRVLQ +R+G ++ + VDVR+LAATN+DL Sbjct: 511 PGRFEQARGGTVFLDEIAEVDLSAQVKLLRVLQTQKFERLGGEKSIEVDVRILAATNKDL 570 Query: 332 REEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGA 391 EEV AGRFR DL++RL V P+++PPLRERG+D LLA +F E+ Q +S+ A Sbjct: 571 LEEVKAGRFREDLYYRLDVVPINLPPLRERGNDTALLARHFLERFAAVQDKRINEISSSA 630 Query: 392 RNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILE 430 L YS+PGNVRELE+ + +AVVL + G+ + LE Sbjct: 631 MRALLDYSWPGNVRELENVMEQAVVLCK----GETIALE 665 >UniRef50_Q39TH4 Transcriptional regulator, NifA subfamily, Fis family n=1 Tax=Geobacter metallireducens GS-15 RepID=Q39TH4_GEOMG Length = 556 Score = 261 bits (667), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 159/363 (43%), Positives = 215/363 (59%), Gaps = 26/363 (7%) Query: 74 PRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGM 133 P + G VV+F +LP I +L++ + V +P+ G ++ G L+L + Sbjct: 117 PWFAKMFHLGKVVQFSHLDDLPAEAATDITALLALRIKSQVSVPISVGGHVFGTLSLATV 176 Query: 134 QPDQFDVFSDE---ELRLIAALAAGALSNALLIEQLESQ------------NMLPGDATP 178 + + + DE LRL+ + A NAL+ +Q E Q L D T Sbjct: 177 R--SYRSWPDELVPRLRLVGEIFA----NALVRKQKELQIRKAFQQIKELNEELAADCTY 230 Query: 179 FEA-----VKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASP 233 +IG S + ++ +I+ +A +D VLI GETGTGKELVA+AIH AS Sbjct: 231 LREEIDLNYDVHHIIGQSLPLKRVLAKIQQIALTDTTVLILGETGTGKELVARAIHAASQ 290 Query: 234 RAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSL 293 R P+V +NCA+LP ++ ESELFGH KGAFT A + G+FE AD TLFLDEIGEL L Sbjct: 291 RRDRPMVKVNCASLPANLIESELFGHEKGAFTSAQVRQIGRFEFADRNTLFLDEIGELPL 350 Query: 294 ALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPL 353 QAKLLRVLQ G+ +R+G R L+VDVR++AATNRDL EEV GRFR DL++RL++FP+ Sbjct: 351 ESQAKLLRVLQEGEFERLGSSRTLKVDVRIVAATNRDLEEEVRKGRFRQDLWYRLNIFPI 410 Query: 354 SVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHR 413 +VPPLRER +D+ LL F + + G S + AG LQ Y +PGNVRELE+ I R Sbjct: 411 TVPPLRERTEDIPLLINLFVNKFGRKLGKSIRRIPAGVMKSLQAYDWPGNVRELENVIER 470 Query: 414 AVV 416 A + Sbjct: 471 AAI 473 >UniRef50_Q01Q08 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01Q08_SOLUE Length = 428 Score = 261 bits (666), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 145/320 (45%), Positives = 195/320 (60%), Gaps = 18/320 (5%) Query: 186 QMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCA 245 +MIG +P + ++ + A SD VL+ GE+GTGKEL+A IH ASP A P V +NCA Sbjct: 120 KMIGATPAWQRAVEQASMAARSDARVLLIGESGTGKELLAAHIHSASPFANGPFVKVNCA 179 Query: 246 ALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQY 305 A+P + E+ELFGH KG+FTGA + R GKFE+AD GT+FLDE+G+L QAKLLRVLQ Sbjct: 180 AIPTELLETELFGHEKGSFTGATNMRRGKFELADGGTIFLDEVGDLHGGSQAKLLRVLQE 239 Query: 306 GDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDV 365 G+ RVG + +RV VRV++ATNRDL+ V A +FR DL++RLSV P+ VP LRER D+ Sbjct: 240 GEFHRVGGEAIIRVSVRVVSATNRDLQAMVAAEKFREDLYYRLSVVPIRVPALRERPHDI 299 Query: 366 ILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLA---RATR 422 LLA YF E+ R R V+ +L+ Y +PGN REL + + R +L R TR Sbjct: 300 RLLAEYFLEEFCSRNNFKRKVMDESVYPMLEAYHWPGNARELRNVVERMAILTPGERLTR 359 Query: 423 SGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAAC 482 V + Q A P K ++EA E+ +RE I +AL ++ N + Sbjct: 360 DAIPVEVRVQREAGP---------------KSTIQEARESAEREHILRALEESSWNVSGA 404 Query: 483 ARMLETDVANLHRLAKRLGL 502 AR L + NLH+ + LGL Sbjct: 405 ARTLGMERTNLHKRIRALGL 424 >UniRef50_C8WE21 Transcriptional regulator, NifA, Fis Family n=4 Tax=Alphaproteobacteria RepID=C8WE21_ZYMMN Length = 568 Score = 260 bits (664), Expect = 9e-68, Method: Compositional matrix adjust. Identities = 149/322 (46%), Positives = 205/322 (63%), Gaps = 16/322 (4%) Query: 112 ACV-GLPLFAGQNLIGALTLDGMQP--DQFDVFSDEELRLIAALAAGALSNALLIEQL-- 166 +CV G+P+ + G L +D P ++ + D + RL++ +AA A L + + Sbjct: 131 SCVIGVPILDRDKVSGILLIDRPTPRNEREALAPDRDARLLSMVAALLGQTARLHQMIRR 190 Query: 167 -------ESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGT 219 +S + P A E + ++IG SP + + ++I ++A +++ VL+ GE+GT Sbjct: 191 EHEFLLRQSSHTAPQQA---EDMPHPRIIGDSPIIRSILEKINLIAKNNVTVLLRGESGT 247 Query: 220 GKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMAD 279 GKEL A+AIH+ASPR P + LNCAALPESV ESELFGH KGAFTGA R G+FE+AD Sbjct: 248 GKELFAQAIHQASPRKGLPFIKLNCAALPESVLESELFGHEKGAFTGAAQMRKGRFELAD 307 Query: 280 NGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGR 339 GTLFLDEIGE+S QAKLLRVLQ G+ +RVG + L+V+VRV+AATN +L E V G Sbjct: 308 GGTLFLDEIGEISPNFQAKLLRVLQEGEFERVGGTKTLKVNVRVIAATNVNLEEAVSRGN 367 Query: 340 FRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYS 399 FRADL++RLSV P+ +PPLRE D+ LLA F L + + + + A ++L H Sbjct: 368 FRADLYYRLSVIPIFLPPLREHPSDIPLLAKEFLRHFNL-ENKTHLTIDQNALDVLSHCY 426 Query: 400 FPGNVRELEHAIHRAVVLARAT 421 FPGN+RELE+ I R LAR T Sbjct: 427 FPGNIRELENCIRRTATLARNT 448 >UniRef50_P40734 Formate hydrogenlyase transcriptional activator n=63 Tax=Enterobacteriaceae RepID=FHLA_SALTY Length = 692 Score = 260 bits (664), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 148/375 (39%), Positives = 223/375 (59%), Gaps = 18/375 (4%) Query: 97 PYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGA 156 PY+ ++ ++ LPL +G+ ++G L L + F + + LR IA A A Sbjct: 284 PYERMLFDTWGNQIQTLCLLPLMSGKTMLGVLKLAQCEEKVFTTANLKLLRQIAERVAIA 343 Query: 157 LSNAL-------LIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDL 209 + NAL L E+L +N+ + + ++IG S M + K++E+VA SD Sbjct: 344 VDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYNVLKQVEMVAQSDS 403 Query: 210 NVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAIS 269 VLI GETGTGKEL+A+AIH S R+ +V +NCAA+P + ES+LFGH +GAFTGA + Sbjct: 404 TVLILGETGTGKELIARAIHNLSGRSGRRMVKMNCAAMPAGLLESDLFGHERGAFTGASA 463 Query: 270 NRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNR 329 R G+FE+AD +LFLDE+G++ L LQ KLLRVLQ + +R+G ++ ++ DVR++AATNR Sbjct: 464 QRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKLIQTDVRLIAATNR 523 Query: 330 DLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSA 389 DL++ V FR DL++RL+VFP+ +PPLRER +D+ LL F + R G + + A Sbjct: 524 DLKKMVADREFRNDLYYRLNVFPIQLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPA 583 Query: 390 GARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAV 449 L +PGNVRELE+ + RAV+L R + P++T TP+ + Sbjct: 584 ETLRTLSSMEWPGNVRELENVVERAVLLTRGN---------VLQLSLPDITAVTPDTS-- 632 Query: 450 PVVKQNLREATEAFQ 464 PV ++ +E + +Q Sbjct: 633 PVATESDKEGEDEYQ 647 >UniRef50_C6W352 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Dyadobacter fermentans DSM 18053 RepID=C6W352_DYAFD Length = 693 Score = 259 bits (663), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 146/309 (47%), Positives = 200/309 (64%), Gaps = 22/309 (7%) Query: 146 LRLIAALAAGALSNAL-------LIEQLESQNMLPGDA--TPFEAVKQTQMIGLSPGMTQ 196 L+ I A + A+SN L L +QLE +N FE +++G M Q Sbjct: 335 LQGICAQISTAVSNVLANEQILRLQKQLEDENHYLKQQLNKDFE-----EIVGGGEAMQQ 389 Query: 197 LKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESEL 256 + + I +VA S+ VL+ GETGTGKEL+AKA+H S R ++ +NCAA+P S+ ESEL Sbjct: 390 VYRLISLVAESNATVLLLGETGTGKELIAKAVHHTSARKDKLMIKVNCAAMPASLIESEL 449 Query: 257 FGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRC 316 FGH +GAFTGA+ R GKFE+A+N TLFLDE+GE+ + Q KLLRVLQ +++RVG Sbjct: 450 FGHERGAFTGAVERRIGKFELANNSTLFLDEVGEMPMETQVKLLRVLQEKEMERVGGKTT 509 Query: 317 LRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQC 376 ++++VR++AATNRDL EV AGRFR+DL++RL+VFP+++PPLR+R +D+ LAG+F + Sbjct: 510 IKLNVRIIAATNRDLEAEVKAGRFRSDLYYRLNVFPINLPPLRDRREDIESLAGFFLAKF 569 Query: 377 RLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAF 436 G V LSA A LQ Y +PGNVRELEH I R+V+LA D +I E F Sbjct: 570 SKSIGKKTVKLSANALRQLQAYLWPGNVRELEHLIERSVILAT-----DPMIRE---FFL 621 Query: 437 PEVTLPTPE 445 P+ T T + Sbjct: 622 PQATGATTD 630 >UniRef50_P19323 Formate hydrogenlyase transcriptional activator n=72 Tax=Enterobacteriaceae RepID=FHLA_ECOLI Length = 692 Score = 259 bits (663), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 148/363 (40%), Positives = 214/363 (58%), Gaps = 16/363 (4%) Query: 97 PYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGA 156 PY+ ++ ++ LPL +G ++G L L + F + LR IA A A Sbjct: 284 PYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIA 343 Query: 157 LSNAL-------LIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDL 209 + NAL L E+L +N+ + + ++IG S M + K++E+VA SD Sbjct: 344 VDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDS 403 Query: 210 NVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAIS 269 VLI GETGTGKEL+A+AIH S R +V +NCAA+P + ES+LFGH +GAFTGA + Sbjct: 404 TVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASA 463 Query: 270 NRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNR 329 R G+FE+AD +LFLDE+G++ L LQ KLLRVLQ + +R+G ++ ++ DVR++AATNR Sbjct: 464 QRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNR 523 Query: 330 DLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSA 389 DL++ V FR+DL++RL+VFP+ +PPLRER +D+ LLA F + R G + + A Sbjct: 524 DLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPA 583 Query: 390 GARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAV 449 L + +PGNVRELE+ I RAV+L R + P++ LP PE Sbjct: 584 ETLRTLSNMEWPGNVRELENVIERAVLLTRGN---------VLQLSLPDIVLPEPETPPA 634 Query: 450 PVV 452 V Sbjct: 635 ATV 637 >UniRef50_A3ERY0 Putative two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Leptospirillum sp. Group II RepID=A3ERY0_9BACT Length = 471 Score = 259 bits (661), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 143/332 (43%), Positives = 211/332 (63%), Gaps = 22/332 (6%) Query: 175 DATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPR 234 ++ PF + + +PGM ++ + ++ ++A+D++VLI+GE+GTGKEL A+AIHE SPR Sbjct: 151 ESNPFPGI-----VTKNPGMKEMLRILQKISATDVSVLITGESGTGKELFARAIHERSPR 205 Query: 235 AVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLA 294 P V +NC A+PES+ ESELFGH KGAFTGA +R+GKFE A +GTLFLDE+ EL + Sbjct: 206 KNGPFVAINCGAIPESLLESELFGHEKGAFTGATESRAGKFEAAHHGTLFLDEVAELQIE 265 Query: 295 LQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLS 354 LQ KLLRVLQ ++RVG ++DVR++AATN+ L E + GRFR DL++RLSV Sbjct: 266 LQVKLLRVLQDKIVERVGSRNGKQLDVRIIAATNQPLNELMARGRFREDLYYRLSVMSFH 325 Query: 355 VPPLRERGDDVILLAGYFCEQCRLRQGLSRVV-LSAGARNLLQHYSFPGNVRELEHAIHR 413 +PPLR+RG+DV+LLA +F E+ R +V+ + ++++ + +PGN+RELE+ I R Sbjct: 326 LPPLRDRGEDVLLLAQHFLEKFRTEYNKPQVIDFNRECLDVIRKHDWPGNIRELENRIQR 385 Query: 414 AVVLARA---TRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQ 470 AV++A TR ++ L+++ E TL NL A E ++ + + Sbjct: 386 AVIIASGKWVTREDLDIGLDSRKHG--ESTL-----------SMNLTGAREEAEKRMLVE 432 Query: 471 ALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 A Q N + ARM+ T +H L K+ GL Sbjct: 433 AFEQARGNISHVARMIGTSRPTVHALIKKHGL 464 >UniRef50_Q2LUG8 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=6 Tax=Bacteria RepID=Q2LUG8_SYNAS Length = 456 Score = 258 bits (659), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 150/345 (43%), Positives = 206/345 (59%), Gaps = 17/345 (4%) Query: 159 NALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETG 218 N +L QL+ Q + DA F + K + ++ VA+S VL+ GE+G Sbjct: 128 NEILRRQLKDQGVTT-DAIIFTSQKMAALTSMAAR----------VASSRATVLLQGESG 176 Query: 219 TGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMA 278 TGKEL+A+ IH+ SPR+ P++ +NC ALPES+ ESELFGH KGAFTGA S R G+FE A Sbjct: 177 TGKELLARLIHQLSPRSTRPIITVNCGALPESLIESELFGHEKGAFTGATSRRIGRFEEA 236 Query: 279 DNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAG 338 D GTLFLDEIGEL++ +Q KLLR LQ + QRVG + +R DVR+++ATNRDL V Sbjct: 237 DGGTLFLDEIGELTMPVQVKLLRFLQEREFQRVGGNTNIRADVRIISATNRDLETMVKEE 296 Query: 339 RFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHY 398 +FR DL++RL+V +S+PPLRER +D+ L +F E+ G +S+ AR+LL Y Sbjct: 297 KFREDLYYRLNVVVMSIPPLRERREDIPALIDHFLERFAAENGKKISGISSEARDLLMKY 356 Query: 399 SFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLRE 458 +PGNVRELE+ I RAVV+AR +E+I + F E TL + LR Sbjct: 357 DYPGNVRELENIIERAVVIAR-----NEIIY-MEDLPFREDTLVATSGGVPEEGEGRLRG 410 Query: 459 ATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 A E +++ I+ A+ + + A ML L K+ GLK Sbjct: 411 AIENLEKQMIQDAMEKAGDHQTRAAEMLGLSERMLRYKLKKYGLK 455 >UniRef50_Q2RXL4 Transcriptional regulator, NifA subfamily, Fis family n=6 Tax=Proteobacteria RepID=Q2RXL4_RHORT Length = 733 Score = 258 bits (659), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 155/367 (42%), Positives = 229/367 (62%), Gaps = 22/367 (5%) Query: 112 ACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNAL-------LIE 164 AC G+PL + +++G LTL + D+F ++ L +A+ A+ NAL L + Sbjct: 300 AC-GIPLLSAGHVLGVLTLASRERDKFTDYNIGLLGEVASRICIAVENALAYGEISRLKD 358 Query: 165 QLESQNMLPGDATPF--EAVKQTQ----MIGLSPGMTQLKKEIEIVAASDLNVLISGETG 218 QL +N + E +++T+ +IG+SP + + +++E+VA SD VLI GETG Sbjct: 359 QLSRENKQLAKERYYLEEEIRRTEDFGDIIGISPAIRGVLEQVELVADSDSTVLILGETG 418 Query: 219 TGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMA 278 TGKEL+A+AIH S R ++ +NCAA+P ++ ES+LFGH KGAFTGAI+ +SG+FE+A Sbjct: 419 TGKELIARAIHMLSQRKKRTMIKVNCAAIPSALLESDLFGHEKGAFTGAIAQKSGRFELA 478 Query: 279 DNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAG 338 D GTLFLDE+G++ + LQ KLLR LQ +I+RVG + + VDVR++AATNRDL V Sbjct: 479 DRGTLFLDEVGDIPIDLQPKLLRALQEREIERVGGHQPIPVDVRMIAATNRDLTGMVEKR 538 Query: 339 RFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHY 398 FR DL++RL+VFP+ +PPLRER +D+ L+A YF + + + SA ++L + Sbjct: 539 LFRGDLYYRLNVFPILIPPLRERREDIPLMADYFMRKTARKMNRAIEAFSAETMDMLLNL 598 Query: 399 SFPGNVRELEHAIHRAVVLARATRSGDEVIL---EAQHFAFPEVTLPTPEVAAVPVVKQN 455 +PGNVREL++ I RAV+L + G + L E +H P LP+ E A +P+ Sbjct: 599 PWPGNVRELQNVIERAVILTK----GPVLHLPATELRHHLAPSAALPS-EDAVIPLRAAV 653 Query: 456 LREATEA 462 L A A Sbjct: 654 LPSAASA 660 >UniRef50_D2TTF4 Two-component system response regulator n=3 Tax=Proteobacteria RepID=D2TTF4_CITRO Length = 441 Score = 258 bits (658), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 150/323 (46%), Positives = 203/323 (62%), Gaps = 18/323 (5%) Query: 178 PFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVN 237 P + Q+ M+G SP M QL EI +VA SD VLI G++GTGKELVA+A+H +S R+ Sbjct: 132 PSVSASQSGMVGKSPAMQQLLSEIAMVAPSDATVLIHGDSGTGKELVARALHASSARSDK 191 Query: 238 PLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQA 297 PLV LNCAAL ES+ ESELFGH KGAFTGA R G+F AD GTLFLDEIG++S +Q Sbjct: 192 PLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPLMQV 251 Query: 298 KLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPP 357 +LLR +Q ++QRVG ++ L VDVR++AAT+RDL +E AGRFR DL++RL+V + P Sbjct: 252 RLLRAIQEREVQRVGSNQTLSVDVRLIAATHRDLAQEASAGRFRQDLYYRLNVVTIETPS 311 Query: 358 LRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVL 417 LR+R +D+ LLA +F ++ R + + A +LL HY++PGN+RELE+AI RAVVL Sbjct: 312 LRQRREDIPLLAEHFLQRFAARNRKAVKGFTPQAMDLLIHYAWPGNIRELENAIERAVVL 371 Query: 418 ARATRSGDEVILEAQHFAFPEVTLP-TPEVAAVPVVKQNLREATEAFQRETIRQALAQNH 476 +G+ + A +P P A P+V+ ++E I AL + Sbjct: 372 L----TGEYISERELPLAIANQAMPLMPAQAIQPLVE---------VEKEVILAALEKTG 418 Query: 477 HNWAACARML----ETDVANLHR 495 N AR L +T +A L R Sbjct: 419 GNKTEAARQLGITRKTLLAKLSR 441 >UniRef50_Q026M7 Transcriptional regulator, NifA subfamily, Fis Family n=4 Tax=Bacteria RepID=Q026M7_SOLUE Length = 706 Score = 258 bits (658), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 148/330 (44%), Positives = 205/330 (62%), Gaps = 11/330 (3%) Query: 96 DPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAG 155 DP D L E LK A +PL + +G L+L ++P F E L L+ A Sbjct: 295 DPTDPLATA-EGLK--AVCHIPLISRNRTVGLLSLARLEPVAFSPRDIEFLSLVGNQVAI 351 Query: 156 ALSNAL-------LIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASD 208 A+ NAL L ++L + + D E + +++G S + + +EIE VA +D Sbjct: 352 AVENALAYHEISALKDRLAQEKIYLEDEIRSE-LNFEEIVGRSQALRTVLQEIETVAPTD 410 Query: 209 LNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAI 268 VLI GETGTGKEL+A+AIH S R+ N V LNCAA+P + ESE+FGH KGAFTGA+ Sbjct: 411 STVLIYGETGTGKELIARAIHNLSSRSRNSFVKLNCAAIPTGLLESEMFGHEKGAFTGAV 470 Query: 269 SNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATN 328 + R G+FE+A +GT+FLDEIGE+ L LQ KLLRVLQ + +R+G R +R D R++AATN Sbjct: 471 AQRIGRFELAHHGTVFLDEIGEIPLELQPKLLRVLQEREFERLGSSRTMRTDARLIAATN 530 Query: 329 RDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLS 388 RDL V FRADLF+RL+VFP+ VP LR+R +D+ LL +F +Q R G + + Sbjct: 531 RDLATMVEDRNFRADLFYRLNVFPVQVPALRDRPEDIPLLVRHFVQQFARRMGKAVDTIP 590 Query: 389 AGARNLLQHYSFPGNVRELEHAIHRAVVLA 418 N+L Y +PGN+REL++ + RAV+L+ Sbjct: 591 TETMNVLVRYHWPGNIRELQNLLERAVILS 620 >UniRef50_A4CKT3 Transcriptional regulator, NifA subfamily, Fis Family protein n=1 Tax=Robiginitalea biformata HTCC2501 RepID=A4CKT3_9FLAO Length = 791 Score = 258 bits (658), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 127/259 (49%), Positives = 182/259 (70%), Gaps = 1/259 (0%) Query: 162 LIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGK 221 L +LE +NM + A +M+ S ++Q+ E+E VAA++ VL+ GE+GTGK Sbjct: 459 LRNRLEQENMYLRNELDL-AFNYQEMVYSSQAISQVLTEVEQVAATNATVLLQGESGTGK 517 Query: 222 ELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNG 281 EL+A+AIH SPR+ P++ +NCAA+P + ESELFGH KGAFTGA+SN+ GKFE+AD G Sbjct: 518 ELLARAIHNISPRSGKPMIKVNCAAIPGELLESELFGHKKGAFTGAVSNKVGKFELADGG 577 Query: 282 TLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFR 341 TLFLDEIGEL L +Q KLLR LQ G+I+ VG ++DVR++AATNR L+EEV G FR Sbjct: 578 TLFLDEIGELPLEMQPKLLRFLQEGEIEVVGGTEVRKLDVRIIAATNRYLKEEVEKGDFR 637 Query: 342 ADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFP 401 DL+ R++VFP+ VPPLRER +D+ +L +F ++ + G + ++ A + L+ Y +P Sbjct: 638 EDLYFRINVFPIEVPPLRERKEDIPILVEHFMDKFNRKYGKNISFVTEEAMSQLKQYEWP 697 Query: 402 GNVRELEHAIHRAVVLARA 420 GN+RELE+ + RA +++R Sbjct: 698 GNIRELENLLERATIVSRG 716 >UniRef50_Q1Q6P9 Similar to Sigma-54 dependent transcriptional regulator n=2 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q6P9_9BACT Length = 512 Score = 258 bits (658), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 141/302 (46%), Positives = 198/302 (65%), Gaps = 7/302 (2%) Query: 187 MIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAA 246 +IG S M + IE V+ +D VLI+GETGTGKELVA+AIH S R LV +NCAA Sbjct: 191 LIGKSYLMQNIYDLIEKVSQTDSTVLITGETGTGKELVARAIHYNSHRKDYNLVAVNCAA 250 Query: 247 LPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYG 306 LPE++ ESELFGHVKG+FTGAI ++ GKFE+AD GT+FLDEIGELS+ Q KLLRVLQ Sbjct: 251 LPETLLESELFGHVKGSFTGAIRDKKGKFELADKGTIFLDEIGELSIPTQVKLLRVLQER 310 Query: 307 DIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVI 366 I+RVGD++ ++VD+R++AATN+D+ E + G FR DLF+RL++ + +P L+ER DD+ Sbjct: 311 YIERVGDEKTIKVDIRIIAATNQDILELIEKGTFRKDLFYRLNIISIRLPSLKERTDDIP 370 Query: 367 LLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDE 426 LL +F E+ +R + +S A L YS+PGN+RELE I +AV+L + + + Sbjct: 371 LLVNHFIEKFNIRFKKNINGISPNALRKLLAYSWPGNIRELEGVIEKAVLLEES-ETIEN 429 Query: 427 VILEAQHFAFPEVTLPTPEVAAVPVVK-QNLREATEAFQRETIRQALAQNHH----NWAA 481 + L H A + LP P A + ++L++ + +RE ++ Q HH + AA Sbjct: 430 IELPTDHSATTNLCLPKPLNAGPDISSYEDLQKRLDMLEREYF-VSVFQKHHGRIGSIAA 488 Query: 482 CA 483 C Sbjct: 489 CT 490 >UniRef50_Q1PYI3 Strongly similar to sigma 54 response regulatory protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYI3_9BACT Length = 448 Score = 257 bits (657), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 139/302 (46%), Positives = 195/302 (64%), Gaps = 10/302 (3%) Query: 185 TQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNC 244 ++++G SP M ++ K IE VA S +VLI GETGTGKELVA AIH S RA P V L+C Sbjct: 142 SELVGGSPQMHRIFKMIEDVAPSTASVLIMGETGTGKELVAHAIHYRSERAGKPFVALHC 201 Query: 245 AALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQ 304 AAL E + ESELFGH KGAFTGAI +R G+FE+AD GTLFLDE+ E+SL +Q KLLRVL+ Sbjct: 202 AALSEGILESELFGHEKGAFTGAIQSRKGRFELADGGTLFLDELAEMSLKVQVKLLRVLE 261 Query: 305 YGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDD 364 G+ +RVG ++ ++VDVR +AATNR+L EEV GRFR DLF+RL+V + +PPLRER DD Sbjct: 262 KGEFERVGGEKTIKVDVRCIAATNRNLEEEVSEGRFREDLFYRLNVINIQMPPLRERKDD 321 Query: 365 VILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSG 424 + +L+ YF + + A L + + GN+REL++ I RA+VL ++ Sbjct: 322 IPILSNYFAVKYAKKYKKEIKGFDPEAIKALLSHHWQGNIRELQNTIERAIVLCKSD--- 378 Query: 425 DEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACAR 484 + H PE +P E +PV+K + + ++E I++ L + + + A+ Sbjct: 379 ---TISVDH--LPESIMPDNEY--IPVIKIPIGTTLKEAEKEIIQRTLQITNGSKQSAAK 431 Query: 485 ML 486 +L Sbjct: 432 IL 433 >UniRef50_C8QWL5 Transcriptional regulator, NifA, Fis Family n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QWL5_9DELT Length = 539 Score = 257 bits (657), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 156/396 (39%), Positives = 237/396 (59%), Gaps = 18/396 (4%) Query: 114 VGLPLFAGQNLIGALTLDGMQPDQFDVFSD-EELRLIAALAAGALSNALLIEQ----LES 168 + +P+ G + IGAL++D + + D L +++ L A + L+ Q LE Sbjct: 144 ICVPIRRGPDTIGALSVDREYREGEEFEQDLRFLTILSGLVAQTVKRVQLVNQEQQRLEQ 203 Query: 169 QN-MLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKA 227 +N L + + E + + ++ S M ++ + I VAAS+ VL+ GE+GTGK +VA+A Sbjct: 204 ENSQLRRELS--EKYRVSSILSNSSRMQEVLEMIHRVAASNATVLLRGESGTGKSMVARA 261 Query: 228 IHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDE 287 +H S RA P + +NC+ALPE++ ESELFGH +GAFTGA R G+FE+A+ GTLFLDE Sbjct: 262 VHHNSKRAAGPFITVNCSALPETLLESELFGHERGAFTGAHETRKGRFELAEGGTLFLDE 321 Query: 288 IGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHR 347 IGELS A+Q KLL V+Q + QRVG R L+ DVR++ ATN+DL + V G FR DL++R Sbjct: 322 IGELSTAVQVKLLSVVQDREFQRVGGSRPLKCDVRLITATNKDLEKAVAEGTFREDLYYR 381 Query: 348 LSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVREL 407 L+VFP+ +PPLRER D++LLA +F E+ + +S A +LL Y +PGNVREL Sbjct: 382 LNVFPIYLPPLRERRTDILLLAEFFLEKFASENDKNIRRISTPAIDLLTQYHWPGNVREL 441 Query: 408 EHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRET 467 ++ + RAV++ DE +++ H TL + + + V + A E+F+RE Sbjct: 442 QNCLERAVLIC------DEDTIKSYHLP---PTLQSSD-SLREVSPSSFTAAVESFEREL 491 Query: 468 IRQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 I AL + N A +LET + ++ K+ ++ Sbjct: 492 IIDALKKTDGNQTRAAALLETSLRIINYKIKKYAIE 527 >UniRef50_C4XRA9 Transcriptional regulatory protein ZraR n=9 Tax=Proteobacteria RepID=C4XRA9_DESMR Length = 462 Score = 257 bits (657), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 135/250 (54%), Positives = 178/250 (71%), Gaps = 7/250 (2%) Query: 169 QNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAI 228 Q + PG P ++IG SP M +L I +VA ++ VL++GE+GTGKELVAKA+ Sbjct: 132 QKLGPGVVGP-------EIIGKSPAMRELFSMIAMVAPTEATVLVTGESGTGKELVAKAL 184 Query: 229 HEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEI 288 H SPRA P+V +NCAAL E++ ESELFGH KGAFTGA R G+F AD G++FLDEI Sbjct: 185 HAGSPRAGGPMVAVNCAALNETLLESELFGHEKGAFTGAERRREGRFMAADKGSIFLDEI 244 Query: 289 GELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRL 348 GE++ ++QAKLLRV+Q +IQRVG DR + VDVR+LAATNRDL++EV AGRFR DL++RL Sbjct: 245 GEIAPSIQAKLLRVIQEREIQRVGGDRPVGVDVRILAATNRDLKKEVEAGRFREDLYYRL 304 Query: 349 SVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELE 408 +V +SVPPLRERG D+ LLA +F + + + A + L +PGNVRELE Sbjct: 305 NVVAISVPPLRERGQDIPLLAQHFLTRFAEKNRKRIKGFTPAAMDHLLRCPWPGNVRELE 364 Query: 409 HAIHRAVVLA 418 +A+ RAV+L+ Sbjct: 365 NAVERAVILS 374 >UniRef50_Q53206 Nif-specific regulatory protein n=5 Tax=Alphaproteobacteria RepID=NIFA_RHISN Length = 594 Score = 257 bits (657), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 147/328 (44%), Positives = 203/328 (61%), Gaps = 27/328 (8%) Query: 114 VGLPLFAGQNLIGALTLDGMQP-----DQFDVFSDEELRLIAALAAGALSNALLIEQLES 168 +G+P+ A Q +G L +D + QF+ EE+R ++ + A + A+ + ES Sbjct: 163 IGVPMKADQETLGTLWIDRAKDGAATRTQFE----EEVRFLS-MVANLAARAVRLNGHES 217 Query: 169 QNMLP-----------GDATPFEAVKQ-----TQMIGLSPGMTQLKKEIEIVAASDLNVL 212 ++ P GD E +Q ++G SP + Q+ + +++VA ++ VL Sbjct: 218 RDSRPIGEEGDRKISGGDKELPEPTRQRPTRIDWIVGESPALRQVVESVKVVAQTNSAVL 277 Query: 213 ISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRS 272 + GE+GTGKE AKAIHE SPR P V LNCAAL V ESELFGH KGAFTGAIS R+ Sbjct: 278 LRGESGTGKEFFAKAIHELSPRRKKPFVKLNCAALSAGVLESELFGHEKGAFTGAISQRA 337 Query: 273 GKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLR 332 G+FE+AD GTL LDEIGE+S A QAKLLRVLQ G+++RVG + L+VDVR++ ATN+DL Sbjct: 338 GRFELADGGTLLLDEIGEISPAFQAKLLRVLQEGELERVGGTKTLKVDVRLICATNKDLE 397 Query: 333 EEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGAR 392 V G FRADL++R++V PL +PPLRER D+ LA F ++ R+ + + A Sbjct: 398 TAVAEGEFRADLYYRINVVPLFLPPLRERNGDIPRLAKVFLDRFN-RENNRNLEFTPAAL 456 Query: 393 NLLQHYSFPGNVRELEHAIHRAVVLARA 420 +L FPGNVRELE+ + R LAR+ Sbjct: 457 EILSRCKFPGNVRELENCVRRTATLARS 484 >UniRef50_Q01QL4 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01QL4_SOLUE Length = 457 Score = 257 bits (656), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 150/329 (45%), Positives = 196/329 (59%), Gaps = 10/329 (3%) Query: 163 IEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKE 222 IE + M A+ A Q+IG S GM QL I +VA VLI+GETGTGKE Sbjct: 113 IEDWRRRQMAKLSASLSGAEWTRQLIGGSRGMRQLHHIIHLVAGRRSTVLITGETGTGKE 172 Query: 223 LVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGT 282 L A+A+H R+ P+V +NC ALPES+ ESELFGHV+GAFTGA NR G+FE A GT Sbjct: 173 LAARALHLGGKRSSGPMVSVNCHALPESLLESELFGHVRGAFTGAFQNRIGRFEQAQGGT 232 Query: 283 LFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRA 342 LFLDEIGEL + LQAKLLRVLQ ++QR+G ++VD+RV+AATN DL + G+FR Sbjct: 233 LFLDEIGELPIDLQAKLLRVLQEREVQRLGSSETIKVDIRVVAATNCDLPRRIEEGKFRE 292 Query: 343 DLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPG 402 DL++RL+V PL +PPLR R +DV +LA +F E+ + + +L+ A LL YS+PG Sbjct: 293 DLYYRLNVVPLEMPPLRRRLEDVPMLAAHFVEKACRAESIPPKMLTREALELLCGYSWPG 352 Query: 403 NVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVT-LPTP----EVAAVPVVKQNLR 457 NVR+LE+ + A+ L S D L F P T P P + A+P + Sbjct: 353 NVRQLENVVEMAIAL-----SEDRRTLTPMDFVLPATTRKPAPAAPGPLIALPADGLDYE 407 Query: 458 EATEAFQRETIRQALAQNHHNWAACARML 486 +R + QAL + N A A ML Sbjct: 408 RTLAVIERSILEQALRRTGGNKKAAADML 436 >UniRef50_C9RIK1 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RIK1_FIBSS Length = 509 Score = 257 bits (656), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 169/431 (39%), Positives = 247/431 (57%), Gaps = 22/431 (5%) Query: 79 IARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQF 138 + G + P+ ++ PD D G+ K CV P+ Q ++GAL+ D PD+ Sbjct: 87 VVETGKPIIIPSVAKDPDFLDRTGRGKTEDKAFLCV--PIIMEQEVVGALSADEHNPDEA 144 Query: 139 DVFSDEELRLIAALAAGALSNALLIEQLESQN-MLPGD----ATPFEAVKQT-QMIGLSP 192 ++ ++++ L+ +A + L Q +N +L + A +A Q +IG +P Sbjct: 145 NL--NDQIHLLEIIAQMLATAVKLRRQAREENEILKAENERMAMELKARFQPDNIIGKTP 202 Query: 193 GMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVA 252 M Q+ +I+ VA S L LI GE GTGK LVA+AIH S R + P V ++CAALPESV Sbjct: 203 EMQQVYTQIDQVAKSPLPALIVGEVGTGKGLVAEAIHFRSDRNLGPFVRVHCAALPESVL 262 Query: 253 ESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVG 312 + ELFG KGA G ++ G+ E A+ GTLFLDE+ EL+ LQ KLLR+LQ G+++RVG Sbjct: 263 DRELFGSEKGALVGVVNEAPGRVEQAEGGTLFLDEVAELTPNLQIKLLRLLQQGEMERVG 322 Query: 313 DDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYF 372 +V+VRV+ AT ++L++ V G FR DL+++L + P+ VPPLR+R D++LLA YF Sbjct: 323 ARFPKKVNVRVICATTKNLQQMVSDGTFREDLYYQLHIVPIYVPPLRKRRTDIVLLADYF 382 Query: 373 CEQ-CRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEA 431 + CRL G + L+ G +L Y +PGNVRELE+AI RAV+L +E ++ Sbjct: 383 VDHYCRL-VGKNVRRLARGTIEMLMSYPWPGNVRELENAIERAVLLT------EEDVIYP 435 Query: 432 QHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVA 491 HF T+ T E + P V NL+ EA++R+ I AL + AA AR L T Sbjct: 436 HHFP---PTIQTDETSGTP-VSGNLKLMVEAYERDIICDALKSSKGKMAAAARSLSTTPR 491 Query: 492 NLHRLAKRLGL 502 L K+LG+ Sbjct: 492 ILTYKIKQLGI 502 >UniRef50_B4DAQ1 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DAQ1_9BACT Length = 987 Score = 256 bits (654), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 130/262 (49%), Positives = 182/262 (69%), Gaps = 16/262 (6%) Query: 159 NALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETG 218 N L E++ SQ+ +++G SP + Q+ ++++ VA++D VLI GETG Sbjct: 640 NTYLQEEIRSQHNF------------VEIVGNSPSLLQVLRQVDRVASTDSTVLICGETG 687 Query: 219 TGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMA 278 TGKEL+A+AIH+ SPR PLV +NC A+ + ESELFGHVKGAFTGAI+NR G+FE+A Sbjct: 688 TGKELIARAIHDRSPRRERPLVKVNCGAISTGLVESELFGHVKGAFTGAIANREGRFELA 747 Query: 279 DNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAG 338 D GT+FLDE+GEL Q KLLRVLQ + + +G + ++VDVRV+AATNRDL V G Sbjct: 748 DGGTIFLDEVGELPPETQVKLLRVLQEQEFEPIGSTKTVKVDVRVIAATNRDLETMVREG 807 Query: 339 RFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQC--RLRQGLSRVVLSAGARNLLQ 396 +FR+DLF+RL+V PL++PPLR+R +D+ LL +F E+ +L + L ++ AR L Sbjct: 808 KFRSDLFYRLNVVPLTMPPLRQRANDIPLLTMFFLEKFARKLGKSLGQIAEETMAR--LC 865 Query: 397 HYSFPGNVRELEHAIHRAVVLA 418 Y +PGN+REL++ I RAVVL+ Sbjct: 866 QYPWPGNIRELQNVIERAVVLS 887 >UniRef50_Q2LRW3 Response regulator containing sigma 54 interaction domain n=3 Tax=Bacteria RepID=Q2LRW3_SYNAS Length = 457 Score = 256 bits (654), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 147/359 (40%), Positives = 213/359 (59%), Gaps = 29/359 (8%) Query: 156 ALSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISG 215 L +AL + +LE +N+L + ++ G SP + +L + I IVA ++ +LI G Sbjct: 113 TLKHALDLSRLEEENVLLKQKIN----RDYELTGKSPPIIELMEMISIVAPTNAWILIMG 168 Query: 216 ETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKF 275 E GTGKELVA+AIH S RA P+V +NCAA+PE + ESELFGH KGAFTGA + GKF Sbjct: 169 ENGTGKELVARAIHRQSKRADKPMVEVNCAAIPEELIESELFGHEKGAFTGATEKKRGKF 228 Query: 276 EMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEV 335 ++A GT+FLDE+ ++SL QAK+LR+LQ +RVG ++ +++DVRVLAATN+DL +E+ Sbjct: 229 DIAHEGTIFLDEVADMSLKAQAKILRILQEKKFERVGGNKVIQLDVRVLAATNKDLEKEM 288 Query: 336 LAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLL 395 GRFR DLF+RL+V PL VPPLR R +D+ LLA F L++G + A LL Sbjct: 289 EEGRFRQDLFYRLNVIPLKVPPLRSRKEDIPLLAERFLSDFALKEGEPGKTIQDDALALL 348 Query: 396 QHYSFPGNVRELEHAIHRAVVLARAT-----------RSGDEVILEAQHFAFPEVTLPTP 444 +S+PGNVREL++ I R ++ + R G +V + F P L Sbjct: 349 MEHSWPGNVRELKNFIERLAIMTTSNVITVHDIPPLPRDGHKV----EPFREPGFEL--- 401 Query: 445 EVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 + + REA F+++ I + L + N + A + + +NLH+ K GL+ Sbjct: 402 -------LAGSFREAKMDFEKQYISRKLREFDGNISKTAESIGLERSNLHKKIKAYGLE 453 >UniRef50_D0LSM1 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LSM1_HALO1 Length = 557 Score = 256 bits (654), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 156/320 (48%), Positives = 204/320 (63%), Gaps = 9/320 (2%) Query: 110 VHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQL-ES 168 V VG PL +G L + QP S LR++A AA A++ A EQ+ E Sbjct: 152 VQGFVGQPLICRGQRLGVLGVFVRQP--VTQSSTSVLRILAEHAAAAIATARAFEQVDEM 209 Query: 169 QNMLPGDATPFEAV---KQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVA 225 + L + V + +M+G S M ++ EI+ VA + NVLI GE+GTGKELVA Sbjct: 210 RRQLQAENAYLREVVADRDHEMVGESTAMAHVRGEIQAVAPTHANVLILGESGTGKELVA 269 Query: 226 KAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFL 285 +A+H AS RA PL+ +NCA++ +AESE FGH KGAF+GAI +R+G FE A+ GTLFL Sbjct: 270 RAVHRASRRAAGPLIEVNCASVVRELAESEFFGHTKGAFSGAIRDRAGWFEAAEGGTLFL 329 Query: 286 DEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLF 345 DEI EL L LQ KLLRVLQ G RVG+ R DVR++AATNRDL+EEV AGRFR DLF Sbjct: 330 DEIAELPLELQGKLLRVLQEGRYARVGETRTRDADVRIVAATNRDLKEEVAAGRFREDLF 389 Query: 346 HRLSVFPLSVPPLRERGDDVILLAGYFCEQ-CRLRQGLSRVVLSAGARNLLQHYSFPGNV 404 +RL+VFP+ VPPLR+R D+ LAG+ Q CR + + V L LQ +++PGNV Sbjct: 390 YRLNVFPIRVPPLRDRAGDMPALAGHLLAQICRAMK-VPPVTLDNEQLGRLQAHTWPGNV 448 Query: 405 RELEHAIHRAVVLARATRSG 424 REL + + RAV++A A+R G Sbjct: 449 RELRNVLERAVIVA-ASRKG 467 >UniRef50_A6EHC4 Sigma-54-dependent transcriptional regulator n=1 Tax=Pedobacter sp. BAL39 RepID=A6EHC4_9SPHI Length = 550 Score = 256 bits (653), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 123/238 (51%), Positives = 169/238 (71%) Query: 184 QTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLN 243 ++M+G S + Q+ IE VAASD VLI GETGTGKELVA++IH SPR ++ +N Sbjct: 235 HSEMVGQSSAIRQVFDLIEQVAASDSTVLILGETGTGKELVARSIHNLSPRKDKLMIKVN 294 Query: 244 CAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVL 303 CAALP ++ ESELFGH KG+FTGA R GKFE+A NGTLFLDEIGELS +Q KLLR L Sbjct: 295 CAALPANLVESELFGHEKGSFTGASERRIGKFELAHNGTLFLDEIGELSPDIQVKLLRAL 354 Query: 304 QYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGD 363 Q +I+R+G ++ +VR++AATNR+L +EV G FR+DL++RL+VFP+++PPLR R + Sbjct: 355 QEKEIERIGGKGVIKTNVRIIAATNRNLMKEVEEGNFRSDLYYRLNVFPITIPPLRNRKE 414 Query: 364 DVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARAT 421 D+ L+ +F + + G ++ G LQ Y +PGN+RELEH I R+++L+R Sbjct: 415 DIQALSAHFIQHLAKKTGRQVKGMTKGVLKTLQEYPWPGNIRELEHLIERSILLSRGN 472 >UniRef50_A1VFM6 Sigma54 specific transcriptional regulator, Fis family n=3 Tax=Desulfovibrio vulgaris RepID=A1VFM6_DESVV Length = 569 Score = 256 bits (653), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 150/330 (45%), Positives = 205/330 (62%), Gaps = 21/330 (6%) Query: 178 PFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVN 237 P A + ++GLSP M ++ +E +A +D VL++GE+GTGKELVA+A+H A PRA Sbjct: 258 PGGAPGEWGLVGLSPAMQRIYHLLEDLAPTDTTVLVTGESGTGKELVAEALHNAGPRATG 317 Query: 238 PLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQA 297 PL+ +NCAALPE++ ESELFGHV+GAFTGA+ +R G+F++A GT+FLDEIG+LS +Q Sbjct: 318 PLIKVNCAALPETLLESELFGHVRGAFTGALRDRVGRFQLAHGGTIFLDEIGDLSPQVQL 377 Query: 298 KLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPP 357 +LLRVLQ + +RVGD R RVDVRV+AAT+R+LRE V +G FR DL++RL V L +PP Sbjct: 378 RLLRVLQEREFERVGDTRTTRVDVRVIAATHRNLRERVASGLFREDLYYRLRVVELHMPP 437 Query: 358 LRERGDDVILLAGYFCEQCRLRQGLSRVVLS---AGARNLLQHYSFPGNVRELEHAIHRA 414 LRER +D+ LLA +F Q SR V+ A +R L+ H S+PGNVREL HA+ Sbjct: 438 LRERHEDLALLAEHFVGV--FNQQFSRCVMGFTEAASRALMTH-SWPGNVRELRHAVEHG 494 Query: 415 VVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQ 474 +L + R D L P+V E + P R +R+AL + Sbjct: 495 FILCKGERI-DLADLP------PDVQ--GTEASVFP------RAERSGVHEAAVREALKK 539 Query: 475 NHHNWAACARMLETDVANLHRLAKRLGLKD 504 N A AR+L L+R G++D Sbjct: 540 AGGNKARAARLLGVARQTLYRKLAEYGIRD 569 >UniRef50_Q2RVQ1 Transcriptional regulator, NifA, Fis family n=3 Tax=Alphaproteobacteria RepID=Q2RVQ1_RHORT Length = 600 Score = 256 bits (653), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 145/335 (43%), Positives = 209/335 (62%), Gaps = 20/335 (5%) Query: 109 KVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEE----LRLIAALAAGALS------ 158 +V + + +P+ G G+L+++ + D+ F E L ++A L A +S Sbjct: 131 EVQSMICVPIKGGVKPFGSLSIERHR-DRGTRFKFEHDVRFLTMVATLIAQTVSLERRVV 189 Query: 159 ---NALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISG 215 + L+ E+ + LP P + ++G S M ++ ++ +A S VL+ G Sbjct: 190 GDRDRLIEEKARLEKALPKREKPLKGTILENVVGRSSAMMKISAQVRQIAPSRATVLLRG 249 Query: 216 ETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKF 275 E+GTGKEL+A+AIH SPR+ P + +NCAALPE++ ESELFGH KGAFTGA + R G+F Sbjct: 250 ESGTGKELIAQAIHYLSPRSDKPFIKVNCAALPETLLESELFGHEKGAFTGATTERKGRF 309 Query: 276 EMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEV 335 EMA GTLFLDEIGE+++ QAKLLRVLQ G+ +RVG + ++VDVR++AATN+DL + V Sbjct: 310 EMASGGTLFLDEIGEITVHFQAKLLRVLQEGEFERVGGGKTIKVDVRLVAATNKDLEDAV 369 Query: 336 LAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLL 395 G FRADL++R++V P+ +P LRER +DV LLA +F + G S + S GA + Sbjct: 370 TRGEFRADLYYRINVVPIFLPALRERREDVPLLAQFFLTKFNEENGRS-LRFSEGALTAM 428 Query: 396 QHYSFPGNVRELEHAIHRAVVLARATRSGDEVILE 430 +FPGNVRELE+ + RA LA+ DEVI E Sbjct: 429 GGCNFPGNVRELENCVCRAATLAQ-----DEVIQE 458 >UniRef50_C6HYQ1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HYQ1_9BACT Length = 474 Score = 256 bits (653), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 162/398 (40%), Positives = 235/398 (59%), Gaps = 24/398 (6%) Query: 117 PLFAGQNLIGALT----LDGMQPDQFDVFSD----EELRLIAALAAGALSNALLIEQLES 168 P F G L G +T L+ ++ +D+ EELR + A A + A L Q + Sbjct: 82 PAFHGIILSGDITRPRALEAVRLGAYDLLEKTVDPEELRRVVARA---YNRARLSRQTRA 138 Query: 169 QNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAI 228 + PG A+ A ++ +P + +L + + +A +D++VLI+GE+GTGKEL A+A Sbjct: 139 E---PGPASEI-APTAAGIVTKNPRIEELLRMLRKIAVTDVSVLITGESGTGKELFARAC 194 Query: 229 HEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEI 288 H+AS R P V +NC A+PE++ ESELFGH KGAFTGA +R GKFE AD GTLFLDE+ Sbjct: 195 HQASLRKEGPFVAINCGAIPENLMESELFGHEKGAFTGATESRGGKFEAADRGTLFLDEV 254 Query: 289 GELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRL 348 EL L LQ KLLRVLQ ++RVG ++D+R++AATN+ L E + GRFR DL++RL Sbjct: 255 AELPLDLQVKLLRVLQDKVVERVGGRSGKKLDIRIIAATNQPLPEMMAQGRFREDLYYRL 314 Query: 349 SVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVV-LSAGARNLLQHYSFPGNVREL 407 SV +PPLRERG+DV +LA YF ++ R +++V S+ L+ Y +PGN+RE+ Sbjct: 315 SVMSFVLPPLRERGEDVTILARYFFDRFRTEYQKTQLVDFSSECLALIHSYDWPGNIREM 374 Query: 408 EHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPE--VAAVPVVK-QNLREATEAFQ 464 E+ I RAV++A D I A ++ P PE A+ P+ +NL EA E + Sbjct: 375 ENRIRRAVIVA-----VDRFITPADIDITRDLRPPEPERSPASAPLPPGRNLSEAREEAE 429 Query: 465 RETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 + + +A N + AR++ T +H L K+ GL Sbjct: 430 KRMLTEAFQAARGNISQVARIIGTSRPTVHALIKKHGL 467 >UniRef50_Q1DC06 Sigma-54 dependent transcriptional regulator, Fis family n=3 Tax=Proteobacteria RepID=Q1DC06_MYXXD Length = 531 Score = 255 bits (652), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 167/425 (39%), Positives = 231/425 (54%), Gaps = 30/425 (7%) Query: 96 DPYDGLI---PGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAAL 152 DP+DG++ PG H+C+ +PL AG G L+LD + + + + + + + Sbjct: 108 DPFDGVLDLPPG------HSCMVVPLCAGDRCYGVLSLDRAECETYPQPVVDLVEVYGQM 161 Query: 153 AAGALSNA---LLIEQLESQN---------MLPGDATPFEAVKQTQMIGLSPGMTQLKKE 200 A A+ +A E+L Q+ L GD+ E + +T SP M L + Sbjct: 162 LATAIQSAEQRATFERLHRQDHEHAKLLEAQLGGDS---EGILETSK---SPVMRDLARR 215 Query: 201 IEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHV 260 VA +D VLI+GETGTGKE +A+AIH S RA P V LNCAA+P + ESELFGHV Sbjct: 216 ARQVAETDTPVLITGETGTGKERLARAIHRWSARADQPFVTLNCAAIPAGLLESELFGHV 275 Query: 261 KGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVD 320 KGAFTGA +R+G+F+MA GTL LDE+GEL LQAKLLR LQ + VG D+ +R D Sbjct: 276 KGAFTGATKDRAGRFQMAHGGTLLLDEVGELPFDLQAKLLRALQEKTFEPVGSDKTVRAD 335 Query: 321 VRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQ 380 VR+LAAT+ DL++ + RFR DL++RLSVFPL +PPLRER +D+ L + E+ R Sbjct: 336 VRILAATHVDLQQAIAQKRFREDLYYRLSVFPLRLPPLRERREDLPQLCAFLLEEQANRT 395 Query: 381 GLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVT 440 G + ++ L+ Y +PGN+REL +A+ RA +L R T G E A Sbjct: 396 GRRGMRVTPEGLVRLEAYEWPGNLRELANALERATILTRGTELGPESFDVPTRGAAVVAA 455 Query: 441 LPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNH---HNWAACARMLETDVANLHRLA 497 LP A K+ A QRE I + L + A +L + L Sbjct: 456 LPEEPAPAAGGPKRGPVLTLAAVQREHIMRVLTLTRGRVYGANGAAALLGLKPSTLQSRM 515 Query: 498 KRLGL 502 K+LG+ Sbjct: 516 KKLGI 520 >UniRef50_B8DJ70 Sigma54 specific transcriptional regulator, Fis family n=5 Tax=Desulfovibrio RepID=B8DJ70_DESVM Length = 601 Score = 255 bits (652), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 147/328 (44%), Positives = 205/328 (62%), Gaps = 17/328 (5%) Query: 109 KVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEEL------RLIAALAAGALSNALL 162 +HA PL N+IG + + +P + V +D L ++ A + A+ NA Sbjct: 159 SIHAYAAYPLQFKGNMIGVMAVFYDRPMR-GVLADLMLLHRKMHKIFADSLSAAVVNARS 217 Query: 163 IEQLE--------SQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLIS 214 E+++ L G+ A ++G SP + + +++++VA +D VL+ Sbjct: 218 FEEIQHLRRALELENEHLRGEVR--RARAPHSIVGDSPPLRRALEQVDMVAPTDATVLLL 275 Query: 215 GETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGK 274 GE+GTGKELVA+AIH+ S RA PLV +NC+A+P + ESE FGHVKGAFTGA+ +R G+ Sbjct: 276 GESGTGKELVAQAIHDRSQRAAAPLVRVNCSAIPRELFESEFFGHVKGAFTGALRDRVGR 335 Query: 275 FEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREE 334 F++AD GTLFLDE+GE+ L LQ KLLRVLQ G +RVG++R VDVR++AATNRDLR + Sbjct: 336 FQLADGGTLFLDEVGEIPLELQGKLLRVLQEGVFERVGEERSRSVDVRIIAATNRDLRAD 395 Query: 335 VLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNL 394 V GRFR DLF RLSVFP+++PPLR R DD+ LLA +F R L ++ Sbjct: 396 VEHGRFRQDLFFRLSVFPVALPPLRARRDDIPLLARHFVRASCRRLNLPEPRIAHRQMAE 455 Query: 395 LQHYSFPGNVRELEHAIHRAVVLARATR 422 LQ Y +PGNVREL++ I R V++A R Sbjct: 456 LQSYPWPGNVRELQNVIERGVIMAEGGR 483 >UniRef50_C1ZJW6 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains n=2 Tax=Planctomyces RepID=C1ZJW6_PLALI Length = 662 Score = 255 bits (652), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 143/316 (45%), Positives = 202/316 (63%), Gaps = 8/316 (2%) Query: 187 MIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAA 246 ++G SP + ++ I +A +DL VLI GE+GTGKE+VA ++H RA P + +NCAA Sbjct: 345 IVGESPAIVAMRSTIRRLAGTDLPVLILGESGTGKEVVASSLHYQGSRADRPFIAVNCAA 404 Query: 247 LPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYG 306 L E++ ESELFGH +G+FT A R GKFE+A+ GT+FLDEIG+LS QAKLLRVL+ Sbjct: 405 LTETLLESELFGHERGSFTDAHEMRRGKFELAEGGTIFLDEIGDLSAGGQAKLLRVLEQK 464 Query: 307 DIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVI 366 I RVG + + ++ RV+AATN L E V A +FR DL+ RL+V L +PPLRER DDV+ Sbjct: 465 VITRVGGSQTIPINARVIAATNARLAEAVRAKKFREDLYFRLNVVTLEIPPLRERADDVL 524 Query: 367 LLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDE 426 LA YF EQ ++ ++ LSA AR LQ +++PGNVREL + + R LA A R Sbjct: 525 PLAEYFLEQFAVQARRGKMHLSAEARRRLQSHAWPGNVRELRNLMERVAFLAPAER---- 580 Query: 427 VILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARML 486 +E + AF + P + P + L EAT +FQ+E IR+A+ + +N + AR+L Sbjct: 581 --IEVEDLAF--ILSPERDSFHEPSLDMGLSEATNSFQQEYIRRAIKRVRNNMSEAARLL 636 Query: 487 ETDVANLHRLAKRLGL 502 +NL+R ++L + Sbjct: 637 GLHRSNLYRKMRQLDM 652 >UniRef50_C7PQF6 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PQF6_CHIPD Length = 1082 Score = 255 bits (652), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 140/328 (42%), Positives = 204/328 (62%), Gaps = 19/328 (5%) Query: 110 VHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALA---AGALSNALLIEQL 166 + G+ L IG +T M ++ + F +L L+ ++ A A++N L E++ Sbjct: 675 IKEIAGVKLVNQNEDIGFIT---MLSEERNSFRHRDLHLLKGISDQVAVAVANILADEKI 731 Query: 167 ESQ-NMLPGDATPFEAVK------------QTQMIGLSPGMTQLKKEIEIVAASDLNVLI 213 Q + G E K T +IG P M ++ + V+ + VLI Sbjct: 732 GQQLKEINGYKEKLEEEKLYLQQEISSVYTHTDIIGAGPEMQRVFHMLSQVSFAQSTVLI 791 Query: 214 SGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSG 273 GETGTGKEL+A+AIH SPR +V +NCAALP ++ ESELFGH +G+FTGAI R G Sbjct: 792 LGETGTGKELIARAIHNGSPRKNKLMVKVNCAALPANLIESELFGHERGSFTGAIERRIG 851 Query: 274 KFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLRE 333 KFE+A++GTLFLDEIGE+ L LQ KLLR +Q +I+R+G ++ DVR++AATNR+L++ Sbjct: 852 KFELANHGTLFLDEIGEMPLDLQVKLLRAIQEREIERIGGKSTIKTDVRIIAATNRNLQK 911 Query: 334 EVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARN 393 EV GRFR+DL++RL+VFP+ +PPLR+R +D+ LLA +F E+ G + LS+ A Sbjct: 912 EVAEGRFRSDLYYRLNVFPIVLPPLRDRKEDISLLAAHFIERFARSTGRKNIKLSSTAMK 971 Query: 394 LLQHYSFPGNVRELEHAIHRAVVLARAT 421 L Y++PGNVRELEH + R+++L + Sbjct: 972 QLTAYNWPGNVRELEHVLERSILLTQGN 999 >UniRef50_Q8Z333 Transcriptional regulatory protein zraR n=36 Tax=Proteobacteria RepID=ZRAR_SALTI Length = 441 Score = 255 bits (651), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 162/363 (44%), Positives = 215/363 (59%), Gaps = 30/363 (8%) Query: 149 IAALAAGALSNAL-------LIEQLE---SQNMLPGDATPFEAVKQTQMIGLSPGMTQLK 198 + AL AGAL + L E LE + G P + Q MIG SP M L Sbjct: 93 VEALKAGALDYLIKPLDFDRLQETLEKALAHTRETGAELPSASAAQFGMIGSSPAMQHLL 152 Query: 199 KEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFG 258 EI +VA SD VLI G++GTGKELVA+A+H S R+ PLV LNCAAL ES+ ESELFG Sbjct: 153 NEIAMVAPSDATVLIHGDSGTGKELVARALHACSARSDKPLVTLNCAALNESLLESELFG 212 Query: 259 HVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLR 318 H KGAFTGA R G+F AD GTLFLDEIG++S +Q +LLR +Q ++QRVG ++ + Sbjct: 213 HEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTIS 272 Query: 319 VDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRL 378 VDV ++AAT+RDL EEV AGRFR DL++RL+V + +P LR+R +D+ LLA +F + Sbjct: 273 VDVWLIAATHRDLAEEVSAGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAE 332 Query: 379 RQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPE 438 R + + A +LL HY +PGN+RELE+AI RAVVL L ++ + E Sbjct: 333 RNRKAVKGFTPQAMDLLIHYDWPGNIRELENAIERAVVL-----------LTGEYISERE 381 Query: 439 VTLPTPEVAAVPVVKQNLREATEA--FQRETIRQALAQNHHNWAACARML----ETDVAN 492 + L +AA P+ +N E ++E I AL + N AR L +T +A Sbjct: 382 LPLA---IAATPIKAENSAEIQPLVDVEKEVILAALEKTGGNKTEAARQLGITRKTLLAK 438 Query: 493 LHR 495 L R Sbjct: 439 LSR 441 >UniRef50_C0QRG3 Transcriptional regulatory protein ZraR n=2 Tax=Aquificales RepID=C0QRG3_PERMH Length = 442 Score = 255 bits (651), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 138/346 (39%), Positives = 211/346 (60%), Gaps = 19/346 (5%) Query: 161 LLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTG 220 ++I+Q + L + +++ T +I SP M Q+ + + +A D VLI+GE+GTG Sbjct: 112 IIIDQALEVSDLKKELNELKSLLSTDIIAESPQMKQVLETAKKIAPFDTTVLITGESGTG 171 Query: 221 KELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADN 280 KE++A IH+ S R P + +NC A+P + ESELFG+ KGAFTGA +++ G E A+ Sbjct: 172 KEMIANFIHKNSLRKERPFIAINCGAIPSELLESELFGYKKGAFTGANTDKKGLIEEAEG 231 Query: 281 GTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRF 340 GTLFLDEIGEL L LQ KLLRVLQ +I+ +G +R ++DVR +AATNRDL++ V G+F Sbjct: 232 GTLFLDEIGELPLDLQVKLLRVLQENEIKPIGSNRPKKIDVRFIAATNRDLKKMVEEGKF 291 Query: 341 RADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSF 400 R DL++R++V P+ +PPLRER +D+I LA YF + R G+ + LS AR L +Y + Sbjct: 292 REDLYYRINVIPIHIPPLRERKEDIIPLAQYFINKFCSRYGIPKKRLSEKAREKLLNYDY 351 Query: 401 PGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNL---R 457 GNVRELE+ I RAV+ T G+E+ +P V+ ++ Q L + Sbjct: 352 KGNVRELENIIERAVL----TTEGEEI-----------TDIPVT-VSKRYILSQELKPFK 395 Query: 458 EATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 EA + F+ ++ L + N + +++ A ++R+ KR G++ Sbjct: 396 EAKKEFEESYLKNLLEKTDFNISKASKIAGITRAQIYRMIKRYGIE 441 >UniRef50_Q1D6H5 Sigma-54 dependent DNA-binding response regulator n=7 Tax=Myxococcales RepID=Q1D6H5_MYXXD Length = 474 Score = 254 bits (650), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 142/330 (43%), Positives = 204/330 (61%), Gaps = 16/330 (4%) Query: 187 MIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAA 246 +IG S + ++ K I+ VA + VLI+GE+GTGKEL+A A+H AS R P + +NCAA Sbjct: 137 IIGDSSTIQEVYKIIDKVADTPSTVLITGESGTGKELIATALHGASSRRDKPFIKINCAA 196 Query: 247 LPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYG 306 +P ++ ESELFG+ +GAFTGA++++ G+FE+AD GTLFLDEIGE+ + +Q KLLR +Q G Sbjct: 197 IPHTLLESELFGYERGAFTGAVTSKPGRFELADEGTLFLDEIGEIPVEMQVKLLRAIQEG 256 Query: 307 DIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVI 366 + +RVG + RVDVR++AATNRDL+ E+ AGRFR DL++RL+V P+S+P LRER DV Sbjct: 257 EFERVGGIKTTRVDVRLVAATNRDLQAEIEAGRFRKDLYYRLAVVPISLPALRERRSDVP 316 Query: 367 LLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLA-------- 418 +LA +F E+ R ++ A LLQ Y++PGN+RELE+ I R ++ A Sbjct: 317 MLARHFVEKYNRRLNKKIEGIADDAMALLQGYAWPGNIRELENLIERVLLFADGPLITAR 376 Query: 419 ---RATRSGDEVILEAQ-HFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQ 474 R G V A A + +PT EV +V+ E +R+ I + L + Sbjct: 377 DLPEPVRQGTGVQAGANLASAVASIDVPTGEVGLKDIVRMKAAE----LERDLIVKKLEE 432 Query: 475 NHHNWAACARMLETDVANLHRLAKRLGLKD 504 N AR+L+ +L K GL+D Sbjct: 433 TGGNVTRAARLLQISRKSLQTKMKEFGLRD 462 >UniRef50_A3EU11 Putative sigma54 specific transcriptional regulator, Fis family n=2 Tax=Leptospirillum sp. Group II RepID=A3EU11_9BACT Length = 463 Score = 254 bits (650), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 138/318 (43%), Positives = 197/318 (61%), Gaps = 12/318 (3%) Query: 182 VKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVY 241 V ++ M+G SP M + + I +A +D VLI+GE+GTGKELVA+AIHE S R+ P + Sbjct: 154 VAESDMVGSSPSMMECFRSIRKIAGTDACVLITGESGTGKELVARAIHERSKRSSGPFIT 213 Query: 242 LNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLR 301 LNC A+P ++ +SELFG+ KGAFTGA S + G E A++GT+ LDEIG++ LQ LLR Sbjct: 214 LNCGAIPSNLIQSELFGYEKGAFTGAHSRKIGHIEAANHGTIMLDEIGDMPFELQVNLLR 273 Query: 302 VLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRER 361 VLQ+G IQRVG + VDVR++AAT+ DL + GRFR DL++RL V +S+PPLR+R Sbjct: 274 VLQFGKIQRVGSSAEIPVDVRIIAATHIDLEKACREGRFREDLYYRLHVLRVSLPPLRDR 333 Query: 362 GDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARAT 421 G D+ LLA YFC++ G + SA A ++Q YS+PGNVREL + I AV+++ Sbjct: 334 GADISLLARYFCKRFSAEYGATSKPFSAEALEVIQAYSWPGNVRELINKIKSAVLMSEGP 393 Query: 422 RSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAA 481 ++E + + P + + LRE E +RET+R+ L + +N + Sbjct: 394 ------LIEPRDLQLENMPHPAKKSG------KTLREIREITERETLRETLQKFENNVSR 441 Query: 482 CARMLETDVANLHRLAKR 499 AR L L+ L K+ Sbjct: 442 TARELGVTRTTLYDLLKK 459 >UniRef50_P54931 Nif-specific regulatory protein n=9 Tax=Alphaproteobacteria RepID=NIFA_RHIEC Length = 584 Score = 254 bits (650), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 139/327 (42%), Positives = 203/327 (62%), Gaps = 24/327 (7%) Query: 114 VGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQ-------- 165 +G+P+ A ++G +++D ++ D +DE++R + + A +S + + + Sbjct: 141 IGVPVKADNKILGTISIDRVRNDAAPFPADEDVRFLT-MVANLVSRTIRLHRFLNLEGRR 199 Query: 166 -----------LESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLIS 214 + +Q PG P VK +IG SP + Q+ + + +VA ++ VL+ Sbjct: 200 PIGEQERPEKPIIAQRGAPGRHPP---VKIDGIIGDSPALQQVVETVSVVARTNSTVLLR 256 Query: 215 GETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGK 274 GE+GTGKE A+AIHE SPR P V LNCAALPE V ESELFGH KGAFTGAI+ R+G+ Sbjct: 257 GESGTGKEFFAQAIHELSPRKNKPFVKLNCAALPEGVLESELFGHEKGAFTGAIAQRAGR 316 Query: 275 FEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREE 334 FE+A+ GTL LDEIGE+S A QAKLLRVLQ G+++RVG + L VDVR++ ATN++L Sbjct: 317 FELANGGTLLLDEIGEISPAFQAKLLRVLQEGELERVGGTKTLAVDVRLICATNKNLEMA 376 Query: 335 VLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNL 394 V FRADL++R+SV P+ +PPLRER D+ LA ++ ++ + S+ A + Sbjct: 377 VANAEFRADLYYRISVVPIVLPPLRERPGDIPRLANALLDRFN-KENQRELTFSSSAIEV 435 Query: 395 LQHYSFPGNVRELEHAIHRAVVLARAT 421 + FPGNVRELE+ + R LAR++ Sbjct: 436 MSQCYFPGNVRELENCVRRTATLARSS 462 >UniRef50_D2QLL9 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QLL9_9SPHI Length = 875 Score = 254 bits (650), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 146/351 (41%), Positives = 213/351 (60%), Gaps = 16/351 (4%) Query: 106 ESLKVHACVGLPLFAGQNLIGALTLDGMQPDQF---DVFSDEELRLIAALAAGALSN--- 159 E+L + + + +P+F+ I AL L F D+ + +++ + ALA LS Sbjct: 472 EALGLKSSMYVPIFSKGKPIAALILASKAAYAFTPKDLCTLQDISVELALALENLSAYER 531 Query: 160 -ALLIEQLESQNMLPGDATPFEAVKQT----QMIGLSPGMTQLKKEIEIVAASDLNVLIS 214 +L E LE + E +K + ++IG S M + I VA +D VLI Sbjct: 532 IKVLSEHLEQEKTYLA-----EEIKTSHNFEEIIGTSSSMQTVFNAIGQVAPTDYTVLIM 586 Query: 215 GETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGK 274 GETGTGKEL+A+A+H S R P+V +NCAALP + ESELFGH +G+FTGA R GK Sbjct: 587 GETGTGKELIARAVHSLSARRDRPVVKINCAALPAQLIESELFGHERGSFTGATEKRIGK 646 Query: 275 FEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREE 334 FE+A+ GTLFLDEIGEL L LQAKLLR +Q +I+RVG + ++ R++AATNR+L++E Sbjct: 647 FELANGGTLFLDEIGELPLELQAKLLRAIQEKEIERVGGKGVILINTRIIAATNRNLQQE 706 Query: 335 VLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNL 394 V AGRFR+DL++RL+VFP+ VPPLRER +D++ L +F ++ + G ++ + Sbjct: 707 VAAGRFRSDLYYRLNVFPIVVPPLRERQEDILPLTMHFLQKISKKLGKPITNIANASLQQ 766 Query: 395 LQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPE 445 L Y +PGN+RELEH + R+ +L+++ L A AFP + + E Sbjct: 767 LLQYPWPGNIRELEHVLERSSILSQSATLTLAEPLRAATTAFPPFVVQSSE 817 >UniRef50_C5BI62 Transcriptional regulator, Fis family n=5 Tax=Gammaproteobacteria RepID=C5BI62_TERTT Length = 642 Score = 254 bits (650), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 122/236 (51%), Positives = 177/236 (75%) Query: 187 MIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAA 246 +IG G+ ++K++IE+VA ++ NVL+ GE+GTGKEL+A+AIH+AS RA P++ +NCAA Sbjct: 321 IIGEGAGIKRIKQQIELVAQTEANVLVYGESGTGKELIAQAIHQASRRADKPMIRVNCAA 380 Query: 247 LPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYG 306 + + ESE FGH+KGAFTGA+ +R G+FE+A+ GTLFLDE+GE+ L LQ+KLLRVLQ G Sbjct: 381 IAHELFESEFFGHIKGAFTGALRDRIGRFELANGGTLFLDEVGEIPLELQSKLLRVLQEG 440 Query: 307 DIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVI 366 ++RVG+++ VDVR++AATNRDL+ E GRFR DL+ RL+VFP+ PLR+R +D+ Sbjct: 441 QLERVGEEKTREVDVRIIAATNRDLKAEADQGRFREDLYFRLNVFPIQAVPLRDRREDIG 500 Query: 367 LLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATR 422 LLA ++ EQ + + L+ L+ Y++PGNVREL++ + RAV+ +RA R Sbjct: 501 LLAAHYLEQLCHKFPRQQCKLTQRDLKQLRDYAWPGNVRELQNVLERAVITSRAGR 556 >UniRef50_B9QYK0 Sigma-54 interaction domain family n=3 Tax=Rhodobacteraceae RepID=B9QYK0_9RHOB Length = 495 Score = 254 bits (649), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 142/327 (43%), Positives = 193/327 (59%), Gaps = 18/327 (5%) Query: 187 MIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAA 246 +G S MT + K IE VA S+ +V I+GE+GTGKE+ A+AIH++SPRA P V LNCAA Sbjct: 140 FVGSSLPMTAVYKMIESVARSNASVFITGESGTGKEVCAEAIHKSSPRAKKPFVPLNCAA 199 Query: 247 LPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYG 306 +P+ + ESE+FGHVKGAFTGA +R G AD GTLFLDEI EL L+LQAKLLR LQ G Sbjct: 200 IPKDLIESEIFGHVKGAFTGATGDRDGAAARADGGTLFLDEICELELSLQAKLLRFLQSG 259 Query: 307 DIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVI 366 +Q+VG D+ +VDVR++ ATNRD +EEV AGRFR DL++RL V P+ +PPLR RG D++ Sbjct: 260 TVQKVGSDKLTKVDVRIVCATNRDPQEEVEAGRFREDLYYRLHVLPIGLPPLRARGADIL 319 Query: 367 LLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVL--------- 417 LA +F + +G + S A LL + +PGNVRE+++ I VVL Sbjct: 320 ELARHFLTKFGSEEGKTFEGFSVEAEELLMRHPWPGNVREMQNTIRNLVVLNEGPIVEVD 379 Query: 418 ---------ARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETI 468 A + V L A P T+ + P + +L + E +R I Sbjct: 380 MLATLQGRQPSAPKPAQTVPLSVPQAASPASTVVSDTGDVWPQITLSLGQPFETLERSII 439 Query: 469 RQALAQNHHNWAACARMLETDVANLHR 495 + + AR+L+ + L+R Sbjct: 440 EATIDACGGSLPKTARVLQVSPSTLYR 466 >UniRef50_P12626 Nitrogen fixation protein anfA n=11 Tax=Bacteria RepID=ANFA_AZOVI Length = 533 Score = 254 bits (648), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 161/379 (42%), Positives = 219/379 (57%), Gaps = 18/379 (4%) Query: 113 CVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIE-----QLE 167 CV P+ Q ++G + + + + + D EL + A L LIE +LE Sbjct: 143 CV--PIMRAQKVLGTIAAERVYMNPRLLKQDVELLTMIATMIAPLVELYLIENIERVRLE 200 Query: 168 SQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKA 227 ++N A E K + +IG S M ++ + I VA++ VLI GE+G GKELVA A Sbjct: 201 NENRRLKHALK-ERFKPSNIIGNSKPMQEVYELIHKVASTKATVLILGESGVGKELVANA 259 Query: 228 IHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDE 287 IH SP A LV NCA LPE++AESELFGH KG+FTGA++ G FE AD GT+FLDE Sbjct: 260 IHYNSPNAEAALVTSNCAPLPENLAESELFGHEKGSFTGALTMHKGCFEQADGGTIFLDE 319 Query: 288 IGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHR 347 +GELS +QAKL+RVLQ +RVG + ++VDVR++AATNR+L E V G FR DL++R Sbjct: 320 VGELSPTVQAKLVRVLQNRTFERVGGSKPVKVDVRIIAATNRNLVEMVEQGTFREDLYYR 379 Query: 348 LSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVREL 407 L+VFP++VPPLRERG DVI LA +F G + +S A N+L Y +PGNVREL Sbjct: 380 LNVFPITVPPLRERGSDVIALADHFVSAFSRENGKNVKRISTPALNMLMSYHWPGNVREL 439 Query: 408 EHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRET 467 E+ + RAV+L S D+VI + P + E L E +A + E Sbjct: 440 ENVMERAVIL-----SDDDVI---HSYNLPPSLQTSKESGT--AFGLTLEEKIKAVECEM 489 Query: 468 IRQALAQNHHNWAACARML 486 I +AL + + A+ L Sbjct: 490 IVEALKNSSGHIGEAAKEL 508 >UniRef50_Q9APD9 Transcriptional regulatory protein zraR n=89 Tax=Proteobacteria RepID=ZRAR_KLEOX Length = 443 Score = 254 bits (648), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 162/354 (45%), Positives = 211/354 (59%), Gaps = 28/354 (7%) Query: 133 MQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSP 192 ++P FD +L L ALA LS + P TP Q M+G SP Sbjct: 105 IKPLDFDKL---QLTLSEALAHTRLSES------------PVTETP---AAQFGMVGDSP 146 Query: 193 GMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVA 252 M L I +VA SD VLI GE+GTGKELVA+A+H +S R+ PLV LNCAAL ES+ Sbjct: 147 AMRALLNNITLVAPSDATVLIHGESGTGKELVARALHASSARSRRPLVILNCAALNESLL 206 Query: 253 ESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVG 312 ESELFGH KGAFTGA R G+F AD GTLFLDEIG++S +Q +LLR +Q ++QRVG Sbjct: 207 ESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVG 266 Query: 313 DDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYF 372 ++ L VDVR++AAT+RDL EEV AGRFR DL++RL+V + +PPLR R +D+ LA YF Sbjct: 267 SNQTLSVDVRLIAATHRDLAEEVSAGRFRQDLYYRLNVVTIDMPPLRHRREDIPPLARYF 326 Query: 373 CEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQ 432 ++ R + + A +LL HY++PGN+RELE+A+ RAVVL E I E + Sbjct: 327 LQRYAERNRKAVQGFTPQAMDLLIHYAWPGNIRELENAVERAVVLLTG-----EYISERE 381 Query: 433 HFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARML 486 P TP VA P +++ E ++E I AL + N AR L Sbjct: 382 ---LPLAITGTP-VADAPHGDDSIQPLVE-VEKEAILAALERTGGNKTEAARRL 430 >UniRef50_A3ESE7 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Leptospirillum sp. Group II RepID=A3ESE7_9BACT Length = 473 Score = 254 bits (648), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 142/317 (44%), Positives = 198/317 (62%), Gaps = 8/317 (2%) Query: 186 QMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCA 245 ++IG S M +L + ++A S VLI GE+GTGKELVA A+HE SPR P V LNCA Sbjct: 164 RIIGRSEKMQELFDLLPVIAQSKSTVLIEGESGTGKELVAHALHENSPRREGPFVKLNCA 223 Query: 246 ALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQY 305 AL E V ESELFGHVKGAFTGA+ +R G+FE+A GTLFLDEIGE+S ++Q KLLRVLQ Sbjct: 224 ALSEGVLESELFGHVKGAFTGAVQSRPGRFELASGGTLFLDEIGEISPSMQVKLLRVLQE 283 Query: 306 GDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDV 365 + +RVG + ++VDVRV+AATNRDL++ + G FR DL++RL V P+++PPLRER D+ Sbjct: 284 EEFERVGGTKTVKVDVRVIAATNRDLKQAMEEGSFRKDLYYRLRVIPVTLPPLRERQGDL 343 Query: 366 ILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGD 425 LL F E+ G + L++ A +L +Y +PGN+REL++ I A +L +R Sbjct: 344 PLLIQSFIERYNAELGKNIQGLTSEAMKVLLNYHYPGNIRELQNIIEHAALLCNDSR--- 400 Query: 426 EVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARM 485 ++ +H P LP ++ + ++E IR A+A++ N + AR Sbjct: 401 ---IDLRH--LPGDLLPAQSQSSFLELAMMEENPVRYVEKELIRLAMAESGGNVSEVARK 455 Query: 486 LETDVANLHRLAKRLGL 502 L + L R K + L Sbjct: 456 LSMGRSTLWRRLKEMKL 472 >UniRef50_C1A631 Putative NtrC family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A631_GEMAT Length = 472 Score = 253 bits (647), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 143/333 (42%), Positives = 192/333 (57%), Gaps = 20/333 (6%) Query: 186 QMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCA 245 +MIG SP M ++ + V +D VLI+GE+GTGKEL A A+H +S R P V +NCA Sbjct: 139 EMIGDSPAMRDVRALLARVGPTDARVLITGESGTGKELAAAALHVSSARRDRPFVRVNCA 198 Query: 246 ALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQY 305 A+P + ESE+FGH +GAFTGA R G+FE+A GTLFLDE+G+L QAKLLR ++ Sbjct: 199 AIPRDLVESEMFGHERGAFTGATERRIGRFELAHTGTLFLDEVGDLGAEAQAKLLRAIEA 258 Query: 306 GDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDV 365 +I+RVG + ++VDVR+LAATN+DL V G FR DLF RL+V P+ +PPLR+R D+ Sbjct: 259 REIERVGGGKPIKVDVRILAATNKDLTRAVADGSFREDLFFRLNVIPIHLPPLRDRPGDL 318 Query: 366 ILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGD 425 L +F + R R G V A L Y +PGN+REL + + R +L +G Sbjct: 319 PALVRHFSARHRTRTGRPLVQWHESALGALSAYRWPGNIRELANVVERLAIL----HAGS 374 Query: 426 EVILEAQHFAFPEVTLPTPEVAAVP----------------VVKQNLREATEAFQRETIR 469 EV PE +AVP L +A +A++R I Sbjct: 375 EVTRTEVRQVLPETAALPGATSAVPSGTEAGTEVDTPDPASAAHMPLSDALDAYERRLIS 434 Query: 470 QALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 ALAQ+ N A AR L+TD NL+R +RLGL Sbjct: 435 AALAQSDGNVAEAARRLQTDRPNLYRRMRRLGL 467 >UniRef50_P71229 Hydrogenase-4 transcriptional activator n=45 Tax=Enterobacteriaceae RepID=HYFR_ECOLI Length = 670 Score = 253 bits (646), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 150/318 (47%), Positives = 206/318 (64%), Gaps = 18/318 (5%) Query: 116 LPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALA---AGALSNAL-------LIEQ 165 +PL G + GAL L +FS+E +L+ +A A A+ NA L E Sbjct: 270 IPLTFGNHTPGALLLAHTSST---LFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQES 326 Query: 166 LESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVA 225 L+ +N + + +I S M L ++++IVA SD VLI GETGTGKE++A Sbjct: 327 LQQENHQLSEQL-LSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIA 385 Query: 226 KAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFL 285 +AIH+ SPR PLV +NCAA+P S+ ESELFGH KGAFTGAI+ G+FE+AD GTLFL Sbjct: 386 RAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFL 445 Query: 286 DEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLF 345 DEIG+L L LQ KLLRVLQ +I+R+G R + V+VRV+AATNRDL + V +FR+DLF Sbjct: 446 DEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLF 505 Query: 346 HRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVV--LSAGARNLLQHYSFPGN 403 +RL+VFPL +PPLR+R +D+ LLA +F + ++ + ++R + + A L + +PGN Sbjct: 506 YRLNVFPLELPPLRDRPEDIPLLAKHFTQ--KMARHMNRAIDAIPTEALRQLMSWDWPGN 563 Query: 404 VRELEHAIHRAVVLARAT 421 VRELE+ I RAV+L R Sbjct: 564 VRELENVIERAVLLTRGN 581 >UniRef50_B5WAL2 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Burkholderia sp. H160 RepID=B5WAL2_9BURK Length = 595 Score = 253 bits (646), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 124/244 (50%), Positives = 174/244 (71%), Gaps = 1/244 (0%) Query: 179 FEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNP 238 EA ++G + G+ + + + VA +D +VL++GETGTGKEL+A+A+H S R+ P Sbjct: 284 LEAEAGADLVG-TAGLQGVMQHVRQVAGTDASVLVTGETGTGKELIAQALHRMSARSGKP 342 Query: 239 LVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAK 298 LV LNCA LP ++ ESELFGH KGAFTGA++ ++G+FE+AD GTLFLDE+GEL L LQAK Sbjct: 343 LVKLNCAVLPANLVESELFGHEKGAFTGALARKAGRFELADEGTLFLDEVGELPLDLQAK 402 Query: 299 LLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPL 358 LLRVLQ G+ +R+G R + DVR++AATNR+L EE GRFRADL++RL+VFP+ +PPL Sbjct: 403 LLRVLQNGEFERLGSIRTQKTDVRIIAATNRNLAEEAATGRFRADLYYRLNVFPIELPPL 462 Query: 359 RERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLA 418 R R +D+ L +F + G ++ N+L+ Y +PGNVREL+H I RAV+L Sbjct: 463 RARPEDIEQLVEHFVRHYAAKYGRHIDAVADAQLNVLRAYRWPGNVRELQHVIERAVILT 522 Query: 419 RATR 422 + ++ Sbjct: 523 QGSQ 526 >UniRef50_C7PEX2 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PEX2_CHIPD Length = 653 Score = 253 bits (645), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 125/237 (52%), Positives = 171/237 (72%), Gaps = 4/237 (1%) Query: 187 MIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAA 246 ++G SP + I +V+A+ +VLI GE+GTGKEL+A+ IH SPR PL+ +NCAA Sbjct: 336 IVGRSPVFLSVLHSINMVSAAPSSVLILGESGTGKELIARCIHRQSPRKNKPLITVNCAA 395 Query: 247 LPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYG 306 LP + ESELFGH KGAFTGA R+GKFEMAD GT+FLDEIGEL + Q KLLRVLQ Sbjct: 396 LPAELIESELFGHEKGAFTGATDKRAGKFEMADGGTIFLDEIGELPIESQVKLLRVLQEK 455 Query: 307 DIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVI 366 + +RVG + ++VDVRV+AATNR+L +EV GRFR DL++RL+VFP+ +P LRER +D+ Sbjct: 456 EFERVGGSKVIKVDVRVIAATNRNLEKEVAEGRFRLDLYYRLNVFPVELPSLRERKEDIP 515 Query: 367 LLAGYFCEQCRLRQGLSRVV--LSAGARNLLQHYSFPGNVRELEHAIHRAVVLARAT 421 LLA +F + +L + LSR + +S A L+ Y +PGN+RE+EH + R++++ T Sbjct: 516 LLAQHFVD--KLSEKLSRNITDISPDALKALRSYDWPGNIREMEHVMERSLLMTTGT 570 >UniRef50_A6GJF4 Sigma-54 dependent, Vanadium nitrogenase transcriptional regulator, VnfA n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GJF4_9DELT Length = 507 Score = 253 bits (645), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 152/311 (48%), Positives = 199/311 (63%), Gaps = 18/311 (5%) Query: 186 QMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCA 245 +IG M Q+ I V+++D VL+ GE+GTGKELVA+AIH ASPRA P V +NCA Sbjct: 189 NIIGNHKSMAQVYDRIARVSSADTTVLLRGESGTGKELVARAIHFASPRAEAPFVAVNCA 248 Query: 246 ALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQY 305 ALPE ESELFGH +GAFTGAI R G+FE+AD GTLFLDEIGEL Q KLLRVLQ Sbjct: 249 ALPEGTLESELFGHERGAFTGAIGARKGRFELADGGTLFLDEIGELRPHTQVKLLRVLQE 308 Query: 306 GDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDV 365 +RVG R DVRVL AT+ DL + G FR DL++RL+VF + +PPLRERG+D+ Sbjct: 309 RRFERVGGATTRRCDVRVLTATHADLEAAMARGEFREDLYYRLNVFEIMLPPLRERGEDI 368 Query: 366 ILLAGYFCEQC--RLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRS 423 + LA +F E+ R R ++R+ A AR+LL + +PGNVRELE+ I RAV+L Sbjct: 369 LALADFFVERYGPRQRPPVTRIGHDA-ARHLLA-WDWPGNVRELENCIERAVLLT----- 421 Query: 424 GDEVILEAQHF-------AFPEVTLPTPEVAAVPVVK-QNLREATEAFQRETIRQALAQN 475 ++ ++EA+H A P + A+ V + + L EA EA +RE + +ALA + Sbjct: 422 -NDGVIEAEHLPPTLRGAAGPSRARASNTPASRAVAEGRTLDEALEAVEREILERALADS 480 Query: 476 HHNWAACARML 486 N A+ AR L Sbjct: 481 GGNRASAARAL 491 >UniRef50_Q1N5U9 Sigma-54 dependent transcriptional regulator/sensory box protein n=1 Tax=Bermanella marisrubri RepID=Q1N5U9_9GAMM Length = 479 Score = 253 bits (645), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 129/280 (46%), Positives = 183/280 (65%), Gaps = 4/280 (1%) Query: 140 VFSD--EELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQL 197 VF + E R+ +AL N L E+LE++N + E+ Q+ +IG SP + L Sbjct: 125 VFKNISERKRIESALQKALTENRFLKEKLEAENSYL--QSEIESNYQSDIIGQSPAIEHL 182 Query: 198 KKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELF 257 + +I + A + N+LI GE+GTGKELVA+AIH+ S R LV LNC A+PE + +SELF Sbjct: 183 QTQISLSAPTSANILIQGESGTGKELVARAIHQQSERQAQTLVKLNCGAIPEGLVDSELF 242 Query: 258 GHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCL 317 GH KGAFTGA+ R G+FE+A+ GTLFLDE+ EL L Q KLLRVLQ G+ +RVG ++ + Sbjct: 243 GHEKGAFTGAVKQRIGRFELANKGTLFLDEVSELPLDAQVKLLRVLQEGEFERVGGNKTI 302 Query: 318 RVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCR 377 RVDVR++AA+N++L + V G FR DL++RL+VF + VPPLRER D+ +L+ +F ++ Sbjct: 303 RVDVRIIAASNKNLEQAVHDGSFRLDLYYRLNVFSVQVPPLRERKSDLPILSHFFAKKAC 362 Query: 378 LRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVL 417 G S L + + HY +PGN+REL + I +L Sbjct: 363 ADMGKSFKGLHMPSLKWMSHYQWPGNIRELSNWIEHNAIL 402 >UniRef50_B6WRE4 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WRE4_9DELT Length = 521 Score = 253 bits (645), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 146/316 (46%), Positives = 197/316 (62%), Gaps = 16/316 (5%) Query: 112 ACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEE-LRLIAAL---AAGALSN------AL 161 A + +P+ ++GAL++D + D + DE L +IA++ AA A N A Sbjct: 117 AFICVPIKFEDEVLGALSVDRVFADAVTLEEDERILTIIASMIAHAARARQNVMDERVAA 176 Query: 162 LIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGK 221 + E + +N L P +G S M + ++I VA S VL+ GE+GTGK Sbjct: 177 IEENMRLRNALSAPLRPH------GFVGNSDAMRLVYEQISQVAPSSTTVLLYGESGTGK 230 Query: 222 ELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNG 281 EL A AIH A R+ P + LNCAALPE++ ESELFGH KGAFTGA R G+FE+AD G Sbjct: 231 ELAAHAIHSAGKRSKGPFISLNCAALPENLIESELFGHEKGAFTGASGIRKGRFELADGG 290 Query: 282 TLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFR 341 TLFLDE+GELSL QAKLLRVLQ +R+G L VDVR++ ATNRDL V G FR Sbjct: 291 TLFLDEVGELSLLTQAKLLRVLQERCFERLGGTESLSVDVRIITATNRDLARMVEEGTFR 350 Query: 342 ADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFP 401 DL++RL+VFP+ +PPLRER +D+ LA YF ++ G S + +S ++LQ Y++P Sbjct: 351 RDLYYRLNVFPIHMPPLRERQNDIQPLAAYFVDKYAAANGRSGIRISLAVMDMLQRYTWP 410 Query: 402 GNVRELEHAIHRAVVL 417 GN+RELE+ + RAV+L Sbjct: 411 GNIRELENVMERAVLL 426 >UniRef50_A0L4D6 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L4D6_MAGSM Length = 353 Score = 252 bits (644), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 133/257 (51%), Positives = 176/257 (68%), Gaps = 9/257 (3%) Query: 187 MIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAA 246 +IG +P M +L K IE VAA+D VLI GE+GTGKEL+ +AIH SPR PL+ +NC A Sbjct: 4 IIGSAPAMRKLFKLIERVAAADSTVLIHGESGTGKELICRAIHNTSPRHNGPLIAVNCGA 63 Query: 247 LPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYG 306 +PE + ESELFGH KG+FTGA+ +R GKF A+NGT+FLDEIG++S LQ K+LRVLQ Sbjct: 64 IPEDLLESELFGHAKGSFTGAVRDRPGKFVTANNGTIFLDEIGDMSPKLQVKMLRVLQER 123 Query: 307 DIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVI 366 ++ VG R + V+VRV+AAT+++L +EV GRFR DLF+RL+V P+ VPPLR+R +DV Sbjct: 124 IVEPVGALRSVEVNVRVIAATHKNLSKEVEEGRFREDLFYRLNVVPIQVPPLRDRIEDVS 183 Query: 367 LLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDE 426 L +F E+C R V + A ++ Q YS+ GNVRELE+ + R +VLA DE Sbjct: 184 SLVEHFMEKCAARSNCPPVKIGAQVMSIFQRYSWKGNVRELENLMERLIVLA-----DDE 238 Query: 427 VILEAQHFAFPEVTLPT 443 V L+ PE L T Sbjct: 239 VTLD----DLPENMLDT 251 >UniRef50_B0SC18 Transcriptional regulator n=7 Tax=Bacteria RepID=B0SC18_LEPBA Length = 705 Score = 252 bits (644), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 125/244 (51%), Positives = 177/244 (72%), Gaps = 5/244 (2%) Query: 187 MIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAA 246 +IG + M ++ ++I++VA S +VLI+GE+GTGKE++A AIH S R+ NP V +NCAA Sbjct: 364 LIGKAASMEKMFEKIQLVADSRASVLITGESGTGKEMIANAIHYNSSRSENPFVKINCAA 423 Query: 247 LPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYG 306 +PE++ ESELFGH KG+FTGA++++ GKFE+AD GT+FLDEIGE+ L LQ+KLLRVLQ Sbjct: 424 IPENLLESELFGHKKGSFTGAVTDKKGKFELADTGTIFLDEIGEMDLNLQSKLLRVLQER 483 Query: 307 DIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVI 366 +I+ +G + +VDVR++AATN +L + V +FRADLF+RL+V ++ PPLR+R +D+ Sbjct: 484 EIEAIGSTKAKKVDVRIIAATNAELEQLVAEKKFRADLFYRLNVVKINTPPLRDRVEDIP 543 Query: 367 LLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDE 426 LL +F E+ S +S A LL Y +PGNVRELE+ I RAVVLA+ DE Sbjct: 544 LLMNHFLEKYTKDNNKSIKGISREASRLLLKYRWPGNVRELENVIERAVVLAQ-----DE 598 Query: 427 VILE 430 ++ E Sbjct: 599 ILNE 602 >UniRef50_UPI00016C5695 DNA-binding protein Fis / transcriptional regulator, Fis family n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C5695 Length = 635 Score = 252 bits (644), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 129/245 (52%), Positives = 172/245 (70%), Gaps = 4/245 (1%) Query: 186 QMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCA 245 +++G SP + + + + VA +D VLI+GETGTGKELVA+A+H ASPR PL+ LNCA Sbjct: 325 EIVGQSPALVSVLQRVSKVAGTDSTVLITGETGTGKELVARAVHSASPRKAKPLIKLNCA 384 Query: 246 ALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQY 305 ALP + ESELFGH KGAFTGA++ + G+FE+AD GTLFLDE+GELSL QAKLLRVLQ Sbjct: 385 ALPTHLVESELFGHEKGAFTGAVARKPGRFELADGGTLFLDEVGELSLEAQAKLLRVLQE 444 Query: 306 GDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDV 365 + +RVG ++VDVRV+AATNRDL + V G FRADL +RL+VFP+ +P LRER D+ Sbjct: 445 REFERVGGTAPVKVDVRVIAATNRDLAQLVKEGAFRADLLYRLNVFPVRLPALRERPGDI 504 Query: 366 ILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGD 425 LL +F + R G +S + L Y +PGN+RELE+ I RA +L+ G Sbjct: 505 PLLVRFFVTKFAGRLGKRIERVSGDTLDALVGYDWPGNIRELENVIERAAILS----DGP 560 Query: 426 EVILE 430 E++++ Sbjct: 561 ELVID 565 >UniRef50_B3Q676 Transcriptional regulator, NifA subfamily, Fis Family n=9 Tax=Bacteria RepID=B3Q676_RHOPT Length = 561 Score = 252 bits (643), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 171/464 (36%), Positives = 244/464 (52%), Gaps = 20/464 (4%) Query: 32 LRQVLECDASALLRYDSRQFIPLAID--GLAKDVLGRRFALEGHPRLEAIARAGDVVRFP 89 +RQ + ++ YD D GL ++ GR G + G + P Sbjct: 79 MRQQMRMQRGVMMLYDRHSDAIFIHDSFGLTEEERGRGIYAPGEGITGKVVETGKPIIIP 138 Query: 90 ADSELPDPYDGLIPGQESLKVH--ACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEEL- 146 + PD D + K A +P+ Q ++G + + + +Q + D EL Sbjct: 139 RVIDSPDFLDRTRAHNKGRKQDKLAFFCVPIVLAQKVLGTICAERVYMNQRLLNQDAELL 198 Query: 147 RLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQ----TQMIGLSPGMTQLKKEIE 202 ++A+L A A+ LIE ++ + + +KQ +IG S M ++ + Sbjct: 199 AMVASLIAPAVE-LYLIENVDKVRLETENRRLKSELKQRFRPANIIGNSKPMQEVYAMVH 257 Query: 203 IVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKG 262 VA++ VL+ GE+G GKELVA A+H SP A P + NCAALPE++AESELFGH +G Sbjct: 258 KVASTKATVLLLGESGVGKELVASALHYNSPVADGPFIKANCAALPEALAESELFGHERG 317 Query: 263 AFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVR 322 AFT AI+ G FE A GT+FLDE+GELSL QAKLLRVLQ +RVG + ++VDVR Sbjct: 318 AFTSAIATHKGYFEQASGGTIFLDEVGELSLPTQAKLLRVLQERTFERVGGAKPVKVDVR 377 Query: 323 VLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGL 382 ++AATNR+L E V G FR DLF+RL+VFP+++PPLR+RG DVI LA +F G Sbjct: 378 IIAATNRNLAEMVAEGTFREDLFYRLNVFPITIPPLRDRGSDVITLADHFVTTYSAEIGK 437 Query: 383 SRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLP 442 +S A N+L Y +PGNVRELE+ I R+V+LA +E ++ P + P Sbjct: 438 PIKRISTPAINMLMSYHWPGNVRELENVIERSVILA------EEGVIHGYDLP-PSLQTP 490 Query: 443 TPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARML 486 T L + A + E I +AL ++ N A L Sbjct: 491 TETGTG---FSGTLEDRVTAVEYEMIVEALKASNGNVGQAATTL 531 >UniRef50_Q2RHS4 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Bacteria RepID=Q2RHS4_MOOTA Length = 748 Score = 252 bits (643), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 158/361 (43%), Positives = 212/361 (58%), Gaps = 24/361 (6%) Query: 151 ALAAGALSNALLIEQLESQNM-LPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDL 209 LA + I QLE N L + F+ K Q++G S M ++ + IE VA +D Sbjct: 393 GLAENRMCLPYFIAQLEKSNFHLRQELKAFQG-KFGQLVGNSAAMQEVYRLIEKVAKTDA 451 Query: 210 NVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAIS 269 VLI GE+GTGKELVA+AIH S R+ P V +NCAALPE++ ESELFGH +GAFTGA++ Sbjct: 452 TVLIRGESGTGKELVARAIHYHSRRSEAPFVSINCAALPETLLESELFGHARGAFTGAVT 511 Query: 270 NRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNR 329 + G FE A+ GT+FLDEIG++SL LQ+KLLRVLQ G+ RVG+ R RV+VRVLAATNR Sbjct: 512 AKKGLFEEANEGTIFLDEIGDISLGLQSKLLRVLQEGEFLRVGETRPTRVNVRVLAATNR 571 Query: 330 DLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSA 389 DL + V G FR +L +RL+V + +PPLRER DD+ LLA +F E+ R G + Sbjct: 572 DLEKAVKDGAFRPELLYRLNVITIWLPPLRERRDDIPLLARHFLEKSCQRLGKEVNGFTH 631 Query: 390 GARNLLQHYSFPGNVRELEHAIHRAVVLARATRS--GD------EVILEAQHFAFPEVTL 441 A + L +PGNVRELE+ I RAV+L + R GD + A +AF Sbjct: 632 EAMDALIRADWPGNVRELENVIERAVILTESKRIELGDLPRQFRNMAAGASGWAFTR--- 688 Query: 442 PTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLG 501 + +EA A++ I QAL ++ A A +L + L+ + KR Sbjct: 689 -----------GMSFKEAVAAYESRLILQALEESQGVQARAAEILGLKRSTLNEMIKRYN 737 Query: 502 L 502 L Sbjct: 738 L 738 >UniRef50_C1A7J8 Putative NtrC family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A7J8_GEMAT Length = 457 Score = 251 bits (642), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 134/264 (50%), Positives = 178/264 (67%), Gaps = 4/264 (1%) Query: 157 LSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGE 216 L NA QL +N D + +++G S G+ L + IE V + VLI+GE Sbjct: 114 LRNAFTNRQLTEEN----DRLRETIESRYEIVGRSFGIRSLLERIERVTGTPARVLITGE 169 Query: 217 TGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFE 276 GTGKELVA+AIH S RA P + +NCAA+P + ESELFGH+KG+FTGAI++R+GKFE Sbjct: 170 NGTGKELVARAIHRGSQRARKPFIEVNCAAIPSELIESELFGHMKGSFTGAIADRAGKFE 229 Query: 277 MADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVL 336 A GTLFLDEIG++S + QAK+LRVLQ G + R+G + ++VDVRVLAATN+DL EE+ Sbjct: 230 QAHGGTLFLDEIGDMSQSAQAKVLRVLQDGFVTRIGGSKPVQVDVRVLAATNKDLEEEIA 289 Query: 337 AGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQ 396 AGRFR DL++RL+V P++VP LRER +D+ LL +F +Q R GL +S A L Sbjct: 290 AGRFREDLYYRLNVVPITVPALRERREDIPLLVRHFLQQFAERDGLPARSISDEALQRLS 349 Query: 397 HYSFPGNVRELEHAIHRAVVLARA 420 +PGNVREL + + R V+LA A Sbjct: 350 ELDWPGNVRELRNTMERLVILASA 373 >UniRef50_Q1IRB0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IRB0_ACIBL Length = 458 Score = 251 bits (641), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 137/301 (45%), Positives = 195/301 (64%) Query: 186 QMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCA 245 ++IG P M +E++ +A SD VL+ GE+GTGKEL A+AIH+ S R+ P V LNCA Sbjct: 141 RIIGEHPTMQNSAREMQRIAGSDSTVLLLGESGTGKELFARAIHQLSIRSTQPFVALNCA 200 Query: 246 ALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQY 305 A+PE + E+ELFGH KGAFTGA + +SGKFEMA+ GT+FLDEIGEL L LQ+KLLRVL+ Sbjct: 201 AMPEGLIENELFGHEKGAFTGANTRKSGKFEMANRGTIFLDEIGELPLNLQSKLLRVLEE 260 Query: 306 GDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDV 365 ++R+G L++DVRV+AATNR+L + V AG FR DL++RL+VFP+ +PPLRERG+DV Sbjct: 261 HVVERLGSTMPLQLDVRVVAATNRELEQAVEAGAFRRDLYYRLAVFPIRIPPLRERGEDV 320 Query: 366 ILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGD 425 IL+A +F R R+ L+ A L+ + +PGNVREL++ I RA +L + Sbjct: 321 ILIAEHFLAHFRQELKKPRLSLAPDALAALRAHLWPGNVRELQNTIERAAILHDTEVTAA 380 Query: 426 EVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARM 485 ++ L A + V+L + + + +A+ ++ I L + N +A A Sbjct: 381 DLGLSANLRSAAAVSLGEHSIDMGGSLPEVSAQASRTIEKAKIEATLRECKWNKSAAAER 440 Query: 486 L 486 L Sbjct: 441 L 441 >UniRef50_B8FJU0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FJU0_DESAA Length = 443 Score = 251 bits (641), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 148/320 (46%), Positives = 195/320 (60%), Gaps = 10/320 (3%) Query: 175 DATPFEAVKQ-TQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASP 233 + TP A K ++I M + + ++ VA S VLISGE+GTGKEL A+ IH +S Sbjct: 122 NGTPKAAGKSPVKIITQDDRMKRCLEVVDSVADSKAAVLISGESGTGKELFARQIHYSSS 181 Query: 234 RAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSL 293 R V +N AALPE++ ESELFGH KGAFTGAI+ + GKFE+A GTL LDEI E+ + Sbjct: 182 RKDKNFVAVNVAALPETLLESELFGHEKGAFTGAINRKIGKFELASGGTLLLDEITEMDI 241 Query: 294 ALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPL 353 LQAKLLRVLQ ++ RVG + VDVRV+A TNRD+ + + G+FR+DL++RL+V PL Sbjct: 242 GLQAKLLRVLQESEVDRVGGTSPVNVDVRVVATTNRDVEQAIADGKFRSDLYYRLAVIPL 301 Query: 354 SVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHR 413 +PPLRER DVILLA +F + R G + L+ A+N L + +PGNVRELE+ I R Sbjct: 302 KLPPLRERSSDVILLAEHFIRKYNARDGKNVKGLTKNAQNTLLNLDWPGNVRELENTIER 361 Query: 414 AVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALA 473 AV+L + GD+ I F P P ++P V LRE E + I QAL Sbjct: 362 AVLLCK----GDQ-IDHNDLFMEPPPPKALPRQDSIPSVSTTLREMEE----QMIYQALD 412 Query: 474 QNHHNWAACARMLETDVANL 493 Q N A++L V L Sbjct: 413 QTEGNRTHAAQILGISVRTL 432 >UniRef50_B8GM58 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GM58_THISH Length = 509 Score = 251 bits (641), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 148/321 (46%), Positives = 198/321 (61%), Gaps = 5/321 (1%) Query: 186 QMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCA 245 +++G S + +L +I VA S+ VLI+GETGTGKEL+A+AIH S R+ PL+ +NCA Sbjct: 188 EILGESAALRRLLADIGRVAPSEATVLITGETGTGKELIARAIHRHSRRSQGPLIKVNCA 247 Query: 246 ALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQY 305 A+ ++ ESE FGH KGAFTGA R G+F++AD GTLFLDE+GE+ L LQAKLLRVLQ Sbjct: 248 AITATLQESEFFGHEKGAFTGAAQRRDGRFKLADGGTLFLDEVGEMPLDLQAKLLRVLQE 307 Query: 306 GDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDV 365 G+ + VG R +RVDVRV+AAT+RDL + V G FR DL +RL+VFPL PPLRERG+DV Sbjct: 308 GEFEPVGSGRTVRVDVRVIAATHRDLTQMVREGGFREDLLYRLNVFPLHAPPLRERGEDV 367 Query: 366 ILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGD 425 +LLA + ++G + LS R L+ + +PGNVRELE+ I RA + T G Sbjct: 368 VLLAEAIATRLARQEGATLAPLSPADRARLKAHPWPGNVRELENVIERAWITGTDTPDG- 426 Query: 426 EVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWA---AC 482 V+ + EVT TP +AA P E + +R I +AL + Sbjct: 427 RVLNLVRALPGSEVTPRTPGLAADPDAVFTAAEMLQ-MERSNIERALVSCQWKLSGVGGA 485 Query: 483 ARMLETDVANLHRLAKRLGLK 503 AR+L L K LG++ Sbjct: 486 ARLLGLHPNTLASRMKSLGIR 506 >UniRef50_A9EN62 Sigma-54 dependent transcriptional regulator n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9EN62_SORC5 Length = 648 Score = 251 bits (641), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 160/409 (39%), Positives = 229/409 (55%), Gaps = 27/409 (6%) Query: 110 VHACVGLPLFAGQNLIGALTLDGMQ-PDQFDVFSDEELRLIAALAAGALSNALLI----- 163 + + + +PL+ G+ +IG L D P + E L ++AA A+ A++NA LI Sbjct: 251 IRSTLAVPLWKGEEIIGVLQADNRSVPGMLNAGDLETLLVLAANASLAVANARLIKRLVL 310 Query: 164 --EQLESQNML---PGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETG 218 E+L+ +N + +IG S M ++ +++ V + + VLI GETG Sbjct: 311 AEERLQKENSFLKGREERRRGGGGGAVDIIGNSDAMRKVIGQLDKVVDTRVTVLIEGETG 370 Query: 219 TGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMA 278 TGKEL+A A+H S R V NCAAL ES+ ESELFGH KG+FTGA + G FE+A Sbjct: 371 TGKELIAAAVHYRSRRRDKLFVAQNCAALAESLLESELFGHKKGSFTGATEEKKGLFEIA 430 Query: 279 DNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAG 338 D GTLFLDEI E L+LQ+KLLR LQ G+I+ VG V+VR++AATNR+L +EV G Sbjct: 431 DGGTLFLDEITETPLSLQSKLLRALQEGEIRPVGATSPKHVNVRIVAATNRNLEDEVAKG 490 Query: 339 RFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHY 398 RFR DL++RL VFP+ +PPLRER DD+ LLA +F E+ G S A L+ Y Sbjct: 491 RFREDLYYRLKVFPIRLPPLRERRDDISLLAAHFLERYADEIGKPCGGFSQQAMELMVAY 550 Query: 399 SFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPE-----VAAVPVVK 453 +PGNVREL++ + R V+ LE F PE+ P VA K Sbjct: 551 DWPGNVRELQNEVQRIVIQ-----------LEPGAFGTPELLSPRIRQVEGLVARAGTPK 599 Query: 454 QNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 +L+E +A ++ + +AL +++N A+ L LH+ ++ G+ Sbjct: 600 GSLKEMMDAVEKFFLLEALRGHNNNKTNAAKSLGITREGLHKKLRQYGI 648 >UniRef50_A6EHB3 Sigma-54-dependent transcriptional regulator n=1 Tax=Pedobacter sp. BAL39 RepID=A6EHB3_9SPHI Length = 664 Score = 251 bits (640), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 126/236 (53%), Positives = 167/236 (70%) Query: 186 QMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCA 245 +++G SP M ++ + VA S VLI GETG GKEL+A AIH+AS RA +V +NCA Sbjct: 351 EIVGGSPQMQEVFNLMGQVAPSTATVLILGETGVGKELIAGAIHQASDRAERQMVRINCA 410 Query: 246 ALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQY 305 A+P ++ ESELFGH KG+FTGA R+GKFE+AD T+FLDEIGELSL LQ KLLRVLQ Sbjct: 411 AIPANLIESELFGHEKGSFTGATDRRTGKFELADQSTIFLDEIGELSLDLQVKLLRVLQE 470 Query: 306 GDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDV 365 + +R+G + VDVRV+AATNR+L +EV AGRFR DL++RL+VFP+S+P LR+R D+ Sbjct: 471 KEFERIGGSGTISVDVRVIAATNRNLLDEVEAGRFRMDLYYRLNVFPISLPSLRDRRADI 530 Query: 366 ILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARAT 421 LLA +F E+ +++ G S + + Y +PGN+RELEH I R V+L T Sbjct: 531 PLLANFFLERYKMKSGKKISGFSQKVMSAMMKYRWPGNIRELEHLIERQVILTEGT 586 >UniRef50_P09133 Nif-specific regulatory protein n=18 Tax=Rhizobiales RepID=NIFA_AZOC5 Length = 615 Score = 251 bits (640), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 147/328 (44%), Positives = 202/328 (61%), Gaps = 28/328 (8%) Query: 114 VGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQL------- 166 +G+P+ A +++G L++D + DE++R + + A + + + +L Sbjct: 164 IGVPIKADHHVMGTLSIDRIWDGTARFRFDEDVRFLT-MVANLVGQTVRLHKLVASDRDR 222 Query: 167 --------------ESQNMLPGDATPFEAVKQTQM--IGLSPGMTQLKKEIEIVAASDLN 210 E P A EA + M +G SP + +L ++VA S+ Sbjct: 223 LIAQTHRLEKALREEKSGAEPEVA---EAANGSAMGIVGDSPLVKRLIATAQVVARSNST 279 Query: 211 VLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISN 270 VL+ GE+GTGKEL A+AIHE SPR P V +NCAALPESV ESELFGH KGAFTGA++ Sbjct: 280 VLLRGESGTGKELFARAIHELSPRKGKPFVKVNCAALPESVLESELFGHEKGAFTGALNM 339 Query: 271 RSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRD 330 R G+FE+A GTLFLDEIGE++ A QAKLLRVLQ G+ +RVG +R L+VDVR++ ATN++ Sbjct: 340 RQGRFELAHGGTLFLDEIGEITPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVCATNKN 399 Query: 331 LREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAG 390 L E V G FRADL++R+ V PL +PPLRER D+ LA F ++ L ++LSA Sbjct: 400 LEEAVSKGEFRADLYYRIHVVPLILPPLRERPGDIPKLAKNFLDRFNKENKL-HMMLSAP 458 Query: 391 ARNLLQHYSFPGNVRELEHAIHRAVVLA 418 A ++L+ FPGNVRELE+ I R LA Sbjct: 459 AIDVLRRCYFPGNVRELENCIRRTATLA 486 >UniRef50_D0MEW0 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MEW0_RHOM4 Length = 495 Score = 250 bits (639), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 155/397 (39%), Positives = 229/397 (57%), Gaps = 25/397 (6%) Query: 112 ACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALA---AGALSNALLIEQLES 168 ACV PL + LIGA+ LD + Q F+ + L + A A A A+ NA L + L Sbjct: 119 ACV--PLRIKERLIGAIYLDSL--SQRGRFTRDNLPFLEAFAHQAAIAIENAQLYQALRE 174 Query: 169 QNM-LPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKA 227 +N L + + ++G SP M ++ + V +D VLI GE+GTGKEL+A+A Sbjct: 175 ENRRLRSEIQRLHGFDE--IVGQSPAMREVFDTMARVLDTDATVLIEGESGTGKELIARA 232 Query: 228 IHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDE 287 IH S R P V + C +LP+ + ESELFG+ KGAFTGA+S++ G FE+AD GT+FLDE Sbjct: 233 IHYNSERKDKPFVVVFCGSLPDELLESELFGYKKGAFTGALSDKKGLFEVADGGTVFLDE 292 Query: 288 IGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHR 347 +G+LS +Q LLRVLQ G+I+RVGD + +VDVRV++ATN+ LRE V G+FR DL++R Sbjct: 293 VGDLSPRMQTALLRVLQEGEIRRVGDTQVRKVDVRVISATNKPLRELVQQGKFREDLYYR 352 Query: 348 LSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVREL 407 L+ ++VPPLR R D+ LLA +F ++ +++ + A LL+ Y +PGNVREL Sbjct: 353 LNTIQITVPPLRHRRGDIPLLAHHFLDKYAVKKRAHIKGFTPEALELLERYHWPGNVREL 412 Query: 408 EHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRET 467 E+ I RAVVLAR ++ + P+ P +P+ + +R Sbjct: 413 ENTIERAVVLARGE------LITPEDLRLPDTDGADPFEPDLPL---------KEVERRV 457 Query: 468 IRQALAQNHHNWAACARMLETDVANLHRLAKRLGLKD 504 + + L ++ N + AR+L LH K +++ Sbjct: 458 VLRTLKRHGGNISETARVLGVSRRWLHYKLKEWDVQN 494 >UniRef50_Q1INE5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Acidobacteria RepID=Q1INE5_ACIBL Length = 459 Score = 250 bits (639), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 145/355 (40%), Positives = 218/355 (61%), Gaps = 20/355 (5%) Query: 153 AAGALSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVL 212 A +S AL ++ E +N+ + E ++ S M ++ IE VA +D VL Sbjct: 113 TAHLVSKALAHKRTEQENVRLKEQ--IEEHAHVDLVWRSDAMKKINDAIETVAPTDATVL 170 Query: 213 ISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRS 272 I+GE+GTGKE+VA+AIH S R +P+V ++C AL E++ ESELFGH KGAFTGA + Sbjct: 171 ITGESGTGKEVVARAIHALSTRRFHPMVPVHCGALTETLLESELFGHEKGAFTGAQYRKK 230 Query: 273 GKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLR 332 GKFE+A+ GT+FLDEIG++SL Q LLRVLQ +I RVG ++ ++VD R++AATN+DL Sbjct: 231 GKFEVAEGGTVFLDEIGDISLKTQTDLLRVLQEREIVRVGGNQPIKVDFRIVAATNKDLE 290 Query: 333 EEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQC--RLRQGLSRVVLSAG 390 + + G FR DLF+RL+VF + +PPLR+R +D+ LL +F ++ ++ + ++RV ++ Sbjct: 291 KLIEEGHFRPDLFYRLNVFRIELPPLRDRREDIPLLVNHFTKKFAEQMNKRVTRV--ASP 348 Query: 391 ARNLLQHYSFPGNVRELEHAIHRAVVLARAT--RSGDEVILEAQHFAFPEVTLPTPEVAA 448 A N+LQ Y +PGNVRELE+A+ RA+V+A+ R D +L+ + A T+ + Sbjct: 349 AMNMLQQYPWPGNVRELENAVERAMVVAQEPELRETD-FVLKVKAAA----TMSSTNGTG 403 Query: 449 VPVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 P + E ++E I L + + N A ML+ D LH KR G + Sbjct: 404 TP-------KTLEDIEKEHILHVLDETNWNQTRAAEMLDIDRVTLHHKIKRYGWQ 451 >UniRef50_C9RS71 Transcriptional regulator, NifA subfamily, Fis Family n=5 Tax=Bacteria RepID=C9RS71_FIBSS Length = 509 Score = 250 bits (638), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 160/404 (39%), Positives = 223/404 (55%), Gaps = 26/404 (6%) Query: 112 ACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNM 171 A + +PL +IG L++D D+ D L I A G +N + E + M Sbjct: 117 AFICVPLIHDGQVIGTLSIDRPVDGSTDLDRDVALLEIIANITGDAANECIELHGEREAM 176 Query: 172 LPGDATPFEAVKQTQMIGLSPG--------MTQLKKEIEIVAASDLNVLISGETGTGKEL 223 L E K M+ +PG M Q+ +++ VA SD VLI G +GTGKE+ Sbjct: 177 LE------ENRKLRDMLSNNPGELVGNCREMRQVYEQVRQVAPSDATVLIRGGSGTGKEM 230 Query: 224 VAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTL 283 +A+AI S R P + LNCAALPE++ ESELFGH KGAFTGA++ R G+ E A+ GTL Sbjct: 231 IARAIVNLSARKDKPFITLNCAALPENLVESELFGHEKGAFTGALNRRIGRAEAANGGTL 290 Query: 284 FLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRAD 343 FLDE+G+L++ Q KLLR LQ RVG + L DVR LAAT+R+L E + G+FR D Sbjct: 291 FLDEVGDLTMQTQVKLLRFLQERTFSRVGSNEELHSDVRFLAATSRNLEELIAQGKFRED 350 Query: 344 LFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGN 403 LF+RL++FP+++P L +R D+ILLA +F E+ LR LS A NLL Y +PGN Sbjct: 351 LFYRLNIFPITMPDLAKRKSDIILLAEHFIEKMNLRYNKKVGRLSTTAINLLMSYHWPGN 410 Query: 404 VRELEHAIHRAVVLARATRSGDEVILEAQHFAFP---EVTLPTPEVAAVPVVK-QNLREA 459 VRELE+ I R V+ A D+ I + P + +L V P K L Sbjct: 411 VRELENCIERGVLTAT-----DDCI---HSYNLPPSLQTSLSVGSVGGTPSDKIAPLEVM 462 Query: 460 TEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 + ++RE I +A+ +N N +A R L ++ +LG+K Sbjct: 463 MDNYEREIITEAIKRNDGNISAAGRDLGVSPRMMNYRMNKLGIK 506 >UniRef50_C7PN78 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PN78_CHIPD Length = 541 Score = 250 bits (638), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 142/312 (45%), Positives = 192/312 (61%), Gaps = 24/312 (7%) Query: 131 DGMQP--------DQFDVFSDEELRLIAALA---AGALSNALLIEQLESQ--------NM 171 +G QP DQ D FS+ + RL A+ +SN L E +E Q Sbjct: 141 NGQQPKGLLYLFTDQRDAFSEVDARLTNAITNILGIGISNILANETIEKQLQEIERFRQK 200 Query: 172 LPGDATPFEAVKQTQ-----MIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAK 226 L + + + Q ++G S M + + VA S+ VL+ GETGTGKE+ A+ Sbjct: 201 LQNENHYLQEQQGLQNTFADIVGTSAEMQRRITILSRVAPSESTVLLLGETGTGKEVFAR 260 Query: 227 AIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLD 286 AIH SPR N ++ +NCAALP + ESELFGH KG+FTGA R GKFE+AD+ TLFLD Sbjct: 261 AIHAGSPRRDNLMIKVNCAALPPHLIESELFGHEKGSFTGATQRRIGKFELADHSTLFLD 320 Query: 287 EIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFH 346 EIGEL L Q+KLLRVLQ +I+R+G ++V+VR++AATNR+L EEV AGRFR+DL++ Sbjct: 321 EIGELPLEFQSKLLRVLQEKEIERIGGKGSIKVNVRIVAATNRNLEEEVRAGRFRSDLYY 380 Query: 347 RLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRE 406 RL VFP+++PPLRER +D+ LA +F ++ +SA A L HY +PGNVRE Sbjct: 381 RLHVFPIAIPPLRERKEDIPALANHFLQRFAANSRREAPSISAKAMEGLMHYEWPGNVRE 440 Query: 407 LEHAIHRAVVLA 418 LEH + R ++L Sbjct: 441 LEHLMERTLLLT 452 >UniRef50_B8DLN3 Two component, sigma54 specific, transcriptional regulator, Fis family n=12 Tax=Deltaproteobacteria RepID=B8DLN3_DESVM Length = 491 Score = 250 bits (638), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 128/232 (55%), Positives = 163/232 (70%) Query: 186 QMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCA 245 +M G SP M L+ +I VA +D VLI+GE GTGKEL A+AIH S RA PLV +NCA Sbjct: 141 EMNGRSPVMETLRGQIARVAPTDAWVLITGENGTGKELAARAIHAGSRRADRPLVAVNCA 200 Query: 246 ALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQY 305 A+PE + ESELFGH KGAFTGA S ++GKFEMA GTLFLDEIG++SL QAK+LR+LQ Sbjct: 201 AIPEELIESELFGHEKGAFTGADSAKAGKFEMAHKGTLFLDEIGDMSLKTQAKILRILQE 260 Query: 306 GDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDV 365 +RVG R +RVDVRV+AATN++L +E+ AG FR DL++RL VFPL +PPLRER DV Sbjct: 261 QQFERVGGHRTMRVDVRVIAATNKNLEDEIAAGTFREDLYYRLRVFPLVLPPLREREGDV 320 Query: 366 ILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVL 417 LL F ++ G+ + A+ L Y +PGNVREL + + R ++L Sbjct: 321 PLLIDLFAQRLARDYGVRPATFAPDAQEALARYPWPGNVRELRNFVERMLIL 372 >UniRef50_A4VJ57 Nitrogen fixation positive regulatory protein n=10 Tax=cellular organisms RepID=A4VJ57_PSEU5 Length = 521 Score = 250 bits (638), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 135/265 (50%), Positives = 181/265 (68%), Gaps = 5/265 (1%) Query: 184 QTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLN 243 + ++G + M ++ ++ VA + VLI GE+GTGKEL+A AIH SPRA PLV LN Sbjct: 208 ENMVVGHTASMRRVFDQVRRVAKWNSTVLILGESGTGKELIASAIHYNSPRAHQPLVRLN 267 Query: 244 CAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVL 303 CAALPE++ ESELFGH KGAFTGA+ R G+FE AD GTLFLDEIGE+S QAKLLRVL Sbjct: 268 CAALPETLLESELFGHEKGAFTGAVKQRKGRFEQADGGTLFLDEIGEISPMFQAKLLRVL 327 Query: 304 QYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGD 363 Q G+++RVG + ++V+VR++AATNRDL EV G+FR DL++RL+V + VPPLRER Sbjct: 328 QEGELERVGGSQTVKVNVRIVAATNRDLEHEVEQGKFREDLYYRLNVMAIRVPPLRERSA 387 Query: 364 DVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLAR-ATR 422 D+ LA + ++ +QG ++ L+ A LL + +PGNVRELE+ + R+ +++ T Sbjct: 388 DIPELAEFLLDKIARQQG-RKLKLTDSALRLLMSHRWPGNVRELENCLERSAIMSEDGTI 446 Query: 423 SGDEVILEA-QHFAFPEVTLPTPEV 446 S D V L H A P P PEV Sbjct: 447 SRDVVSLTGLDHDATP--LAPVPEV 469 >UniRef50_Q0EZK3 Response regulator of hydrogenase 3 activity (Sensor HydH) n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EZK3_9PROT Length = 463 Score = 249 bits (637), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 119/237 (50%), Positives = 170/237 (71%) Query: 183 KQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYL 242 + T +IG P + +L + + ++A SD VLI+GE+G GKE++AKA+H++ R+ PLV + Sbjct: 141 QNTGLIGQCPAIQKLTETVSLLANSDSTVLITGESGCGKEVLAKALHKSGSRSGKPLVSI 200 Query: 243 NCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRV 302 NC A+PE + ESELFGHVKGAFTGA+ R G+FE+A+ GT+FLDEIG++S LQ KLLRV Sbjct: 201 NCGAIPEELLESELFGHVKGAFTGAVRARPGRFEIANGGTIFLDEIGDMSAKLQVKLLRV 260 Query: 303 LQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERG 362 LQ + VG + + VDVRV+AAT+RDL E+ AGRFR DL++RL+V PL++PPLRERG Sbjct: 261 LQERCFEPVGSQQSIHVDVRVIAATHRDLEAEIAAGRFREDLYYRLNVIPLTLPPLRERG 320 Query: 363 DDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLAR 419 DD++LL +F + ++ +S + ++ +Y +PGNVREL++ I R L R Sbjct: 321 DDILLLTDHFITRFNQQKKADITGVSDEVKRIILNYQWPGNVRELQNLIERVTTLKR 377 >UniRef50_B3EAH2 Two component, sigma54 specific, transcriptional regulator, Fis family n=7 Tax=Desulfuromonadales RepID=B3EAH2_GEOLS Length = 472 Score = 249 bits (637), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 147/329 (44%), Positives = 202/329 (61%), Gaps = 20/329 (6%) Query: 186 QMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCA 245 + +G S M ++ + I VA +D VLI+GE+GTGKELVA+AIH+ S R +P V ++C Sbjct: 144 RFVGKSHEMVKVYRRIMQVAPTDSTVLITGESGTGKELVARAIHKHSQRRDHPFVAVDCT 203 Query: 246 ALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQY 305 +L E++ ESELFGHVKG+FTGA+ ++G F++A+ GTLFLDE+ LSL QAKLLRVLQ Sbjct: 204 SLVENLLESELFGHVKGSFTGAMHTKTGLFKVAEGGTLFLDEVSNLSLTTQAKLLRVLQE 263 Query: 306 GDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDV 365 ++ +G + +++R++AATNR LRE V G FR DLF RL++ P+ +PPLRER D+ Sbjct: 264 REVTPIGGTQPTPINIRLVAATNRSLREMVAEGTFREDLFFRLNIIPMDLPPLRERTGDI 323 Query: 366 ILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGD 425 LL G+ G ++AGA +LQ YSFPGNVRELE+ I RAVVLA D Sbjct: 324 PLLVGHTVRTVAEEVGKDIKGVTAGAMQVLQSYSFPGNVRELENIIERAVVLAE-----D 378 Query: 426 EVI----LEAQHFAFPEVTLPTPEVAAVPV-------VKQNLRE-ATEAFQRETIRQALA 473 +I LE H A P V L + AVP+ K++LRE A E ++ + AL Sbjct: 379 SLITPDDLELNHAASPTVLL---DYTAVPLSVEELKETKRHLREQAVEDIEKAFVVNALQ 435 Query: 474 QNHHNWAACARMLETDVANLHRLAKRLGL 502 +N N A N + K+LG+ Sbjct: 436 RNRGNITRAAEETGMLRPNFQAMMKKLGI 464 >UniRef50_Q06065 Acetoacetate metabolism regulatory protein atoC n=32 Tax=Proteobacteria RepID=ATOC_ECOLI Length = 461 Score = 249 bits (637), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 137/296 (46%), Positives = 187/296 (63%), Gaps = 4/296 (1%) Query: 191 SPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPES 250 SP M + K+ +A S +VLISGE+GTGKEL+A+AIH S RA P + +NCAALPES Sbjct: 149 SPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPES 208 Query: 251 VAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQR 310 + ESELFGH KGAFTGA + R G FE A+ GTL LDEIGE+ L LQAKLLR+LQ + +R Sbjct: 209 LLESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFER 268 Query: 311 VGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAG 370 +G + ++VD+R++AATNRDL+ V G FR DLF+RL+V L +PPLR+R +D+ LLA Sbjct: 269 IGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLAN 328 Query: 371 YFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILE 430 +F ++ + + A +LL +S+PGN+REL + I RAVV+ SG + E Sbjct: 329 HFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVM----NSGPIIFSE 384 Query: 431 AQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARML 486 + EV PV ++NL+E + ++ I + L Q N A ML Sbjct: 385 DLPPQIRQPVCNAGEVKTAPVGERNLKEEIKRVEKRIIMEVLEQQEGNRTRTALML 440 >UniRef50_Q30WZ9 Two component transcriptional regulator, Fis family n=2 Tax=Desulfovibrionaceae RepID=Q30WZ9_DESDG Length = 465 Score = 249 bits (637), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 139/326 (42%), Positives = 198/326 (60%), Gaps = 12/326 (3%) Query: 186 QMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCA 245 +M G S + +L+ +I VA +D VLI+GE GTGKE+ A++IH +S R PLV +NCA Sbjct: 141 EMTGNSASIVELRGQIGRVAPTDAWVLITGENGTGKEIAARSIHASSRRKDKPLVAVNCA 200 Query: 246 ALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQY 305 A+PE + ESELFGH KGAFTGA + ++GKFEMA GTLFLDEI ++SL QAK+LR+LQ Sbjct: 201 AIPEELIESELFGHEKGAFTGAETAKTGKFEMAHQGTLFLDEIADMSLKTQAKILRILQE 260 Query: 306 GDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDV 365 +RVG + ++VDVRV+AATN+ L +E+ AGRFR DL++RL V PL VPPLR+RGDDV Sbjct: 261 QSFERVGGHKTVKVDVRVIAATNKSLEDEIAAGRFREDLYYRLRVIPLVVPPLRQRGDDV 320 Query: 366 ILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGD 425 +LL G F + G V + A + L Y +PGNVREL++ + R +++ SG Sbjct: 321 MLLIGEFMNRMTAEHGFRPVTFAPDACSALLCYHWPGNVRELKNFVERMLIM----HSGQ 376 Query: 426 EV---ILEAQHFAFPEVTLPTPEVAA-----VPVVKQNLREATEAFQRETIRQALAQNHH 477 V +L ++ +P P A +P + + A AF+ + L + Sbjct: 377 TVTAAMLPPEYRCAGAGIMPQPCTAGPSDGMIPEGVMDFKAARTAFEARFLEAKLQEFGG 436 Query: 478 NWAACARMLETDVANLHRLAKRLGLK 503 N A + + + L+R K ++ Sbjct: 437 NITRLAEAIGLERSYLYRKLKSYNIQ 462 >UniRef50_B8FJD2 Transcriptional regulator, NifA subfamily, Fis Family n=2 Tax=Bacteria RepID=B8FJD2_DESAA Length = 1038 Score = 249 bits (636), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 138/326 (42%), Positives = 197/326 (60%), Gaps = 11/326 (3%) Query: 106 ESLKVHACVGLPLFAGQNLIGALTLDG-MQPDQFDVFSDEELRLIAALAAGALSNALLIE 164 E+ VH+C+ +P+ + ++G L +D + P L ++ AA AL NA + E Sbjct: 645 ENKVVHSCICVPMKFRETVLGVLYVDNRIFPSALKESDIRILDFFSSQAAIALDNARIHE 704 Query: 165 Q--------LESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGE 216 Q E + L + F+ + +G + ++ +++ +AA+D VLI GE Sbjct: 705 QNRALIRKLEEEKRYLEEQQSEFQP--PVEFVGECAAVRKVLNDVKKIAATDSTVLILGE 762 Query: 217 TGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFE 276 TG GKEL++ AIHE S RA P + +NC+ PE + SELFGH KGAFTGA R G+FE Sbjct: 763 TGVGKELISTAIHERSSRAGKPFIRVNCSMFPEGLIASELFGHEKGAFTGADKRRLGRFE 822 Query: 277 MADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVL 336 +AD GTLFLDEIG++S +Q +LLRVLQ + +RVG LR D R+LAATNRDLRE+V Sbjct: 823 LADGGTLFLDEIGDISHEVQVRLLRVLQNKEFERVGGRSTLRSDFRLLAATNRDLREDVK 882 Query: 337 AGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQ 396 G+FR DL++RL+V L +PPLRER +D+ LL YF ++ G R ++ + L Sbjct: 883 TGKFREDLYYRLNVLSLKIPPLRERKEDIPLLVDYFLDRHAKNLGKPRGAVTPEDLDKLV 942 Query: 397 HYSFPGNVRELEHAIHRAVVLARATR 422 Y +PGNVRELE+ I R+ +L+ R Sbjct: 943 AYDWPGNVRELENVIERSAILSSGAR 968 >UniRef50_C7LP58 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfovibrionales RepID=C7LP58_DESBD Length = 469 Score = 249 bits (636), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 133/252 (52%), Positives = 171/252 (67%), Gaps = 4/252 (1%) Query: 173 PGDATPFE----AVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAI 228 P A+P A ++ ++G P +T++ VA S VLISGE+GTGKE+ A+ I Sbjct: 119 PAPASPRSVAQSAPREVSIVGTHPSVTRVLALARQVAPSKATVLISGESGTGKEMFARFI 178 Query: 229 HEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEI 288 H S R P V +NCAALPE + ESELFGH KG+FTGAIS + GKFE+A GTL LDEI Sbjct: 179 HAHSGRENAPFVAVNCAALPEHLLESELFGHEKGSFTGAISRKLGKFELASGGTLLLDEI 238 Query: 289 GELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRL 348 E++LALQAKLLR LQ G+I RVG ++VDVRVLA TNR+L + V G FR DLF+RL Sbjct: 239 SEMALALQAKLLRALQEGEIDRVGGVETVKVDVRVLATTNRNLEQSVEKGEFRQDLFYRL 298 Query: 349 SVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELE 408 +V PL +P L +RGDDV+LLA +F + GL + LS AR+ L + +PGNVREL+ Sbjct: 299 NVIPLRLPSLAQRGDDVLLLADFFIRRLTREYGLGSLQLSTEARDWLMAHDWPGNVRELQ 358 Query: 409 HAIHRAVVLARA 420 + + RAV+LA A Sbjct: 359 NLMERAVLLAGA 370 >UniRef50_B5Y7I9 Acetoacetate metabolism regulatory protein AtoC (Ornithine/argininedecarboxylase inhibitor) (Ornithine decarboxylase antizyme) n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y7I9_COPPD Length = 459 Score = 249 bits (636), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 149/320 (46%), Positives = 206/320 (64%), Gaps = 26/320 (8%) Query: 178 PFEAVKQTQ--MIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRA 235 P + K+T M+G+S M ++ K I VA++D+ VLI+GE+GTGKELV++AIH SPR Sbjct: 142 PIKGSKETSSLMVGMSAAMQEVYKLIGRVASTDVTVLITGESGTGKELVSRAIHYNSPRN 201 Query: 236 VNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLAL 295 P V +NCAA+PE + ESELFG+ KGAFTGA + GKFE+A++GT+ LDEIG++S L Sbjct: 202 KGPFVVVNCAAIPEDLLESELFGYEKGAFTGADERKIGKFELANHGTILLDEIGDMSPML 261 Query: 296 QAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSV 355 QAK+LRVLQ I+R+G R + VDVRVLAATN+DL+ V +G FR DL+ RL+V + + Sbjct: 262 QAKILRVLQEHVIERIGGTRSIPVDVRVLAATNKDLQSLVKSGSFREDLYFRLNVVQIQL 321 Query: 356 PPLRERGDDVILLAGYF-----CEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHA 410 PPLRER +D+ LLA +F E + G++ V++A L Y +PGNVRELE+ Sbjct: 322 PPLRERKEDIPLLADHFIKKYAAETSKEVTGVTPEVMAA-----LMAYDYPGNVRELENI 376 Query: 411 IHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQ 470 I RAV L SG + L+ P+V P P A+ +K+ L EA +R RQ Sbjct: 377 IARAVALC----SGKVLTLDVLP---PQVVEPKP---ALRPLKEVLLEA----ERRAFRQ 422 Query: 471 ALAQNHHNWAACARMLETDV 490 A+A + A A +L+ D+ Sbjct: 423 AVAVAGLDPQAVADLLQVDL 442 >UniRef50_Q01W56 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01W56_SOLUE Length = 552 Score = 249 bits (636), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 156/342 (45%), Positives = 203/342 (59%), Gaps = 14/342 (4%) Query: 163 IEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKE 222 +EQL QN L + AV + + G S + +L + VA + +VLI GE+G GKE Sbjct: 222 VEQLREQNQLLRERL---AVSEPGIAGESIAIHKLLGLVARVAPQEASVLILGESGVGKE 278 Query: 223 LVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGT 282 LVA A+H SPRA P V +NCAAL E++ ESELFGH KGAFTGA++ + GK EMA+ GT Sbjct: 279 LVAHALHRLSPRAARPFVAINCAALTETLLESELFGHEKGAFTGAVAQKKGKLEMAEGGT 338 Query: 283 LFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRA 342 +FLDEIGEL+ LQAKLLRVLQ + +RVG ++DVR++AATNRDL EV G FR Sbjct: 339 VFLDEIGELAAPLQAKLLRVLQQREFERVGGTHTWKLDVRLVAATNRDLAAEVQRGAFRE 398 Query: 343 DLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPG 402 DL+HRL+V L VPPLRER D++ LA YF ++ R G ++ L YS+PG Sbjct: 399 DLYHRLNVVALRVPPLRERPGDILPLARYFLDRAIPRCGRMIKGIAPETEECLLAYSWPG 458 Query: 403 NVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEA 462 NVRELE+AI RAVVL GD ++ + PE L E A P L + Sbjct: 459 NVRELENAIERAVVL------GDTDWIQPED--LPETVL---EHGAAPQPPGALSNSVAD 507 Query: 463 FQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLKD 504 +R+ I A Q+ + A L +L RL + L L+D Sbjct: 508 TKRQLILAAWRQSGGDHDRAAERLNIHPNSLRRLIRTLKLRD 549 >UniRef50_C6VTN7 Sigma 54 interacting domain protein n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VTN7_DYAFD Length = 479 Score = 248 bits (634), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 149/341 (43%), Positives = 204/341 (59%), Gaps = 17/341 (4%) Query: 165 QLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELV 224 QLE QN + E +IG S M ++ + + V+ ++ VL+ GETGTGKELV Sbjct: 143 QLEEQNAYLLEEAK-EGFSYDDIIGSSGPMQRVFQLLSQVSFTNSTVLLLGETGTGKELV 201 Query: 225 AKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLF 284 A+AIH +S R +V +NCAA+P + ESELFGH KG+FTGA R GKFE+A+ TLF Sbjct: 202 ARAIHNSSARKDRLMVRVNCAAIPAHLIESELFGHEKGSFTGAFERRIGKFELANQATLF 261 Query: 285 LDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADL 344 LDEIGE+ L +QAKLLR +Q +I+R+G ++VDVR++AATNR+L EEV GRFR+DL Sbjct: 262 LDEIGEMPLDMQAKLLRAIQEREIERIGGKGVIKVDVRIIAATNRNLLEEVQQGRFRSDL 321 Query: 345 FHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNV 404 F+RL VFP+++PPLRER D+ LLA F + G S +S+ L Y +PGNV Sbjct: 322 FYRLHVFPITLPPLRERTGDISLLAKQFVGRFAKNNGKSISRISSNVMKALLAYPWPGNV 381 Query: 405 RELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQ 464 RELEH + R V+LAR D VI +V LP+P + + E + Sbjct: 382 RELEHQMERCVLLAR-----DHVI--------RDVLLPSPTQSGHAPAAGIYTKTHEENE 428 Query: 465 RETIRQALAQNH---HNWAACARMLETDVANLHRLAKRLGL 502 RE I + L Q + + A++L V L+ K+LG+ Sbjct: 429 REYIIRVLNQCNGKIYGPGGAAQLLNLKVGTLNSKIKKLGI 469 >UniRef50_Q1NIP6 Response regulator receiver n=2 Tax=Deltaproteobacteria RepID=Q1NIP6_9DELT Length = 461 Score = 248 bits (634), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 147/326 (45%), Positives = 194/326 (59%), Gaps = 25/326 (7%) Query: 187 MIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAA 246 +IG SP M ++ + I VA + NVLI GE+GTGKELVA+AIH+ SP + V + C+A Sbjct: 143 IIGNSPEMLKIYEVIRRVAPTQANVLIHGESGTGKELVARAIHQLSPAVQHQFVPIICSA 202 Query: 247 LPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYG 306 +PES+ ESELFGH KGAFTGA +NR+G FE A+ GT FLDEIGEL+ Q KLLRVLQ Sbjct: 203 IPESLFESELFGHAKGAFTGATTNRTGLFEQANYGTAFLDEIGELTPLTQTKLLRVLQER 262 Query: 307 DIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVI 366 +I+RVG+ +R++ R+++ATNRDL EEV AGRFR DLF+RL+V P+ VPPLRER DV Sbjct: 263 EIKRVGESVAIRINFRMISATNRDLEEEVAAGRFREDLFYRLAVVPIRVPPLRERKSDVP 322 Query: 367 LLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDE 426 LL +F + G +S+ A LL +Y FPGNVRELE+ I R V Sbjct: 323 LLVEHFLAKYSRLFGKDIRKISSYALELLMNYDFPGNVRELENIIERGVA---------- 372 Query: 427 VILEAQHFAFPE-VTLPTPEVAAVP------------VVKQNLREATEAFQRETIRQALA 473 +E PE +TL P V + L A F+R+ I +AL Sbjct: 373 --MENSQIILPESLTLTGRRHGGQPAPADDRGSLEADVFNRGLEPALTDFERQMIIKALQ 430 Query: 474 QNHHNWAACARMLETDVANLHRLAKR 499 + ++ A +L T +L K+ Sbjct: 431 KAGNSKTRAAELLNTSFRSLRYKIKK 456 >UniRef50_D0LYF6 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LYF6_HALO1 Length = 462 Score = 248 bits (634), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 148/322 (45%), Positives = 193/322 (59%), Gaps = 11/322 (3%) Query: 186 QMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCA 245 Q++G + I VA ++ VL++GE+GTGKEL A+A+H+ASPRA P V LNCA Sbjct: 148 QILGEDSRLMDALHTIWEVADTECTVLVTGESGTGKELFARALHDASPRAGGPFVALNCA 207 Query: 246 ALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQY 305 A+PES+ E+ELFGH +GAFTGA +NR G+ A GTLFLDEIG++ LA QAKLLR+LQ Sbjct: 208 AIPESMVEAELFGHARGAFTGAHANREGRVAGASGGTLFLDEIGDMPLAAQAKLLRMLQD 267 Query: 306 GDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDV 365 I VG DR + +DVRV+AATN+DL V AGRFR DLF+RL+V P+ +PPLRERGDD+ Sbjct: 268 RTIMPVGSDRPVDIDVRVVAATNQDLESMVEAGRFRGDLFYRLNVIPVELPPLRERGDDI 327 Query: 366 ILLAGYFCEQCRLRQGLSRVVL-SAGARNLLQHYSFPGNVRELEHAIHRAVVLARA--TR 422 LA F Q R G + SA R + +HY +PGNVREL H I R V+L ++ Sbjct: 328 ARLAEAFLHQANRRNGRNVTGFESAAMRAMREHY-WPGNVRELSHLIERTVLLKKSGLIA 386 Query: 423 SGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAAC 482 D + A LPT E +LR A E +R I +AL + N Sbjct: 387 EADLRLRVAARGTGGHQVLPTVE-------GLDLRSAIEDVERRLIEEALDRTGGNRTEA 439 Query: 483 ARMLETDVANLHRLAKRLGLKD 504 A +L + L ++ KD Sbjct: 440 AALLGVNRTTLVEKIRKHSTKD 461 >UniRef50_A5W971 Two-component response regulator CbrB n=10 Tax=Proteobacteria RepID=A5W971_PSEP1 Length = 480 Score = 248 bits (633), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 129/242 (53%), Positives = 170/242 (70%) Query: 187 MIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAA 246 +IG M + +I VA +D NVLI GE+GTGKELVA+A+H S RA P++ +NCAA Sbjct: 152 IIGSCQPMQDMYSKIRKVAPTDSNVLIQGESGTGKELVARALHNLSRRAKAPMISVNCAA 211 Query: 247 LPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYG 306 +PE++ ESELFGH KGAFTGA + R+G E AD GTLFLDEIGEL L QA+LLRVLQ G Sbjct: 212 IPETLIESELFGHEKGAFTGASAGRAGLVEAADGGTLFLDEIGELPLEAQARLLRVLQEG 271 Query: 307 DIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVI 366 +I+RVG + +VDVR++AAT+RDL+ AG+FR DL++RL V L +P LRERG DV Sbjct: 272 EIRRVGSVQSQKVDVRLIAATHRDLKNLAKAGQFREDLYYRLHVIALKLPALRERGSDVN 331 Query: 367 LLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDE 426 +A F + R G + SA A ++HYS+PGNVRELE+A+ RAV+L+ + E Sbjct: 332 EIASVFLARQSARIGRDDLHFSAEAEQAIRHYSWPGNVRELENAVERAVILSESAEISAE 391 Query: 427 VI 428 ++ Sbjct: 392 LL 393 >UniRef50_A3ZU96 Probable two-component response regulator n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZU96_9PLAN Length = 651 Score = 248 bits (633), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 168/400 (42%), Positives = 225/400 (56%), Gaps = 22/400 (5%) Query: 106 ESLKVHA----CVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNAL 161 +SL H CV L G+ + GA L Q F L +AA A+ AL N Sbjct: 256 QSLAFHTRNLLCVPLVGRRGR-IFGAFELINKQLGNFTAEDQLGLTELAAHASSALENTQ 314 Query: 162 LIEQ-LESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTG 220 E+ L S+N L A ++IG P + L+ I VA S+L VL+ GE GTG Sbjct: 315 ETERILASRNRLA-----DAAAAAAELIGDCPAIATLRGTIRRVAESNLPVLVLGENGTG 369 Query: 221 KELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADN 280 KE+V+++IH S R PLV +NCAA+P+++ ESELFG KGAFTGA R GKFEMAD Sbjct: 370 KEVVSQSIHFRSDRRAQPLVAVNCAAVPDTLLESELFGREKGAFTGADETRPGKFEMADG 429 Query: 281 GTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRF 340 GTLFLDEIG+LSL+ Q+KLLRVL+ I RVG ++VDVR++AATNRDL E V +F Sbjct: 430 GTLFLDEIGDLSLSGQSKLLRVLEDQLIMRVGGTSEIQVDVRIIAATNRDLGELVREKKF 489 Query: 341 RADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSF 400 R DLF RL V + +PPLRERG D++ LA +F L+ G LS A+ L +++ Sbjct: 490 REDLFFRLHVVTIELPPLRERGTDILTLANHFLHHFSLKTGRQTPTLSEAAQRRLLAHAW 549 Query: 401 PGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREAT 460 PGNVREL + + R + L DEVI + + F + +P L +AT Sbjct: 550 PGNVRELRNTMERVIFL-----HSDEVI-QPESLQFHSLDSHDDAPMNLP-----LNDAT 598 Query: 461 EAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRL 500 FQR I++ + N +A A + +NL+R K+L Sbjct: 599 AEFQRRYIQRHVDAAQGNISAAAEKIGMHRSNLYRKMKQL 638 >UniRef50_D2QGL7 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Flexibacteraceae RepID=D2QGL7_9SPHI Length = 488 Score = 248 bits (633), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 141/300 (47%), Positives = 196/300 (65%), Gaps = 12/300 (4%) Query: 156 ALSNALL-IEQLESQNMLPGDATPF-EAVKQT----QMIGLSPGMTQLKKEIEIVAASDL 209 AL+ AL +E+L+ Q L + T E +KQT +++ S ++ + +E VA ++ Sbjct: 147 ALTKALAEVERLKDQ--LQAENTYLREEIKQTKNFDEIVTQSKAFQKVLRSVEQVAPTNT 204 Query: 210 NVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAIS 269 VLI GE+GTGKEL+A+A+H S R PLV +NCAALP ++ ESELFGH KGAFTGA + Sbjct: 205 TVLILGESGTGKELLARAVHNLSSRKNKPLVKINCAALPATLIESELFGHEKGAFTGATA 264 Query: 270 NRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNR 329 + G+FE+AD GT+FLDEIGE+ L LQAKLLRVLQ G+ +RVG + ++V+VRV+AATNR Sbjct: 265 QKVGRFELADGGTIFLDEIGEMPLDLQAKLLRVLQEGEFERVGSTKTMKVNVRVIAATNR 324 Query: 330 DLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSA 389 DL E GRFR DL++RLSVFP+ PLR R +D+ LL +FC + G + + A Sbjct: 325 DLEIESAEGRFREDLYYRLSVFPIVSLPLRTRKEDIPLLVRHFCAKHGADMGKTIDTIPA 384 Query: 390 GARNLLQHYSFPGNVRELEHAIHRAVVLA--RATRSGDEVILEAQHFAFPEVTLPTPEVA 447 + L Y +PGN+RELE+ + RA++++ R GD L + A + TL T E A Sbjct: 385 TVLDTLTDYHWPGNIRELENLVQRALIMSPGRTLVIGD--WLRKKPLANQKATLMTMEEA 442 >UniRef50_Q1DD25 Sigma-54 dependent DNA-binding response regulator n=1 Tax=Myxococcus xanthus DK 1622 RepID=Q1DD25_MYXXD Length = 450 Score = 248 bits (633), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 156/348 (44%), Positives = 214/348 (61%), Gaps = 17/348 (4%) Query: 156 ALSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISG 215 A+ NAL + L+ + DA + ++G S GM L++ I V SD +LI+G Sbjct: 116 AVRNALALGSLQEERERLLDAL----ARPGHLVGDSAGMASLRQLIARVGPSDTAILITG 171 Query: 216 ETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKF 275 ETGTGKE VA+A+H AS R LV +NCAA+P ++ ESELFGH KGAF+GA+S R+G+ Sbjct: 172 ETGTGKERVARALHLASGRKGR-LVAVNCAAIPSTLLESELFGHEKGAFSGALSRRAGRI 230 Query: 276 EMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEV 335 E A GTLFLDE+G++ L LQAKLLRVL+ +++R+G + VD RV+ AT++DL V Sbjct: 231 EQAHGGTLFLDELGDMPLELQAKLLRVLETKEVERLGGSLPVPVDARVVTATHQDLARAV 290 Query: 336 LAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLL 395 GRFR DL+ RL+V PL VPPLRER +D++ LA F + Q +VL+ GA L Sbjct: 291 KEGRFRQDLYFRLNVMPLQVPPLRERPEDLLPLARAFAAEFAGPQ--VPLVLAPGAETSL 348 Query: 396 QHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQ- 454 + Y++PGNVREL + I R +L R + L + + P+ T A+ P + Q Sbjct: 349 RAYAWPGNVRELRNLIERLNLL----RGEGPLTLGPELVSAPQAT----AAASRPSLGQK 400 Query: 455 NLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 + RE E F+RE IR AL Q + A AR+L+ D NL+R K LGL Sbjct: 401 SYREHVEDFERELIRAAL-QEGESIAGAARLLQVDRGNLYRRIKALGL 447 >UniRef50_A4J443 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Peptococcaceae RepID=A4J443_DESRM Length = 455 Score = 248 bits (632), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 137/321 (42%), Positives = 199/321 (61%), Gaps = 10/321 (3%) Query: 186 QMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCA 245 +IG SP M + K+I VA S+ VLI GE+GTGKELVA+AIH S R NP + +NCA Sbjct: 141 NIIGNSPSMRNVYKDIGRVADSNATVLIQGESGTGKELVARAIHYNSSRRNNPFIKVNCA 200 Query: 246 ALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQY 305 LP+S+ ESELFG+ KGAFTGA S + G+FE+A GT+F DEIGE+SLA QAKLLR +Q Sbjct: 201 NLPDSLLESELFGYEKGAFTGASSLKVGRFELAHEGTIFFDEIGEISLATQAKLLRAIQE 260 Query: 306 GDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDV 365 + RVG + ++V+VR+LAATNR L++ V G FR DLF RL+V + +PPLR+R +D+ Sbjct: 261 KEFDRVGGTKTIKVNVRILAATNRKLKQSVREGEFREDLFFRLNVVNIEIPPLRDRKEDI 320 Query: 366 ILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGD 425 LL +F + S A LL Y +PGNVRELE+ + R++++AR G Sbjct: 321 PLLIAHFLAKYNKEFNKEIKGFSKEAIKLLIGYDWPGNVRELENVVERSIIMAR----GA 376 Query: 426 EVILEAQHFAFPEVTLPTPEVAAVPVVKQN--LREATEAFQRETIRQALAQNHHNWAACA 483 ++ E PT + ++ +N L++ +R+ I +AL +N+ A Sbjct: 377 IIVPEDIQLGATVSQQPT----ELEILDENLSLKQIISDVERKVILKALEENNWCRTTVA 432 Query: 484 RMLETDVANLHRLAKRLGLKD 504 ++L+ + +L+ K LG+++ Sbjct: 433 KVLKINRRSLYAKMKELGIEE 453 >UniRef50_A1AL12 Transcriptional regulator, Fis family n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A1AL12_PELPD Length = 687 Score = 248 bits (632), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 145/324 (44%), Positives = 202/324 (62%), Gaps = 30/324 (9%) Query: 186 QMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCA 245 Q++G S + + +E VA + VL+ GETGTGKELVA+AIH SPR +V +NCA Sbjct: 374 QIVGQSEPIQGVLAMVEQVAPTPSTVLVYGETGTGKELVAQAIHNHSPRRDKLMVKVNCA 433 Query: 246 ALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQY 305 +LP S+ ESELFG +GA+TGA++ + G+FE+AD +LFLDEI ELSL LQ+KLLRVLQ Sbjct: 434 SLPSSLVESELFGRERGAYTGALTRQMGRFELADGSSLFLDEIAELSLELQSKLLRVLQE 493 Query: 306 GDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDV 365 G+ +R+G R ++VDVRV+AATNR+L EEV GRFR DL++RLSVFP+ VPPLRER +D+ Sbjct: 494 GEFERLGSPRTIKVDVRVIAATNRNLLEEVRKGRFREDLYYRLSVFPIVVPPLRERREDI 553 Query: 366 ILLAGYFCEQCRLRQGLSRVVLSAGARNL--LQHYSFPGNVRELEHAIHRAVVLARATRS 423 LLA F + + + +L R++ LQ YS+PGNVREL + I AV+++ Sbjct: 554 PLLAWEFVRD--FNEKMGKRILRIAKRDMLALQSYSWPGNVRELRNVIEYAVIVS----P 607 Query: 424 GDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNW---- 479 GDE+ ++ LP V A P + E +R I+ L + W Sbjct: 608 GDEL----------KIRLPENIVNAPPQMT-----TLEEMERHYIQDVLRRT--EWRIKG 650 Query: 480 -AACARMLETDVANLHRLAKRLGL 502 A +L+ + A L+ K+LG+ Sbjct: 651 EGGAAHILDLNPATLYSRMKKLGI 674 >UniRef50_C1SIN5 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SIN5_9BACT Length = 431 Score = 248 bits (632), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 146/348 (41%), Positives = 208/348 (59%), Gaps = 29/348 (8%) Query: 162 LIEQLESQNMLPGDA-TPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTG 220 L++ LE N GD TP E + + G+ + +++++VA +D VLI GE+GTG Sbjct: 108 LMDALEKINEQSGDVLTPVENYRFGG-VYTQEGLGSIIEQLKLVAPTDATVLILGESGTG 166 Query: 221 KELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADN 280 KE+VA++IH+ S RA P + +NCAAL E++ ESELFGHVKGAFT A+ + G FE AD Sbjct: 167 KEIVARSIHDNSKRAQRPYLAINCAALSENIIESELFGHVKGAFTTAVKDNKGLFEAADG 226 Query: 281 GTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRF 340 GTLFLDEIGELSL +QAKLLRVLQ G +RVGD R L+ +VR++AATNR+L++ G F Sbjct: 227 GTLFLDEIGELSLNVQAKLLRVLQEGAFERVGDTRTLKTNVRIVAATNRNLKKLSEKGDF 286 Query: 341 RADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNL--LQHY 398 R DL+ RL+VFP+ VPPLRER +++ L +F ++ + L +++ SA + L Y Sbjct: 287 REDLYFRLAVFPVEVPPLRERKEEIAPLVKFFIDKH--AEKLGKLIKSADPAYIRKLSDY 344 Query: 399 SFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPT--PEVAAVPVVKQNL 456 FPGN+RELE+ + R+++L T+ VTLP E ++ N Sbjct: 345 GFPGNIRELENIVERSIILTTGTK-------------LEPVTLPAFGTERDGGLSIRGN- 390 Query: 457 REATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLKD 504 +R+ I +AL + N A +L+ LH K L+D Sbjct: 391 -------ERDLIIKALKKTGGNKTKAAEILQISRRTLHNKLKEFDLED 431 >UniRef50_B4UM36 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Anaeromyxobacter sp. K RepID=B4UM36_ANASK Length = 465 Score = 248 bits (632), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 144/302 (47%), Positives = 190/302 (62%), Gaps = 9/302 (2%) Query: 187 MIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAA 246 ++G S M +++ ++ AASD+ VL++GETGTGK+L A+ IHE S RA P V +NCAA Sbjct: 138 VLGDSAPMRRVRDRLDAAAASDVPVLVTGETGTGKDLCARTIHERSHRAGRPFVVVNCAA 197 Query: 247 LPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYG 306 +PE++ ESELFGH KGAFTGA R G+FE AD GTLFLDE+GEL+ + QAKLLR L+ Sbjct: 198 IPEALFESELFGHEKGAFTGADRKRIGRFEAADGGTLFLDEVGELAASSQAKLLRALESS 257 Query: 307 DIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVI 366 + VG +R +RVDVRV+AATNRDL + G FR DL++RL+V L PPLRER DV Sbjct: 258 TFEPVGSNRSVRVDVRVIAATNRDLASAIARGAFRKDLYYRLNVIDLHAPPLRERRGDVP 317 Query: 367 LLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDE 426 +L F + R G L L + +PGNVREL+HA+ RAV LAR G Sbjct: 318 VLTAAFLARIAGRLGRPVPQLEPAVVAALAAHDYPGNVRELQHALERAVALAR----GGP 373 Query: 427 VILEAQHFAFPEVTLPTPEVAAVPVVK--QNLREATEAFQRETIRQALAQNHHNWAACAR 484 + LE H P++ P P A P + L EA E F+++ IR+AL + + A A Sbjct: 374 IRLE--HLP-PDLAGPLPAGEAAPAGEGLARLGEAVEQFEQQYIRRALEKTGGHRARAAA 430 Query: 485 ML 486 +L Sbjct: 431 LL 432 >UniRef50_Q39SU6 Two component, sigma54 specific, transcriptional regulator, Fis family n=10 Tax=Bacteria RepID=Q39SU6_GEOMG Length = 461 Score = 248 bits (632), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 137/301 (45%), Positives = 194/301 (64%), Gaps = 12/301 (3%) Query: 187 MIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAA 246 +IG+SP M ++ + I+ VA +D VLI+GE+GTGKELVA+AIH S R P V +NCAA Sbjct: 149 IIGISPPMEEVFRVIDRVADTDATVLITGESGTGKELVARAIHNRSSRRAAPFVAINCAA 208 Query: 247 LPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYG 306 +P + ESELFGHVKGAFTGA+ ++ GKF A+ GTLFLDE+GEL + LQ+KLLR LQ Sbjct: 209 IPRDLLESELFGHVKGAFTGAVQDKEGKFRQAEAGTLFLDEVGELPVELQSKLLRALQEK 268 Query: 307 DIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVI 366 ++Q VG +++DVRV+AATN DL E + GRFR DLF+RLSV P+ +PPLRER +D+ Sbjct: 269 EVQPVGGAHTIKLDVRVVAATNADLEEAIAEGRFREDLFYRLSVIPVHLPPLRERKEDIP 328 Query: 367 LLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARA-TRSGD 425 LL +F + G + V S ++ Y +PGNVRELE+ + R +++ A T D Sbjct: 329 LLVRHFA----AKHGGASVTFSPEILAVMAAYGWPGNVRELENTVERILIMRNADTIHPD 384 Query: 426 EVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARM 485 ++ + + P+ V +P +L E +RE + +AL +N+ N ++ AR Sbjct: 385 DLPEKVRRGRSPQREC---RVINLPDEGYSL----EQLEREIVVEALERNNWNQSSAARF 437 Query: 486 L 486 L Sbjct: 438 L 438 >UniRef50_D2QY56 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2QY56_9PLAN Length = 483 Score = 248 bits (632), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 145/322 (45%), Positives = 207/322 (64%), Gaps = 23/322 (7%) Query: 185 TQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNC 244 + MIG S M +L++ I+ S+ +LI GE+GTGKELVA+A+H AS RA P+V +NC Sbjct: 145 STMIGKSVAMQELQRLIQRAGPSEKAILIQGESGTGKELVARALHAASSRADRPMVVINC 204 Query: 245 AALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQ 304 AALPE + ESELFGH KGAFTGA++ + G FE+AD TLF+DEIGE+ +LQAKLLRVL+ Sbjct: 205 AALPEPLLESELFGHEKGAFTGAVAAKPGLFEVADGSTLFIDEIGEMPGSLQAKLLRVLE 264 Query: 305 YGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDD 364 G ++R+G + RV+VR+LAATNR +++EV AG FR DL++R++V L +PPLR R D Sbjct: 265 DGSLRRIGSLQERRVNVRILAATNRSMQDEVTAGNFREDLYYRINVMSLELPPLRSRTAD 324 Query: 365 VILLAGYFC-EQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLA--RAT 421 + LL +F + R+ LSA L+ Y++PGNVR+L +AI RA ++A R Sbjct: 325 IPLLVEHFLGKDWRIEP----TALSA-----LEQYAWPGNVRQLINAIERAKIMADGRTI 375 Query: 422 RSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAA 481 R+ D + E H A P++ LP P + + + A QR+ I + L + N + Sbjct: 376 RAND-LPTEVLH-ALPQIELP-PSLDDI--------DDLSAIQRQKIVEVLKREKGNKSR 424 Query: 482 CARMLETDVANLHRLAKRLGLK 503 ARML D L+RL ++ ++ Sbjct: 425 AARMLGIDRRKLYRLLEKFTIE 446 >UniRef50_D2MLD9 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MLD9_9BACT Length = 480 Score = 248 bits (632), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 127/243 (52%), Positives = 178/243 (73%), Gaps = 7/243 (2%) Query: 187 MIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAA 246 M+G + M Q+ +++++VA +D VLI GE+GTGKE++A AIH SPR L+ ++CAA Sbjct: 143 MVGKNERMRQVLEKVKLVATTDATVLIFGESGTGKEVIANAIHRNSPRCGQALIKVSCAA 202 Query: 247 LPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYG 306 LPE++ E+ELFGH +GAFTGA+ R G+FE+A GTLFLDEIGE++ +Q KLLRVLQ Sbjct: 203 LPETLLEAELFGHERGAFTGALKQRLGRFELAHKGTLFLDEIGEIAPMVQVKLLRVLQEK 262 Query: 307 DIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVI 366 +RVG + DVR++ AT ++L+EEV AGRFR DLF+RL+V +++PPLRER +D++ Sbjct: 263 RFERVGGTETIGSDVRLVCATQKNLKEEVEAGRFREDLFYRLNVVQVALPPLRERKEDIL 322 Query: 367 LLAGYFCEQCRLRQGLSRVV--LSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSG 424 +LA + ++ R + RV+ S AR++L HYSFPGNVRELE+AI RAV LA + G Sbjct: 323 VLAEHLLQRSTSR--VQRVMKGFSVAARDVLLHYSFPGNVRELENAIERAVALA---QEG 377 Query: 425 DEV 427 DE+ Sbjct: 378 DEI 380 >UniRef50_A8ZV27 Transcriptional regulator, Fis family n=2 Tax=Desulfobacteraceae RepID=A8ZV27_DESOH Length = 510 Score = 248 bits (632), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 127/261 (48%), Positives = 176/261 (67%), Gaps = 1/261 (0%) Query: 162 LIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGK 221 L +QLE++ + E +IG S G+ + +IE +A SD VL+ GETGTGK Sbjct: 178 LKQQLEAERAYLQEEIKLE-YNHEHIIGQSDGLKYVLYKIEQIADSDTTVLVLGETGTGK 236 Query: 222 ELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNG 281 ELVA+AIH S R ++ +NCAALP ++ ESELFGH KGAFTGA + +G+FE+A+ Sbjct: 237 ELVARAIHNLSRRKNRTMLKVNCAALPTNLIESELFGHEKGAFTGAHARHTGRFEVANGT 296 Query: 282 TLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFR 341 TLFLDEIGEL L LQ KLLRVLQ G+ +R+G +VD R++AATNR+L EEV G FR Sbjct: 297 TLFLDEIGELPLELQPKLLRVLQDGEFERLGSSHSTKVDARIIAATNRNLEEEVRNGNFR 356 Query: 342 ADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFP 401 DL++RL+VFP+++PPLR+R DD+ LL ++ ++ R G + + + LQ Y +P Sbjct: 357 EDLWYRLNVFPITMPPLRDRLDDIPLLVEFYVKKISRRMGKTIETIPSKIMETLQAYPWP 416 Query: 402 GNVRELEHAIHRAVVLARATR 422 GNVRELE+ + RAV+ + T+ Sbjct: 417 GNVRELENVLERAVINSSGTK 437 >UniRef50_C6WY59 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Methylophilaceae RepID=C6WY59_METML Length = 457 Score = 247 bits (631), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 143/314 (45%), Positives = 194/314 (61%), Gaps = 24/314 (7%) Query: 185 TQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNC 244 T +IG SP M L + I VA VL++GETGTGKELVA+AIH ASPR V +NC Sbjct: 141 TGLIGNSPAMQHLAESIRQVAPEKATVLVAGETGTGKELVARAIHAASPRNNALFVAVNC 200 Query: 245 AALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQ 304 AA+P + ESELFGH KGAFTGA+ R GKFE+AD GTLFLDE+ E+ + LQAKLLR LQ Sbjct: 201 AAIPHEMLESELFGHEKGAFTGAVKERIGKFELADGGTLFLDEVTEMPMQLQAKLLRALQ 260 Query: 305 YGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDD 364 I+R+G +R + VD+RV+AATNR+ R+ + G+ R DL++RL+VF + +P L+ R D Sbjct: 261 ENVIERLGGNRPIAVDIRVVAATNRNPRDAIKDGKLREDLYYRLNVFRIDLPALKARKSD 320 Query: 365 VILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSG 424 + LLA +F + RV +SA A +L Y +PGNVRELE+ + RA ++ SG Sbjct: 321 IELLATHFLAK-------RRVDISAQAVQVLMQYDWPGNVRELENVLERAAII-----SG 368 Query: 425 DEVILEAQHFA---------FPEVTL--PTPEVAAVPVVKQNLREATEAFQRETIRQALA 473 ++ I + QH F + T + A P L A E +R+ I +ALA Sbjct: 369 NQQI-QPQHLPAEMLNSNGEFIDATALGHNADTAEAPQNPLCLPNAVEQLERQLIAKALA 427 Query: 474 QNHHNWAACARMLE 487 Q + N + A++LE Sbjct: 428 QTNGNKSKAAKLLE 441 >UniRef50_C8WZC4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8WZC4_DESRD Length = 448 Score = 247 bits (631), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 141/316 (44%), Positives = 186/316 (58%), Gaps = 13/316 (4%) Query: 187 MIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAA 246 M+G S M +L IE VA + NVL++GETGTGKELVA+ IH A P V ++CAA Sbjct: 145 MVGKSKAMQELFNLIEKVAQYEANVLVTGETGTGKELVARGIHYAGQEENLPFVPIDCAA 204 Query: 247 LPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYG 306 +PE++ ESELFGH +GAFTGA + G+ E+A GTLFLDEIGEL LALQ K LR LQ Sbjct: 205 VPETLLESELFGHSRGAFTGAAEQKKGQIELAHGGTLFLDEIGELPLALQKKFLRFLQEK 264 Query: 307 DIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVI 366 +I R+G+ R +VDVR++AATNRDL E+ AG++R DLF+RL+V + +PPLRER DD+ Sbjct: 265 EIVRLGETRRRKVDVRIIAATNRDLEAEIAAGQWREDLFYRLNVISIEIPPLRERRDDIP 324 Query: 367 LLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDE 426 L +F + + G + ++ + Y +PGNVRELE+ I RAVVL GD Sbjct: 325 PLVNHFLAKYNAQNGKAIQGMTGEVMEVFMAYDWPGNVRELENVIERAVVLC----MGDS 380 Query: 427 VILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARML 486 + + E + P P V NL E ++ I Q L + N +A AR L Sbjct: 381 IAMSCLPPKLQERSAPAPSTDGV-----NLME----MEKRLIVQTLEKTEQNQSAAAREL 431 Query: 487 ETDVANLHRLAKRLGL 502 L K GL Sbjct: 432 GISRKQLRTKMKHHGL 447 >UniRef50_Q1D217 Sigma-54 dependent DNA-binding reponse regulator CrdA n=7 Tax=Cystobacterineae RepID=Q1D217_MYXXD Length = 498 Score = 247 bits (631), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 142/354 (40%), Positives = 200/354 (56%), Gaps = 37/354 (10%) Query: 187 MIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAA 246 M+G P M ++ I+ A S+ VLI+GE GTGKEL+A+A+H+ S R P V LNCAA Sbjct: 139 MVGSGPAMQRIFSLIQRTAPSEGRVLITGENGTGKELIARALHQHSKRKGQPFVKLNCAA 198 Query: 247 LPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYG 306 +P + ESELFGH KGAFTGA+S R GKFE+A GTLFLDEIG++ A+QAKLLRVLQ G Sbjct: 199 VPHELIESELFGHEKGAFTGAVSVRRGKFELAHEGTLFLDEIGDMPQAMQAKLLRVLQEG 258 Query: 307 DIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVI 366 +++RVG +VDVRV+AATN++L E+ AGRFR DL++R++V + PPLRER +D+ Sbjct: 259 ELERVGGAETHKVDVRVVAATNKNLEAEIAAGRFREDLYYRINVVQIHSPPLRERREDLP 318 Query: 367 LLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARA---TRS 423 L F ++ + G + LS A ++ Y +PGNVREL + + R +L TR+ Sbjct: 319 DLIKTFLDEACAKNGRRPLTLSPDALAVMSAYDYPGNVRELRNLVERLAILCEGPIVTRT 378 Query: 424 GD-EVILEAQHFAFP---------------------------------EVTLPTPEVAAV 449 E++ ++ P T P V Sbjct: 379 DALELLPRGRNVPPPAPVETPASPLPPPSPEAAVVLASSTPAPAIAAPVATEPPAPVGFR 438 Query: 450 PVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 P + RE E +RE I+ L+ H N AR+L+ + + ++ K LGL+ Sbjct: 439 PRADRTFREQVEDAEREIIQHVLSHTHDNVTEAARLLDLERGHFYKKMKALGLR 492 >UniRef50_A8ZU14 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Deltaproteobacteria RepID=A8ZU14_DESOH Length = 468 Score = 247 bits (630), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 136/317 (42%), Positives = 197/317 (62%), Gaps = 13/317 (4%) Query: 186 QMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCA 245 +++G P M + + VA + +LI+GE+GTGKEL+A+AIHE S RA +P V +NC Sbjct: 145 RIVGSHPKMKHIYNMVRQVAQTRTRILITGESGTGKELIARAIHEQSDRANHPFVVVNCG 204 Query: 246 ALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQY 305 +PE++ ESELFGH KG+FTGA+ ++ G F +A GT+FLDEIGELS+ LQ KLLRV+Q Sbjct: 205 GIPENLMESELFGHRKGSFTGAVMDKKGLFTIAHKGTIFLDEIGELSMPLQVKLLRVVQD 264 Query: 306 GDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDV 365 G ++VG + VD R+L+ATN++L +EV+ G FR DLF+RL+V L+VPPLRER D+ Sbjct: 265 GAFKQVGGTEEISVDARILSATNKNLSQEVIDGNFREDLFYRLNVIELNVPPLRERKSDI 324 Query: 366 ILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGD 425 +LA +F E+ G + LS+ A ++L+ YSFPGNVRELE+ I R+V L+ Sbjct: 325 RVLAQFFVEKFSKDLGKEVIKLSSYALDMLEKYSFPGNVRELENLIERSVALSTTNIILP 384 Query: 426 EVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARM 485 E + A H + VP + +L E T+ + I + + A + Sbjct: 385 ESLSLAVH--------KRRWIEGVPGRRFDLEEVTKGVALDEILADIER-----AYLKKA 431 Query: 486 LETDVANLHRLAKRLGL 502 LE+ N +R A+ LG+ Sbjct: 432 LESSGGNKNRAAELLGI 448 >UniRef50_C0YJU0 Acetoacetate metabolism regulatory protein AtoC n=8 Tax=cellular organisms RepID=C0YJU0_9FLAO Length = 394 Score = 247 bits (630), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 128/275 (46%), Positives = 179/275 (65%), Gaps = 3/275 (1%) Query: 156 ALSNALLIEQLESQN---MLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVL 212 ++ NAL+ E L+ +N + K+ QMIG SP + +++ IE VAASD VL Sbjct: 114 SVKNALVKETLKKENKNLQTENKTLKKKVSKKYQMIGTSPALQKIQDMIEKVAASDARVL 173 Query: 213 ISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRS 272 I+G G GKELVA AIH S RA P+V +NCAA+P + ESELFGHVKG+FTGAI ++ Sbjct: 174 ITGPNGAGKELVAHAIHNQSERARGPMVEVNCAAIPSELIESELFGHVKGSFTGAIKDKQ 233 Query: 273 GKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLR 332 GKFE A+ GT+FLDEIG++SL QAK+LR LQ + VG D+ ++VDVRV+AATN++++ Sbjct: 234 GKFEQANGGTIFLDEIGDMSLIAQAKVLRALQESKVSPVGSDKEIKVDVRVIAATNKNMQ 293 Query: 333 EEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGAR 392 +E+ G+FR DL+HRLSV + VPPL ER +D+ LL +F G + A Sbjct: 294 KEIEEGKFREDLYHRLSVIEIYVPPLDERKEDIKLLVEHFAGMIADEHGTAAKKFDDKAI 353 Query: 393 NLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEV 427 + L+ S+ GN+REL + + R ++L T S +V Sbjct: 354 DALKALSWTGNIRELRNVVERLIILGGNTVSESDV 388 >UniRef50_D2L1Y0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L1Y0_9DELT Length = 505 Score = 246 bits (629), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 133/252 (52%), Positives = 171/252 (67%), Gaps = 6/252 (2%) Query: 183 KQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYL 242 K+ ++G P + ++ VA S VLISGE+GTGKE+ A+ +H S RA P V + Sbjct: 147 KKFSIVGEHPLIRRVLGLARQVARSKATVLISGESGTGKEMFARYLHACSDRAEGPFVAI 206 Query: 243 NCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRV 302 NCAALPE + ESELFGH KG+FTGAI+ + GKFEMA GT+ LDEI E+ L LQAKLLRV Sbjct: 207 NCAALPEHLLESELFGHEKGSFTGAIARKLGKFEMASGGTILLDEISEMDLGLQAKLLRV 266 Query: 303 LQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERG 362 LQ + RVG ++VDVRVLA TNR L E V G+FR DL++RL+V PL +PPLR+RG Sbjct: 267 LQESEFDRVGGTETVQVDVRVLATTNRRLEEAVAEGKFRQDLYYRLNVIPLKLPPLRDRG 326 Query: 363 DDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATR 422 +DV LA +F ++ R GLS + SA A+ L Y +PGNVREL++ + RAV+LA Sbjct: 327 EDVPRLALFFVDKFRKAYGLSPLTFSADAKQWLMAYDWPGNVRELQNLMERAVLLA---- 382 Query: 423 SGDEVILEAQHF 434 GD I +A HF Sbjct: 383 -GDGPIRKA-HF 392 >UniRef50_Q086E2 Two component, sigma54 specific, transcriptional regulator, Fis family protein n=1 Tax=Shewanella frigidimarina NCIMB 400 RepID=Q086E2_SHEFN Length = 516 Score = 246 bits (629), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 119/233 (51%), Positives = 171/233 (73%) Query: 186 QMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCA 245 ++IG S ++Q+ +++E VA VL+ GETGTGK +VA+AIH S R PL+ ++C Sbjct: 208 EIIGSSKLLSQVFQKVEQVAPMHATVLLLGETGTGKGVVARAIHSRSSRKKRPLITVDCT 267 Query: 246 ALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQY 305 LP ++ ESELFG +GAFTG+ S + G+FE+AD GTLFLDEIGE+ L +QAKLLRV+Q Sbjct: 268 TLPVALIESELFGRERGAFTGSDSKQIGRFELADGGTLFLDEIGEMPLEMQAKLLRVIQD 327 Query: 306 GDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDV 365 G+ +R+G R ++VDVR++AATNR+L EEV G+FR DL++RL+VFP+++PPLR+R +D+ Sbjct: 328 GEFERLGSPRTIKVDVRIIAATNRNLIEEVRNGKFREDLYYRLNVFPITLPPLRQRKEDI 387 Query: 366 ILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLA 418 LL +F + + G +++ A N LQ + +PGNVRELE AI RAV+L+ Sbjct: 388 SLLVNHFLIKFNKKIGKQIDIITQDALNTLQQHQWPGNVRELESAIERAVILS 440 >UniRef50_B9M6T3 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Geobacter RepID=B9M6T3_GEOSF Length = 488 Score = 246 bits (629), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 130/318 (40%), Positives = 196/318 (61%), Gaps = 13/318 (4%) Query: 186 QMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCA 245 Q +G M + I VA +DL VLI GE+GTGKEL A+AIHE SPR P V +NCA Sbjct: 184 QFVGTGKAMLDVFANIRKVAPTDLTVLILGESGTGKELTAQAIHERSPRKDKPFVAINCA 243 Query: 246 ALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQY 305 A+P+++ E+ELFGH KGAFTGA + + GKFE ADNGT+FLDEIG++ LQAKLLR LQ Sbjct: 244 AIPDNLLEAELFGHEKGAFTGAHTTKKGKFEYADNGTIFLDEIGDMPSNLQAKLLRFLQD 303 Query: 306 GDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDV 365 ++RVG +V+VRV+AATNRDL + G+FR+DL++RL F +++PP+RERG+D Sbjct: 304 KIVERVGTVGGKKVNVRVIAATNRDLSVAIAEGKFRSDLYYRLDEFAINLPPVRERGEDT 363 Query: 366 ILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGD 425 ++LA YF + GL++ + A +++ +Y +PGNVRE+ + + R++V+A Sbjct: 364 LILAKYFLNKFSREGGLAK-TFTKEAIDVINNYDWPGNVREIINKVRRSIVMA------- 415 Query: 426 EVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARM 485 ++ ++ L +V +L A ++E I++ ++N + A++ Sbjct: 416 ----TGRYVTPADLMLDVAKVED-GAGNSDLSSAVAVLEKEKIKEVFKSCNYNISTAAKL 470 Query: 486 LETDVANLHRLAKRLGLK 503 L L+R K G++ Sbjct: 471 LGVSRPTLYRRMKIYGIE 488 >UniRef50_B8FJT8 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=B8FJT8_DESAA Length = 464 Score = 246 bits (629), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 141/351 (40%), Positives = 207/351 (58%), Gaps = 10/351 (2%) Query: 156 ALSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISG 215 ++S A+ ++LE +N + + + +G SP + ++ + IE VA +D VLI+G Sbjct: 118 SVSTAIKFKRLERENTILKKQLK-KKYRFENFVGDSPQIQRVFELIEKVADTDSTVLITG 176 Query: 216 ETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKF 275 E+GTGKEL+A+AIH SPR +P+V +NC A+PE + ESELFGH KGAFTGA R G+F Sbjct: 177 ESGTGKELIARAIHYNSPRRDDPMVIINCGAIPEELLESELFGHEKGAFTGAHKTRIGRF 236 Query: 276 EMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEV 335 E+A+ GT+FLDEIG++S LQ KLLRV+Q +R+G R + VD+R+LAATN+DL E V Sbjct: 237 EVANGGTIFLDEIGDMSPNLQVKLLRVIQEQAFERIGSTRTMHVDIRILAATNKDLMEAV 296 Query: 336 LAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLL 395 FR DL++RL+V P+ VPPLR+R D+ LL +F + + +S A N L Sbjct: 297 EKKEFREDLYYRLNVIPIEVPPLRDRKSDIPLLIDFFINKLAAEKERPVKRISQAAMNAL 356 Query: 396 QHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVA-AVPVVKQ 454 + +PGNVRELE+ + R ++L+ SGD + E + PE +P Sbjct: 357 MGHHWPGNVRELENVVERVLILS----SGDTIDKEDLPATILGLDSKEPEAGLKLPSGGI 412 Query: 455 NLREATEAFQRETIRQALAQNHHNWAAC--ARMLETDVANLHRLAKRLGLK 503 A E +++ I QAL + NW A++L + L KR ++ Sbjct: 413 RFDHAVEEYEKNLIVQALEEA--NWVKTQAAKLLHINRTTLVEKMKRKNIR 461 >UniRef50_Q3A356 Two component, sigma54 specific, transcriptional regulator, Fis family n=11 Tax=Desulfuromonadales RepID=Q3A356_PELCD Length = 471 Score = 246 bits (628), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 147/377 (38%), Positives = 216/377 (57%), Gaps = 12/377 (3%) Query: 130 LDGMQPDQFDVFSD----EELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQT 185 ++ M+ FD + E+L++I A A + L+ E L + L G + Sbjct: 103 VEAMKEGAFDYITKPLHFEKLQVIIAKAVE--KSRLVAENLYLRQQLRGK------YRFD 154 Query: 186 QMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCA 245 +IG S M + +E V +D +LI GE+GTGKELVAKAIH R P V +NC Sbjct: 155 NIIGNSLPMQYVFSRMEKVLNTDSTILILGESGTGKELVAKAIHYNGHRREKPFVAINCG 214 Query: 246 ALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQY 305 A+P + ESELFGHV+GAFTGA+++++GKF+ A GT+FLDEIG + L LQ KLLRVLQ Sbjct: 215 AIPAELLESELFGHVRGAFTGAVADKTGKFQQAHQGTIFLDEIGTMPLHLQMKLLRVLQE 274 Query: 306 GDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDV 365 ++++VG + +++DVRV++ATN +L EEV GRFRADL++RL+V P+++PPLRER +D+ Sbjct: 275 QEVEKVGSSKKIKLDVRVISATNCNLEEEVEQGRFRADLYYRLNVIPIALPPLRERREDI 334 Query: 366 ILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGD 425 LLA YF ++ + ++ GA N L++Y +PGNVRELE+ I R V L + G Sbjct: 335 ALLARYFLQKTCTEMNQPLISITPGAMNCLENYHWPGNVRELENVIERTVTLTDSIAIGK 394 Query: 426 EVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARM 485 + + E P + ++ E +R I+ A+ + A A + Sbjct: 395 SDLPANISGSCCEDEDPQISCPRLTESGMDMPEVIAGIERCLIKSAMGLSGGVKARAASL 454 Query: 486 LETDVANLHRLAKRLGL 502 L L KRLG+ Sbjct: 455 LNIKRTTLVEKIKRLGI 471 >UniRef50_B8IYK1 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Desulfovibrio RepID=B8IYK1_DESDA Length = 505 Score = 246 bits (628), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 131/257 (50%), Positives = 171/257 (66%), Gaps = 6/257 (2%) Query: 186 QMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCA 245 +++G P M ++ VA S VLI+GE+GTGKE+ A+ +H S R V +NCA Sbjct: 148 RIVGKHPAMGRVLHLARQVAGSRATVLITGESGTGKEMFARYLHAMSKRGDGAFVAVNCA 207 Query: 246 ALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQY 305 ALPE + ESELFGH KGAFTGAI+ + GKFE+AD GTL LDEI E+ L+LQAKLLRVLQ Sbjct: 208 ALPEHLLESELFGHEKGAFTGAIARKPGKFELADGGTLLLDEISEMDLSLQAKLLRVLQE 267 Query: 306 GDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDV 365 G++ RVG L+V+VRVLA TNR+L + V G+FR DL+ RL+V PL +P LRERGDDV Sbjct: 268 GEVDRVGGTEPLKVNVRVLATTNRNLEDWVKQGKFRQDLYFRLNVIPLRLPSLRERGDDV 327 Query: 366 ILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGD 425 + LAG+F + L+ VLS A + L+ Y FPGNVREL++ + RAV+LA Sbjct: 328 LELAGFFMDMYIREYQLASTVLSQSAIDWLREYDFPGNVRELQNLMERAVLLANGRP--- 384 Query: 426 EVILEAQHFAFPEVTLP 442 +E +HF + P Sbjct: 385 ---VEPRHFLLEDDDWP 398 >UniRef50_A9F816 Protein kinase n=12 Tax=Bacteria RepID=A9F816_SORC5 Length = 1673 Score = 246 bits (627), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 167/425 (39%), Positives = 230/425 (54%), Gaps = 46/425 (10%) Query: 107 SLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALA---AGALSNALLI 163 L++ + V +P+ A ++GA+ LD Q F++ + L+ A A A AL N L+ Sbjct: 1262 GLRLRSIVCVPIRAHGAVLGAVYLDNRF--QRGKFAEGDADLLGAFADQIAVALHNGRLM 1319 Query: 164 EQLESQN------------MLPGDATPFEAVKQ-------------TQMIGLSPGMTQLK 198 +L + ++ A E + ++ G S M + Sbjct: 1320 AELRDRTRALEEEQRRVAELMRSQADEIERLSHELERTRADARRDFPEIAGRSAPMRAVL 1379 Query: 199 KEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFG 258 E VA SD+ V ++GE+GTGKELVA+AIH PR P V +NCAALPE++ ESELFG Sbjct: 1380 ALCERVAESDVTVTVTGESGTGKELVARAIHAGGPRRDGPFVAVNCAALPEALLESELFG 1439 Query: 259 HVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLR 318 HVKGAFTGA+ + G F A GTLFLDE+GE+ L +QAKLLR LQ I+ VG DR + Sbjct: 1440 HVKGAFTGAVRDHGGLFLSARGGTLFLDELGEVPLGVQAKLLRALQERSIRPVGSDRSVS 1499 Query: 319 V-DVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCR 377 V DVRV+ ATNRDLR+EV GRFR DL++R+SV + +PPLR+R +D+ +A E+ Sbjct: 1500 VADVRVVCATNRDLRDEVARGRFREDLYYRVSVIEIRLPPLRDRPEDIPAIAQAIVEKLA 1559 Query: 378 LRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFP 437 RQG LS GA L Y +PGNVR+LE+ + RA VL+ G E+ Sbjct: 1560 ARQGRPAFRLSRGALRRLSSYGWPGNVRQLENVLSRACVLS----PGPEI-------GAA 1608 Query: 438 EVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLA 497 ++ LP AA P + R + + E IR AL + N + +R L L+R Sbjct: 1609 DIQLP----AAAPAPRGRSRAEHQGAEEERIRAALDLSRWNVSEVSRSLGIPRMTLYRKL 1664 Query: 498 KRLGL 502 R GL Sbjct: 1665 ARYGL 1669 >UniRef50_Q3A7M8 Putative two component response regulator n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q3A7M8_PELCD Length = 492 Score = 246 bits (627), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 180/451 (39%), Positives = 241/451 (53%), Gaps = 53/451 (11%) Query: 85 VVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDE 144 V RF AD LP G +P E L A AG+ L+G G QPD + + Sbjct: 51 VGRF-ADQLLP----GSVPSLEDLARDAVS-----AGRALLGIRVRLGAQPDLWSI-DVR 99 Query: 145 ELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIV 204 L L A A + A++ QLE + G P V M+G SP + ++ ++I + Sbjct: 100 PLGLDEAFRAHEV--AIVFRQLE----VSGKEAP---VSLYGMVGNSPAIREVFRKIALF 150 Query: 205 AASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAF 264 A SD V+I+GETGTGKELVA+A+H+ S R P V +NC+A+ + + ESELFGH KGAF Sbjct: 151 APSDAAVVITGETGTGKELVARALHDQSLRPEGPFVAVNCSAISDELLESELFGHEKGAF 210 Query: 265 TGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVL 324 TGA+ + G+FE AD GTLFLDE G++ L QAKLLRVL+ G I+RVG +R RVDVR++ Sbjct: 211 TGALRSHRGRFERADGGTLFLDEAGDMPLNTQAKLLRVLEEGMIERVGAERQQRVDVRIV 270 Query: 325 AATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSR 384 AATN L + V GRFRADL+HR+SV + +PPLRER +D+ L +F + + G Sbjct: 271 AATNVPLEQAVGMGRFRADLYHRISVLRIHLPPLRERAEDIPHLVEHFLKLFARKYGRRV 330 Query: 385 VVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARA----TRSGDEVILEAQHFA----- 435 L+ A NLL+ Y +PGN+REL + + R + RA R+ E I E Q F Sbjct: 331 YRLTPEAVNLLRSYLWPGNIRELRNVLERVFIENRADVIGARAFGEWIRERQDFLVESRG 390 Query: 436 --------FPEVTLPTPEV-------AAVPVVKQNLREATEAFQRET---------IRQA 471 P + LP EV P V + A E +R T + +A Sbjct: 391 QTVSERDFVPAMVLPHREVRDEAAGSGPDPTVLEAEFYAGEERRRSTRPVNLTVEEVARA 450 Query: 472 LAQNHHNWAACARMLETDVANLHRLAKRLGL 502 N A AR L A L+R K+LGL Sbjct: 451 YCDAGGNLADAARRLGVHRATLYRYMKKLGL 481 >UniRef50_D0LP00 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Deltaproteobacteria RepID=D0LP00_HALO1 Length = 336 Score = 245 bits (626), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 152/338 (44%), Positives = 198/338 (58%), Gaps = 12/338 (3%) Query: 169 QNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAI 228 +N+ P + +IG SP M +L + V SD VL+ GE GTGKELVA+A+ Sbjct: 3 ENVHPDQKNTHQRQGYADIIGASPPMQELFSVLARVVQSDTTVLVQGENGTGKELVARAV 62 Query: 229 HEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEI 288 H SPRA V NC+A +S+ +SELFGHVKGAFTGA+ ++ G FE+AD GT FLDEI Sbjct: 63 HYQSPRAAQRFVVTNCSAFNDSLLDSELFGHVKGAFTGAVVDKRGLFEVADRGTFFLDEI 122 Query: 289 GELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRL 348 G++S ALQ K+LRVLQ G VG RVDVR++AATNRDLR V G FR DL++R+ Sbjct: 123 GDMSPALQVKVLRVLQEGTFTPVGSTETRRVDVRIIAATNRDLRAMVAEGSFREDLYYRV 182 Query: 349 SVFPLSVPPLRER-GDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVREL 407 +V L +PPLRER GD +L A + R G + LS+ ++ Y++PGNVREL Sbjct: 183 NVINLHIPPLRERPGDLELLAAHFLAAHAR---GGRQPALSSACLARMRAYTWPGNVREL 239 Query: 408 EHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLP--TPEVAAVPVVKQNLREATEAFQR 465 E+ I R VVLA DE I P V P + VA +P ++ L EA A + Sbjct: 240 ENEIARLVVLA----DDDEPI--PASLLSPRVRAPQESAPVAELPAEQRTLPEALRALEE 293 Query: 466 ETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 IR+AL +N N AR L+ NL RL + L+ Sbjct: 294 RMIREALERNEWNKTRTARALDISRRNLIRLVAKYELE 331 >UniRef50_C9RM62 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RM62_FIBSS Length = 484 Score = 245 bits (626), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 137/312 (43%), Positives = 190/312 (60%), Gaps = 18/312 (5%) Query: 198 KKEIEIVAASD------LNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESV 251 K ++++A +D L V+I GETGTGKE++A+ IH+ SPRA P + +NC A+PE + Sbjct: 179 KAMVDVIAMADKLSPLPLPVIIRGETGTGKEVMARYIHKHSPRAEKPFIAVNCGAIPEHL 238 Query: 252 AESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRV 311 ES +FGH KG+FTGAI N+ G FE AD GT+FLDEIGEL L +Q KLLRVLQ I RV Sbjct: 239 MESLMFGHAKGSFTGAIENKKGFFEEADGGTIFLDEIGELPLNMQVKLLRVLQEKHITRV 298 Query: 312 GDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGY 371 GD+R + V+VRV++AT+ DL E V RFR DL+ R+ V PL +PPLR+RG DV+LLA Sbjct: 299 GDNREIPVNVRVISATHVDLEEAVREKRFREDLYFRIQVLPLELPPLRDRGQDVVLLAEN 358 Query: 372 FCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEA 431 F ++ G + LS A L Y +PGNVRELE+ + + +V A +++ Sbjct: 359 FIQRYGAEYGRGKFHLSRNAEKALLGYHWPGNVRELENRVQKGLVQAVHG------VIQP 412 Query: 432 QHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVA 491 + ++ E + L+EA EA +RE I +AL + N + +L D Sbjct: 413 KDLGLDDMQGQAKESP------RTLKEAREAVEREVISRALKDTNANLTLASTILGIDRK 466 Query: 492 NLHRLAKRLGLK 503 L + +RLGLK Sbjct: 467 VLREIMERLGLK 478 >UniRef50_D0LMB6 Sigma 54 interacting domain protein n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LMB6_HALO1 Length = 507 Score = 245 bits (626), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 157/375 (41%), Positives = 216/375 (57%), Gaps = 14/375 (3%) Query: 60 AKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPD---PYDGLIPGQESLKVHACVGL 116 ++ V R AL P + + V F DS+ D PYDG++ H+C+ + Sbjct: 66 SEQVRAHRLALSKFPNIRRVLEVRRPVAF-EDSDHADHGDPYDGVLDLPHG---HSCMVI 121 Query: 117 PLFAGQNLIGALTLDGMQPDQFDV----FSDEELRLIAALAAGALSNALL---IEQLESQ 169 PL A + +G +T+D ++ + +D +D +L++ A A+L +QL Sbjct: 122 PLRADEADMGIITIDRLRCETYDARAVRLADVYGQLVSLALWFANREAILRRNNQQLSEH 181 Query: 170 NMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIH 229 N L + + + G S M +L + + VA S+ VL+ GETGTGKEL+A+AIH Sbjct: 182 NRLLLEESGATWACRRLEAGASAQMHELVAQAKKVAVSNAPVLVLGETGTGKELLAQAIH 241 Query: 230 EASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIG 289 E S RA P + LNCAA+PE++ ESELFGHV+GAF+GA S R G+F A+ GTL LDEIG Sbjct: 242 EWSARASGPFIKLNCAAIPENLVESELFGHVRGAFSGAESARRGRFVTANRGTLLLDEIG 301 Query: 290 ELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLS 349 EL L QAKLLRVLQ G ++ VG D RVDVR++AATN DL V AG FR DL++RL+ Sbjct: 302 ELPLPAQAKLLRVLQEGVLEPVGSDDSYRVDVRIVAATNVDLVAAVDAGWFRRDLYYRLA 361 Query: 350 VFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEH 409 FPL VPPLRER D+ +A + G LSA A L+ +PGNVREL + Sbjct: 362 TFPLQVPPLRERRADIAPIARDVLRELHASTGRGPWTLSAPAVEALERNGWPGNVRELRN 421 Query: 410 AIHRAVVLARATRSG 424 + RA ++ +A G Sbjct: 422 VLERATIIVQAGEIG 436 >UniRef50_C8R1J5 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R1J5_9DELT Length = 467 Score = 245 bits (626), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 149/331 (45%), Positives = 201/331 (60%), Gaps = 20/331 (6%) Query: 187 MIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAA 246 +IG SP M ++ I VA + NVLI GE+GTGKELVA+AIH SP + + V + C+A Sbjct: 141 IIGGSPEMRKIYDIISRVAPTRANVLIQGESGTGKELVARAIHRLSPASGHEFVPIVCSA 200 Query: 247 LPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYG 306 +PES+ ESE+FGH KGAFTGA S+R+G FE A+ GT FLDEIGEL+ +Q KLLRVLQ Sbjct: 201 IPESLFESEVFGHTKGAFTGAASSRAGLFEQANQGTAFLDEIGELTPIIQTKLLRVLQER 260 Query: 307 DIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVI 366 +I+RVG R+ +RV++ATN+DL EEV+AGRFR DLF+RL+V P+ VPPLRER DV Sbjct: 261 EIKRVGATESTRIQIRVISATNKDLEEEVMAGRFREDLFYRLAVVPIRVPPLRERKGDVP 320 Query: 367 LLAGYF-CEQCRL-RQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSG 424 LL +F + RL + + R+ S+ A +L Y FPGNVRELE+ I R V + + Sbjct: 321 LLVDHFLAKYARLFNKDIHRI--SSYAMEVLLDYDFPGNVRELENIIERGVAMENSQIIL 378 Query: 425 DEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAF-----------QRETIRQALA 473 E + + H E P P V +Q + A E F +RE I AL Sbjct: 379 PESLTLSGHRRSRE---PEPAGGTVDDKRQEI--AEEVFSRGLEPTLADLEREMIVNALE 433 Query: 474 QNHHNWAACARMLETDVANLHRLAKRLGLKD 504 + ++ A +L T +L K+ G+ + Sbjct: 434 KAGNSKTRAAELLRTSFRSLRYKIKKYGIDN 464 >UniRef50_B8FEY3 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Deltaproteobacteria RepID=B8FEY3_DESAA Length = 460 Score = 245 bits (626), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 140/319 (43%), Positives = 196/319 (61%), Gaps = 7/319 (2%) Query: 186 QMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCA 245 +IG SP M + I VA ++ VLI GE+GTGKE+VAK+IH S R P V +NCA Sbjct: 141 NIIGKSPAMVNIFDTIVKVAPTNATVLIQGESGTGKEMVAKSIHFNSHRKDAPWVAVNCA 200 Query: 246 ALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQY 305 AL ES+ ESELFGH KGAFTGA + + G+FE+AD GTLFLDEIGE+S +LQ KLLRVLQ Sbjct: 201 ALAESILESELFGHEKGAFTGAAAMKKGRFELADGGTLFLDEIGEISSSLQVKLLRVLQE 260 Query: 306 GDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDV 365 +RVG + + VD+R++AATNRDL++EV FR DLF+RL+V P+ +PPLRER D+ Sbjct: 261 KTFERVGGVKPIEVDIRLIAATNRDLKKEVENSAFREDLFYRLNVLPIQLPPLRERQKDI 320 Query: 366 ILLAGYFCEQ-CRLRQGLSRV-VLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRS 423 LL +F ++ G SRV + L Q Y++PGNVRELE+ I RA++L + Sbjct: 321 PLLVDHFLQKYASGPSGESRVRKVHPDVHRLFQEYAWPGNVRELENVIERAIILCNS--- 377 Query: 424 GDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACA 483 D + + T + +P V L E ++ I++A+ + + + A Sbjct: 378 -DAISVNDLPRELTRSVSNTLHMEGIP-VDATLYETLSMVEQAMIKRAMLMSDNVQSHAA 435 Query: 484 RMLETDVANLHRLAKRLGL 502 ++L + L++ K+ GL Sbjct: 436 QILGIGKSGLNQKIKKFGL 454 >UniRef50_A3ER00 Transcriptional regulator, NifA, Fis Family n=3 Tax=Leptospirillum RepID=A3ER00_9BACT Length = 553 Score = 245 bits (625), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 156/387 (40%), Positives = 226/387 (58%), Gaps = 12/387 (3%) Query: 43 LLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYD--G 100 LL DS + GL+++ + + EG A+ + GD + P S P + G Sbjct: 51 LLENDSDELRTEIAHGLSEEEIRKGRFKEGEGITGAVLKTGDPIVVPDISREPRFLNRTG 110 Query: 101 LIPGQESLKVHACVGLPLFAGQNLIGALTLD-GMQPDQFDVFSDEELRLIAALAAGALSN 159 + S A + +PL +G L+ D ++P ++ DEELR++ +++ Sbjct: 111 SRSERASRGKLAFLAVPLTFQARKVGVLSADCTIEPGSGNL--DEELRVLTTISSIIAQA 168 Query: 160 ALLIEQ-LESQNMLPGDATPFEAVKQTQ-----MIGLSPGMTQLKKEIEIVAASDLNVLI 213 +L +Q +E + L A E + + IG S M Q+ + + +VA S VLI Sbjct: 169 VILRKQFVEERKKLEERALRLEHHLKDRYSIEGWIGRSRIMQQISESVHLVAKSRATVLI 228 Query: 214 SGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSG 273 GE+GTGKE+VAKAIH SPR P V +NCAA+PES+ ESELFGH KGAFTGA +R G Sbjct: 229 MGESGTGKEVVAKAIHFNSPRNRRPFVQINCAAIPESLLESELFGHEKGAFTGAHVSRPG 288 Query: 274 KFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLRE 333 KFE A GTLFLDE+GE+S A+Q KLLRVLQ ++RVG + + VDVR++AATNR+L E Sbjct: 289 KFEQAHEGTLFLDEVGEISPAVQVKLLRVLQERVVERVGGTKTIPVDVRIIAATNRNLEE 348 Query: 334 EVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARN 393 + +FR DL++RL+V P+ +PPLR+R +D+ LL +F + G S + Sbjct: 349 AIRKNQFREDLYYRLNVVPIYLPPLRQRKEDIPLLVNHFLGRFNQENGRSMTISPEAISA 408 Query: 394 LLQHYSFPGNVRELEHAIHRAVVLARA 420 L++H +PGNVRELE+ + R VV+ +A Sbjct: 409 LIEH-DWPGNVRELENTMERLVVMTQA 434 >UniRef50_C7LR14 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LR14_DESBD Length = 476 Score = 245 bits (625), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 143/313 (45%), Positives = 191/313 (61%), Gaps = 13/313 (4%) Query: 187 MIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAA 246 M+G S M ++ IE A SD V I GE+GTGKELVA+AIH+ PR+ P V NCAA Sbjct: 165 MVGHSAQMRRVFHLIEKAAQSDAPVFIYGESGTGKELVARAIHDLGPRSDQPYVQFNCAA 224 Query: 247 LPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYG 306 L E++ ESELFGHVKGAFTGA +R G+FE A G +FLDEIG+L + +Q KLLRVL+ Sbjct: 225 LNEALLESELFGHVKGAFTGAFRHRQGRFEAAHGGDIFLDEIGDLPMPVQVKLLRVLETK 284 Query: 307 DIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVI 366 +RVGD+R L VDVR++ ATN+ L E + G+FR DLF+R++V P+ +P LRER +D+ Sbjct: 285 TFERVGDNRQLSVDVRIITATNKVLPELISQGQFREDLFYRINVIPVHLPSLRERKEDIP 344 Query: 367 LLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDE 426 LLA YF ++ R++ LS L YS+PGNVREL+ ++ A VLA D Sbjct: 345 LLADYFIQRLRMKSDKDIKGLSPQTLRLFMDYSWPGNVRELKSSLEYAFVLA------DH 398 Query: 427 VILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARML 486 +E +H V V A PV + QR+ + QAL Q N + AR+L Sbjct: 399 GHIEPEHLPHNVV------VTAPPVAEPRYGNPGHDSQRQQLVQALHQAGGNKSEAARIL 452 Query: 487 ETD-VANLHRLAK 498 + V L+R+ K Sbjct: 453 GINRVTVLNRMRK 465 >UniRef50_Q1DDD5 Sigma-54 dependent DNA-binding response regulator Nla19 n=6 Tax=Myxococcales RepID=Q1DDD5_MYXXD Length = 482 Score = 245 bits (625), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 154/335 (45%), Positives = 198/335 (59%), Gaps = 25/335 (7%) Query: 185 TQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNC 244 + ++G S M +L + VA SD VLI GE+GTGKELVA+A+H S R V +NC Sbjct: 149 SALVGRSAAMRELTTRLMRVAQSDATVLIQGESGTGKELVARALHAHSRRKARSFVPVNC 208 Query: 245 AALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQ 304 AA+ ES+ ESELFGH KGAFTGA+ +R G FE AD GTLF+DE+ E S Q+KLLR LQ Sbjct: 209 AAISESLLESELFGHAKGAFTGAVKSRRGLFEEADGGTLFIDEVTETSPTFQSKLLRALQ 268 Query: 305 YGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDD 364 G+++RVG+ LRVDVR++AATNRD+ EV RFR DL++RL+V L VPPLRER +D Sbjct: 269 EGEVRRVGESTALRVDVRIVAATNRDIELEVRDKRFRQDLYYRLNVVALRVPPLRERLED 328 Query: 365 VILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSG 424 V LA +F E+ R + LSA A + L Y FPGNVRELE+ + +A LA G Sbjct: 329 VPALAEHFLERANARSPNPK-RLSAAAVSHLMSYGFPGNVRELENLVEQAAALA----EG 383 Query: 425 DEVILEAQHFAFPEVTLP--TPEVA--------------AVPVVKQNLREATEAFQRETI 468 DE++ E +T TP VA A P + Q + EA +R I Sbjct: 384 DELLPEDFPVRQGRMTPAHGTPSVAFLDGQGGALGRNASAGPTLAQVVEEA----ERHAI 439 Query: 469 RQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 QAL ++ + A A L L R KRL L+ Sbjct: 440 TQALERHGVDLARVADELGVSSTTLWRKMKRLNLR 474 >UniRef50_C8W392 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W392_DESAS Length = 459 Score = 245 bits (625), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 133/316 (42%), Positives = 198/316 (62%), Gaps = 2/316 (0%) Query: 188 IGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAAL 247 IG S M + K I V SD+ VLI GE+GTGKE+VA+ IH S R+ P + +NCA + Sbjct: 144 IGQSRHMQDVFKTIGKVVDSDITVLIQGESGTGKEVVARTIHSNSRRSSRPFIKINCATI 203 Query: 248 PESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGD 307 PE + ESELFGH KG+FTGA+S ++GKFE+A NG +FLDEIGEL L QAKLLRVLQ + Sbjct: 204 PEQLMESELFGHEKGSFTGAVSQKAGKFEIAHNGIVFLDEIGELPLHTQAKLLRVLQEKE 263 Query: 308 IQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVIL 367 +RVG + + VDVR+LAATNR+L + V G+FR DL++RL+V + +PPLRER +D+ L Sbjct: 264 FERVGGTKSIEVDVRILAATNRNLEDMVQEGKFREDLYYRLNVVNVKLPPLRERKEDISL 323 Query: 368 LAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLAR-ATRSGDE 426 L YF ++ + + +S A + Y++PGNVRE+++ +AVV+AR + D+ Sbjct: 324 LINYFVKKFARKYNKNISGISQEAMIFAEKYAWPGNVREIKNVCEQAVVMARNSVLMLDD 383 Query: 427 VILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARML 486 + L F E +++ K++L++ +++ I ++L +N+ N A+ L Sbjct: 384 MPLIGNGNGFLEFK-NNAKISLDTNDKRSLKDIVAEVEKQVILKSLNENNWNRQNTAKAL 442 Query: 487 ETDVANLHRLAKRLGL 502 + +L+ K L Sbjct: 443 GLNRRSLYAKMKEYDL 458 >UniRef50_A6CG13 Ornithine decarboxylase inhibitor-putative sigma54 transciptional regulator (Fragment) n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CG13_9PLAN Length = 604 Score = 245 bits (625), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 135/274 (49%), Positives = 174/274 (63%), Gaps = 15/274 (5%) Query: 144 EELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEI 203 E+LRL LA N L EQLE +++++G SP MT +K +I Sbjct: 338 EKLRLSDGLARMEGENKALREQLE---------------LESELVGKSPSMTAMKAQILR 382 Query: 204 VAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGA 263 +A +D +VLI GE+G GKELVA+AIH S R P V +NCAAL E + ESELFGH KGA Sbjct: 383 IAPTDASVLIRGESGVGKELVARAIHFNSQRKKQPFVCMNCAALSEGLLESELFGHEKGA 442 Query: 264 FTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRV 323 FTGA + GKFE A GTLFLDE+GE+SL +QAK LRVL+ +RVG + VDVRV Sbjct: 443 FTGATGQKPGKFEQAHKGTLFLDEVGEMSLGVQAKFLRVLEGHSFERVGGSVSINVDVRV 502 Query: 324 LAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLS 383 +AATNRD+ + V G FR DL+ RL V +SV PLR R DD++LLA YF + ++ G Sbjct: 503 VAATNRDMEKAVAKGIFRQDLYFRLHVVEVSVDPLRVRADDILLLADYFLNRFVVKTGRP 562 Query: 384 RVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVL 417 + A+ LL+ Y +PGNVREL++ I RA +L Sbjct: 563 IRGFTEEAKELLEAYHWPGNVRELQNTIERAFIL 596 >UniRef50_C1SPF3 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SPF3_9BACT Length = 451 Score = 244 bits (624), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 131/327 (40%), Positives = 198/327 (60%), Gaps = 12/327 (3%) Query: 180 EAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPL 239 + +K+ +IG S + L+K+IE +A ++ V+I+GE GTGKE VA+ IH S R+ N Sbjct: 132 DQLKKYDLIGTSKPLLDLRKKIEKIAPTNAWVMITGENGTGKEHVARLIHMLSKRSRNSF 191 Query: 240 VYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKL 299 V +NCAA+P + ESE+FGH KGAFTGA + GKFE DNGT+FLDEIG++ ++ QAKL Sbjct: 192 VEINCAAIPSELLESEMFGHEKGAFTGAHMAKKGKFEEGDNGTVFLDEIGDMEMSAQAKL 251 Query: 300 LRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLR 359 LRVL+ RVG + + D R++ ATN++L +E+ G FR DL++R++V PL VPPLR Sbjct: 252 LRVLENNTFSRVGGNASVSSDFRLITATNKELEDEISDGNFREDLYYRINVVPLVVPPLR 311 Query: 360 ERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLAR 419 ER DD+ LL +F ++ G+ + +L + +PGNVR+L++ + R VVL+ Sbjct: 312 ERHDDIPLLVNHFIKEACSFNGIELKKVDEELMHLFVQFEWPGNVRQLKNLVERMVVLSE 371 Query: 420 -ATRSGDEV--ILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNH 476 + S D+ ++ +HF P+ + + L+ A E F++ I L N Sbjct: 372 DSVMSLDDAPDFIQGKHF---------PQKSYDVEYEYPLKHAKENFEKHYILNILQNND 422 Query: 477 HNWAACARMLETDVANLHRLAKRLGLK 503 N + AR+LE + LHR K G++ Sbjct: 423 WNISRSARILEIERTYLHRKIKAYGIE 449 >UniRef50_Q1MPA8 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=6 Tax=Desulfovibrionaceae RepID=Q1MPA8_LAWIP Length = 492 Score = 244 bits (624), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 142/335 (42%), Positives = 203/335 (60%), Gaps = 11/335 (3%) Query: 132 GMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLS 191 G Q + S E+++ + L + + L S++ L G P + +IG + Sbjct: 96 GAQDYWLEPLSTEKIKTV-------LQKSYKLTPLPSKSTLDGHK-PEDLSSAPTIIGSN 147 Query: 192 PGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESV 251 P + ++ + VA S +VLISGE+GTGKE+ A+ +H S R+ P + +NCAALPE + Sbjct: 148 PAIRRVLALAKQVAPSKASVLISGESGTGKEMFARTLHAWSNRSKGPFIAVNCAALPEHL 207 Query: 252 AESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRV 311 ESELFGH KG+FTGAI+ + GKFE+A GT+ LDEI E+ LALQ+KLLRVLQ G+I RV Sbjct: 208 LESELFGHEKGSFTGAIARKLGKFELASGGTILLDEISEMDLALQSKLLRVLQEGEIDRV 267 Query: 312 GDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGY 371 G ++VDVRVLA TNRD+ + V G+FR DLF RL+V PL +P L ERGDD++ LA + Sbjct: 268 GGTETIKVDVRVLATTNRDMEKWVDEGKFRQDLFFRLNVIPLRLPSLAERGDDILELANF 327 Query: 372 FCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATR-SGDEVILE 430 F L LS A L+++++PGNVREL++ + RAV+LA + + +LE Sbjct: 328 FINMYTKEYHLKPTKLSQEATTWLKNHNWPGNVRELQNLMERAVLLAGGGLITPNHFLLE 387 Query: 431 AQHFA-FPEVTLPTPEVAAVPVVKQNLREATEAFQ 464 + + F EV L + +P V + T+A Q Sbjct: 388 TEEWPLFDEVPLEQQTESIIPEV-ITISNTTQALQ 421 >UniRef50_A1VHZ7 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Desulfovibrio vulgaris RepID=A1VHZ7_DESVV Length = 476 Score = 244 bits (624), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 134/317 (42%), Positives = 189/317 (59%), Gaps = 10/317 (3%) Query: 187 MIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAA 246 ++G P M + + + VA + VL++GE+GTGKELVA+AIH PR V +NC A Sbjct: 169 IVGRCPSMRAVFETVAKVAVTGAPVLVTGESGTGKELVARAIHALGPRCTRTFVAINCGA 228 Query: 247 LPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYG 306 +P+++ E+E FG+ KGAFTGA GK E AD GTLFLDEIGEL LQ KLLR LQ Sbjct: 229 IPDNLLEAEFFGYEKGAFTGATQRVQGKVEYADGGTLFLDEIGELPANLQVKLLRFLQEK 288 Query: 307 DIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVI 366 IQRVG + + VD R++AATNRD++ E+ +GRFR DL++R+ V P+++PPLR RGDD++ Sbjct: 289 VIQRVGGRKDIAVDARIVAATNRDIQTEIASGRFREDLYYRIGVVPVALPPLRARGDDIL 348 Query: 367 LLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDE 426 LLA +F E + V S A + Y++PGNVRELE+ + RAV+ A R Sbjct: 349 LLARHFLESSAGEGTGNIVGFSPAAEQAMLRYAWPGNVRELENKVRRAVIFASGRR---- 404 Query: 427 VILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARML 486 + F E TP AA P + +LREA A +R+ + AL + N + + Sbjct: 405 --IMPDDLGFDE----TPAKAAAPRPEGSLREARNALERDMVLSALDKCGGNIVQASLAI 458 Query: 487 ETDVANLHRLAKRLGLK 503 + L ++ G++ Sbjct: 459 GVSRPTFYDLLRKHGIE 475 >UniRef50_D0LFQ8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LFQ8_HALO1 Length = 515 Score = 244 bits (624), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 142/334 (42%), Positives = 203/334 (60%), Gaps = 23/334 (6%) Query: 186 QMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCA 245 +IG S + ++ ++E VA ++ VL+ GETGTGKELVA AIH S R P V +NCA Sbjct: 157 NIIGDSAALGEVLSKVEQVAPTNSTVLLRGETGTGKELVAHAIHINSSRENQPFVRVNCA 216 Query: 246 ALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQY 305 AL V ESELFGH KGAFTGA++ R G+FE+AD GTLFLDE G+L + +Q KLLR LQ Sbjct: 217 ALAPGVLESELFGHEKGAFTGAVAQRPGRFELADGGTLFLDECGDLPMEVQIKLLRALQE 276 Query: 306 GDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDV 365 + +RVG + ++VDVRV++ATNRDL + AG FR DL++RL+VFP+ +PPLR+R +D+ Sbjct: 277 REFERVGGTQTIKVDVRVISATNRDLEAMIEAGSFREDLYYRLNVFPIHLPPLRDRLEDL 336 Query: 366 ILLAGYFCEQCRLRQGLSRVV-LSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSG 424 L +F + R G++R + A + L+ Y++PGNVRELE+ I RA++LAR Sbjct: 337 PALVAHFIAKF-ARSGMTRTPGVRGAALDKLRSYTWPGNVRELENIIERAMILARGRE-- 393 Query: 425 DEVILEAQHFAFPEVTLPTPEVAAVPVV---------------KQNLREATEAFQRETIR 469 L+A H F V+ P V + L E +R I Sbjct: 394 ----LDADHLDFGRRAQNATPVSGTPSVISETASHSPPLIGDESKPLAERLLDSERREII 449 Query: 470 QALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 A+ ++++N A+ ARML + + L+ ++ GL+ Sbjct: 450 AAVEKSNNNIASAARMLGINRSTLYYRMRKHGLE 483 >UniRef50_B5YI45 Transcriptional activator n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YI45_THEYD Length = 424 Score = 244 bits (624), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 142/357 (39%), Positives = 214/357 (59%), Gaps = 23/357 (6%) Query: 149 IAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASD 208 + A+ GA+ + +E+ L P +Q +++ S M ++ + ++ +A +D Sbjct: 89 VRAMKLGAVDYIMKPFSMETLKSLVSRLIP----EQDEIVAESREMRRILEIVKEIARTD 144 Query: 209 LNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAI 268 + VL++GE+G GKE++A+ IH+ SPR+ P V +NCAA+ E++ E+ELFGH KGAFTGA Sbjct: 145 ITVLLTGESGVGKEVIARYIHKHSPRSNQPFVAINCAAITETLLEAELFGHEKGAFTGAT 204 Query: 269 SNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATN 328 + GKFE+A+ GT+ LDEI E++ LQAKLLRV+Q +I RVG + + +DVR++A TN Sbjct: 205 ERKPGKFELANKGTILLDEISEMAYRLQAKLLRVIQEKEIDRVGGTKPIPIDVRIIATTN 264 Query: 329 RDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSR-VVL 387 +DL EEV G FR DLF+R++VFP+ +PPLRER DD+I LA +F + RL +S+ + Sbjct: 265 KDLAEEVKKGNFREDLFYRINVFPIRIPPLRERSDDIIPLAEFFLK--RLSNKMSKNFTI 322 Query: 388 SAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVA 447 + + L S+ GNVRELE+ I+R+ VL++ + IL E+ L E Sbjct: 323 TEDMKKFLLKKSWQGNVRELENFIYRSAVLSQ------DGILRLHE---DEINLFEEE-- 371 Query: 448 AVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLKD 504 PV L++A +RE I AL + N A++L V L GLKD Sbjct: 372 -KPVKAGKLKDA----ERELIVDALKKTEGNRTKAAKILGISVRTLRNKINEYGLKD 423 >UniRef50_Q1NW39 Nif-specific regulatory protein n=2 Tax=Deltaproteobacteria RepID=Q1NW39_9DELT Length = 541 Score = 244 bits (624), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 138/311 (44%), Positives = 190/311 (61%), Gaps = 7/311 (2%) Query: 112 ACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNM 171 + +G+P+ +N +G L++D + + D + A G N L SQ + Sbjct: 125 SFIGVPVMLAENPVGVLSVDRLFGPEISFEEDIRFLTVVATMIGQFLN-LQRTFASSQQV 183 Query: 172 LPGDATPF-----EAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAK 226 L + + + + +IG + ++ I VA S L+ GE+GTGKELVA+ Sbjct: 184 LREENSQLRRKLQDRFNRYNIIGQCKRIQEVYDYIAKVAPSRATALLLGESGTGKELVAR 243 Query: 227 AIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLD 286 AIH+A PRA P + LNCAALPE++ ESEL GH KGAFTGA+ + G+FE+AD GTLFLD Sbjct: 244 AIHQAGPRAGEPFIKLNCAALPENLLESELLGHEKGAFTGAVGQKKGRFELADGGTLFLD 303 Query: 287 EIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFH 346 EIGEL LALQAKLLRVLQ +R+G R + VDVR++AATNR L V G FRADL++ Sbjct: 304 EIGELPLALQAKLLRVLQERTFERLGGSRTIAVDVRIIAATNRSLEAGVEEGVFRADLYY 363 Query: 347 RLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRE 406 RL+V P+ +PPLRER +D+ LL +F + R RV +A L YS+PGNVRE Sbjct: 364 RLNVVPVVLPPLRERREDIPLLLDHFLRESN-RHNRRRVKFAAAVIRRLNEYSWPGNVRE 422 Query: 407 LEHAIHRAVVL 417 L++ + R V++ Sbjct: 423 LQNLVERLVIM 433 >UniRef50_Q3ABV5 Sigma-54 dependent transcriptional regulator n=3 Tax=Bacteria RepID=Q3ABV5_CARHZ Length = 732 Score = 244 bits (624), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 130/319 (40%), Positives = 203/319 (63%), Gaps = 11/319 (3%) Query: 187 MIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAA 246 + G + + ++KK IE A SD NVLI GE+G GKE+ A+ IH S RA P V +NCAA Sbjct: 422 ITGQTEKIIEVKKLIEKAAMSDGNVLIQGESGVGKEIAARTIHYLSERADKPFVAINCAA 481 Query: 247 LPESVAESELFGHVKGAFTGAI-SNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQY 305 +PE++ ESELFG+ +GAFTGA ++GK E AD GTLFLDEIG++ L++Q KLLR +Q Sbjct: 482 IPENLLESELFGYEEGAFTGAKRGGKAGKIEQADGGTLFLDEIGDMPLSMQVKLLRFIQN 541 Query: 306 GDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDV 365 + +R+G + +VD+R++AATN+ L + V GRFR DL++RL+VF +++PPLRER DD+ Sbjct: 542 REFERIGSNTPRKVDIRIIAATNQPLAKLVKEGRFRMDLYYRLNVFNINIPPLRERRDDI 601 Query: 366 ILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGD 425 LL F + R+ ++ ++++ A N+L +YS+PGN+REL++ I RA LA Sbjct: 602 PLLVNRFMNEFCERRKMAPKIVTSEAMNILMNYSWPGNIRELQNVIERAYYLAEGN---- 657 Query: 426 EVILEAQHFAFPEVTLPTPEVAAVPVVK-QNLREATEAFQRETIRQALAQNHHNWAACAR 484 +++ +H L + ++ + K +EA +++ I + L ++N ACA+ Sbjct: 658 --LIKPEHLP---AQLTSKALSGERITKITTFKEAVAEVEKKLIIEGLKATNYNKLACAK 712 Query: 485 MLETDVANLHRLAKRLGLK 503 +L A L++ K G++ Sbjct: 713 LLGIPRATLYQKIKEYGIE 731 >UniRef50_Q1D6Z5 Sigma-54 dependent transcriptional regulator, Fis family n=3 Tax=Cystobacterineae RepID=Q1D6Z5_MYXXD Length = 530 Score = 244 bits (624), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 155/378 (41%), Positives = 222/378 (58%), Gaps = 9/378 (2%) Query: 129 TLDGMQPDQFDVFSDEELRLIAAL---AAGALSNALLIEQLESQNMLPGDATPF-EAVKQ 184 TLDG + +Q V EL ++ L AA ++N E ++ PG + + + Sbjct: 144 TLDG-RSEQVPVLDGAELSKLSDLLECAANEIANHEAAEASRQEDGAPGSSRELSDRYRF 202 Query: 185 TQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNC 244 ++IG S M ++ + +E VA SD VLI+GE+GTGKELVA+AIH + PRA P V NC Sbjct: 203 EKIIGRSGPMMEVFRLMEKVANSDSTVLINGESGTGKELVARAIHLSGPRAQQPFVVQNC 262 Query: 245 AALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQ 304 +A +++ ES LFGH +GAFTGA+ ++ G FE+AD+GT FLDE+G++S ALQ KLLRVLQ Sbjct: 263 SAFNDNLLESALFGHTRGAFTGALRDKKGLFEVADSGTFFLDEVGDMSAALQVKLLRVLQ 322 Query: 305 YGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDD 364 G VG + V+VRV+AAT++DL E V G FR DL++R++V + +PPLRER DD Sbjct: 323 EGTFLPVGGTQLKEVNVRVIAATHKDLSELVKRGEFREDLYYRINVIRVQLPPLRERRDD 382 Query: 365 VILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSG 424 + +L +F + R+G L A A +L Y++PGN+RELE+ I R +VL S Sbjct: 383 MPVLIDHFLRKHH-REGQRARGLDAEALAILGAYAWPGNIRELENEIERLLVLGGDLESI 441 Query: 425 DEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACAR 484 ++ ++ + LP P L EA EA +RE I+Q L + +N + AR Sbjct: 442 PAELISSR---IRDAVLPGGGPFISPRAHGKLHEAVEALEREMIQQGLMRTRYNKSRLAR 498 Query: 485 MLETDVANLHRLAKRLGL 502 L +NL R GL Sbjct: 499 ELGISRSNLILKISRYGL 516 >UniRef50_D2R521 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R521_9PLAN Length = 474 Score = 244 bits (624), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 129/245 (52%), Positives = 168/245 (68%), Gaps = 1/245 (0%) Query: 184 QTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLN 243 + MIG S M +L+ +I + A + VLISGE+GTGKELVA+ +H AS RA LV LN Sbjct: 147 HSMMIGTSSAMQRLRSQIAVAAPTGETVLISGESGTGKELVARCVHAASGRATKALVSLN 206 Query: 244 CAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVL 303 C AL + ESELFGH +GAFT A + R G+FE+AD GT+ LDEI E+ L LQAKLLRVL Sbjct: 207 CPALSPQLMESELFGHERGAFTSADAPRVGRFELADGGTILLDEITEIELPLQAKLLRVL 266 Query: 304 QYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGD 363 Q +RVG L VDVRV+A TNR++R+EV+AGRFR DLF+RL+V PL VP LR+R + Sbjct: 267 QEKSFERVGSSETLEVDVRVIATTNREIRQEVVAGRFRQDLFYRLAVVPLVVPALRDRRE 326 Query: 364 DVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATR- 422 DV LL +F +R S + + A +LL Y +PGNVRELE+ + RA +LA + + Sbjct: 327 DVPLLVEHFLGAAAVRLERSPITVDRAASDLLCSYHWPGNVRELENLMTRASILATSEKL 386 Query: 423 SGDEV 427 S D++ Sbjct: 387 SADDL 391 >UniRef50_B1ZTC1 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Verrucomicrobia RepID=B1ZTC1_OPITP Length = 486 Score = 244 bits (624), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 127/245 (51%), Positives = 174/245 (71%), Gaps = 7/245 (2%) Query: 187 MIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAA 246 ++G SP M ++ K I V ASD+ V+I+GE+GTGKELVA++I + S R+ P + +NCAA Sbjct: 149 IVGSSPVMQEVFKIIGQVTASDVTVMITGESGTGKELVARSIWKHSHRSSKPFIAVNCAA 208 Query: 247 LPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYG 306 +P+++ ESELFGH KG+FTGA R GKFE+ D GT+FLDEIG+++LA Q K+LRVLQ G Sbjct: 209 IPDNLIESELFGHEKGSFTGATGQRLGKFELCDGGTIFLDEIGDMALATQTKILRVLQAG 268 Query: 307 DIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVI 366 +IQRVG +RVDVRVLAATN+DL V A FR DL++RL+V + +PPLRER +D+ Sbjct: 269 EIQRVGGTETIRVDVRVLAATNKDLEAMVKAKTFREDLYYRLNVVRIKMPPLRERAEDIP 328 Query: 367 LLAGYFCEQCRLRQGLSRVV-LSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGD 425 + FC Q ++Q +R +S A L +S+PGNVRELE+ I+R+ V+A+ Sbjct: 329 QIVD-FCLQNLVKQKKARATKVSPEAMAALTRHSWPGNVRELENVIYRSAVIAQG----- 382 Query: 426 EVILE 430 E ILE Sbjct: 383 EAILE 387 >UniRef50_Q1PZT5 Strongly similar to sigma 54 response regulatory protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZT5_9BACT Length = 448 Score = 244 bits (624), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 128/237 (54%), Positives = 167/237 (70%), Gaps = 4/237 (1%) Query: 183 KQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYL 242 K + MIG SP + + K I+ A SD+ VLI GE+GTGKEL AK IH+ S RA P V + Sbjct: 141 KPSSMIGNSPAIKAVFKMIDKTAPSDVTVLIQGESGTGKELAAKMIHQYSKRADKPFVIV 200 Query: 243 NCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRV 302 NCA L ES+ ESELFGHVKGAFTGA +R G FE+A+ GTLFLDEIGEL++ QAKLLRV Sbjct: 201 NCATLQESLLESELFGHVKGAFTGAAESRVGLFEIAEGGTLFLDEIGELTVNTQAKLLRV 260 Query: 303 LQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERG 362 +Q G+I+RVGD+R + VD R++AAT+++L EV GRFR DL+ RL+V L +P LRER Sbjct: 261 IQSGEIRRVGDNRVITVDARIIAATHKNLPLEVKEGRFREDLYFRLNVITLRLPSLRERK 320 Query: 363 DDVILLAGYFCEQ-CRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLA 418 DD+ L +F ++ C+ G + + A + + Y +PGN+RELE+ I R VVLA Sbjct: 321 DDLTALIQHFLQKFCK---GERTMDMHPEALHAMTLYDWPGNIRELENTIERTVVLA 374 >UniRef50_B8J0D0 Sigma54 specific transcriptional regulator, Fis family n=5 Tax=Desulfovibrionaceae RepID=B8J0D0_DESDA Length = 379 Score = 244 bits (624), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 123/237 (51%), Positives = 168/237 (70%) Query: 181 AVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLV 240 A+ +IG S + ++ K + VA +D VL++GE+GTGKEL+ +A+H S R P V Sbjct: 2 ALNTDGIIGQSTSLAEVFKVLGKVAPTDSTVLVTGESGTGKELLVRALHSNSSREDKPFV 61 Query: 241 YLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLL 300 +NC A+P+ + ESELFGH KGAFT AI +R G+FE+AD GT+FLDEIGE+ L+LQ K+L Sbjct: 62 PINCGAIPKELLESELFGHEKGAFTHAIRSRPGRFELADGGTIFLDEIGEMDLSLQVKIL 121 Query: 301 RVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRE 360 RVLQ +I+RVG +VDVR++AATNRDL EV AGRFR DL++RL+V PL +PPLRE Sbjct: 122 RVLQEKEIERVGGSGSKKVDVRIVAATNRDLEAEVAAGRFREDLYYRLNVIPLHLPPLRE 181 Query: 361 RGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVL 417 RG DV++LA +F ++ +VL AR +L Y++PGNVRELE+ + R +L Sbjct: 182 RGGDVLVLARHFLTHFCGKKKRPVLVLDDDARRVLSAYTWPGNVRELENFMERLSIL 238 >UniRef50_D0LIJ2 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LIJ2_HALO1 Length = 484 Score = 244 bits (624), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 142/326 (43%), Positives = 199/326 (61%), Gaps = 8/326 (2%) Query: 183 KQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYL 242 ++ Q++G S ++++ ++E VA VL+ GE GTGKELVA+AIH SPR+ P V + Sbjct: 160 QRWQIVGASEPLSKVMAKVERVAPVPRPVLVLGERGTGKELVARAIHHLSPRSNQPFVTI 219 Query: 243 NCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRV 302 NCAA+PES+ ESELFGH +GAFTGA + GKFE+AD GTLFLDEIG +S+ QAK+LRV Sbjct: 220 NCAAVPESLLESELFGHEEGAFTGATKRKEGKFELADGGTLFLDEIGNMSMEFQAKILRV 279 Query: 303 LQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERG 362 L+Y +RV ++VDVRV+AATN D+R ++ G FR DL+ RL+ + +PPLRER Sbjct: 280 LEYQRFERVAGAASIQVDVRVIAATNADVRAQMQRGAFRRDLYDRLAFEVIHLPPLRERM 339 Query: 363 DDVILLAGYFCEQCRLRQGLSRV-VLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARAT 421 DDV LA YF Q R RV +SA A + L Y +PGNVREL++ + RA+ +A + Sbjct: 340 DDVPALAAYFLSQFREDVAGVRVDEISADALDRLAAYDYPGNVRELKNVVERALYMASSA 399 Query: 422 RSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQN----LREATEAFQRETIRQALAQNHH 477 G E I A PE + T A+ + + L E +AF+R + AL + + Sbjct: 400 ILGAEDIESALP---PERSDATEAATALAGFRDDPALPLSERVDAFERALCKDALERTRY 456 Query: 478 NWAACARMLETDVANLHRLAKRLGLK 503 N A +L + ++ GL+ Sbjct: 457 NQKEAAALLGLTYDQFRQRYRKYGLR 482 >UniRef50_A6EHC6 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Pedobacter sp. BAL39 RepID=A6EHC6_9SPHI Length = 646 Score = 244 bits (623), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 120/233 (51%), Positives = 167/233 (71%) Query: 187 MIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAA 246 +IG S + + ++I++VAA D +VLI GE+GTGKE VA IH+ SPR P+V +NCAA Sbjct: 334 IIGQSSLLKDVFRKIQLVAADDTSVLILGESGTGKERVAHTIHKLSPRKSKPMVTVNCAA 393 Query: 247 LPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYG 306 LP ++ ESELFGH KGAFTGA R GKFE AD G++FLDEIGEL L Q KLLRVLQ Sbjct: 394 LPLTLIESELFGHEKGAFTGANDKRIGKFEQADGGSIFLDEIGELPLEAQVKLLRVLQEK 453 Query: 307 DIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVI 366 +I+R+G + +++VR++ ATNR+L +EV GRFR DL++RL+VFP+ +P LR+R +D+ Sbjct: 454 EIERLGGNGTKKINVRIITATNRNLEKEVAEGRFRLDLYYRLNVFPIELPSLRQRKEDIP 513 Query: 367 LLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLAR 419 LL+ +F ++ +SA + LQ Y +PGN+RELEH I R+V+L++ Sbjct: 514 LLSHHFIKKYSKNASAQIGGVSAASMEELQQYDWPGNIRELEHLIERSVLLSK 566 >UniRef50_B8JA19 Sigma54 specific transcriptional regulator, Fis family n=3 Tax=Anaeromyxobacter RepID=B8JA19_ANAD2 Length = 554 Score = 244 bits (623), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 144/316 (45%), Positives = 188/316 (59%), Gaps = 19/316 (6%) Query: 191 SPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPES 250 S MT L E VA ++NVLI GE+GTGKE +A+ IHE S R P+V +NCAAL E Sbjct: 253 SQAMTDLLVLAERVAPLEMNVLIEGESGTGKEFLARFIHEKSMRGDAPMVAINCAALTEG 312 Query: 251 VAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQR 310 + ESELFGH +GAFTGA+ ++ G FE A GT+ LDEIGE+ L LQAKLLR L+ + +R Sbjct: 313 LLESELFGHARGAFTGAVRDKPGLFEHAGRGTILLDEIGEMPLCLQAKLLRALESREFRR 372 Query: 311 VGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAG 370 VG ++ LR+D RV+A+TNRDLR++V G FR DLF+RL F L++PPLRER +++ LA Sbjct: 373 VGSEKVLRLDARVVASTNRDLRQQVQTGAFREDLFYRLGGFVLTIPPLRERREEIPALAH 432 Query: 371 YFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILE 430 YF R +S GA L YS+PGNVREL+HAI RA V+A + +L Sbjct: 433 YFLHSTARRWNKGVQTISPGAMRCLMSYSWPGNVRELQHAIERATVVA------SQSVLT 486 Query: 431 AQHFAFPEVTLPTPEVAAV---PVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLE 487 + PEVA P +L EA +R+ I +AL + H N A L Sbjct: 487 VKDL--------NPEVAGRLGDPAPDGDLD--VEANERQLIEEALRRYHGNRKEAAAALR 536 Query: 488 TDVANLHRLAKRLGLK 503 L R ++ GL Sbjct: 537 ISPVTLWRRVRKYGLS 552 >UniRef50_Q1H1W5 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Proteobacteria RepID=Q1H1W5_METFK Length = 472 Score = 244 bits (623), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 146/333 (43%), Positives = 207/333 (62%), Gaps = 20/333 (6%) Query: 179 FEAVKQTQMIGLSPGMTQLKKEIE----IVAASDL---NVLISGETGTGKELVAKAIHEA 231 A + +++G SP M+ +K +IE +V SD VLI GETGTGK++ A+ +H + Sbjct: 151 MHATEGVELLGDSPAMSSVKAQIERFAQLVTFSDAIPPTVLIQGETGTGKDVAARLLHLS 210 Query: 232 SPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGEL 291 + P V+++CA+LP + ESELFGH KGAFT A +R G E A++GTLFLDEIGEL Sbjct: 211 CANSDRPFVHVDCASLPAELIESELFGHEKGAFTSAQGSRCGLIEAAEDGTLFLDEIGEL 270 Query: 292 SLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVF 351 LALQAKLL VL+ ++R+G + V R +AATNRDL + VL GRFR+DLF+RL+V Sbjct: 271 PLALQAKLLNVLERRMVRRLGSTKEHPVLARFVAATNRDLHQMVLEGRFRSDLFYRLNVL 330 Query: 352 PLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAI 411 +++PPLRERGDD++LLA +F Q R GL SAGA ++++ Y +PGNVREL+H + Sbjct: 331 TMNMPPLRERGDDILLLAKHFAVQTERRYGLQPRPFSAGATSMIREYHWPGNVRELKHQV 390 Query: 412 HRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQA 471 RAV+L R ++ + A P P + +P L A +A I A Sbjct: 391 SRAVLLGRESQ------IMPHDLALPGSLQPE-QAMTIPERGVTLESAEKAL----IENA 439 Query: 472 LAQNHHNWAACARMLE-TDVANLHRLAKRLGLK 503 L Q+++N + AR L T +A +R+ +R G+K Sbjct: 440 LRQSNNNVSEAARQLGITRMAMRYRM-ERHGIK 471 >UniRef50_C6E9E0 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Deltaproteobacteria RepID=C6E9E0_GEOSM Length = 467 Score = 244 bits (623), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 142/307 (46%), Positives = 190/307 (61%), Gaps = 11/307 (3%) Query: 185 TQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNC 244 +IG S M L + IE VA SD VLI GE+GTGKELVA+AIH+ S R+ V LNC Sbjct: 142 NNIIGESEKMLSLFEMIEKVATSDSTVLIQGESGTGKELVARAIHDLSNRSDKNFVALNC 201 Query: 245 AALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQ 304 AA+P+ + ESELFGHVKG+FTGA+++R G+FEMAD GTLFLDEIG++ LQ KLLRVLQ Sbjct: 202 AAIPDELLESELFGHVKGSFTGAVASRIGRFEMADKGTLFLDEIGDMKANLQVKLLRVLQ 261 Query: 305 YGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDD 364 +++ VG R +VDVR++AATN++L V + FR DL++RLSV P+ +PPLRERG D Sbjct: 262 SRELEPVGSTRSKKVDVRIIAATNQNLDHMVASKEFREDLYYRLSVIPIMLPPLRERGSD 321 Query: 365 VILLAGYFCEQC-----RLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLAR 419 V LL F E+ R QG + V+ +L +Y +PGNVRELE+ + R V++ + Sbjct: 322 VPLLLNSFLEKFNRSKQRKVQGFDKQVME-----ILSNYDWPGNVRELENLVERLVII-K 375 Query: 420 ATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNW 479 T L ++ T+ E +P L A E F+ I QAL ++ N Sbjct: 376 TTGVISIHDLPEKYRGGRTTTVLHGEPMTLPDDGFCLNSAVEEFENRLILQALEKSGGNK 435 Query: 480 AACARML 486 A +L Sbjct: 436 KEAAELL 442 >UniRef50_Q4ZY83 Response regulator receiver:Sigma-54 factor, interaction region n=33 Tax=cellular organisms RepID=Q4ZY83_PSEU2 Length = 494 Score = 244 bits (623), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 126/231 (54%), Positives = 165/231 (71%) Query: 187 MIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAA 246 +IG P M L +I VA +D NVLI GE+GTGKELVA+A+H S RA P++ +NCAA Sbjct: 166 IIGSCPPMLDLYSKIRKVAPTDSNVLIQGESGTGKELVARALHNLSRRAKAPMISVNCAA 225 Query: 247 LPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYG 306 +PES+ ESELFGH KGAFTGA + R+G E AD GTLFLDEIGEL L QA+LLRVLQ G Sbjct: 226 IPESLIESELFGHEKGAFTGASAGRAGLVEAADGGTLFLDEIGELPLEAQARLLRVLQEG 285 Query: 307 DIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVI 366 +I+RVG + +VDVR++AAT+RDL+ G FR DLF+RL V L +P LRERG+D++ Sbjct: 286 EIRRVGSVQSQKVDVRLIAATHRDLKTLAKNGEFREDLFYRLHVIALKLPALRERGNDIL 345 Query: 367 LLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVL 417 +A F + + G + + A ++HYS+PGNVRELE+A+ R+V+L Sbjct: 346 EIAHAFLVRQSGKVGRDDLKFAHDAEQAIRHYSWPGNVRELENAVERSVIL 396 >UniRef50_A1ALJ3 Sigma-54 factor, interaction domain-containing protein n=5 Tax=Desulfuromonadales RepID=A1ALJ3_PELPD Length = 517 Score = 244 bits (622), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 142/320 (44%), Positives = 199/320 (62%), Gaps = 6/320 (1%) Query: 107 SLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQL 166 L ++ + LPL++G+ ++G LTL +FD L +A AL+NAL E+L Sbjct: 108 KLDENSGILLPLWSGEGMLGWLTLYAWGAGRFDAGHVALLATVADPFVIALANALAHEKL 167 Query: 167 -ESQNMLPGDATPFEAVKQTQ----MIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGK 221 ++ L D TQ ++G + G+ + + + VA + VL+ GETGTGK Sbjct: 168 LRYRDNLIDDNRFLSKELFTQGGDEIVGANLGLRHVMEMVRQVAPLNNTVLLLGETGTGK 227 Query: 222 ELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNG 281 EL+A AIH ASPR PL+ +NC A+PE + +SELFGH KGAFTGA++ R G+FE AD G Sbjct: 228 ELIANAIHSASPRKDGPLIKVNCGAIPEQLIDSELFGHEKGAFTGAVTERRGRFERADGG 287 Query: 282 TLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFR 341 T+FLDEIGEL L Q +LLRVLQ +I RVG R + VD+RV+AAT+R+L + RFR Sbjct: 288 TIFLDEIGELPLQAQVRLLRVLQNHEIDRVGGSRPIPVDIRVIAATHRNLESMIAENRFR 347 Query: 342 ADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQ-CRLRQGLSRVVLSAGARNLLQHYSF 400 DL+ RL+VFPL +PPLR+R +D+ L +F Q CR + ++ GA L Y++ Sbjct: 348 EDLWFRLNVFPLFIPPLRQRREDIPGLTRHFISQKCRELGMAAMPDIAPGALVRLMEYAW 407 Query: 401 PGNVRELEHAIHRAVVLARA 420 PGNVRELE+ + R ++L R Sbjct: 408 PGNVRELENLVERELILHRG 427 >UniRef50_B8IZX3 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 RepID=B8IZX3_DESDA Length = 522 Score = 244 bits (622), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 138/305 (45%), Positives = 191/305 (62%), Gaps = 11/305 (3%) Query: 113 CVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNML 172 CV P+ ++GAL++D + D+ + ++E+RL+ + S L LE+Q + Sbjct: 131 CV--PIRLNDQVVGALSVDHLLVDEATL--EDEMRLLTIV-----STLLGHAALETQGRM 181 Query: 173 PGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEAS 232 D ++ +G S GM ++ +I VA S V + GE+GTGKEL A+AIH S Sbjct: 182 --DEETSSPLRPRGFVGNSEGMQKVYAQIAQVAPSVTTVFLQGESGTGKELAARAIHSGS 239 Query: 233 PRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELS 292 RA P + LNCAALPE++ ESELFGH +GAFTGA + R G+FE+A GTLFLDE+GELS Sbjct: 240 ARAGKPFISLNCAALPENLIESELFGHERGAFTGASATRKGRFELAHGGTLFLDEVGELS 299 Query: 293 LALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFP 352 L QAKLLRVLQ +R+G VDVR + ATNR+L V FR DLF+RL+VFP Sbjct: 300 LMTQAKLLRVLQERAFERLGGMETHYVDVRFITATNRNLEHMVAKESFRRDLFYRLNVFP 359 Query: 353 LSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIH 412 + +PPLR R +D++ LA +F + G V LS ++LQ Y++PGN+RELE+ + Sbjct: 360 IYLPPLRGRPEDILPLANHFIRKFAQANGRENVRLSLSVMDMLQRYAWPGNIRELENVME 419 Query: 413 RAVVL 417 RAV+L Sbjct: 420 RAVLL 424 >UniRef50_D0Z425 Formate hydrogenlyase transcriptional activator n=1 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0Z425_LISDA Length = 739 Score = 244 bits (622), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 141/366 (38%), Positives = 221/366 (60%), Gaps = 22/366 (6%) Query: 112 ACVGLPLFAGQNL--IGALTLDGMQPDQFDVFSDEELRLIAALAAGAL-SNALLIEQLES 168 AC+ +F G + I + + + Q+D+ +++ ALA ++ ++ + + E+ Sbjct: 304 ACIVPMVFRGLTIGYICYMKRETLNYQQYDIELVQQIASRVALAMHSIKAHQATLPRTET 363 Query: 169 QNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAI 228 + + + + E +I S M Q+ +++ +VA+ D VLI GE+GTGKEL+A+AI Sbjct: 364 EQYVSIEESYDEHAIFDDIISQSEAMNQVLEKVAMVASCDSTVLILGESGTGKELIARAI 423 Query: 229 HEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEI 288 H+ S R+ +V +NCAA+P + ESELFGH +GAFTGAIS R G+FE A GTLFLDEI Sbjct: 424 HKMSLRSKTRMVKMNCAAIPAGLFESELFGHERGAFTGAISQRVGRFEQAHKGTLFLDEI 483 Query: 289 GELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRL 348 G++ L LQ KLLR LQ +I+RVG ++ + VDVR++ ATN DL V A +FR DL++RL Sbjct: 484 GDMPLELQPKLLRALQENEIERVGKNQLISVDVRIVVATNVDLLAMVDAKQFRNDLYYRL 543 Query: 349 SVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELE 408 +VFP+ VPPLR+R +D+ LL +F Q + G ++A L+Q +S+PGNVREL Sbjct: 544 NVFPIEVPPLRQRAEDIPLLVKHFARQLAQKMGKKITAIAASDLELMQRFSWPGNVRELH 603 Query: 409 HAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAV-PVVKQNLR--EATEAFQR 465 + + R+V+L R H + +P E+ ++ P + QN R E+ + + Sbjct: 604 NFVERSVILTRG------------HV----LNIPVDELISLQPHIVQNSRKMESQASLSK 647 Query: 466 ETIRQA 471 +++QA Sbjct: 648 TSLKQA 653 >UniRef50_Q893M0 Putative sigma-54 interacting protein n=1 Tax=Clostridium tetani RepID=Q893M0_CLOTE Length = 595 Score = 244 bits (622), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 118/254 (46%), Positives = 173/254 (68%), Gaps = 5/254 (1%) Query: 165 QLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELV 224 + ++ N L D F+ +MIG S M +L + IE VA ++N++++GE+GTGKELV Sbjct: 267 EFKNFNKLNNDKIGFK-----EMIGQSNSMKELYELIEKVADKNVNIMVTGESGTGKELV 321 Query: 225 AKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLF 284 +A+H R NP V +NCAA+P+ + ESELFGH KGAFTGA R G+FE+A GTLF Sbjct: 322 VRALHYGGERRDNPFVKVNCAAMPKDILESELFGHEKGAFTGADKKRVGRFELAHKGTLF 381 Query: 285 LDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADL 344 LDEIG++ L++QAK LR++Q + +RVG ++ ++VDVR++ ATN+DL++EV GRFR DL Sbjct: 382 LDEIGDMDLSIQAKFLRIIQQQEFERVGGNKTIKVDVRIICATNKDLKKEVKEGRFREDL 441 Query: 345 FHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNV 404 ++RL+ L VPPLRER +D+ L +F ++ + +S + L Y +PGNV Sbjct: 442 YYRLNTITLYVPPLRERKEDIPFLIHHFLKEKGKKFDKIAPKISPEVFDALMEYDWPGNV 501 Query: 405 RELEHAIHRAVVLA 418 RELE+A+ RA++L Sbjct: 502 RELENAMERAIILC 515 >UniRef50_B8JAZ2 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Anaeromyxobacter RepID=B8JAZ2_ANAD2 Length = 481 Score = 244 bits (622), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 143/320 (44%), Positives = 197/320 (61%), Gaps = 17/320 (5%) Query: 186 QMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCA 245 ++G SP M ++ + VA +D VL++GE+GTGKELVA+A+H S R+ P V +NCA Sbjct: 168 HIVGRSPAMREVLDRVLRVAPTDATVLVTGESGTGKELVARALHVTSRRSDKPFVPVNCA 227 Query: 246 ALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQY 305 A+ +++ ESELFGH +GAFTGA R G FE A+ GTLF+DEIGE S QAKLLR LQ Sbjct: 228 AITDTLLESELFGHARGAFTGATRARRGMFEEANGGTLFIDEIGETSPGFQAKLLRALQE 287 Query: 306 GDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDV 365 G+I+RVG+ ++V+VR++AATN+DLR + RFR DLF+RL+V PL +PPLRER +DV Sbjct: 288 GEIRRVGESSPVQVNVRIIAATNQDLRRAIAERRFREDLFYRLNVVPLRIPPLRERREDV 347 Query: 366 ILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVL--ARATRS 423 LLA +F ++ R G RV+ +L+ H +PGNVRELE+ I +A L R R+ Sbjct: 348 PLLAAHFLQRFVQRTGSERVLTPEAVASLVAH-DWPGNVRELENIIEQAAALCTGREIRA 406 Query: 424 GDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACA 483 D V +EA+ + L +A E +R I ALA+ ++ A Sbjct: 407 AD-VQIEARAAPAGGAGV-------------TLADAVEDTERRAITAALARCGNDLGRVA 452 Query: 484 RMLETDVANLHRLAKRLGLK 503 R L L R KRLG++ Sbjct: 453 RDLGISGTTLWRKMKRLGIE 472 >UniRef50_Q1JW16 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JW16_DESAC Length = 459 Score = 244 bits (622), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 154/372 (41%), Positives = 210/372 (56%), Gaps = 21/372 (5%) Query: 147 RLIAALAAGALSNALLIEQLE----SQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIE 202 R + A A G LSN +E + GD F ++G S M ++ ++I Sbjct: 87 RFVGAFADGGLSNDYRTHSVEVFLQQVSAGEGDEEAFH-----NLVGRSVAMQEVFRKIR 141 Query: 203 IVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKG 262 + AASD V+I+GETGTGKELVA+AIHE S R + P + LNC+A+ E + ESELFGH KG Sbjct: 142 LYAASDAAVVITGETGTGKELVARAIHEESERRLGPYIALNCSAISEDLLESELFGHEKG 201 Query: 263 AFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVR 322 AFTGAI + G+FE A+ G+LFLDEIG++ L Q +LLRVL+ ++ VG +R L +DVR Sbjct: 202 AFTGAIRSHRGRFERANGGSLFLDEIGDMPLHTQTRLLRVLEERQVEPVGSERVLPIDVR 261 Query: 323 VLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGL 382 ++ ATN L + V RFR+DL+HR+SV + +PPLRER DD+ LL F + G Sbjct: 262 IICATNVGLEKAVGQNRFRSDLYHRISVLRIHLPPLRERRDDIPLLVKRFLRRFSDSYGR 321 Query: 383 SRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARA----TRSGDEVILEAQHFA--F 436 S L+ A LLQ Y +PGN+REL + + R V A R+ E + E Q+F Sbjct: 322 SVERLTPEAMELLQSYLWPGNIRELRNVMERVFVENHAPVIGARAFSEWVRERQNFVQNR 381 Query: 437 PEVTLPTPEVAAVPVVKQNLREAT------EAFQRETIRQALAQNHHNWAACARMLETDV 490 E + P E A + R AT E + IR+A + N +A AR L Sbjct: 382 WEESPPREEPALITPYDPAPRPATMTLKPAEELTEQAIRRAYEECDGNISAAARRLGIHR 441 Query: 491 ANLHRLAKRLGL 502 A L+R K+L L Sbjct: 442 ATLYRHLKKLNL 453 >UniRef50_Q5P474 Phenol-degradation regulator n=11 Tax=Betaproteobacteria RepID=Q5P474_AZOSE Length = 578 Score = 244 bits (622), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 124/250 (49%), Positives = 173/250 (69%), Gaps = 11/250 (4%) Query: 169 QNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAI 228 +N +PGD MIG SPG + + AAS ++VL+ GETG GKEL A+A+ Sbjct: 227 KNQIPGD-----------MIGTSPGFRAALELLSQAAASPISVLLLGETGVGKELFARAL 275 Query: 229 HEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEI 288 HE S R PLV +NCAA+P + ESELFG KGA+TGA+ +R G+FE AD GTLFLDEI Sbjct: 276 HEMSTRRDRPLVAINCAAIPHDLVESELFGVEKGAYTGALVSRPGRFERADGGTLFLDEI 335 Query: 289 GELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRL 348 GEL L Q+KLLRVLQ G+++R+GDDR +++VR++AATN L + V GRFRADL++RL Sbjct: 336 GELPLTAQSKLLRVLQEGEVERLGDDRIRKINVRLVAATNAGLPQLVKEGRFRADLYYRL 395 Query: 349 SVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELE 408 + +P+++PPLRER +D+ +LA +F E+ G + + A+ L Y++PGN+REL+ Sbjct: 396 NAYPINIPPLRERREDISVLAKHFLEKHAAINGKKLLGFTDKAKRALTTYAWPGNIRELQ 455 Query: 409 HAIHRAVVLA 418 + + R V+LA Sbjct: 456 NTVERGVILA 465 >UniRef50_B9M610 Two component, sigma54 specific, transcriptional regulator, Fis family n=14 Tax=Deltaproteobacteria RepID=B9M610_GEOSF Length = 465 Score = 243 bits (621), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 135/301 (44%), Positives = 193/301 (64%), Gaps = 7/301 (2%) Query: 204 VAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGA 263 VAAS+ N+LI GE+GTGKEL+A AIH S R ++ +NCAAL +++ ES+LFGHV+GA Sbjct: 167 VAASEANILILGESGTGKELIAGAIHRHSKRRGRRILSINCAALSDTLLESQLFGHVRGA 226 Query: 264 FTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRV 323 FTGA +N+ G E AD+GTLF+DEIG++SL LQAKLLRV+Q GD VG R +VD+R Sbjct: 227 FTGATTNQKGLLEEADSGTLFMDEIGDMSLMLQAKLLRVIQEGDFIPVGATRAKKVDIRF 286 Query: 324 LAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLS 383 +AATN++L +EV GRFR DL++RL+V + +PPLRER +D+ LA +F + R Sbjct: 287 VAATNKNLEKEVAEGRFREDLYYRLNVISIPLPPLRERKEDIEPLARHFLRKYNQRMNKE 346 Query: 384 RVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARA-TRSGDEVILEAQHFAFPEVTLP 442 + A +L+ YS+PGN+RELE+ + RAV+LAR+ + D + + ++ A T P Sbjct: 347 VDRFTREALDLMLGYSWPGNIRELENVVERAVILARSGVVTTDHLPMWKKNVASTAATGP 406 Query: 443 TPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 +++ +V + E +RE IRQ LA+ + + A +L L R GL Sbjct: 407 ASALSSHQLV------SLENVEREHIRQTLARTGFHKSRTAEILGISRKTLDRKIAEFGL 460 Query: 503 K 503 K Sbjct: 461 K 461 >UniRef50_C0GRG2 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GRG2_9DELT Length = 464 Score = 243 bits (621), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 140/316 (44%), Positives = 197/316 (62%), Gaps = 15/316 (4%) Query: 187 MIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAA 246 ++G S M L + +E A SD V I GE+GTGKELVA+AIH SPRA P + +NCAA Sbjct: 149 IVGHSRQMKNLFELVEKAAQSDFPVFICGESGTGKELVAQAIHNLSPRAEQPYIQVNCAA 208 Query: 247 LPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYG 306 L ES+ ESELFGHVKGAFTGA+ +R G+FE A G +FLDEIG+L +A+Q KLLRVL+ Sbjct: 209 LNESLLESELFGHVKGAFTGALQHRKGRFEAAHKGDIFLDEIGDLPMAMQVKLLRVLETK 268 Query: 307 DIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVI 366 +RVGD+R + VD+R + ATN++L + + G FR DLF+R++V P+ +PPLRER +DV Sbjct: 269 TFERVGDNRTISVDLRFITATNKNLPDLIARGGFREDLFYRINVIPIHLPPLRERKEDVP 328 Query: 367 LLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDE 426 L +F ++ + + LS A + YS+PGNVREL+ A+ + VLA R E Sbjct: 329 HLVDFFIKRLSRKNKKNIQGLSPEAMRIFMQYSWPGNVRELKSALEYSYVLAEGDRIRSE 388 Query: 427 VI---LEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACA 483 + L+ F V LP P +NL++ Q++ + +AL Q+ N + A Sbjct: 389 NLPEYLKDGGNDFQAVDLP-------PAPAENLQQR----QKQELIEALKQSSGNKSQAA 437 Query: 484 RMLETD-VANLHRLAK 498 R+L + V L+R+ K Sbjct: 438 RLLGINRVTVLNRMRK 453 >UniRef50_Q1PV55 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PV55_9BACT Length = 448 Score = 243 bits (621), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 139/315 (44%), Positives = 199/315 (63%), Gaps = 22/315 (6%) Query: 186 QMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCA 245 +IG SP + ++ I V+ ++ N+LI GETGTGKELVAKAIH S R + V ++C+ Sbjct: 142 NIIGESPKIKKIYDIISHVSGTEANILIQGETGTGKELVAKAIHYNSARNNHRFVKVDCS 201 Query: 246 ALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQY 305 +L E++ ESELFGH KGAFTGA +R G+F AD+GT+FLDEIG +SLA+QAKLLRVLQ Sbjct: 202 SLTETLLESELFGHEKGAFTGATKDRVGRFRKADHGTIFLDEIGNISLAVQAKLLRVLQD 261 Query: 306 GDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDV 365 + + VG D ++VDVR++AATN DL V G FR+DLF+RL+V + +PPLRER +D+ Sbjct: 262 SEFEAVGSDESIKVDVRIIAATNADLEGCVEKGLFRSDLFYRLNVIRIFLPPLRERTEDI 321 Query: 366 ILLAGYFC-----EQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARA 420 LLA +F + + +G SR L N+L Y++PGN+RELE+ I RAV+L + Sbjct: 322 PLLAAHFLAIHNKKNRKTVEGFSRDTL-----NILTSYAWPGNIRELENVIERAVILCKK 376 Query: 421 TR-SGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNW 479 R + ++V L + E P ++ P L+E E +R+ I L N + Sbjct: 377 NRITPEDVPL------YQEKMGTRPGLSGKP-----LQELLEQTERQIIINTLEANDADK 425 Query: 480 AACARMLETDVANLH 494 A++L+ A+L+ Sbjct: 426 EKTAKILKISRASLY 440 >UniRef50_P27713 Nif-specific regulatory protein n=3 Tax=Burkholderiales RepID=NIFA_HERSE Length = 542 Score = 243 bits (620), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 136/326 (41%), Positives = 196/326 (60%), Gaps = 23/326 (7%) Query: 109 KVHACVGLPLFAGQNLIGALTL--DGMQPDQFDVFSDEELRLIAALA------------A 154 +V + VG+P+ A + ++G L + DG P + D E+RL+ +A Sbjct: 120 EVISFVGVPIKAAREMLGVLCVFRDGQSPSRS---VDHEVRLLTMVANLIGQTVRLYRSV 176 Query: 155 GALSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLIS 214 A L E+ + L G K +IG+S M ++ ++ A S +L+ Sbjct: 177 AAERQQLQEEKRQLSRQLQGK------YKLDNVIGISKAMQEVFAQVHQSAPSRSTMLLR 230 Query: 215 GETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGK 274 GE+GTGKE++A+AIH SPR P + +NCAAL E++ ESELFGH KGAFTGA R G+ Sbjct: 231 GESGTGKEVIARAIHYLSPRKDGPFIKVNCAALSETLLESELFGHEKGAFTGAQGERKGR 290 Query: 275 FEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREE 334 FE+A GTLFLDEIGE+S A QAKLLRVLQ + +RVG R ++VDVR++ ATNRDL + Sbjct: 291 FELAHGGTLFLDEIGEISPAFQAKLLRVLQEREFERVGGSRSIKVDVRLVTATNRDLEKA 350 Query: 335 VLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNL 394 V G FRADL++R++V + +PPLRER +D+ L +F E+ R+ + V +S A + Sbjct: 351 VAKGEFRADLYYRINVVSIFIPPLRERREDIPYLVEHFLEKFRVENQRAMVAMSPQAMKV 410 Query: 395 LQHYSFPGNVRELEHAIHRAVVLARA 420 + + +PGNVRELE+ + R + R Sbjct: 411 MMNCYWPGNVRELENCVERTATMMRG 436 >UniRef50_A8ZTX6 PAS modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=A8ZTX6_DESOH Length = 588 Score = 243 bits (620), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 138/313 (44%), Positives = 195/313 (62%), Gaps = 20/313 (6%) Query: 187 MIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAA 246 +IG +P M L +I ++ D+ V ISGETGTGKELVA+AIH S R P V +NC A Sbjct: 280 IIGRTPEMRSLFHQIRDLSVYDVPVNISGETGTGKELVARAIHGESTRRNGPFVPINCGA 339 Query: 247 LPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYG 306 LPE + ESELFGHV+G+F+GA+ ++ G+FE+A NGT+FLDE+ EL ++ Q KLLR LQ G Sbjct: 340 LPEGLVESELFGHVRGSFSGAVRDKKGRFELAHNGTIFLDEVAELPMSTQVKLLRFLQEG 399 Query: 307 DIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVI 366 +++VG ++ VDVRV++ATN++L++EV G FR DL++RL+V P+ +PPLR R +D+ Sbjct: 400 VLEKVGSEKQTSVDVRVISATNKNLKKEVAKGTFREDLYYRLNVVPIHLPPLRMRKNDIP 459 Query: 367 LLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDE 426 LLA YF + V ++ A LL Y++PGNVREL++ I V+ A SG++ Sbjct: 460 LLANYFVRHAAMGARTGNVTITDDAMGLLAEYAWPGNVRELQNIIQFLVIKA----SGNK 515 Query: 427 VILEAQHFAFPEVT---LPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACA 483 + A H PE+ P P+ K+ R + ET ALA+ N A A Sbjct: 516 IT--AAHLP-PEIQGDGTPLPQ-------KRGRRNKLDTGSVET---ALAKAGGNKAKAA 562 Query: 484 RMLETDVANLHRL 496 R+L A L+R Sbjct: 563 RLLGVGRATLYRF 575 >UniRef50_Q1PYB5 Similar to sigma 54 response regulatory protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYB5_9BACT Length = 645 Score = 243 bits (620), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 121/232 (52%), Positives = 163/232 (70%) Query: 186 QMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCA 245 Q++G S + + E VA ++ VLI GETGTGKEL+A AIH+ SPR P++ +NCA Sbjct: 334 QILGQSDSLKYVLYRAEQVAPTNATVLILGETGTGKELIAFAIHDMSPRKERPMITVNCA 393 Query: 246 ALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQY 305 ALP ++ ESELFG KGAFTGA + R G+FE+A+ TL LDEIGEL L LQAKLLRV+Q+ Sbjct: 394 ALPGNLIESELFGREKGAFTGADTRRIGRFEVANGSTLCLDEIGELPLELQAKLLRVIQH 453 Query: 306 GDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDV 365 + +R+G ++VDVR++A TNR+L EE+ GRFR DL++RL+VFP++VPPLR+R +D+ Sbjct: 454 NEFERLGSPHTIKVDVRIVATTNRNLEEEIRNGRFRQDLYYRLNVFPITVPPLRQRKEDI 513 Query: 366 ILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVL 417 L+ F E+ + G + A LQ Y +PGNVRELE I RAV+L Sbjct: 514 PLMVHAFVERYSRKLGKQITSIQKEAMKALQDYPWPGNVRELESIIERAVIL 565 >UniRef50_Q1PYK0 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYK0_9BACT Length = 456 Score = 243 bits (619), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 128/301 (42%), Positives = 190/301 (63%), Gaps = 5/301 (1%) Query: 194 MTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAE 253 M+Q+ ++++ +A S +VLI GE+GTGKELVA+AIH SPR P + +NCAAL ES+ E Sbjct: 151 MSQIYEQLKKIAQSKASVLIQGESGTGKELVARAIHYFSPRCEKPFIRVNCAALAESLLE 210 Query: 254 SELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGD 313 SELFGH +GA+TGA++ R G+FE+A+ GTL LDE+ E+S +QAKLLRVL+ + +RVG Sbjct: 211 SELFGHERGAYTGAVAKRIGRFELANEGTLLLDEVSEISPNIQAKLLRVLEEEEFERVGG 270 Query: 314 DRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFC 373 ++ +++DVR++A TNRDL +E+ G FR DLF+RL+V P+ +PPLRER +D+ LLA + Sbjct: 271 EKTIKIDVRIVATTNRDLAKEIQKGTFREDLFYRLNVVPIHLPPLRERREDIPLLANTYL 330 Query: 374 EQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQH 433 E+ S + A + L Y++PGNVREL++ + RAVV+ + G E Sbjct: 331 EKYSSENNSSVKSIEKRAMDYLSQYNWPGNVRELKNIMQRAVVMGSSEELGLENFTSLID 390 Query: 434 FAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANL 493 E T+ V +K+N ++ E ++E I L + N A +L+ L Sbjct: 391 IKKSEHTMCNDSVN----IKKN-GQSIEDAEKELIFTTLEKTGGNKTKAAGLLKITTRTL 445 Query: 494 H 494 Sbjct: 446 R 446 >UniRef50_Q1IRW0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IRW0_ACIBL Length = 463 Score = 243 bits (619), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 130/263 (49%), Positives = 176/263 (66%), Gaps = 3/263 (1%) Query: 156 ALSNALLIEQLESQNM-LPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLIS 214 A+ NA+ L+ QN+ DA ++ ++G SP M +LK I +VA++ VLI Sbjct: 114 AIGNAVERGSLKRQNLAYKRDAAGRNSLDN--IVGTSPAMGKLKNTIRMVASTGSTVLIH 171 Query: 215 GETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGK 274 GE+GTGKELVA+A+H SPRA P +NC A PE++ ESELFG+VKGAFTGA+ N+ G Sbjct: 172 GESGTGKELVARAVHTCSPRAGEPFTSINCGAFPETLLESELFGYVKGAFTGAVQNKRGL 231 Query: 275 FEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREE 334 FE++ GT+FLDEI E++L +Q KLLRVLQ I+ VG + VDVRV+AATN++L + Sbjct: 232 FEVSTGGTIFLDEISEMTLTMQVKLLRVLQERCIRPVGGTSEIPVDVRVIAATNKNLDAQ 291 Query: 335 VLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNL 394 V G FR DL++RLSV P+ VPPLRER DD+ LLA +F ++ G S + + Sbjct: 292 VADGVFREDLYYRLSVIPVQVPPLRERVDDIELLANHFLKKYAPAAGKSIRAIRVESLGD 351 Query: 395 LQHYSFPGNVRELEHAIHRAVVL 417 L+ Y +PGNVR+LE+ I RAV L Sbjct: 352 LREYDWPGNVRQLENTIERAVAL 374 >UniRef50_A3ZNW8 Response regulator of hydrogenase 3 activity (Sensor HydH) n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZNW8_9PLAN Length = 466 Score = 243 bits (619), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 130/243 (53%), Positives = 164/243 (67%), Gaps = 1/243 (0%) Query: 176 ATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRA 235 ATP E Q MIG S M Q++++I VA +D VLI GE+G GKEL+A+ IHE+S RA Sbjct: 138 ATPGE-TNQVAMIGESRAMQQVRQQIAQVAPTDETVLIIGESGVGKELIARTIHESSRRA 196 Query: 236 VNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLAL 295 L+ LNC L + ESELFGH +GAFT A S R G+FE+A+ GT+ LDEI E+ L+L Sbjct: 197 GRALISLNCPVLSAHLMESELFGHTRGAFTSADSARVGRFELAEQGTILLDEISEIDLSL 256 Query: 296 QAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSV 355 QAKLLRVLQ +RVG L DVRVLA +NRDL EV AGRFR DL++RL+V P+ + Sbjct: 257 QAKLLRVLQERCYERVGSSETLETDVRVLATSNRDLPGEVTAGRFRRDLYYRLAVVPIEL 316 Query: 356 PPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAV 415 PPLR+R DD+ LL YF +Q R + A A +LL + +PGNVRELE+ + RA Sbjct: 317 PPLRQRRDDIPLLVDYFLQQTAARLEKPVFDMRAEALDLLMRHDWPGNVRELENIVTRAC 376 Query: 416 VLA 418 VLA Sbjct: 377 VLA 379 >UniRef50_Q3AAC4 Sigma-54 dependent transcriptional regulator n=2 Tax=Clostridia RepID=Q3AAC4_CARHZ Length = 516 Score = 243 bits (619), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 140/302 (46%), Positives = 188/302 (62%), Gaps = 15/302 (4%) Query: 204 VAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGA 263 VA +D VLI GE+GTGKEL A+AIH SPR P V LNCAA+PES+ ESELFG+V+GA Sbjct: 225 VARTDTTVLIRGESGTGKELFARAIHLESPRRTKPFVPLNCAAVPESLLESELFGYVEGA 284 Query: 264 FTGAISN-RSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVR 322 FTGA + G E A GTLFLDEI EL LQAKLLRVLQ G ++R+G + VD+R Sbjct: 285 FTGAKKGGKQGLLEFAHEGTLFLDEIAELPTHLQAKLLRVLQEGKVRRIGGQEEIPVDIR 344 Query: 323 VLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGL 382 ++AATNR+L V G+FR DL+ RL+VFPL +PPLRER +D+ +L +F R+G+ Sbjct: 345 IIAATNRNLEGMVREGKFREDLYFRLNVFPLQIPPLRERVEDIEVLTYHFLNTFAKRRGI 404 Query: 383 SRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLP 442 ++ A N L+ YS+PGNVREL++ I RA+ LA D+ ++EA+ ++ L Sbjct: 405 QYFEITENALNKLKAYSWPGNVRELQNVIERALTLA------DDGVIEAK-----DIILD 453 Query: 443 TPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 P+ V + L EA ++E I +AL Q + + AR L L K+L L Sbjct: 454 NPQNTY--FVARTLEEAVNQVEKELIERALKQ-YPSIRQAARSLGVTHTTLRNKIKKLKL 510 Query: 503 KD 504 + Sbjct: 511 TN 512 >UniRef50_Q5ZUN1 Sigma 54-dependent response regulator n=10 Tax=Gammaproteobacteria RepID=Q5ZUN1_LEGPH Length = 453 Score = 243 bits (619), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 134/298 (44%), Positives = 189/298 (63%), Gaps = 16/298 (5%) Query: 204 VAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGA 263 VA SD+ V+ISGE+GTGKE++A IH+ S R+ P + +NCAA+PE + E+ LFG+ KGA Sbjct: 161 VAQSDVGVMISGESGTGKEVLAHFIHDHSYRSKQPFIAINCAAIPEQMLEATLFGYEKGA 220 Query: 264 FTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRV 323 FTGA + GKFE A GTL LDE+ E+SL LQAKLLRVLQ +++R+G ++ + +DVR+ Sbjct: 221 FTGAYKSTPGKFEQAQGGTLLLDEVSEMSLGLQAKLLRVLQEKEVERIGSNKIINLDVRI 280 Query: 324 LAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFC-EQCRLRQGL 382 +A TNR L+EEV AGRFR DL++RL+VFPL PLRER D+I LA Y + C+ +Q + Sbjct: 281 IATTNRQLKEEVQAGRFREDLYYRLNVFPLQWHPLRERTSDIIPLANYLIRKHCQHKQPI 340 Query: 383 SRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPE-VTL 441 V+ S A+ + YS+PGN REL++ I RA+VL + I+E +H T+ Sbjct: 341 VPVI-SPDAQKAMLSYSWPGNARELDNVIQRALVLQ------TQGIIEEEHLQITNSTTM 393 Query: 442 PTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANL-HRLAK 498 P+ E +NL + + E I + L +N N A +L L ++LAK Sbjct: 394 PSEE--KTKGTSKNL----QIHEYELIEKTLLENEGNRQKVAALLGVSERTLRYKLAK 445 >UniRef50_Q1D1F9 DNA-binding reponse regulator HsfA n=3 Tax=Myxococcus RepID=Q1D1F9_MYXXD Length = 485 Score = 242 bits (618), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 145/319 (45%), Positives = 197/319 (61%), Gaps = 12/319 (3%) Query: 187 MIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAA 246 +IG S M + K +E V+ S VLI GE+GTGKELVA+AIH S R P V +NC+A Sbjct: 148 LIGQSTQMRSVFKLVETVSHSTATVLIQGESGTGKELVARAIHYRSARKDKPFVAVNCSA 207 Query: 247 LPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYG 306 L E++ ESELFGHVKG+FTGA N+ G FE AD GT+FLDEIG++ A Q +LLRVLQ G Sbjct: 208 LTETLLESELFGHVKGSFTGATGNKKGLFEAADGGTIFLDEIGDVPPATQVRLLRVLQEG 267 Query: 307 DIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVI 366 +++RVG + ++VDVRV+AAT+ DL G+FR DLF+RL+V + +PPLR+R +DV Sbjct: 268 EVKRVGANEPVKVDVRVIAATHVDLSRAKEQGKFREDLFYRLNVITIDLPPLRDRPEDVP 327 Query: 367 LLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDE 426 LLA +F + + +S A L + GNVRELE+ I RAVVL +G+E Sbjct: 328 LLAHHFLKLYASKADKKVTGISPRAMEALTCNRWTGNVRELENVIERAVVL-----TGNE 382 Query: 427 VI-LEA-----QHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWA 480 VI +E Q P+ T+ +A +P Q R A AF+R + L +N+ N + Sbjct: 383 VIDVEDLPPGFQSAPQPDSTVEVFSLAHLPYA-QAKRLAMRAFERRYLSALLEKNNQNVS 441 Query: 481 ACARMLETDVANLHRLAKR 499 + AR D +N RL K+ Sbjct: 442 SAARAAGVDRSNFRRLLKQ 460 >UniRef50_C1F980 Sigma-54 dependent DNA-binding response regulator n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F980_ACIC5 Length = 420 Score = 242 bits (618), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 129/250 (51%), Positives = 173/250 (69%), Gaps = 14/250 (5%) Query: 173 PGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEAS 232 PG T V+ ++IG +P M ++ + I +VA VL+ G TG+GKELVA+AIH S Sbjct: 164 PGPGT----VRLPELIGEAPAMLEVSRRIRLVAPRAATVLVQGPTGSGKELVARAIHRLS 219 Query: 233 PRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELS 292 PRA LV LNCAA+P+++ E+ELFGH +GAFTGA+ R G+ E AD GTLFLDEIGE+ Sbjct: 220 PRANRRLVALNCAAIPDTLLEAELFGHTRGAFTGAVQGRIGRIEAADGGTLFLDEIGEMP 279 Query: 293 LALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFP 352 LALQAKLLR L+ G++QR+GD+ +RVDVR++AAT+R L E V AG FRADL++RL+VF Sbjct: 280 LALQAKLLRFLETGEVQRIGDNDPIRVDVRIVAATHRSLAEMVKAGSFRADLYYRLAVFL 339 Query: 353 LSVPPLRERGDDVILLA----GYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELE 408 + P L ER +D+ LL EQ +R+ LSA A L+ +++PGNVREL+ Sbjct: 340 IRTPGLGERPEDLPLLVERLLARMAEQAPVRR------LSAEAMERLRQHAWPGNVRELQ 393 Query: 409 HAIHRAVVLA 418 H + RA +LA Sbjct: 394 HVLERAAILA 403 >UniRef50_A9FIF3 Sigma-54 dependent DNA-binding response regulator n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FIF3_SORC5 Length = 460 Score = 242 bits (618), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 149/324 (45%), Positives = 196/324 (60%), Gaps = 18/324 (5%) Query: 186 QMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCA 245 ++IG S M L+++I A + V ++GE GTGKELVA+AIH AS RA PL +NCA Sbjct: 140 ELIGESRAMLDLREQIARAAKATATVFVTGERGTGKELVARAIHGASKRARGPLEKMNCA 199 Query: 246 ALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQY 305 A+P + ESE+FGH GAFTGA R GKFE A GTLFLDE+G++ LA+QAKLLRVLQ Sbjct: 200 AVPSELIESEMFGHEAGAFTGATKQRRGKFERASGGTLFLDEVGDMPLAMQAKLLRVLQE 259 Query: 306 GDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDV 365 +I+RVG ++VDVRV+AATNRD+ G+FR DL+ RL+V PLS+PPLR R +DV Sbjct: 260 REIERVGGHETIKVDVRVVAATNRDIEAACREGQFRPDLYDRLNVLPLSLPPLRARREDV 319 Query: 366 ILLAGYF---CEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLA--RA 420 LA +F Q R G++ + G +L YSFPGNVREL + I R V+L Sbjct: 320 PQLARHFLALATQANDRPGMA---FTDGGMGVLVAYSFPGNVRELRNIIERLVILTPDET 376 Query: 421 TRSGD-EVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNW 479 GD +V L Q A + L P VP R E +R + +AL + Sbjct: 377 IDEGDVKVCLGGQQAAM-KGGLFRP---GVP-----FRVLAEEAERAILEEALGHHGGQM 427 Query: 480 AACARMLETDVANLHRLAKRLGLK 503 AA AR L + ++L++ K LGL+ Sbjct: 428 AATARGLGLERSHLYKKFKALGLR 451 >UniRef50_A0LH02 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LH02_SYNFM Length = 510 Score = 242 bits (618), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 157/404 (38%), Positives = 229/404 (56%), Gaps = 36/404 (8%) Query: 112 ACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQN- 170 + +G+P+ IG L +D + D+ V +E++RL++ +A LI Q S N Sbjct: 119 SFLGVPILLHGKAIGVLHVDRLFGDE--VPFEEDIRLLSIVAT-------LIAQFVSLNR 169 Query: 171 -------MLPGDATP-----FEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETG 218 L D +P EA + M+G SP M +++ IE VA S +VL+ GE+G Sbjct: 170 QVKLREAKLLRDCSPSGKKGIEAGDRFFMVGRSPSMLVVQRHIEKVAPSKASVLLLGESG 229 Query: 219 TGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMA 278 TGK LVA+ +HE S R+ P V +NCA+LPE++ ESELFG+ KGAFTGA+ ++ G+ E A Sbjct: 230 TGKTLVAQMLHELSIRSSAPFVKINCASLPENLLESELFGYEKGAFTGAVRSKPGRIEEA 289 Query: 279 DNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAG 338 + GT+FLDE+GEL+ ALQAKLLR LQ + +R+G R VDVRVLAATNRDL V G Sbjct: 290 EGGTVFLDEVGELTPALQAKLLRFLQDKEFERLGSTRTRVVDVRVLAATNRDLAAVVAEG 349 Query: 339 RFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHY 398 FR DL++RL+VFP+ +PPLR R +D+ L +F ++ G R+ ++ A LL Y Sbjct: 350 TFREDLYYRLNVFPIQIPPLRARKEDIPDLLHHFLDRISREYG-RRIGITNAAMALLAGY 408 Query: 399 SFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLRE 458 +PGNVRE+E+ + R V++A G V+ F ++T E + Sbjct: 409 DWPGNVREMENLVERMVIMADEDEIGVNVL---PPFLSEQMTGSGGETLS---------- 455 Query: 459 ATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 E +R+ I AL +N N A+ L + + ++ GL Sbjct: 456 RIEKMERKEILAALERNGWNQTRTAKELGITLRQIGYRVRKFGL 499 >UniRef50_A7HIM1 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Myxococcales RepID=A7HIM1_ANADF Length = 495 Score = 242 bits (618), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 141/318 (44%), Positives = 201/318 (63%), Gaps = 10/318 (3%) Query: 187 MIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAA 246 ++G S M ++ ++ VA++ VL+ GE+GTGKELVA+AIH+ASPR P V ++CAA Sbjct: 175 LVGSSEPMRRVLDQVRKVASTGATVLVLGESGTGKELVARAIHDASPRREQPFVSISCAA 234 Query: 247 LPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYG 306 +PE + ESELFGH KGAFTGAI + G+FE+A+ GTLFLDE+GE+ A+Q KLLRVLQ Sbjct: 235 IPEGLLESELFGHEKGAFTGAIRRKLGRFELANGGTLFLDEVGEIPHAVQVKLLRVLQER 294 Query: 307 DIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVI 366 +RVG + + VDVRV++ATNR+L + V +GRFR DL++RL+V P+ +PPLR+R DV Sbjct: 295 QFERVGGEETVEVDVRVVSATNRNLAQMVESGRFREDLYYRLNVVPILLPPLRDRPGDVE 354 Query: 367 LLAGYFCEQCRLRQGLSRVV--LSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSG 424 LA +F RL +SR V L+ A LL+ + +PGNVRELE+ I +A+V A Sbjct: 355 ELARFFV--ARLAPRMSRAVTGLAPEALELLRRHRWPGNVRELENVIEQALVFAEGELVR 412 Query: 425 DEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACAR 484 + E A P +LP VP ++L + E +R+ I A + A AR Sbjct: 413 PRDLPEGVRKAPPAPSLP------VPSGDRSLTDILEDLERQLILAAYEKARGVKAETAR 466 Query: 485 MLETDVANLHRLAKRLGL 502 +L + L+ ++ G+ Sbjct: 467 LLGIKPSALYYKLEKYGI 484 >UniRef50_B3E7V2 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Desulfuromonadales RepID=B3E7V2_GEOLS Length = 466 Score = 242 bits (617), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 146/333 (43%), Positives = 201/333 (60%), Gaps = 22/333 (6%) Query: 185 TQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNC 244 + +IG S M L + IE VA S VLI GE+GTGKEL A+AIH+ S R+ V +NC Sbjct: 140 STIIGRSRQMLNLFEMIEKVAESSATVLIQGESGTGKELAARAIHQLSSRSSKNFVPVNC 199 Query: 245 AALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQ 304 AA+P+ + ESELFGHVKG+FTGA +NR G+FEMAD GTLFLDEIG++ LQ KLLRVLQ Sbjct: 200 AAIPDDLLESELFGHVKGSFTGAYANRIGRFEMADKGTLFLDEIGDMKATLQVKLLRVLQ 259 Query: 305 YGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDD 364 + + VG R +VDVR++AA+N++L E+V FR DL++RLSV P+++PPLR+R +D Sbjct: 260 AKEFEPVGSTRSQKVDVRIIAASNKNLDEQVATRDFREDLYYRLSVIPITIPPLRDRRED 319 Query: 365 VILLAGYFCEQC-----RLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLAR 419 + LL +F Q RL +G +R L +L +Y +PGNVRELE+ + R + + Sbjct: 320 IPLLINHFQGQFNRDRRRLVKGFTREALE-----MLCNYDWPGNVRELENLVERMITMK- 373 Query: 420 ATRSGDEVI--LEAQHFAFPEVTLPTPEVA-AVPVVKQ------NLREATEAFQRETIRQ 470 SG + L ++ A V P V+ +VPV K+ L A +AF+ I Q Sbjct: 374 --ESGFITVDDLPEKYLAPRTVVAPPLSVSGSVPVGKELPPEGICLNSAVDAFENGLIMQ 431 Query: 471 ALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 AL + N A +L L K+ L+ Sbjct: 432 ALHRTGGNKKEAAALLNLKRTTLIEKLKKKNLQ 464 >UniRef50_D2L4T0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L4T0_9DELT Length = 461 Score = 242 bits (617), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 140/318 (44%), Positives = 194/318 (61%), Gaps = 20/318 (6%) Query: 187 MIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAA 246 ++G P M + I+ VAASD VL+ GE+GTGKELVA AIH+ASPR PLV +NC A Sbjct: 148 IVGDCPAMRDVYAMIDKVAASDAPVLVHGESGTGKELVAMAIHQASPRRQQPLVSINCGA 207 Query: 247 LPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYG 306 +PE++ ESE FGH +GAFTGA + GK E A+NGTLFLDEIGEL + LQ KLLR LQ Sbjct: 208 IPENLLESEFFGHERGAFTGATNTVKGKVEYAENGTLFLDEIGELPVNLQVKLLRFLQDM 267 Query: 307 DIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVI 366 QRVG + L V+VRVLAATN +++E + G+FR DL++R+ V + +PPLR+RG+DV+ Sbjct: 268 RFQRVGGRKTLEVNVRVLAATNVNIQEAMRLGQFREDLYYRIGVVGIHLPPLRDRGEDVV 327 Query: 367 LLAGYFCE-----QCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARAT 421 LLA +F E + QG S + A +++Y +PGNVRELE+ + RA++L + Sbjct: 328 LLANHFLEIHGKQLPKKIQGFSPEAMEA-----IRNYPWPGNVRELENKVRRAIILVEGS 382 Query: 422 RSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAA 481 R + + A E + P P A + LREA +R+ + QAL + N Sbjct: 383 RITPQSLGLAG-----EASSPGPARA-----ETTLREARTQLERQMMLQALRRFEGNIVK 432 Query: 482 CARMLETDVANLHRLAKR 499 + L + L ++ Sbjct: 433 ASEALGVSRPTFYDLLRK 450 >UniRef50_A3EPR9 Putative two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Leptospirillum RepID=A3EPR9_9BACT Length = 489 Score = 242 bits (617), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 153/370 (41%), Positives = 210/370 (56%), Gaps = 24/370 (6%) Query: 141 FSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATP-FEAVKQTQMIGLSPGMTQLKK 199 FS EELR +AG + P P +EAV + ++ PG+ + K Sbjct: 109 FSPEELRKKLTASAGRRT--------------PDAGRPVWEAVSRP-ILTRDPGLIGVLK 153 Query: 200 EIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGH 259 ++ VA + +LI GE+GTGKEL+A+ +HE SPR P V +NCAALPES+ ESELFG+ Sbjct: 154 MLDGVARTPATILIEGESGTGKELLARYVHERSPRVHRPFVAVNCAALPESLLESELFGY 213 Query: 260 VKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRV 319 KGAF+GA++ + GKFE+A GTL LDEIGE+ LALQAKLLRV+Q ++ RVG + V Sbjct: 214 EKGAFSGALARKIGKFELAHTGTLLLDEIGEMDLALQAKLLRVIQEREVDRVGGASPVPV 273 Query: 320 DVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLR 379 D+R++A TNR+++E V G+FR DL++RL VFP+ VP LR+R D++LLA +F E+ RL Sbjct: 274 DIRIVATTNRNMKEMVKTGQFREDLYYRLRVFPVRVPALRQRPADIVLLANHFREKFRLE 333 Query: 380 QGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVIL-----EAQHF 434 + L+A A L+ SFPGNVRELE+ I +A LA G E +L E Sbjct: 334 H-MEVGELTAEAVECLRSASFPGNVRELENVIIQAAFLAGGGHIGPEHLLSLGGEETNGL 392 Query: 435 AFPEVTLPTPEVAAVPVVKQNLREATEAF--QRETIRQALAQNHHNWAACARMLETDVAN 492 + T P + +R + +RE IR L N A+ML V Sbjct: 393 SSAFSTPPKEQKTGDGFSPNGVRPGQSVWEVERELIRVTLEACGQNRTQAAKMLGISVRT 452 Query: 493 LHRLAKRLGL 502 L G+ Sbjct: 453 LRNKLNEYGM 462 >UniRef50_D0LL00 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LL00_HALO1 Length = 449 Score = 242 bits (617), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 136/319 (42%), Positives = 194/319 (60%), Gaps = 14/319 (4%) Query: 186 QMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCA 245 Q++G M Q+ + ++ VAA+D VLI GETGTGKEL+A+ IH SPR P + +C Sbjct: 136 QLLGGDTKMRQMFQLLKDVAATDATVLIEGETGTGKELIAEEIHNHSPRKNGPFIVFDCG 195 Query: 246 ALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQY 305 A+P + ES LFGHVKG+FTGAI++R G F A GT+FLDEIGE+++ LQ LLRVL Sbjct: 196 AVPRELIESALFGHVKGSFTGAITDRRGAFTEAHGGTIFLDEIGEMAMDLQPSLLRVLDK 255 Query: 306 GDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDV 365 ++RVG + ++DVRV+AATNRDLR EV FR DL++RL+V +SVPPLRERG D+ Sbjct: 256 RAVRRVGSNTYEKIDVRVVAATNRDLRAEVSKKNFREDLYYRLAVIRVSVPPLRERGTDI 315 Query: 366 ILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARA-TRSG 424 LL +F Q + + ++ +Q +S+PGNVREL ++I RA +L+R T + Sbjct: 316 PLLVQHFINQFSSDRPIP---ITPDDMASIQRHSWPGNVRELRNSIERACLLSRGETLNV 372 Query: 425 DEVILEAQHFAFP-EVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACA 483 D+ +++ A LP E + E F+RE I + ++ N +A A Sbjct: 373 DDALMDESSPALGIRTDLPFKEAKG---------QLVEMFEREYIEDLMRRHKMNLSAAA 423 Query: 484 RMLETDVANLHRLAKRLGL 502 R + D +L L ++ GL Sbjct: 424 REAQIDRKHLRELIRKYGL 442 >UniRef50_Q1D9F3 Sigma-54 dependent transcriptional regulator, Fis family n=3 Tax=Cystobacterineae RepID=Q1D9F3_MYXXD Length = 546 Score = 241 bits (616), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 149/321 (46%), Positives = 195/321 (60%), Gaps = 17/321 (5%) Query: 187 MIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAA 246 +IG P + QL + IE VA S V I GE+GTGKELVA+AIH S RA PLV +NCAA Sbjct: 231 IIGGDPSVRQLSELIERVAPSSAAVTILGESGTGKELVARAIHACSQRANRPLVPVNCAA 290 Query: 247 LPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYG 306 + + + ESELFGH KG+FTGA+ R G FE AD GTLFLDEIGEL L LQAKLLR L+ G Sbjct: 291 ISKELIESELFGHEKGSFTGAMGARKGAFEEADGGTLFLDEIGELPLDLQAKLLRALEGG 350 Query: 307 DIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVI 366 +I+RVG R VDVRV+AATNRDL GRFR DL++RL V PL +PPLR R D+ Sbjct: 351 EIKRVGASRPQTVDVRVVAATNRDLLAAAREGRFREDLYYRLCVIPLHLPPLRSRKADLG 410 Query: 367 LLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDE 426 LA +F R G S V + A LQH+++PGN+REL + +HRA++L + Sbjct: 411 SLAEHFVRTYAPR-GQS-VRFTPAALERLQHHAWPGNIRELRNVVHRALLLRKGP----- 463 Query: 427 VILEAQHFAFP-----EVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAA 481 +++A +F E + PE+ ++Q L E +R+ + AL + ++N Sbjct: 464 -LIDAGDISFDQELNRETGIAVPELPPGMTLEQML----EKLERQIVEAALRRYNNNRER 518 Query: 482 CARMLETDVANLHRLAKRLGL 502 AR L + L + K GL Sbjct: 519 VARELGVARSTLFKRLKDWGL 539 >UniRef50_B5YI42 AdnA n=3 Tax=Bacteria RepID=B5YI42_THEYD Length = 324 Score = 241 bits (616), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 137/326 (42%), Positives = 198/326 (60%), Gaps = 16/326 (4%) Query: 187 MIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAA 246 +IG S + ++ I+ ++ +D LI GE+GTGKELVAK IH+ S RA P + +NCAA Sbjct: 2 IIGQSIQIQRILTFIDKLSKTDTTALIMGESGTGKELVAKMIHQKSSRAEKPFIPVNCAA 61 Query: 247 LPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYG 306 +P + ESELFGH KGAFTGA + R G+FE+A+ GT+FLDEIG++ L LQ K+LRV+Q Sbjct: 62 IPSELLESELFGHEKGAFTGAQNCRYGRFELANEGTIFLDEIGDMPLHLQVKILRVIQEK 121 Query: 307 DIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVI 366 +R+G R ++V+VR++AATN+DL EV GRFR DLF RL+V P+ +PPLRER +D+ Sbjct: 122 TFERIGGTRPIQVNVRIIAATNKDLENEVKEGRFREDLFWRLNVVPVVIPPLRERKEDIP 181 Query: 367 LLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDE 426 LL YF + + G S + + + +Y++PGNVRELE+ I R VL + Sbjct: 182 LLCEYFINKFSHKFGYS-LQIKPEVMQIFLNYTWPGNVRELENLIERLYVLNEGGNINIK 240 Query: 427 VILEAQHF---AFPEVTLP---TPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNW- 479 I E F +F + +P P + + +L E + ++++ I AL N H W Sbjct: 241 DIPERIRFGENSFQKELIPDDLNPFSSGI-----DLNEVLKEYEKKLILHAL--NLHGWI 293 Query: 480 -AACARMLETDVANLHRLAKRLGLKD 504 + A+ L + L KRL +KD Sbjct: 294 KSRAAKYLNINRTTLIEKMKRLNIKD 319 >UniRef50_A0LFW8 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Bacteria RepID=A0LFW8_SYNFM Length = 472 Score = 241 bits (616), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 145/350 (41%), Positives = 207/350 (59%), Gaps = 16/350 (4%) Query: 157 LSNALLIEQLESQNMLPGDATPFEAVKQ-TQMIGLSPGMTQLKKEIEIVAASDLNVLISG 215 + AL +QL+ +N + E Q +IG S M L +I+ VA + VLI+G Sbjct: 115 VDQALKWQQLQKENTYLRER--LEGKSQFASLIGSSRAMRTLHNQIDRVAKTSATVLITG 172 Query: 216 ETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKF 275 E+GTGKELVA+ +H+ S R + LNC+ LPES+ ESELFGH++G+FTGA+ ++ G Sbjct: 173 ESGTGKELVARELHKHSLRKDEQFIPLNCSTLPESIIESELFGHLRGSFTGALRDKKGLI 232 Query: 276 EMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEV 335 E A++GTLFLDEIG+LS+A+Q KLLR+LQ G+ + +G + RVD+R +AATN++L E++ Sbjct: 233 EEANHGTLFLDEIGDLSMAMQVKLLRLLQEGEYKAIGSNTIRRVDIRFIAATNQNLHEKI 292 Query: 336 LAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLL 395 G FR DLF+RL+V + VPPLRER DD+ LL F E+ + + +S N L Sbjct: 293 RRGEFREDLFYRLNVINIVVPPLRERLDDIPLLVHSFLEKYNVLHHKNIKRVSPVTLNAL 352 Query: 396 QHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLP---TPEVAAVPVV 452 +PGNVRELE+ I R V++A SG+ LE + P P TP + + Sbjct: 353 MQRDWPGNVRELENTIERGVIMA----SGN--TLETEDVTLPCREAPSSETPLFSEGDIY 406 Query: 453 KQNLREAT----EAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAK 498 +EA E FQ + I +ALA++ N + AR LHRL + Sbjct: 407 SMPFKEAKDKLIEEFQSQYISKALARHSGNVSQAARESGLKRQYLHRLMR 456 >UniRef50_A7HGB6 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Cystobacterineae RepID=A7HGB6_ANADF Length = 490 Score = 241 bits (616), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 157/371 (42%), Positives = 215/371 (57%), Gaps = 28/371 (7%) Query: 144 EELRLIAALAAGALSNALLIEQ---LESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKE 200 E++ L+A A A +L ++ LE+Q P ++G S + ++ + Sbjct: 113 EDVELVARAVAKAAERKMLFDRNRRLETQLREKEGGAP------EGLVGNSAPIREVVRM 166 Query: 201 IEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHV 260 IE VA S VL++GE+GTGKELVA+A+H SPR P V LNC AL E++ ESELFGHV Sbjct: 167 IEAVAYSATTVLVTGESGTGKELVARALHARSPRRAQPFVALNCGALTETLLESELFGHV 226 Query: 261 KGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVD 320 KGAFTGA ++ G F+ AD GT+FLDEIG++ A Q +LLRVLQ G+++RVG +RVD Sbjct: 227 KGAFTGAQRDQKGLFDAADGGTIFLDEIGDIPPATQVRLLRVLQEGELKRVGSAESVRVD 286 Query: 321 VRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQ 380 VRV+AAT+RDL V AG+FR DLF+RL+V + +P LR+R DDV LLA +F + R Sbjct: 287 VRVIAATHRDLPRLVKAGKFREDLFYRLNVINIPLPSLRDRVDDVPLLAHHFLRRYAERL 346 Query: 381 GLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLAR--ATRSGD----------EVI 428 G L+ A LL Y +PGNVRELE+AI RAVVL R A GD ++ Sbjct: 347 GKRVRALAPDAIELLCGYRWPGNVRELENAIERAVVLCRGEAVTGGDLPPAVTGRTAPLV 406 Query: 429 LEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLET 488 EA V L A +Q+LR F++ + + +N +A AR Sbjct: 407 REAPAGGDEAVWLTMSYATA---KEQSLRR----FEKGYVETLMRHCDNNISAAARKAGM 459 Query: 489 DVANLHRLAKR 499 D +N R+ ++ Sbjct: 460 DRSNFKRVLRK 470 >UniRef50_B0VES5 Putative uncharacterized protein n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VES5_9BACT Length = 1454 Score = 241 bits (616), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 146/379 (38%), Positives = 222/379 (58%), Gaps = 17/379 (4%) Query: 114 VGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLP 173 + LPL +N +G + L ++ FS+ + L++AL+ + ++IE + S N+ Sbjct: 1066 LALPLSIRKNTMGVVLLFCKSGSKY--FSERIINLLSALSNQII---VIIENILSANLEK 1120 Query: 174 GDATPFEAVKQ----TQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIH 229 E + + +IG SP M ++ + IE V + VL+ G +GTGKEL+A+A+H Sbjct: 1121 SHNIIREQLSSNNIYSNIIGKSPEMMKIFEIIEKVKDTPTTVLLEGPSGTGKELIARALH 1180 Query: 230 EASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIG 289 +S R V C ALPE++ ESELFGHVKG+FTGA ++ G FE+AD GT FLDEI Sbjct: 1181 YSSNRRNKAFVAQYCGALPETLLESELFGHVKGSFTGAAYDKKGLFEIADGGTFFLDEIS 1240 Query: 290 ELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLS 349 ++S + Q+KLLR LQ G+I+RVG + +VDVRV+ ATN L E V +G FR DL++RL+ Sbjct: 1241 DISQSTQSKLLRFLQEGEIKRVGATKTEKVDVRVVCATNTPLMERVKSGEFRLDLYYRLN 1300 Query: 350 VFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEH 409 V + VPPL+ R D+ LLA +F ++ R + + +A A +L+ Y +PGNVR+LE+ Sbjct: 1301 VIRIDVPPLKNRTGDIPLLAIHFLDKYNKRMNKNVMGFTAEAMKVLEQYDWPGNVRQLEN 1360 Query: 410 AIHRAVVLARATRSGDEVILEAQHFAFPEVT--LPTPEVAAVPVVKQNLREATEAFQRET 467 I RAV LA ++ F+ EV + + A+ K+NL++A E +R+ Sbjct: 1361 EIERAVTLAEPN-----TFIKPSDFS-EEVYRHIEYSKTIAMLSGKKNLKDAIEELERKL 1414 Query: 468 IRQALAQNHHNWAACARML 486 I Q+L + N A+ L Sbjct: 1415 ISQSLEKFQWNQTQAAKEL 1433 >UniRef50_A8UFP5 Sigma54 specific transcriptional regulator with PAS sensor, Fis family protein n=1 Tax=Flavobacteriales bacterium ALC-1 RepID=A8UFP5_9FLAO Length = 616 Score = 241 bits (616), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 136/324 (41%), Positives = 197/324 (60%), Gaps = 18/324 (5%) Query: 187 MIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAA 246 ++ P M + ++ VA +D VLI+GETGTGKELV++AIHEAS R+ PL+ +NC A Sbjct: 301 IVAEDPKMQNVLSLVKHVAPTDATVLINGETGTGKELVSRAIHEASNRSDKPLIRINCGA 360 Query: 247 LPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYG 306 +P ++ ESELFGH KGAFTGA S+R G+F +AD GT+FLDEIGE+ + LQ KLLRV+Q G Sbjct: 361 IPTNLIESELFGHKKGAFTGATSDRKGRFLLADKGTIFLDEIGEMPIELQPKLLRVIQEG 420 Query: 307 DIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVI 366 + VG ++V+VR++AAT+RDL + G+FR DL++RL+VFP+ VP LR R +DV Sbjct: 421 EFDPVGSSETIKVNVRIIAATHRDLLQHAADGKFREDLYYRLNVFPIEVPALRHRAEDVC 480 Query: 367 LLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARA-TRSGD 425 L+AG + V LS ++ L Y +PGNVREL++ I RA++++++ T + Sbjct: 481 LIAGEMINHFSKKLNKPMVELSDIDKSHLMDYHWPGNVRELQNLIERAIIISKSGTINIK 540 Query: 426 EVILEAQH-FAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWA---- 480 +VI + Q P TL + ++K ++E I +AL Q W Sbjct: 541 DVIPKMQSDEEHPPKTLKDKVYTSQELLK---------LEKENILKALKQTR--WKISGK 589 Query: 481 -ACARMLETDVANLHRLAKRLGLK 503 A +L+ L K LGL+ Sbjct: 590 NGAAELLQLPATTLASKIKVLGLE 613 >UniRef50_B3DV39 DNA-binding response regulator, NtrC family (Contains REC, AAA-type ATPase, and DNA-binding Fis domains) n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DV39_METI4 Length = 442 Score = 241 bits (616), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 138/326 (42%), Positives = 195/326 (59%), Gaps = 24/326 (7%) Query: 184 QTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLN 243 Q ++IG S M +++K I A D VLISG+TGTGKELVA+AIH S R P V +N Sbjct: 131 QEELIGESAAMRRVQKFIGFAACCDFPVLISGQTGTGKELVARAIHRHSARGNGPFVEVN 190 Query: 244 CAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVL 303 CAA PE++ E+E FGH KG+FTGA +R GKF A GTLFLDEI E+ L +QAKLL+ L Sbjct: 191 CAAFPEALFETEFFGHTKGSFTGAFKDRKGKFMEATGGTLFLDEIAEMPLTMQAKLLKAL 250 Query: 304 QYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGD 363 IQ VG + +DVR++AATN++L + V+ G+FR DLF+R+ V + +PPLRER Sbjct: 251 SENKIQPVGSETDYPIDVRIIAATNKNLLDLVMGGKFRDDLFYRIQVLQIELPPLRERNS 310 Query: 364 DVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARA--T 421 D++LLA YF E + G S+ + A + LL+ Y +PGNVR+LE+ I RA + +R Sbjct: 311 DILLLAEYFIE--KYFPGSSKKLTLAAQKALLE-YPWPGNVRQLENVIRRAGITSRGQLI 367 Query: 422 RSGDEVILEAQHFAFPEVTLPT---PEVAAVPVVKQNLREATEAFQRETIRQALAQNHHN 478 GD +++LPT P + ++ + A ++ I +AL ++ N Sbjct: 368 DVGD-----------LDISLPTDKEPGLNKEDFLQWDFFSAIAKLEKMLIEKALKESQGN 416 Query: 479 WAACARMLETDVANLHRLAKRLGLKD 504 AR+L N+HR L +K+ Sbjct: 417 RTEAARLL-----NIHRSLLYLKMKE 437 >UniRef50_C1A9W9 NtrC family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A9W9_GEMAT Length = 461 Score = 241 bits (616), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 143/317 (45%), Positives = 195/317 (61%), Gaps = 15/317 (4%) Query: 188 IGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAAL 247 IG S ++ + E VA +D VLI+GE+GTGKE+VA+ IH+ S R N + +NC AL Sbjct: 153 IGRSKSWLEVLRLAETVAPTDSTVLITGESGTGKEVVARYIHDLSARTDNGFMSINCGAL 212 Query: 248 PESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGD 307 PES+ ESELFGHVKG+FTGA+ +++G F A++GT FLDEIGE + + Q KLLR LQ + Sbjct: 213 PESLLESELFGHVKGSFTGAVKDKTGLFAAANHGTFFLDEIGETTPSTQVKLLRALQQRE 272 Query: 308 IQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVIL 367 + VG + VD RVLAATNRDL EE+ G FRADLF+RL+V + +PPLR+R DD+ + Sbjct: 273 VIPVGATESVSVDTRVLAATNRDLEEEIKRGGFRADLFYRLNVIAVHLPPLRQRADDIPV 332 Query: 368 LAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEV 427 LA F + + + VL+ GA + L Y +PGNVRELE+A+ RAV+L SG+ + Sbjct: 333 LAESFLARSATLRHEEQKVLNEGALDALMAYGWPGNVRELENALERAVILC----SGNTI 388 Query: 428 ILEAQHFAFPE-VTLPTPEVAAVPVVKQN--LREATEAFQRETIRQALAQNHHNWAACAR 484 + A PE VT E P+V + + EA +R I+ L N + A Sbjct: 389 SAD----ALPERVTARRAE----PLVSERAPVSPTLEAIERAYIQWVLQNEGGNKSRAAD 440 Query: 485 MLETDVANLHRLAKRLG 501 ML D + L+R R G Sbjct: 441 MLGIDPSTLYRKLARYG 457 >UniRef50_C4FI59 AAA family ATPase n=1 Tax=Sulfurihydrogenibium yellowstonense SS-5 RepID=C4FI59_9AQUI Length = 531 Score = 241 bits (616), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 136/324 (41%), Positives = 196/324 (60%), Gaps = 18/324 (5%) Query: 181 AVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLV 240 A ++++I S M + + VA + NVL+ GE+GTGK ++AK IH S R P V Sbjct: 223 ASNKSRLITKSSLMVYVLDIAKTVADTTANVLLEGESGTGKNVLAKYIHNQSSRRDKPFV 282 Query: 241 YLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLL 300 +NCAA+P+++ ESELFG+VKGAFTGA+ ++ GK E+AD GTLFLDEIGEL LQ+KLL Sbjct: 283 KINCAAIPDNLLESELFGYVKGAFTGAVKDKPGKVELADGGTLFLDEIGELPTYLQSKLL 342 Query: 301 RVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRE 360 ++Q + +R+GD + +VDVR++AATN+DL + V G+FR DL++RL V + VP LRE Sbjct: 343 HLIQEKEFERLGDTKTKKVDVRIIAATNKDLSQLVKEGKFREDLYYRLKVISIKVPALRE 402 Query: 361 RGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARA 420 R +D+ L YF + + +S A LL +Y +PGN+RELE+ I RAV+LA+ Sbjct: 403 RKEDIPFLINYFIDLYSKQYNKHIKGISPEAVRLLLNYDYPGNIRELENIIERAVILAKG 462 Query: 421 TRSGDEVILEAQHFAFPEVT-LPTPEVAAVPVVKQN-LREATEAFQRETIRQALAQNHHN 478 F EV+ LP V ++ QN L E E +++ I + L + N Sbjct: 463 --------------KFIEVSDLPDEIVYNTKILTQNDLDE--EIDEKQKILRVLESVNWN 506 Query: 479 WAACARMLETDVANLHRLAKRLGL 502 + A++L D L R K+ GL Sbjct: 507 KSKAAKILNIDRVTLWRKLKKYGL 530 >UniRef50_C7PLV9 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PLV9_CHIPD Length = 515 Score = 241 bits (615), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 146/341 (42%), Positives = 200/341 (58%), Gaps = 35/341 (10%) Query: 116 LPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLI----EQLESQNM 171 LPL N G L L + F ++ A L + A +L+ + L+ ++M Sbjct: 127 LPLRNHTNSFGFLCLLAKHHNTFPKSLQISVKRYAGLLSAATLKLMLLDALPQWLQEEDM 186 Query: 172 --------LPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKEL 223 L D P + V I L P + Q+++ VA +D VL++GETGTGKEL Sbjct: 187 GGDGAELLLYNDLLPAKLVSG---IALRPVIQQVRQ----VAPTDATVLLTGETGTGKEL 239 Query: 224 VAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTL 283 A+AIH +S R V +NCAALP + ESELFGH KGAFTGAI R GKFEMA+ GTL Sbjct: 240 FAEAIHLSSMRRQKAFVKINCAALPPQLIESELFGHEKGAFTGAIHRRIGKFEMAEGGTL 299 Query: 284 FLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRAD 343 FLDEIGEL L +QAKLLRV+Q +I+R+G + V+VR++AATNR L EEV GRFR D Sbjct: 300 FLDEIGELPLDMQAKLLRVIQEKEIERIGGTETIPVNVRIIAATNRTLEEEVRQGRFRQD 359 Query: 344 LFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGN 403 L++RL VFP+ +P LRER +D+ LL +F ++ G +++G+ L Y++PGN Sbjct: 360 LYYRLYVFPIHLPALRERREDIPLLLQHFARNAAMKYGKPIRHIASGSVLALMDYTWPGN 419 Query: 404 VRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTP 444 +RE+EH + RAV+ S DE P++T+ P Sbjct: 420 IREMEHMVERAVI------SSDE----------PQITIAVP 444 >UniRef50_C7LTG8 Sigma54 specific transcriptional regulator with PAS/PAC sensor, Fis family n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LTG8_DESBD Length = 806 Score = 241 bits (615), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 115/233 (49%), Positives = 168/233 (72%) Query: 186 QMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCA 245 ++IG S + + ++IE V+ + VL+ GETGTGK LVA+AIH S R ++ +NCA Sbjct: 499 EIIGQSDSIVNMFEQIEQVSPLNATVLLLGETGTGKGLVARAIHARSARKGRSMITVNCA 558 Query: 246 ALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQY 305 ALP ++ ESELFG +GAFTG+ + + G+FE+AD GT+FLDEIGE+ L LQ+KLLRV+Q Sbjct: 559 ALPANLIESELFGRERGAFTGSNAQQLGRFELADGGTIFLDEIGEMPLELQSKLLRVIQD 618 Query: 306 GDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDV 365 G+++R+G R ++VDVR++AA+NR+L++E+ GRFR DLF+RL+VFP+S+PPLR+R D+ Sbjct: 619 GEMERLGSPRTIKVDVRIIAASNRNLQDEIRKGRFREDLFYRLNVFPISIPPLRQRDGDI 678 Query: 366 ILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLA 418 LL +F + + G + + N LQ Y +PGNVRELE + RAV+ + Sbjct: 679 ALLINFFVAKFNKKTGKNIKTVPKNTLNALQEYHWPGNVRELESVVERAVITS 731 >UniRef50_Q12HA0 Sigma54 specific transcriptional regulator with PAS sensor, Fis family n=9 Tax=Proteobacteria RepID=Q12HA0_POLSJ Length = 604 Score = 241 bits (615), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 140/340 (41%), Positives = 197/340 (57%), Gaps = 21/340 (6%) Query: 180 EAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPL 239 EA M+G S ++ VA + VL +GE+G GKE A+ +H+ SPR P Sbjct: 262 EASAGDAMVGASSAFNAACHQLSRVARTSATVLFTGESGVGKEKFARMLHKISPRKDRPF 321 Query: 240 VYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKL 299 V +NCAA+PE++ ESELFG +GA+TGA +R G+FE A GTLFLDEIG LS Q KL Sbjct: 322 VAVNCAAIPETLIESELFGVERGAYTGASHSRPGRFERASGGTLFLDEIGSLSYVAQGKL 381 Query: 300 LRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLR 359 LR LQ G+++RVG R + VDVRV+AATN LR+ VL G+FR DLF RL+VFP+ +PPLR Sbjct: 382 LRALQEGEVERVGGTRSIAVDVRVVAATNEALRQAVLEGKFREDLFFRLNVFPIHLPPLR 441 Query: 360 ERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLAR 419 ER DD+ LL +F R + G + + A L +Y+FPGN+REL++ I RAV++A Sbjct: 442 ERRDDIPLLMNHFLNHYRRKHGCNTGGFTQAAVRSLLNYAFPGNIRELQNLIERAVIMAD 501 Query: 420 A--------------TRSGDEVILEAQ------HFAFPEVTLPTPEVAAVPVVKQNLREA 459 T S D + L + +FA P + A P ++ Sbjct: 502 MEGLIDVHHLFTSGETLSADIMTLRLKGSSATLNFAEPAGCAQALAI-ATPSSTAQAPQS 560 Query: 460 TEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKR 499 + +R+T+ +A++ + N +A AR+L T A L A++ Sbjct: 561 LDQTERDTLLRAISTSQGNLSAAARLLNTTRAKLAYRARK 600 >UniRef50_D0MGD9 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MGD9_RHOM4 Length = 472 Score = 241 bits (615), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 152/365 (41%), Positives = 206/365 (56%), Gaps = 19/365 (5%) Query: 141 FSDEEL--RLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLK 198 FS EEL R+ AALA EQ E++ P + A + +G P + +LK Sbjct: 113 FSTEELVERVQAALARRR-------EQQEARAKQPARTSQRRARPTIEYVGEHPMIRRLK 165 Query: 199 KEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFG 258 + + VAA+ V I GE+GTGKE++A+ IH+ S RA P V +NCA LP + ES LFG Sbjct: 166 EMLPRVAANKAPVFIQGESGTGKEILARLIHQMSDRAEGPFVAINCANLPRELVESHLFG 225 Query: 259 HVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLR 318 H KGAFTGAI + +G FE A+ GTL LDEI E+ LA+QAKLLRVLQ +IQ+VG + Sbjct: 226 HRKGAFTGAIEDMTGAFERAEGGTLLLDEITEVDLAIQAKLLRVLQEQEIQKVGSTEPRK 285 Query: 319 VDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQ-CR 377 +DVRV+A +NR+L E + G FR DL+HRLSVFPLSVPPLRER DV LL +F ++ C Sbjct: 286 IDVRVIATSNRNLSEAIAKGEFREDLYHRLSVFPLSVPPLRERMSDVPLLVAHFIKKYCE 345 Query: 378 LRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFP 437 L GL +S Y +PGNVR+LE+ + R V+L S + ++E + Sbjct: 346 L-YGLPPKKVSDALMERFMQYPWPGNVRQLENYVQRGVLL-----SAEREVIEVEDVFND 399 Query: 438 EVTLPTPEVAAVPVVKQNLR---EATEAFQRETIRQALAQNHHNWAACARMLETDVANLH 494 P K+ L + E +RE I +AL + ++N A+ L + Sbjct: 400 FFADAEPARQNASAEKEELLGRVQTIEDMEREMILRALKETNNNQQLAAQKLGISARTIR 459 Query: 495 RLAKR 499 KR Sbjct: 460 NKLKR 464 >UniRef50_C8X1R7 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X1R7_DESRD Length = 471 Score = 241 bits (615), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 142/322 (44%), Positives = 196/322 (60%), Gaps = 15/322 (4%) Query: 187 MIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAA 246 ++G S M ++ + AAS VLI GE+GTGKEL+A+AIH S +A P V +NC+A Sbjct: 152 IMGKSEVMQEVFSRVRAAAASRSTVLIQGESGTGKELIARAIHYNSDQADQPFVTVNCSA 211 Query: 247 LPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYG 306 L E++ ESELFGHVKGAFTGA+ +R+G+FE A G++FLDEIGELS +Q KLLRVLQ Sbjct: 212 LTETLLESELFGHVKGAFTGAVRDRAGRFEEAHRGSIFLDEIGELSQTIQVKLLRVLQER 271 Query: 307 DIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVI 366 +++RVGD + +D+RV+ AT+RDL E + G FR DL++RL VFP+++PPLR+R +D+ Sbjct: 272 EVERVGDSQTRTIDIRVIVATHRDLNELLAQGVFRQDLYYRLKVFPITLPPLRQRREDLP 331 Query: 367 LLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDE 426 LL +F + G L+ A L+ Y +PGNVRELE+AI A VL SG++ Sbjct: 332 LLVNHFIAKQNEATGKRVTGLAPEAMRLVFEYHWPGNVRELENAIEHAFVLT----SGEQ 387 Query: 427 VILEAQHFAFP-EVTLPTPE-----VAAVPVVKQNLREATEAFQRETIRQALAQNHHNWA 480 + Q P E+ P P A VP + R+ E RE + L N N A Sbjct: 388 I----QVNDLPAEIITPRPSPERAREAGVPRTAGS-RQHHEQPDREQLLALLEANQWNKA 442 Query: 481 ACARMLETDVANLHRLAKRLGL 502 A AR L + + K+ G+ Sbjct: 443 AVARQLGVSRTAVWKYMKKWGI 464 >UniRef50_A5G703 Two component, sigma-54 specific, transcriptional regulator, Fis family n=7 Tax=Geobacter RepID=A5G703_GEOUR Length = 453 Score = 241 bits (615), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 148/332 (44%), Positives = 193/332 (58%), Gaps = 23/332 (6%) Query: 179 FEAVKQTQMIGLSP--------GMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHE 230 F ++K + GL P M ++K I VA S VLI GE+GTGKELVA+ IH Sbjct: 128 FISLKDMERSGLPPDELIFSGSAMDAVRKMIYDVAPSTATVLIHGESGTGKELVARMIHL 187 Query: 231 ASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGE 290 S R + LNCAA+PE++ ESELFGH KGAFTGA+ R GKFE+A+ GT+FLDEIGE Sbjct: 188 LSKRKGAAFIPLNCAAIPENLLESELFGHEKGAFTGAMQARRGKFELAEGGTIFLDEIGE 247 Query: 291 LSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSV 350 + LQAKLLRVLQ +RVG +R +VRV+AATNRDL EV RFR DLF+RL+V Sbjct: 248 MPALLQAKLLRVLQERVFERVGGSMQIRTNVRVIAATNRDLNREVAEKRFRDDLFYRLNV 307 Query: 351 FPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHA 410 FP++VPPLR R D + LA YFC + ++ G ++ A L++ Y +PGN+REL++ Sbjct: 308 FPITVPPLRARLDALAGLARYFCARFAVKTGKKLKGINPEALRLMKAYHWPGNIRELQNV 367 Query: 411 IHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQ 470 I R V+LAR + E+ A E T P+V + +++N I + Sbjct: 368 IERGVILAREELTAPEL---PAMIAGKE-TEGGPKVGILKDIERN-----------CILE 412 Query: 471 ALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 AL N N A L L K LGL Sbjct: 413 ALKNNRGNRRMAAETLGISKRTLQYRLKELGL 444 >UniRef50_B1ZR63 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZR63_OPITP Length = 490 Score = 241 bits (614), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 126/269 (46%), Positives = 175/269 (65%), Gaps = 4/269 (1%) Query: 187 MIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAA 246 ++G SP M +L++ IE VA +D VLI+GE+GTGKE+VA+ + SPR + +NCAA Sbjct: 142 LVGRSPAMIRLRQIIERVAPTDATVLITGESGTGKEMVAREFYRRSPRRSQAFIKVNCAA 201 Query: 247 LPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYG 306 + E++ ESE FGH +GAFTGA R G+FE+A GTL LDE+ E+ LQAKLLRVLQ Sbjct: 202 ISENLIESEFFGHERGAFTGATERREGRFELAHQGTLLLDEVSEIPANLQAKLLRVLQER 261 Query: 307 DIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVI 366 + +RVG R ++V+VR++A +NRDL V G FR DL++RL+VFP+ VP LRER +D+ Sbjct: 262 EFERVGGSRTIKVNVRIIATSNRDLMRHVEKGEFRQDLYYRLNVFPVHVPALRERPEDIA 321 Query: 367 LLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDE 426 LLA +F + + G+ + AR L Y +PGNVREL++ + RAV+L+ R+ Sbjct: 322 LLADHFLRRFARKHGVKVTGFADSARAALIGYRWPGNVRELQNTVERAVILSETGRAVTA 381 Query: 427 VILEAQHFAFP-EVTL---PTPEVAAVPV 451 L P E+ L P PEV A+PV Sbjct: 382 AALGLPGDFLPGELPLEPAPAPEVPALPV 410 >UniRef50_B8FIT8 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FIT8_DESAA Length = 588 Score = 241 bits (614), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 135/317 (42%), Positives = 196/317 (61%), Gaps = 13/317 (4%) Query: 187 MIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAA 246 +IG S M + + +E +A + VLI+GE+GTGKELVAKA+H RA P V +NC+A Sbjct: 279 IIGASHKMQAVYQLLENLADFETTVLITGESGTGKELVAKALHHTGSRAFKPFVSVNCSA 338 Query: 247 LPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYG 306 L E++ ESELFGHVKGAFTGAI + G+F+ A GTL LDEIG++S +Q KLLRVLQ Sbjct: 339 LAENLLESELFGHVKGAFTGAIRDYQGRFQAAHTGTLLLDEIGDISPRIQLKLLRVLQER 398 Query: 307 DIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVI 366 + +RVGD + ++VDVRV+A TN+DL+E+V G FR DL++RL+V + +PPLRER +D+ Sbjct: 399 EFERVGDVQPIKVDVRVIACTNQDLKEKVGLGEFREDLYYRLNVMEIKLPPLRERREDIP 458 Query: 367 LLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDE 426 LLA +F + + ++ +S N +Y +PGNVRELEH+I RA VL R + Sbjct: 459 LLADHFTARFEKKFNITIPGVSDKVMNAFMNYHWPGNVRELEHSIERATVLCR------D 512 Query: 427 VILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARML 486 ++ +H +P A + L++ A + I AL + N A AR+L Sbjct: 513 KMISLEH-------IPGEIAEAYSLSGPRLKKQPAADEPNEIIDALKRTGWNKAKAARLL 565 Query: 487 ETDVANLHRLAKRLGLK 503 ++R ++ G++ Sbjct: 566 GVSRKTIYRKIEKYGIQ 582 >UniRef50_C6XZM7 Sigma-54 factor interaction domain-containing protein n=23 Tax=Bacteroidetes RepID=C6XZM7_PEDHD Length = 468 Score = 241 bits (614), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 142/337 (42%), Positives = 203/337 (60%), Gaps = 23/337 (6%) Query: 183 KQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYL 242 K ++G S + ++K+ IE VA ++ VLI+G G+GKELVA+ +HE S RA +PL+ + Sbjct: 135 KTRDILGSSENIGKIKETIERVAPTEARVLITGANGSGKELVARWLHEKSQRAESPLIEV 194 Query: 243 NCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRV 302 NCAA+P + ESELFGH KG+FT A+ R GKFE+A+ GTLFLDEIG++SL+ QAK+LR Sbjct: 195 NCAAIPSELIESELFGHEKGSFTSAVKQRIGKFELANGGTLFLDEIGDMSLSAQAKVLRA 254 Query: 303 LQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERG 362 LQ I RVG ++ L V+VRVLAATN+DL +E+ AG FR DL+HRL+V + VP L ER Sbjct: 255 LQEHKITRVGGEKELEVNVRVLAATNKDLLKEIEAGNFRMDLYHRLNVINIHVPHLTERT 314 Query: 363 DDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATR 422 +D+ +A F E+ G+ +S GA LQ + GNVREL + I R ++L+ Sbjct: 315 EDIPEIALNFLEEICRDYGMPVKKISDGAMTALQALPWTGNVRELHNMIERLIILS---- 370 Query: 423 SGDEVILEAQHFAFPEVTLPTPEVAAV------------PVVK----QNLREATEAFQRE 466 D+VI E AF T + AV P V N ++ + +RE Sbjct: 371 --DKVITENDVIAFANPGGGT-NIGAVNTANGQSGLAHGPTVDYDKFNNFQDYKDHAERE 427 Query: 467 TIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 I+ L +N+ N + A +E ++L+ ++ GLK Sbjct: 428 FIKFKLEKNNWNVSKTADDIEIQRSHLYSKIEKFGLK 464 >UniRef50_Q023H8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q023H8_SOLUE Length = 465 Score = 240 bits (613), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 123/266 (46%), Positives = 183/266 (68%), Gaps = 11/266 (4%) Query: 157 LSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEI---VAASDLNVLI 213 L + LIE+++ + FEA+ +G S +QL + +++ VA++D +LI Sbjct: 119 LEHHRLIEEVQVLRTALDEKYGFEAI-----VGSS---SQLMRALDVAARVASTDATILI 170 Query: 214 SGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSG 273 GETGTGKELVAKAIH S R P + +NC A+P+ + ESELFGHVKG+FTGA++++ G Sbjct: 171 YGETGTGKELVAKAIHLRSSRRDRPFITINCGAIPKELLESELFGHVKGSFTGALTHKKG 230 Query: 274 KFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLRE 333 K EMAD GT+ LDEIGE+ L LQ ++LR++Q +I++VG +VDVR++AAT+R+L Sbjct: 231 KVEMADGGTVLLDEIGEMPLELQVRILRLIQEREIEKVGATSPTKVDVRIVAATHRELAG 290 Query: 334 EVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARN 393 V AG FR DL++RL V P+++PPLRER D+++L +F E+CR++ +++S Sbjct: 291 MVKAGTFREDLYYRLLVVPINLPPLRERTGDILILVQHFLEKCRMKHSRPNLMMSTDLLP 350 Query: 394 LLQHYSFPGNVRELEHAIHRAVVLAR 419 +YS+PGNVR+LE+A+ R V+LAR Sbjct: 351 YFTNYSWPGNVRQLENAVERLVLLAR 376 >UniRef50_P09434 Nif-specific regulatory protein n=7 Tax=Rhodobacter RepID=NIFA_RHOCA Length = 579 Score = 240 bits (613), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 130/287 (45%), Positives = 184/287 (64%), Gaps = 8/287 (2%) Query: 178 PFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVN 237 P V ++G SP + ++ +I+ VA++ + VL+ GE+GTGKEL A+A+H SPRA Sbjct: 217 PAAPVSLDGIVGSSPAIAEVVAQIKRVASTRMPVLLRGESGTGKELFARAVHAQSPRAKG 276 Query: 238 PLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQA 297 P + +NCAAL E++ ESELFGH KGAFTGA + + G+FE+AD GTLFLDEIGE+S A Q+ Sbjct: 277 PFIRVNCAALSETLLESELFGHEKGAFTGATALKKGRFELADGGTLFLDEIGEISPAFQS 336 Query: 298 KLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPP 357 KLLRVLQ G+ +RVG + ++VD R++AATNRDL + V G+FRADL+ R+ V P+ +PP Sbjct: 337 KLLRVLQEGEFERVGGAKTIKVDTRIVAATNRDLEDAVARGQFRADLYFRICVVPIVLPP 396 Query: 358 LRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHR---- 413 LR R D+ LA F ++ +Q + V +A A + + FPGNVRELE+ ++R Sbjct: 397 LRNRKSDIKPLAQLFLDRFN-KQNATNVKFAADAFDQICRCQFPGNVRELENCVNRAAAL 455 Query: 414 ---AVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLR 457 A+VLA L A+ F + T P +A V+ +R Sbjct: 456 SDGAIVLAEELACRQGACLSAELFRLQDGTSPIGGLAVGRVITPTVR 502 >UniRef50_B8DLL1 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfovibrio RepID=B8DLL1_DESVM Length = 350 Score = 240 bits (613), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 121/232 (52%), Positives = 165/232 (71%) Query: 187 MIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAA 246 +IG S + + + + VA +D VL++GE+GTGKEL+ +A+H S R P V +NC A Sbjct: 8 IIGQSTSLRDVFRILAKVAPTDSTVLVTGESGTGKELLVRALHSNSQRRSMPFVPINCGA 67 Query: 247 LPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYG 306 +P+ + ESELFGH KGAFT AI +R G+FE+AD GT+FLDEIGE+ L LQ K+LRVLQ Sbjct: 68 IPKELLESELFGHEKGAFTHAIRSRPGRFELADGGTIFLDEIGEMDLTLQVKILRVLQEK 127 Query: 307 DIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVI 366 +I+RVG +VDVR++AATNRDL EV AGRFR DL++RL+V PL +P LRERG D++ Sbjct: 128 EIERVGGAGVKKVDVRIVAATNRDLEREVAAGRFREDLYYRLNVIPLHLPALRERGGDIL 187 Query: 367 LLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLA 418 +LA +F + R+G + L+ R +L YS+PGNVRELE+ + R +LA Sbjct: 188 VLAEHFMRRFCERKGRRCLALAPDTRKVLAAYSWPGNVRELENFMERLSILA 239 >UniRef50_B0TAR7 Sigma-54-dependent transcriptional activator (Nifa/ntrc family) n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TAR7_HELMI Length = 767 Score = 240 bits (613), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 119/217 (54%), Positives = 153/217 (70%) Query: 202 EIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVK 261 E A VLI GE+GTGKELVA+ IHE+ PR+ P + +NCAA+PE++ ESELFGH K Sbjct: 409 EKAAEGPATVLIRGESGTGKELVAEGIHESGPRSKGPFIRVNCAAIPETLLESELFGHEK 468 Query: 262 GAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDV 321 GAFTGAI + GKFE+A GTLFLDEIGEL +QAKLLRVLQ +I R+G + VDV Sbjct: 469 GAFTGAIKRKLGKFELAHKGTLFLDEIGELDKGMQAKLLRVLQEKEISRIGGEETFTVDV 528 Query: 322 RVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQG 381 +++AATN+DL V GRFR DL++RL+V P+ +PPLRER +D+ LL +F +Q QG Sbjct: 529 KIIAATNQDLERLVAEGRFREDLYYRLNVIPILLPPLRERKEDIPLLVEHFLQQTGREQG 588 Query: 382 LSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLA 418 + + + A L HYS+PGNVREL + I R V L+ Sbjct: 589 KALRGIHSDALEALMHYSWPGNVRELANLIERVVTLS 625 >UniRef50_A5G4X7 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Geobacter uraniireducens Rf4 RepID=A5G4X7_GEOUR Length = 726 Score = 240 bits (613), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 121/233 (51%), Positives = 166/233 (71%) Query: 186 QMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCA 245 Q+IG S + ++ + +E VA++D VLI GETGTGKELVA+AI E S R P+V +NCA Sbjct: 415 QIIGQSAALDKVLRLVEQVASTDSTVLICGETGTGKELVARAIQELSLRRNKPIVKVNCA 474 Query: 246 ALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQY 305 +LP ++ ESELFG KGA+TGA++ ++G+FE+AD T+FLDEI E+S LQAKLLRVLQ Sbjct: 475 SLPAALVESELFGREKGAYTGALTRQAGRFEVADGATIFLDEISEMSPELQAKLLRVLQE 534 Query: 306 GDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDV 365 G +R+G + + VDVRV+AATNR+L EEV G FR DL++RL+VF + VPPLRER +D+ Sbjct: 535 GQFERLGSTKTIHVDVRVIAATNRNLAEEVKKGTFREDLYYRLNVFQIVVPPLRERAEDI 594 Query: 366 ILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLA 418 LLA F + + G ++ N LQ+Y +PGNVREL + I V+++ Sbjct: 595 PLLAWAFVHEFNEKMGKKINRIAKSDMNALQNYHWPGNVRELRNVIEYGVIVS 647 >UniRef50_A5G9U3 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Deltaproteobacteria RepID=A5G9U3_GEOUR Length = 466 Score = 240 bits (613), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 136/302 (45%), Positives = 183/302 (60%), Gaps = 3/302 (0%) Query: 185 TQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNC 244 +IG S M L + IE VA SD VLI GE+GTGKELVA+AIH+ S RA V +NC Sbjct: 142 NNIIGESDRMLSLFEMIEKVAGSDSTVLIQGESGTGKELVARAIHDLSNRATKNFVPVNC 201 Query: 245 AALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQ 304 AA+P+ + ESELFGHVKG+FTGA++ R G+FEMAD GTLFLDEIG++ LQ KLLRVLQ Sbjct: 202 AAIPDDLLESELFGHVKGSFTGAVATRIGRFEMADRGTLFLDEIGDMKPNLQVKLLRVLQ 261 Query: 305 YGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDD 364 +++ VG R +VDVR++AATN++L V + FR DL++RLSV P+++PPLRER D Sbjct: 262 NKELEPVGAARTKKVDVRIIAATNQNLEHLVASKIFREDLYYRLSVIPITLPPLRERKTD 321 Query: 365 VILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSG 424 + LL F E+ + ++L ++ +PGNVRELE+ + R V+L SG Sbjct: 322 IPLLLNNFLEKFNRNKQRKVQSFDKNTMDILCNFDWPGNVRELENLVERLVILK---GSG 378 Query: 425 DEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACAR 484 + + P E +P L A E F+ + I QAL + N A Sbjct: 379 TITFQDLPEKYRGIKSAPKSERLTLPDTGFCLNSAVEDFENQLILQALEKTGGNKKEAAT 438 Query: 485 ML 486 +L Sbjct: 439 LL 440 >UniRef50_B8FCN8 Transcriptional regulator, NifA subfamily, Fis Family n=2 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FCN8_DESAA Length = 529 Score = 240 bits (613), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 138/315 (43%), Positives = 191/315 (60%), Gaps = 6/315 (1%) Query: 110 VHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQ 169 V + + L L LIG LTL G + ++ RL+ A ALSN++ +L Sbjct: 113 VQSALILDLVIEGRLIGVLTLHGEVGKTYTARHEQLFRLLNEPFAVALSNSMRQRELNKL 172 Query: 170 NMLPGDATPF-----EAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELV 224 L D P+ EA + +++G G+ + + VA + VL+ GETG GKEL+ Sbjct: 173 KELLTDDNPYFQENEEAFSENEVVGADYGLRGVMEMARQVAPLESPVLLLGETGVGKELI 232 Query: 225 AKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLF 284 A A+H ASPR PL+ +NC A+P+++ +SELFGH KGAFTGA S + G+FE AD GT+F Sbjct: 233 ASAVHRASPRRNGPLIKVNCGAIPDTLIDSELFGHEKGAFTGASSMKRGRFERADEGTIF 292 Query: 285 LDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADL 344 LDE+ ELS Q +LLRVLQ +I+RVG VD+RV+AAT+R+L V GRFR DL Sbjct: 293 LDEVAELSPEAQVRLLRVLQEKEIERVGAAETTHVDIRVIAATHRNLDGLVSMGRFRQDL 352 Query: 345 FHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRV-VLSAGARNLLQHYSFPGN 403 RL VFP+ +PPLR+R D+ L +F L L + L+ GA + L YS+PGN Sbjct: 353 LFRLKVFPIVIPPLRDRKGDIPSLVQHFVRIKSLDMKLGTIPPLAPGAMDKLMDYSWPGN 412 Query: 404 VRELEHAIHRAVVLA 418 VRELE+A+ RA++L+ Sbjct: 413 VRELENAVERALILS 427 >UniRef50_A7H973 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Anaeromyxobacter sp. Fw109-5 RepID=A7H973_ANADF Length = 602 Score = 240 bits (613), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 133/285 (46%), Positives = 184/285 (64%), Gaps = 15/285 (5%) Query: 141 FSDEELRLIAALAAGA--LSNALLIEQLESQNM-LPGD---ATPFEAVKQTQMIGLSPGM 194 F DE RL A G E++ ++N+ L G+ ++ FE +++G S G+ Sbjct: 240 FRDERGRLTRWYATGTDIEDRKRAEEKVRNENLALRGEIDGSSMFE-----EIVGSSEGL 294 Query: 195 TQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAES 254 ++ ++ VA +D VLI GETGTGKEL+A+AIH S R+ + +NCAA+P S+ S Sbjct: 295 RRVLAQVAKVAPTDSTVLILGETGTGKELIARAIHRQSSRSTQAFIRVNCAAIPSSLITS 354 Query: 255 ELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDD 314 ELFGH KGAFTGA+ R+G+FE A+ GT+FLDE+G+L+ Q LLRVLQ + +R+G Sbjct: 355 ELFGHEKGAFTGAVQRRTGRFESANGGTIFLDEVGDLTAETQIALLRVLQEREFERIGSS 414 Query: 315 RCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCE 374 R + VDVRVLAAT+RDL V AG FR DLF+RL+VFPL +PPLRER DD+ LLA Y Sbjct: 415 RPISVDVRVLAATHRDLEAAVEAGTFRQDLFYRLNVFPLQIPPLRERRDDIPLLAEYLI- 473 Query: 375 QCRLRQGLSRVVLSAGARNL--LQHYSFPGNVRELEHAIHRAVVL 417 R + + + + G R L + Y +PGNVREL++ + RAV+L Sbjct: 474 -ARYARTAGKSIRNIGKRTLESFRAYDWPGNVRELQNVVERAVIL 517 >UniRef50_B4UGS2 Two component, sigma54 specific, transcriptional regulator, Fis family n=6 Tax=Bacteria RepID=B4UGS2_ANASK Length = 501 Score = 240 bits (612), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 138/319 (43%), Positives = 193/319 (60%), Gaps = 8/319 (2%) Query: 187 MIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAA 246 M+G SP M +L+++I VA + VL+ GE+GTGKELVA +H S RA P V +NCAA Sbjct: 166 MLGESPAMRKLREDIGKVAPTSGRVLVLGESGTGKELVAAEVHRQSRRADGPFVKVNCAA 225 Query: 247 LPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYG 306 +P + ESELFGH KG+F+GA + R G+FE+A GTLFLDEIG++ L+ QAK+LR LQ G Sbjct: 226 IPSELIESELFGHEKGSFSGAAARRRGQFEVAHGGTLFLDEIGDMGLSAQAKVLRALQTG 285 Query: 307 DIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVI 366 ++ RVG ++ VDVR++AATN+DL EEV G FR DLF RL+V PL+VPPLR+R DDV Sbjct: 286 EVVRVGSEKAFTVDVRIIAATNKDLEEEVRNGTFREDLFFRLNVVPLTVPPLRDRLDDVP 345 Query: 367 LLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLA--RATRSG 424 +LA F + GL + + L+ + +PGNVREL + R V+++ R T + Sbjct: 346 VLAERFFQLATRENGLRPKPVDPAVYDRLRQHRWPGNVRELRNVCERMVIMSGERITAAD 405 Query: 425 -DEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACA 483 E + P + VP L+E + +R+ I L ++ N A Sbjct: 406 VPETVGPRAAPPPPPGSADLSRYGEVP-----LKELRDLVERDYILSRLEEHDWNITQAA 460 Query: 484 RMLETDVANLHRLAKRLGL 502 + L + NLH+ K+ GL Sbjct: 461 QALGVERTNLHKKIKQHGL 479 >UniRef50_Q30XH6 Putative transcriptional regulator, Fis family n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q30XH6_DESDG Length = 589 Score = 240 bits (612), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 142/324 (43%), Positives = 200/324 (61%), Gaps = 18/324 (5%) Query: 187 MIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAA 246 MIG S M + + +E +A +D VL++GE+GTGKELVA A+H + RA P V +NC+A Sbjct: 276 MIGRSSVMRGVFRLVESLADTDTTVLVTGESGTGKELVADALHHSGARAQGPFVKVNCSA 335 Query: 247 LPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYG 306 L E++ ESELFGHV+GAFTGA +R+G+ +MA GTLFLDEIG++S ++Q KLLRVLQ Sbjct: 336 LSETLLESELFGHVRGAFTGATKDRTGRIQMAHGGTLFLDEIGDISPSVQLKLLRVLQEK 395 Query: 307 DIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVI 366 +I+RVG+ R ++VDVRV+AATN+ LR V G+FR DL++RL V + +P LRER +D+ Sbjct: 396 EIERVGEGRPVKVDVRVVAATNKSLRALVARGKFREDLYYRLKVVEVHLPALRERREDIP 455 Query: 367 LLAGYFCEQCRLRQGLSRVV--LSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSG 424 LLA +F E+ + R V L + A+ LL Y +PGNVREL HA+ A ++A G Sbjct: 456 LLAEHFIEE--FNEHFHRRVSGLDSSAQQLLVQYDWPGNVRELRHAVEHAFIMA-----G 508 Query: 425 DEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLRE------ATEAFQRETIRQALAQNHHN 478 VI A A P + + +A LR A A ++ + AL + N Sbjct: 509 GNVIPAA---ALPAELMQSGRFSAQSAGTGALRHDAPDAAAQGAEWKQRLSAALKETGGN 565 Query: 479 WAACARMLETDVANLHRLAKRLGL 502 A AR+L ++R + LG+ Sbjct: 566 KAKAARLLGISRQTMYRRLRELGM 589 >UniRef50_C1SGB7 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SGB7_9BACT Length = 473 Score = 240 bits (612), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 130/273 (47%), Positives = 178/273 (65%), Gaps = 5/273 (1%) Query: 162 LIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGK 221 +IE+L + + + P K+ I S M QL VAAS+ VLI+GE+GTGK Sbjct: 112 VIEELVRRVLEIEETAPAVKRKKNTAIFRSAFMAQLFSLARDVAASEATVLITGESGTGK 171 Query: 222 ELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNG 281 E+ A+ IHE S R+ V +NCAALPE++ ESELFG+ KGAFTGA++ + GKFE+AD G Sbjct: 172 EVFARYIHENSNRSSGAFVAVNCAALPENLMESELFGYEKGAFTGAVNRKPGKFELADGG 231 Query: 282 TLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFR 341 T+ LDE+GE+ L LQAKLLRVLQ +++R+G + +++VR+LA TN+ L++EV G FR Sbjct: 232 TILLDELGEIPLHLQAKLLRVLQEKEVERLGGTKPFKINVRILATTNKVLKKEVDEGNFR 291 Query: 342 ADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFP 401 DL++RL+V + +PPLRER +D++ LA +F E+ G ++ A L Y +P Sbjct: 292 EDLYYRLNVISIELPPLRERKEDIMELATFFAEKYAQINGKGSCKMTDDAVKALLDYDWP 351 Query: 402 GNVRELEHAIHRAVVLARATRSGDEVILEAQHF 434 GNVRELEH I RAVVL R D VI E F Sbjct: 352 GNVRELEHTIERAVVLCR-----DGVISERNLF 379 >UniRef50_Q1CWG7 Sigma-54 dependent DNA-binding response regulator n=6 Tax=Bacteria RepID=Q1CWG7_MYXXD Length = 477 Score = 240 bits (612), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 148/322 (45%), Positives = 195/322 (60%), Gaps = 16/322 (4%) Query: 183 KQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYL 242 Q M+ S M +++ IE VA S NVL++GE GTGKE+VA+ IH S R+ V + Sbjct: 168 NQLAMVSESRSMQPVRRLIERVAPSGANVLVTGEHGTGKEVVARLIHGGSTRSERAFVAV 227 Query: 243 NCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRV 302 N L E V ESELFGHVKGAFT A S+R G FE+AD GTLFLDEIG + L+ QAKLLRV Sbjct: 228 NSGGLSEGVFESELFGHVKGAFTDAKSDRIGCFELADGGTLFLDEIGNMPLSQQAKLLRV 287 Query: 303 LQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERG 362 LQ G++ VG + RVDVRV++ATN DL V GRFR DL +RL+ + +PPLRER Sbjct: 288 LQTGELHPVGSSKTRRVDVRVVSATNVDLSRAVAEGRFREDLLYRLNTVEVQLPPLRERR 347 Query: 363 DDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATR 422 +D+ LLA +F + R G V LS+ A L Y++PGNVRELEHA+ RA+++A Sbjct: 348 EDIPLLAAHFLAEQGRRYGRPNVRLSSEALEALLAYAWPGNVRELEHAVERAMLMA---- 403 Query: 423 SGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREAT-EAFQRETIRQALAQNHHNWAA 481 SGDEV E ++ L + L E T E +R I +ALA++ N + Sbjct: 404 SGDEVTQE-------DLLLKRAGREGMA----RLEEMTLEEVERYLIERALARHEGNVSE 452 Query: 482 CARMLETDVANLHRLAKRLGLK 503 A+ L + L+R + G+K Sbjct: 453 AAKGLGLSRSALYRRLQYYGIK 474 >UniRef50_A0LIA2 Sigma54 specific transcriptional regulator, Fis family n=7 Tax=Proteobacteria RepID=A0LIA2_SYNFM Length = 1139 Score = 240 bits (612), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 119/235 (50%), Positives = 167/235 (71%) Query: 187 MIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAA 246 ++ SP M Q+ +E VA +D VLI+GETGTGKEL+A+A+H S R PLV +NCA+ Sbjct: 834 IVARSPAMRQVLLRVEQVAPTDSTVLITGETGTGKELIARAVHNLSARKGRPLVTVNCAS 893 Query: 247 LPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYG 306 LP ++ ESELFG KGA+TGA+S +G+FE+AD GTLFLDE+GEL LQAK+LRVL+ G Sbjct: 894 LPPTLMESELFGREKGAYTGALSRMAGRFEVADGGTLFLDEVGELPPELQAKMLRVLEEG 953 Query: 307 DIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVI 366 +R+G + L V+VR+LAATNRDL + V AGRFR DL++RL+VFP+++PPLRER +D+ Sbjct: 954 RFERLGSTKSLHVNVRILAATNRDLAQLVQAGRFRRDLYYRLNVFPIAIPPLRERPEDIP 1013 Query: 367 LLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARAT 421 L F Q R G + + + L+ +++PGNVREL + I A++++ + Sbjct: 1014 PLVWAFIHQFEKRMGKHVQRVLKRSMDALERHAWPGNVRELRNVIEHAMIVSSGS 1068 >UniRef50_B8JEK1 Sensor protein n=14 Tax=cellular organisms RepID=B8JEK1_ANAD2 Length = 1079 Score = 239 bits (611), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 145/327 (44%), Positives = 187/327 (57%), Gaps = 20/327 (6%) Query: 186 QMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCA 245 +++G +P M ++ +E VA +D VL+ GETGTGKELVA+AIH SPR P V +NC Sbjct: 759 EIVGTAPAMREVFAMVEQVAPADATVLLRGETGTGKELVARAIHRRSPRRDRPFVAVNCT 818 Query: 246 ALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQY 305 A+P+ + ESE FGH KGAFTGA++ R G+FE AD TLFLDE+G+L LA+QAKLLRVLQ Sbjct: 819 AIPKDLMESEFFGHEKGAFTGAVARRVGRFEQADGSTLFLDEVGDLDLAIQAKLLRVLQE 878 Query: 306 GDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDV 365 +I RVG L+VDVR++AATNRDL V GRFR DLF+RL+V PL +PPLRER D+ Sbjct: 879 QEITRVGARDPLKVDVRIVAATNRDLEALVHEGRFRDDLFYRLNVIPLRLPPLRERPQDL 938 Query: 366 ILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGD 425 L +F R G + V + Y +PGNVREL + RAV++ A Sbjct: 939 PALLEHFLRSFAQRYGRTSPVPPPDLLAAARAYPWPGNVRELRNLCERAVLMGWAA---- 994 Query: 426 EVILEAQHFAFPEVTLPTPEV-AAVPV--------VKQNLREATEAFQRETIRQALAQNH 476 A F P P+ A VPV +Q L E F+RE + + L + Sbjct: 995 ----VAPIFGAGAGVTPRPDAGAGVPVDTSLPLLEARQRL---VERFEREYLTRLLKERR 1047 Query: 477 HNWAACARMLETDVANLHRLAKRLGLK 503 AR NL+ K GL Sbjct: 1048 GRIGEVARAAGIAERNLYEKMKAYGLS 1074 >UniRef50_B3E8H3 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Bacteria RepID=B3E8H3_GEOLS Length = 451 Score = 239 bits (611), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 124/227 (54%), Positives = 156/227 (68%) Query: 194 MTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAE 253 M Q++ I VA + VLISGE+GTGKEL A+ IH ASPR P V LNCAA+PE++ E Sbjct: 153 MQQVRTLIADVAPTQATVLISGESGTGKELAARMIHRASPRRDAPFVALNCAAIPETLLE 212 Query: 254 SELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGD 313 SELFGH KGAFTGA R GKFE+A GTLFLDEIGEL LALQ+K LRVLQ +RVG Sbjct: 213 SELFGHEKGAFTGATQARQGKFELASGGTLFLDEIGELPLALQSKFLRVLQERVFERVGG 272 Query: 314 DRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFC 373 +R LR DVR++AATNRDL EEV RFR DL++RL VFP+ +P LR+R D + +L Y Sbjct: 273 NRELRADVRIIAATNRDLEEEVRVRRFREDLYYRLHVFPIHLPALRDRRDGLPVLVRYLL 332 Query: 374 EQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARA 420 + ++ G + A + Y +PGN+REL++ I RAV+L + Sbjct: 333 RRAAIQTGREVQDIEQQALAAVAEYGWPGNIRELQNVIERAVILCKG 379 >UniRef50_Q1D552 Sigma-54 dependent DNA-binding reponse regulator Nla6 n=8 Tax=Cystobacterineae RepID=Q1D552_MYXXD Length = 484 Score = 239 bits (611), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 135/315 (42%), Positives = 197/315 (62%), Gaps = 10/315 (3%) Query: 185 TQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNC 244 + +I S GM ++ + +E VA S +V ISGE+GTGKE+V++A+H S R P + +NC Sbjct: 141 SDLIAQSVGMRKVIELVEKVAPSKASVSISGESGTGKEVVSRAVHNLSLRRDKPFIAINC 200 Query: 245 AALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQ 304 A++P ++ ESELFGH +GAFTGA R G FEMA GTLFLDE+GE+ + LQAKLLRVL+ Sbjct: 201 ASIPATLIESELFGHERGAFTGADQRRPGVFEMAHGGTLFLDELGEIPIELQAKLLRVLE 260 Query: 305 YGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDD 364 G ++R+G + VDVRVL ATNRDL++E+ GRFR DL+ RL+VF + +PPLRER DD Sbjct: 261 EGKLRRLGGKVEIEVDVRVLCATNRDLKQEIKNGRFREDLYFRLNVFQIHLPPLRERRDD 320 Query: 365 VILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSG 424 V +L +F ++ R G + A +L++Y +PGN+REL +A+ RAV+L Sbjct: 321 VPILVQHFVDKFRGDSGKRVSGVHPEAMEVLKNYDWPGNIRELRNAVERAVILC------ 374 Query: 425 DEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACAR 484 D ++ +H P++ +PE + + +A +RE I +L +N +N A A Sbjct: 375 DGELITREHLP-PDMAGKSPERH---TFRLPFGLSLDAVEREYILGSLQRNGNNKARTAE 430 Query: 485 MLETDVANLHRLAKR 499 +L L+ R Sbjct: 431 VLGVSEKTLYNKLNR 445 >UniRef50_Q1D4K8 Sigma-54 dependent DNA-binding response regulator n=3 Tax=Myxococcus RepID=Q1D4K8_MYXXD Length = 471 Score = 239 bits (610), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 122/234 (52%), Positives = 166/234 (70%) Query: 187 MIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAA 246 +IG SP + + I A + VLI GE+GTGKEL+A+A+H+ SPR P + ++CAA Sbjct: 145 IIGESPQLQGIYDVIRRAAGTRATVLILGESGTGKELIAQALHQESPRKDKPFIRVHCAA 204 Query: 247 LPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYG 306 L E++ ESELFGH KG+FTGA++ + G+FE+AD GTLFLDEIGE+S A+Q KLLRVLQ Sbjct: 205 LSENLLESELFGHEKGSFTGALARKEGRFELADGGTLFLDEIGEISPAVQVKLLRVLQQR 264 Query: 307 DIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVI 366 + +RVG + L+VDVR++AAT+RDL EV AGRFR DL++RL+V +++PPLR+R DV Sbjct: 265 EFERVGGTQTLKVDVRIVAATHRDLVAEVKAGRFREDLYYRLNVVSVTLPPLRDRKSDVP 324 Query: 367 LLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARA 420 L +F E+ G L+ G L + +PGN+RELE+AI RAVVLA+ Sbjct: 325 ALVNHFLEKYSDSYGKQVRGLAPGTLQALLSHDWPGNIRELENAIERAVVLAQG 378 >UniRef50_A5G2R6 Two component, sigma54 specific, transcriptional regulator, Fis family n=23 Tax=Bacteria RepID=A5G2R6_ACICJ Length = 472 Score = 239 bits (610), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 143/336 (42%), Positives = 200/336 (59%), Gaps = 30/336 (8%) Query: 180 EAVKQTQMIGLSP---------GMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHE 230 E + + M+G SP M + + IE +A + VL+ GE+GTGKE++A+A+H+ Sbjct: 135 ENRRLSNMVGPSPLPRVIAGSETMLKTCRTIEKLAPATAPVLLLGESGTGKEILARALHD 194 Query: 231 ASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGE 290 PRA P + +NC A+PE + ESELFGH KGAFTGAI G+ E+A GTLFLDEIG+ Sbjct: 195 LGPRADGPFIAINCGAIPEPLLESELFGHEKGAFTGAIKQTPGRIELAQGGTLFLDEIGD 254 Query: 291 LSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSV 350 L LALQ KLLR LQ G I+RVG R + +D R+++AT++DL V AGRFR DL RL++ Sbjct: 255 LPLALQVKLLRFLQEGVIERVGGRRPIPIDARIVSATHQDLDGLVAAGRFRLDLLFRLNI 314 Query: 351 FPLSVPPLRERGDDVILLAGYFCE---QCRLRQGLSRVVLSAGARNLLQHYSFPGNVREL 407 + +PPLRERG D +LLA +F Q + RQGL+ S A L + +PGNVREL Sbjct: 315 VSVRIPPLRERGGDAVLLARFFLRRFAQDQNRQGLA---FSEAAIAALMRHGWPGNVREL 371 Query: 408 EHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRET 467 E+ + RAV++A E Q ++ L +A +P ++ REA +RE Sbjct: 372 ENRVRRAVIMA-----------EGQQIEAADLDLADGALAPLPDLRSARREA----EREA 416 Query: 468 IRQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 ++ ALA+ + A A++L L+ L LGL Sbjct: 417 VQLALARADGSMVAAAKLLGISRPTLYALIDSLGLS 452 >UniRef50_A6CEU3 Acetoacetate metabolism regulatory protein atoC n=2 Tax=Planctomycetaceae RepID=A6CEU3_9PLAN Length = 346 Score = 239 bits (610), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 120/232 (51%), Positives = 166/232 (71%) Query: 187 MIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAA 246 M+GLSP M + + AA+ VL++GETGTGKEL+A+AIHE SPRA P + +NC A Sbjct: 11 MVGLSPAMRNIYRLTRRAAATSSTVLLTGETGTGKELIARAIHELSPRATGPFIRVNCGA 70 Query: 247 LPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYG 306 L ES+ ESELFGH+KGAFT A+ NR+G+FE A GT+FLDEI +S LQ KLLRVLQ Sbjct: 71 LSESLLESELFGHIKGAFTSAVENRTGRFEAAHGGTIFLDEINSVSFTLQVKLLRVLQEH 130 Query: 307 DIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVI 366 + +RVGD R ++VD R++AATNRDL +E+ A RFR DL++RL+V P+++PPLRER +D+ Sbjct: 131 EFERVGDTRSIQVDCRIVAATNRDLLDEIEAERFREDLYYRLNVIPINLPPLRERAEDIP 190 Query: 367 LLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLA 418 L +F +Q + + S + ++YS+PGNVREL++ + R +VL+ Sbjct: 191 ELVHFFAKQFSAEEKIPLPEFSEEVLSTFKNYSWPGNVRELQNYVERLIVLS 242 >UniRef50_B1JEG3 Two component, sigma54 specific, transcriptional regulator, Fis family n=61 Tax=Proteobacteria RepID=B1JEG3_PSEPW Length = 469 Score = 239 bits (610), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 138/318 (43%), Positives = 192/318 (60%), Gaps = 15/318 (4%) Query: 185 TQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNC 244 T+++G SP M +L+++I +A + +VLI GETG GKE+VA+A+H+ S R P V +N Sbjct: 150 TRLVGHSPAMQRLREQIGALAGTRADVLILGETGAGKEVVARALHDLSSRRDGPFVAINA 209 Query: 245 AALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQ 304 AL ESV ESELFGH GAFTGA R GKFE A+ GTLFLDEI +SL +Q KLLR+LQ Sbjct: 210 GALAESVVESELFGHEPGAFTGAQKRRIGKFEFANGGTLFLDEIESMSLDVQVKLLRLLQ 269 Query: 305 YGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDD 364 ++R+G ++ + +D+R++AAT DLR+ GRFRADL++RL+V PL +PPLRERGDD Sbjct: 270 ERVVERLGGNQLIPLDIRIIAATKEDLRQSADQGRFRADLYYRLNVAPLRIPPLRERGDD 329 Query: 365 VILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSG 424 +++L +F + R GL L R +L +++PGNVREL++A R + G Sbjct: 330 ILVLFQHFADTASQRHGLPPQTLQPAHRAMLLRHAWPGNVRELQNAAERFAL-------G 382 Query: 425 DEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACAR 484 E+ L+ Q A P+ NL E E F+R I L Q H + + A Sbjct: 383 LELALDHQAPAA--------AAPTAPLQLGNLSEQVEQFERSLIAAELGQPHSSMRSLAE 434 Query: 485 MLETDVANLHRLAKRLGL 502 L LH ++ GL Sbjct: 435 ALGIPRKTLHDKLRKHGL 452 >UniRef50_B5EIR5 Transcriptional regulator, NifA subfamily, Fis Family n=6 Tax=Bacteria RepID=B5EIR5_GEOBB Length = 664 Score = 239 bits (610), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 133/328 (40%), Positives = 205/328 (62%), Gaps = 24/328 (7%) Query: 110 VHACVGLPLFAGQNLIGALT-----LDGMQPDQFDVFSDEELRLIAALAAGALS------ 158 + + + +P G ++GA+T + PD+ + LRL+ + A AL Sbjct: 256 IKSIMFIPASVGGTIVGAITFVSYSVKKEWPDELT----QRLRLLWEVFANALERKRADQ 311 Query: 159 ---NAL-----LIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLN 210 NAL L ++LE++N+ D E K ++IG S + + ++I+ VA +D Sbjct: 312 KIQNALAEIRQLKDRLEAENVYLRDQIDVE-YKHEEIIGKSEAIRNVLQQIQQVAPTDST 370 Query: 211 VLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISN 270 VLI GETGTGKEL+A+AIH A R ++ +NCAALP ++ E+ELFGH KGA+TGA+S+ Sbjct: 371 VLILGETGTGKELIARAIHNAGQRKARAMIKVNCAALPAALIEAELFGHEKGAYTGAVSS 430 Query: 271 RSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRD 330 + G+FE A+ T+FLDEIGEL L LQ+KLLRV+Q G +R+G+ + ++ DVRV+AATN Sbjct: 431 QIGRFEAANGSTIFLDEIGELPLELQSKLLRVIQEGQFERLGNSKPVKADVRVIAATNVS 490 Query: 331 LREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAG 390 L++ V G+FR DL++RL+VFP+ VPPLR+R +D+ LL E+ G + + Sbjct: 491 LKQAVKEGKFREDLYYRLNVFPIFVPPLRDRQEDIPLLVWAMVEEFSKVFGKTIERIPRK 550 Query: 391 ARNLLQHYSFPGNVRELEHAIHRAVVLA 418 +++ Y +PGN+REL + + RA++L+ Sbjct: 551 NMEIMERYLWPGNIRELRNLVERAMILS 578 >UniRef50_UPI00016C585F ornithine decarboxylase inhibitor-putative sigma54 transciptional regulator n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C585F Length = 643 Score = 239 bits (610), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 142/319 (44%), Positives = 192/319 (60%), Gaps = 9/319 (2%) Query: 184 QTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLN 243 +++++G S + Q++ ++ VA + VL+ GE+G+GKELVA+AIH SPR + LN Sbjct: 332 ESEIVGESAVLQQIESQVVRVAETRATVLVRGESGSGKELVARAIHLHSPRREGAFICLN 391 Query: 244 CAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVL 303 CAAL E++ ESELFGH KGAFTGA GKFE ADNGT+FLDEIGE++L+ QAK LRVL Sbjct: 392 CAALTETLLESELFGHEKGAFTGATERMVGKFEAADNGTIFLDEIGEMALSTQAKFLRVL 451 Query: 304 QYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGD 363 + +RVG + ++VDVRV+AATNR L E V AG FR DLF+RL V L VPPLR+R D Sbjct: 452 EGHPFERVGGNTAIKVDVRVVAATNRPLEEAVRAGTFRRDLFYRLQVVQLDVPPLRDRLD 511 Query: 364 DVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRS 423 DV LLA +F ++ + A + L+ Y +PGNVREL + I RAV L Sbjct: 512 DVPLLAEHFLKRFARETARKFKGFTPEALDKLRAYRWPGNVRELRNVIERAVAL------ 565 Query: 424 GDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACA 483 G+ L+A + + P V+A V K E E ++ I + L N + A Sbjct: 566 GNGPQLDAADIWLSGLDVGAPVVSAALVYKP---ETIEEVEKRHILETLKHTDWNKSRAA 622 Query: 484 RMLETDVANLHRLAKRLGL 502 +L + + L R R GL Sbjct: 623 TILGIERSTLDRKIDRYGL 641 >UniRef50_A2SEH5 Phenol-degradation regulator n=1 Tax=Methylibium petroleiphilum PM1 RepID=A2SEH5_METPP Length = 570 Score = 239 bits (610), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 127/248 (51%), Positives = 163/248 (65%), Gaps = 5/248 (2%) Query: 187 MIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAA 246 +G S G + + V +D VL GE+G GKE A+A+H S R P+V +NCAA Sbjct: 241 FVGTSAGFNAVANLVRRVGVTDSTVLFRGESGVGKERFARALHSVSRRHEQPMVSINCAA 300 Query: 247 LPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYG 306 +P + ESELFG KGAFTGA +R G+FE A GTLFLDEI L L Q KLLRVLQ Sbjct: 301 IPPDLVESELFGVEKGAFTGADHSRPGRFERAHGGTLFLDEISSLPLPAQGKLLRVLQER 360 Query: 307 DIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVI 366 +I+RVGD R +VDVR++AA+NRDLR+EV AGRFR DLF+RL+VFP+ +PPLRER +D+ Sbjct: 361 EIERVGDVRVRKVDVRLVAASNRDLRDEVEAGRFREDLFYRLNVFPIVIPPLRERLEDIP 420 Query: 367 LLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDE 426 LL F E+C R G L+ A + L Y +PGNVRELE+ + RAV+LA D+ Sbjct: 421 LLVALFLERCNRRCGKRVAGLTTRAYDALWDYHWPGNVRELENMVERAVILA-----DDD 475 Query: 427 VILEAQHF 434 ++ QH Sbjct: 476 GKIDVQHL 483 >UniRef50_B3E6R3 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=B3E6R3_GEOLS Length = 447 Score = 239 bits (609), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 146/320 (45%), Positives = 192/320 (60%), Gaps = 17/320 (5%) Query: 186 QMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCA 245 +++G S MT LK I +A D VLI GETGTGKEL A+ IH S R + +NC Sbjct: 142 ELLGASKQMTTLKALITRIAPFDTTVLIQGETGTGKELAARMIHRLSQRRDQRFLPINCG 201 Query: 246 ALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQY 305 ALPE++ ESELFGH +GAFTGA ++ G E AD+GTLFLDEI S A Q KLLRVLQ Sbjct: 202 ALPETLLESELFGHARGAFTGADKDKKGLLESADHGTLFLDEINTTSPAFQVKLLRVLQE 261 Query: 306 GDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDV 365 G RVGD VD+RV+AA+N L +EV GRFR+DLF+RL+V +++PPLRER D+ Sbjct: 262 GSFIRVGDHEPRSVDLRVIAASNTTLEKEVQTGRFRSDLFYRLNVVTITLPPLRERNGDI 321 Query: 366 ILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGD 425 LLA YF + + G+ +S A L++Y +PGNVRELE+ I RAV++A G+ Sbjct: 322 GLLAHYFLTRYARQYGVQLSSISPEALQSLRNYHWPGNVRELENIIERAVIMA----DGN 377 Query: 426 EVILEAQHFAFPEVTLPTPEVAAVPVVK---QNLREATEAFQRETIRQALAQNHHNWAAC 482 E L+ Q+ LP V+ P+ Q L E +R IR A H A Sbjct: 378 E--LQPQY-------LPRFSVSDTPLSSSSDQELLPMAEVERRHIIRVLKATAGHRGKA- 427 Query: 483 ARMLETDVANLHRLAKRLGL 502 +++L +A+L R K+ GL Sbjct: 428 SKLLGISLASLWRKVKQYGL 447 >UniRef50_C7PQF7 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Bacteroidetes RepID=C7PQF7_CHIPD Length = 461 Score = 239 bits (609), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 134/325 (41%), Positives = 197/325 (60%), Gaps = 19/325 (5%) Query: 182 VKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVY 241 +++ +IG S + Q + + +VA SD +VLI+GE+GTGKE +A IH S RA PL+ Sbjct: 143 LRRYGIIGESQRLQQTMQHLSVVAPSDTSVLITGESGTGKEKIADLIHRLSGRASKPLIK 202 Query: 242 LNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLR 301 +NCAA+P + ES LFGH KGAF+GA+ GKFE A G++FLDEIGE+ + +Q KLLR Sbjct: 203 VNCAAMPAELIESLLFGHEKGAFSGALERHIGKFEQASGGSIFLDEIGEMPVDMQVKLLR 262 Query: 302 VLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRER 361 VLQ +I+R+G +VDVR+++AT+R+L +EV GRFR D ++RL+VFPL +PPLRER Sbjct: 263 VLQEKEIERIGAMHSQKVDVRIISATSRNLEKEVADGRFRMDFYYRLNVFPLHLPPLRER 322 Query: 362 GDDVILLAGYFCE-QCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARA 420 +D+ L YF E CR G V ++ + L YS+PGN+RELEH I R+V+L Sbjct: 323 REDIPALVDYFLEMHCR-NIGRPLVTVTRRVMDSLILYSWPGNIRELEHLIERSVLLCEG 381 Query: 421 TRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNH---H 477 ++TLP ++ VPV ++ + + +RE I L + Sbjct: 382 P-------------VITQITLPE-KIEYVPVAQEERVKTMQENEREHIIDVLRRCRGKIF 427 Query: 478 NWAACARMLETDVANLHRLAKRLGL 502 A +L +V+ L+ ++LG+ Sbjct: 428 GKGGAAELLSMNVSTLNYRIRKLGI 452 >UniRef50_A4SC79 DNA-binding protein Fis / transcriptional regulator, Fis family n=11 Tax=Bacteria RepID=A4SC79_PROVI Length = 704 Score = 239 bits (609), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 149/366 (40%), Positives = 217/366 (59%), Gaps = 10/366 (2%) Query: 146 LRLIAALAAGALSNALLIEQLES-QNMLPGDATPF-EAVKQT----QMIGLSPGMTQLKK 199 L LI + AL N L +++++ + L G+ T E ++ ++IG S + + + Sbjct: 336 LNLIIPQLSLALQNLLAFDEIDTLRQRLEGERTYLKEEIRAVHNFEEIIGTSAPLAAVLR 395 Query: 200 EIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGH 259 + VA +D VLI GETGTGKEL A+AIH SPR LV +NCAALP ++ ESELFGH Sbjct: 396 RVSQVAPTDATVLIQGETGTGKELFARAIHTLSPRNERVLVRVNCAALPATLIESELFGH 455 Query: 260 VKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRV 319 KG+FTGA R GKFE+AD GT+FLDEIGEL L LQ+K+LRVLQ +I+R+G + + V Sbjct: 456 EKGSFTGATGRRIGKFELADGGTIFLDEIGELPLELQSKMLRVLQEREIERLGGGKLIPV 515 Query: 320 DVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLR 379 +VRV+AA+NRDL++EV AGRFRADLF RL+ FP+ +PPLR R D+ +LA +F ++ Sbjct: 516 NVRVIAASNRDLQKEVAAGRFRADLFFRLNAFPIFLPPLRARTGDISMLALHFAQKFARE 575 Query: 380 QGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVIL--EAQHFAFP 437 G + L+ + GN+REL HAI +AV+L IL ++H A Sbjct: 576 FGRPNRPIRERDMQELKERQWKGNIRELAHAIEQAVILTDGPVLDFSTILTPRSRHLAAL 635 Query: 438 EVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLA 497 + P + ++ + ++ +RE + + QA + A A +L L+ Sbjct: 636 SPS-PAKGIQSMAIFEEEVREMERTLILDALDQAKGRVSGKGGA-AELLSIHPKTLYTRI 693 Query: 498 KRLGLK 503 ++LGL+ Sbjct: 694 EKLGLR 699 >UniRef50_C9YH12 Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YH12_9BURK Length = 455 Score = 239 bits (609), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 144/324 (44%), Positives = 194/324 (59%), Gaps = 18/324 (5%) Query: 187 MIGLSPGMTQLKKEIEIVA-------ASDLNVLISGETGTGKELVAKAIHEASPRAVNPL 239 +IG SP M L+ ++ ++ S +LI GETGTGKELVA+A H+A PRA P Sbjct: 142 LIGESPEMVALRSMVQKLSLLEPTDQTSAAPILIIGETGTGKELVARACHQAGPRADAPF 201 Query: 240 VYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKL 299 V +NCAALP + E ELFG+ KGAFT A + + G E AD GTLFLDEIGE+ L LQAKL Sbjct: 202 VEINCAALPAHLMEGELFGYEKGAFTDAHARKMGLIESADGGTLFLDEIGEMDLGLQAKL 261 Query: 300 LRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLR 359 LRVL+ ++R+G +V+VR++AATNRDL V GRFR+DL +RLSVF + +PPLR Sbjct: 262 LRVLENFKVRRLGSLTDRQVNVRIVAATNRDLDIHVREGRFRSDLLYRLSVFQIQIPPLR 321 Query: 360 ERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLAR 419 RGDDV+ LA + +Q + G + L A A L+ Y+FPGNVREL + + RA +L Sbjct: 322 ARGDDVLHLARHLLDQQARKYGHGTLRLDASAAQALKGYAFPGNVRELRNLLERAALL-- 379 Query: 420 ATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNW 479 ++G + ++ LP EV + P + EA +RE + +AL +H N Sbjct: 380 --QTGGFI-------KIADLALPQAEVRSAPAAGAGPATSLEAVEREHLVRALEAHHWNV 430 Query: 480 AACARMLETDVANLHRLAKRLGLK 503 AR L+ L +R GLK Sbjct: 431 TRAARSLDISRDTLRYRMERHGLK 454 >UniRef50_A1AUC3 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Desulfuromonadales RepID=A1AUC3_PELPD Length = 465 Score = 239 bits (609), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 117/235 (49%), Positives = 171/235 (72%) Query: 187 MIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAA 246 M+G P M ++ + + +AA+ VLI GE+GTGKELVA+AIHE S R NP + +NCAA Sbjct: 148 MLGDHPRMAEVFRVVAKIAATTSTVLIVGESGTGKELVARAIHEGSQRRDNPFMAINCAA 207 Query: 247 LPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYG 306 +PE++ ESELFGH KG+FTGA + G FE A+ GT+FLDEIGE+++++QAKLLR +Q Sbjct: 208 IPETLIESELFGHEKGSFTGAHARELGVFEAANGGTVFLDEIGEMNVSMQAKLLRAIQEK 267 Query: 307 DIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVI 366 +++RVG + +DVR+++ATN++L +E+ G FR DL++RL+V +++PPLRERG DV Sbjct: 268 EVRRVGGRVNIPLDVRIISATNKELEQEIRRGSFREDLYYRLNVIRINLPPLRERGSDVK 327 Query: 367 LLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARAT 421 LA +F ++ L G+ +S A LL +YS+PGNVR+LE I RAV++A ++ Sbjct: 328 TLAEFFVKKYSLATGIDVEGISRPALKLLMNYSWPGNVRQLESVIERAVLMAESS 382 >UniRef50_C0A2X1 Response regulator receiver protein n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A2X1_9BACT Length = 519 Score = 239 bits (609), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 119/235 (50%), Positives = 169/235 (71%), Gaps = 2/235 (0%) Query: 187 MIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAA 246 ++G SP M + K + V ASD+ V+I+GE+GTGKELVA++I + S RA + +NCAA Sbjct: 148 IVGASPVMQDVFKIVGQVTASDVTVMITGESGTGKELVARSIWKHSHRAAKSFIAVNCAA 207 Query: 247 LPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYG 306 +P+++ ESELFGH KG+FTGA R GKFE+ D GT+FLDEIG+++LA Q K+LRVLQ G Sbjct: 208 IPDNLIESELFGHEKGSFTGATGQRIGKFELCDRGTIFLDEIGDMALATQTKILRVLQQG 267 Query: 307 DIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVI 366 +IQRVG ++VDVR++AATN+DL V A FR DL++RL+V + +PPLRER D+ Sbjct: 268 EIQRVGGTDTIKVDVRIIAATNKDLEAMVKAKTFREDLYYRLNVVRIKMPPLRERTGDIP 327 Query: 367 LLAGYFCEQCRLRQGLSRV-VLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARA 420 + FC Q ++Q +RV +S A N+L + +PGNVRELE+ ++R+ V+A+ Sbjct: 328 QIVD-FCLQNLVKQKKARVGKVSPEAMNILARHDWPGNVRELENVVYRSAVIAQG 381 >UniRef50_Q6LW41 Hypothetical two-component response regulator n=2 Tax=Vibrionaceae RepID=Q6LW41_PHOPR Length = 472 Score = 239 bits (609), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 126/278 (45%), Positives = 187/278 (67%), Gaps = 4/278 (1%) Query: 187 MIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAA 246 M+ S Q+ + + VA +D +VLI+GE+G+GKE++A+ IH++SPRA P + +NCAA Sbjct: 122 MVAESCKSKQMFQLAQRVAQTDASVLITGESGSGKEVLAQFIHDSSPRAAGPFIAINCAA 181 Query: 247 LPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYG 306 +PES+ ES LFGH KGAFTGA S ++GK E+A+ GTL LDEIGEL LALQ KLLRVLQ Sbjct: 182 IPESMIESILFGHTKGAFTGATSAQAGKLEVANGGTLLLDEIGELPLALQTKLLRVLQER 241 Query: 307 DIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVI 366 +++R+G + +++D+ VLAATN+DL + + AGRFRADL++RL+VFPL L++R DD+I Sbjct: 242 EVERLGSHQKIKLDIHVLAATNQDLEKAIAAGRFRADLYYRLNVFPLHCASLKDRRDDII 301 Query: 367 LLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARAT--RSG 424 LA + + G + + A+ +L Y +PGNVRELE+ I RA+V++R R Sbjct: 302 PLANNLLRR-HMPPGQASTEFTKAAQKVLCSYDWPGNVRELENVIQRALVMSRGCLIREE 360 Query: 425 DEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEA 462 D ++ ++ +T P A++ VV+ + T + Sbjct: 361 DLMLPTFENITSERIT-GVPTSASLSVVRPTRKSMTSS 397 >UniRef50_C8X0P6 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X0P6_DESRD Length = 452 Score = 238 bits (608), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 132/248 (53%), Positives = 160/248 (64%), Gaps = 6/248 (2%) Query: 187 MIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAA 246 +IG +P M LK+EI VA D NVLI GETGTGKELVAK IH S RA + +NC A Sbjct: 144 LIGKNPRMQNLKREIARVAPLDCNVLILGETGTGKELVAKTIHNMSMRADQKFLAVNCGA 203 Query: 247 LPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYG 306 L E + +ELFGH K AFTGA + G FE GTL LDEIG++ LA+Q +LLRVLQ Sbjct: 204 LNEELLGNELFGHEKEAFTGAQRVKKGVFEALAGGTLLLDEIGDMPLAMQVQLLRVLQEK 263 Query: 307 DIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVI 366 I R+G R + VD RVLAATNR L+E+V AG FR DL++RL+VF L +PPLRER DD+ Sbjct: 264 SIMRIGGTREIPVDTRVLAATNRPLQEDVQAGGFRQDLYYRLNVFTLRIPPLRERADDIP 323 Query: 367 LLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDE 426 L YF E+ L + S +LQHY FPGNVRELE+ I RA+VL D Sbjct: 324 LFCRYFLEKYTLEFNKTIERFSDEVVEILQHYQFPGNVRELENIIERAIVLC------DG 377 Query: 427 VILEAQHF 434 +LE +H Sbjct: 378 PVLERRHL 385 >UniRef50_Q311G4 DNA-binding protein Fis / transcriptional regulator, Fis family n=10 Tax=Desulfovibrionales RepID=Q311G4_DESDG Length = 576 Score = 238 bits (608), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 135/341 (39%), Positives = 204/341 (59%), Gaps = 15/341 (4%) Query: 164 EQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKEL 223 + + +Q ++ GD V+ ++ S M + ++ V S L+ GE+GTGKEL Sbjct: 235 KHMMTQGLIGGDVAE-NTVQAANIVAASKSMRLVLNQVAQVGPSRATALLRGESGTGKEL 293 Query: 224 VAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTL 283 +A+AIH+ASPR PL+ LNCAALP + ESELFG+ KGAFTGA+ N+ G FE+A GTL Sbjct: 294 LAEAIHQASPRRDMPLIKLNCAALPSDLVESELFGYQKGAFTGAVQNKKGLFELAHKGTL 353 Query: 284 FLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRAD 343 FLDEIGELS + QAK+LR +Q +IQR+G ++ + VDVR++ AT++ L E V +G FR D Sbjct: 354 FLDEIGELSASAQAKVLRAIQEQEIQRLGSEQTISVDVRLICATHQHLEELVESGSFRED 413 Query: 344 LFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGN 403 L++R++VFP+ +PPLRER +D++ +A +F ++ S +S A +LL Y +PGN Sbjct: 414 LYYRINVFPVFIPPLRERREDILPVAEHFLKEYAEEYQKSIKRISTPAIDLLTQYHWPGN 473 Query: 404 VRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLR--EATE 461 +REL++ I RAV++ DE ++ H P+ + A +L EA Sbjct: 474 IRELKNCIERAVLVC------DEQVIRTYHMP------PSLQTAESTATDSSLSFCEAVA 521 Query: 462 AFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 F++E + AL + N AR L ++ K+ G+ Sbjct: 522 KFEQELLVDALKKARGNMLQAARDLRVSYRIVNYKVKKYGI 562 >UniRef50_B4D0Z8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D0Z8_9BACT Length = 466 Score = 238 bits (608), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 147/375 (39%), Positives = 211/375 (56%), Gaps = 25/375 (6%) Query: 130 LDGMQPDQFDV----FSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQT 185 L+ M+ +D F +EL+L AL N L+ + + + + FE + Sbjct: 89 LEAMKLGAYDYITKPFKVDELQLTIQ---RALDNQSLVRENRNLRQIVKEKYRFENI--- 142 Query: 186 QMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCA 245 IG S M ++ I VA +D +LI GE+GTGKELVA+A+H S R P V +NC+ Sbjct: 143 --IGTSTKMQEIYNLIAKVADTDSTILIQGESGTGKELVARALHFNSTRQHQPFVAINCS 200 Query: 246 ALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQY 305 ALPE++ ESELFGH KG+FTGA+ ++ G FE A+ GT+FLDE+ ++ LQ KLLRVLQ Sbjct: 201 ALPENLLESELFGHKKGSFTGAVQDKIGLFEEAEGGTIFLDEVNSMAQPLQTKLLRVLQE 260 Query: 306 GDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDV 365 I+RVGD + + ++VRVLAATN L +++ G FR DL++RL+V P+ +P LRER DD+ Sbjct: 261 RQIRRVGDTKSVPINVRVLAATNEALGDKIKGGNFREDLYYRLAVIPVEMPALRERPDDI 320 Query: 366 ILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLA-----RA 420 LL +F ++ + G + A +L Y +PGNVRELE+A+ RA L R Sbjct: 321 PLLVSHFLQKNAAQTGTEAKKIDPKAIEMLAKYRWPGNVRELENAVERACALCDDALIRT 380 Query: 421 TRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWA 480 T +VI A T P E + V Q L E +R I + + N ++ Sbjct: 381 TDLPPQVIRHA--------TAPPVEHSGTLPVGQTLDEYIREQERRYIEETIKFNGNSRE 432 Query: 481 ACARMLETDVANLHR 495 A+ML +A L+R Sbjct: 433 KAAKMLGISMATLYR 447 >UniRef50_B8FXS0 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Firmicutes RepID=B8FXS0_DESHD Length = 463 Score = 238 bits (607), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 137/327 (41%), Positives = 193/327 (59%), Gaps = 15/327 (4%) Query: 186 QMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCA 245 +++ S MT L VA +D +VLI GE+G GKEL+A+AIH S R P + +N Sbjct: 144 KIVAESEAMTSLLNMTRKVAQTDTSVLIQGESGVGKELIAQAIHFWSSRVNRPCIPVNAG 203 Query: 246 ALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQY 305 A+PE++ ESELFGH KGAFTGA + + G EMADNGTLFLDEIGE+ LA+Q KLLR L+ Sbjct: 204 AIPETLIESELFGHEKGAFTGAGTQKIGLVEMADNGTLFLDEIGEMPLAIQVKLLRFLES 263 Query: 306 GDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDV 365 G+ +RVGD R +VDVR++AATNRDL +E+ GRFR DLF+RL+ L VPPLRER D+ Sbjct: 264 GEFRRVGDTRLRQVDVRIVAATNRDLGQEIAQGRFREDLFYRLNGLTLLVPPLRERRGDI 323 Query: 366 ILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGD 425 + L +F + R R L+ + L +Y FPGN REL H I R +L S D Sbjct: 324 LPLVHHFLKTQRKELPHERYSLAPETQEQLLNYDFPGNTRELFHLIERGQIL-----SAD 378 Query: 426 EVILEAQHFAFPEVTLPTPEVAA--------VPVVKQNLREATEAFQRETIRQALAQNHH 477 +I +PE + PT + ++ + + +++ + + ++ I L + Sbjct: 379 GIITPGD--IWPEKSAPTLKSSSAFASEEEFLQIFQEHPYPSLDDVEKAYILSTLKKAKG 436 Query: 478 NWAACARMLETDVANLHRLAKRLGLKD 504 N A +L V NL+R + G+ + Sbjct: 437 NKTQTAHILGISVRNLYRKLQTYGVSE 463 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_C1NCQ8 YgaA protein n=5 Tax=Escherichia RepID=C1NCQ8_9ESCH 763 0.0 UniRef50_A6TCX4 Anaerobic nitric oxide reductase transcription r... 702 0.0 UniRef50_A7K2J6 Anaerobic nitric oxide reductase transcription r... 657 0.0 UniRef50_Q5E3W8 Anaerobic nitric oxide reductase transcription r... 641 0.0 UniRef50_A8GG93 Anaerobic nitric oxide reductase transcription r... 636 0.0 UniRef50_O87455 Regulatory protein luxO n=68 Tax=Gammaproteobact... 617 e-175 UniRef50_C4LCC7 Transcriptional regulator, NifA subfamily, Fis F... 610 e-173 UniRef50_Q12MS3 Sigma-54 factor, interaction region n=2 Tax=Alte... 597 e-169 UniRef50_Q127H6 Transcriptional regulator, NifA subfamily, Fis f... 593 e-168 UniRef50_Q3IJS0 Transcriptional regulator of anaerobic NO reduct... 585 e-165 UniRef50_Q07WT9 Transcriptional regulator, Fis family protein n=... 584 e-165 UniRef50_Q9K4U8 Nitric oxide reductase transcription regulator n... 578 e-163 UniRef50_B3Q676 Transcriptional regulator, NifA subfamily, Fis F... 571 e-161 UniRef50_Q1R0E5 Transcriptional regulator, NifA subfamily, Fis f... 558 e-157 UniRef50_A3ER00 Transcriptional regulator, NifA, Fis Family n=3 ... 556 e-157 UniRef50_P12626 Nitrogen fixation protein anfA n=11 Tax=Bacteria... 554 e-156 UniRef50_C8QWL5 Transcriptional regulator, NifA, Fis Family n=1 ... 553 e-156 UniRef50_A6FFF2 Anaerobic nitric oxide reductase transcription r... 547 e-154 UniRef50_B3QSR6 Transcriptional regulator, NifA, Fis Family n=2 ... 546 e-154 UniRef50_B5ER80 Transcriptional regulator, NifA, Fis Family n=2 ... 546 e-154 UniRef50_B0SC18 Transcriptional regulator n=7 Tax=Bacteria RepID... 546 e-153 UniRef50_Q3AR86 DNA-binding protein Fis / transcriptional regula... 543 e-153 UniRef50_Q2LXW8 Nif-specific regulatory protein with sigma 54 in... 542 e-152 UniRef50_B6WRE4 Putative uncharacterized protein n=1 Tax=Desulfo... 539 e-152 UniRef50_D0MEW0 Transcriptional regulator, NifA subfamily, Fis F... 538 e-151 UniRef50_A0LFR7 Transcriptional regulator, NifA subfamily, Fis F... 537 e-151 UniRef50_P27713 Nif-specific regulatory protein n=3 Tax=Burkhold... 534 e-150 UniRef50_B8IZX3 Transcriptional regulator, NifA subfamily, Fis F... 533 e-150 UniRef50_B8FJT8 Two component, sigma54 specific, transcriptional... 533 e-150 UniRef50_Q73KY8 Sigma-54 dependent transcriptional regulator, pu... 530 e-149 UniRef50_C0QE85 FhlA n=1 Tax=Desulfobacterium autotrophicum HRM2... 528 e-148 UniRef50_Q026M7 Transcriptional regulator, NifA subfamily, Fis F... 528 e-148 UniRef50_C9RS71 Transcriptional regulator, NifA subfamily, Fis F... 527 e-148 UniRef50_Q1NW39 Nif-specific regulatory protein n=2 Tax=Deltapro... 526 e-148 UniRef50_B5YH04 Transcriptional regulator n=1 Tax=Thermodesulfov... 525 e-147 UniRef50_Q7M8U4 TRANSCRIPTIONAL REGULATOR (NIFA FAMILY) n=1 Tax=... 523 e-147 UniRef50_P19323 Formate hydrogenlyase transcriptional activator ... 522 e-146 UniRef50_Q2RHS4 Sigma54 specific transcriptional regulator, Fis ... 521 e-146 UniRef50_C0GSN4 Transcriptional regulator, NifA subfamily, Fis F... 521 e-146 UniRef50_B5JMU1 Sigma-54 interaction domain family n=1 Tax=Verru... 520 e-146 UniRef50_A4J443 Two component, sigma54 specific, transcriptional... 520 e-146 UniRef50_C9RBQ4 Two component, sigma54 specific, transcriptional... 519 e-145 UniRef50_A0LH02 Transcriptional regulator, NifA subfamily, Fis F... 518 e-145 UniRef50_B8FJD2 Transcriptional regulator, NifA subfamily, Fis F... 518 e-145 UniRef50_B3DZA5 Transcriptional regulator NifA, contains GAF, AA... 516 e-145 UniRef50_C0GSE0 Sigma54 specific transcriptional regulator, Fis ... 516 e-145 UniRef50_P71229 Hydrogenase-4 transcriptional activator n=45 Tax... 516 e-145 UniRef50_P40734 Formate hydrogenlyase transcriptional activator ... 516 e-145 UniRef50_Q39TH4 Transcriptional regulator, NifA subfamily, Fis f... 516 e-145 UniRef50_C8W392 Two component, sigma54 specific, transcriptional... 515 e-144 UniRef50_Q893M0 Putative sigma-54 interacting protein n=1 Tax=Cl... 515 e-144 UniRef50_B6YRB5 Nif-specific regulatory protein n=1 Tax=Candidat... 515 e-144 UniRef50_C1F0X6 Sigma-54 dependent transcriptional regulator, Fi... 515 e-144 UniRef50_C7PQF6 Transcriptional regulator, NifA subfamily, Fis F... 514 e-144 UniRef50_A9ET26 Transcriptional regulator n=2 Tax=Myxococcales R... 513 e-144 UniRef50_A4J616 Two component, sigma54 specific, transcriptional... 513 e-144 UniRef50_C7LX45 Transcriptional regulator, NifA subfamily, Fis F... 512 e-143 UniRef50_Q3A356 Two component, sigma54 specific, transcriptional... 511 e-143 UniRef50_A6EHC4 Sigma-54-dependent transcriptional regulator n=1... 511 e-143 UniRef50_Q1D574 Sigma-54 dependent transcriptional regulator, Fi... 510 e-143 UniRef50_Q06065 Acetoacetate metabolism regulatory protein atoC ... 509 e-142 UniRef50_Q1DC06 Sigma-54 dependent transcriptional regulator, Fi... 509 e-142 UniRef50_C4XRA9 Transcriptional regulatory protein ZraR n=9 Tax=... 508 e-142 UniRef50_B8FLD5 Transcriptional regulator, NifA subfamily, Fis F... 506 e-142 UniRef50_B0VES5 Putative uncharacterized protein n=1 Tax=Candida... 506 e-142 UniRef50_A7HFP7 Transcriptional regulator, NifA subfamily, Fis F... 505 e-141 UniRef50_A6EHB3 Sigma-54-dependent transcriptional regulator n=1... 505 e-141 UniRef50_Q2LUG8 Response regulator containing CheY-like receiver... 504 e-141 UniRef50_Q1D5E1 Sigma-54 dependent transcriptional regulator, Fi... 504 e-141 UniRef50_Q2LRW3 Response regulator containing sigma 54 interacti... 504 e-141 UniRef50_D0LFQ8 Two component, sigma54 specific, transcriptional... 504 e-141 UniRef50_C6W352 Sigma54 specific transcriptional regulator, Fis ... 503 e-141 UniRef50_C9RIK1 Transcriptional regulator, NifA subfamily, Fis F... 503 e-141 UniRef50_C8WZC4 Two component, sigma54 specific, transcriptional... 503 e-141 UniRef50_A9EN62 Sigma-54 dependent transcriptional regulator n=1... 502 e-140 UniRef50_D2QLL9 Transcriptional regulator, NifA subfamily, Fis F... 502 e-140 UniRef50_A4CKT3 Transcriptional regulator, NifA subfamily, Fis F... 502 e-140 UniRef50_C1ZJW6 Transcriptional regulator containing GAF, AAA-ty... 502 e-140 UniRef50_Q2RXL4 Transcriptional regulator, NifA subfamily, Fis f... 501 e-140 UniRef50_Q2LSK2 Sigma-54 dependent transcriptional regulator n=4... 501 e-140 UniRef50_Q1D6H5 Sigma-54 dependent DNA-binding response regulato... 501 e-140 UniRef50_A0KL56 Formate hydrogenlyase transcriptional activator ... 501 e-140 UniRef50_B4DAQ1 Transcriptional regulator, NifA subfamily, Fis F... 500 e-140 UniRef50_C8WE21 Transcriptional regulator, NifA, Fis Family n=4 ... 500 e-140 UniRef50_Q3ABV5 Sigma-54 dependent transcriptional regulator n=3... 500 e-140 UniRef50_Q311G4 DNA-binding protein Fis / transcriptional regula... 499 e-140 UniRef50_B3DZ60 DNA-binding response regulator, NtrC family (Con... 499 e-140 UniRef50_Q1INE5 Two component, sigma54 specific, transcriptional... 499 e-139 UniRef50_Q4K714 Sigma-54 dependent DNA-binding response regulato... 498 e-139 UniRef50_A6GDL8 Sigma-54 dependent transcriptional regulator, Fi... 498 e-139 UniRef50_D1CFK1 Two component, sigma54 specific, transcriptional... 498 e-139 UniRef50_A1AL12 Transcriptional regulator, Fis family n=1 Tax=Pe... 498 e-139 UniRef50_C6HY50 Sigma54 specific transcriptional regulator, Fis ... 498 e-139 UniRef50_A0LJL7 Two component, sigma54 specific, transcriptional... 498 e-139 UniRef50_B5YHF3 Acetoacetate metabolism regulatory protein AtoC ... 497 e-139 UniRef50_A9G6P0 Sigma-54 dependent DNA-binding response regulato... 497 e-139 UniRef50_Q1Q1B9 Strong similarity to sigma 54 response regulator... 497 e-139 UniRef50_D2QGL7 Two component, sigma54 specific, transcriptional... 497 e-139 UniRef50_C7PN78 Sigma54 specific transcriptional regulator, Fis ... 496 e-139 UniRef50_UPI00016C585F ornithine decarboxylase inhibitor-putativ... 496 e-139 UniRef50_D0Z425 Formate hydrogenlyase transcriptional activator ... 496 e-139 UniRef50_C0QRG3 Transcriptional regulatory protein ZraR n=2 Tax=... 496 e-139 UniRef50_B8FEY3 Two component, sigma54 specific, transcriptional... 496 e-138 UniRef50_C7PEX2 Sigma54 specific transcriptional regulator, Fis ... 495 e-138 UniRef50_C6VVC1 Sigma54 specific transcriptional regulator, Fis ... 495 e-138 UniRef50_C4FI59 AAA family ATPase n=1 Tax=Sulfurihydrogenibium y... 495 e-138 UniRef50_Q1D4K8 Sigma-54 dependent DNA-binding response regulato... 495 e-138 UniRef50_A9AYA4 Two component, sigma54 specific, transcriptional... 495 e-138 UniRef50_C6E9E0 Two component, sigma54 specific, transcriptional... 494 e-138 UniRef50_A5G9U3 Two component, sigma54 specific, transcriptional... 494 e-138 UniRef50_B5EIR5 Transcriptional regulator, NifA subfamily, Fis F... 494 e-138 UniRef50_UPI00016C3921 transcriptional regulator, NifA subfamily... 494 e-138 UniRef50_C1ZA32 Transcriptional regulator containing GAF, AAA-ty... 494 e-138 UniRef50_Q027A1 Two component, sigma54 specific, transcriptional... 494 e-138 UniRef50_A4VJ57 Nitrogen fixation positive regulatory protein n=... 493 e-138 UniRef50_P03027 Nif-specific regulatory protein n=14 Tax=Proteob... 493 e-138 UniRef50_B5YI42 AdnA n=3 Tax=Bacteria RepID=B5YI42_THEYD 493 e-138 UniRef50_B3U4Q6 Nif-specific regulatory protein n=3 Tax=Bacteria... 493 e-138 UniRef50_D0LWE6 Transcriptional regulator, NifA subfamily, Fis F... 493 e-137 UniRef50_Q1PYK0 Strongly similar to sigma 54 response regulator ... 492 e-137 UniRef50_Q1Q6P9 Similar to Sigma-54 dependent transcriptional re... 492 e-137 UniRef50_Q1D552 Sigma-54 dependent DNA-binding reponse regulator... 492 e-137 UniRef50_A6M003 Two component, sigma54 specific, transcriptional... 491 e-137 UniRef50_Q1D1F9 DNA-binding reponse regulator HsfA n=3 Tax=Myxoc... 491 e-137 UniRef50_Q1PV55 Strongly similar to sigma 54 response regulator ... 491 e-137 UniRef50_C6VTN7 Sigma 54 interacting domain protein n=1 Tax=Dyad... 491 e-137 UniRef50_A5G4X7 Transcriptional regulator, NifA subfamily, Fis F... 491 e-137 UniRef50_Q1JZC1 Two component, sigma54 specific, transcriptional... 490 e-137 UniRef50_Q3A2M3 Two component, sigma54 specific, transcriptional... 490 e-137 UniRef50_B1ZR63 Two component, sigma54 specific, transcriptional... 490 e-137 UniRef50_Q2RVQ1 Transcriptional regulator, NifA, Fis family n=3 ... 490 e-137 UniRef50_B3E7V2 Two component, sigma54 specific, transcriptional... 490 e-137 UniRef50_Q30WZ9 Two component transcriptional regulator, Fis fam... 489 e-137 UniRef50_C1SGB7 Response regulator with CheY-like receiver, AAA-... 489 e-137 UniRef50_A9A0V6 Two component, sigma54 specific, transcriptional... 489 e-137 UniRef50_Q1Q0T6 Strongly similar to sigma 54 response regulator ... 489 e-137 UniRef50_D1R5K3 Putative uncharacterized protein n=1 Tax=Parachl... 489 e-136 UniRef50_B8FIT8 PAS modulated sigma54 specific transcriptional r... 488 e-136 UniRef50_Q8Z333 Transcriptional regulatory protein zraR n=36 Tax... 488 e-136 UniRef50_Q6ARB9 Probable two-component system response regulator... 488 e-136 UniRef50_Q1PYI3 Strongly similar to sigma 54 response regulatory... 488 e-136 UniRef50_A7HIM1 Two component, sigma54 specific, transcriptional... 488 e-136 UniRef50_Q7UK84 Probable two-component response regulator n=1 Ta... 487 e-136 UniRef50_C6WY59 Two component, sigma54 specific, transcriptional... 487 e-136 UniRef50_Q1PZ68 Strongly similar to sigma 54 response regulator ... 487 e-136 UniRef50_B2S3B3 Response regulatory protein n=28 Tax=Spirochaeta... 486 e-136 UniRef50_D2TTF4 Two-component system response regulator n=3 Tax=... 486 e-136 UniRef50_Q53206 Nif-specific regulatory protein n=5 Tax=Alphapro... 486 e-135 UniRef50_C0QPW4 Sigma-54 specific transcriptional regulator, Fis... 486 e-135 UniRef50_Q9APD9 Transcriptional regulatory protein zraR n=89 Tax... 485 e-135 UniRef50_B9M610 Two component, sigma54 specific, transcriptional... 485 e-135 UniRef50_D2QZ64 Transcriptional regulator, NifA subfamily, Fis F... 484 e-135 UniRef50_Q1D217 Sigma-54 dependent DNA-binding reponse regulator... 484 e-135 UniRef50_C1DXU0 Acetoacetate metabolism regulatory protein AtoC ... 484 e-135 UniRef50_P09133 Nif-specific regulatory protein n=18 Tax=Rhizobi... 484 e-135 UniRef50_Q0EZK3 Response regulator of hydrogenase 3 activity (Se... 484 e-135 UniRef50_A3ESE7 Sigma54 specific transcriptional regulator, Fis ... 484 e-135 UniRef50_C2KAU4 Sigma-54-dependent transcriptional regulator n=1... 484 e-135 UniRef50_A6C332 Two component, sigma54 specific, transcriptional... 484 e-135 UniRef50_Q1ZUC7 Formate hydrogenlyase transcriptional activator ... 484 e-135 UniRef50_Q2IQM1 Two component, sigma54 specific, transcriptional... 484 e-135 UniRef50_P05407 Nif-specific regulatory protein n=11 Tax=Rhizobi... 483 e-135 UniRef50_P30667 Nif-specific regulatory protein n=6 Tax=Bacteria... 483 e-135 UniRef50_B5ZJF6 Transcriptional regulator, NifA, Fis Family n=4 ... 483 e-135 UniRef50_A8ZZC1 Transcriptional regulator, NifA subfamily, Fis F... 483 e-135 UniRef50_B8DJ70 Sigma54 specific transcriptional regulator, Fis ... 483 e-134 UniRef50_UPI00016C5695 DNA-binding protein Fis / transcriptional... 483 e-134 UniRef50_Q39SU6 Two component, sigma54 specific, transcriptional... 483 e-134 UniRef50_C8W252 PAS modulated sigma54 specific transcriptional r... 483 e-134 UniRef50_C0GRG2 PAS modulated sigma54 specific transcriptional r... 482 e-134 UniRef50_B2S230 Formate hydrogenlyase transcriptional activator ... 482 e-134 UniRef50_Q1PYB5 Similar to sigma 54 response regulatory protein ... 482 e-134 UniRef50_D0TB92 Two-component system response regulator n=1 Tax=... 482 e-134 UniRef50_A7HGB6 Two component, sigma54 specific, transcriptional... 482 e-134 UniRef50_A7HBA5 Two component, sigma54 specific, transcriptional... 482 e-134 UniRef50_B5YK20 Response regulator HsfA n=1 Tax=Thermodesulfovib... 482 e-134 UniRef50_D2R8T8 Two component, sigma54 specific, transcriptional... 481 e-134 UniRef50_B4D0Z8 Two component, sigma54 specific, transcriptional... 481 e-134 UniRef50_A3ZU96 Probable two-component response regulator n=1 Ta... 481 e-134 UniRef50_C9YE96 Transcriptional regulatory protein xylR n=1 Tax=... 481 e-134 UniRef50_C0QUD7 Nitrogen assimilation regulatory protein n=1 Tax... 481 e-134 UniRef50_B8FWA2 PAS modulated sigma54 specific transcriptional r... 481 e-134 UniRef50_C7PBZ0 Two component, sigma54 specific, transcriptional... 480 e-134 UniRef50_Q1PZT5 Strongly similar to sigma 54 response regulatory... 480 e-134 UniRef50_B8GM58 Transcriptional regulator, NifA subfamily, Fis F... 480 e-134 UniRef50_B8DLN3 Two component, sigma54 specific, transcriptional... 480 e-134 UniRef50_A6GJF4 Sigma-54 dependent, Vanadium nitrogenase transcr... 480 e-134 UniRef50_C0QC42 Putative transcriptional activator n=1 Tax=Desul... 479 e-134 UniRef50_A1ATK4 Two component, sigma54 specific, transcriptional... 479 e-134 UniRef50_A1ALJ3 Sigma-54 factor, interaction domain-containing p... 479 e-133 UniRef50_C1A7J8 Putative NtrC family two-component response regu... 479 e-133 UniRef50_B5YJY4 Response regulator HsfA n=1 Tax=Thermodesulfovib... 479 e-133 UniRef50_C3AI49 Sigma54 specific transcriptional regulator, Fis ... 478 e-133 UniRef50_A8ZV27 Transcriptional regulator, Fis family n=2 Tax=De... 478 e-133 UniRef50_A8IQ96 Transcriptional regulator n=18 Tax=Proteobacteri... 478 e-133 UniRef50_A0YEC8 Transcriptional regulatory protein n=2 Tax=Prote... 478 e-133 UniRef50_B5Y7I9 Acetoacetate metabolism regulatory protein AtoC ... 478 e-133 UniRef50_D2R1I6 Sigma 54 interacting domain protein n=1 Tax=Pire... 478 e-133 UniRef50_C0Q938 Sigma-54 dependent DNA-binding response regulato... 478 e-133 UniRef50_Q1NIP6 Response regulator receiver n=2 Tax=Deltaproteob... 478 e-133 UniRef50_D2R4Q9 Sigma54 specific transcriptional regulator, Fis ... 478 e-133 UniRef50_D0LMB6 Sigma 54 interacting domain protein n=1 Tax=Hali... 478 e-133 UniRef50_A6EHC6 Transcriptional regulator, NifA subfamily, Fis F... 477 e-133 UniRef50_A0LFW8 Two component, sigma54 specific, transcriptional... 477 e-133 UniRef50_Q1IRB0 Two component, sigma54 specific, transcriptional... 477 e-133 UniRef50_B5EHD0 Two component, sigma54 specific, transcriptional... 477 e-133 UniRef50_Q2LUG3 Transcriptional regulator containing GAF, AAA-ty... 476 e-133 UniRef50_A9FR32 Sigma-54 dependent transcriptional regulator n=1... 476 e-133 UniRef50_B8FZI3 Two component, sigma54 specific, transcriptional... 476 e-133 UniRef50_B9XM81 Sigma54 specific transcriptional regulator with ... 476 e-133 UniRef50_C1ZGY0 Transcriptional regulator containing GAF, AAA-ty... 476 e-133 UniRef50_Q1N5U9 Sigma-54 dependent transcriptional regulator/sen... 476 e-133 UniRef50_Q3J8M6 Sigma-54 specific, transcriptional regulator, Fi... 476 e-133 UniRef50_A5D2K0 Transcriptional regulator n=2 Tax=Clostridia Rep... 476 e-133 UniRef50_B9M2U3 Two component, sigma54 specific, transcriptional... 476 e-132 UniRef50_C6MX44 Two component, sigma54 specific, transcriptional... 476 e-132 UniRef50_B9M6T3 Sigma54 specific transcriptional regulator, Fis ... 476 e-132 UniRef50_C7PLV9 Sigma54 specific transcriptional regulator, Fis ... 476 e-132 UniRef50_B1Y713 Transcriptional regulator, NifA, Fis Family n=4 ... 475 e-132 UniRef50_A6G018 Two component, sigma54 specific, transcriptional... 475 e-132 UniRef50_Q39TT6 Transcriptional regulator, Fis family / DNA-bind... 475 e-132 UniRef50_C7LR14 PAS modulated sigma54 specific transcriptional r... 475 e-132 UniRef50_B2V8F5 Two component, sigma54 specific, transcriptional... 474 e-132 UniRef50_A8UFP5 Sigma54 specific transcriptional regulator with ... 474 e-132 UniRef50_C8X1R7 PAS modulated sigma54 specific transcriptional r... 474 e-132 UniRef50_B8JEK1 Sensor protein n=14 Tax=cellular organisms RepID... 474 e-132 UniRef50_C3X424 Transcriptional regulator containing GAF n=2 Tax... 474 e-132 Sequences not found previously or not previously below threshold: UniRef50_C1SIC3 Transcriptional regulator containing GAF, AAA-ty... 513 e-144 UniRef50_D1TMK5 Transcriptional regulator NifA n=1 Tax=Burkholde... 504 e-141 UniRef50_B4U9N2 Transcriptional regulator, NifA subfamily, Fis F... 501 e-140 UniRef50_B5YL21 Acetoacetate metabolism regulatory protein AtoC ... 498 e-139 UniRef50_B5YHK7 SasR n=1 Tax=Thermodesulfovibrio yellowstonii DS... 494 e-138 UniRef50_Q21UU9 Two component, sigma54 specific, transcriptional... 492 e-137 UniRef50_B8FB78 Transcriptional regulator, NifA subfamily, Fis F... 484 e-135 UniRef50_A4J593 Sigma54 specific transcriptional regulator, Fis ... 482 e-134 UniRef50_Q3ACE2 Sigma-54 dependent transcriptional regulator n=1... 481 e-134 UniRef50_Q897M6 Transcriptional regulatory protein n=1 Tax=Clost... 480 e-134 UniRef50_B8FXH0 PAS modulated sigma54 specific transcriptional r... 479 e-134 UniRef50_Q0SQI9 Phosphocarrier HPr/sensory box protein/sigma-54 ... 479 e-133 UniRef50_Q1ZGP7 Formate hydrogen-lyase transcriptional activator... 479 e-133 UniRef50_B8IZ33 Two component, sigma54 specific, transcriptional... 478 e-133 UniRef50_Q1PYM7 Similar to sigma 54 response regulator n=1 Tax=C... 478 e-133 UniRef50_C1F1R9 Mutant NtrC-like activator n=1 Tax=Acidobacteriu... 477 e-133 UniRef50_Q6MMW8 Acetoacetate metabolism regulatory protein atoC ... 477 e-133 UniRef50_B8FD65 Sigma54 specific transcriptional regulator, Fis ... 476 e-132 UniRef50_Q3A5A0 Two component, sigma54 specific, transcriptional... 475 e-132 UniRef50_C0Z5U4 Probable transcriptional regulator n=1 Tax=Brevi... 475 e-132 UniRef50_A9VII1 PAS modulated sigma54 specific transcriptional r... 475 e-132 UniRef50_C1P9P9 PAS modulated sigma54 specific transcriptional r... 474 e-132 UniRef50_A8V246 Two component, sigma54 specific, transcriptional... 474 e-132 >UniRef50_C1NCQ8 YgaA protein n=5 Tax=Escherichia RepID=C1NCQ8_9ESCH Length = 529 Score = 763 bits (1970), Expect = 0.0, Method: Composition-based stats. Identities = 504/504 (100%), Positives = 504/504 (100%) Query: 1 MSFSVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLA 60 MSFSVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLA Sbjct: 26 MSFSVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLA 85 Query: 61 KDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFA 120 KDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFA Sbjct: 86 KDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFA 145 Query: 121 GQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFE 180 GQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFE Sbjct: 146 GQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFE 205 Query: 181 AVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLV 240 AVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLV Sbjct: 206 AVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLV 265 Query: 241 YLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLL 300 YLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLL Sbjct: 266 YLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLL 325 Query: 301 RVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRE 360 RVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRE Sbjct: 326 RVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRE 385 Query: 361 RGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARA 420 RGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARA Sbjct: 386 RGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARA 445 Query: 421 TRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWA 480 TRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWA Sbjct: 446 TRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWA 505 Query: 481 ACARMLETDVANLHRLAKRLGLKD 504 ACARMLETDVANLHRLAKRLGLKD Sbjct: 506 ACARMLETDVANLHRLAKRLGLKD 529 >UniRef50_A6TCX4 Anaerobic nitric oxide reductase transcription regulator norR n=84 Tax=Gammaproteobacteria RepID=NORR_KLEP7 Length = 516 Score = 702 bits (1813), Expect = 0.0, Method: Composition-based stats. Identities = 404/506 (79%), Positives = 440/506 (86%), Gaps = 3/506 (0%) Query: 1 MSFSVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLA 60 MSFSVD LA IAI+LQ IGH DRF RLITTLRQ+L CDASALLRY++ QF+PLAIDGLA Sbjct: 1 MSFSVDELARIAIDLQSDIGHTDRFSRLITTLRQILGCDASALLRYEAHQFVPLAIDGLA 60 Query: 61 KDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFA 120 +DVLGRRFALEGHPRLEAIARAGDVVRFPADS+LPDPYDGLIPG ESLKVHACVGLPLFA Sbjct: 61 QDVLGRRFALEGHPRLEAIARAGDVVRFPADSDLPDPYDGLIPGHESLKVHACVGLPLFA 120 Query: 121 GQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFE 180 GQ LIGALTLDGM D+FD FSDEELRLIAAL AGAL+NALLI +LE+QN+LP A + Sbjct: 121 GQTLIGALTLDGMDADRFDSFSDEELRLIAALVAGALNNALLIARLEAQNVLPAQAVNYP 180 Query: 181 AVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLV 240 ++ ++IGLS M QLKKEI+IVAASDLNVLISGETGTGKELVAKA+H+ SPRA NPLV Sbjct: 181 LPERQEIIGLSGPMLQLKKEIDIVAASDLNVLISGETGTGKELVAKAVHQGSPRAANPLV 240 Query: 241 YLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLL 300 YLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLL Sbjct: 241 YLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLL 300 Query: 301 RVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRE 360 RVLQYGDIQRVGDDR LRVDVRVLAATNRDLR+EV+ GRFRADL+HRLSVFPLSVPPLRE Sbjct: 301 RVLQYGDIQRVGDDRSLRVDVRVLAATNRDLRQEVVEGRFRADLYHRLSVFPLSVPPLRE 360 Query: 361 RGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARA 420 R DV+LLAGYFCEQCRLR GL+RV+L+ ARN LQ +S+PGNVRELEHAIHRAVVLARA Sbjct: 361 RESDVVLLAGYFCEQCRLRMGLARVILAEAARNRLQQWSWPGNVRELEHAIHRAVVLARA 420 Query: 421 TRSGDEVILEAQHFAF---PEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHH 477 T++GDEV+LE QHF F + AA NLREAT++FQRE I +AL N Sbjct: 421 TQAGDEVVLEPQHFQFAVAAPMLPTETAAAAPATGNINLREATDSFQREAISRALEANQG 480 Query: 478 NWAACARMLETDVANLHRLAKRLGLK 503 NWAA AR LE DVANLHRLAKRLGLK Sbjct: 481 NWAATARALELDVANLHRLAKRLGLK 506 >UniRef50_A7K2J6 Anaerobic nitric oxide reductase transcription regulator NorR n=4 Tax=Gammaproteobacteria RepID=A7K2J6_VIBSE Length = 510 Score = 657 bits (1697), Expect = 0.0, Method: Composition-based stats. Identities = 305/510 (59%), Positives = 371/510 (72%), Gaps = 7/510 (1%) Query: 1 MSFSVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLA 60 M+ + I +L + Q RF L+TT+R++L+CDASALL Y+ + F PLAI+GLA Sbjct: 1 MTSLIAQWLYITQDLNSALTRQARFDTLLTTIREILKCDASALLLYEDQHFKPLAINGLA 60 Query: 61 KDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQES-LKVHACVGLPLF 119 K+VLGRRF++ HPRLEAIARAGD+VRFP++S+LPDPYDGLIP + L VH+C+GLPL Sbjct: 61 KEVLGRRFSINQHPRLEAIARAGDIVRFPSNSDLPDPYDGLIPNHDDKLHVHSCIGLPLL 120 Query: 120 AGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPF 179 LIGA+T+D P+QFD ++ELR ++ALAAG L ALL+EQLE+Q LP + Sbjct: 121 IDDQLIGAITIDAFDPNQFDGLLNQELRFVSALAAGGLHTALLLEQLETQASLPRGSYTE 180 Query: 180 EAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPL 239 + ++IG S GM L+++I+ VA ++L+VLI GETG GKELVA AIH S RA N L Sbjct: 181 KRTLSNEIIGKSAGMKALQEQIDAVADTELSVLIMGETGVGKELVANAIHHRSHRANNTL 240 Query: 240 VYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKL 299 VYLNCAALPESVAESELFGH+KGAFTGAISNR GKFE AD GTLFLDE+GELSL LQAKL Sbjct: 241 VYLNCAALPESVAESELFGHIKGAFTGAISNRKGKFEQADGGTLFLDEVGELSLELQAKL 300 Query: 300 LRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLR 359 LR LQYGDIQRVGDDR +RV+ R++AATNR L EEV AGRFRADL+HRLSVFPL VPPLR Sbjct: 301 LRALQYGDIQRVGDDRHIRVNTRIVAATNRVLHEEVKAGRFRADLYHRLSVFPLHVPPLR 360 Query: 360 ERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLAR 419 ER DDV+LLAG+F EQ R + GL+ V LS L+ YS+PGNVRELEH I RA VLA+ Sbjct: 361 EREDDVVLLAGFFAEQLRSKLGLNSVRLSPTLVQALKDYSWPGNVRELEHVIKRAGVLAK 420 Query: 420 ATRSGDEVILEAQHFAF-PEVTLPTPEVAAVPVVK-----QNLREATEAFQRETIRQALA 473 A ++ L Q F PT E + +P L++AT+ FQ+ I +AL Sbjct: 421 ARTQSLDIELVEQDFDIKASNNQPTTEESGIPSSSFELSDAGLKQATDTFQKAMIIKALE 480 Query: 474 QNHHNWAACARMLETDVANLHRLAKRLGLK 503 QN NWAA AR LE D NLHRLAKRLG+K Sbjct: 481 QNQGNWAATARQLELDNGNLHRLAKRLGIK 510 >UniRef50_Q5E3W8 Anaerobic nitric oxide reductase transcription regulator norR n=23 Tax=Gammaproteobacteria RepID=NORR_VIBF1 Length = 512 Score = 641 bits (1655), Expect = 0.0, Method: Composition-based stats. Identities = 288/507 (56%), Positives = 368/507 (72%), Gaps = 8/507 (1%) Query: 6 DVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLAKDVLG 65 D IA++L G+ +DRF+RL++T+R L+CDASALL + ++ F PLA +GL DV+G Sbjct: 6 DEWVQIALDLTSGLSSKDRFERLLSTIRNALKCDASALLLFKNQYFSPLATNGLDGDVIG 65 Query: 66 RRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQE-SLKVHACVGLPLFAGQNL 124 RRFA+ HPRLEAIARAGD+VRFP+DS+LPDPYDGLI +E L+VH+C+GLPL + L Sbjct: 66 RRFAISQHPRLEAIARAGDIVRFPSDSDLPDPYDGLIANEERQLQVHSCIGLPLLVNERL 125 Query: 125 IGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAV-- 182 IGA+T+D P QFD F+++ELR+I+ALAA +L ALL+E+LE+Q+ + + FE Sbjct: 126 IGAVTIDAFDPTQFDSFTNKELRIISALAATSLHTALLMERLENQSGENSNNSSFERSPD 185 Query: 183 KQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYL 242 +MIG S M +L+ I VA ++L+VLI+GETG GKELVA A+H+ S RA LVYL Sbjct: 186 NHVEMIGESLAMQELQANINAVANTELSVLITGETGVGKELVASALHQRSTRAQQNLVYL 245 Query: 243 NCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRV 302 NCAALPESVAESELFGHVKGAFTGAISNR GKFE ADNGTLFLDEIGELSLALQAKLLRV Sbjct: 246 NCAALPESVAESELFGHVKGAFTGAISNRKGKFESADNGTLFLDEIGELSLALQAKLLRV 305 Query: 303 LQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERG 362 LQYGDIQR+GDD ++V+ R++AATN+ L +EV G FRADL+HRLSVFP+ VPPLR+RG Sbjct: 306 LQYGDIQRIGDDNHIKVNTRIIAATNKTLSDEVKNGDFRADLYHRLSVFPIFVPPLRDRG 365 Query: 363 DDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATR 422 +DV LL GYF E+ R++ + + ++ A LL YS+PGN+RELEH I RA VL+RA Sbjct: 366 NDVTLLVGYFAEKSRIKLAATSIRITPEAITLLNDYSWPGNIRELEHVISRAAVLSRAQS 425 Query: 423 SGDEVILEAQHFAF-----PEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHH 477 +++L HF E + V ++LR AT+ FQ I++ + Sbjct: 426 DDSDLVLSPTHFLIKKENHAEKNIANQIVTPHSKNTKDLRSATDEFQANLIKKTYQEQQQ 485 Query: 478 NWAACARMLETDVANLHRLAKRLGLKD 504 NWAA AR L+ D NLHRLAKRL LK+ Sbjct: 486 NWAATARALQLDTGNLHRLAKRLNLKE 512 >UniRef50_A8GG93 Anaerobic nitric oxide reductase transcription regulator norR n=21 Tax=Gammaproteobacteria RepID=NORR_SERP5 Length = 507 Score = 636 bits (1641), Expect = 0.0, Method: Composition-based stats. Identities = 334/507 (65%), Positives = 399/507 (78%), Gaps = 4/507 (0%) Query: 1 MSFSVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLA 60 M+ S+ LA+IAIELQ G+ +DRFQRLI +LR +L CDASALLR++ +QF PLAIDGLA Sbjct: 1 MTLSIQSLASIAIELQSGLTQRDRFQRLINSLRSLLRCDASALLRFEGQQFRPLAIDGLA 60 Query: 61 KDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFA 120 +DVLGRRFAL+ HPRLEAIARAG VVRFPADSELPDPYDGLIPG + LKVHAC+GLPLFA Sbjct: 61 QDVLGRRFALDAHPRLEAIARAGGVVRFPADSELPDPYDGLIPGHDQLKVHACIGLPLFA 120 Query: 121 GQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFE 180 Q+LIGALT D + P QFD FSDEELRLI+ALAAGAL+NALL+E LE Q + P + Sbjct: 121 EQDLIGALTFDSLDPMQFDRFSDEELRLISALAAGALNNALLVEALERQALSPLASPGGS 180 Query: 181 AVKQ-TQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPL 239 + ++ ++IGLS M QLK+EI IVA S+LNVLI+GETG GKELV +AIH+ S RA NPL Sbjct: 181 SPRENDEIIGLSSVMQQLKQEISIVAGSELNVLITGETGVGKELVVRAIHQGSARAANPL 240 Query: 240 VYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKL 299 VYLNCAALPESVAESELFGHVKGAFTGAI +R+GKFEMADNGTLFLDEIGELSL+LQAKL Sbjct: 241 VYLNCAALPESVAESELFGHVKGAFTGAIQHRAGKFEMADNGTLFLDEIGELSLSLQAKL 300 Query: 300 LRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLR 359 LRV+QYGD+QRVGDDR RV+VR+LAATNRDL++ + G FR DL+HRLSVFPL+VPPLR Sbjct: 301 LRVIQYGDLQRVGDDRVKRVNVRILAATNRDLKQAAVDGAFRLDLYHRLSVFPLAVPPLR 360 Query: 360 ERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLAR 419 ER D+ LLAGYFCE+CR++ GL ++ LS A + L+ YS+PGN+RELEH+I+RA +LAR Sbjct: 361 ERVSDIALLAGYFCERCRIKLGLMQLTLSVQALSALEQYSWPGNIRELEHSIYRAAILAR 420 Query: 420 ATRSGDEVILEAQHFAFPEVTLPT---PEVAAVPVVKQNLREATEAFQRETIRQALAQNH 476 A +S E+ L HF LP + + +L T+ FQR I + L + Sbjct: 421 AEQSSSELQLLPAHFTIKAGALPARIIDDALPESAIGVSLATLTQHFQRSVIEKTLVECE 480 Query: 477 HNWAACARMLETDVANLHRLAKRLGLK 503 NWAA AR LE D NLHRLAKRL +K Sbjct: 481 MNWAATARKLELDSGNLHRLAKRLNMK 507 >UniRef50_O87455 Regulatory protein luxO n=68 Tax=Gammaproteobacteria RepID=LUXO_VIBC3 Length = 530 Score = 617 bits (1591), Expect = e-175, Method: Composition-based stats. Identities = 249/515 (48%), Positives = 327/515 (63%), Gaps = 15/515 (2%) Query: 3 FSVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLAKD 62 FS+ L + + L G +++RF RL+ +R+ + CD L+ + PLA+ GL +D Sbjct: 4 FSLSTLLEMTVGLASGANNEERFHRLLDAVRKAVICDCVVLMSLHNDTLTPLAMQGLTRD 63 Query: 63 VLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLI-PGQESLKVHACVGLPLFAG 121 LGRRF + HPRL I A VRF AD LPDP+DGL+ ++ L +H+C+GLPL G Sbjct: 64 TLGRRFVVSEHPRLAQICSADLPVRFAADCPLPDPFDGLLLDSEDDLPMHSCMGLPLHFG 123 Query: 122 QNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQN-----MLPGDA 176 + L+G LTLD ++PD FD S L ++AA+AA L L +LE+Q L Sbjct: 124 EQLLGILTLDSLKPDAFDHLSPRSLEILAAIAAATLKMTLTFSELENQAKQTQLRLEELN 183 Query: 177 TPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAV 236 + ++IG S M +K +I++VA S N+LI GETG GKELVA+ IH+ S R Sbjct: 184 QEAWSRDSVEIIGNSGPMLAMKADIDVVAPSQFNILIHGETGVGKELVARTIHQRSNRKR 243 Query: 237 NPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQ 296 PLVY+NCAA+PE++ ESELFGHVKGAFTGA R GKF +AD GTLFLDEIGEL L+ Q Sbjct: 244 QPLVYVNCAAIPENLLESELFGHVKGAFTGADRARMGKFALADGGTLFLDEIGELPLSAQ 303 Query: 297 AKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVP 356 +K+LR LQ +IQ VG DR VDVR+LAATNRDL++EV AGRFRADL+HRLSV+P+ VP Sbjct: 304 SKILRALQNHEIQPVGQDRVQTVDVRILAATNRDLKKEVEAGRFRADLYHRLSVYPIYVP 363 Query: 357 PLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVV 416 PLRER D+ LLAGYF EQ R + G++++ L + L Y +PGNVRELEH I+RA + Sbjct: 364 PLRERKGDLSLLAGYFVEQARRKLGITQLKLHGDVLSQLIQYPWPGNVRELEHVINRAAL 423 Query: 417 LARATRSGDEVIL----EAQHFAFPEVTLPTPEVAAVPVVKQ-----NLREATEAFQRET 467 A+A + G V + P + P P++ + LR+AT+ FQR Sbjct: 424 KAKARQRGRPVTTLKVEDLGELQGPRAAMVEPTAQDEPMLGEWIGELGLRDATDEFQRHL 483 Query: 468 IRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 I + L Q NWA AR L+TD ANL RLAKRLG+ Sbjct: 484 ISETLTQADFNWAEAARRLQTDRANLTRLAKRLGI 518 >UniRef50_C4LCC7 Transcriptional regulator, NifA subfamily, Fis Family n=22 Tax=Gammaproteobacteria RepID=C4LCC7_TOLAT Length = 521 Score = 610 bits (1573), Expect = e-173, Method: Composition-based stats. Identities = 253/512 (49%), Positives = 345/512 (67%), Gaps = 16/512 (3%) Query: 7 VLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLAKDVLGR 66 IA+ L + + +FQRL+ + VL CDA AL++ + + +P+A GLA +++G+ Sbjct: 9 AWLQIAVGLSTSMPGELQFQRLVQAICDVLPCDAVALMQLNEGELVPVAAMGLAPELIGQ 68 Query: 67 RFALEGHPRLEAIARAGDVVRFPADSELPDPYDGL--IPGQESLKVHACVGLPLFAGQNL 124 RF HPRL+AI + + VRFPAD+ELPDP+DG + + + VH+C+G L+ + L Sbjct: 69 RFLPAEHPRLQAILQEREPVRFPADAELPDPFDGWLAVDRERTADVHSCMGCSLYVDRQL 128 Query: 125 IGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLE----SQNMLPGDATPFE 180 +G LTLD + P +FD D + AALAA L N LI LE Q L + Sbjct: 129 VGVLTLDALAPGRFDDVDDMTVAAFAALAAATLRNVALIRALEHGRAQQQELAQELVRDA 188 Query: 181 AVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLV 240 ++ ++IG SP M +L++EI++VA++DL VLI+GETGTGKELVA+ +H S R+ LV Sbjct: 189 RRREGELIGNSPLMRKLREEIDMVASTDLAVLITGETGTGKELVARTLHARSRRSEQALV 248 Query: 241 YLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLL 300 ++NCAALPE +AESELFGHVKGAFTGA SNR+GKFE+AD GTLFLDEIGEL L+LQAKLL Sbjct: 249 HVNCAALPEQIAESELFGHVKGAFTGATSNRAGKFELADGGTLFLDEIGELPLSLQAKLL 308 Query: 301 RVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRE 360 R LQ G+IQRVG D+ LRV+VR++AATNRDL +EV GRFR+DL+HRL V+P++VPPLRE Sbjct: 309 RALQQGEIQRVGSDKLLRVNVRLIAATNRDLEQEVADGRFRSDLYHRLKVYPIAVPPLRE 368 Query: 361 RGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARA 420 D+ L+ YF +Q R R GL ++ L A +Q Y +PGNVRELEH + RA + A Sbjct: 369 HIADLDTLSSYFLDQARTRLGLRQIGLHPQALLAMQAYDWPGNVRELEHLLMRASLKATR 428 Query: 421 TRSGDEVILEAQHFAFPEVTLP-----TPEVAAVPVV----KQNLREATEAFQRETIRQA 471 + G +IL A+H P E ++ PV+ +Q LR+A +++Q+E I Q+ Sbjct: 429 HKEGRPLIL-AEHLDLPVPVQQLTESVAAEESSTPVIALSAEQGLRDAVDSYQKELILQS 487 Query: 472 LAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 L N NW+A AR L+TD ANL+RLA+RLG+K Sbjct: 488 LEANQGNWSATARQLKTDRANLNRLAQRLGIK 519 >UniRef50_Q12MS3 Sigma-54 factor, interaction region n=2 Tax=Alteromonadales RepID=Q12MS3_SHEDO Length = 538 Score = 597 bits (1540), Expect = e-169, Method: Composition-based stats. Identities = 243/534 (45%), Positives = 320/534 (59%), Gaps = 38/534 (7%) Query: 6 DVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLAKDVLG 65 L +IA++L + + + +QR +T + QV+ CDA ALL Y + +P+A+DGL +VLG Sbjct: 4 QTLLDIALDLSQSLPKKALYQRFMTAVNQVMPCDAVALLEYQGHELVPVAVDGLLPEVLG 63 Query: 66 RRFALEGHPRLEAIARAGDVVRFPADSELPDPYDG--LIPGQESLKVHACVGLPLFAGQN 123 F+ E HPRL+AI + +RF ADSEL DPYDG +I + L VHAC+G LF Sbjct: 64 MGFSPEDHPRLQAIMASKQPIRFNADSELADPYDGYLVIDPKRVLDVHACIGCSLFVEGR 123 Query: 124 LIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPF---E 180 L+G LTLD + FD D + +AALAA + N L+ QL+ Q D + Sbjct: 124 LVGVLTLDALNVGAFDAIDDITIATLAALAAATIRNVNLLNQLDRQQYKLDDNDSVFKQK 183 Query: 181 AVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLV 240 +K++ IG +P M LK +I IVA S+L+V+I GETG GKELVA+++H S R LV Sbjct: 184 PLKKSDFIGETPCMQALKDDIRIVANSELSVIIGGETGVGKELVARSLHAQSKRRAQALV 243 Query: 241 YLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLL 300 +NCAALP+++AESELFGH KGAFTGA +R GKFE+A GTLFLDE+GELSL LQAKLL Sbjct: 244 QVNCAALPDTLAESELFGHSKGAFTGAAKDRMGKFELAHQGTLFLDEVGELSLELQAKLL 303 Query: 301 RVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRE 360 RV+Q G+IQR+G DR + VDVR++AA+NR+L + V G FR DL+HRL V+PL+VPPLRE Sbjct: 304 RVIQEGEIQRIGLDRNIHVDVRIIAASNRNLLQRVKEGLFREDLYHRLCVYPLNVPPLRE 363 Query: 361 RGDDVILLAGYFCEQCRLRQGLS---RVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVL 417 R DD+ LL G + + GLS V L+ A LQ Y +PGNVREL+H + RA + Sbjct: 364 RQDDIPLLCGNILTNLKHKIGLSSAKTVRLTQAAMQKLQGYPWPGNVRELQHVLMRAALK 423 Query: 418 ARATRSGDEVILEAQHFAFP-----------------------------EVTLPTPEVAA 448 A A G V ++ H F E Sbjct: 424 ASAEAKGITV-IQLHHLTFACEPMSQGLTELTAFNSNSPDSNPSTSDETFAAANREEKVE 482 Query: 449 VPVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 PV+ ++ + FQR+ IRQ+L N WA AR L+ D NLHR AKRLGL Sbjct: 483 PPVISRSFNDRVADFQRQVIRQSLDDNSQVWAKAARQLQLDRGNLHRQAKRLGL 536 >UniRef50_Q127H6 Transcriptional regulator, NifA subfamily, Fis family n=14 Tax=Proteobacteria RepID=Q127H6_POLSJ Length = 552 Score = 593 bits (1530), Expect = e-168, Method: Composition-based stats. Identities = 255/527 (48%), Positives = 340/527 (64%), Gaps = 31/527 (5%) Query: 5 VDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLAKDVL 64 + L + +L R + +R++RL+ +R +L CDA+ALLR D +PLA++GL+ D + Sbjct: 7 LKALVPLVDDLSREMPDGERYRRLLEAVRALLPCDATALLRLDGAALVPLAVNGLSSDTM 66 Query: 65 GRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQES-LKVHACVGLPLFAGQN 123 GRRF +E HPR + + AG +RFP D ELPDPYDGL+ G L+VH C+G P+ G+ Sbjct: 67 GRRFKVEEHPRFKRLLEAGGPMRFPVDCELPDPYDGLVEGLHGHLEVHDCMGCPVQVGEK 126 Query: 124 LIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQL--ESQNMLPGDATPFE- 180 G LT+D + +F +L+ A+LAA +S +E+L +++ T E Sbjct: 127 NWGVLTIDALNSQRFSAVDLGDLQAFASLAAATVSVVQRMERLTLRAEDERLRADTYREL 186 Query: 181 --AVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNP 238 +IG S +L +EI +V S+L VLI+GETG GKELVA+A+H ASPRA P Sbjct: 187 AAESTPPALIGQSAAHQRLLEEIAVVGNSELTVLITGETGVGKELVAQALHAASPRAARP 246 Query: 239 LVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAK 298 L+ LNCAALPE++ ESELFGHV+GAF+GA+++R GKFE+A+ GTLFLDE+GELSLA+QAK Sbjct: 247 LISLNCAALPETLVESELFGHVRGAFSGAVADRRGKFELANGGTLFLDEVGELSLAVQAK 306 Query: 299 LLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPL 358 LLRVLQ G +QR+G DR +VDVRV+AATNRDL EV AGR+RAD +HRLSV+PL VPPL Sbjct: 307 LLRVLQNGQLQRLGSDREHQVDVRVIAATNRDLAHEVRAGRYRADFYHRLSVYPLVVPPL 366 Query: 359 RERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLA 418 RERG DV+LLAGYF EQ R R GL + + A A+ L + +PGNVRELEH + R+ + A Sbjct: 367 RERGHDVLLLAGYFLEQNRSRLGLGSLRMDADAQASLLAHDWPGNVRELEHLVGRSALKA 426 Query: 419 RATRSGDEVILE--AQHFAFP--------------------EVTLPTPEVAAVPVVKQNL 456 A G IL A H P + +P AA+PV +L Sbjct: 427 LAGVPGRPRILSLTASHLDLPAPASWGASAPDASGSKDAAVQEGMPDAGGAALPV---DL 483 Query: 457 REATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 R + E QR+ I +LA++H+NWA+ AR L ANL RLAKRLGL+ Sbjct: 484 RTSMEWHQRQRIAASLARHHNNWASAARELGLHRANLVRLAKRLGLR 530 >UniRef50_Q3IJS0 Transcriptional regulator of anaerobic NO reduction and detoxification (EBP family) n=6 Tax=Gammaproteobacteria RepID=Q3IJS0_PSEHT Length = 528 Score = 585 bits (1508), Expect = e-165, Method: Composition-based stats. Identities = 242/523 (46%), Positives = 334/523 (63%), Gaps = 22/523 (4%) Query: 1 MSFSVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLA 60 MS +++ A +A++L + ++ F++L+T L V+ DASALL Q PLAI GL Sbjct: 1 MSSAINFTA-VAVKLAQSTLDKNCFEQLLTVLETVIASDASALLELQGEQLKPLAIKGLM 59 Query: 61 KDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQES-LKVHACVGLPLF 119 D LGRRF L HPRLEAI ++F D LPDPYDGL+ + + VHAC+GLPLF Sbjct: 60 PDSLGRRFKLSEHPRLEAICNTQQPLQFAHDCPLPDPYDGLLLAKTGDIPVHACLGLPLF 119 Query: 120 AGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIE--QLESQN---MLPG 174 Q L+G +T D + + F+ S + L + L + AL + +L +Q+ ++ Sbjct: 120 YQQQLLGVITFDSLNANAFNAISAQTLSTLQTLCSAHFKTALQLAHYKLHAQHSSALVQE 179 Query: 175 DATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPR 234 ++IG S + LK +I++VAAS+ +VLI GETG GKELVA+ IH S R Sbjct: 180 LNREALTRDGGEIIGQSSAIQALKNDIKLVAASNFSVLILGETGVGKELVARNIHLHSKR 239 Query: 235 AVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLA 294 + PL++LNCA+L E++AESE FGH KGAFTGA R GKF++A GTLFLDEIGEL L Sbjct: 240 SEQPLIHLNCASLAENLAESEFFGHAKGAFTGADHARQGKFQLAHGGTLFLDEIGELPLV 299 Query: 295 LQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLS 354 LQ+KLLRVLQ G+IQ VG+D VDVRV+AATNR+L++EV GRFRADL+HRLSV+PL+ Sbjct: 300 LQSKLLRVLQSGEIQTVGEDEVKYVDVRVIAATNRNLKKEVAEGRFRADLYHRLSVYPLT 359 Query: 355 VPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRA 414 V PLR+R +DV+LLAG+F EQ + + ++ LS A+ LL Y +PGNVRELEH I RA Sbjct: 360 VAPLRQRENDVVLLAGFFVEQTARKLAIKQLKLSVDAQLLLTQYQWPGNVRELEHVISRA 419 Query: 415 VVLARATRSGDEVI-LEAQH------------FAFPEVTLPTPEVAAVPVVKQN--LREA 459 + A+ ++ +I ++ +H + P T T ++ + +QN L++A Sbjct: 420 ALKAKQSQWQQAIITIKPEHCELNLSPSNTTQLSLPASTTNTTTGSSTNIAEQNLSLKQA 479 Query: 460 TEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 T+ F I Q L Q+++NWA+ AR L+ D ANL RLAKRLG+ Sbjct: 480 TDTFTHHLISQQLEQHNYNWASAARTLKVDRANLVRLAKRLGI 522 >UniRef50_Q07WT9 Transcriptional regulator, Fis family protein n=4 Tax=Gammaproteobacteria RepID=Q07WT9_SHEFN Length = 526 Score = 584 bits (1507), Expect = e-165, Method: Composition-based stats. Identities = 241/515 (46%), Positives = 320/515 (62%), Gaps = 20/515 (3%) Query: 8 LANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLAKDVLGRR 67 +I +L R + +R+ RLI +++ + CD ALL+ +P+A+ GL + L R+ Sbjct: 6 FIDIVEDLNRDLIKSERYLRLILAIQRAIPCDVVALLKLKHDHLVPVAVVGLKQQALARQ 65 Query: 68 FALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIP-GQESLKVHACVGLPLFAGQNLIG 126 F++ HPRL+ I + RF ADS LPDPYDGL+ G E L VH C+G ++ G Sbjct: 66 FSINHHPRLQQILANPHITRFDADSTLPDPYDGLVDDGSEQLHVHDCMGSTIYIDGKAWG 125 Query: 127 ALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQ--NMLPGDATPFEAVKQ 184 LTLD M+ FD + E R A A A+S + IE LE Q Sbjct: 126 VLTLDAMKAGSFDSLNPTETRAYIAAVAAAISTSEHIEALEVQVERNHQVAQCMLATAGP 185 Query: 185 TQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNC 244 + +IG S +T L EI VA SDL+VLI+GETG GKELVAK+IH+ S R+ PLV +NC Sbjct: 186 SSIIGNSVAITDLLSEINTVAVSDLSVLITGETGVGKELVAKSIHQQSRRSEQPLVQINC 245 Query: 245 AALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQ 304 AALPES+ ESELFGHVKGA++GA+S+R G+FE+AD GTLFLDE+GEL LA+QAKLLR LQ Sbjct: 246 AALPESIVESELFGHVKGAYSGAVSDRRGRFELADGGTLFLDEVGELPLAVQAKLLRALQ 305 Query: 305 YGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDD 364 G+IQRVG D + VDVR++AATNR+L+ EV GRFRADL+HRLSV+PL VPPLRERG D Sbjct: 306 NGEIQRVGSDNIIVVDVRIVAATNRNLQLEVKEGRFRADLYHRLSVYPLPVPPLRERGKD 365 Query: 365 VILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVV--LARATR 422 VILLAGYF E+ + + G++++ L A L Y +PGNVRELEH + RA + ++ R Sbjct: 366 VILLAGYFLEKSQHQLGVAKLRLQQTAIEQLTQYHWPGNVRELEHLLSRAALRAISEQGR 425 Query: 423 SGDEVILEAQHFAFPEVTLPT--PEVAAVPVVKQN-------------LREATEAFQRET 467 + + H V T P +A V ++ N LR++T+ +QR+ Sbjct: 426 HASIISISRVHLGSEFVVSHTVAPAIAEVDIINDNNAAAALSQVLTLGLRDSTDEYQRQI 485 Query: 468 IRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 I+ LA N AA AR L+ D +NL R +RLGL Sbjct: 486 IQTVLATERGNLAAVARSLQLDRSNLIRTMRRLGL 520 >UniRef50_Q9K4U8 Nitric oxide reductase transcription regulator norR2 n=45 Tax=Proteobacteria RepID=NORR2_RALEH Length = 521 Score = 578 bits (1492), Expect = e-163, Method: Composition-based stats. Identities = 244/513 (47%), Positives = 308/513 (60%), Gaps = 19/513 (3%) Query: 10 NIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLAKDVLGRRFA 69 + +L + H R QRL++ LR C A ALLR + P+A+DGL +D LGRRFA Sbjct: 9 ELLADLVTDLPHAVRLQRLVSMLRTHFRCGAVALLRLEEDHLRPVAVDGLVRDALGRRFA 68 Query: 70 LEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQ--ESLKVHACVGLPLFAGQNLIGA 127 + HPRL AI V F DS LPDPYDGLI E L VH C+G L GA Sbjct: 69 VGLHPRLAAILARRGVTCFHHDSMLPDPYDGLIDEHVGEPLPVHDCMGTSLAVDGQPWGA 128 Query: 128 LTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQT-- 185 LTLD + FD + EL+ + + A+ L ++ + + G E Q Sbjct: 129 LTLDALAIGTFDAAAQAELQRLTVIVEAAIRTTRLEGEIRALQLARGTPEADEGTAQHGD 188 Query: 186 ---QMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYL 242 ++IG S + L E+E+VA +DL VL+ GETG GKEL A +H S R PLV++ Sbjct: 189 IGGEIIGQSEAIANLLHELEVVADTDLPVLLLGETGVGKELFAHRLHRQSRRRAQPLVHV 248 Query: 243 NCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRV 302 NCAALPES+AESELFGH +GAF+GA R G+FE AD GTLFLDE+GEL LA+QAKLLR Sbjct: 249 NCAALPESLAESELFGHARGAFSGATGERPGRFEAADGGTLFLDEVGELPLAIQAKLLRT 308 Query: 303 LQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERG 362 LQ G+IQR+G DR RV+VRV+AATNR+LRE V G FRADL+HRLSV+P+ +PPLRERG Sbjct: 309 LQNGEIQRLGSDRPRRVNVRVIAATNRNLREHVRDGSFRADLYHRLSVYPIPIPPLRERG 368 Query: 363 DDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVV--LARA 420 +DV+LLAG F E R R GL + LS GA++ L+ Y +PGNVRELEH I RA + ++R Sbjct: 369 NDVLLLAGRFLELNRARLGLRSLRLSGGAQDALRSYRWPGNVRELEHVISRAALRAVSRG 428 Query: 421 TRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQ----------NLREATEAFQRETIRQ 470 D V LE + + +P A + LR+A E QR I Q Sbjct: 429 AGRNDIVTLEPELLDLDGLEVPAAHHAGAGMASAFAAPALAAGITLRDAVEQTQRACIEQ 488 Query: 471 ALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 AL NWA AR L D +NLH+LA+RLG K Sbjct: 489 ALKDQGGNWAQAARQLGIDASNLHKLARRLGCK 521 >UniRef50_B3Q676 Transcriptional regulator, NifA subfamily, Fis Family n=9 Tax=Bacteria RepID=B3Q676_RHOPT Length = 561 Score = 571 bits (1472), Expect = e-161, Method: Composition-based stats. Identities = 177/507 (34%), Positives = 257/507 (50%), Gaps = 20/507 (3%) Query: 5 VDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAID--GLAKD 62 + +L I L + ++ +RQ + ++ YD D GL ++ Sbjct: 52 LQILFRINQVLTQNADLATLVSIILDGMRQQMRMQRGVMMLYDRHSDAIFIHDSFGLTEE 111 Query: 63 VLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVH--ACVGLPLFA 120 GR G + G + P + PD D + K A +P+ Sbjct: 112 ERGRGIYAPGEGITGKVVETGKPIIIPRVIDSPDFLDRTRAHNKGRKQDKLAFFCVPIVL 171 Query: 121 GQNLIGALTLDGMQPDQFDVFSD-EELRLIAALAAGALSNALLIE----QLESQNMLPGD 175 Q ++G + + + +Q + D E L ++A+L A A+ L+ +LE++N Sbjct: 172 AQKVLGTICAERVYMNQRLLNQDAELLAMVASLIAPAVELYLIENVDKVRLETENRRLKS 231 Query: 176 ATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRA 235 + + +IG S M ++ + VA++ VL+ GE+G GKELVA A+H SP A Sbjct: 232 ELK-QRFRPANIIGNSKPMQEVYAMVHKVASTKATVLLLGESGVGKELVASALHYNSPVA 290 Query: 236 VNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLAL 295 P + NCAALPE++AESELFGH +GAFT AI+ G FE A GT+FLDE+GELSL Sbjct: 291 DGPFIKANCAALPEALAESELFGHERGAFTSAIATHKGYFEQASGGTIFLDEVGELSLPT 350 Query: 296 QAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSV 355 QAKLLRVLQ +RVG + ++VDVR++AATNR+L E V G FR DLF+RL+VFP+++ Sbjct: 351 QAKLLRVLQERTFERVGGAKPVKVDVRIIAATNRNLAEMVAEGTFREDLFYRLNVFPITI 410 Query: 356 PPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAV 415 PPLR+RG DVI LA +F G +S A N+L Y +PGNVRELE+ I R+V Sbjct: 411 PPLRDRGSDVITLADHFVTTYSAEIGKPIKRISTPAINMLMSYHWPGNVRELENVIERSV 470 Query: 416 VLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQN 475 +LA +E ++ P + PT L + A + E I +AL + Sbjct: 471 ILA------EEGVIHGYDLP-PSLQTPTETGTG---FSGTLEDRVTAVEYEMIVEALKAS 520 Query: 476 HHNWAACARMLETDVANLHRLAKRLGL 502 + N A L L +R GL Sbjct: 521 NGNVGQAATTLGLTRRMLGLRMERHGL 547 >UniRef50_Q1R0E5 Transcriptional regulator, NifA subfamily, Fis family n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1R0E5_CHRSD Length = 522 Score = 558 bits (1439), Expect = e-157, Method: Composition-based stats. Identities = 240/522 (45%), Positives = 305/522 (58%), Gaps = 20/522 (3%) Query: 1 MSFSVDVLANIAIELQRGIGHQ---DRFQRLITTLRQVLECDASALLRYDSRQFIPLAID 57 M+ + L ++ +L G +R+ RL+ L DAS L+ P+A+ Sbjct: 1 MTAFLHTLRDLLADLSAGHSRDPLPERWARLLAALVGSYPADASTLMVAHDDGLQPVAVL 60 Query: 58 GLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLP 117 GL +V GRRFAL+ HPRL AIA V RFP DS LPDP+DGL+ S VH C+G+ Sbjct: 61 GLDDEVRGRRFALDAHPRLAAIAAHPGVCRFPLDSTLPDPFDGLLDDASS-HVHDCMGVA 119 Query: 118 LFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQ-NMLPGDA 176 L G L+G LTLD + P D+EL A L A L A + S+ N Sbjct: 120 LRDGDRLLGMLTLDALTPGCLAAIDDDELLAAAGLMATCLRLAQQLSDTRSRLNQALDQT 179 Query: 177 TPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAV 236 +A + ++ SP M QL + + +VA +D++VL+ GETG GKE +A+ +H S R Sbjct: 180 FDHDAPRHSEPAWHSPAMRQLDESLALVAPTDMSVLLHGETGVGKERLARRVHALSSRRK 239 Query: 237 NPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQ 296 PLV +NCAALPE++ ESELFGH +GAF+GA+ + G F MA GTL LDEIGEL L +Q Sbjct: 240 GPLVRVNCAALPEALIESELFGHRRGAFSGAVRDHRGHFAMAHEGTLMLDEIGELPLTMQ 299 Query: 297 AKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVP 356 KLLRVLQ G+IQ +G + RV+VRV+A TNR L +EV AGRFR DL+HRLSVFPL VP Sbjct: 300 PKLLRVLQEGEIQPLGSETPQRVNVRVIAVTNRALDQEVAAGRFRKDLYHRLSVFPLRVP 359 Query: 357 PLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVV 416 PL ER DDV+LLAG F E R+R G++ + L A L + +PGN+RELEH + RA + Sbjct: 360 PLCERRDDVLLLAGGFLEDNRIRLGVANLRLEPEAERALLAWHWPGNIRELEHTLGRAAL 419 Query: 417 LARATRSGDE--------VILEAQHFAFPEVTLPTPEVAAVPVVKQN-------LREATE 461 A R D V + H P P P A VV LREA E Sbjct: 420 RAFGERPRDTRHARRDAVVRIATHHLELPSSEAPIPRPADANVVTSTEAAPSMPLREAVE 479 Query: 462 AFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 AFQR+ I +AL + NWAA AR L TD NLHRLAKRLGLK Sbjct: 480 AFQRQHIARALDTHDGNWAATARALRTDSGNLHRLAKRLGLK 521 >UniRef50_A3ER00 Transcriptional regulator, NifA, Fis Family n=3 Tax=Leptospirillum RepID=A3ER00_9BACT Length = 553 Score = 556 bits (1435), Expect = e-157, Method: Composition-based stats. Identities = 175/523 (33%), Positives = 262/523 (50%), Gaps = 29/523 (5%) Query: 5 VDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSR--QFIPLAIDGLAKD 62 + I+ EL +R++ + + L S++L ++ + GL+++ Sbjct: 11 LTAFFAISRELASSPDLDGALKRILEIMDEKLGLHRSSILLLENDSDELRTEIAHGLSEE 70 Query: 63 VLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQE--SLKVHACVGLPLFA 120 + + EG A+ + GD + P S P + E S A + +PL Sbjct: 71 EIRKGRFKEGEGITGAVLKTGDPIVVPDISREPRFLNRTGSRSERASRGKLAFLAVPLTF 130 Query: 121 GQNLIGALTLDG-MQPDQFDVFSDEELRLIAALAAGALSNALLIEQ-LESQNMLPGDATP 178 +G L+ D ++P ++ DEELR++ +++ +L +Q +E + L A Sbjct: 131 QARKVGVLSADCTIEPGSGNL--DEELRVLTTISSIIAQAVILRKQFVEERKKLEERALR 188 Query: 179 FE-----AVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASP 233 E IG S M Q+ + + +VA S VLI GE+GTGKE+VAKAIH SP Sbjct: 189 LEHHLKDRYSIEGWIGRSRIMQQISESVHLVAKSRATVLIMGESGTGKEVVAKAIHFNSP 248 Query: 234 RAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSL 293 R P V +NCAA+PES+ ESELFGH KGAFTGA +R GKFE A GTLFLDE+GE+S Sbjct: 249 RNRRPFVQINCAAIPESLLESELFGHEKGAFTGAHVSRPGKFEQAHEGTLFLDEVGEISP 308 Query: 294 ALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPL 353 A+Q KLLRVLQ ++RVG + + VDVR++AATNR+L E + +FR DL++RL+V P+ Sbjct: 309 AVQVKLLRVLQERVVERVGGTKTIPVDVRIIAATNRNLEEAIRKNQFREDLYYRLNVVPI 368 Query: 354 SVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHR 413 +PPLR+R +D+ LL +F + G S + +S A + L + +PGNVRELE+ + R Sbjct: 369 YLPPLRQRKEDIPLLVNHFLGRFNQENGRS-MTISPEAISALIEHDWPGNVRELENTMER 427 Query: 414 AVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQN--------------LREA 459 VV+ +A + FP EV P + + L EA Sbjct: 428 LVVMTQADSIDITDVRRTLAL-FPSTLPHRREVEEKPASRDSGKENGSSLKGESLLLPEA 486 Query: 460 TEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 +R I L + A +L L + G+ Sbjct: 487 VSELERAKILDVLDRTGWIKTRAAALLGITPRQLGYRMMKYGI 529 >UniRef50_P12626 Nitrogen fixation protein anfA n=11 Tax=Bacteria RepID=ANFA_AZOVI Length = 533 Score = 554 bits (1429), Expect = e-156, Method: Composition-based stats. Identities = 174/488 (35%), Positives = 246/488 (50%), Gaps = 18/488 (3%) Query: 22 QDRFQRLITTLRQVLECDASALLRYDSRQFIPLAID--GLAKDVLGRRFALEGHPRLEAI 79 D ++ ++Q L+ + YD R D GL ++ R G + Sbjct: 48 ADALSIVLGVMQQHLKMQRGIVTLYDMRAETIFIHDSFGLTEEEKKRGIYAVGEGITGKV 107 Query: 80 ARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFD 139 G + E PD + A +P+ Q ++G + + + + Sbjct: 108 VETGKAIVARRLQEHPDFLGRTRVSRNGKAKAAFFCVPIMRAQKVLGTIAAERVYMNPRL 167 Query: 140 VFSDEELRLIAALAAGALSNALLIE-----QLESQNMLPGDATPFEAVKQTQMIGLSPGM 194 + D EL + A L LIE +LE++N A E K + +IG S M Sbjct: 168 LKQDVELLTMIATMIAPLVELYLIENIERVRLENENRRLKHALK-ERFKPSNIIGNSKPM 226 Query: 195 TQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAES 254 ++ + I VA++ VLI GE+G GKELVA AIH SP A LV NCA LPE++AES Sbjct: 227 QEVYELIHKVASTKATVLILGESGVGKELVANAIHYNSPNAEAALVTSNCAPLPENLAES 286 Query: 255 ELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDD 314 ELFGH KG+FTGA++ G FE AD GT+FLDE+GELS +QAKL+RVLQ +RVG Sbjct: 287 ELFGHEKGSFTGALTMHKGCFEQADGGTIFLDEVGELSPTVQAKLVRVLQNRTFERVGGS 346 Query: 315 RCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCE 374 + ++VDVR++AATNR+L E V G FR DL++RL+VFP++VPPLRERG DVI LA +F Sbjct: 347 KPVKVDVRIIAATNRNLVEMVEQGTFREDLYYRLNVFPITVPPLRERGSDVIALADHFVS 406 Query: 375 QCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHF 434 G + +S A N+L Y +PGNVRELE+ + RAV+L+ + Sbjct: 407 AFSRENGKNVKRISTPALNMLMSYHWPGNVRELENVMERAVILSDDDVI--------HSY 458 Query: 435 AFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLH 494 P + E L E +A + E I +AL + + A+ L L Sbjct: 459 NLPPSLQTSKESGTA--FGLTLEEKIKAVECEMIVEALKNSSGHIGEAAKELGLARRMLG 516 Query: 495 RLAKRLGL 502 +R G+ Sbjct: 517 VRMERYGI 524 >UniRef50_C8QWL5 Transcriptional regulator, NifA, Fis Family n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QWL5_9DELT Length = 539 Score = 553 bits (1426), Expect = e-156, Method: Composition-based stats. Identities = 168/506 (33%), Positives = 265/506 (52%), Gaps = 18/506 (3%) Query: 5 VDVLANIAIELQRGIGHQDRFQRLITTLRQV--LECDASALLRYDSRQFIPLAIDGLAKD 62 + L I EL + +++ L + L A ++ + Q G+ + Sbjct: 33 LACLYEITRELASSADLRVCLAKILAILSRQKGLNNGAVTIINPLTGQIETEVAHGITVE 92 Query: 63 VLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFAGQ 122 + G + +G + P SE P D + + + + +P+ G Sbjct: 93 ARKKGTYRIGEGITGRVVASGAPIVVPRISEEPLFLDRTSARRSRGEELSFICVPIRRGP 152 Query: 123 NLIGALTLDGMQPDQFDVFSD-EELRLIAALAAGALSNALLI----EQLESQNMLPGDAT 177 + IGAL++D + + D L +++ L A + L+ ++LE +N Sbjct: 153 DTIGALSVDREYREGEEFEQDLRFLTILSGLVAQTVKRVQLVNQEQQRLEQENSQLRREL 212 Query: 178 PFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVN 237 E + + ++ S M ++ + I VAAS+ VL+ GE+GTGK +VA+A+H S RA Sbjct: 213 -SEKYRVSSILSNSSRMQEVLEMIHRVAASNATVLLRGESGTGKSMVARAVHHNSKRAAG 271 Query: 238 PLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQA 297 P + +NC+ALPE++ ESELFGH +GAFTGA R G+FE+A+ GTLFLDEIGELS A+Q Sbjct: 272 PFITVNCSALPETLLESELFGHERGAFTGAHETRKGRFELAEGGTLFLDEIGELSTAVQV 331 Query: 298 KLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPP 357 KLL V+Q + QRVG R L+ DVR++ ATN+DL + V G FR DL++RL+VFP+ +PP Sbjct: 332 KLLSVVQDREFQRVGGSRPLKCDVRLITATNKDLEKAVAEGTFREDLYYRLNVFPIYLPP 391 Query: 358 LRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVL 417 LRER D++LLA +F E+ + +S A +LL Y +PGNVREL++ + RAV++ Sbjct: 392 LRERRTDILLLAEFFLEKFASENDKNIRRISTPAIDLLTQYHWPGNVRELQNCLERAVLI 451 Query: 418 ARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHH 477 DE +++ H + V + A E+F+RE I AL + Sbjct: 452 C------DEDTIKSYHLP----PTLQSSDSLREVSPSSFTAAVESFERELIIDALKKTDG 501 Query: 478 NWAACARMLETDVANLHRLAKRLGLK 503 N A +LET + ++ K+ ++ Sbjct: 502 NQTRAAALLETSLRIINYKIKKYAIE 527 >UniRef50_A6FFF2 Anaerobic nitric oxide reductase transcription regulator n=1 Tax=Moritella sp. PE36 RepID=A6FFF2_9GAMM Length = 502 Score = 547 bits (1411), Expect = e-154, Method: Composition-based stats. Identities = 218/502 (43%), Positives = 292/502 (58%), Gaps = 40/502 (7%) Query: 42 ALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGD------VVRFPADSELP 95 LL+ + IP A +GL + +GR F + HPR E I D V RF D ELP Sbjct: 1 MLLKLEGDNLIPKAANGLQIEAMGRHFPIAEHPRFEQILAHYDNEVQKKVHRFDTDCELP 60 Query: 96 DPYDGLIPGQE-SLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAA 154 DPYDGLI + L VH C+G L G +T+D + P +FD + L + L Sbjct: 61 DPYDGLIQTPDGQLNVHDCMGAVLVIDNKPWGIVTMDALNPQRFDSLDPKILNSMIGLTE 120 Query: 155 GALSNALLIEQLES--QNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVL 212 + A LI L+ Q A+ +MIG SP M L EI++VA SDL L Sbjct: 121 VVIKTANLIFSLDQKVQRQEQVTASLISDKFSEKMIGSSPAMNMLNLEIDLVADSDLAAL 180 Query: 213 ISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRS 272 I GE+GTGKELVA+ IH +S RA L+ +NCAALPE++ ESELFGHV GAFTGA NR Sbjct: 181 IYGESGTGKELVARRIHMSSKRAKEALITVNCAALPETMVESELFGHVAGAFTGATKNRL 240 Query: 273 GKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLR 332 GKFE+AD GTLFLDEIGEL L++QAKLLRV+Q+G++QR+G D+ +VDVR++ ATNRDL Sbjct: 241 GKFELADCGTLFLDEIGELPLSIQAKLLRVIQFGELQRLGSDKPHKVDVRLITATNRDLA 300 Query: 333 EEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGAR 392 +EV GRFR DL+HRL+V+PL+VP LRERG+D++LLAG F + + + GL+ + L+ A Sbjct: 301 KEVAEGRFRDDLYHRLTVYPLTVPNLRERGNDILLLAGSFLAKIQRKVGLNNLTLAKDAE 360 Query: 393 NLLQHYSFPGNVRELEHAIHRA--------------VVLARA-----------------T 421 L Y +PGNVRELEH + RA VVL + Sbjct: 361 RALLAYEWPGNVRELEHLLSRASLRAAARNRKNDRVVVLESSDLDIQSAIGESNASLHTN 420 Query: 422 RSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAA 481 + D ++ + V V + NL++ T+ FQ + I++ LA+++ N AA Sbjct: 421 MNTDSDVIAKGMVSVGHVAGQNDIVISTADNDNNLKQITDDFQTQFIKKVLAEHNGNSAA 480 Query: 482 CARMLETDVANLHRLAKRLGLK 503 AR + D +NLHRL KRL ++ Sbjct: 481 TARAIGVDRSNLHRLMKRLDIQ 502 >UniRef50_B3QSR6 Transcriptional regulator, NifA, Fis Family n=2 Tax=Bacteria RepID=B3QSR6_CHLT3 Length = 557 Score = 546 bits (1408), Expect = e-154, Method: Composition-based stats. Identities = 172/541 (31%), Positives = 273/541 (50%), Gaps = 57/541 (10%) Query: 9 ANIAIELQRGIGHQDRFQRLITTLRQVLECDASAL------LRYDSRQFIPLAIDGLAKD 62 + E+ R + +++ +++ + ++ L DS + + GL+ + Sbjct: 18 LTLLAEISRALINEEDINKILRLVLLIMSEHMGMLRGVITIFNRDSGEIVIKESFGLSPE 77 Query: 63 VLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHAC-VGLPLFAG 121 R G + + G V P+ ++ P D ++ K C V +P+ AG Sbjct: 78 EQARGRYKLGEGIIGQVVETGKPVVVPSIAKEPLFLDKTRSREKDEKNDLCFVCVPIRAG 137 Query: 122 QNLIGALTLDGM-------------------QPDQFDVFSDEELRLIAALAAGALSNALL 162 Q +IG L+ D + + + ++ L++ +AA L Sbjct: 138 QEVIGTLSADRKVSSKNPRVALTQTQGGKQTRGCGENGMFNSDVNLLSIIAAMISQAVRL 197 Query: 163 IEQLESQNMLP---------------------GDATPFEAVKQTQMIGLSPGMTQLKKEI 201 + +N+ + + +IG + M + K I Sbjct: 198 RQVAHEENLYHWKSNLQISAPEGKSHNSDVFDNPNSIEVGEQPANIIGNAKSMRVVFKMI 257 Query: 202 EIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVK 261 + +A ++ VLI GE+G GKELVA AIH S RA +P + NCAALPES+ ESELFGH + Sbjct: 258 DKIAPTNATVLILGESGVGKELVANAIHYKSQRAASPFIKFNCAALPESIVESELFGHER 317 Query: 262 GAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDV 321 GAFTGA + R G+FE+A+ GT+FLDE+GELSL++QAKLLR+LQ + +RVG ++ ++ DV Sbjct: 318 GAFTGASATRKGRFELANTGTIFLDEVGELSLSIQAKLLRILQEKEFERVGGNKTIKADV 377 Query: 322 RVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQG 381 R++AATNR+L EE+ G+FR DLF+RL++FP++VPPLRER D++LLA YF E+ G Sbjct: 378 RIIAATNRNLEEEIQEGKFREDLFYRLNIFPVTVPPLRERKSDILLLADYFVEKYNQMNG 437 Query: 382 LSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTL 441 +S A ++L Y +PGNVRELE+ + RAV+L+ D+ ++ H TL Sbjct: 438 KGVRRISTTAIDMLMRYHWPGNVRELENCVERAVILS------DDGVIHGYHLP---PTL 488 Query: 442 PTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLG 501 T E + P L++ +A + E I +AL N + A L + K+ Sbjct: 489 QTAESSGTPCAGP-LQQRLDALEYELIVEALKNTKGNMSKAAMELGLTDRVMGLRVKKFD 547 Query: 502 L 502 + Sbjct: 548 I 548 >UniRef50_B5ER80 Transcriptional regulator, NifA, Fis Family n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5ER80_ACIF5 Length = 545 Score = 546 bits (1407), Expect = e-154, Method: Composition-based stats. Identities = 165/534 (30%), Positives = 254/534 (47%), Gaps = 40/534 (7%) Query: 5 VDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASAL-LRYDSRQFIPLAIDGLAKDV 63 + + ++ L + + ++ TL L S + LR + +A GL+ Sbjct: 13 LTTIYEVSKVLSSSMDLEHTLNDVLKTLESHLHISPSMIVLRMNEEIVGVIAATGLSVAE 72 Query: 64 LGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFAGQN 123 + R G + I RAG + P S+ P + S ++HA VG+P+ G Sbjct: 73 IERGRYRLGEGMIGKIMRAGMPIVIPDVSQEPAFLHRAFEPEISQRLHAFVGVPIKVGYE 132 Query: 124 LIGALTLDGMQPDQFDVF--SDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEA 181 IG L + + + F L++IA L ++ I ++ + E Sbjct: 133 CIGVLAIYRSERHKGVSFRSDVRLLQMIANLVGQTVNLHQGISAERNRLLQEKHRLQKEL 192 Query: 182 VKQTQM---IGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNP 238 K+ + IG S M + ++ A VL+ GE+GTGKE++A+AIH SPR Sbjct: 193 QKRYSIKNVIGNSRAMQAVFADVHQAAPGKATVLLRGESGTGKEVIARAIHYLSPRRDKA 252 Query: 239 LVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAK 298 V LNCAALPES+ ESELFGH +GAFTGA R G+FE+AD GTLFLDEIG++S A QAK Sbjct: 253 FVSLNCAALPESILESELFGHERGAFTGATQERKGRFELADGGTLFLDEIGDISPAFQAK 312 Query: 299 LLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPL 358 LLRVLQ + +RVG + RV+VR++AATNR+L E V G FRADL++R++V + +PPL Sbjct: 313 LLRVLQEREFERVGGTQTRRVNVRIIAATNRNLEEAVSKGEFRADLYYRINVVSIFLPPL 372 Query: 359 RERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLA 418 RER +D+ L +F + + L+ A + +PGNVRELE+ + R + Sbjct: 373 RERREDIPALIEHFLARYNAENQRK-LTLTPEALQTMVSCYWPGNVRELENCVERTATMM 431 Query: 419 RATRSGDEVI-----------------------------LEAQHFAFPEVTLPTPEVAAV 449 R + + + A P+V + + Sbjct: 432 RGDIIRNLDVPCQRNQCLSMALRPLEGSHPIVTMKLSSGMSVPPHAAPDVEGQVTDASGA 491 Query: 450 PVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 + +L + +R+ + QA+ + A AR+L T L + G++ Sbjct: 492 GDGEGSLPLS----ERDRLIQAMDRCGWVQAKAARLLGTTTRKLGYALNKHGIE 541 >UniRef50_B0SC18 Transcriptional regulator n=7 Tax=Bacteria RepID=B0SC18_LEPBA Length = 705 Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats. Identities = 156/532 (29%), Positives = 275/532 (51%), Gaps = 37/532 (6%) Query: 7 VLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQ--FIPLAIDGLAKDVL 64 L I+ + + + F ++ T+ + L + +++ ++ + +A GL+ + + Sbjct: 175 TLIEISKVVSSTLDQNEVFDSIMVTMEKSLRLEKGSIVLFNKEEALLRIVAASGLSPEEI 234 Query: 65 GRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPG---QESLKVHACVGLPLFAG 121 + G + +G+ + + + PD + + + + + P+ + Sbjct: 235 EKGTYQPGEGITGKVYESGEPIIIESVASHPDFLNRVGYLSHFKHDPHNVSLLCAPILSE 294 Query: 122 QNLIGALTLDGMQPDQFDVFS-DEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFE 180 Q +G + +Q D+ S + L+++A++ + ++ L+E+ + + E Sbjct: 295 QTTLGVVNAFIVQNKHTDLKSFLDFLQVVASIISQSIKIQNLVEEAKKEISRENIQLKRE 354 Query: 181 ---AVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVN 237 K +IG + M ++ ++I++VA S +VLI+GE+GTGKE++A AIH S R+ N Sbjct: 355 LKNKYKFGSLIGKAASMEKMFEKIQLVADSRASVLITGESGTGKEMIANAIHYNSSRSEN 414 Query: 238 PLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQA 297 P V +NCAA+PE++ ESELFGH KG+FTGA++++ GKFE+AD GT+FLDEIGE+ L LQ+ Sbjct: 415 PFVKINCAAIPENLLESELFGHKKGSFTGAVTDKKGKFELADTGTIFLDEIGEMDLNLQS 474 Query: 298 KLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPP 357 KLLRVLQ +I+ +G + +VDVR++AATN +L + V +FRADLF+RL+V ++ PP Sbjct: 475 KLLRVLQEREIEAIGSTKAKKVDVRIIAATNAELEQLVAEKKFRADLFYRLNVVKINTPP 534 Query: 358 LRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVL 417 LR+R +D+ LL +F E+ S +S A LL Y +PGNVRELE+ I RAVVL Sbjct: 535 LRDRVEDIPLLMNHFLEKYTKDNNKSIKGISREASRLLLKYRWPGNVRELENVIERAVVL 594 Query: 418 ARATRSGDEVILE--------------------------AQHFAFPEVTLPTPEVAAVPV 451 A+ +E + A+ L + ++ + Sbjct: 595 AQDEILNEEDFSDILSNMEEMPDNTVEVSHSNHVESVSGAEPLDLGSGRLTSGQLDGLD- 653 Query: 452 VKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 + + + I+ A+ + + A+ L + L + K L ++ Sbjct: 654 -GRAMEIVVSEVESRLIQYAMKKFRYTKTRVAKFLGINRNTLDKKIKELNIE 704 Score = 58.2 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 29/185 (15%), Positives = 66/185 (35%), Gaps = 8/185 (4%) Query: 5 VDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAI--DGLAKD 62 + + +A + + ++ Q+ ++ +L+ D +Q + A+ G+ + Sbjct: 9 IQSIHEVATAMNSTQDPDGLLELILDRCIQICAVESGSLMLIDEKQSVLDAVTSRGMNQQ 68 Query: 63 VLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFAGQ 122 +L G A G S+ PD Q ++ + + P+ Sbjct: 69 LLRETKLKIGQGITGMAASTGKAKLVNDVSKDPDYI------QVKEEIKSELVAPMIVED 122 Query: 123 NLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAV 182 ++IG ++LD + + F E + ++A A N I LE + + V Sbjct: 123 DIIGVISLDSNRLNAFTPEMLEIVSVLANQAGQIFKNLQTIRSLEQRTKIQATLIEISKV 182 Query: 183 KQTQM 187 + + Sbjct: 183 VSSTL 187 >UniRef50_Q3AR86 DNA-binding protein Fis / transcriptional regulator, Fis family n=11 Tax=Chlorobiaceae RepID=Q3AR86_CHLCH Length = 549 Score = 543 bits (1399), Expect = e-153, Method: Composition-based stats. Identities = 178/542 (32%), Positives = 275/542 (50%), Gaps = 53/542 (9%) Query: 4 SVDVLANIAIELQ--RGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLAK 61 S+ +LA ++ + I R I + ++ +L + + + GL + Sbjct: 11 SISLLAEVSRTITHEEDINKVLRLVLFIMSENMHMQRGMITILNRSTGEIVINESFGLTE 70 Query: 62 DVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHAC-VGLPLFA 120 + R G + + + G V P+ + P D ++ K C + +P+ A Sbjct: 71 EERERGRYHIGEGVIGHVVKTGKAVIVPSIQDEPLFLDRTGSRAQAKKEELCFICIPIKA 130 Query: 121 GQNLIGALTLDG--------------MQPDQFD------VFSDEELRLIAALAAGALSNA 160 G +IG L+ D Q D D F ++L +IAA+ + A+ Sbjct: 131 GSEIIGTLSADRHVEPVTADEHRRKTRQTDDRDERIDKLQFYVDQLSIIAAMISQAVRLK 190 Query: 161 LLIEQL--------------------ESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKE 200 L + S++ P + +IG + M L Sbjct: 191 QLAYEAGSKNVQDLSNLPPFAASIPPRSEDRQVNAIPPPSPDRPANIIGNTKPMVSLYSM 250 Query: 201 IEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHV 260 I+ +A + L+ GE+G GKELVA AIH S RA P + NCAALPE++ ESELFGH Sbjct: 251 IDKIAKTSATTLVLGESGVGKELVASAIHFKSRRAEKPFIKFNCAALPENIVESELFGHE 310 Query: 261 KGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVD 320 KGAFTGA++ R G+FEMA+NGT+FLDE+GELSL++QAKLLR+LQ + +RVG + ++VD Sbjct: 311 KGAFTGALATRHGRFEMANNGTIFLDEVGELSLSVQAKLLRILQEKEFERVGGSKTIKVD 370 Query: 321 VRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQ 380 VRV+AATNR+L E + G+FR DLF+RL++FP++VPPLRER D++LLA YF E+ Sbjct: 371 VRVIAATNRNLEELIRQGQFREDLFYRLNIFPITVPPLRERKTDILLLADYFVEKYNKAN 430 Query: 381 GLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVT 440 +S A ++L Y +PGNVREL++ I RAV+L+ ++ ++ H T Sbjct: 431 QKGVRRISTTAIDMLMRYHWPGNVRELQNCIERAVILS------EDNVIHGYHLP---PT 481 Query: 441 LPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRL 500 L T E + P +L++ +A ++E I +AL + N + A L + K+ Sbjct: 482 LQTAESSGTP-YTGSLQQKLDAIEKEMIIEALKRTQGNMSRAAMQLGLSERIMGLRIKKF 540 Query: 501 GL 502 + Sbjct: 541 NI 542 >UniRef50_Q2LXW8 Nif-specific regulatory protein with sigma 54 interaction domain n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LXW8_SYNAS Length = 513 Score = 542 bits (1398), Expect = e-152, Method: Composition-based stats. Identities = 174/501 (34%), Positives = 263/501 (52%), Gaps = 16/501 (3%) Query: 5 VDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDA--SALLRYDSRQFIPLAIDGLAKD 62 + L IA L + +D+ +R++ + Q + +LL +S + G+ Sbjct: 9 LAALHAIARTLAQPGELRDQLERVLQEMNQRVGMQRGMISLLDRESGEVWLDVAHGVDIQ 68 Query: 63 VLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQ-ESLKVHACVGLPLFAG 121 + + G +A+ G + + D + + A + +P+ Sbjct: 69 GMEVSYQP-GEGITGKVAQTGRPMAVANLGQETHFLDRTGARRFLNRSELAFLCVPIIYD 127 Query: 122 QNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEA 181 ++G L+ D D+ D EL +++++ + ++ ++ I LE +N Sbjct: 128 NRVVGVLSADKAARQVEDL--DRELAMLSSI-SELIAKSVHIRALEEENRRLRHMLGRST 184 Query: 182 VKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVY 241 V +++IG S M ++ I VA S+ VLI+GETGTGKELVA+AIH+ S R PL+ Sbjct: 185 VPDSEIIGHSRVMQEVFGLIAQVADSNTTVLINGETGTGKELVARAIHDRSSRCKGPLIQ 244 Query: 242 LNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLR 301 +NCAA+P+++ ESELFGH KGAFTGA+ R G+FE A GT+FLDE+GELS A QAKLLR Sbjct: 245 VNCAAMPDTLIESELFGHEKGAFTGALHARRGRFEEAHGGTIFLDEVGELSAAAQAKLLR 304 Query: 302 VLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRER 361 V+Q Q +G R + VDVR++AATNR+L E+V G FRADL++RL+VFP+ +PPLRER Sbjct: 305 VIQEKKFQPLGASRVVSVDVRIIAATNRNLEEDVAVGHFRADLYYRLNVFPIYLPPLRER 364 Query: 362 GDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARAT 421 G D+ILLA YF + G S +S +S+PGNVRELE+ I RAV+LA Sbjct: 365 GSDIILLADYFVLKYNKIMGKSVKRISNAVLEAFLSHSWPGNVRELENCIERAVLLATGD 424 Query: 422 RSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAA 481 +E H +L E+ +R I AL ++H N + Sbjct: 425 S------IETLHLP---PSLQIRSREGEKKESGKFNAMIESQERAMIVDALKESHGNQSQ 475 Query: 482 CARMLETDVANLHRLAKRLGL 502 AR+L T + ++ G+ Sbjct: 476 AARILGTTKRIIQYKIQKFGI 496 >UniRef50_B6WRE4 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WRE4_9DELT Length = 521 Score = 539 bits (1390), Expect = e-152, Method: Composition-based stats. Identities = 169/504 (33%), Positives = 248/504 (49%), Gaps = 20/504 (3%) Query: 12 AIELQRGIGHQDRFQRLITTLRQVLEC--DASALLRYDSRQFIPLAIDGLAKDVLGRRFA 69 I+ R I H + ++ + Q L L+ + + GL R Sbjct: 17 VIDHSRDISHS--LEATLSLMAQHLHMMRGMITLVSPHTGEIRIEVAHGLNPAEQRRGHY 74 Query: 70 LEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFAGQNLIGALT 129 G + ++G + S P + A + +P+ ++GAL+ Sbjct: 75 ALGEGVTGRVIQSGQPMVVSNVSASPIFLNRTRSRDLQKDTIAFICVPIKFEDEVLGALS 134 Query: 130 LDGMQPDQFDVFSDEELRLIAA----LAAGALSNALLIEQLESQNMLPGDATPFEAVKQT 185 +D + D + DE + I A AA A N + + + ++ Sbjct: 135 VDRVFADAVTLEEDERILTIIASMIAHAARARQNVMDERVAAIEENMRLRNALSAPLRPH 194 Query: 186 QMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCA 245 +G S M + ++I VA S VL+ GE+GTGKEL A AIH A R+ P + LNCA Sbjct: 195 GFVGNSDAMRLVYEQISQVAPSSTTVLLYGESGTGKELAAHAIHSAGKRSKGPFISLNCA 254 Query: 246 ALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQY 305 ALPE++ ESELFGH KGAFTGA R G+FE+AD GTLFLDE+GELSL QAKLLRVLQ Sbjct: 255 ALPENLIESELFGHEKGAFTGASGIRKGRFELADGGTLFLDEVGELSLLTQAKLLRVLQE 314 Query: 306 GDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDV 365 +R+G L VDVR++ ATNRDL V G FR DL++RL+VFP+ +PPLRER +D+ Sbjct: 315 RCFERLGGTESLSVDVRIITATNRDLARMVEEGTFRRDLYYRLNVFPIHMPPLRERQNDI 374 Query: 366 ILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGD 425 LA YF ++ G S + +S ++LQ Y++PGN+RELE+ + RAV+L G Sbjct: 375 QPLAAYFVDKYAAANGRSGIRISLAVMDMLQRYTWPGNIRELENVMERAVLL-----VGQ 429 Query: 426 EVILEAQHFAFPEVTLPTPEVAAVP-------VVKQNLREATEAFQRETIRQALAQNHHN 478 + ++ QH + P A L++ + +R I ALA++ + Sbjct: 430 DGLILPQHLPRELHSTHCPFGPAAHKGPVEPYAASGTLQDRLDELERACITDALARHKGH 489 Query: 479 WAACARMLETDVANLHRLAKRLGL 502 A+ L + K+ G+ Sbjct: 490 MGHAAQALGLTERVMALRMKKHGI 513 >UniRef50_D0MEW0 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MEW0_RHOM4 Length = 495 Score = 538 bits (1388), Expect = e-151, Method: Composition-based stats. Identities = 168/505 (33%), Positives = 259/505 (51%), Gaps = 23/505 (4%) Query: 4 SVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAID---GLA 60 S+D L IA + + ++++ + LE + +L + AI Sbjct: 9 SLDALVEIAQTINTLRDPEAVLEKVLEIAMETLEAERGFILLKAPQHPEGFAIRSQRNFT 68 Query: 61 KDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFA 120 LG + + + R G+ V + D G ++ + +PL Sbjct: 69 DQQLGELVRIS-TSVVHEVLRRGEPVLVYEAQQ--DERYGKAESIVLQRIQSIACVPLRI 125 Query: 121 GQNLIGALTLDGM-QPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPF 179 + LIGA+ LD + Q +F + L A AA A+ NA L + L +N Sbjct: 126 KERLIGAIYLDSLSQRGRFTRDNLPFLEAFAHQAAIAIENAQLYQALREENRRLRSEIQ- 184 Query: 180 EAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPL 239 +++G SP M ++ + V +D VLI GE+GTGKEL+A+AIH S R P Sbjct: 185 RLHGFDEIVGQSPAMREVFDTMARVLDTDATVLIEGESGTGKELIARAIHYNSERKDKPF 244 Query: 240 VYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKL 299 V + C +LP+ + ESELFG+ KGAFTGA+S++ G FE+AD GT+FLDE+G+LS +Q L Sbjct: 245 VVVFCGSLPDELLESELFGYKKGAFTGALSDKKGLFEVADGGTVFLDEVGDLSPRMQTAL 304 Query: 300 LRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLR 359 LRVLQ G+I+RVGD + +VDVRV++ATN+ LRE V G+FR DL++RL+ ++VPPLR Sbjct: 305 LRVLQEGEIRRVGDTQVRKVDVRVISATNKPLRELVQQGKFREDLYYRLNTIQITVPPLR 364 Query: 360 ERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLAR 419 R D+ LLA +F ++ +++ + A LL+ Y +PGNVRELE+ I RAVVLAR Sbjct: 365 HRRGDIPLLAHHFLDKYAVKKRAHIKGFTPEALELLERYHWPGNVRELENTIERAVVLAR 424 Query: 420 ATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNW 479 ++ + P+ P +P + +R + + L ++ N Sbjct: 425 GE------LITPEDLRLPDTDGADPFEPDLP---------LKEVERRVVLRTLKRHGGNI 469 Query: 480 AACARMLETDVANLHRLAKRLGLKD 504 + AR+L LH K +++ Sbjct: 470 SETARVLGVSRRWLHYKLKEWDVQN 494 >UniRef50_A0LFR7 Transcriptional regulator, NifA subfamily, Fis Family n=7 Tax=Deltaproteobacteria RepID=A0LFR7_SYNFM Length = 508 Score = 537 bits (1385), Expect = e-151, Method: Composition-based stats. Identities = 174/501 (34%), Positives = 266/501 (53%), Gaps = 16/501 (3%) Query: 5 VDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDA--SALLRYDSRQFIPLAIDGLAKD 62 + L IA + R +D+ Q+ + L L + ++L + + G+ + Sbjct: 10 LRTLHEIARVVSRSAELKDQLQQTLDILSSRLGMERGMVSVLDLQTGEAWLDVARGVDVE 69 Query: 63 VLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQE-SLKVHACVGLPLFAG 121 R+ G +A++G + + D + + + A + +P+F Sbjct: 70 RGTIRYRP-GEGITGKVAQSGRPMGIANLGDEALFLDRTGARRSLNREELAFLCVPIFYQ 128 Query: 122 QNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEA 181 +G L+ D + D+ D+E+ +++A+A L + +E +N Sbjct: 129 GRSVGVLSADKLARRVEDL--DKEVEILSAVAE-LLGKVVHFRAVEEENSRLRRMLAEAR 185 Query: 182 VKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVY 241 T +IG S + ++ + I+ VA ++ VLISGETGTGKELVA+AIH+ S RA PLV Sbjct: 186 RPTTNIIGRSKVIQEVLRAIDQVADTNTTVLISGETGTGKELVARAIHDNSRRAKGPLVQ 245 Query: 242 LNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLR 301 +NCAA+P+++ ESELFGH KGAFTGA++ R G+FE A GT+FLDE+GELS QAKLLR Sbjct: 246 VNCAAMPDTLLESELFGHEKGAFTGAVTRRRGRFEEAQGGTIFLDEVGELSPIAQAKLLR 305 Query: 302 VLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRER 361 VLQ + Q +G R ++VDVRV+ A+N+DL +EV G FR+DL++RL+VFP+ +PPLRER Sbjct: 306 VLQEREFQPLGSSRTVKVDVRVITASNKDLEKEVALGTFRSDLYYRLNVFPIFLPPLRER 365 Query: 362 GDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARAT 421 G D++LLA YF + ++ A ++L Y +PGNVRELE+ I RAV+LA Sbjct: 366 GPDILLLADYFVLKYARELDKDVKRITTSAIDMLMCYHWPGNVRELENCIERAVLLAGGN 425 Query: 422 RSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAA 481 + TL V V + L AF+R+ I AL N + Sbjct: 426 AVDSWHLPP---------TLQMKPVGMQNVSRGKLEALVSAFERDLITDALKDVRGNQSQ 476 Query: 482 CARMLETDVANLHRLAKRLGL 502 AR+L T + ++ G+ Sbjct: 477 AARLLGTTKRIVQYKVEKYGI 497 >UniRef50_P27713 Nif-specific regulatory protein n=3 Tax=Burkholderiales RepID=NIFA_HERSE Length = 542 Score = 534 bits (1376), Expect = e-150, Method: Composition-based stats. Identities = 160/530 (30%), Positives = 252/530 (47%), Gaps = 28/530 (5%) Query: 1 MSFSVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASAL-LRYDSRQFIPLAIDGL 59 ++ + + I+ L + + ++ L LE L L DS + ++ GL Sbjct: 10 VNLELVTIYEISKILGSSLDLSKTLREVLNVLSAHLETKRVLLSLMQDSGELQLVSAIGL 69 Query: 60 AKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESL-KVHACVGLPL 118 + + G I + + ++ P P Q +V + VG+P+ Sbjct: 70 SYEEFQSGRYRVGEGITGKIFQTETPIVVRDLAQEPLFLARTSPRQSQDGEVISFVGVPI 129 Query: 119 FAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATP 178 A + ++G L + D E+RL+ +A L + ++ + Sbjct: 130 KAAREMLGVLCVFR-DGQSPSRSVDHEVRLLTMVANLIGQTVRLYRSVAAERQQLQEEKR 188 Query: 179 F------EAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEAS 232 K +IG+S M ++ ++ A S +L+ GE+GTGKE++A+AIH S Sbjct: 189 QLSRQLQGKYKLDNVIGISKAMQEVFAQVHQSAPSRSTMLLRGESGTGKEVIARAIHYLS 248 Query: 233 PRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELS 292 PR P + +NCAAL E++ ESELFGH KGAFTGA R G+FE+A GTLFLDEIGE+S Sbjct: 249 PRKDGPFIKVNCAALSETLLESELFGHEKGAFTGAQGERKGRFELAHGGTLFLDEIGEIS 308 Query: 293 LALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFP 352 A QAKLLRVLQ + +RVG R ++VDVR++ ATNRDL + V G FRADL++R++V Sbjct: 309 PAFQAKLLRVLQEREFERVGGSRSIKVDVRLVTATNRDLEKAVAKGEFRADLYYRINVVS 368 Query: 353 LSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIH 412 + +PPLRER +D+ L +F E+ R+ + V +S A ++ + +PGNVRELE+ + Sbjct: 369 IFIPPLRERREDIPYLVEHFLEKFRVENQRAMVAMSPQAMKVMMNCYWPGNVRELENCVE 428 Query: 413 RAVVLARATRSGD-----------EVILEAQHFAFPEVTLPTPEVAAV--------PVVK 453 R + R + +L P V +P ++A Sbjct: 429 RTATMMRGDLITEVHFSCQQNKCLTKVLHEPGQQQPVVVVPLERISAPYGAIFAEWDGQG 488 Query: 454 QNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 Q A +RE + A+ Q A AR L + ++ ++ Sbjct: 489 QATGAAPPTSERERLIWAMEQCGWVQAKAARALNISPRQMGYALQKFNIE 538 >UniRef50_B8IZX3 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 RepID=B8IZX3_DESDA Length = 522 Score = 533 bits (1374), Expect = e-150, Method: Composition-based stats. Identities = 165/501 (32%), Positives = 250/501 (49%), Gaps = 12/501 (2%) Query: 5 VDVLANIAIELQRGIGHQDRFQRLITTLRQVLEC--DASALLRYDSRQFIPLAIDGLAKD 62 + +L +A + + + + + L A L+ + + A GL Sbjct: 19 LSLLYELAQIMNFTTDLTQALDKALKLMARQLHMMRGAITLISPHTGEIRTEAGYGLKPA 78 Query: 63 VLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFAGQ 122 L R + G + +G + SE P + S + + + +P+ Sbjct: 79 ELRRGRYVRGEGITGRVIESGRPMYISNVSEEPLFLNRTRSRDLSKEGISFICVPIRLND 138 Query: 123 NLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAV 182 ++GAL++D + D+ + + L I +S L LE+Q + + + + Sbjct: 139 QVVGALSVDHLLVDEATLEDEMRLLTI-------VSTLLGHAALETQGRMDEETS--SPL 189 Query: 183 KQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYL 242 + +G S GM ++ +I VA S V + GE+GTGKEL A+AIH S RA P + L Sbjct: 190 RPRGFVGNSEGMQKVYAQIAQVAPSVTTVFLQGESGTGKELAARAIHSGSARAGKPFISL 249 Query: 243 NCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRV 302 NCAALPE++ ESELFGH +GAFTGA + R G+FE+A GTLFLDE+GELSL QAKLLRV Sbjct: 250 NCAALPENLIESELFGHERGAFTGASATRKGRFELAHGGTLFLDEVGELSLMTQAKLLRV 309 Query: 303 LQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERG 362 LQ +R+G VDVR + ATNR+L V FR DLF+RL+VFP+ +PPLR R Sbjct: 310 LQERAFERLGGMETHYVDVRFITATNRNLEHMVAKESFRRDLFYRLNVFPIYLPPLRGRP 369 Query: 363 DDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAV-VLARAT 421 +D++ LA +F + G V LS ++LQ Y++PGN+RELE+ + RAV +L R Sbjct: 370 EDILPLANHFIRKFAQANGRENVRLSLSVMDMLQRYAWPGNIRELENVMERAVLLLGREG 429 Query: 422 RSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAA 481 + + A H A AA P +L++ + +R +I +AL + Sbjct: 430 LVLPQHLPPALHGAHCAGISGESACAARPGFSGSLQDQLDELERASIVEALEFSQGQMGK 489 Query: 482 CARMLETDVANLHRLAKRLGL 502 A L + K+ + Sbjct: 490 AAASLGLTERIMALRMKKYEI 510 >UniRef50_B8FJT8 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=B8FJT8_DESAA Length = 464 Score = 533 bits (1373), Expect = e-150, Method: Composition-based stats. Identities = 143/380 (37%), Positives = 217/380 (57%), Gaps = 17/380 (4%) Query: 129 TLDGMQPDQFDVFSD----EELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQ 184 +++ ++ FD + +EL ++S A+ ++LE +N + + + Sbjct: 94 SVEAIKMGAFDYITKPVKFDELL-------HSVSTAIKFKRLERENTILKKQLK-KKYRF 145 Query: 185 TQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNC 244 +G SP + ++ + IE VA +D VLI+GE+GTGKEL+A+AIH SPR +P+V +NC Sbjct: 146 ENFVGDSPQIQRVFELIEKVADTDSTVLITGESGTGKELIARAIHYNSPRRDDPMVIINC 205 Query: 245 AALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQ 304 A+PE + ESELFGH KGAFTGA R G+FE+A+ GT+FLDEIG++S LQ KLLRV+Q Sbjct: 206 GAIPEELLESELFGHEKGAFTGAHKTRIGRFEVANGGTIFLDEIGDMSPNLQVKLLRVIQ 265 Query: 305 YGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDD 364 +R+G R + VD+R+LAATN+DL E V FR DL++RL+V P+ VPPLR+R D Sbjct: 266 EQAFERIGSTRTMHVDIRILAATNKDLMEAVEKKEFREDLYYRLNVIPIEVPPLRDRKSD 325 Query: 365 VILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSG 424 + LL +F + + +S A N L + +PGNVRELE+ + R ++L+ SG Sbjct: 326 IPLLIDFFINKLAAEKERPVKRISQAAMNALMGHHWPGNVRELENVVERVLILS----SG 381 Query: 425 DEVILEAQHFAFPEVTLPTPEVA-AVPVVKQNLREATEAFQRETIRQALAQNHHNWAACA 483 D + E + PE +P A E +++ I QAL + + A Sbjct: 382 DTIDKEDLPATILGLDSKEPEAGLKLPSGGIRFDHAVEEYEKNLIVQALEEANWVKTQAA 441 Query: 484 RMLETDVANLHRLAKRLGLK 503 ++L + L KR ++ Sbjct: 442 KLLHINRTTLVEKMKRKNIR 461 >UniRef50_Q73KY8 Sigma-54 dependent transcriptional regulator, putative n=1 Tax=Treponema denticola RepID=Q73KY8_TREDE Length = 505 Score = 530 bits (1366), Expect = e-149, Method: Composition-based stats. Identities = 165/504 (32%), Positives = 255/504 (50%), Gaps = 15/504 (2%) Query: 5 VDVLANIAIELQRGIGH-QDRFQRLITTLRQVLECDASALLRYD--SRQFIPLAIDGLAK 61 ++ L N ++ + ++++ + V+E DA++LL + + G K Sbjct: 12 LNTLINTSLLINSNYSDLSVLLEKIVESAMDVVEGDAASLLMLEPDGERLRFEIAIG-PK 70 Query: 62 DVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFAG 121 + ++ L+ + + P +D + K + +P+ Sbjct: 71 GIEAKKMVLDLDGIAGWVIKYNRSAIINDVLSDPR-FDPTVQKVTGYKNRNMIAVPMRIK 129 Query: 122 QNLIGALT-LDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFE 180 IG + L+ + FD L L A A A NA E+ + + D + Sbjct: 130 DECIGVIEVLNKREEKDFDSDDLNVLELFATQTAIAYQNAKHYEKSREEIICLQDQLE-Q 188 Query: 181 AVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLV 240 I S M + + +AASD +VLI GE+G GKEL+A+ +H S R NP + Sbjct: 189 DRGYHTFIAKSKVMNEKLELCRNIAASDASVLILGESGVGKELIAEQLHLNSRRVNNPFI 248 Query: 241 YLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLL 300 +NCAALPE + ESELFGHV+GAFT AIS+R G+FE+AD GT+FLDEIG++ L LQ KLL Sbjct: 249 RVNCAALPEGLLESELFGHVRGAFTDAISDRKGRFELADKGTIFLDEIGDIPLTLQTKLL 308 Query: 301 RVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRE 360 RVLQ +RVG ++ L VD R++AATN+++ E V G+FR+DL++RL+V P+ +PPLR Sbjct: 309 RVLQEMAFERVGSNKTLTVDTRIIAATNKNIEELVRQGKFRSDLYYRLNVLPIYIPPLRN 368 Query: 361 RGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARA 420 R DD+ LA +F ++ + S A L+ YS+PGN+RELE+A+ RA VL + Sbjct: 369 RKDDIQELAHFFLKKFSKEVKKPFLGFSPDAEKLINAYSWPGNIRELENAVERACVLGKP 428 Query: 421 TRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWA 480 ++ +L + E V +L+ A F++ I + L ++ N Sbjct: 429 PYIEEKDLLLKFESSSFE--------PEVNYSNPDLKSAVNDFKKSFIVKILNEHKWNQT 480 Query: 481 ACARMLETDVANLHRLAKRLGLKD 504 A A L L RL K L +K+ Sbjct: 481 AAAEKLGIQRTYLSRLIKELEIKE 504 >UniRef50_C0QE85 FhlA n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QE85_DESAH Length = 492 Score = 528 bits (1362), Expect = e-148, Method: Composition-based stats. Identities = 167/486 (34%), Positives = 266/486 (54%), Gaps = 20/486 (4%) Query: 28 LITTLRQVLECDASALLRYDSR---QFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGD 84 ++T +R+++E + + +L + R + + A K + G F+LE + AI + G Sbjct: 17 VLTAIRELIEYELAVVLSCEGRSRLRVLKAAGPAATKILEGYTFSLEDRKDIAAIVQEGK 76 Query: 85 VVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDE 144 F D Y G++ H+C+ PL+ L G LTLD ++F + Sbjct: 77 PYLFDEAEPHVDTYAGVVDFPAD---HSCMVTPLYLDDTLQGVLTLDHHSCNRFTPQNVR 133 Query: 145 ELRLIAALAAGALSNALLIEQLESQNMLPGDATPF----EAVKQTQMIGLSPGMTQLKKE 200 + ++ L + A++ + E LE +++ F A +++IG S ++K Sbjct: 134 LVGTLSKLISLAIAQSNDKEALEKEHLAILQERNFLLERNAGALSELIGNSVSWNRVKDA 193 Query: 201 IEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHV 260 +VAAS VLI GETGTGKE+VA+A+H S R P + +NC+A+ VAESELFGH Sbjct: 194 AAMVAASQTPVLIQGETGTGKEVVARAVHRLSDRKGGPFIPVNCSAISAGVAESELFGHE 253 Query: 261 KGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVD 320 KG FTGA+S+R G+FE+AD GTLFLDEIG+L L +Q KLLR LQ ++R+G + + VD Sbjct: 254 KGGFTGAVSSRKGRFELADGGTLFLDEIGDLPLEIQPKLLRALQEKKLERIGGESTISVD 313 Query: 321 VRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQ 380 VR++AA++ DL V RFR DL++RL+VFP+ +PPLRERG D+++LA YF Q R R Sbjct: 314 VRIIAASHVDLYTAVRENRFREDLYYRLNVFPIRLPPLRERGSDILILAEYFTGQIRARA 373 Query: 381 GLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVT 440 G + L+ + ++L +PGNVR+L++ + RA +L+R E I+ A Sbjct: 374 GHKDLALAPESVDILLQADWPGNVRQLQNTLERAAILSRGGVIRAEHIV-ADETPEDSFC 432 Query: 441 LPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHN---WAACARMLETDVANLHRLA 497 LP ++ A +++ + + +++ L + A +L+ LH Sbjct: 433 LPGADLDATALLRF------DVMVKAYLQKVLTRTGGKVYGKGGAAEILDLKPTTLHSKL 486 Query: 498 KRLGLK 503 K+ G++ Sbjct: 487 KKYGIR 492 >UniRef50_Q026M7 Transcriptional regulator, NifA subfamily, Fis Family n=4 Tax=Bacteria RepID=Q026M7_SOLUE Length = 706 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 171/513 (33%), Positives = 261/513 (50%), Gaps = 35/513 (6%) Query: 5 VDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDAS--ALLRYDSRQFIPLAID---GL 59 + +L + + + ++ + + ++R V++CD AL +++Q A+D G Sbjct: 201 LRLLLEVNNSIASNLELRELLRAISASIRPVMQCDGVGVALPEGENQQLRVYALDFPNGN 260 Query: 60 AKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLF 119 + + G+ + S DP D L + + A +PL Sbjct: 261 GRVREDILIPANEDSPGARAFQNGEPANILSAS--IDPTDPLATAE---GLKAVCHIPLI 315 Query: 120 AGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNAL-------LIEQLESQNML 172 + +G L+L ++P F E L L+ A A+ NAL L ++L + + Sbjct: 316 SRNRTVGLLSLARLEPVAFSPRDIEFLSLVGNQVAIAVENALAYHEISALKDRLAQEKIY 375 Query: 173 PGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEAS 232 D E + +++G S + + +EIE VA +D VLI GETGTGKEL+A+AIH S Sbjct: 376 LEDEIRSE-LNFEEIVGRSQALRTVLQEIETVAPTDSTVLIYGETGTGKELIARAIHNLS 434 Query: 233 PRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELS 292 R+ N V LNCAA+P + ESE+FGH KGAFTGA++ R G+FE+A +GT+FLDEIGE+ Sbjct: 435 SRSRNSFVKLNCAAIPTGLLESEMFGHEKGAFTGAVAQRIGRFELAHHGTVFLDEIGEIP 494 Query: 293 LALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFP 352 L LQ KLLRVLQ + +R+G R +R D R++AATNRDL V FRADLF+RL+VFP Sbjct: 495 LELQPKLLRVLQEREFERLGSSRTMRTDARLIAATNRDLATMVEDRNFRADLFYRLNVFP 554 Query: 353 LSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIH 412 + VP LR+R +D+ LL +F +Q R G + + N+L Y +PGN+REL++ + Sbjct: 555 VQVPALRDRPEDIPLLVRHFVQQFARRMGKAVDTIPTETMNVLVRYHWPGNIRELQNLLE 614 Query: 413 RAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQAL 472 RAV+L+ ++ L P E E+ +R I +AL Sbjct: 615 RAVILSAG---------PVLKVPLNDLQLQAPAPTTA-----RKTETLESAERRHILEAL 660 Query: 473 AQNHHNWA---ACARMLETDVANLHRLAKRLGL 502 + A L + L ++LG+ Sbjct: 661 EAADWVISGPKGAAEALGLKRSTLQARMEKLGI 693 >UniRef50_C9RS71 Transcriptional regulator, NifA subfamily, Fis Family n=5 Tax=Bacteria RepID=C9RS71_FIBSS Length = 509 Score = 527 bits (1359), Expect = e-148, Method: Composition-based stats. Identities = 173/510 (33%), Positives = 256/510 (50%), Gaps = 13/510 (2%) Query: 1 MSFSVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASAL----LRYDSRQFIPLAI 56 M S+ ++ ++ I H+ ++L+ + +LE + L A Sbjct: 3 MPSSIGPEISVIQKISVAIIHERDVEKLLENVLGILESELGMLRGTFALLFGDTLKIEAS 62 Query: 57 DGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGL 116 GL + R F G +A G P + + +V A + + Sbjct: 63 RGLDETEKQRGFYRMGEGITGHVAERGLSHVIPDLRKDSRFLNRTGSRHYETQV-AFICV 121 Query: 117 PLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDA 176 PL +IG L++D D+ D L I A G +N + E + ML + Sbjct: 122 PLIHDGQVIGTLSIDRPVDGSTDLDRDVALLEIIANITGDAANECIELHGEREAMLEENR 181 Query: 177 TPFE--AVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPR 234 + + +++G M Q+ +++ VA SD VLI G +GTGKE++A+AI S R Sbjct: 182 KLRDMLSNNPGELVGNCREMRQVYEQVRQVAPSDATVLIRGGSGTGKEMIARAIVNLSAR 241 Query: 235 AVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLA 294 P + LNCAALPE++ ESELFGH KGAFTGA++ R G+ E A+ GTLFLDE+G+L++ Sbjct: 242 KDKPFITLNCAALPENLVESELFGHEKGAFTGALNRRIGRAEAANGGTLFLDEVGDLTMQ 301 Query: 295 LQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLS 354 Q KLLR LQ RVG + L DVR LAAT+R+L E + G+FR DLF+RL++FP++ Sbjct: 302 TQVKLLRFLQERTFSRVGSNEELHSDVRFLAATSRNLEELIAQGKFREDLFYRLNIFPIT 361 Query: 355 VPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRA 414 +P L +R D+ILLA +F E+ LR LS A NLL Y +PGNVRELE+ I R Sbjct: 362 MPDLAKRKSDIILLAEHFIEKMNLRYNKKVGRLSTTAINLLMSYHWPGNVRELENCIERG 421 Query: 415 VVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVK-QNLREATEAFQRETIRQALA 473 V+ A D+ I + +L V P K L + ++RE I +A+ Sbjct: 422 VLTAT-----DDCIHSYNLPPSLQTSLSVGSVGGTPSDKIAPLEVMMDNYEREIITEAIK 476 Query: 474 QNHHNWAACARMLETDVANLHRLAKRLGLK 503 +N N +A R L ++ +LG+K Sbjct: 477 RNDGNISAAGRDLGVSPRMMNYRMNKLGIK 506 >UniRef50_Q1NW39 Nif-specific regulatory protein n=2 Tax=Deltaproteobacteria RepID=Q1NW39_9DELT Length = 541 Score = 526 bits (1357), Expect = e-148, Method: Composition-based stats. Identities = 158/518 (30%), Positives = 242/518 (46%), Gaps = 18/518 (3%) Query: 3 FSVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALL--RYDSRQFIPLAIDGLA 60 + L I+ + + + L + L + + L+ DS + +A GL+ Sbjct: 13 LELQALYQISQLIGSALDISKTLNETLGVLHETLRMERATLVLEECDSGRLTIVASYGLS 72 Query: 61 KDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQE-SLKVHACVGLPLF 119 + R + I + P P + + +G+P+ Sbjct: 73 PAEIARGIYRPEEGVIGRIFASAYPFVVPDVHREPLFLNRTRARTNLPKGEISFIGVPVM 132 Query: 120 AGQNLIGALTLDGMQPDQFDVFSD-EELRLIAALAAGALSNALLI---EQLESQNMLPGD 175 +N +G L++D + + D L ++A + L+ +Q+ + Sbjct: 133 LAENPVGVLSVDRLFGPEISFEEDIRFLTVVATMIGQFLNLQRTFASSQQVLREENSQLR 192 Query: 176 ATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRA 235 + + +IG + ++ I VA S L+ GE+GTGKELVA+AIH+A PRA Sbjct: 193 RKLQDRFNRYNIIGQCKRIQEVYDYIAKVAPSRATALLLGESGTGKELVARAIHQAGPRA 252 Query: 236 VNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLAL 295 P + LNCAALPE++ ESEL GH KGAFTGA+ + G+FE+AD GTLFLDEIGEL LAL Sbjct: 253 GEPFIKLNCAALPENLLESELLGHEKGAFTGAVGQKKGRFELADGGTLFLDEIGELPLAL 312 Query: 296 QAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSV 355 QAKLLRVLQ +R+G R + VDVR++AATNR L V G FRADL++RL+V P+ + Sbjct: 313 QAKLLRVLQERTFERLGGSRTIAVDVRIIAATNRSLEAGVEEGVFRADLYYRLNVVPVVL 372 Query: 356 PPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAV 415 PPLRER +D+ LL +F + R RV +A L YS+PGNVREL++ + R V Sbjct: 373 PPLRERREDIPLLLDHFLRESN-RHNRRRVKFAAAVIRRLNEYSWPGNVRELQNLVERLV 431 Query: 416 VLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVV----------KQNLREATEAFQR 465 ++ + + P A P + ++ Sbjct: 432 IMVDGEVVNLDDLPAYLADPDPANRRCPRGFADQPAAVLPAPSWVDQGMAAGRSLWEMEK 491 Query: 466 ETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 E + AL ++ AR L + ++ ++ Sbjct: 492 EEVLAALRRHGWVQTRAARDLGITPRQMGYRIRKYAIE 529 >UniRef50_B5YH04 Transcriptional regulator n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YH04_THEYD Length = 511 Score = 525 bits (1352), Expect = e-147, Method: Composition-based stats. Identities = 149/496 (30%), Positives = 246/496 (49%), Gaps = 16/496 (3%) Query: 5 VDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDS--RQFIPLAIDGLAKD 62 + L ++ L ++ L + L+ ++ +D + +A GL ++ Sbjct: 9 LKALFEVSRVLTSSFDLAQNLYSVLEILSKELDMRRGSIFIFDKKTEEISIVAAYGLTQE 68 Query: 63 VLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFAGQ 122 + R G + + G + P + P + + + + +P+ Sbjct: 69 EMSRGRYRIGEGIVGKVIETGLPMFIPDIEKEPQFLNKTGSRPNKKGI-SFLCVPIRIED 127 Query: 123 NLIGALTLDGMQPDQFDVFSDEE--LRLIAALAAGALSNALLIEQLESQNMLPGDATPFE 180 ++G ++ D + ++ D+ L ++A+L + + +E +N++ + Sbjct: 128 EILGVISADRIYAEEQGDVDDDLRVLSVVASLIGQFIKLWESYKIMEDENIILRAQLK-D 186 Query: 181 AVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLV 240 ++G SP + K + VA++D VL+ GE+GTGKEL+AK IH S RA P V Sbjct: 187 RYNFPNLVGQSPSFQAVLKTVMKVASTDATVLLFGESGTGKELIAKTIHFQSKRAKGPFV 246 Query: 241 YLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLL 300 +NCAA+PE++ E+ELFG KGAFTGA+ R GKFE A+ GT+FLDEI EL L+LQ KLL Sbjct: 247 AINCAAIPENLLEAELFGSEKGAFTGAVK-RIGKFEQANGGTIFLDEIAELPLSLQPKLL 305 Query: 301 RVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRE 360 RVLQ ++ +G + +RVDVR+++ATN+DL EE+ G FR DLF RL+V P+ +PPLRE Sbjct: 306 RVLQERTVEPLGSSKTIRVDVRLISATNKDLSEEIRKGNFREDLFWRLNVIPIYIPPLRE 365 Query: 361 RGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARA 420 R +D+ LL Y+ + S + A +L Y +PGNVREL + I R VV+ + Sbjct: 366 RKEDIPLLVEYYLKSFCNIYRKSV-SIDEEALKVLVSYDWPGNVRELANTIERLVVMTES 424 Query: 421 TRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWA 480 ++ + + P+ ++ + L E +R I L + + N Sbjct: 425 SKI--------KVYDLPDTVRGVFKLKPYSLGDLKLPTEVEELERIRIMDTLPKFNFNIR 476 Query: 481 ACARMLETDVANLHRL 496 A+ L L+ Sbjct: 477 KTAQALGLTERQLNYR 492 >UniRef50_Q7M8U4 TRANSCRIPTIONAL REGULATOR (NIFA FAMILY) n=1 Tax=Wolinella succinogenes RepID=Q7M8U4_WOLSU Length = 512 Score = 523 bits (1347), Expect = e-147, Method: Composition-based stats. Identities = 178/506 (35%), Positives = 270/506 (53%), Gaps = 24/506 (4%) Query: 5 VDVLANIAIELQRGIGH-QDRFQRLITTLRQVLECDASAL--LRYDSRQFIPLAIDGLAK 61 + L +I++ L +G + F+ + L++ D S L +S+ A GL+K Sbjct: 18 LRALYDISLALGGSVGEVKKAFEEALGLLKRHFFLDKSVYYELSEESQTLNVFASAGLSK 77 Query: 62 DVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFAG 121 + G A+A + + + + E + + +P + Sbjct: 78 EQEFLASYKVGEGATGLAAKAREPIIVENIHQNLLFLNKSGSRNEG--EISYLAVPALSQ 135 Query: 122 QNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQ--LESQNMLPGDATPF 179 + ++G L + + + +E+ I +AA ++ A I Q E + + + + Sbjct: 136 ERILGVLGV---SLTKHSMSDFDEMVTILTIAASLMAQARRIHQSIHEEKKRISEEKLYY 192 Query: 180 --EAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVN 237 E +KQ+++IG SP + ++ + I +A S VLI GETGTGKEL+AKAIH SPR Sbjct: 193 KEELLKQSEIIGYSPPIKRVSEIIAKIAPSSATVLIRGETGTGKELIAKAIHNYSPRKEK 252 Query: 238 PLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQA 297 P + LNCAA+PE++ ESELFGH KGAFT A R G+FE+AD GTLFLDE+G+LSL LQA Sbjct: 253 PYIKLNCAAIPENLLESELFGHEKGAFTDARETRKGRFELADGGTLFLDEVGDLSLPLQA 312 Query: 298 KLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPP 357 K+LR+LQ + +RVG + ++VDVR++AATNRDL E V G FR DLF+RL+V P+ PP Sbjct: 313 KILRILQEQEFERVGGSKTIKVDVRIVAATNRDLEEMVRMGDFREDLFYRLNVIPIFSPP 372 Query: 358 LRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVL 417 LR+RGDDVILL+ YF E+ R + L+ A LL+HY +PGN+RELE++I R V+L Sbjct: 373 LRDRGDDVILLSRYFLERFCKRHAKE-LHLTPKAEELLKHYDWPGNIRELENSIERLVLL 431 Query: 418 ARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHH 477 A + +EV+L P + R E +R I +AL + H Sbjct: 432 APSESIDEEVVLSVL-----------PGRVHGYTKEVKTRADLEELERSAIIKALKECHG 480 Query: 478 NWAACARMLETDVANLHRLAKRLGLK 503 A+ L + ++ ++ Sbjct: 481 IKLQAAKKLGITNRQIGYKIQKYEIE 506 >UniRef50_P19323 Formate hydrogenlyase transcriptional activator n=72 Tax=Enterobacteriaceae RepID=FHLA_ECOLI Length = 692 Score = 522 bits (1345), Expect = e-146, Method: Composition-based stats. Identities = 161/439 (36%), Positives = 242/439 (55%), Gaps = 26/439 (5%) Query: 76 LEAIARAGDVVRFP-ADSELPDPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQ 134 E + ++ +++ + + PY+ ++ ++ LPL +G ++G L L + Sbjct: 262 TERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCE 321 Query: 135 PDQFDVFSDEELRLIAALAAGALSNAL-------LIEQLESQNMLPGDATPFEAVKQTQM 187 F + LR IA A A+ NAL L E+L +N+ + + ++ Sbjct: 322 EKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEI 381 Query: 188 IGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAAL 247 IG S M + K++E+VA SD VLI GETGTGKEL+A+AIH S R +V +NCAA+ Sbjct: 382 IGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAM 441 Query: 248 PESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGD 307 P + ES+LFGH +GAFTGA + R G+FE+AD +LFLDE+G++ L LQ KLLRVLQ + Sbjct: 442 PAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQE 501 Query: 308 IQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVIL 367 +R+G ++ ++ DVR++AATNRDL++ V FR+DL++RL+VFP+ +PPLRER +D+ L Sbjct: 502 FERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPL 561 Query: 368 LAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEV 427 LA F + R G + + A L + +PGNVRELE+ I RAV+L R Sbjct: 562 LAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGN------ 615 Query: 428 ILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATE-AFQRETIRQALAQNHHNWA---ACA 483 + P++ LP PE V A E + + I + L + + A A Sbjct: 616 ---VLQLSLPDIVLPEPETPPAATVV-----ALEGEDEYQLIVRVLKETNGVVAGPKGAA 667 Query: 484 RMLETDVANLHRLAKRLGL 502 + L L KRLG+ Sbjct: 668 QRLGLKRTTLLSRMKRLGI 686 >UniRef50_Q2RHS4 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Bacteria RepID=Q2RHS4_MOOTA Length = 748 Score = 521 bits (1344), Expect = e-146, Method: Composition-based stats. Identities = 155/374 (41%), Positives = 210/374 (56%), Gaps = 8/374 (2%) Query: 131 DGMQPDQFDVFSDEE--LRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQTQMI 188 D + S E + + LA + I QLE N K Q++ Sbjct: 371 DELNCGACGYPSCREKAVAVYHGLAENRMCLPYFIAQLEKSNFHLRQELKAFQGKFGQLV 430 Query: 189 GLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALP 248 G S M ++ + IE VA +D VLI GE+GTGKELVA+AIH S R+ P V +NCAALP Sbjct: 431 GNSAAMQEVYRLIEKVAKTDATVLIRGESGTGKELVARAIHYHSRRSEAPFVSINCAALP 490 Query: 249 ESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDI 308 E++ ESELFGH +GAFTGA++ + G FE A+ GT+FLDEIG++SL LQ+KLLRVLQ G+ Sbjct: 491 ETLLESELFGHARGAFTGAVTAKKGLFEEANEGTIFLDEIGDISLGLQSKLLRVLQEGEF 550 Query: 309 QRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILL 368 RVG+ R RV+VRVLAATNRDL + V G FR +L +RL+V + +PPLRER DD+ LL Sbjct: 551 LRVGETRPTRVNVRVLAATNRDLEKAVKDGAFRPELLYRLNVITIWLPPLRERRDDIPLL 610 Query: 369 AGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVI 428 A +F E+ R G + A + L +PGNVRELE+ I RAV+L + R Sbjct: 611 ARHFLEKSCQRLGKEVNGFTHEAMDALIRADWPGNVRELENVIERAVILTESKR------ 664 Query: 429 LEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLET 488 +E + + +EA A++ I QAL ++ A A +L Sbjct: 665 IELGDLPRQFRNMAAGASGWAFTRGMSFKEAVAAYESRLILQALEESQGVQARAAEILGL 724 Query: 489 DVANLHRLAKRLGL 502 + L+ + KR L Sbjct: 725 KRSTLNEMIKRYNL 738 >UniRef50_C0GSN4 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GSN4_9DELT Length = 519 Score = 521 bits (1343), Expect = e-146, Method: Composition-based stats. Identities = 153/508 (30%), Positives = 254/508 (50%), Gaps = 20/508 (3%) Query: 5 VDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQ--FIPLAIDGLAKD 62 ++VL I+ +++ + + ++ L L A + + A GL Sbjct: 11 LNVLHEISKVIEKALDLDKALEAILKILADSLSMKRGAFSFIEEDSGLLVISASHGLTSQ 70 Query: 63 VLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFAGQ 122 R I G P ++ P D + + G+P+ Sbjct: 71 EKNRGVYRMDEGVTGRIFSTGKPFIVPDIAKEPLFLDKTGSRSMEKERISFAGVPVTLQG 130 Query: 123 NLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQL--ESQNMLPGDA---- 176 +G LT+D + D+ +E+++L++ +AA L Q+ +N+ + Sbjct: 131 TTVGVLTVDRLFDQ--DISLEEDIQLLSIVAAMVAQFVSLNRQVKDREENLRRENQNLKT 188 Query: 177 TPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAV 236 + ++ ++G S M Q+++ +E VA + VL+ GE+GTGK L+A IHE S R Sbjct: 189 RLSSSFQRFFIVGKSSSMLQVRQMMEKVAPTRATVLLLGESGTGKTLIAGIIHELSERGK 248 Query: 237 NPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQ 296 P + +NCA+LPE++ ESELFG+ KGAFTGA ++ G+FE A GT+FLDEIGE+ LQ Sbjct: 249 FPFIKVNCASLPENLLESELFGYEKGAFTGAERSKPGRFEEAHRGTIFLDEIGEMPAGLQ 308 Query: 297 AKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVP 356 AKLLR LQ + +R+G + RVDVRV+AATN++L +EV GRFR DL++RL+VFP+ VP Sbjct: 309 AKLLRFLQEREFERLGGVKTHRVDVRVIAATNKELDKEVQEGRFREDLYYRLNVFPIWVP 368 Query: 357 PLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVV 416 LRER +D+ L +F ++ G R+VLS + + L Y +PGN+RE+E+ + + + Sbjct: 369 SLRERREDIPSLINHFLDKMAREYGR-RLVLSNSSLDYLVEYEWPGNIREMENLMEKLSI 427 Query: 417 LARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNH 476 ++ + + + +V V +Q + +++ I AL +N Sbjct: 428 MSEGQIVALKDLPS---------DMQQEKVCPGKVQEQARDHSLLDMEKKEILSALQRNS 478 Query: 477 HNWAACARMLETDVANLHRLAKRLGLKD 504 + AR L + K+ L++ Sbjct: 479 WIQSRAARELGLTQRQMGYRIKKFNLEE 506 >UniRef50_B5JMU1 Sigma-54 interaction domain family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JMU1_9BACT Length = 539 Score = 520 bits (1340), Expect = e-146, Method: Composition-based stats. Identities = 181/507 (35%), Positives = 268/507 (52%), Gaps = 20/507 (3%) Query: 5 VDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDA--SALLRYDSRQFIPLAIDGLAKD 62 + +L +I+ L++ + D + + ++ + + ++L D+ F+ GL + Sbjct: 37 LGLLFSISQTLEKSLDLGDIVRPALRRMQGFIGLERGTISILNRDTGGFLLAEAIGLPRG 96 Query: 63 VLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVG---LPLF 119 + + P LE + D V + ESL++ VG +PL Sbjct: 97 LPPANYLDMIRPILERTVESRDPVVITDLAVWARKQGVEEDVLESLRLADGVGMVSVPLK 156 Query: 120 AGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGAL----SNALLIEQLESQNMLPGD 175 + IG L+++ + L +IA++ A A A I+ L ++N + Sbjct: 157 FDEEAIGTLSIERANTNFGWESDLRILGMIASIVAQAARVRRDAAEQIQSLRAENERLQE 216 Query: 176 ATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRA 235 + +IG S M + IE VA S VLI GE+GTGKELVAKA+HE S R Sbjct: 217 EI-AHGFRPENIIGSSSTMRSVYYHIEQVANSATTVLIRGESGTGKELVAKALHEKSSRR 275 Query: 236 VNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLAL 295 P V NCAALP+S+ ESELFGH KGAFTGA++ R G+FE A+ GT+FLDEIG++SL+ Sbjct: 276 NKPFVKFNCAALPDSIIESELFGHEKGAFTGALAMRKGRFESANGGTIFLDEIGDISLST 335 Query: 296 QAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSV 355 Q KLLRVLQ + +RVG RVDVRV+AAT+R+L E + AG FR DL++RL+VFP+ + Sbjct: 336 QVKLLRVLQEREFERVGSQETRRVDVRVIAATSRNLEEMMEAGTFREDLYYRLNVFPIYM 395 Query: 356 PPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAV 415 PPLRER D+++LA +F E+ R G + +S+ A ++L Y + GNVRELE+ I RAV Sbjct: 396 PPLRERKCDILMLADHFIEKFAKRMGRKPIRISSAAIDMLVSYHWAGNVRELENCIERAV 455 Query: 416 VLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQN 475 +LA+ ++A H E + V L +A +A +RE I AL + Sbjct: 456 LLAKGQS------IKAHHLPPTLQKKSRAESSEV----ATLEDAIQALEREMIVDALKET 505 Query: 476 HHNWAACARMLETDVANLHRLAKRLGL 502 N A +R L K+ G+ Sbjct: 506 GSNLAEASRRLGLTERKAGLRVKKYGI 532 >UniRef50_A4J443 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Peptococcaceae RepID=A4J443_DESRM Length = 455 Score = 520 bits (1339), Expect = e-146, Method: Composition-based stats. Identities = 146/425 (34%), Positives = 218/425 (51%), Gaps = 22/425 (5%) Query: 84 DVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDV--- 140 D +P+ DG ++ + + L + M+ FD Sbjct: 47 KPDVLITDIRMPE-KDGFGLLEQIKSAGLNIPVILMTAFGTTEV-AIKAMKLGAFDYIVK 104 Query: 141 -FSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKK 199 F +E + A Q + + +IG SP M + K Sbjct: 105 PFDLDEFLDLIQRAVAQSDTVATFPQAQE----------PASSTGINIIGNSPSMRNVYK 154 Query: 200 EIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGH 259 +I VA S+ VLI GE+GTGKELVA+AIH S R NP + +NCA LP+S+ ESELFG+ Sbjct: 155 DIGRVADSNATVLIQGESGTGKELVARAIHYNSSRRNNPFIKVNCANLPDSLLESELFGY 214 Query: 260 VKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRV 319 KGAFTGA S + G+FE+A GT+F DEIGE+SLA QAKLLR +Q + RVG + ++V Sbjct: 215 EKGAFTGASSLKVGRFELAHEGTIFFDEIGEISLATQAKLLRAIQEKEFDRVGGTKTIKV 274 Query: 320 DVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLR 379 +VR+LAATNR L++ V G FR DLF RL+V + +PPLR+R +D+ LL +F + Sbjct: 275 NVRILAATNRKLKQSVREGEFREDLFFRLNVVNIEIPPLRDRKEDIPLLIAHFLAKYNKE 334 Query: 380 QGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEV 439 S A LL Y +PGNVRELE+ + R++++AR I+ + Sbjct: 335 FNKEIKGFSKEAIKLLIGYDWPGNVRELENVVERSIIMARGA------IIVPEDIQLGAT 388 Query: 440 TLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKR 499 P + +L++ +R+ I +AL +N+ A++L+ + +L+ K Sbjct: 389 VSQQPTELEILDENLSLKQIISDVERKVILKALEENNWCRTTVAKVLKINRRSLYAKMKE 448 Query: 500 LGLKD 504 LG+++ Sbjct: 449 LGIEE 453 >UniRef50_C9RBQ4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Ammonifex degensii KC4 RepID=C9RBQ4_AMMDK Length = 470 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 148/327 (45%), Positives = 198/327 (60%), Gaps = 8/327 (2%) Query: 181 AVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLV 240 A + +IG SP M ++ K I +A SD+ VLI GE+GTGKELVA+AIH SPR P V Sbjct: 133 APRPGTLIGCSPAMQEVYKTIGRIADSDVTVLIQGESGTGKELVAEAIHYNSPRQGKPFV 192 Query: 241 YLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLL 300 ++C A+PE++ ESELFGH KGAFTGA + + GKFE+AD GT+FLDEIG++S ALQAKLL Sbjct: 193 KIDCTAIPENLLESELFGHEKGAFTGAHTRKLGKFELADGGTVFLDEIGDISPALQAKLL 252 Query: 301 RVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRE 360 R LQ +RVG RVDVR++AATN+DL E V +G FR DL++RL+V + +PPLRE Sbjct: 253 RFLQEKAFERVGGTETRRVDVRIIAATNKDLEERVKSGLFREDLYYRLNVVEIKLPPLRE 312 Query: 361 RGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARA 420 R +D++LL YF + G L+ ++L Y++PGNVREL + RAV++AR Sbjct: 313 RKEDIMLLVDYFVSLSNRKFGKQVTGLTRSVADILLQYNWPGNVRELRNVCERAVLMARG 372 Query: 421 TRSGDEVILEAQHFAFP---EVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHH 477 E + E A E P + +P L+E +R I +AL + Sbjct: 373 NVITPESLPEYLLRAVRGRTEAWHPAEDRGVLP-----LKEMVAEMERSAILRALEEYRG 427 Query: 478 NWAACARMLETDVANLHRLAKRLGLKD 504 N A AR L L+ K LG+ D Sbjct: 428 NKTAVARALGMSRTTLYAKMKELGIAD 454 >UniRef50_A0LH02 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LH02_SYNFM Length = 510 Score = 518 bits (1334), Expect = e-145, Method: Composition-based stats. Identities = 164/496 (33%), Positives = 249/496 (50%), Gaps = 24/496 (4%) Query: 15 LQRGIGHQDRFQRLITTLRQVLECDASALLRYDSR--QFIPLAIDGLAKDVLGRRFALEG 72 + + + ++ L L + + D I A GL R + Sbjct: 20 IGQALKLDQALDTILAILSSSLAMKRATITLEDEDTGYLIIRASHGLTDAERRRGVYRKD 79 Query: 73 HPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDG 132 I ++ D P S+ P + + + +G+P+ IG L +D Sbjct: 80 EGITGLIFQSADSYVVPDISKEPLFLNKTRSRLIQKESISFLGVPILLHGKAIGVLHVDR 139 Query: 133 MQPDQFDVFSDEELRLIAALAAGALSNALLIEQLE-SQNMLPGDATP-----FEAVKQTQ 186 + D+ +E++RL++ +A L Q++ + L D +P EA + Sbjct: 140 LFGDEVPF--EEDIRLLSIVATLIAQFVSLNRQVKLREAKLLRDCSPSGKKGIEAGDRFF 197 Query: 187 MIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAA 246 M+G SP M +++ IE VA S +VL+ GE+GTGK LVA+ +HE S R+ P V +NCA+ Sbjct: 198 MVGRSPSMLVVQRHIEKVAPSKASVLLLGESGTGKTLVAQMLHELSIRSSAPFVKINCAS 257 Query: 247 LPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYG 306 LPE++ ESELFG+ KGAFTGA+ ++ G+ E A+ GT+FLDE+GEL+ ALQAKLLR LQ Sbjct: 258 LPENLLESELFGYEKGAFTGAVRSKPGRIEEAEGGTVFLDEVGELTPALQAKLLRFLQDK 317 Query: 307 DIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVI 366 + +R+G R VDVRVLAATNRDL V G FR DL++RL+VFP+ +PPLR R +D+ Sbjct: 318 EFERLGSTRTRVVDVRVLAATNRDLAAVVAEGTFREDLYYRLNVFPIQIPPLRARKEDIP 377 Query: 367 LLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDE 426 L +F ++ G ++ A LL Y +PGNVRE+E+ + R V++A G Sbjct: 378 DLLHHFLDRISREYGRRI-GITNAAMALLAGYDWPGNVREMENLVERMVIMADEDEIGVN 436 Query: 427 VILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARML 486 V+ P + L E +R+ I AL +N N A+ L Sbjct: 437 VLP------------PFLSEQMTGSGGETL-SRIEKMERKEILAALERNGWNQTRTAKEL 483 Query: 487 ETDVANLHRLAKRLGL 502 + + ++ GL Sbjct: 484 GITLRQIGYRVRKFGL 499 >UniRef50_B8FJD2 Transcriptional regulator, NifA subfamily, Fis Family n=2 Tax=Bacteria RepID=B8FJD2_DESAA Length = 1038 Score = 518 bits (1334), Expect = e-145, Method: Composition-based stats. Identities = 166/514 (32%), Positives = 257/514 (50%), Gaps = 38/514 (7%) Query: 5 VDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLAKDVL 64 ++ + + EL +D + ++ T+ ++ + A+ + P + A++++ Sbjct: 546 LEEIMKLGQELATIRNDRDLVRHILATVNRITGAERGAVFLVNKETGKPAVVLRAARNIM 605 Query: 65 GRRFALEGH----PRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFA 120 + + + A G RF +E P L E+ VH+C+ +P+ Sbjct: 606 EQDISRPEFQSSMKMVREAAFTGRA-RFR-LTEAPRQSHPL----ENKVVHSCICVPMKF 659 Query: 121 GQNLIGALTLD-GMQPDQFDVFSDEELRLIAALAAGALSNALLIEQ-------LESQNML 172 + ++G L +D + P L ++ AA AL NA + EQ LE + Sbjct: 660 RETVLGVLYVDNRIFPSALKESDIRILDFFSSQAAIALDNARIHEQNRALIRKLEEEKRY 719 Query: 173 PGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEAS 232 + E + +G + ++ +++ +AA+D VLI GETG GKEL++ AIHE S Sbjct: 720 LEEQQ-SEFQPPVEFVGECAAVRKVLNDVKKIAATDSTVLILGETGVGKELISTAIHERS 778 Query: 233 PRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELS 292 RA P + +NC+ PE + SELFGH KGAFTGA R G+FE+AD GTLFLDEIG++S Sbjct: 779 SRAGKPFIRVNCSMFPEGLIASELFGHEKGAFTGADKRRLGRFELADGGTLFLDEIGDIS 838 Query: 293 LALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFP 352 +Q +LLRVLQ + +RVG LR D R+LAATNRDLRE+V G+FR DL++RL+V Sbjct: 839 HEVQVRLLRVLQNKEFERVGGRSTLRSDFRLLAATNRDLREDVKTGKFREDLYYRLNVLS 898 Query: 353 LSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIH 412 L +PPLRER +D+ LL YF ++ G R ++ + L Y +PGNVRELE+ I Sbjct: 899 LKIPPLRERKEDIPLLVDYFLDRHAKNLGKPRGAVTPEDLDKLVAYDWPGNVRELENVIE 958 Query: 413 RAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQAL 472 R+ +L+ R + +P + + E +R I AL Sbjct: 959 RSAILSSGAR----------------LEIPDLFQSGASFALDREALSLEENERRHILWAL 1002 Query: 473 AQNHHNW---AACARMLETDVANLHRLAKRLGLK 503 + A +LE + L K+LG+K Sbjct: 1003 KKTGGKVRGPGGAAELLEINHNTLFSRIKKLGIK 1036 >UniRef50_B3DZA5 Transcriptional regulator NifA, contains GAF, AAA-type ATPase, and DNA binding domains n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DZA5_METI4 Length = 529 Score = 516 bits (1331), Expect = e-145, Method: Composition-based stats. Identities = 150/451 (33%), Positives = 228/451 (50%), Gaps = 24/451 (5%) Query: 76 LEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVH-ACVGLPLFAGQNLIGALTLDGMQ 134 +E + + G + P + P + ++ + + LP+ + IG L + + Sbjct: 76 IEQVLKNGFPIVVPDIHKEPYFSSDISHEEDGTEEPISLFCLPIRYERECIGVLVCEKKR 135 Query: 135 PDQFDVFSDEELRLIAALAAGALSNALLIEQLE--------SQNMLPGDATPFEAVKQTQ 186 + S+ L L A L ++ + P + Sbjct: 136 ESALEPLSETTLTLSLATNLFGQKIKLSMDNFKPIPFPQSLELPPPPRKNGDIQLKNNGG 195 Query: 187 MIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAA 246 +IG S M + + VA S VL+ GE+GTGKE++A+ IH SPR P + +NC+A Sbjct: 196 VIGQSKQMQAVMDLVYHVAPSRSTVLLRGESGTGKEVIARTIHYLSPRKEGPFIKVNCSA 255 Query: 247 LPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYG 306 LPE++ ESELFGH KGAFTGA+ R G+FE+A GTLFLDEIG++S A+Q KLLRVLQ Sbjct: 256 LPETILESELFGHEKGAFTGALFERKGRFELAHGGTLFLDEIGDISPAVQVKLLRVLQER 315 Query: 307 DIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVI 366 + +RVG ++ +RVDVRV+ ATN++L E VL G FRADL+ R++V +S+PPLRER +D+ Sbjct: 316 EFERVGGNKTIRVDVRVITATNKNLEEAVLKGEFRADLYFRINVVSISLPPLRERKEDIP 375 Query: 367 LLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGD- 425 LLA + + + ++ A LL + +PGNVRELE+ + RA +R + Sbjct: 376 LLADHILNKIGKELNRK-LRITPEALKLLINCHWPGNVRELENCLERAATNSRNNWIDEI 434 Query: 426 EVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQR-------------ETIRQAL 472 +V + P + +V + PVV ++ E R E I QA+ Sbjct: 435 DVACRRNQCSSPMLWKKELQVISTPVVSSEEAKSREETPRSSFFSPLISDDPKEKIIQAM 494 Query: 473 AQNHHNWAACARMLETDVANLHRLAKRLGLK 503 + A AR+L L K+ G++ Sbjct: 495 EKCGWVQAKAARLLNITPRQLGYALKKYGIE 525 >UniRef50_C0GSE0 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GSE0_9DELT Length = 730 Score = 516 bits (1330), Expect = e-145, Method: Composition-based stats. Identities = 162/411 (39%), Positives = 227/411 (55%), Gaps = 28/411 (6%) Query: 94 LPDPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALA 153 LP P +G + G++ V +PL+ L GA+ + D S E + L+ + A Sbjct: 344 LPLP-EGFVLGEKQ------VVVPLYYEDILCGAMLASCSSKCKCDSDSMELISLVLSHA 396 Query: 154 AGALSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLI 213 +G + A+L + + + E+ MIG M + + I+ VA +D+ VLI Sbjct: 397 SGTIRRAILHQ----EEIKKLKQGVSESAGFEGMIGRDYRMQTIYRLIQDVAPTDVTVLI 452 Query: 214 SGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSG 273 GE+GTGKELVAKAIH S R NP V +NC+A P ++ ESELFGH KGAFTGAI R G Sbjct: 453 QGESGTGKELVAKAIHARSSRRDNPFVVINCSAYPATLLESELFGHEKGAFTGAIRQRPG 512 Query: 274 KFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLRE 333 +FE A GT+FLDEI E+ L+ Q KLLRVLQ +R+G ++ + VDVR+LAATN+DL E Sbjct: 513 RFEQARGGTVFLDEIAEVDLSAQVKLLRVLQTQKFERLGGEKSIEVDVRILAATNKDLLE 572 Query: 334 EVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARN 393 EV AGRFR DL++RL V P+++PPLRERG+D LLA +F E+ Q +S+ A Sbjct: 573 EVKAGRFREDLYYRLDVVPINLPPLRERGNDTALLARHFLERFAAVQDKRINEISSSAMR 632 Query: 394 LLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVK 453 L YS+PGNVRELE+ + +AVVL + E + + A P Sbjct: 633 ALLDYSWPGNVRELENVMEQAVVLCKGETIALEDLPDKLQGARPAR-------------- 678 Query: 454 QNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLKD 504 R+ E ++ + + L N A L + L+ K+ G+ D Sbjct: 679 ---RKTIEDQEKNLLLETLEACGWNKKMAAERLGIGRSTLYAKLKKHGIMD 726 >UniRef50_P71229 Hydrogenase-4 transcriptional activator n=45 Tax=Enterobacteriaceae RepID=HYFR_ECOLI Length = 670 Score = 516 bits (1330), Expect = e-145, Method: Composition-based stats. Identities = 163/414 (39%), Positives = 231/414 (55%), Gaps = 12/414 (2%) Query: 99 DGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALS 158 D L+ S + + +PL G + GAL L F + + L+ IA A A+ Sbjct: 253 DPLLLLLASNGCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVG 312 Query: 159 NAL-------LIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNV 211 NA L E L+ +N + + +I S M L ++++IVA SD V Sbjct: 313 NADAWRSMTDLQESLQQENHQLSEQL-LSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTV 371 Query: 212 LISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNR 271 LI GETGTGKE++A+AIH+ SPR PLV +NCAA+P S+ ESELFGH KGAFTGAI+ Sbjct: 372 LICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTH 431 Query: 272 SGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDL 331 G+FE+AD GTLFLDEIG+L L LQ KLLRVLQ +I+R+G R + V+VRV+AATNRDL Sbjct: 432 RGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDL 491 Query: 332 REEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGA 391 + V +FR+DLF+RL+VFPL +PPLR+R +D+ LLA +F ++ + + A Sbjct: 492 WQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEA 551 Query: 392 RNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPV 451 L + +PGNVRELE+ I RAV+L R + + P + + +++ Sbjct: 552 LRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRL-LPTLNEDSALRSSMAQ 610 Query: 452 VKQNLREATEAFQRETIRQALAQNHHNWA---ACARMLETDVANLHRLAKRLGL 502 + + +R+ I Q L + + A A L L +RLG+ Sbjct: 611 LLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 >UniRef50_P40734 Formate hydrogenlyase transcriptional activator n=63 Tax=Enterobacteriaceae RepID=FHLA_SALTY Length = 692 Score = 516 bits (1329), Expect = e-145, Method: Composition-based stats. Identities = 159/438 (36%), Positives = 247/438 (56%), Gaps = 24/438 (5%) Query: 76 LEAIARAGDVVRFPADSELP-DPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQ 134 E + ++ +++ + P PY+ ++ ++ LPL +G+ ++G L L + Sbjct: 262 TERVFKSKEMLLINLNERDPLAPYERMLFDTWGNQIQTLCLLPLMSGKTMLGVLKLAQCE 321 Query: 135 PDQFDVFSDEELRLIAALAAGALSNAL-------LIEQLESQNMLPGDATPFEAVKQTQM 187 F + + LR IA A A+ NAL L E+L +N+ + + ++ Sbjct: 322 EKVFTTANLKLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEI 381 Query: 188 IGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAAL 247 IG S M + K++E+VA SD VLI GETGTGKEL+A+AIH S R+ +V +NCAA+ Sbjct: 382 IGRSEAMYNVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRSGRRMVKMNCAAM 441 Query: 248 PESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGD 307 P + ES+LFGH +GAFTGA + R G+FE+AD +LFLDE+G++ L LQ KLLRVLQ + Sbjct: 442 PAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQE 501 Query: 308 IQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVIL 367 +R+G ++ ++ DVR++AATNRDL++ V FR DL++RL+VFP+ +PPLRER +D+ L Sbjct: 502 FERLGSNKLIQTDVRLIAATNRDLKKMVADREFRNDLYYRLNVFPIQLPPLRERPEDIPL 561 Query: 368 LAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEV 427 L F + R G + + A L +PGNVRELE+ + RAV+L R Sbjct: 562 LVKAFTFKIARRMGRNIDSIPAETLRTLSSMEWPGNVRELENVVERAVLLTRGN------ 615 Query: 428 ILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWA---ACAR 484 + P++T TP+ + PV ++ +E + + + I + L + + A A+ Sbjct: 616 ---VLQLSLPDITAVTPDTS--PVATESDKEGED--EYQLIIRVLKETNGVVAGPKGAAQ 668 Query: 485 MLETDVANLHRLAKRLGL 502 L L KRLG+ Sbjct: 669 RLGLKRTTLLSRMKRLGI 686 >UniRef50_Q39TH4 Transcriptional regulator, NifA subfamily, Fis family n=1 Tax=Geobacter metallireducens GS-15 RepID=Q39TH4_GEOMG Length = 556 Score = 516 bits (1329), Expect = e-145, Method: Composition-based stats. Identities = 181/499 (36%), Positives = 253/499 (50%), Gaps = 43/499 (8%) Query: 29 ITTLRQVLECDASALLRYDSRQFIPL-----AIDGLAKDVLGRRFALEGH---PRLEAIA 80 + L + L D L+++ L D D F H P + Sbjct: 67 LQRLGEFLGADRCNLVQFSEDGSRVLVFHSWIHDDAKPDP---GFIAPDHNLFPWFAKMF 123 Query: 81 RAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQ-FD 139 G VV+F +LP I +L++ + V +P+ G ++ G L+L ++ + + Sbjct: 124 HLGKVVQFSHLDDLPAEAATDITALLALRIKSQVSVPISVGGHVFGTLSLATVRSYRSWP 183 Query: 140 VFSDEELRLIAALAAGALSNALLIEQLES--------QNMLPGDATPFEA-----VKQTQ 186 LRL+ + A AL Q+ L D T Sbjct: 184 DELVPRLRLVGEIFANALVRKQKELQIRKAFQQIKELNEELAADCTYLREEIDLNYDVHH 243 Query: 187 MIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAA 246 +IG S + ++ +I+ +A +D VLI GETGTGKELVA+AIH AS R P+V +NCA+ Sbjct: 244 IIGQSLPLKRVLAKIQQIALTDTTVLILGETGTGKELVARAIHAASQRRDRPMVKVNCAS 303 Query: 247 LPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYG 306 LP ++ ESELFGH KGAFT A + G+FE AD TLFLDEIGEL L QAKLLRVLQ G Sbjct: 304 LPANLIESELFGHEKGAFTSAQVRQIGRFEFADRNTLFLDEIGELPLESQAKLLRVLQEG 363 Query: 307 DIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVI 366 + +R+G R L+VDVR++AATNRDL EEV GRFR DL++RL++FP++VPPLRER +D+ Sbjct: 364 EFERLGSSRTLKVDVRIVAATNRDLEEEVRKGRFRQDLWYRLNIFPITVPPLRERTEDIP 423 Query: 367 LLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDE 426 LL F + + G S + AG LQ Y +PGNVRELE+ I RA + + Sbjct: 424 LLINLFVNKFGRKLGKSIRRIPAGVMKSLQAYDWPGNVRELENVIERAAI--------NT 475 Query: 427 VILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNW---AACA 483 V Q + +L T + AA R E +R I Q LA + A Sbjct: 476 VGPSLQLLDNLKSSLVTEKTAAP-------RLTLEEAERSHILQVLADTNGRIEGPKGAA 528 Query: 484 RMLETDVANLHRLAKRLGL 502 +L + + L ++LG+ Sbjct: 529 LILGINHSTLRARMRKLGI 547 >UniRef50_C8W392 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W392_DESAS Length = 459 Score = 515 bits (1328), Expect = e-144, Method: Composition-based stats. Identities = 146/427 (34%), Positives = 230/427 (53%), Gaps = 9/427 (2%) Query: 78 AIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFAGQNLIGA--LTLDGMQP 135 I D LPD DG+ + ++ V + L G + + M+ Sbjct: 39 KIMETEFPDTVLLDIRLPDA-DGIEVMDKLKQMGIEVPVILM---TAFGTTEIAIQAMKQ 94 Query: 136 DQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMT 195 D + L A+ ++ +++L S+ + + E IG S M Sbjct: 95 GAHDYLNK---PLNLDELVLAVQKSIKMQRLVSEVAILREELDQETDSVDSFIGQSRHMQ 151 Query: 196 QLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESE 255 + K I V SD+ VLI GE+GTGKE+VA+ IH S R+ P + +NCA +PE + ESE Sbjct: 152 DVFKTIGKVVDSDITVLIQGESGTGKEVVARTIHSNSRRSSRPFIKINCATIPEQLMESE 211 Query: 256 LFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDR 315 LFGH KG+FTGA+S ++GKFE+A NG +FLDEIGEL L QAKLLRVLQ + +RVG + Sbjct: 212 LFGHEKGSFTGAVSQKAGKFEIAHNGIVFLDEIGELPLHTQAKLLRVLQEKEFERVGGTK 271 Query: 316 CLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQ 375 + VDVR+LAATNR+L + V G+FR DL++RL+V + +PPLRER +D+ LL YF ++ Sbjct: 272 SIEVDVRILAATNRNLEDMVQEGKFREDLYYRLNVVNVKLPPLRERKEDISLLINYFVKK 331 Query: 376 CRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFA 435 + + +S A + Y++PGNVRE+++ +AVV+AR + + + + Sbjct: 332 FARKYNKNISGISQEAMIFAEKYAWPGNVREIKNVCEQAVVMARNSVLMLDDMPLIGNGN 391 Query: 436 FPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHR 495 +++ K++L++ +++ I ++L +N+ N A+ L + +L+ Sbjct: 392 GFLEFKNNAKISLDTNDKRSLKDIVAEVEKQVILKSLNENNWNRQNTAKALGLNRRSLYA 451 Query: 496 LAKRLGL 502 K L Sbjct: 452 KMKEYDL 458 >UniRef50_Q893M0 Putative sigma-54 interacting protein n=1 Tax=Clostridium tetani RepID=Q893M0_CLOTE Length = 595 Score = 515 bits (1328), Expect = e-144, Method: Composition-based stats. Identities = 126/325 (38%), Positives = 195/325 (60%), Gaps = 7/325 (2%) Query: 180 EAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPL 239 + + +MIG S M +L + IE VA ++N++++GE+GTGKELV +A+H R NP Sbjct: 277 DKIGFKEMIGQSNSMKELYELIEKVADKNVNIMVTGESGTGKELVVRALHYGGERRDNPF 336 Query: 240 VYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKL 299 V +NCAA+P+ + ESELFGH KGAFTGA R G+FE+A GTLFLDEIG++ L++QAK Sbjct: 337 VKVNCAAMPKDILESELFGHEKGAFTGADKKRVGRFELAHKGTLFLDEIGDMDLSIQAKF 396 Query: 300 LRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLR 359 LR++Q + +RVG ++ ++VDVR++ ATN+DL++EV GRFR DL++RL+ L VPPLR Sbjct: 397 LRIIQQQEFERVGGNKTIKVDVRIICATNKDLKKEVKEGRFREDLYYRLNTITLYVPPLR 456 Query: 360 ERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLAR 419 ER +D+ L +F ++ + +S + L Y +PGNVRELE+A+ RA++L Sbjct: 457 ERKEDIPFLIHHFLKEKGKKFDKIAPKISPEVFDALMEYDWPGNVRELENAMERAIILC- 515 Query: 420 ATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLRE-ATEAFQRETIRQALAQNHHN 478 + ++ + V + V +++E +RE I +AL + N Sbjct: 516 -----GKDLIRLNNLPISIVKNNKEFDESKHVTPIDIKEITIRNMEREIIIEALEKCDWN 570 Query: 479 WAACARMLETDVANLHRLAKRLGLK 503 ++ L L+ K ++ Sbjct: 571 RTKTSKSLGISRRTLYNKMKEFNIR 595 >UniRef50_B6YRB5 Nif-specific regulatory protein n=1 Tax=Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 RepID=B6YRB5_AZOPC Length = 521 Score = 515 bits (1326), Expect = e-144, Method: Composition-based stats. Identities = 148/506 (29%), Positives = 243/506 (48%), Gaps = 20/506 (3%) Query: 5 VDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQ---FIPLAIDGLAK 61 + L+N+ L +D + ++ L L+ ++ R + GL Sbjct: 17 LTFLSNMGDLLNEMEDPKDALEGILKNLCGFLKA-FVGMITLHDRLSGMLMTSVSYGLTA 75 Query: 62 DVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFAG 121 + + G + +A S+ + + A + +P+ Sbjct: 76 EEKMKAIYQTGEGIIGRVAATRKPAIISDISKDSVFLNRTGIVSTERPM-AFLCVPVINK 134 Query: 122 QNLIGALTLDGMQPDQFDVFSDEEL-----RLIAALAAGALSNALLIEQLESQNMLPGDA 176 L+G L++ + D +E++ LI + + +E+L +N L Sbjct: 135 NELVGTLSIHKVNDRGMDFSYEEKILTIIGSLIGKHISVRRRHIEELEELRRENQLLQSQ 194 Query: 177 TPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAV 236 + + + M+G S M +L ++ VA ++ V+I GE+G GKEL+A+AIH+AS R Sbjct: 195 SIEKPFRPDNMVGNSALMRELYGLVKRVAPTNSTVIIRGESGVGKELIAEAIHKASSRIK 254 Query: 237 NPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQ 296 P V +NC+ALPE++ ESELFG+ KGAFTGA SG+FE+AD GT+FLDEI ++ ++Q Sbjct: 255 KPFVRVNCSALPENLIESELFGYEKGAFTGAERQHSGRFELADGGTIFLDEIADIPFSVQ 314 Query: 297 AKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVP 356 KLLR+LQ +R+G ++ DVR++ ATNR+L E + FR DL++R+ VFP+ VP Sbjct: 315 VKLLRILQQRQFERIGGTHTIQTDVRIVTATNRNLEEMLQNNTFREDLYYRIHVFPIYVP 374 Query: 357 PLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVV 416 LRER D+ +L +F ++ + + +++GA ++L YS+PGNVRELE+ I RA++ Sbjct: 375 ALRERRADITILTDHFIQKINKQNQTNVKRITSGALDMLMMYSWPGNVRELENVIERAMI 434 Query: 417 LARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNH 476 L + P V++ V L +R+ I L N Sbjct: 435 LTTDDVI--------HSYNLPPSL--QTGVSSDTVKVGRLDLVLGKVERQMIMDTLIANR 484 Query: 477 HNWAACARMLETDVANLHRLAKRLGL 502 N A A L + KR + Sbjct: 485 GNVAKSAFQLGISERVMGLRIKRYNI 510 >UniRef50_C1F0X6 Sigma-54 dependent transcriptional regulator, Fis family n=3 Tax=Bacteria RepID=C1F0X6_ACIC5 Length = 781 Score = 515 bits (1326), Expect = e-144, Method: Composition-based stats. Identities = 165/524 (31%), Positives = 251/524 (47%), Gaps = 51/524 (9%) Query: 14 ELQRGIGHQDRFQRLITT-----------LRQVLECDASALLRYDSRQFIPLAIDGLAKD 62 +L R + + R + + ++Q+L AS++ R + + + + +K+ Sbjct: 270 KLTRDLTERRRAEEALLAELSVSVLPGLKIQQMLHAVASSMQRIVAHDYASITLLDQSKN 329 Query: 63 VLGRRF---ALEGHPRLE-----------AIARAGDVVRFPADSELPDPYDGLIPGQESL 108 VL A + P +E A+ + + P+ + P D L S Sbjct: 330 VLHSYILSAAGDSGPEMELSVAPESSPEAAVLHTHEALFLPSLQDSSFPQDALRHALSS- 388 Query: 109 KVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLES 168 +HA LPL + GAL + P + S L +AA A + QL + Sbjct: 389 GIHAAWWLPLVHEGRVAGALCIGVRNPKTLEHVSRHTLTQMAAQIALTIQGINAARQLSA 448 Query: 169 QNMLPGDATPF------EAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKE 222 Q + + +++G + ++ K++E VA +D LI GETGTGKE Sbjct: 449 QTQKLKEEKRYLEEELRTEYSFEEIVGNGESLRRVLKQVETVAPTDATTLILGETGTGKE 508 Query: 223 LVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGT 282 L+A+AIH S R + V +NC+++P + ESELFGH KGAFTGAI R G+ E+A GT Sbjct: 509 LIARAIHNLSARDGHTFVKVNCSSIPTGLLESELFGHEKGAFTGAIQQRIGRLELAHQGT 568 Query: 283 LFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRA 342 LFLDEIG+L L LQ KLLR LQ +I+R+G R + VD R+LAAT+RDL V G+FR+ Sbjct: 569 LFLDEIGDLPLDLQPKLLRALQEKEIERLGGRRTIPVDFRLLAATHRDLARMVKDGQFRS 628 Query: 343 DLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPG 402 DL++RL VFP+ +PPLR+R +D+ L YF + R + + L + +PG Sbjct: 629 DLYYRLKVFPILLPPLRQRREDIPELVNYFVAKHARRMNKHIEEIPEPVMSALVRWHWPG 688 Query: 403 NVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEA 462 N+RELE+ + RAV+L R P + P E+ + + + EA Sbjct: 689 NIRELENFLERAVILTRG----------------PLLRAPLSELQELNIETDEPQSTLEA 732 Query: 463 FQRETIRQALAQNHHNW---AACARMLETDVANLHRLAKRLGLK 503 +R I Q L A L L+ K+LG++ Sbjct: 733 AERAHILQVLRDCDGVIAGAGGAAERLGLKRTTLNSRMKKLGIE 776 >UniRef50_C7PQF6 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PQF6_CHIPD Length = 1082 Score = 514 bits (1325), Expect = e-144, Method: Composition-based stats. Identities = 169/532 (31%), Positives = 270/532 (50%), Gaps = 53/532 (9%) Query: 6 DVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLAKDVLG 65 ++L + + ++ R G + + L+ + + + +++ + A L DV Sbjct: 560 EILLSFSADIARTRGAEALIAVMRQRLKSIFHFNDITVGIFNAEK---TAFKVLVADVEE 616 Query: 66 RRFALEGHPRLEAIARAGDVV-------RFPADSELPDPYDGLI---PGQE-------SL 108 RR HP + IA A + +D + L+ PG+ Sbjct: 617 RR---TSHPEFKEIAFAEYPIADGIHDMLLHSDKPELFYIENLLMKNPGRHPGIQFIFER 673 Query: 109 KVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALL------ 162 + G+ L IG +T+ + + F L+ I+ A A++N L Sbjct: 674 GIKEIAGVKLVNQNEDIGFITMLSEERNSFRHRDLHLLKGISDQVAVAVANILADEKIGQ 733 Query: 163 --------IEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLIS 214 E+LE + + T +IG P M ++ + V+ + VLI Sbjct: 734 QLKEINGYKEKLEEEKLYLQQEI-SSVYTHTDIIGAGPEMQRVFHMLSQVSFAQSTVLIL 792 Query: 215 GETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGK 274 GETGTGKEL+A+AIH SPR +V +NCAALP ++ ESELFGH +G+FTGAI R GK Sbjct: 793 GETGTGKELIARAIHNGSPRKNKLMVKVNCAALPANLIESELFGHERGSFTGAIERRIGK 852 Query: 275 FEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREE 334 FE+A++GTLFLDEIGE+ L LQ KLLR +Q +I+R+G ++ DVR++AATNR+L++E Sbjct: 853 FELANHGTLFLDEIGEMPLDLQVKLLRAIQEREIERIGGKSTIKTDVRIIAATNRNLQKE 912 Query: 335 VLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNL 394 V GRFR+DL++RL+VFP+ +PPLR+R +D+ LLA +F E+ G + LS+ A Sbjct: 913 VAEGRFRSDLYYRLNVFPIVLPPLRDRKEDISLLAAHFIERFARSTGRKNIKLSSTAMKQ 972 Query: 395 LQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQ 454 L Y++PGNVRELEH + R+++L + I+ H + P+ A ++ Sbjct: 973 LTAYNWPGNVRELEHVLERSILLTQGN------IIREIHLSS------QPKSEAKVRQEE 1020 Query: 455 NLREATEAFQRETIRQALAQNHHNW---AACARMLETDVANLHRLAKRLGLK 503 + + +R+ I L + A +L V+ L+ ++LG++ Sbjct: 1021 DFSRTLDEMERDYILGVLNKCKGKIFGPGGAAEILGLHVSTLNHRIRKLGIQ 1072 >UniRef50_C1SIC3 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SIC3_9BACT Length = 540 Score = 513 bits (1323), Expect = e-144, Method: Composition-based stats. Identities = 156/532 (29%), Positives = 264/532 (49%), Gaps = 37/532 (6%) Query: 4 SVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSR--QFIPLAIDGLAK 61 +++ + I++ L Q R + + L + +L +D + A GL Sbjct: 10 ALNTIYEISVILNSSNMIQHSLYRSLLQMSDTLSMERGLILLHDKDTNELFVEASIGLDN 69 Query: 62 D---VLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPL 118 D V R+ + + + + G + P + P + L + ++ + + +P+ Sbjct: 70 DEGPVKNMRYKADE-GVVGKVFKYGIPILIPDVQKEPMFLNKLGRNAKKEEI-SFIAVPI 127 Query: 119 FAGQNLIGALTLDGMQPDQFDVFSDEE-LRLIAALAAGALSNALLI----EQLESQNMLP 173 G L +D + + + +D + L++IA L A L E ++ + Sbjct: 128 KHQNQTYGVLAVDKVVSKMYSITTDVDILKMIATLMASFLHKVQFFTSEMEAIQQEKSRI 187 Query: 174 GDATP------FEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKA 227 + + + ++G M ++ ++++V ASD VLI GE+GTGKE+VAK Sbjct: 188 EEEKLKLIGEVTQKYQYEGLVGSGRLMRKVLDKVQMVTASDSAVLIRGESGTGKEVVAKT 247 Query: 228 IHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDE 287 IH S R P V +NCAA+P + ESELFG+ KGAFTGA + GKFE AD GT+FLDE Sbjct: 248 IHYNSNRRKKPFVAVNCAAIPGELIESELFGYSKGAFTGAAGEKKGKFEQADGGTIFLDE 307 Query: 288 IGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHR 347 IG++ + Q+KLLRVLQ ++++G + ++VDVR+LAATN++L V +G FR DL++R Sbjct: 308 IGDMPMEAQSKLLRVLQDKVVEKLGGTKPVQVDVRILAATNKNLEAAVQSGEFRLDLYYR 367 Query: 348 LSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVREL 407 L+VF + +PPLR+R +D+ +A + + R + +S A L + ++PGN+REL Sbjct: 368 LNVFAIFLPPLRKRKEDIPEIAQHILKNLSKRYNKN-YTISPEAVTALMNCNYPGNIREL 426 Query: 408 EHAIHRAVVLARATRSGDEVI------LEAQHFAFPEVTLP----TPEVAAVPVVKQNLR 457 E+ + R+ A + I + HF +++ TP+ +P + Sbjct: 427 ENCLERSAFTAGGGEIKTKHISCMRGEMCMSHFMEEQLSGSSTAITPQTGGIP--DNDYS 484 Query: 458 EATEAF------QRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 EA +RE + QAL + A ARML+ V ++ K+ +K Sbjct: 485 EADNELISGNMDERERVVQALEKAGWVQAKAARMLDMTVRQMNYRIKKFNIK 536 >UniRef50_A9ET26 Transcriptional regulator n=2 Tax=Myxococcales RepID=A9ET26_SORC5 Length = 648 Score = 513 bits (1321), Expect = e-144, Method: Composition-based stats. Identities = 174/501 (34%), Positives = 266/501 (53%), Gaps = 42/501 (8%) Query: 22 QDRFQRLITTLRQVLECDASALLRYDS----------------------RQFIPLAIDGL 59 + + ++ + ++ D LL + R+ A + Sbjct: 148 DELLEAMLDDVIELTHADKGFLLLLEGAEAAADTAVNGGAPAAPAAGGDRKLAVRASRNI 207 Query: 60 AKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLF 119 K+ + + + +G V L D G ++K+ + + PL Sbjct: 208 RKEAITDAAGGISDSIVRQVIVSGRPVIVSDA--LADTQFGRSDSVIAMKLSSVMCAPLL 265 Query: 120 AGQNLIGALTLDGMQPDQ-FDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATP 178 + +IGAL + + FD + L + A+ A+ L NA+L+ L + Sbjct: 266 SQGQIIGALYVGNDKIKHLFDRAQLDLLSIFASQASLILQNAMLLNALRADKAKL--VAE 323 Query: 179 FEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNP 238 K ++IG P M ++ ++++ VAA+D++VLI+GETGTGKEL+A+ +H SPR P Sbjct: 324 LHDKKFGEIIGACPSMLEVFRKLQKVAATDISVLITGETGTGKELIARELHRRSPRDGGP 383 Query: 239 LVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAK 298 V +NC A+PE++ ESELFGHVKGAFTGAI++R GKF++AD GTLFLDEIGEL L LQ K Sbjct: 384 FVTINCGAIPENLIESELFGHVKGAFTGAIASRPGKFQIADKGTLFLDEIGELPLNLQVK 443 Query: 299 LLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPL 358 LLR LQ + RVGD + +VD+R++AATNR+L EE+ AG FR DL++RL+V L +PPL Sbjct: 444 LLRALQERVVFRVGDSKPEKVDIRIVAATNRNLEEEIRAGNFREDLYYRLNVVNLWLPPL 503 Query: 359 RERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLA 418 RERGDDV+++A + G + S A + ++ Y +PGN+R+LE+ I +A+VL Sbjct: 504 RERGDDVLIIAKVLLSKYADELGSAVRGFSPAALSAIKKYPWPGNIRQLENRIKKALVLC 563 Query: 419 RATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHN 478 D+ +L + P E A +P L +A E FQR + +AL +N+ N Sbjct: 564 ------DQALLAVEDLDL----GPGAETAIMP-----LEKAKEEFQRRYVLEALERNNGN 608 Query: 479 WAACARMLETDVANLHRLAKR 499 AR L D + R ++ Sbjct: 609 RTQTARDLGVDPRTIFRYLEK 629 >UniRef50_A4J616 Two component, sigma54 specific, transcriptional regulator, Fis family n=10 Tax=Bacteria RepID=A4J616_DESRM Length = 454 Score = 513 bits (1321), Expect = e-144, Method: Composition-based stats. Identities = 150/432 (34%), Positives = 236/432 (54%), Gaps = 28/432 (6%) Query: 79 IARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQF 138 I R D ++P+ DGL ++ + + + + I ++ M+ Sbjct: 43 IIRKETPSLVILDLKMPE-MDGLEVLVKAKDLMPKLPIIMITAHGTIDT-AIEAMKLGAT 100 Query: 139 DV----FSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGM 194 D F +EL+++ + AL++ L+ + K Q++G S + Sbjct: 101 DYITKPFDLDELKMV-------IRQALMVNHLQEEVTFLRSEL---NKKYGQIVGNSQAI 150 Query: 195 TQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAES 254 + IE VA S+ VL++GE+GTGKE+ A +IH+ S R P V +NCAALPES+ ES Sbjct: 151 HDVCGLIEKVADSNATVLVTGESGTGKEITALSIHQLSSRRDKPFVPINCAALPESLLES 210 Query: 255 ELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDD 314 ELFGH KGAFTGA++ + G+FE+A+ GTLFLDEI E+ L++Q KLLRVLQ + +RVG Sbjct: 211 ELFGHEKGAFTGAVARKLGRFELANQGTLFLDEITEMPLSMQVKLLRVLQEKEFERVGGT 270 Query: 315 RCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCE 374 +++DVRV+AATNRD E + G FR DLF+RL+V P+ +PPLRER +D+ LLA +F + Sbjct: 271 DSIKIDVRVIAATNRDPMECIRKGTFREDLFYRLNVLPIHLPPLRERTEDIPLLAMHFIK 330 Query: 375 QCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHF 434 + Q +S A LL Y +PGN+REL++ I R+++LA+ ++ H Sbjct: 331 KFNPSQ---EQRMSPEAMGLLISYEWPGNIRELQNVIERSIILAQGNE------IKPHHL 381 Query: 435 AFPEVTLPTPEVAAVPVVKQNLRE---ATEAFQRETIRQALAQNHHNWAACARMLETDVA 491 L + + N + + + ++E I +AL +++ N A++L + Sbjct: 382 PKEIQKLDEVKNETTHGLIINFPDDGISFDEVEKELILKALEKSNGNQTRAAQLLGITRS 441 Query: 492 NLHRLAKRLGLK 503 L A++ LK Sbjct: 442 ALLYRAQKYRLK 453 >UniRef50_C7LX45 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LX45_DESBD Length = 529 Score = 512 bits (1319), Expect = e-143, Method: Composition-based stats. Identities = 159/511 (31%), Positives = 262/511 (51%), Gaps = 10/511 (1%) Query: 2 SFSVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYD--SRQFIPLAIDGL 59 S + VL I+ + + + + + ++ L + + + YD S + GL Sbjct: 7 STELRVLLAISKVIDQALDLESALESILKILSDTMSMRRATVTLYDPLSGRLAISTSYGL 66 Query: 60 AKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLF 119 + R I R P S P D + S + + VG+P+ Sbjct: 67 SALEKQRGVYRMDEGITGIIFRTAKPYVVPDISLEPLFLDKTGTRRISQERISFVGVPIL 126 Query: 120 AGQNLIGALTLDGMQPDQFDVFSD-EELRLIAALAAGALSNALLIEQLESQNMLPGDATP 178 + IG + +D + Q + +D E L ++A L + LS +++ E+ + Sbjct: 127 LHGSPIGVMNVDRVFTGQEQLDADTEFLTVVATLISQFLSLNEKVKKREAALKQENTSLK 186 Query: 179 FEAVKQTQ---MIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRA 235 ++ ++ ++G S M ++++ + VA + VL+ GE+GTGK L+ + IHE S R Sbjct: 187 YQIARENHGPYIVGKSQAMLEVEQYVAKVAITKATVLLLGESGTGKTLIGRIIHELSDRK 246 Query: 236 VNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLAL 295 +P + +NCAA+PE++ E+ELFG+ KGAFTGA S + G+FE A GT+FLDEIGEL L L Sbjct: 247 THPFIKVNCAAIPENLLEAELFGYEKGAFTGANSTKPGRFEDAHLGTIFLDEIGELPLTL 306 Query: 296 QAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSV 355 Q+KLLRVLQ + +R+G ++ +VDVR+++ATNR+L V G FR DL++RL+VFP+ V Sbjct: 307 QSKLLRVLQEREFERIGSNKTRKVDVRIISATNRELEALVGHGLFREDLYYRLNVFPVHV 366 Query: 356 PPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAV 415 P +RER +D+ L +F ++ G S + L+ GA +LL Y +PGNVRELE+ + R V Sbjct: 367 PAVRERKEDIPRLLNHFQKEMEREYGRS-LTLTTGALDLLLAYDWPGNVRELENLVERLV 425 Query: 416 VLARATRSGDEVILE--AQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALA 473 +L E++ P PE A P +++ + + +R + AL Sbjct: 426 ILTDDKPVEAELVRGFLTPETHRPGPARHAPEPPAHPE-QEDYCQPLKETERREVLAALK 484 Query: 474 QNHHNWAACARMLETDVANLHRLAKRLGLKD 504 +N AR L + ++ L++ Sbjct: 485 RNAWIQYKAARELNLTPRQMGYRVRKFNLEE 515 >UniRef50_Q3A356 Two component, sigma54 specific, transcriptional regulator, Fis family n=11 Tax=Desulfuromonadales RepID=Q3A356_PELCD Length = 471 Score = 511 bits (1318), Expect = e-143, Method: Composition-based stats. Identities = 143/378 (37%), Positives = 217/378 (57%), Gaps = 12/378 (3%) Query: 129 TLDGMQPDQFDVFSD----EELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQ 184 ++ M+ FD + E+L++I ++ A+ +L ++N+ + + Sbjct: 102 AVEAMKEGAFDYITKPLHFEKLQVI-------IAKAVEKSRLVAENLYLRQQLRGK-YRF 153 Query: 185 TQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNC 244 +IG S M + +E V +D +LI GE+GTGKELVAKAIH R P V +NC Sbjct: 154 DNIIGNSLPMQYVFSRMEKVLNTDSTILILGESGTGKELVAKAIHYNGHRREKPFVAINC 213 Query: 245 AALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQ 304 A+P + ESELFGHV+GAFTGA+++++GKF+ A GT+FLDEIG + L LQ KLLRVLQ Sbjct: 214 GAIPAELLESELFGHVRGAFTGAVADKTGKFQQAHQGTIFLDEIGTMPLHLQMKLLRVLQ 273 Query: 305 YGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDD 364 ++++VG + +++DVRV++ATN +L EEV GRFRADL++RL+V P+++PPLRER +D Sbjct: 274 EQEVEKVGSSKKIKLDVRVISATNCNLEEEVEQGRFRADLYYRLNVIPIALPPLRERRED 333 Query: 365 VILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSG 424 + LLA YF ++ + ++ GA N L++Y +PGNVRELE+ I R V L + G Sbjct: 334 IALLARYFLQKTCTEMNQPLISITPGAMNCLENYHWPGNVRELENVIERTVTLTDSIAIG 393 Query: 425 DEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACAR 484 + + E P + ++ E +R I+ A+ + A A Sbjct: 394 KSDLPANISGSCCEDEDPQISCPRLTESGMDMPEVIAGIERCLIKSAMGLSGGVKARAAS 453 Query: 485 MLETDVANLHRLAKRLGL 502 +L L KRLG+ Sbjct: 454 LLNIKRTTLVEKIKRLGI 471 >UniRef50_A6EHC4 Sigma-54-dependent transcriptional regulator n=1 Tax=Pedobacter sp. BAL39 RepID=A6EHC4_9SPHI Length = 550 Score = 511 bits (1317), Expect = e-143, Method: Composition-based stats. Identities = 154/456 (33%), Positives = 240/456 (52%), Gaps = 32/456 (7%) Query: 66 RRFALEGHPRLEAIARAGDVVRFPADSEL--PDPYDGLIPGQESLKVHACVGLPLFAGQN 123 +R++L+ EA+ + + F + + PDP + ++ + +G+ +F Sbjct: 104 KRYSLDD-GLCEAMLASAHPIVFEVEEVMQWPDP-PIWLGFWQNKGIREMIGMKIFDRDE 161 Query: 124 LIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQ--------NMLPGD 175 G L + + L I+ + A+SN E++E Q L + Sbjct: 162 CSGFFYLYAKKSNAVSNQYYSLLHSISLQISVAVSNIRANEKIEEQLQQINTYKQQLEDE 221 Query: 176 ATPFEA-----VKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHE 230 + + ++M+G S + Q+ IE VAASD VLI GETGTGKELVA++IH Sbjct: 222 KSYLQEQINTRYHHSEMVGQSSAIRQVFDLIEQVAASDSTVLILGETGTGKELVARSIHN 281 Query: 231 ASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGE 290 SPR ++ +NCAALP ++ ESELFGH KG+FTGA R GKFE+A NGTLFLDEIGE Sbjct: 282 LSPRKDKLMIKVNCAALPANLVESELFGHEKGSFTGASERRIGKFELAHNGTLFLDEIGE 341 Query: 291 LSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSV 350 LS +Q KLLR LQ +I+R+G ++ +VR++AATNR+L +EV G FR+DL++RL+V Sbjct: 342 LSPDIQVKLLRALQEKEIERIGGKGVIKTNVRIIAATNRNLMKEVEEGNFRSDLYYRLNV 401 Query: 351 FPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHA 410 FP+++PPLR R +D+ L+ +F + + G ++ G LQ Y +PGN+RELEH Sbjct: 402 FPITIPPLRNRKEDIQALSAHFIQHLAKKTGRQVKGMTKGVLKTLQEYPWPGNIRELEHL 461 Query: 411 IHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQ 470 I R+++L+R + + + +H + K+ + +R+ I Sbjct: 462 IERSILLSRGNIINEVHLPKVEHM------------EDLTSNKEIRIKTIFENERDHILN 509 Query: 471 ALAQNHHNWA---ACARMLETDVANLHRLAKRLGLK 503 L + A +L L+ K+ +K Sbjct: 510 ILKLCKGKISGNGGAAELLSIPATTLNSKIKKFNIK 545 >UniRef50_Q1D574 Sigma-54 dependent transcriptional regulator, Fis family n=7 Tax=Myxococcales RepID=Q1D574_MYXXD Length = 630 Score = 510 bits (1313), Expect = e-143, Method: Composition-based stats. Identities = 164/483 (33%), Positives = 257/483 (53%), Gaps = 26/483 (5%) Query: 25 FQRLITTLRQ----VLECDASALLRYDSRQFIPLAIDGLAKDVLGRRFALEG--HPRLEA 78 +RL+ L V D L+ ++ ++++ + + + Sbjct: 149 LERLLEGLMDEAIEVTRADKGFLILMENGDPRVKVARNVSRENIEDAVEKDKISDSIIAK 208 Query: 79 IARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQ-PDQ 137 + + + + P+ +L+VH+ + +PL +L G L + + ++ Sbjct: 209 VVKEQKALIVADALDSPEFNKS--ESVVNLRVHSVMCVPLMQKGDLFGVLYVGNDRLVNR 266 Query: 138 FDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQL 197 F+ S + L + AA A+ L NA+L+ L+ N E + ++G GM + Sbjct: 267 FEPKSADMLTIFAAQASLILQNAMLVSDLKLDNTELR--RKLEDQRYGDIVGACQGMRDV 324 Query: 198 KKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELF 257 K I+ +A +D++VLI+GETGTGKEL+A+ IH S RA P + +NC A+PE++ ESELF Sbjct: 325 YKRIDKIAPTDISVLITGETGTGKELIAREIHRRSTRAKGPFITINCGAIPENLLESELF 384 Query: 258 GHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCL 317 GHVKGAFTGA++ ++GKF+ A GTLFLDEIGE+ L LQ KLLR LQ + +VGD+R Sbjct: 385 GHVKGAFTGAVATKAGKFQAAIGGTLFLDEIGEMPLQLQVKLLRALQEKVVYKVGDNRGE 444 Query: 318 RVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCR 377 VD+RV+AATN+ L +EV FR DL++RL+V L +PPLRERG+DV++L +F ++ Sbjct: 445 PVDIRVVAATNKVLEDEVKKNTFREDLYYRLNVVTLKLPPLRERGEDVVVLGRFFLQKYA 504 Query: 378 LRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFP 437 + A ++ Y +PGN+RELE+ + +AVVLA G + + P Sbjct: 505 REFSSKARGFTPSATVSMRKYGWPGNIRELENRLKKAVVLADKPLLGPDDL-----DLKP 559 Query: 438 EVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLA 497 E P L +A E FQ+ I + LA+N+ N A+ L D + R Sbjct: 560 ENLEPI----------MPLLQAKEEFQKRYINEVLARNNGNRTKTAKDLGVDPRTIFRHL 609 Query: 498 KRL 500 ++L Sbjct: 610 EKL 612 >UniRef50_Q06065 Acetoacetate metabolism regulatory protein atoC n=32 Tax=Proteobacteria RepID=ATOC_ECOLI Length = 461 Score = 509 bits (1311), Expect = e-142, Method: Composition-based stats. Identities = 156/423 (36%), Positives = 223/423 (52%), Gaps = 18/423 (4%) Query: 84 DVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDV--- 140 D +P+ DG+ +E + L + ++ ++ FD Sbjct: 48 HPDVVLMDIRMPE-MDGIKALKEMRSHETRTPVILMTAYAEVET-AVEALRCGAFDYVIK 105 Query: 141 -FSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKK 199 F +EL LI A S I L + + ++ SP M + K Sbjct: 106 PFDLDELNLIVQRALQLQSMKKEIRHL--------HQALSTSWQWGHILTNSPAMMDICK 157 Query: 200 EIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGH 259 + +A S +VLISGE+GTGKEL+A+AIH S RA P + +NCAALPES+ ESELFGH Sbjct: 158 DTAKIALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGH 217 Query: 260 VKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRV 319 KGAFTGA + R G FE A+ GTL LDEIGE+ L LQAKLLR+LQ + +R+G + ++V Sbjct: 218 EKGAFTGAQTLRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKV 277 Query: 320 DVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLR 379 D+R++AATNRDL+ V G FR DLF+RL+V L +PPLR+R +D+ LLA +F ++ Sbjct: 278 DIRIIAATNRDLQAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSE 337 Query: 380 QGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEV 439 + + A +LL +S+PGN+REL + I RAVV+ SG + E + Sbjct: 338 NQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVM----NSGPIIFSEDLPPQIRQP 393 Query: 440 TLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKR 499 EV PV ++NL+E + ++ I + L Q N A ML L + Sbjct: 394 VCNAGEVKTAPVGERNLKEEIKRVEKRIIMEVLEQQEGNRTRTALMLGISRRALMYKLQE 453 Query: 500 LGL 502 G+ Sbjct: 454 YGI 456 >UniRef50_Q1DC06 Sigma-54 dependent transcriptional regulator, Fis family n=3 Tax=Proteobacteria RepID=Q1DC06_MYXXD Length = 531 Score = 509 bits (1311), Expect = e-142, Method: Composition-based stats. Identities = 173/495 (34%), Positives = 245/495 (49%), Gaps = 17/495 (3%) Query: 22 QDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDG--LAKDVLGRRFALEGHPRLEAI 79 D +R + L +V+ D + + + + +A G V L P L Sbjct: 29 GDLLRRGLDWLTRVVRFDLATVFLLKEGRLVAVAARGSLANAKVRQHSLPLSEFPSLRQA 88 Query: 80 ARAGDVVRF---PADSELPDPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPD 136 F DP+DG++ H+C+ +PL AG G L+LD + + Sbjct: 89 LETRRAKAFTEEDHAHGDGDPFDGVLDLP---PGHSCMVVPLCAGDRCYGVLSLDRAECE 145 Query: 137 QFDVFSDEELRLIAALAAGALSNALL---IEQLESQNMLPGDATPFEAVKQTQMI---GL 190 + + + + + A A+ +A E+L Q+ + ++ I Sbjct: 146 TYPQPVVDLVEVYGQMLATAIQSAEQRATFERLHRQDHEHAKLLEAQLGGDSEGILETSK 205 Query: 191 SPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPES 250 SP M L + VA +D VLI+GETGTGKE +A+AIH S RA P V LNCAA+P Sbjct: 206 SPVMRDLARRARQVAETDTPVLITGETGTGKERLARAIHRWSARADQPFVTLNCAAIPAG 265 Query: 251 VAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQR 310 + ESELFGHVKGAFTGA +R+G+F+MA GTL LDE+GEL LQAKLLR LQ + Sbjct: 266 LLESELFGHVKGAFTGATKDRAGRFQMAHGGTLLLDEVGELPFDLQAKLLRALQEKTFEP 325 Query: 311 VGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAG 370 VG D+ +R DVR+LAAT+ DL++ + RFR DL++RLSVFPL +PPLRER +D+ L Sbjct: 326 VGSDKTVRADVRILAATHVDLQQAIAQKRFREDLYYRLSVFPLRLPPLRERREDLPQLCA 385 Query: 371 YFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILE 430 + E+ R G + ++ L+ Y +PGN+REL +A+ RA +L R T G E Sbjct: 386 FLLEEQANRTGRRGMRVTPEGLVRLEAYEWPGNLRELANALERATILTRGTELGPESFDV 445 Query: 431 AQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNW---AACARMLE 487 A LP A K+ A QRE I + L A +L Sbjct: 446 PTRGAAVVAALPEEPAPAAGGPKRGPVLTLAAVQREHIMRVLTLTRGRVYGANGAAALLG 505 Query: 488 TDVANLHRLAKRLGL 502 + L K+LG+ Sbjct: 506 LKPSTLQSRMKKLGI 520 >UniRef50_C4XRA9 Transcriptional regulatory protein ZraR n=9 Tax=Proteobacteria RepID=C4XRA9_DESMR Length = 462 Score = 508 bits (1309), Expect = e-142, Method: Composition-based stats. Identities = 154/377 (40%), Positives = 217/377 (57%), Gaps = 9/377 (2%) Query: 129 TLDGMQPDQFDVFS-DEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQTQM 187 + ++ +D + +L ++ AL + L + E+ G V ++ Sbjct: 89 AVSALKSGAYDYLTKPLDLDVMRLTVERALDHLRLARENENLRQKLGP-----GVVGPEI 143 Query: 188 IGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAAL 247 IG SP M +L I +VA ++ VL++GE+GTGKELVAKA+H SPRA P+V +NCAAL Sbjct: 144 IGKSPAMRELFSMIAMVAPTEATVLVTGESGTGKELVAKALHAGSPRAGGPMVAVNCAAL 203 Query: 248 PESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGD 307 E++ ESELFGH KGAFTGA R G+F AD G++FLDEIGE++ ++QAKLLRV+Q + Sbjct: 204 NETLLESELFGHEKGAFTGAERRREGRFMAADKGSIFLDEIGEIAPSIQAKLLRVIQERE 263 Query: 308 IQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVIL 367 IQRVG DR + VDVR+LAATNRDL++EV AGRFR DL++RL+V +SVPPLRERG D+ L Sbjct: 264 IQRVGGDRPVGVDVRILAATNRDLKKEVEAGRFREDLYYRLNVVAISVPPLRERGQDIPL 323 Query: 368 LAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEV 427 LA +F + + + A + L +PGNVRELE+A+ RAV+L+ + Sbjct: 324 LAQHFLTRFAEKNRKRIKGFTPAAMDHLLRCPWPGNVRELENAVERAVILSVGEYVTERE 383 Query: 428 IL---EAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACAR 484 + + A + A + +RE I L N + AR Sbjct: 384 LPLSAMREAGGNGAPGGAGGGAPAPGDMAGLAGMALDDVEREVILATLRDTGGNKSEAAR 443 Query: 485 MLETDVANLHRLAKRLG 501 +L A LH+ K+ G Sbjct: 444 VLGITRATLHKKLKKYG 460 >UniRef50_B8FLD5 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FLD5_DESAA Length = 1035 Score = 506 bits (1304), Expect = e-142, Method: Composition-based stats. Identities = 157/514 (30%), Positives = 258/514 (50%), Gaps = 37/514 (7%) Query: 5 VDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDS-----RQFIPLAIDGL 59 + + + EL + + + QR+I+T +V + A+ + + A L Sbjct: 541 LREILELGQELVKIRDYHELVQRIISTGNRVTGAERGAIFMSEKGNSGKEELRLKASRNL 600 Query: 60 AKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLF 119 D + + +E +A +G + +S + Y + + + +PL Sbjct: 601 TSDHVANPSFVSSMKMIEMVAASGRGLIAGVESTDTEGYS------SEGAIQSKICVPLC 654 Query: 120 AGQNLIGALTLD-GMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQN-MLPGDAT 177 ++G L D + F + L +ALAA AL NA +Q+ N L + Sbjct: 655 LHDQVVGVLYHDNRLLASAFREEDLDVLSYFSALAAIALDNARAYDQIRRWNIKLSREKQ 714 Query: 178 PFEA-----VKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEAS 232 +E ++ +++G SP + ++ +IE VA ++ VLI+GETG GKELVA+AI + S Sbjct: 715 YYEEAHLSYLQFDEIVGHSPAINEVLSKIEQVANTETTVLITGETGVGKELVARAIQKHS 774 Query: 233 PRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELS 292 RA P + + +ALP+ + SEL GH KGAFTGA ++G+ E+AD GTLFLDEIG++S Sbjct: 775 SRAQQPFIGVQLSALPKDLMASELLGHEKGAFTGATHRQAGRLELADGGTLFLDEIGDIS 834 Query: 293 LALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFP 352 +Q +LLRVLQ +RVG + L D R++AATNR+L V GRFRADL++RL+VFP Sbjct: 835 HDIQIRLLRVLQTRQFERVGGMKTLSSDFRLIAATNRELESLVRDGRFRADLYYRLNVFP 894 Query: 353 LSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIH 412 + VPPLR+R +D+ LLA +F + + + +S ++L+ Y +PGNVREL++ + Sbjct: 895 IYVPPLRDRREDIPLLAMHFLKLHAAKLNKQVMRISDREMDMLKEYDWPGNVRELKNVVE 954 Query: 413 RAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQAL 472 R V+L+ + +P + P + +R I + L Sbjct: 955 RGVILSTN----------------RDFRMPELQSGDCPPLTVGDTATLAENERSHILRIL 998 Query: 473 AQNHHNW---AACARMLETDVANLHRLAKRLGLK 503 + + A++L+ + L +LG+K Sbjct: 999 KRTGWKVAGASGAAKILDIPPSTLSFRMNKLGIK 1032 >UniRef50_B0VES5 Putative uncharacterized protein n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VES5_9BACT Length = 1454 Score = 506 bits (1304), Expect = e-142, Method: Composition-based stats. Identities = 161/504 (31%), Positives = 259/504 (51%), Gaps = 29/504 (5%) Query: 5 VDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLAKDVL 64 ++ I L ++ +++L ++ D LL + + P A + + Sbjct: 969 LNQFYEITQNLNTITDLDVLIEQSLSSLVEIANADGGMLLLHPNPSL-PDAW----EYRI 1023 Query: 65 GRRFALEG--HPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFAGQ 122 F+ E H + + I +V + + P + + + LPL + Sbjct: 1024 YHNFSPEDKYHDQFQNIC--YEVYQNNKLENIKQP-------HFAPSYNNILALPLSIRK 1074 Query: 123 NLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAV 182 N +G + L ++ FS+ + L++AL+ + ++IE + S N+ E + Sbjct: 1075 NTMGVVLLFCKSGSKY--FSERIINLLSALSNQII---VIIENILSANLEKSHNIIREQL 1129 Query: 183 K----QTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNP 238 + +IG SP M ++ + IE V + VL+ G +GTGKEL+A+A+H +S R Sbjct: 1130 SSNNIYSNIIGKSPEMMKIFEIIEKVKDTPTTVLLEGPSGTGKELIARALHYSSNRRNKA 1189 Query: 239 LVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAK 298 V C ALPE++ ESELFGHVKG+FTGA ++ G FE+AD GT FLDEI ++S + Q+K Sbjct: 1190 FVAQYCGALPETLLESELFGHVKGSFTGAAYDKKGLFEIADGGTFFLDEISDISQSTQSK 1249 Query: 299 LLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPL 358 LLR LQ G+I+RVG + +VDVRV+ ATN L E V +G FR DL++RL+V + VPPL Sbjct: 1250 LLRFLQEGEIKRVGATKTEKVDVRVVCATNTPLMERVKSGEFRLDLYYRLNVIRIDVPPL 1309 Query: 359 RERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLA 418 + R D+ LLA +F ++ R + + +A A +L+ Y +PGNVR+LE+ I RAV LA Sbjct: 1310 KNRTGDIPLLAIHFLDKYNKRMNKNVMGFTAEAMKVLEQYDWPGNVRQLENEIERAVTLA 1369 Query: 419 RATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHN 478 + + E + + A+ K+NL++A E +R+ I Q+L + N Sbjct: 1370 EPNTFIKPSDFSEEVYRHIEYS----KTIAMLSGKKNLKDAIEELERKLISQSLEKFQWN 1425 Query: 479 WAACARMLETDVANLHRLAKRLGL 502 A+ L L + +R L Sbjct: 1426 QTQAAKELGLSRQGLIKKMQRYNL 1449 >UniRef50_A7HFP7 Transcriptional regulator, NifA subfamily, Fis Family n=2 Tax=Myxococcaceae RepID=A7HFP7_ANADF Length = 674 Score = 505 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 185/522 (35%), Positives = 260/522 (49%), Gaps = 37/522 (7%) Query: 5 VDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDS-----RQFIPLAIDGL 59 + +L ++ L + ++ FQ L ++LR+V +C L D+ RQ I DG Sbjct: 162 LRLLLDVNELLVAHLDLREMFQALASSLRRVTDCHFIGLALPDAATGELRQHIVDHPDGK 221 Query: 60 AKDVLGRRFALEGHPRLEAIARAGDVVRFP---ADSELPDPYDGLIPGQESLK------V 110 G L G R G V A+ + PD Y G G + V Sbjct: 222 GAITEGMVLPLHGSAS-GKAFRTGAPVLLNDPEANRQDPDLY-GTPEGARFYRTVLEEGV 279 Query: 111 HACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLI------- 163 + LPL ++G L L +F E + +A + A++NAL Sbjct: 280 PSGYVLPLVHRGEVLGVLQLKKYADARFKEREIEFMSKVAGQLSIAVANALEYREVKESK 339 Query: 164 EQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKEL 223 E+L+ + + + A ++IG+S + Q+ +I+ VA +D VLI GETGTGKEL Sbjct: 340 ERLDRERVYLKEEIR-SAHDFEEIIGVSRTLKQVLGQIDTVAVTDSTVLILGETGTGKEL 398 Query: 224 VAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTL 283 +A+AIH S R P V +NC+A+P + ESELFGH +GAFTGA + R G+FE AD GTL Sbjct: 399 IARAIHNRSRRRDRPFVKVNCSAIPTGLLESELFGHERGAFTGATAPRIGRFEAADQGTL 458 Query: 284 FLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRAD 343 FLDEIG+L + LQ KLLRVLQ + +R+G R RVDVRV+AATNR L V GRFR D Sbjct: 459 FLDEIGDLPVDLQPKLLRVLQEREFERLGASRTRRVDVRVVAATNRGLATMVGEGRFRED 518 Query: 344 LFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGN 403 L++RL+VFP+++PPLRER D+ LL +F R G + + L Y +PGN Sbjct: 519 LYYRLNVFPITLPPLRERAGDIPLLVRHFVGVYARRMGKQIDHIPDASMRALVGYHWPGN 578 Query: 404 VRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAF 463 VREL++ I RAV+L +LE AA P + L+E Sbjct: 579 VRELQNVIERAVILTPGA------VLELALAERAAGAREDRPDAAAPNGHRTLQE----V 628 Query: 464 QRETIRQALAQNHHNWA---ACARMLETDVANLHRLAKRLGL 502 +RE I AL + A L +L ++LG+ Sbjct: 629 EREHILGALQEAKWVIGGPNGAAARLGLRRTSLMYRMEKLGI 670 >UniRef50_A6EHB3 Sigma-54-dependent transcriptional regulator n=1 Tax=Pedobacter sp. BAL39 RepID=A6EHB3_9SPHI Length = 664 Score = 505 bits (1301), Expect = e-141, Method: Composition-based stats. Identities = 162/438 (36%), Positives = 230/438 (52%), Gaps = 21/438 (4%) Query: 70 LEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGL-PLFAGQNLIGAL 128 + H + + AG V PA P + + ++ H V + + L Sbjct: 237 IAEHAVFDNVISAGVPVIIPARDMRSVP----VLSEWLVEAHDDVVVGTAMYQDTALLGL 292 Query: 129 TLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLES-QNMLPGDATPFEAVKQTQM 187 ++ + E + IAA AL+N ++L + P A ++ Sbjct: 293 LYLRLKNKEQSAPLLELIGAIAAQLTLALNNLRYRQELAAGTAFFPLTAQDRLEYAFPEI 352 Query: 188 IGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAAL 247 +G SP M ++ + VA S VLI GETG GKEL+A AIH+AS RA +V +NCAA+ Sbjct: 353 VGGSPQMQEVFNLMGQVAPSTATVLILGETGVGKELIAGAIHQASDRAERQMVRINCAAI 412 Query: 248 PESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGD 307 P ++ ESELFGH KG+FTGA R+GKFE+AD T+FLDEIGELSL LQ KLLRVLQ + Sbjct: 413 PANLIESELFGHEKGSFTGATDRRTGKFELADQSTIFLDEIGELSLDLQVKLLRVLQEKE 472 Query: 308 IQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVIL 367 +R+G + VDVRV+AATNR+L +EV AGRFR DL++RL+VFP+S+P LR+R D+ L Sbjct: 473 FERIGGSGTISVDVRVIAATNRNLLDEVEAGRFRMDLYYRLNVFPISLPSLRDRRADIPL 532 Query: 368 LAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEV 427 LA +F E+ +++ G S + + Y +PGN+RELEH I R V+L T D Sbjct: 533 LANFFLERYKMKSGKKISGFSQKVMSAMMKYRWPGNIRELEHLIERQVILTEGTLIRDLD 592 Query: 428 ILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWA---ACAR 484 I A +V A Q + +R+ I L + + A+ Sbjct: 593 IPAAH------------QVMATDGSGQTEIKTIAQNERDHIFSVLRLCNGKISGKNGAAK 640 Query: 485 MLETDVANLHRLAKRLGL 502 +L L+ K+LGL Sbjct: 641 LLGVPATTLNSKIKKLGL 658 >UniRef50_Q2LUG8 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=6 Tax=Bacteria RepID=Q2LUG8_SYNAS Length = 456 Score = 504 bits (1299), Expect = e-141, Method: Composition-based stats. Identities = 167/456 (36%), Positives = 239/456 (52%), Gaps = 20/456 (4%) Query: 57 DGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPA---------DSELPDPYDGLIPGQES 107 DG ++ + R F L+ +E A + V+ A D ++P DG+ QE Sbjct: 11 DGQSQREMLRDFLLKEGHTVEEAASGEEAVQSIAGGAFDLVLLDYKMP-GMDGMQVLQEV 69 Query: 108 LKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLE 167 +++ + + I +D M+ D + L ++ L Sbjct: 70 KRLNPETDVVIITAYGTIET-AVDAMKAGAVDYITKPLEFDELLLLLDRVA---ERRTLI 125 Query: 168 SQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKA 227 +N + + V +I S M L VA+S VL+ GE+GTGKEL+A+ Sbjct: 126 RENEILRRQLKDQGVTTDAIIFTSQKMAALTSMAARVASSRATVLLQGESGTGKELLARL 185 Query: 228 IHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDE 287 IH+ SPR+ P++ +NC ALPES+ ESELFGH KGAFTGA S R G+FE AD GTLFLDE Sbjct: 186 IHQLSPRSTRPIITVNCGALPESLIESELFGHEKGAFTGATSRRIGRFEEADGGTLFLDE 245 Query: 288 IGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHR 347 IGEL++ +Q KLLR LQ + QRVG + +R DVR+++ATNRDL V +FR DL++R Sbjct: 246 IGELTMPVQVKLLRFLQEREFQRVGGNTNIRADVRIISATNRDLETMVKEEKFREDLYYR 305 Query: 348 LSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVREL 407 L+V +S+PPLRER +D+ L +F E+ G +S+ AR+LL Y +PGNVREL Sbjct: 306 LNVVVMSIPPLRERREDIPALIDHFLERFAAENGKKISGISSEARDLLMKYDYPGNVREL 365 Query: 408 EHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRET 467 E+ I RAVV+AR I+ + F E TL + LR A E +++ Sbjct: 366 ENIIERAVVIARNE------IIYMEDLPFREDTLVATSGGVPEEGEGRLRGAIENLEKQM 419 Query: 468 IRQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 I+ A+ + + A ML L K+ GLK Sbjct: 420 IQDAMEKAGDHQTRAAEMLGLSERMLRYKLKKYGLK 455 >UniRef50_Q1D5E1 Sigma-54 dependent transcriptional regulator, Fis family n=4 Tax=Myxococcales RepID=Q1D5E1_MYXXD Length = 529 Score = 504 bits (1299), Expect = e-141, Method: Composition-based stats. Identities = 167/487 (34%), Positives = 237/487 (48%), Gaps = 14/487 (2%) Query: 25 FQRLITTLRQVLECDASALLRYD--SRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARA 82 Q L+ + L+ D L D R+ A +V R L G +A+A Sbjct: 48 LQTLMDRIAITLQADRGTLWLLDPARRELFSRAAH--LPEVSQIRVKL-GQGVAGTVAKA 104 Query: 83 GDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFAG-QNLIGALT-LDGMQPDQFDV 140 G + P + I + + + +PL G L G L L+ D+F Sbjct: 105 GHAINVPDPRGEQRFF-ADIDRMTGYRTTSLLAVPLRDGDGALYGVLQVLNRRGEDRFTD 163 Query: 141 FSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKE 200 + L IA+ + AL + L ++L+ P ++IG SP + + + Sbjct: 164 EDTQRLTAIASQVSTALQSTSLYQELQRAKEQPQVPV---GYFFNRIIGESPQLQAIYRL 220 Query: 201 IEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHV 260 + A +D VL+ GE+G+GKEL A+A+H PR P + ++CAALP ++ E+ELFGH Sbjct: 221 VRKAAPTDATVLLRGESGSGKELFARAVHVNGPRRDQPFIKVDCAALPATLIENELFGHE 280 Query: 261 KGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVD 320 +GAFTGA GKFE A GT+F+DEIGEL L +Q KLLRV+Q + +RVG + ++VD Sbjct: 281 RGAFTGADHRVPGKFEAASGGTVFIDEIGELPLPVQGKLLRVIQDREFERVGGTQAVKVD 340 Query: 321 VRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERG-DDVILLAGYFCEQCRLR 379 VR++AAT+RDL V GRFR DL++R+ V + +PPLRERG +D+ LA +F R Sbjct: 341 VRIVAATHRDLARMVAEGRFREDLYYRIKVVEVVLPPLRERGAEDIERLARHFVAAVARR 400 Query: 380 QGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEV 439 L+ LSA A L+ Y +PGNVRELE+ I AVVL + + L A Sbjct: 401 HRLTPPRLSAAAVERLKRYRWPGNVRELENCIESAVVLCEGEILEEHLPLPDVDRAALPP 460 Query: 440 TLPTPEVAA--VPVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLA 497 V A P +R I + L N A AR+L L R Sbjct: 461 PAAAQGVNAPTAPAPLDAGLLPLAEVERRHILRVLDAVKGNRTAAARVLAIGRNTLARKL 520 Query: 498 KRLGLKD 504 K GL D Sbjct: 521 KEYGLGD 527 >UniRef50_Q2LRW3 Response regulator containing sigma 54 interaction domain n=3 Tax=Bacteria RepID=Q2LRW3_SYNAS Length = 457 Score = 504 bits (1299), Expect = e-141, Method: Composition-based stats. Identities = 154/426 (36%), Positives = 230/426 (53%), Gaps = 12/426 (2%) Query: 78 AIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQ 137 + D LP DG+ + +H + + + +G I ++ + Sbjct: 40 RLLDEDLPGIVLLDIWLP-GIDGMEVLKTIKSLHPKLPVVMMSGHGTIET----AVKATK 94 Query: 138 FDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQL 197 F E L L +AL + +LE +N+L + ++ G SP + +L Sbjct: 95 LGAFDFIEKPLSLEKIILTLKHALDLSRLEEENVLLKQKIN----RDYELTGKSPPIIEL 150 Query: 198 KKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELF 257 + I IVA ++ +LI GE GTGKELVA+AIH S RA P+V +NCAA+PE + ESELF Sbjct: 151 MEMISIVAPTNAWILIMGENGTGKELVARAIHRQSKRADKPMVEVNCAAIPEELIESELF 210 Query: 258 GHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCL 317 GH KGAFTGA + GKF++A GT+FLDE+ ++SL QAK+LR+LQ +RVG ++ + Sbjct: 211 GHEKGAFTGATEKKRGKFDIAHEGTIFLDEVADMSLKAQAKILRILQEKKFERVGGNKVI 270 Query: 318 RVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCR 377 ++DVRVLAATN+DL +E+ GRFR DLF+RL+V PL VPPLR R +D+ LLA F Sbjct: 271 QLDVRVLAATNKDLEKEMEEGRFRQDLFYRLNVIPLKVPPLRSRKEDIPLLAERFLSDFA 330 Query: 378 LRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFP 437 L++G + A LL +S+PGNVREL++ I R ++ + I Sbjct: 331 LKEGEPGKTIQDDALALLMEHSWPGNVRELKNFIERLAIMTTSNVITVHDIPPLPRDGHK 390 Query: 438 EVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLA 497 P ++ + REA F+++ I + L + N + A + + +NLH+ Sbjct: 391 VEPFREP---GFELLAGSFREAKMDFEKQYISRKLREFDGNISKTAESIGLERSNLHKKI 447 Query: 498 KRLGLK 503 K GL+ Sbjct: 448 KAYGLE 453 >UniRef50_D0LFQ8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LFQ8_HALO1 Length = 515 Score = 504 bits (1299), Expect = e-141, Method: Composition-based stats. Identities = 161/447 (36%), Positives = 232/447 (51%), Gaps = 29/447 (6%) Query: 79 IARAGDVVRFPADSELPD--PYDGLIPGQESLKVHACVGLPLFAG-QNLIGALTLDGMQP 135 I R +V D +P + L+ E + L + L+ A+ L + Sbjct: 44 ILRDNEVAVIVTDQRMPRMTGLELLLKAAEIQPDAVGIILTAYTDLDVLVDAINLGQIYR 103 Query: 136 DQFDVFSDEELRLIAALA----AGALSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLS 191 + +ELR I A A N L+ QL A +IG S Sbjct: 104 YVTKPWEAKELRGILTHALERYALLRENQRLMAQLREYTGYLNQEI-HGAFDFGNIIGDS 162 Query: 192 PGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESV 251 + ++ ++E VA ++ VL+ GETGTGKELVA AIH S R P V +NCAAL V Sbjct: 163 AALGEVLSKVEQVAPTNSTVLLRGETGTGKELVAHAIHINSSRENQPFVRVNCAALAPGV 222 Query: 252 AESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRV 311 ESELFGH KGAFTGA++ R G+FE+AD GTLFLDE G+L + +Q KLLR LQ + +RV Sbjct: 223 LESELFGHEKGAFTGAVAQRPGRFELADGGTLFLDECGDLPMEVQIKLLRALQEREFERV 282 Query: 312 GDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGY 371 G + ++VDVRV++ATNRDL + AG FR DL++RL+VFP+ +PPLR+R +D+ L + Sbjct: 283 GGTQTIKVDVRVISATNRDLEAMIEAGSFREDLYYRLNVFPIHLPPLRDRLEDLPALVAH 342 Query: 372 FCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEA 431 F + + A + L+ Y++PGNVRELE+ I RA++LAR L+A Sbjct: 343 FIAKFARSGMTRTPGVRGAALDKLRSYTWPGNVRELENIIERAMILARGRE------LDA 396 Query: 432 QHFAFPEVTLPTPEVAAVPVV---------------KQNLREATEAFQRETIRQALAQNH 476 H F V+ P V + L E +R I A+ +++ Sbjct: 397 DHLDFGRRAQNATPVSGTPSVISETASHSPPLIGDESKPLAERLLDSERREIIAAVEKSN 456 Query: 477 HNWAACARMLETDVANLHRLAKRLGLK 503 +N A+ ARML + + L+ ++ GL+ Sbjct: 457 NNIASAARMLGINRSTLYYRMRKHGLE 483 >UniRef50_D1TMK5 Transcriptional regulator NifA n=1 Tax=Burkholderia sp. CCGE1002 RepID=D1TMK5_9BURK Length = 548 Score = 504 bits (1298), Expect = e-141, Method: Composition-based stats. Identities = 158/492 (32%), Positives = 230/492 (46%), Gaps = 38/492 (7%) Query: 47 DSRQFIPLAIDGLAKD-VLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQ 105 + L GL+ G RF G + I + V P P D + Sbjct: 56 PDGKLGGLCSTGLSDGWREGMRFP-SGEGIVGRIQESESAVVVPELDGDPMFDDRTGAVR 114 Query: 106 ESLKVH-ACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIE 164 S A +G P+ +G L PD VF+D+ L+L+ +A+ LL Sbjct: 115 VSNAERVALLGAPIRHEGRPLGVLVALCENPDGKRVFADD-LQLLEVVASPIARALLLDR 173 Query: 165 QLESQNMLPGDATPFEAVKQTQM------IGLSPGMTQLKKEIEIVAASDLNVLISGETG 218 + + + + IG S M + ++ VA + VL+ GE+G Sbjct: 174 EADPSRKSVQEEISRRRNAAAPIYQVDWAIGRSASMQHVFAQVHQVAPARTTVLLRGESG 233 Query: 219 TGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMA 278 TGKEL+A+AI+ SPR P V +NCAAL E++ ESELFGH KGAFTGA + R G+FE+A Sbjct: 234 TGKELIARAIYRLSPRKDQPFVSVNCAALTETLLESELFGHEKGAFTGAQTQRKGRFELA 293 Query: 279 DNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAG 338 GTLFLDEIG++S + QAKLLRVLQ + +RVG +RVDVR++ ATNR+L + V G Sbjct: 294 HGGTLFLDEIGDISPSFQAKLLRVLQEREFERVGGTTPVRVDVRLIVATNRNLEQMVREG 353 Query: 339 RFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHY 398 FRADL++R++V + +PPLRER +D+ +A YF + G + + + A +L Sbjct: 354 EFRADLYYRINVVSIVLPPLRERREDIPEMAQYFLNRFNRENGRA-LHFNEEALRVLSSC 412 Query: 399 SFPGNVRELEHAIHRAVVLARATRSGDEVIL---------EAQHFAFPEVTLPT------ 443 +PGNVRELE+ I R +A G L H + P Sbjct: 413 YWPGNVRELENCIERTATMAHHDTIGRSSFLCEIDQCLTKVLHHLEREDAVRPARPSDVT 472 Query: 444 -------PEVAAVP-----VVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVA 491 P P + + E +RE + A+ + A AR+L Sbjct: 473 VSNALNVPAKFGAPERDAGGLGMHSGEHIPEDERERLLWAMERCGWVQAKAARLLGITAR 532 Query: 492 NLHRLAKRLGLK 503 + ++ G+K Sbjct: 533 QIGYALRKHGIK 544 >UniRef50_C6W352 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Dyadobacter fermentans DSM 18053 RepID=C6W352_DYAFD Length = 693 Score = 503 bits (1297), Expect = e-141, Method: Composition-based stats. Identities = 165/439 (37%), Positives = 233/439 (53%), Gaps = 28/439 (6%) Query: 71 EGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTL 130 E H +L + + V D L L +E + L G+ +G + + Sbjct: 268 EEHVKL--VFESSQPVLLDIDENLEAKCLKLSIQRELSGFNRVYASALRLGEQKLGMVWM 325 Query: 131 DGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQ-LESQNMLPGDATPFEAV---KQTQ 186 G D S L+ I A + A+SN L EQ L Q L + + + Sbjct: 326 LG------DQVSGPILQGICAQISTAVSNVLANEQILRLQKQLEDENHYLKQQLNKDFEE 379 Query: 187 MIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAA 246 ++G M Q+ + I +VA S+ VL+ GETGTGKEL+AKA+H S R ++ +NCAA Sbjct: 380 IVGGGEAMQQVYRLISLVAESNATVLLLGETGTGKELIAKAVHHTSARKDKLMIKVNCAA 439 Query: 247 LPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYG 306 +P S+ ESELFGH +GAFTGA+ R GKFE+A+N TLFLDE+GE+ + Q KLLRVLQ Sbjct: 440 MPASLIESELFGHERGAFTGAVERRIGKFELANNSTLFLDEVGEMPMETQVKLLRVLQEK 499 Query: 307 DIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVI 366 +++RVG ++++VR++AATNRDL EV AGRFR+DL++RL+VFP+++PPLR+R +D+ Sbjct: 500 EMERVGGKTTIKLNVRIIAATNRDLEAEVKAGRFRSDLYYRLNVFPINLPPLRDRREDIE 559 Query: 367 LLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDE 426 LAG+F + G V LSA A LQ Y +PGNVRELEH I R+V+LA Sbjct: 560 SLAGFFLAKFSKSIGKKTVKLSANALRQLQAYLWPGNVRELEHLIERSVILAT------- 612 Query: 427 VILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWA---ACA 483 E LP A E +R I Q L + + A Sbjct: 613 ------DPMIREFFLPQATGATTDEHTMQSDLTLEQVERMHIIQVLRRCGGKISGIGGAA 666 Query: 484 RMLETDVANLHRLAKRLGL 502 +L +H ++LG+ Sbjct: 667 EILGIPGNTIHSKMRKLGI 685 >UniRef50_C9RIK1 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RIK1_FIBSS Length = 509 Score = 503 bits (1296), Expect = e-141, Method: Composition-based stats. Identities = 172/506 (33%), Positives = 269/506 (53%), Gaps = 22/506 (4%) Query: 5 VDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSR--QFIPLAIDGLAKD 62 +++L I+ L + + + ++ T+ V+ + + L Y+ + +GL+ Sbjct: 11 LELLYKISSILNQSLDFETVAHPVLQTVESVMGVEHATLTLYNRHTGEISIEIAEGLSSR 70 Query: 63 VLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFAGQ 122 + G + G + P+ ++ PD D G+ K A + +P+ Q Sbjct: 71 QASKGRYKVGEGITGRVVETGKPIIIPSVAKDPDFLDRTGRGKTEDK--AFLCVPIIMEQ 128 Query: 123 NLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEA- 181 ++GAL+ D PD+ ++ ++++ L+ +A + L Q +N + A Sbjct: 129 EVVGALSADEHNPDEANL--NDQIHLLEIIAQMLATAVKLRRQAREENEILKAENERMAM 186 Query: 182 -----VKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAV 236 + +IG +P M Q+ +I+ VA S L LI GE GTGK LVA+AIH S R + Sbjct: 187 ELKARFQPDNIIGKTPEMQQVYTQIDQVAKSPLPALIVGEVGTGKGLVAEAIHFRSDRNL 246 Query: 237 NPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQ 296 P V ++CAALPESV + ELFG KGA G ++ G+ E A+ GTLFLDE+ EL+ LQ Sbjct: 247 GPFVRVHCAALPESVLDRELFGSEKGALVGVVNEAPGRVEQAEGGTLFLDEVAELTPNLQ 306 Query: 297 AKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVP 356 KLLR+LQ G+++RVG +V+VRV+ AT ++L++ V G FR DL+++L + P+ VP Sbjct: 307 IKLLRLLQQGEMERVGARFPKKVNVRVICATTKNLQQMVSDGTFREDLYYQLHIVPIYVP 366 Query: 357 PLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVV 416 PLR+R D++LLA YF + G + L+ G +L Y +PGNVRELE+AI RAV+ Sbjct: 367 PLRKRRTDIVLLADYFVDHYCRLVGKNVRRLARGTIEMLMSYPWPGNVRELENAIERAVL 426 Query: 417 LARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNH 476 L +E ++ HF T+ T E + PV NL+ EA++R+ I AL + Sbjct: 427 LT------EEDVIYPHHFP---PTIQTDETSGTPV-SGNLKLMVEAYERDIICDALKSSK 476 Query: 477 HNWAACARMLETDVANLHRLAKRLGL 502 AA AR L T L K+LG+ Sbjct: 477 GKMAAAARSLSTTPRILTYKIKQLGI 502 >UniRef50_C8WZC4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8WZC4_DESRD Length = 448 Score = 503 bits (1295), Expect = e-141, Method: Composition-based stats. Identities = 163/466 (34%), Positives = 233/466 (50%), Gaps = 32/466 (6%) Query: 43 LLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLI 102 LL D + + L K+ A +G L + G + D +LPD GL Sbjct: 8 LLIDDEPNTLKVLSAFLTKEGYEVGTAKDGRSGLNHLQEGGWDMLI-TDLKLPD-ITGLD 65 Query: 103 PGQESLKVHACVGLPLFAGQNLIGALT--LDGMQPDQFDVF----SDEELRLIAALAAGA 156 ++ + + + G+++ + M+ F+ +EL L+ Sbjct: 66 ILEQVKATWPKLPVVMI---TAYGSISNAVQAMKLGAFNYLTKPVDPDELLLL------- 115 Query: 157 LSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGE 216 + N QL +N + M+G S M +L IE VA + NVL++GE Sbjct: 116 VQNVFERSQLLEENQTMRRQLR-DRYSLGNMVGKSKAMQELFNLIEKVAQYEANVLVTGE 174 Query: 217 TGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFE 276 TGTGKELVA+ IH A P V ++CAA+PE++ ESELFGH +GAFTGA + G+ E Sbjct: 175 TGTGKELVARGIHYAGQEENLPFVPIDCAAVPETLLESELFGHSRGAFTGAAEQKKGQIE 234 Query: 277 MADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVL 336 +A GTLFLDEIGEL LALQ K LR LQ +I R+G+ R +VDVR++AATNRDL E+ Sbjct: 235 LAHGGTLFLDEIGELPLALQKKFLRFLQEKEIVRLGETRRRKVDVRIIAATNRDLEAEIA 294 Query: 337 AGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQ 396 AG++R DLF+RL+V + +PPLRER DD+ L +F + + G + ++ + Sbjct: 295 AGQWREDLFYRLNVISIEIPPLRERRDDIPPLVNHFLAKYNAQNGKAIQGMTGEVMEVFM 354 Query: 397 HYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNL 456 Y +PGNVRELE+ I RAVVL GD + + E + P P V ++ Sbjct: 355 AYDWPGNVRELENVIERAVVLC----MGDSIAMSCLPPKLQERSAPAPSTDGVNLM---- 406 Query: 457 REATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 ++ I Q L + N +A AR L L K GL Sbjct: 407 -----EMEKRLIVQTLEKTEQNQSAAARELGISRKQLRTKMKHHGL 447 >UniRef50_A9EN62 Sigma-54 dependent transcriptional regulator n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9EN62_SORC5 Length = 648 Score = 502 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 169/500 (33%), Positives = 247/500 (49%), Gaps = 25/500 (5%) Query: 22 QDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLAKDVLGRRFALEG--HPRLEAI 79 + + + ++ + P A VL R + G P + Sbjct: 155 DEVLAEIADAVLALVPSSTHVTVVLRDDDQEPGAAPAAFVPVLTRVRSASGKGGPPAGPV 214 Query: 80 ARAGDVVR-----FPADSELPDPYD-GLIPGQESLKVHACVGLPLFAGQNLIGALTLDGM 133 V R A P + G + + + +PL+ G+ +IG L D Sbjct: 215 PITRSVYRKVIKERAAVLAADAPIEVGQSESLMGASIRSTLAVPLWKGEEIIGVLQADNR 274 Query: 134 Q-PDQFDVFSDEELRLIAALAAGALSNALLI-------EQLESQNMLPGDATPFEAVKQT 185 P + E L ++AA A+ A++NA LI E+L+ +N Sbjct: 275 SVPGMLNAGDLETLLVLAANASLAVANARLIKRLVLAEERLQKENSFLKGREERRRGGGG 334 Query: 186 ---QMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYL 242 +IG S M ++ +++ V + + VLI GETGTGKEL+A A+H S R V Sbjct: 335 GAVDIIGNSDAMRKVIGQLDKVVDTRVTVLIEGETGTGKELIAAAVHYRSRRRDKLFVAQ 394 Query: 243 NCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRV 302 NCAAL ES+ ESELFGH KG+FTGA + G FE+AD GTLFLDEI E L+LQ+KLLR Sbjct: 395 NCAALAESLLESELFGHKKGSFTGATEEKKGLFEIADGGTLFLDEITETPLSLQSKLLRA 454 Query: 303 LQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERG 362 LQ G+I+ VG V+VR++AATNR+L +EV GRFR DL++RL VFP+ +PPLRER Sbjct: 455 LQEGEIRPVGATSPKHVNVRIVAATNRNLEDEVAKGRFREDLYYRLKVFPIRLPPLRERR 514 Query: 363 DDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATR 422 DD+ LLA +F E+ G S A L+ Y +PGNVREL++ + R V+ Sbjct: 515 DDISLLAAHFLERYADEIGKPCGGFSQQAMELMVAYDWPGNVRELQNEVQRIVIQLEPGA 574 Query: 423 SGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAAC 482 G +L P + VA K +L+E +A ++ + +AL +++N Sbjct: 575 FGTPELLS------PRIRQVEGLVARAGTPKGSLKEMMDAVEKFFLLEALRGHNNNKTNA 628 Query: 483 ARMLETDVANLHRLAKRLGL 502 A+ L LH+ ++ G+ Sbjct: 629 AKSLGITREGLHKKLRQYGI 648 >UniRef50_D2QLL9 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QLL9_9SPHI Length = 875 Score = 502 bits (1293), Expect = e-140, Method: Composition-based stats. Identities = 153/408 (37%), Positives = 225/408 (55%), Gaps = 21/408 (5%) Query: 105 QESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIE 164 E+L + + + +P+F+ I AL L F L+ I+ A AL N E Sbjct: 471 AEALGLKSSMYVPIFSKGKPIAALILASKAAYAFTPKDLCTLQDISVELALALENLSAYE 530 Query: 165 Q-------LESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGET 217 + LE + + + ++IG S M + I VA +D VLI GET Sbjct: 531 RIKVLSEHLEQEKTYLAEEIK-TSHNFEEIIGTSSSMQTVFNAIGQVAPTDYTVLIMGET 589 Query: 218 GTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEM 277 GTGKEL+A+A+H S R P+V +NCAALP + ESELFGH +G+FTGA R GKFE+ Sbjct: 590 GTGKELIARAVHSLSARRDRPVVKINCAALPAQLIESELFGHERGSFTGATEKRIGKFEL 649 Query: 278 ADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLA 337 A+ GTLFLDEIGEL L LQAKLLR +Q +I+RVG + ++ R++AATNR+L++EV A Sbjct: 650 ANGGTLFLDEIGELPLELQAKLLRAIQEKEIERVGGKGVILINTRIIAATNRNLQQEVAA 709 Query: 338 GRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQH 397 GRFR+DL++RL+VFP+ VPPLRER +D++ L +F ++ + G ++ + L Sbjct: 710 GRFRSDLYYRLNVFPIVVPPLRERQEDILPLTMHFLQKISKKLGKPITNIANASLQQLLQ 769 Query: 398 YSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLR 457 Y +PGN+RELEH + R+ +L+++ L A AFP + + E Sbjct: 770 YPWPGNIRELEHVLERSSILSQSATLTLAEPLRAATTAFPPFVVQSSEEV---------- 819 Query: 458 EATEAFQRETIRQALAQNHHNW---AACARMLETDVANLHRLAKRLGL 502 ++ + R I ALA++ + A +L L K+L + Sbjct: 820 KSIDDAMRLAILAALAKSGNRIRGTGGAAELLNIKPTTLEARMKKLNI 867 >UniRef50_A4CKT3 Transcriptional regulator, NifA subfamily, Fis Family protein n=1 Tax=Robiginitalea biformata HTCC2501 RepID=A4CKT3_9FLAO Length = 791 Score = 502 bits (1293), Expect = e-140, Method: Composition-based stats. Identities = 164/516 (31%), Positives = 263/516 (50%), Gaps = 50/516 (9%) Query: 22 QDRFQRLITTLRQVLECDASALLRYDSRQFIPLA----IDGLAKDVLGRRFALEGHPRLE 77 Q+ F+R+ Q LE + ++ ++ + L I+ + G R P Sbjct: 289 QETFRRITKLAAQTLELERVSIWKFTNSGNEILCEALYIENEGQHRRGDRLTRADCPNYF 348 Query: 78 AIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQ 137 + V P E P D + + + + + +++ G L + + P Sbjct: 349 KLLEQQKSVLVPNAQEDPATADFGPGYLKPNGIKSLMDVFVYSAHQPYGILCFEHVGPG- 407 Query: 138 FDVFSDEELRLIAALA---------------AGALSNALL------------IEQLESQN 170 ++ E+L +++A + A L +LE +N Sbjct: 408 IRSWTAEDLEFASSMANVVSLMVESNERKKAEEQIRQANLELSKANKELDTLRNRLEQEN 467 Query: 171 MLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHE 230 M + A +M+ S ++Q+ E+E VAA++ VL+ GE+GTGKEL+A+AIH Sbjct: 468 MYLRNELDL-AFNYQEMVYSSQAISQVLTEVEQVAATNATVLLQGESGTGKELLARAIHN 526 Query: 231 ASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGE 290 SPR+ P++ +NCAA+P + ESELFGH KGAFTGA+SN+ GKFE+AD GTLFLDEIGE Sbjct: 527 ISPRSGKPMIKVNCAAIPGELLESELFGHKKGAFTGAVSNKVGKFELADGGTLFLDEIGE 586 Query: 291 LSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSV 350 L L +Q KLLR LQ G+I+ VG ++DVR++AATNR L+EEV G FR DL+ R++V Sbjct: 587 LPLEMQPKLLRFLQEGEIEVVGGTEVRKLDVRIIAATNRYLKEEVEKGDFREDLYFRINV 646 Query: 351 FPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHA 410 FP+ VPPLRER +D+ +L +F ++ + G + ++ A + L+ Y +PGN+RELE+ Sbjct: 647 FPIEVPPLRERKEDIPILVEHFMDKFNRKYGKNISFVTEEAMSQLKQYEWPGNIRELENL 706 Query: 411 IHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQ 470 + RA +++R G+ +I+ + + +P+ NL + QR I Sbjct: 707 LERATIVSR----GETLIIPGFE--------SQSQKSKMPLRNNNL--SLTTVQRNHILH 752 Query: 471 ALAQNHHNWA---ACARMLETDVANLHRLAKRLGLK 503 L A +L+ + L ++LG++ Sbjct: 753 VLDMCDWKITGQGGAAELLDMRPSTLRDRMQKLGIE 788 >UniRef50_C1ZJW6 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains n=2 Tax=Planctomyces RepID=C1ZJW6_PLALI Length = 662 Score = 502 bits (1293), Expect = e-140, Method: Composition-based stats. Identities = 169/499 (33%), Positives = 261/499 (52%), Gaps = 15/499 (3%) Query: 5 VDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLAKDVL 64 + + +A +L + R+ ++L+CD +++ +D +A L + Sbjct: 168 LREILKLAAQLANEQQTEKLLTRIAEEATRLLDCDRASIFIWDREHHEVIACPALGVEGG 227 Query: 65 GRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLF-AGQN 123 R + + + + ++R P + + K + PL Sbjct: 228 SLRLS-DKVGVVGEVIAKVQLIRVDDAYADPR-FHRKVDASSGYKTSNLLCGPLRDLDGK 285 Query: 124 LIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVK 183 ++GA + + F + L + A AL N E L + N + + Sbjct: 286 VLGAFEVINHRQGPFSQEDEITLLDLCIQIAAALQNTRERELLVTSNRQLTEQV----SR 341 Query: 184 QTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLN 243 ++G SP + ++ I +A +DL VLI GE+GTGKE+VA ++H RA P + +N Sbjct: 342 GVNIVGESPAIVAMRSTIRRLAGTDLPVLILGESGTGKEVVASSLHYQGSRADRPFIAVN 401 Query: 244 CAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVL 303 CAAL E++ ESELFGH +G+FT A R GKFE+A+ GT+FLDEIG+LS QAKLLRVL Sbjct: 402 CAALTETLLESELFGHERGSFTDAHEMRRGKFELAEGGTIFLDEIGDLSAGGQAKLLRVL 461 Query: 304 QYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGD 363 + I RVG + + ++ RV+AATN L E V A +FR DL+ RL+V L +PPLRER D Sbjct: 462 EQKVITRVGGSQTIPINARVIAATNARLAEAVRAKKFREDLYFRLNVVTLEIPPLRERAD 521 Query: 364 DVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRS 423 DV+ LA YF EQ ++ ++ LSA AR LQ +++PGNVREL + + R LA A R Sbjct: 522 DVLPLAEYFLEQFAVQARRGKMHLSAEARRRLQSHAWPGNVRELRNLMERVAFLAPAER- 580 Query: 424 GDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACA 483 +E + AF + P + P + L EAT +FQ+E IR+A+ + +N + A Sbjct: 581 -----IEVEDLAF--ILSPERDSFHEPSLDMGLSEATNSFQQEYIRRAIKRVRNNMSEAA 633 Query: 484 RMLETDVANLHRLAKRLGL 502 R+L +NL+R ++L + Sbjct: 634 RLLGLHRSNLYRKMRQLDM 652 >UniRef50_Q2RXL4 Transcriptional regulator, NifA subfamily, Fis family n=6 Tax=Proteobacteria RepID=Q2RXL4_RHORT Length = 733 Score = 501 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 153/424 (36%), Positives = 231/424 (54%), Gaps = 35/424 (8%) Query: 114 VGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNAL-------LIEQL 166 G+PL + +++G LTL + D+F ++ L +A+ A+ NAL L +QL Sbjct: 301 CGIPLLSAGHVLGVLTLASRERDKFTDYNIGLLGEVASRICIAVENALAYGEISRLKDQL 360 Query: 167 ESQNMLPGDATPF------EAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTG 220 +N + +IG+SP + + +++E+VA SD VLI GETGTG Sbjct: 361 SRENKQLAKERYYLEEEIRRTEDFGDIIGISPAIRGVLEQVELVADSDSTVLILGETGTG 420 Query: 221 KELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADN 280 KEL+A+AIH S R ++ +NCAA+P ++ ES+LFGH KGAFTGAI+ +SG+FE+AD Sbjct: 421 KELIARAIHMLSQRKKRTMIKVNCAAIPSALLESDLFGHEKGAFTGAIAQKSGRFELADR 480 Query: 281 GTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRF 340 GTLFLDE+G++ + LQ KLLR LQ +I+RVG + + VDVR++AATNRDL V F Sbjct: 481 GTLFLDEVGDIPIDLQPKLLRALQEREIERVGGHQPIPVDVRMIAATNRDLTGMVEKRLF 540 Query: 341 RADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSF 400 R DL++RL+VFP+ +PPLRER +D+ L+A YF + + + SA ++L + + Sbjct: 541 RGDLYYRLNVFPILIPPLRERREDIPLMADYFMRKTARKMNRAIEAFSAETMDMLLNLPW 600 Query: 401 PGNVRELEHAIHRAVVLARATR------------------SGDEVILEAQHFAFPE-VTL 441 PGNVREL++ I RAV+L + ++ ++ + P + Sbjct: 601 PGNVRELQNVIERAVILTKGPVLHLPATELRHHLAPSAALPSEDAVIPLRAAVLPSAASA 660 Query: 442 PTPEVAAVPVVKQNLREATEAFQRETIRQALAQNH---HNWAACARMLETDVANLHRLAK 498 P P A EA +R+ I + L + + A L L + Sbjct: 661 PDPLPPPAGSSPNPGDLAGEAIERDQILRVLRETNGIVGGPRGAAAHLGMKRTTLLSRMR 720 Query: 499 RLGL 502 RLG+ Sbjct: 721 RLGI 724 >UniRef50_B4U9N2 Transcriptional regulator, NifA subfamily, Fis Family n=5 Tax=Aquificaceae RepID=B4U9N2_HYDS0 Length = 502 Score = 501 bits (1291), Expect = e-140, Method: Composition-based stats. Identities = 135/402 (33%), Positives = 221/402 (54%), Gaps = 21/402 (5%) Query: 106 ESLKVHACVGLPLFAGQNLIGALTL--DGMQPDQFDVFSDEELRLIAALAAGALSNALLI 163 + +K A +G+P+ + IG L D + ++ D L + A + +L Sbjct: 112 DKIKNEAFIGVPIRSEDRTIGVFCLFKDLNKHEELTRIVDIMLVVSAMIGMSYKLFGILQ 171 Query: 164 EQ---LESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTG 220 E+ E Q L + +G S + LK I+ +A +D VL+ GE+G G Sbjct: 172 EEKASWEEQRQLLAKEF-SDTFSIEGFVGKSEAIITLKDTIQKIAMTDSTVLLLGESGVG 230 Query: 221 KELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADN 280 K L+AKAIH S R P + +NCAA+PE++ E+ELFG+ KGAFTGA+ ++ GKFE+A+ Sbjct: 231 KTLIAKAIHTLSERKDKPFISVNCAAIPETLLEAELFGYEKGAFTGAVHSKKGKFELANG 290 Query: 281 GTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRF 340 GT+FLDEIGEL L Q+KLLRV+Q +++++G ++ + V+VRV+A+TN+DL V G F Sbjct: 291 GTIFLDEIGELPLQSQSKLLRVIQEKELEKLGAEKSIFVNVRVIASTNKDLASMVARGEF 350 Query: 341 RADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSF 400 R DL++RL+V P+ VP LRER +D+ LL +F ++ + A L +Y++ Sbjct: 351 REDLYYRLNVIPIRVPALRERKEDIPLLVKHFLDKFNKHYKKHIN-IEKEAMEALVNYNW 409 Query: 401 PGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREAT 460 PGN+RELE+ I R VV+ + ++V+L ++ ++ Sbjct: 410 PGNIRELENLIERLVVINNKDITKEDVLL--------------ATKINSNKLQTDIPSII 455 Query: 461 EAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 E+ ++E I++AL + + + A++L + L K+ + Sbjct: 456 ESTEKEAIKKALEKCGYVKSKAAKILGLTLRQLDYRIKKYNI 497 >UniRef50_Q2LSK2 Sigma-54 dependent transcriptional regulator n=4 Tax=Bacteria RepID=Q2LSK2_SYNAS Length = 472 Score = 501 bits (1290), Expect = e-140, Method: Composition-based stats. Identities = 138/374 (36%), Positives = 206/374 (55%), Gaps = 6/374 (1%) Query: 129 TLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQTQMI 188 ++ M+ FD S + L ++ AL L+ +N+ D E +M+ Sbjct: 101 AVEAMKLGAFDYISK---PMRNDLVTLTVNRALSYASLQEENVTLRDHLR-EQYDFGKML 156 Query: 189 GLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALP 248 G S M + IE VA SD V+I GE+GTGKELVA+AIH S R PL+ +NC A+P Sbjct: 157 GYSECMKTIFDTIEKVAKSDSTVIIYGESGTGKELVARAIHFNSNRNNFPLIPVNCGAIP 216 Query: 249 ESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDI 308 E + ESELFGH KGAFTGAI NR G+FE+A G++FLDEIG++S ALQ K+LRV+Q Sbjct: 217 EDLLESELFGHEKGAFTGAIRNRLGRFELAQGGSIFLDEIGDMSPALQVKVLRVIQEKQF 276 Query: 309 QRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILL 368 +R+G + + DVR++AAT+++L V RFR DLF+R++V P+ +P LRERG D+ +L Sbjct: 277 ERIGGVKTINADVRIIAATHQNLELAVTEKRFREDLFYRINVIPIHLPALRERGADIAIL 336 Query: 369 AGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVI 428 A +F ++ + + A + HY +PGNVRELE+ I VV+ E + Sbjct: 337 ANHFLQKFAQSKKKEVTRFTPEAIACMLHYPWPGNVRELENLIEMLVVMKEDGEIKLEDL 396 Query: 429 LEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLET 488 E + + +P + + F++ + +ALA+ + A++L Sbjct: 397 PSKIRQFKKET--QSFKEYQIPEEGIDFNDVVYQFEKNILLKALAKTNGVKNRAAKLLNL 454 Query: 489 DVANLHRLAKRLGL 502 + L KRL + Sbjct: 455 NRTTLVEKLKRLNI 468 >UniRef50_Q1D6H5 Sigma-54 dependent DNA-binding response regulator n=7 Tax=Myxococcales RepID=Q1D6H5_MYXXD Length = 474 Score = 501 bits (1290), Expect = e-140, Method: Composition-based stats. Identities = 146/388 (37%), Positives = 215/388 (55%), Gaps = 25/388 (6%) Query: 129 TLDGMQPDQFDV----FSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQ 184 +D ++ FD F EL + A AA N + + + Sbjct: 88 AVDAIKAGAFDYITKPFDQAELSSVVAKAAKT-------------NESARRSVRPDVKAR 134 Query: 185 TQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNC 244 +IG S + ++ K I+ VA + VLI+GE+GTGKEL+A A+H AS R P + +NC Sbjct: 135 AAIIGDSSTIQEVYKIIDKVADTPSTVLITGESGTGKELIATALHGASSRRDKPFIKINC 194 Query: 245 AALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQ 304 AA+P ++ ESELFG+ +GAFTGA++++ G+FE+AD GTLFLDEIGE+ + +Q KLLR +Q Sbjct: 195 AAIPHTLLESELFGYERGAFTGAVTSKPGRFELADEGTLFLDEIGEIPVEMQVKLLRAIQ 254 Query: 305 YGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDD 364 G+ +RVG + RVDVR++AATNRDL+ E+ AGRFR DL++RL+V P+S+P LRER D Sbjct: 255 EGEFERVGGIKTTRVDVRLVAATNRDLQAEIEAGRFRKDLYYRLAVVPISLPALRERRSD 314 Query: 365 VILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSG 424 V +LA +F E+ R ++ A LLQ Y++PGN+RELE+ I R ++ A Sbjct: 315 VPMLARHFVEKYNRRLNKKIEGIADDAMALLQGYAWPGNIRELENLIERVLLFADGPLIT 374 Query: 425 DEVILEAQHFAFPEVTLPTPEVA----AVPVVKQNLREAT----EAFQRETIRQALAQNH 476 + E A VP + L++ +R+ I + L + Sbjct: 375 ARDLPEPVRQGTGVQAGANLASAVASIDVPTGEVGLKDIVRMKAAELERDLIVKKLEETG 434 Query: 477 HNWAACARMLETDVANLHRLAKRLGLKD 504 N AR+L+ +L K GL+D Sbjct: 435 GNVTRAARLLQISRKSLQTKMKEFGLRD 462 >UniRef50_A0KL56 Formate hydrogenlyase transcriptional activator n=5 Tax=Gammaproteobacteria RepID=A0KL56_AERHH Length = 709 Score = 501 bits (1290), Expect = e-140, Method: Composition-based stats. Identities = 157/408 (38%), Positives = 228/408 (55%), Gaps = 22/408 (5%) Query: 112 ACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLE---- 167 +C+ LPL NL+G L L Q D F L +AA A A++N +++ Sbjct: 298 SCI-LPLRYRGNLLGVLILSHPQADFFADLDISLLEQVAARTAIAMNNVQAQQEISNTTG 356 Query: 168 SQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKA 227 ++ P +I S M ++ +++++VA SD VLI GETGTGKEL+A+A Sbjct: 357 AREKTLRVDGPAPQGDFANIIYQSAVMEKVLEKVKLVAQSDCTVLILGETGTGKELIAQA 416 Query: 228 IHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDE 287 IH S R + +V +NCAA+P + ES+LFGH KGAFTGA++ R G+FE A GTLFLDE Sbjct: 417 IHALSARHDHEMVKVNCAAIPTGLIESDLFGHEKGAFTGALTQRIGRFERAHKGTLFLDE 476 Query: 288 IGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHR 347 +G++ L LQ KLLRVLQ +++RVG+ + +DVR++AATN DL V RFR+DL++R Sbjct: 477 VGDMPLDLQPKLLRVLQEHELERVGNSNPIAIDVRLVAATNCDLLSMVKNKRFRSDLYYR 536 Query: 348 LSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVREL 407 L+VFP+ +PPLRER +D+ LL +F ++ R + + A A +L + GN+REL Sbjct: 537 LNVFPIELPPLRERREDIPLLVNFFIKKIAKRMRRTITSIPADAMKMLVSLPWYGNIREL 596 Query: 408 EHAIHRAVVLARA---TRSGDEVI-------LEAQHFAFPEVTLPTPEVAAVPVVKQNLR 457 E+ I RAVV+ R S DE++ +E + P L + A+P Sbjct: 597 ENIIERAVVMTRGHVLNLSPDELLPLKGFHKIETLVYDEPARELFREPLPALPQGD---- 652 Query: 458 EATEAFQRETIRQALAQNHHNWA---ACARMLETDVANLHRLAKRLGL 502 EA +R +I +AL + A A+ L L KRLG+ Sbjct: 653 EAQGEDERVSIIRALKACNGIVAGERGAAQRLGMKRTTLLSKMKRLGI 700 >UniRef50_B4DAQ1 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DAQ1_9BACT Length = 987 Score = 500 bits (1289), Expect = e-140, Method: Composition-based stats. Identities = 141/349 (40%), Positives = 207/349 (59%), Gaps = 12/349 (3%) Query: 165 QLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELV 224 +LE+QN + + +++G SP + Q+ ++++ VA++D VLI GETGTGKEL+ Sbjct: 635 RLEAQNTYLQEEIRSQH-NFVEIVGNSPSLLQVLRQVDRVASTDSTVLICGETGTGKELI 693 Query: 225 AKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLF 284 A+AIH+ SPR PLV +NC A+ + ESELFGHVKGAFTGAI+NR G+FE+AD GT+F Sbjct: 694 ARAIHDRSPRRERPLVKVNCGAISTGLVESELFGHVKGAFTGAIANREGRFELADGGTIF 753 Query: 285 LDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADL 344 LDE+GEL Q KLLRVLQ + + +G + ++VDVRV+AATNRDL V G+FR+DL Sbjct: 754 LDEVGELPPETQVKLLRVLQEQEFEPIGSTKTVKVDVRVIAATNRDLETMVREGKFRSDL 813 Query: 345 FHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNV 404 F+RL+V PL++PPLR+R +D+ LL +F E+ + G S ++ L Y +PGN+ Sbjct: 814 FYRLNVVPLTMPPLRQRANDIPLLTMFFLEKFARKLGKSLGQIAEETMARLCQYPWPGNI 873 Query: 405 RELEHAIHRAVVLA--------RATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNL 456 REL++ I RAVVL+ + G ++ PE + + Sbjct: 874 RELQNVIERAVVLSTGSLLTVEKGALPGATGVMAQGPGWTPERAMIDAAEPLSTPLGATS 933 Query: 457 REATEAFQRETIRQALAQNHHNW---AACARMLETDVANLHRLAKRLGL 502 A E +R+ I L Q + A++L + L ++LG+ Sbjct: 934 GNALEDVERQHIASVLQQTNWRIEGANGAAKILNLQPSTLRSRMQKLGI 982 Score = 41.6 bits (97), Expect = 0.065, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 60/187 (32%), Gaps = 5/187 (2%) Query: 6 DVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLAKDVLG 65 + L NI + + F L L+ + D + + I I K++ Sbjct: 312 EALLNITRAIGHHLQRDVLFGALAECLQTAVPTDCFGIALPVAGARIQAHILN-QKNIRS 370 Query: 66 RRFALEGHPRLEA----IARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFAG 121 H + + + + E+ + + + ++ + LPL AG Sbjct: 371 EGAPPTLHEAKGSAAEWVMKNREWYVAATRREVSERFPKTSEMMQREQMESACVLPLVAG 430 Query: 122 QNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEA 181 + GAL + + + +A+ A AL + L+ E++ Sbjct: 431 DRVRGALFFLAAGKESYAALQHAFMNQVASAVAVALDDCLVQEEMRRLGEELAAQKIARL 490 Query: 182 VKQTQMI 188 +Q + + Sbjct: 491 EQQKEEV 497 >UniRef50_C8WE21 Transcriptional regulator, NifA, Fis Family n=4 Tax=Alphaproteobacteria RepID=C8WE21_ZYMMN Length = 568 Score = 500 bits (1289), Expect = e-140, Method: Composition-based stats. Identities = 177/540 (32%), Positives = 263/540 (48%), Gaps = 48/540 (8%) Query: 8 LANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLAKDVLGRR 67 L I+ L + +R+I+ L ++ D + + +D Q + + G D G + Sbjct: 27 LYEISKILCAPMETVTLIKRVISVLESFIDLDHAIIAFFDEDQEAEILV-GAKSDQQGAK 85 Query: 68 FALEGHPR--LEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHAC-VGLPLFAGQNL 124 + P + I V S+ P + + +C +G+P+ + Sbjct: 86 IYFDSIPEQIVGQIVTGKMPVIIRDISKDP-YFSNSRSHIWHINQKSCVIGVPILDRDKV 144 Query: 125 IGALTLDGMQP--DQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAV 182 G L +D P ++ + D + RL++ +AA A L + + ++ + A Sbjct: 145 SGILLIDRPTPRNEREALAPDRDARLLSMVAALLGQTARLHQMIRREHEFLLRQSSHTAP 204 Query: 183 KQTQ------MIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAV 236 +Q + +IG SP + + ++I ++A +++ VL+ GE+GTGKEL A+AIH+ASPR Sbjct: 205 QQAEDMPHPRIIGDSPIIRSILEKINLIAKNNVTVLLRGESGTGKELFAQAIHQASPRKG 264 Query: 237 NPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQ 296 P + LNCAALPESV ESELFGH KGAFTGA R G+FE+AD GTLFLDEIGE+S Q Sbjct: 265 LPFIKLNCAALPESVLESELFGHEKGAFTGAAQMRKGRFELADGGTLFLDEIGEISPNFQ 324 Query: 297 AKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVP 356 AKLLRVLQ G+ +RVG + L+V+VRV+AATN +L E V G FRADL++RLSV P+ +P Sbjct: 325 AKLLRVLQEGEFERVGGTKTLKVNVRVIAATNVNLEEAVSRGNFRADLYYRLSVIPIFLP 384 Query: 357 PLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVV 416 PLRE D+ LLA F L + + + A ++L H FPGN+RELE+ I R Sbjct: 385 PLREHPSDIPLLAKEFLRHFNLE-NKTHLTIDQNALDVLSHCYFPGNIRELENCIRRTAT 443 Query: 417 LARATRS--------------------------------GDEVILEAQHFAFPEVTLPTP 444 LAR T G E + A Sbjct: 444 LARNTEITAEDFTCYNDNCLSSIFWHREEEKTPHVCKNHGSEGEISECPSAQHCQAASNA 503 Query: 445 EVAAVPVVKQNLREATEAF--QRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 E + + F Q+E + A+ Q A AR+L + ++ G+ Sbjct: 504 ESDKTDLAFPKEKTTQSEFRSQKEQLIDAMEQAGWVQAKAARILGMTPRQIGYALRKNGI 563 >UniRef50_Q3ABV5 Sigma-54 dependent transcriptional regulator n=3 Tax=Bacteria RepID=Q3ABV5_CARHZ Length = 732 Score = 500 bits (1288), Expect = e-140, Method: Composition-based stats. Identities = 140/401 (34%), Positives = 223/401 (55%), Gaps = 21/401 (5%) Query: 116 LPLFAGQNLIGALTL-------DGMQPDQFDVFSDEE--LRLIAALAAGALSNALLIEQL 166 LPL + + L D + S E + + LA + L+++ Sbjct: 339 LPLPTEEEIREILAYTDKFTPEDELNCGACGYNSCREKAIAVYQGLAEIDMCLPFLLKKT 398 Query: 167 ESQNMLPGDATPFEAVKQ---TQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKEL 223 + + E K+ + G + + ++KK IE A SD NVLI GE+G GKE+ Sbjct: 399 RGEAEFYRNKYEMENRKKYYLDGITGQTEKIIEVKKLIEKAAMSDGNVLIQGESGVGKEI 458 Query: 224 VAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISN-RSGKFEMADNGT 282 A+ IH S RA P V +NCAA+PE++ ESELFG+ +GAFTGA ++GK E AD GT Sbjct: 459 AARTIHYLSERADKPFVAINCAAIPENLLESELFGYEEGAFTGAKRGGKAGKIEQADGGT 518 Query: 283 LFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRA 342 LFLDEIG++ L++Q KLLR +Q + +R+G + +VD+R++AATN+ L + V GRFR Sbjct: 519 LFLDEIGDMPLSMQVKLLRFIQNREFERIGSNTPRKVDIRIIAATNQPLAKLVKEGRFRM 578 Query: 343 DLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPG 402 DL++RL+VF +++PPLRER DD+ LL F + R+ ++ ++++ A N+L +YS+PG Sbjct: 579 DLYYRLNVFNINIPPLRERRDDIPLLVNRFMNEFCERRKMAPKIVTSEAMNILMNYSWPG 638 Query: 403 NVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEA 462 N+REL++ I RA LA +++ +H + + +EA Sbjct: 639 NIRELQNVIERAYYLAEGN------LIKPEHLPAQLTSKALSGERITKIT--TFKEAVAE 690 Query: 463 FQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 +++ I + L ++N ACA++L A L++ K G++ Sbjct: 691 VEKKLIIEGLKATNYNKLACAKLLGIPRATLYQKIKEYGIE 731 >UniRef50_Q311G4 DNA-binding protein Fis / transcriptional regulator, Fis family n=10 Tax=Desulfovibrionales RepID=Q311G4_DESDG Length = 576 Score = 499 bits (1287), Expect = e-140, Method: Composition-based stats. Identities = 165/530 (31%), Positives = 262/530 (49%), Gaps = 49/530 (9%) Query: 10 NIAIELQRGIGHQDRFQRLITTLRQVL---------ECDASALLR--YDSRQFIPLAIDG 58 A+ + + R Q + TL++++ + +LLR ++ F + Sbjct: 45 QSALIMNQINTQDSRLQPYLGTLQRIVSDMGPQRPFQSSLKSLLRTLAENHHFKRPHLVI 104 Query: 59 LAKDVLGRRFALEGHPR-------------LEAIARAGDVVRFPADSELPDPYD-GLIPG 104 + + +L P + +G V P + P + Sbjct: 105 FDPETQTLKLSLTHDPTKAQDVEYSPGVGVTGQVFSSGQPVIVPRMKDHPSFLNKAFGRS 164 Query: 105 QESLKVHACVGLPLFAGQN------LIGALTLDGMQPDQFDVF-SDEELRLIAALAAGAL 157 +E L + +P+ +IG L++D D + L+++A + A Sbjct: 165 EEELATLGFICVPVLGPGEEASPREVIGTLSVDTPITDLPSLEGQCRFLQVVAGMIAN-- 222 Query: 158 SNALLIEQLESQNM-----LPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVL 212 A L E++ Q L G V+ ++ S M + ++ V S L Sbjct: 223 QAAYLQEEMARQKHMMTQGLIGGDVAENTVQAANIVAASKSMRLVLNQVAQVGPSRATAL 282 Query: 213 ISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRS 272 + GE+GTGKEL+A+AIH+ASPR PL+ LNCAALP + ESELFG+ KGAFTGA+ N+ Sbjct: 283 LRGESGTGKELLAEAIHQASPRRDMPLIKLNCAALPSDLVESELFGYQKGAFTGAVQNKK 342 Query: 273 GKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLR 332 G FE+A GTLFLDEIGELS + QAK+LR +Q +IQR+G ++ + VDVR++ AT++ L Sbjct: 343 GLFELAHKGTLFLDEIGELSASAQAKVLRAIQEQEIQRLGSEQTISVDVRLICATHQHLE 402 Query: 333 EEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGAR 392 E V +G FR DL++R++VFP+ +PPLRER +D++ +A +F ++ S +S A Sbjct: 403 ELVESGSFREDLYYRINVFPVFIPPLRERREDILPVAEHFLKEYAEEYQKSIKRISTPAI 462 Query: 393 NLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVV 452 +LL Y +PGN+REL++ I RAV++ DE ++ H +L T E A Sbjct: 463 DLLTQYHWPGNIRELKNCIERAVLVC------DEQVIRTYHMP---PSLQTAESTATDS- 512 Query: 453 KQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 + EA F++E + AL + N AR L ++ K+ G+ Sbjct: 513 SLSFCEAVAKFEQELLVDALKKARGNMLQAARDLRVSYRIVNYKVKKYGI 562 >UniRef50_B3DZ60 DNA-binding response regulator, NtrC family (Contains REC, AAA-type ATPase, and DNA-binding Fis domains) n=4 Tax=Verrucomicrobia RepID=B3DZ60_METI4 Length = 464 Score = 499 bits (1286), Expect = e-140, Method: Composition-based stats. Identities = 157/419 (37%), Positives = 216/419 (51%), Gaps = 12/419 (2%) Query: 89 PADSELPDPYDGLIPGQESLK-VHACVGLPLFAGQNLIGAL--TLDGMQPDQFDVFSDEE 145 P D L D G G E L+ V + P G++ ++ ++ +D Sbjct: 50 PIDIVLADIRLGKESGFEILRKVKSLPFPPACLFMTAYGSVENAVEAIKMGAYDYIPK-- 107 Query: 146 LRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVA 205 L L ++E +N+ ++ ++IG S M + ++I+ VA Sbjct: 108 -PLDLEKLEITLKRIYQSRKVEVENLQLKRQLNWK-YGLEKIIGNSAAMKAVFEKIKQVA 165 Query: 206 ASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFT 265 +S VL+ GE+GTGKELVA AIH+ SPR P V ++CAAL + ESELFGH KGAFT Sbjct: 166 SSKATVLLEGESGTGKELVAHAIHQLSPRKNFPFVVVHCAALSPQLLESELFGHEKGAFT 225 Query: 266 GAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLA 325 GAI R G+FE A GTLFLDEIGE+ L Q KLLR L IQRVG ++ + VDVRV+A Sbjct: 226 GAIERRIGRFEEAARGTLFLDEIGEIDLPTQVKLLRALGEKTIQRVGSNKVVAVDVRVIA 285 Query: 326 ATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRV 385 ATN++L + V G+FR DLF RL+V + +PPLRER +D+ LLA F + G Sbjct: 286 ATNKNLEKMVEEGKFREDLFFRLNVVRIVMPPLRERKEDIPLLAQAFLAEFAAENGKKID 345 Query: 386 VLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPE 445 LS A +L Y +PGNVREL+ AI VVL + + E P ++ P Sbjct: 346 RLSPEAMKILLEYDWPGNVRELKMAIEHGVVLCQGEEIRPRDLPERIRIPRPLLSAPISV 405 Query: 446 VAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLKD 504 ++ P NL+EA ++ I AL + A+ L L R K+ L D Sbjct: 406 ESSEPD-CFNLKEA----EKRLILHALRVCQGKKTSAAKKLGISRKTLQRKIKQFELTD 459 >UniRef50_Q1INE5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Acidobacteria RepID=Q1INE5_ACIBL Length = 459 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 144/373 (38%), Positives = 213/373 (57%), Gaps = 15/373 (4%) Query: 129 TLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQTQMI 188 + ++ +D + L A +S AL ++ E +N+ + E ++ Sbjct: 92 AVATLRNGAYDYITK---PLDPEETAHLVSKALAHKRTEQENVRLKEQ--IEEHAHVDLV 146 Query: 189 GLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALP 248 S M ++ IE VA +D VLI+GE+GTGKE+VA+AIH S R +P+V ++C AL Sbjct: 147 WRSDAMKKINDAIETVAPTDATVLITGESGTGKEVVARAIHALSTRRFHPMVPVHCGALT 206 Query: 249 ESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDI 308 E++ ESELFGH KGAFTGA + GKFE+A+ GT+FLDEIG++SL Q LLRVLQ +I Sbjct: 207 ETLLESELFGHEKGAFTGAQYRKKGKFEVAEGGTVFLDEIGDISLKTQTDLLRVLQEREI 266 Query: 309 QRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILL 368 RVG ++ ++VD R++AATN+DL + + G FR DLF+RL+VF + +PPLR+R +D+ LL Sbjct: 267 VRVGGNQPIKVDFRIVAATNKDLEKLIEEGHFRPDLFYRLNVFRIELPPLRDRREDIPLL 326 Query: 369 AGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVI 428 +F ++ + +++ A N+LQ Y +PGNVRELE+A+ RA+V+A+ E Sbjct: 327 VNHFTKKFAEQMNKRVTRVASPAMNMLQQYPWPGNVRELENAVERAMVVAQ------EPE 380 Query: 429 LEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLET 488 L F T + L E ++E I L + + N A ML+ Sbjct: 381 LRETDFVLKVKAAATMSSTNGTGTPKTL----EDIEKEHILHVLDETNWNQTRAAEMLDI 436 Query: 489 DVANLHRLAKRLG 501 D LH KR G Sbjct: 437 DRVTLHHKIKRYG 449 >UniRef50_B5YL21 Acetoacetate metabolism regulatory protein AtoC n=3 Tax=Bacteria RepID=B5YL21_THEYD Length = 446 Score = 498 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 132/374 (35%), Positives = 203/374 (54%), Gaps = 24/374 (6%) Query: 129 TLDGMQPDQFDVF-SDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQTQM 187 ++ M+ + + L+ + A+ + I++LE ++ Sbjct: 88 AVEAMKLGAYHYLIKPVDTELLLNVIKEAIEKSKGIQKLEK-----------IETPFPEI 136 Query: 188 IGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAAL 247 IG S + ++ +++VA S+ NVLI+GE+GTGKELVA+AIH+ S R P + ++C + Sbjct: 137 IGKSKTIQEIFYIMQMVAESNANVLITGESGTGKELVARAIHKNSLRKSKPFIIVDCTTI 196 Query: 248 PESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGD 307 PE++ ESELFGH KGAFTGA ++G E+A+ GT+FLDEIGEL + LQ KLLR LQ + Sbjct: 197 PENLLESELFGHEKGAFTGATERKTGLIELANEGTVFLDEIGELPMLLQKKLLRFLQEKE 256 Query: 308 IQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVIL 367 IQR+G + ++VDVRV++ATN+DL + + G FR DL+ RL+V +++PPLRER +D+ L Sbjct: 257 IQRIGSTQRIKVDVRVISATNKDLEKAIKEGSFREDLYWRLNVVRINLPPLRERKEDIPL 316 Query: 368 LAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEV 427 L +F + L N L +Y +PGN+REL + I RAVVL+ + Sbjct: 317 LVNHFLNKFSKENNKPIPQLEPEVMNALINYYWPGNIRELANVIERAVVLSPSG------ 370 Query: 428 ILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLE 487 ++ +H E ++K+N E ++ I +AL N A +L Sbjct: 371 LISIKHLPRR-----IQENTGWTIIKENTFNLLE-VEKALILKALNSTGWNQTKAAEILG 424 Query: 488 TDVANLHRLAKRLG 501 L K G Sbjct: 425 ISRKQLRTKMKHHG 438 >UniRef50_Q4K714 Sigma-54 dependent DNA-binding response regulator n=6 Tax=cellular organisms RepID=Q4K714_PSEF5 Length = 465 Score = 498 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 139/379 (36%), Positives = 216/379 (56%), Gaps = 12/379 (3%) Query: 129 TLDGMQPDQFDV----FSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQ 184 + M+ +D F +EL + +S AL + N A E + Sbjct: 89 AVQSMRNGAYDYIAKPFDIDELDI-------TVSKALQFRDILKDNQRMR-AELAEHQQI 140 Query: 185 TQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNC 244 ++G SP ++ + ++ V S+ +L++GE+GTGKE+VA+AIH+ RA P V +NC Sbjct: 141 DSLVGDSPAFRRVLQAVDSVRESNATILLTGESGTGKEMVARAIHKHGNRADKPFVAVNC 200 Query: 245 AALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQ 304 AA+PE + ESE+FGH KGAFTGA+++R G+F+ AD GTLFLDE+G++ LALQAK+LR LQ Sbjct: 201 AAIPEGLLESEMFGHRKGAFTGAVADRVGRFQQADKGTLFLDEVGDMPLALQAKILRALQ 260 Query: 305 YGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDD 364 I+ VGD R +VDVRV+AATN++L E V FR DL++RL+VFP+ +P LRER +D Sbjct: 261 ERVIEPVGDPRERKVDVRVIAATNKNLLEAVANKEFREDLYYRLNVFPIPLPALRERVED 320 Query: 365 VILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSG 424 + LLA +F G S A + Y++PGN+REL++ + RA ++A Sbjct: 321 IALLARHFAHSLGATAGKRISGFSPEALQAMASYAWPGNIRELQNCVERATIVATGQVIE 380 Query: 425 DEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACAR 484 ++ + + T + ++ P V +L A ++ I AL Q++ AA A+ Sbjct: 381 EKDLPGYLFGPQAQGTESSAAISVGPQVPSDLEAALAEVEKAYILAALQQSNGVQAAAAQ 440 Query: 485 MLETDVANLHRLAKRLGLK 503 ++ + K+LG++ Sbjct: 441 LIGISERSFWYRLKKLGIQ 459 >UniRef50_A6GDL8 Sigma-54 dependent transcriptional regulator, Fis family protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GDL8_9DELT Length = 590 Score = 498 bits (1282), Expect = e-139, Method: Composition-based stats. Identities = 160/514 (31%), Positives = 242/514 (47%), Gaps = 33/514 (6%) Query: 15 LQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHP 74 L RG+ ++ ++ + L+ + L D R ++ ++ R G Sbjct: 76 LTRGVELDALLVTVVDSIVEHLDAERGTLYLVDGRSRTLTSVVAHLPELERIRLDF-GQG 134 Query: 75 RLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLF-AGQNLIGALTLDGM 133 +A G ++ P +D I Q + + LP+ + +IG L L Sbjct: 135 VAGTVAAQGQIIAVSDPGADPR-FDASIDRQTGFSTRSMLALPIRDSAGEVIGVLQLLNA 193 Query: 134 QPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEA------------ 181 QF + + +A A L L L +++ L +A P + Sbjct: 194 GRGQFTLADQAKATTLATSAGQVLQATSLYADLRARSPLEREADPEPSEAVEEPDPSQSQ 253 Query: 182 ------VKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRA 235 Q++G S M Q+ + A +D VLI+GE+GTGKEL+A+A+H SPR Sbjct: 254 IRPGPKYTFNQIVGESRAMRQVYAIVRKAAGTDATVLITGESGTGKELIARAVHVNSPRR 313 Query: 236 VNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLAL 295 V ++C LPE++ E+ELFGH +GAFTGA GKFE+AD GTLF+DEIGEL L L Sbjct: 314 EQAFVKVDCTTLPEALIENELFGHERGAFTGAHRTAPGKFEVADGGTLFIDEIGELPLTL 373 Query: 296 QAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSV 355 Q KLLRVLQ + +RVG +R D+RV+ AT+RDL V AG FR DL++R+ V P+ + Sbjct: 374 QGKLLRVLQDREFERVGGTTTIRTDIRVICATHRDLPAMVDAGAFREDLYYRVRVVPIEL 433 Query: 356 PPLRERGD-DVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRA 414 PPLR+RG D + L +F ++ R G ++ A+ L + FPGN+RELE+ I A Sbjct: 434 PPLRDRGSADRLRLIEHFVDRYGRRHGRPIHRVTKAAQARLLEHDFPGNIRELENCIESA 493 Query: 415 VVLARATRSGDEVIL----EAQHFAFPEVTLPTPEVAAVPVVKQNL-------REATEAF 463 VVL+ + + +A+ + ++PT + NL + A Sbjct: 494 VVLSDEGTIDVDDLPLAPRKAKRGRTQQGSVPTETGQSSGHSGPNLGLQLGDPTLSLAAI 553 Query: 464 QRETIRQALAQNHHNWAACARMLETDVANLHRLA 497 +R I + N + AR L L R Sbjct: 554 ERAHIEAVVQACEGNQSEAARRLGIGRNTLARKL 587 >UniRef50_D1CFK1 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Bacteria RepID=D1CFK1_THET1 Length = 466 Score = 498 bits (1282), Expect = e-139, Method: Composition-based stats. Identities = 169/465 (36%), Positives = 252/465 (54%), Gaps = 29/465 (6%) Query: 43 LLRYDSRQFIPLAIDGLAKDVLGRR--FALEGHPRLEAIARAGDVVRFPADSELPDPYDG 100 +L D I + L +D G + AL+G ++ + ++ D +P DG Sbjct: 8 ILVADDDPSIRTILRDLLEDE-GYQVSIALDGEQVIDQVQQS-SPDLILMDVRMPK-IDG 64 Query: 101 LIPGQESLKVHACVGLPLFAGQNLIG--ALTLDGMQPDQFDV----FSDEELRLIAALAA 154 I + L+ + +P+ G + T+ MQ +D F +++ Sbjct: 65 -IEVLKQLRARG-MNVPMIV-MTAFGNSSTTIKAMQLGAWDYITKPFDLDDITRTI---- 117 Query: 155 GALSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLIS 214 N +Q S + K +++IG SP M ++ K I +VAASD VLI+ Sbjct: 118 ----NRFFEQQKLSTKVRGRAEEAVAPDKTSRIIGNSPVMQEVYKTIGLVAASDATVLIT 173 Query: 215 GETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGK 274 GETGTGKELVA+ IH S + PLV +NCAALPE++ ESELFGH KG+FTGA R G+ Sbjct: 174 GETGTGKELVAETIHYNSTFSQGPLVKVNCAALPETLLESELFGHEKGSFTGADRQRKGR 233 Query: 275 FEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREE 334 FE+A GT+FLDEIGE++L Q KLLRVLQ + +RVG ++VD RV+AATN+ L EE Sbjct: 234 FELAHKGTIFLDEIGEMTLGTQRKLLRVLQEREFERVGGSSTIKVDTRVIAATNKKLEEE 293 Query: 335 VLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNL 394 V AG+FR DLF+RL+V + +PPLRER +D+ LL YF ++ R + +S A + Sbjct: 294 VAAGKFREDLFYRLNVIHIHLPPLRERKEDIPLLVDYFLQKHRYHKDGPPASISEEAIKV 353 Query: 395 LQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTP-EVAAVPVVK 453 L + +PGNVRELE+ I RAV+LA+ ++ H F ++ +++ V Sbjct: 354 LMEHDWPGNVRELENTIERAVILAQGG------VITTHHLVFSQIRTGRNIDLSEVIDKT 407 Query: 454 QNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAK 498 ++L EA + + I +AL + + A A +L+ + L R + Sbjct: 408 RSLDEAMRIIESKIILEALEKAKGDHALAAEILDISESELKRKLR 452 >UniRef50_A1AL12 Transcriptional regulator, Fis family n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A1AL12_PELPD Length = 687 Score = 498 bits (1282), Expect = e-139, Method: Composition-based stats. Identities = 171/512 (33%), Positives = 252/512 (49%), Gaps = 48/512 (9%) Query: 15 LQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLAKDVLGR----RFAL 70 L + HQ + + L D L++ D + + ++ L R + Sbjct: 187 LPSDLDHQ--IEHALWRLLDHFHGDRCGLIKVDLEGEKTIITHAVYREGLERLPGDVDLV 244 Query: 71 EGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTL 130 P R G F +ELP D ++ + + + +PL + + + Sbjct: 245 ALFPWSFRQLREGRCYCFSDLAELPVEADRDRASWMAMGIRSGLHVPLRVENRVHYLIVV 304 Query: 131 DGMQ---PDQFDVFSDEELRLIAALAAGALSN--------------ALLIEQLESQNMLP 173 + DV + L++I L AL A L ++LE + Sbjct: 305 ESHSGILAGTEDVLN--RLQIIGDLFVNALHRKATEDELRSSCDEIARLKDKLELEADYL 362 Query: 174 GDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASP 233 Q++G S + + +E VA + VL+ GETGTGKELVA+AIH SP Sbjct: 363 RSEVRASRFN-DQIVGQSEPIQGVLAMVEQVAPTPSTVLVYGETGTGKELVAQAIHNHSP 421 Query: 234 RAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSL 293 R +V +NCA+LP S+ ESELFG +GA+TGA++ + G+FE+AD +LFLDEI ELSL Sbjct: 422 RRDKLMVKVNCASLPSSLVESELFGRERGAYTGALTRQMGRFELADGSSLFLDEIAELSL 481 Query: 294 ALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPL 353 LQ+KLLRVLQ G+ +R+G R ++VDVRV+AATNR+L EEV GRFR DL++RLSVFP+ Sbjct: 482 ELQSKLLRVLQEGEFERLGSPRTIKVDVRVIAATNRNLLEEVRKGRFREDLYYRLSVFPI 541 Query: 354 SVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHR 413 VPPLRER +D+ LLA F + G + ++ LQ YS+PGNVREL + I Sbjct: 542 VVPPLRERREDIPLLAWEFVRDFNEKMGKRILRIAKRDMLALQSYSWPGNVRELRNVIEY 601 Query: 414 AVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALA 473 AV+++ GDE+ + PE + P E +R I+ L Sbjct: 602 AVIVS----PGDELKIR-----LPENIVNAPPQMT----------TLEEMERHYIQDVLR 642 Query: 474 QNHHNWA---ACARMLETDVANLHRLAKRLGL 502 + A +L+ + A L+ K+LG+ Sbjct: 643 RTEWRIKGEGGAAHILDLNPATLYSRMKKLGI 674 >UniRef50_C6HY50 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HY50_9BACT Length = 477 Score = 498 bits (1282), Expect = e-139, Method: Composition-based stats. Identities = 149/371 (40%), Positives = 210/371 (56%), Gaps = 13/371 (3%) Query: 131 DGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQTQMIGL 190 D + + + L+ G + + QL ++IG Sbjct: 117 DRHRRTRLVRVNTALLKDADGHVVGGVEIFHDVTQLAELKKELK-----GRYAFGKIIGQ 171 Query: 191 SPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPES 250 S M +L + +VA S VLI GE+GTGKEL+A AIHE SPR P + +NCAAL E Sbjct: 172 SEKMRELFDLLPVVAQSKSTVLIEGESGTGKELIAHAIHENSPRKDGPFIKVNCAALSEG 231 Query: 251 VAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQR 310 V ESELFGHV+GAFTGA+S++ G+FE+A GTLFLDEIGE+S ++Q KLLRVLQ + +R Sbjct: 232 VLESELFGHVRGAFTGAVSSKPGRFELASGGTLFLDEIGEISASMQVKLLRVLQEEEFER 291 Query: 311 VGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAG 370 VG + L+VDVRV+AATNRDL+ + AG FR DL++RL V PL +PPLRER +D+ LL Sbjct: 292 VGGTKTLKVDVRVIAATNRDLKAAIDAGTFRRDLYYRLRVVPLFLPPLRERREDIPLLIS 351 Query: 371 YFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILE 430 F + G + V LS A+N+L ++S+PGN+REL++ I AV+L+ G Sbjct: 352 SFLSRYNAEFGKNVVGLSQEAQNILMNHSYPGNIRELQNIIEHAVLLSTGRTIGVR---- 407 Query: 431 AQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDV 490 P P PE ++ V + A + IR+A+ + N + A++L Sbjct: 408 ----ELPRDLAPIPEESSFADVALSRSNALRTMEDVMIRKAVEKTQGNMSQAAKLLGIGR 463 Query: 491 ANLHRLAKRLG 501 + L R + +G Sbjct: 464 STLWRKLREMG 474 >UniRef50_A0LJL7 Two component, sigma54 specific, transcriptional regulator, Fis family n=21 Tax=Bacteria RepID=A0LJL7_SYNFM Length = 476 Score = 498 bits (1282), Expect = e-139, Method: Composition-based stats. Identities = 172/464 (37%), Positives = 251/464 (54%), Gaps = 18/464 (3%) Query: 43 LLRYDSRQFIPLAIDGLAKDVLGRRF--ALEGHPRLEAIARAGDVVRFPADSELPDPYDG 100 +L D I ++ G+ +D G R A G LE R D +P DG Sbjct: 5 ILVVDDEISILQSLRGVLQDE-GYRIGVAASGEEALEE-LRRDTPDLMLLDIWMP-GMDG 61 Query: 101 LIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNA 160 L +E K HA + + + +G I ++ + F E L ++ NA Sbjct: 62 LAVLEEIKKSHAHLPVIIISGHGNIET----AVKATRMGAFDFVEKPLSLERILVSIKNA 117 Query: 161 LLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTG 220 L +LE +N+L +A + + M G S + L+++I A ++ VLI+GE GTG Sbjct: 118 LDFHRLEEENLLWRQ----KAHRTSHMTGRSEAVESLREQIRRAAPTNATVLITGENGTG 173 Query: 221 KELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADN 280 KEL A+ IH+ S R+ P+V +NCAA+PE + ESELFGH KGAFTGA R G+F++A+ Sbjct: 174 KELAARMIHQLSKRSHRPMVEVNCAAIPEDLIESELFGHEKGAFTGAHERRRGRFDVANG 233 Query: 281 GTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRF 340 GTLFLDEIG++SL QAK+LR+LQ +RVG R ++VDVRV+AATN+D++ E+ AGRF Sbjct: 234 GTLFLDEIGDMSLRTQAKILRILQEQVFERVGGSRTIQVDVRVVAATNKDIQREIEAGRF 293 Query: 341 RADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSF 400 R DL++RL+V P+ VPPLR+R D+ LL F + + R + LQ YS+ Sbjct: 294 RQDLYYRLNVIPIFVPPLRDRLQDIPLLVEDFLDDMAAESAMGRKEIDPAVFGPLQQYSW 353 Query: 401 PGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREAT 460 PGN+REL + I R V++ R G + LP P A P LREA Sbjct: 354 PGNIRELRNFIERMVIMTPGQRIGPRDLPLDFL-----NRLPKPPEEAGPYQCATLREAR 408 Query: 461 EAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLKD 504 F+R + + L + N + A + + ++LHR K LG+++ Sbjct: 409 SVFERAYLLRKLDEFAWNVSLTAAQVGLERSHLHRKMKALGIRE 452 >UniRef50_B5YHF3 Acetoacetate metabolism regulatory protein AtoC n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YHF3_THEYD Length = 455 Score = 497 bits (1281), Expect = e-139, Method: Composition-based stats. Identities = 138/417 (33%), Positives = 231/417 (55%), Gaps = 21/417 (5%) Query: 91 DSELPDPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDV----FSDEEL 146 D +LP DGL + + G+ + + + ++ FD F++EEL Sbjct: 53 DLKLP-GVDGLTLLKHIKTISPQTGVIIITAFAEVKT-AVQAIKDGAFDYIAKPFTNEEL 110 Query: 147 RLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAA 206 L+ + L LE + + + + ++ S M ++ +I+ VA Sbjct: 111 LLV-------IERFLKFRTLEKEVKYLSELVKKKD-EFEGIVSTSSVMKEIFDKIDAVAK 162 Query: 207 SDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTG 266 +D+ VLI GE+GTGKEL+A AI + S R P + +NCAA+PE++ ESELFG+ KGAFTG Sbjct: 163 TDVPVLIQGESGTGKELIANAIQKQSLRKEKPYIKINCAAIPETLFESELFGYEKGAFTG 222 Query: 267 AISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAA 326 A + GKFE+A+ GT+F DEIG++ L+LQAKLLRV++ G + R+G ++++VR + A Sbjct: 223 ATETKKGKFELANGGTIFFDEIGDMPLSLQAKLLRVIEDGIVYRLGGKEPIKINVRCIYA 282 Query: 327 TNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVV 386 T+++L+E + A +FR DLF+R++V P+++PPL+ER +D+ +L F + + G + Sbjct: 283 TSKNLKELIKAEKFREDLFYRINVMPIAIPPLKERKEDIPVLIEKFLKIFSEKYGKQNIT 342 Query: 387 LSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEV 446 +S A L Y +PGNVREL+HAI RA++L++ + +++ +H L + + Sbjct: 343 ISPSAYEALLSYDYPGNVRELKHAIERALLLSK------DGVIDIKHLPEEFSPLSSFQK 396 Query: 447 AAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 + +L+E E F++ I +AL + A+ L L K G++ Sbjct: 397 KCF-ISNFSLKECIENFEKNLIIKALQECGWKKTEAAKKLGISRKALWEKIKFYGIE 452 >UniRef50_A9G6P0 Sigma-54 dependent DNA-binding response regulator n=2 Tax=Myxococcales RepID=A9G6P0_SORC5 Length = 481 Score = 497 bits (1281), Expect = e-139, Method: Composition-based stats. Identities = 159/487 (32%), Positives = 248/487 (50%), Gaps = 27/487 (5%) Query: 35 VLECDASALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSEL 94 +L L+ D + L++D A +G L A + + D + Sbjct: 1 MLPEKKQILVVDDEANLRRVLSAQLSRDGYEVHTAEDGEEGL-AFLKEHHIDLVITDLRM 59 Query: 95 PDPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDV----FSDEELRLIA 150 P DG+ + +L+ + L + ++ ++ FD F E+R++ Sbjct: 60 PK-VDGMDLLRAALRDDPSRPVVLLTAHGTVDN-AVEALKTGAFDYITKPFDQNEVRVV- 116 Query: 151 ALAAGALSNALLIEQLESQNMLPG--DATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASD 208 + AL L S + A P + +IG SP + +L +E VA + Sbjct: 117 ------VKKALRTRDLASADATRDVSAAQPRGGSDRFGIIGESPPIQELYAILERVADTP 170 Query: 209 LNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAI 268 VLISGE+GTGKELVA+A+HE S R P + +NCAA+P+ + ESELFG+ +GAFTGA+ Sbjct: 171 TTVLISGESGTGKELVARALHENSGRRDRPFIKVNCAAIPKDLMESELFGYERGAFTGAV 230 Query: 269 SNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATN 328 +++ G+FE+A GTLFLDEIGE+ +Q KLLRVLQ + +RVG + + VDVR++AATN Sbjct: 231 ASKPGRFELASGGTLFLDEIGEIPNEMQVKLLRVLQESEFERVGGIKTIHVDVRLVAATN 290 Query: 329 RDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLS 388 RDL+ E+ AG FR DLF+RL+V P+++P LR+R D+ L +F + R S + Sbjct: 291 RDLKREIAAGTFREDLFYRLNVVPIALPALRDRRSDIPHLCAHFVAKFNARLKKSIESIE 350 Query: 389 AGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILE-----------AQHFAFP 437 A L +++PGN+RELE+ + RA++ A R + + E A Sbjct: 351 PEALERLASHAWPGNIRELENVVERALLFADGARIRLDDLPEEIRGGATSAPGAALPLAA 410 Query: 438 EVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLA 497 + + +K+ ++ A +R+ I +AL Q H N AR+L+ L Sbjct: 411 AAADTSAAPSTPDGLKEQVKAAMSKLERDLIERALKQTHGNVTHAARLLKISRKGLQLKM 470 Query: 498 KRLGLKD 504 K L L++ Sbjct: 471 KELNLRE 477 >UniRef50_Q1Q1B9 Strong similarity to sigma 54 response regulator protein n=3 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q1B9_9BACT Length = 469 Score = 497 bits (1280), Expect = e-139, Method: Composition-based stats. Identities = 140/384 (36%), Positives = 214/384 (55%), Gaps = 12/384 (3%) Query: 123 NLIGALT--LDGMQPDQFDVFSDE-ELRLIAALAAGALSNALLIEQLESQNMLPGDATPF 179 GA++ + ++ +D + + + +A AL L E+L L G+ Sbjct: 84 TAYGAISTAVQAIREGAYDYVTKPFRYQEMLKVAKNALEKKELKERL---KYLEGEVR-- 138 Query: 180 EAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPL 239 E K +IG S M ++ K V+ ++ VLI+GE+GTGKEL+A+AIH PR+ P Sbjct: 139 EKYKLEGIIGNSAVMVEVLKVTADVSRTESTVLITGESGTGKELIARAIHYNGPRSGYPF 198 Query: 240 VYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKL 299 V +NC ALPE++ ESELFGH KG+FTGA+ + G F A GT+FLDEIGE S + Q KL Sbjct: 199 VVINCGALPENLQESELFGHAKGSFTGAVKEKVGLFHHAHKGTIFLDEIGETSASTQVKL 258 Query: 300 LRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLR 359 LR LQ G+I++VG ++ + VDVR++AATN +L V GRFR DLF+R++V + +P L+ Sbjct: 259 LRFLQDGEIRQVGGNKSIHVDVRIIAATNENLERAVNQGRFRKDLFYRINVIRIHLPQLK 318 Query: 360 ERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLAR 419 ER +D+ LL YF E + + V S A +L +Y +PGN+REL++ + RAV L++ Sbjct: 319 ERKEDIPLLVNYFLELYTDKLKKDKRVFSGSAMAVLLNYDWPGNIRELQNIVERAVALSK 378 Query: 420 ATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNW 479 G E + + P +V VK ++ E ++ I +A+ + N Sbjct: 379 NQVIGVEALPLPTGGFVAHNSNPERDV----TVKSSIVETLSEQEKNAIVEAMNKYGGNQ 434 Query: 480 AACARMLETDVANLHRLAKRLGLK 503 +++L L R K+ +K Sbjct: 435 TKVSQVLGISTTTLWRKIKKYKIK 458 >UniRef50_D2QGL7 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Flexibacteraceae RepID=D2QGL7_9SPHI Length = 488 Score = 497 bits (1280), Expect = e-139, Method: Composition-based stats. Identities = 146/379 (38%), Positives = 213/379 (56%), Gaps = 24/379 (6%) Query: 128 LTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQTQM 187 L+L +Q + ++ L ALA L +QL+++N + + ++ Sbjct: 128 LSLRRLQQSMEQLVAERTQALTKALAEV----ERLKDQLQAENTYLREEIK-QTKNFDEI 182 Query: 188 IGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAAL 247 + S ++ + +E VA ++ VLI GE+GTGKEL+A+A+H S R PLV +NCAAL Sbjct: 183 VTQSKAFQKVLRSVEQVAPTNTTVLILGESGTGKELLARAVHNLSSRKNKPLVKINCAAL 242 Query: 248 PESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGD 307 P ++ ESELFGH KGAFTGA + + G+FE+AD GT+FLDEIGE+ L LQAKLLRVLQ G+ Sbjct: 243 PATLIESELFGHEKGAFTGATAQKVGRFELADGGTIFLDEIGEMPLDLQAKLLRVLQEGE 302 Query: 308 IQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVIL 367 +RVG + ++V+VRV+AATNRDL E GRFR DL++RLSVFP+ PLR R +D+ L Sbjct: 303 FERVGSTKTMKVNVRVIAATNRDLEIESAEGRFREDLYYRLSVFPIVSLPLRTRKEDIPL 362 Query: 368 LAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEV 427 L +FC + G + + A + L Y +PGN+RELE+ + RA++++ Sbjct: 363 LVRHFCAKHGADMGKTIDTIPATVLDTLTDYHWPGNIRELENLVQRALIMSPGRTLVIGD 422 Query: 428 ILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWA---ACAR 484 L + A + TL T E +R I L H + AR Sbjct: 423 WLRKKPLANQKATLMT----------------MEEAERAHIISVLELTHWKVSGDNGAAR 466 Query: 485 MLETDVANLHRLAKRLGLK 503 +L+ L K+LG++ Sbjct: 467 LLDMIPTTLDSRMKKLGIR 485 >UniRef50_C7PN78 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PN78_CHIPD Length = 541 Score = 496 bits (1279), Expect = e-139, Method: Composition-based stats. Identities = 154/407 (37%), Positives = 215/407 (52%), Gaps = 29/407 (7%) Query: 113 CVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQ--- 169 + + + GQ G L L Q D F I + +SN L E +E Q Sbjct: 134 MMAVKICNGQQPKGLLYLFTDQRDAFSEVDARLTNAITNILGIGISNILANETIEKQLQE 193 Query: 170 -----NMLPGDATPFEAVK-----QTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGT 219 L + + + ++G S M + + VA S+ VL+ GETGT Sbjct: 194 IERFRQKLQNENHYLQEQQGLQNTFADIVGTSAEMQRRITILSRVAPSESTVLLLGETGT 253 Query: 220 GKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMAD 279 GKE+ A+AIH SPR N ++ +NCAALP + ESELFGH KG+FTGA R GKFE+AD Sbjct: 254 GKEVFARAIHAGSPRRDNLMIKVNCAALPPHLIESELFGHEKGSFTGATQRRIGKFELAD 313 Query: 280 NGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGR 339 + TLFLDEIGEL L Q+KLLRVLQ +I+R+G ++V+VR++AATNR+L EEV AGR Sbjct: 314 HSTLFLDEIGELPLEFQSKLLRVLQEKEIERIGGKGSIKVNVRIVAATNRNLEEEVRAGR 373 Query: 340 FRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYS 399 FR+DL++RL VFP+++PPLRER +D+ LA +F ++ +SA A L HY Sbjct: 374 FRSDLYYRLHVFPIAIPPLRERKEDIPALANHFLQRFAANSRREAPSISAKAMEGLMHYE 433 Query: 400 FPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREA 459 +PGNVRELEH + R ++L ++ LP V A Sbjct: 434 WPGNVRELEHLMERTLLLTTTPVIA-------------KIDLPGVPVTASKDPDSTFILP 480 Query: 460 TEAFQRETIRQALAQNHHNWA---ACARMLETDVANLHRLAKRLGLK 503 + ++E I + L + A A L+ L+ K+LG+K Sbjct: 481 LDLMEKEYILKVLKLCNGRIAGPNGAAAKLKLPSTTLNSRMKKLGIK 527 >UniRef50_UPI00016C585F ornithine decarboxylase inhibitor-putative sigma54 transciptional regulator n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C585F Length = 643 Score = 496 bits (1279), Expect = e-139, Method: Composition-based stats. Identities = 164/476 (34%), Positives = 235/476 (49%), Gaps = 21/476 (4%) Query: 30 TTLRQVLECDASALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVV--R 87 + + + A+L + + L + + E ++ ++ Sbjct: 184 DAVFRATPAEVVAVLALKEGRELELVTHRVRNGGPATYHKVSQFVSSEVLSDRQAILAEN 243 Query: 88 FPADSELPDPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELR 147 D L D LKV + + P+ A ++G L L D E Sbjct: 244 VATDRMLKD-----RDSIAELKVASLICAPIMADDKVLGLLHLYRTIGHAPLNADDLEFT 298 Query: 148 LIAALAAGALSNALLIEQ-LESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAA 206 L A G + + + L ++N E ++++G S + Q++ ++ VA Sbjct: 299 LAVARHLGTVWHRFSRQASLSAENRSLRSQLKIE----SEIVGESAVLQQIESQVVRVAE 354 Query: 207 SDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTG 266 + VL+ GE+G+GKELVA+AIH SPR + LNCAAL E++ ESELFGH KGAFTG Sbjct: 355 TRATVLVRGESGSGKELVARAIHLHSPRREGAFICLNCAALTETLLESELFGHEKGAFTG 414 Query: 267 AISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAA 326 A GKFE ADNGT+FLDEIGE++L+ QAK LRVL+ +RVG + ++VDVRV+AA Sbjct: 415 ATERMVGKFEAADNGTIFLDEIGEMALSTQAKFLRVLEGHPFERVGGNTAIKVDVRVVAA 474 Query: 327 TNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVV 386 TNR L E V AG FR DLF+RL V L VPPLR+R DDV LLA +F ++ Sbjct: 475 TNRPLEEAVRAGTFRRDLFYRLQVVQLDVPPLRDRLDDVPLLAEHFLKRFARETARKFKG 534 Query: 387 LSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEV 446 + A + L+ Y +PGNVREL + I RAV L + L+A + + P V Sbjct: 535 FTPEALDKLRAYRWPGNVRELRNVIERAVALGNGPQ------LDAADIWLSGLDVGAPVV 588 Query: 447 AAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 +A V K E E ++ I + L N + A +L + + L R R GL Sbjct: 589 SAALVYKP---ETIEEVEKRHILETLKHTDWNKSRAATILGIERSTLDRKIDRYGL 641 >UniRef50_D0Z425 Formate hydrogenlyase transcriptional activator n=1 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0Z425_LISDA Length = 739 Score = 496 bits (1278), Expect = e-139, Method: Composition-based stats. Identities = 158/537 (29%), Positives = 254/537 (47%), Gaps = 41/537 (7%) Query: 6 DVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLAKDVLG 65 VL +I + ++ L+ L Q ++++ ++ + + Sbjct: 198 QVLVDITNTVISQSTKKELISSLLHFLYQHFAMTELSIIQLQDNHYMQMFCGLNNNNTEF 257 Query: 66 RRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFAGQNLI 125 ++ V + D P S AC+ +P+ I Sbjct: 258 HCHFFNDDKMIKHAIENNKPVLLDHNQLEQIRQDENGPYFPSKVKSACI-VPMVFRGLTI 316 Query: 126 GALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIE----QLESQNMLPGDATPFEA 181 G + + + + E ++ IA+ A A+ + + + E++ + + + E Sbjct: 317 GYICYMKRETLNYQQYDIELVQQIASRVALAMHSIKAHQATLPRTETEQYVSIEESYDEH 376 Query: 182 VKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVY 241 +I S M Q+ +++ +VA+ D VLI GE+GTGKEL+A+AIH+ S R+ +V Sbjct: 377 AIFDDIISQSEAMNQVLEKVAMVASCDSTVLILGESGTGKELIARAIHKMSLRSKTRMVK 436 Query: 242 LNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLR 301 +NCAA+P + ESELFGH +GAFTGAIS R G+FE A GTLFLDEIG++ L LQ KLLR Sbjct: 437 MNCAAIPAGLFESELFGHERGAFTGAISQRVGRFEQAHKGTLFLDEIGDMPLELQPKLLR 496 Query: 302 VLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRER 361 LQ +I+RVG ++ + VDVR++ ATN DL V A +FR DL++RL+VFP+ VPPLR+R Sbjct: 497 ALQENEIERVGKNQLISVDVRIVVATNVDLLAMVDAKQFRNDLYYRLNVFPIEVPPLRQR 556 Query: 362 GDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARA- 420 +D+ LL +F Q + G ++A L+Q +S+PGNVREL + + R+V+L R Sbjct: 557 AEDIPLLVKHFARQLAQKMGKKITAIAASDLELMQRFSWPGNVRELHNFVERSVILTRGH 616 Query: 421 --TRSGDEVILEAQHFAFPEVTLPT---------------PEVAAVPVVKQNLREAT--- 460 DE+I H + + P+VA++ + + E+ Sbjct: 617 VLNIPVDELISLQPHIVQNSRKMESQASLSKTSLKQAQELPQVASIDDLTSSGSESVCSV 676 Query: 461 ------------EAFQRETIRQALAQNHHNWA---ACARMLETDVANLHRLAKRLGL 502 + I AL + A A ML L +++G+ Sbjct: 677 DTAAKNEVKKVRPIVDQSMIINALKRCQGVIAGPNGAANMLGLKRTTLLSRMQKMGI 733 >UniRef50_C0QRG3 Transcriptional regulatory protein ZraR n=2 Tax=Aquificales RepID=C0QRG3_PERMH Length = 442 Score = 496 bits (1278), Expect = e-139, Method: Composition-based stats. Identities = 133/346 (38%), Positives = 205/346 (59%), Gaps = 13/346 (3%) Query: 158 SNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGET 217 ++I+Q + L + +++ T +I SP M Q+ + + +A D VLI+GE+ Sbjct: 109 ELKIIIDQALEVSDLKKELNELKSLLSTDIIAESPQMKQVLETAKKIAPFDTTVLITGES 168 Query: 218 GTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEM 277 GTGKE++A IH+ S R P + +NC A+P + ESELFG+ KGAFTGA +++ G E Sbjct: 169 GTGKEMIANFIHKNSLRKERPFIAINCGAIPSELLESELFGYKKGAFTGANTDKKGLIEE 228 Query: 278 ADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLA 337 A+ GTLFLDEIGEL L LQ KLLRVLQ +I+ +G +R ++DVR +AATNRDL++ V Sbjct: 229 AEGGTLFLDEIGELPLDLQVKLLRVLQENEIKPIGSNRPKKIDVRFIAATNRDLKKMVEE 288 Query: 338 GRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQH 397 G+FR DL++R++V P+ +PPLRER +D+I LA YF + R G+ + LS AR L + Sbjct: 289 GKFREDLYYRINVIPIHIPPLRERKEDIIPLAQYFINKFCSRYGIPKKRLSEKAREKLLN 348 Query: 398 YSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLR 457 Y + GNVRELE+ I RAV+ D + ++ + + P + Sbjct: 349 YDYKGNVRELENIIERAVLTTEGEEITDIPVTVSKRYILSQELKP-------------FK 395 Query: 458 EATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 EA + F+ ++ L + N + +++ A ++R+ KR G++ Sbjct: 396 EAKKEFEESYLKNLLEKTDFNISKASKIAGITRAQIYRMIKRYGIE 441 >UniRef50_B8FEY3 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Deltaproteobacteria RepID=B8FEY3_DESAA Length = 460 Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats. Identities = 152/431 (35%), Positives = 229/431 (53%), Gaps = 21/431 (4%) Query: 78 AIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQ 137 I DV D ++P DG+ + + + + + + + M+ Sbjct: 39 QILEGSDVDLVLTDMKMP-GMDGMELMERIKTRDPDLPVLMMTAYGTV-DMGMAAMEKGA 96 Query: 138 FDV----FSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPG 193 + F +E+L L + AL + ++ +N L + + +IG SP Sbjct: 97 YSYIWKPFQNEQLILF-------VKQALAMYRVVQENRLLKNELG-DRYSFGNIIGKSPA 148 Query: 194 MTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAE 253 M + I VA ++ VLI GE+GTGKE+VAK+IH S R P V +NCAAL ES+ E Sbjct: 149 MVNIFDTIVKVAPTNATVLIQGESGTGKEMVAKSIHFNSHRKDAPWVAVNCAALAESILE 208 Query: 254 SELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGD 313 SELFGH KGAFTGA + + G+FE+AD GTLFLDEIGE+S +LQ KLLRVLQ +RVG Sbjct: 209 SELFGHEKGAFTGAAAMKKGRFELADGGTLFLDEIGEISSSLQVKLLRVLQEKTFERVGG 268 Query: 314 DRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFC 373 + + VD+R++AATNRDL++EV FR DLF+RL+V P+ +PPLRER D+ LL +F Sbjct: 269 VKPIEVDIRLIAATNRDLKKEVENSAFREDLFYRLNVLPIQLPPLRERQKDIPLLVDHFL 328 Query: 374 EQCRL--RQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEA 431 ++ + L Q Y++PGNVRELE+ I RA++L + D + + Sbjct: 329 QKYASGPSGESRVRKVHPDVHRLFQEYAWPGNVRELENVIERAIILCNS----DAISVND 384 Query: 432 QHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVA 491 T + +PV L E ++ I++A+ + + + A++L + Sbjct: 385 LPRELTRSVSNTLHMEGIPV-DATLYETLSMVEQAMIKRAMLMSDNVQSHAAQILGIGKS 443 Query: 492 NLHRLAKRLGL 502 L++ K+ GL Sbjct: 444 GLNQKIKKFGL 454 >UniRef50_C7PEX2 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PEX2_CHIPD Length = 653 Score = 495 bits (1276), Expect = e-138, Method: Composition-based stats. Identities = 145/411 (35%), Positives = 220/411 (53%), Gaps = 28/411 (6%) Query: 106 ESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQ 165 + L+++A + + + + ++ D + EEL + + L+EQ Sbjct: 251 DHLRLNARLAIAVTLPAGNLAVISFYSRNADTYT----EELFTLLGRMENGIRQ--LLEQ 304 Query: 166 LESQNMLP----------GDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISG 215 ++ +N V ++G SP + I +V+A+ +VLI G Sbjct: 305 IQQKNDALSARIVARKRVEKPLIDNEVLFEGIVGRSPVFLSVLHSINMVSAAPSSVLILG 364 Query: 216 ETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKF 275 E+GTGKEL+A+ IH SPR PL+ +NCAALP + ESELFGH KGAFTGA R+GKF Sbjct: 365 ESGTGKELIARCIHRQSPRKNKPLITVNCAALPAELIESELFGHEKGAFTGATDKRAGKF 424 Query: 276 EMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEV 335 EMAD GT+FLDEIGEL + Q KLLRVLQ + +RVG + ++VDVRV+AATNR+L +EV Sbjct: 425 EMADGGTIFLDEIGELPIESQVKLLRVLQEKEFERVGGSKVIKVDVRVIAATNRNLEKEV 484 Query: 336 LAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLL 395 GRFR DL++RL+VFP+ +P LRER +D+ LLA +F ++ + + +S A L Sbjct: 485 AEGRFRLDLYYRLNVFPVELPSLRERKEDIPLLAQHFVDKLSEKLSRNITDISPDALKAL 544 Query: 396 QHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQN 455 + Y +PGN+RE+EH + R++++ T ++ + P + N Sbjct: 545 RSYDWPGNIREMEHVMERSLLMTTGTILKQIMLPK---------MAAQPVGTTISSADGN 595 Query: 456 LREATEAFQRETIRQALAQNHHN---WAACARMLETDVANLHRLAKRLGLK 503 + E + E I Q L A +L + L+ ++LG+K Sbjct: 596 RIKTLEEMEIEHILQVLKSCKGKVCGVGGAAELLGLPPSTLNSKIRKLGIK 646 >UniRef50_C6VVC1 Sigma54 specific transcriptional regulator, Fis family n=3 Tax=Sphingobacteriales RepID=C6VVC1_DYAFD Length = 650 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 144/417 (34%), Positives = 214/417 (51%), Gaps = 23/417 (5%) Query: 97 PYDGLIPGQESLKVHACVGLP-LFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAG 155 P LI G+ ++ + + + + +PD F E + Sbjct: 242 PLKKLIAGKFDMRSNLVMPIANISIDGKQF-FFCFYSRRPDAFGEQDLELCARLQPAIES 300 Query: 156 ALSNALLIEQLESQNMLPGDA------TPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDL 209 A+ + +M A + E+ M+G S M + I VA SD Sbjct: 301 AIRKMIRAASTSGPDMELDHAIEVMAGSRSESPVFDSMVGQSHLMLNILDLISQVAPSDT 360 Query: 210 NVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAIS 269 +VLI+GE+GTGKE VA IH+ SPR P V +NCAALP ++ ESELFGH KGAFTGA Sbjct: 361 SVLITGESGTGKEHVADTIHQLSPRKSKPFVKVNCAALPINLIESELFGHEKGAFTGATE 420 Query: 270 NRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNR 329 R G+FE AD GT+FLDEIG++ L +Q KLLRVLQ +I+RVG + +++++RV+ ATNR Sbjct: 421 RRIGRFEQADGGTIFLDEIGDMPLEVQVKLLRVLQQREIERVGGTQPIKINIRVITATNR 480 Query: 330 DLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSA 389 +L + G+FR D+++RL+VFP+++P LRER +D+ L +F + G + +S Sbjct: 481 NLERAIAEGKFRLDIYYRLNVFPIAMPALRERTEDIAPLVHHFIGYFGRKTGKNISGISD 540 Query: 390 GARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAV 449 A +L Y +PGN+RELE+ I R+V+LA+ D V L A P V + Sbjct: 541 RALAMLMDYGWPGNIRELENVIERSVLLAKGNSI-DTVYLPAH-----------PAVEGI 588 Query: 450 PVVKQNLREATEAFQRETIRQALAQNHHNWA---ACARMLETDVANLHRLAKRLGLK 503 + + +R+ I L + A++L L K+LG+K Sbjct: 589 AKAGPPVLKNIFENERDHIISVLKACEGRISGENGAAKILAIPPTTLSSKMKKLGIK 645 >UniRef50_C4FI59 AAA family ATPase n=1 Tax=Sulfurihydrogenibium yellowstonense SS-5 RepID=C4FI59_9AQUI Length = 531 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 128/322 (39%), Positives = 192/322 (59%), Gaps = 14/322 (4%) Query: 181 AVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLV 240 A ++++I S M + + VA + NVL+ GE+GTGK ++AK IH S R P V Sbjct: 223 ASNKSRLITKSSLMVYVLDIAKTVADTTANVLLEGESGTGKNVLAKYIHNQSSRRDKPFV 282 Query: 241 YLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLL 300 +NCAA+P+++ ESELFG+VKGAFTGA+ ++ GK E+AD GTLFLDEIGEL LQ+KLL Sbjct: 283 KINCAAIPDNLLESELFGYVKGAFTGAVKDKPGKVELADGGTLFLDEIGELPTYLQSKLL 342 Query: 301 RVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRE 360 ++Q + +R+GD + +VDVR++AATN+DL + V G+FR DL++RL V + VP LRE Sbjct: 343 HLIQEKEFERLGDTKTKKVDVRIIAATNKDLSQLVKEGKFREDLYYRLKVISIKVPALRE 402 Query: 361 RGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARA 420 R +D+ L YF + + +S A LL +Y +PGN+RELE+ I RAV+LA+ Sbjct: 403 RKEDIPFLINYFIDLYSKQYNKHIKGISPEAVRLLLNYDYPGNIRELENIIERAVILAKG 462 Query: 421 TRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWA 480 + + + +T + +L E + +++ I + L + N + Sbjct: 463 KFIEVSDLPDEIVYNTKILT------------QNDLDEEID--EKQKILRVLESVNWNKS 508 Query: 481 ACARMLETDVANLHRLAKRLGL 502 A++L D L R K+ GL Sbjct: 509 KAAKILNIDRVTLWRKLKKYGL 530 >UniRef50_Q1D4K8 Sigma-54 dependent DNA-binding response regulator n=3 Tax=Myxococcus RepID=Q1D4K8_MYXXD Length = 471 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 153/428 (35%), Positives = 217/428 (50%), Gaps = 20/428 (4%) Query: 77 EAIARAGD--VVRFPADSELP--DPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDG 132 EA+AR G+ D +P D L +E V + FA ++ Sbjct: 38 EALARIGEFSPAVVLTDVRMPQMDGLTLLKTAREQGSDATFVMMTAFASVET----AVEA 93 Query: 133 MQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSP 192 M+ + L A L L L + D + +IG SP Sbjct: 94 MKSGADNFLLK---PLDADQVLVTLGKVLEKRSLRQEAEALRDQVRSRVRRFHDIIGESP 150 Query: 193 GMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVA 252 + + I A + VLI GE+GTGKEL+A+A+H+ SPR P + ++CAAL E++ Sbjct: 151 QLQGIYDVIRRAAGTRATVLILGESGTGKELIAQALHQESPRKDKPFIRVHCAALSENLL 210 Query: 253 ESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVG 312 ESELFGH KG+FTGA++ + G+FE+AD GTLFLDEIGE+S A+Q KLLRVLQ + +RVG Sbjct: 211 ESELFGHEKGSFTGALARKEGRFELADGGTLFLDEIGEISPAVQVKLLRVLQQREFERVG 270 Query: 313 DDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYF 372 + L+VDVR++AAT+RDL EV AGRFR DL++RL+V +++PPLR+R DV L +F Sbjct: 271 GTQTLKVDVRIVAATHRDLVAEVKAGRFREDLYYRLNVVSVTLPPLRDRKSDVPALVNHF 330 Query: 373 CEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQ 432 E+ G L+ G L + +PGN+RELE+AI RAVVLA+ + + Sbjct: 331 LEKYSDSYGKQVRGLAPGTLQALLSHDWPGNIRELENAIERAVVLAQGQELSTDDLPPVL 390 Query: 433 HFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVAN 492 P T + A +RE I + L + + A +L V Sbjct: 391 RGPRPHGTSTGALIPGA---------TLAAIEREAILRTLEMVQGSTSRAAEVLGISVRK 441 Query: 493 LHRLAKRL 500 + K Sbjct: 442 IQYRLKEY 449 >UniRef50_A9AYA4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AYA4_HERA2 Length = 457 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 165/445 (37%), Positives = 234/445 (52%), Gaps = 22/445 (4%) Query: 62 DVLGRRFALEGHP--RLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLF 119 D G H L + + D +P DGL E L+ + + Sbjct: 28 DEEGYLTEPAEHGGEVLAKMTKKHPYDLLIMDVRMP-GQDGL-TILEQLRKNGITTPVIM 85 Query: 120 AGQNLIGALTLDGMQPDQFDV----FSDEELRLIAALAAGALSNALLIEQLESQNMLPGD 175 + + + +Q +D F EE+ L+ A + +LE+++ P D Sbjct: 86 MTAHGTSSTAIRAIQIGAYDYVIKPFDVEEVTLVVKRLFDHQQLASKVRELEAKSFDPRD 145 Query: 176 ATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRA 235 MIG SP M ++ K+I VA +D VLI+GETGTGKE++A IH S R Sbjct: 146 K----------MIGNSPAMQEIYKQIGRVAHTDATVLITGETGTGKEVLANLIHVNSARR 195 Query: 236 VNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLAL 295 P+V +NCAALPES+ ESELFGH KGAFTGA++ R G+FE+A G++FLDEIGE++LA Sbjct: 196 NGPMVKVNCAALPESLLESELFGHEKGAFTGAVAQRKGRFELAHKGSIFLDEIGEMTLAT 255 Query: 296 QAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSV 355 Q KLLR+LQ + +RVG +RVDVRV+AATNRDL +V AG FR DL++RL+V L + Sbjct: 256 QKKLLRILQEREFERVGGTTTVRVDVRVIAATNRDLEADVRAGTFREDLYYRLNVITLHL 315 Query: 356 PPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAV 415 P LR+R D+ LLA +F ++ R +S A L +Y +PGNVR+LEH I RAV Sbjct: 316 PALRQRIGDIPLLAEFFLDKYRYAPSSPPARISEEAMERLNNYDWPGNVRQLEHEIERAV 375 Query: 416 VLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQN 475 +L+R + E + ++AA K L E +R +++AL Q+ Sbjct: 376 ILSRGNV----ITSEHMSLVPSSRSALQVDIAARLREKSTLEELLADVERLALQEALVQH 431 Query: 476 HHNWAACARMLETDVANLHRLAKRL 500 + AR L A + K+ Sbjct: 432 DDDLKVAARSLGLSEAEFQKRQKKY 456 >UniRef50_C6E9E0 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Deltaproteobacteria RepID=C6E9E0_GEOSM Length = 467 Score = 494 bits (1274), Expect = e-138, Method: Composition-based stats. Identities = 148/370 (40%), Positives = 206/370 (55%), Gaps = 13/370 (3%) Query: 128 LTLDGMQPDQF----DVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVK 183 +T + ++ F F+ EEL + L + L+S++ A+ Sbjct: 89 MTANLLKAGAFFYLEKPFNLEELET-------HVKRGLEHQALQSKSFRSKPCIKNRAL- 140 Query: 184 QTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLN 243 +IG S M L + IE VA SD VLI GE+GTGKELVA+AIH+ S R+ V LN Sbjct: 141 LNNIIGESEKMLSLFEMIEKVATSDSTVLIQGESGTGKELVARAIHDLSNRSDKNFVALN 200 Query: 244 CAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVL 303 CAA+P+ + ESELFGHVKG+FTGA+++R G+FEMAD GTLFLDEIG++ LQ KLLRVL Sbjct: 201 CAAIPDELLESELFGHVKGSFTGAVASRIGRFEMADKGTLFLDEIGDMKANLQVKLLRVL 260 Query: 304 QYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGD 363 Q +++ VG R +VDVR++AATN++L V + FR DL++RLSV P+ +PPLRERG Sbjct: 261 QSRELEPVGSTRSKKVDVRIIAATNQNLDHMVASKEFREDLYYRLSVIPIMLPPLRERGS 320 Query: 364 DVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRS 423 DV LL F E+ + +L +Y +PGNVRELE+ + R V++ Sbjct: 321 DVPLLLNSFLEKFNRSKQRKVQGFDKQVMEILSNYDWPGNVRELENLVERLVIIKTTGVI 380 Query: 424 GDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACA 483 + E ++ T+ E +P L A E F+ I QAL ++ N A Sbjct: 381 SIHDLPE-KYRGGRTTTVLHGEPMTLPDDGFCLNSAVEEFENRLILQALEKSGGNKKEAA 439 Query: 484 RMLETDVANL 493 +L L Sbjct: 440 ELLNLKRTTL 449 >UniRef50_A5G9U3 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Deltaproteobacteria RepID=A5G9U3_GEOUR Length = 466 Score = 494 bits (1273), Expect = e-138, Method: Composition-based stats. Identities = 145/370 (39%), Positives = 205/370 (55%), Gaps = 15/370 (4%) Query: 128 LTLDGMQPDQF----DVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVK 183 +T + ++ F F+ EEL + L + L+ Q+ ++ Sbjct: 89 MTANLLKAGAFFYLEKPFNLEELET-------HVKRGLEHQALQRQSFKSKPCIKNRSL- 140 Query: 184 QTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLN 243 +IG S M L + IE VA SD VLI GE+GTGKELVA+AIH+ S RA V +N Sbjct: 141 LNNIIGESDRMLSLFEMIEKVAGSDSTVLIQGESGTGKELVARAIHDLSNRATKNFVPVN 200 Query: 244 CAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVL 303 CAA+P+ + ESELFGHVKG+FTGA++ R G+FEMAD GTLFLDEIG++ LQ KLLRVL Sbjct: 201 CAAIPDDLLESELFGHVKGSFTGAVATRIGRFEMADRGTLFLDEIGDMKPNLQVKLLRVL 260 Query: 304 QYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGD 363 Q +++ VG R +VDVR++AATN++L V + FR DL++RLSV P+++PPLRER Sbjct: 261 QNKELEPVGAARTKKVDVRIIAATNQNLEHLVASKIFREDLYYRLSVIPITLPPLRERKT 320 Query: 364 DVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRS 423 D+ LL F E+ + ++L ++ +PGNVRELE+ + R V+L + Sbjct: 321 DIPLLLNNFLEKFNRNKQRKVQSFDKNTMDILCNFDWPGNVRELENLVERLVILKGSGTI 380 Query: 424 GDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACA 483 + + E + P E +P L A E F+ + I QAL + N A Sbjct: 381 TFQDLPEKYRGI---KSAPKSERLTLPDTGFCLNSAVEDFENQLILQALEKTGGNKKEAA 437 Query: 484 RMLETDVANL 493 +L L Sbjct: 438 TLLNLKRTTL 447 >UniRef50_B5EIR5 Transcriptional regulator, NifA subfamily, Fis Family n=6 Tax=Bacteria RepID=B5EIR5_GEOBB Length = 664 Score = 494 bits (1273), Expect = e-138, Method: Composition-based stats. Identities = 148/444 (33%), Positives = 239/444 (53%), Gaps = 39/444 (8%) Query: 79 IARAGDVVRFPADSELPDPYDGLIP-GQESLKVHACVGLPLFAGQNLIGALT-LDGMQPD 136 + + G+ R EL D + ++ + + + +P G ++GA+T + Sbjct: 224 MIQLGESFRVSDVEELSDKFWREKQYCKDQGGIKSIMFIPASVGGTIVGAITFVSYSVKK 283 Query: 137 QFDVFSDEELRLIAALAAGALSNAL--------------LIEQLESQNMLPGDATPFEAV 182 ++ + LRL+ + A AL L ++LE++N+ D E Sbjct: 284 EWPDELTQRLRLLWEVFANALERKRADQKIQNALAEIRQLKDRLEAENVYLRDQIDVE-Y 342 Query: 183 KQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYL 242 K ++IG S + + ++I+ VA +D VLI GETGTGKEL+A+AIH A R ++ + Sbjct: 343 KHEEIIGKSEAIRNVLQQIQQVAPTDSTVLILGETGTGKELIARAIHNAGQRKARAMIKV 402 Query: 243 NCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRV 302 NCAALP ++ E+ELFGH KGA+TGA+S++ G+FE A+ T+FLDEIGEL L LQ+KLLRV Sbjct: 403 NCAALPAALIEAELFGHEKGAYTGAVSSQIGRFEAANGSTIFLDEIGELPLELQSKLLRV 462 Query: 303 LQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERG 362 +Q G +R+G+ + ++ DVRV+AATN L++ V G+FR DL++RL+VFP+ VPPLR+R Sbjct: 463 IQEGQFERLGNSKPVKADVRVIAATNVSLKQAVKEGKFREDLYYRLNVFPIFVPPLRDRQ 522 Query: 363 DDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATR 422 +D+ LL E+ G + + +++ Y +PGN+REL + + RA++L+ Sbjct: 523 EDIPLLVWAMVEEFSKVFGKTIERIPRKNMEIMERYLWPGNIRELRNLVERAMILSNGGT 582 Query: 423 SGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHH---NW 479 +++ + A P+ EA +R+ I L + Sbjct: 583 LVVDIL------------DGSAAAANEPM-------TMEAAERKHIGFILEKTGWRIRGK 623 Query: 480 AACARMLETDVANLHRLAKRLGLK 503 A +L+ LH K+LG+K Sbjct: 624 GGAAEILDMKPTTLHSRIKKLGVK 647 >UniRef50_UPI00016C3921 transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C3921 Length = 527 Score = 494 bits (1273), Expect = e-138, Method: Composition-based stats. Identities = 157/509 (30%), Positives = 242/509 (47%), Gaps = 23/509 (4%) Query: 8 LANIAIELQRGI-GHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLAKDVLGR 66 LA + +L + + H R L L P + D L Sbjct: 15 LAALLRDLSQALGPHLPRGYLSFALLEPHSHAGKLQFLEPVGGGPAPKSAD--TPTELPA 72 Query: 67 RFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFAGQNLIG 126 + H + + ++ P ++ ++ +PL + +G Sbjct: 73 GESPTAHVW-----DTQEPLWLDVTADGRFPVLRTAFAKQGVRCACF--VPLTTPRRKLG 125 Query: 127 ALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPG------DATPFE 180 A+ P + L A A+ AL ++LE N + Sbjct: 126 AMAFTSYLPVSPAPDDINFTLQVGRLVALAVEGALTRQELERANARLAAEKLYLEEEIRA 185 Query: 181 AVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLV 240 + +++G S + ++ K++E+VA +D VL++GETGTGKELVA+A+H S R+ V Sbjct: 186 DRRMHEVVGDSRTLQEVLKQVEVVAPTDSAVLVTGETGTGKELVARAVHRLSARSERTFV 245 Query: 241 YLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLL 300 LNCAA+P + ESELFGH KGAFTGA+ R G+FE+AD GTLFLDE+G++ LQ KLL Sbjct: 246 KLNCAAIPTGLLESELFGHEKGAFTGAVERRLGRFELADGGTLFLDEVGDIPQELQPKLL 305 Query: 301 RVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRE 360 RVLQ + +R+G + ++V+VR++AAT+R+L + V G+FR+DL++RL VFP+ +P LR+ Sbjct: 306 RVLQEQEFERLGSAKTVKVNVRLVAATHRNLAKLVAEGKFRSDLYYRLHVFPVHLPALRD 365 Query: 361 RGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARA 420 R +D+ L +F R G + A A L+ Y++PGNVREL+H I RAV+L Sbjct: 366 RREDIPSLVRHFVALFAQRFGKRIETIPAEAMAALERYAWPGNVRELQHLIERAVILTTG 425 Query: 421 TR----SGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNH 476 + G+ A+ + P + P A +R+ IR+AL + Sbjct: 426 SELRVPLGELTPTTAEPPSHPRPAVALTIPPTSPAEPPPQFNALRESERDLIRRALDRCG 485 Query: 477 HNWA---ACARMLETDVANLHRLAKRLGL 502 A L L K+LGL Sbjct: 486 WVIGGPNGAAAQLGLKRTTLLSRMKKLGL 514 >UniRef50_B5YHK7 SasR n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YHK7_THEYD Length = 462 Score = 494 bits (1273), Expect = e-138, Method: Composition-based stats. Identities = 134/390 (34%), Positives = 208/390 (53%), Gaps = 14/390 (3%) Query: 117 PLFAGQNLIGALT--LDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPG 174 P G ++ ++ ++ FD + L + + A L +N++ Sbjct: 74 PAVIVITAFGTISSAVNAIKQGAFDYLTK---PLDKEVLLVTIRKAEERMNLIKENLMLR 130 Query: 175 DATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPR 234 +E K +IG S M Q+ ++ ++ VLI GE+GTGKEL+A+AIH SPR Sbjct: 131 KEL-YEKFKMDGIIGKSRKMLQVLDIVKKATPTNATVLIYGESGTGKELIARAIHYNSPR 189 Query: 235 AVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLA 294 P + +NCAA+P+++ ESELFG+ GAFTGA + + G E AD GTLFLDEI E+ L+ Sbjct: 190 KDKPFIAINCAAIPDTLIESELFGYEPGAFTGANTRKIGLIESADKGTLFLDEIAEIPLS 249 Query: 295 LQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLS 354 Q+KLLRVLQ +++++G +VDVR++AATN++L E+V +FR DL++RL V + Sbjct: 250 TQSKLLRVLQDKEVRKIGSKDTNKVDVRIIAATNKNLSEQVEKNKFREDLYYRLKVITVE 309 Query: 355 VPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRA 414 +PPLRER +D+ L +F E+ G + A L +YS+PGN+RELE I RA Sbjct: 310 IPPLRERKEDIPDLVHFFIEKYSKEFGKRVNGIEEKALEALLNYSWPGNIRELESVIERA 369 Query: 415 VVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQ 474 +++ + I + P+ +P N E ++E I++AL + Sbjct: 370 IIICEKDKITFNDIQDELRVITPKNLF----DIDIPDEGINY----EELEKELIKKALIK 421 Query: 475 NHHNWAACARMLETDVANLHRLAKRLGLKD 504 ++ A AR+L K+ GL D Sbjct: 422 SNFVIAKAARLLGMSYDTFWYRLKKFGLSD 451 >UniRef50_C1ZA32 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains n=10 Tax=Bacteria RepID=C1ZA32_PLALI Length = 551 Score = 494 bits (1272), Expect = e-138, Method: Composition-based stats. Identities = 172/442 (38%), Positives = 239/442 (54%), Gaps = 19/442 (4%) Query: 75 RLEAIARAGDVVRFPADSELPDPYDGLIPGQESLK---VHACVGLPLFAGQNLIGALTLD 131 ++ IA G + P E P I E ++ + G PL ++G L + Sbjct: 106 KVGRIAATGLAIEEPEIQE---PLPEWIARPEWVRAEGIRGFAGQPLIHRGKVLGVLGVF 162 Query: 132 GMQPDQFDVFSDEELRLIAALAAGA-------LSNALLIEQLESQNMLPGDATPFEAVKQ 184 Q + LR+IA AA A L ++LE +N + Sbjct: 163 ARQIIGEEC--MGWLRMIADHAAAAIVTARAFAEIESLRKRLELENEYLREEVTGSGA-F 219 Query: 185 TQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNC 244 ++IG SP + + ++I++VA +D +VLI GE+GTGKELVA+ IH S R+ PL+ +NC Sbjct: 220 GELIGQSPALGTVSQQIDLVAPTDSSVLILGESGTGKELVAREIHRRSRRSNRPLIKVNC 279 Query: 245 AALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQ 304 AA+P + ESE FGH KGAFTGA+ +R G+FE+AD GTLFLDE+GE+ L LQAKLLRVLQ Sbjct: 280 AAVPRELYESEFFGHAKGAFTGALRDRVGRFELADGGTLFLDEVGEIPLELQAKLLRVLQ 339 Query: 305 YGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDD 364 G+++RVG++R +V+VR++AATNRDLR E AGRFR DL++RLSVFP+ VPPLR R +D Sbjct: 340 EGELERVGEERTRKVNVRIIAATNRDLRMEAEAGRFRQDLYYRLSVFPVEVPPLRRRKED 399 Query: 365 VILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSG 424 V LLA +F + G + +L+ LQ Y +PGNVREL+H I RAV+ + R Sbjct: 400 VPLLASHFLRIAARKVGRPQPLLTLAIVQKLQQYDWPGNVRELQHVIERAVITSTNERLL 459 Query: 425 DEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWA---A 481 E+ V P+ A + + E I AL H + Sbjct: 460 IELPQTTGSKPTRSVKSPSNSTATSQEIPIRTDLEIRQMEAENILAALQATHGKISGPGG 519 Query: 482 CARMLETDVANLHRLAKRLGLK 503 A +L L K LG+K Sbjct: 520 AAALLGLKPTTLASRIKALGIK 541 >UniRef50_Q027A1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q027A1_SOLUE Length = 450 Score = 494 bits (1272), Expect = e-138, Method: Composition-based stats. Identities = 147/426 (34%), Positives = 225/426 (52%), Gaps = 16/426 (3%) Query: 78 AIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQ 137 I D+V D +LP+ DG + ++ V + + + ++ M+ Sbjct: 40 KIVDRADMVL--TDLKLPN-MDGQEFLSLIRRQNSHVPVVMMTAFGNVET-AVEAMKAGA 95 Query: 138 FDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQL 197 D + AL + L +N A + ++G SP M ++ Sbjct: 96 TDFLLK---PFSLDHLMQVVDKALEVRALREENREL-KAALGRRYEFDNIVGRSPAMQEI 151 Query: 198 KKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELF 257 IE V S VL++GE+G GK+L+A+AIH SPR PLV +NC A+PE++ ESELF Sbjct: 152 FAAIERVGPSRATVLLTGESGVGKDLIARAIHFHSPRKDRPLVKINCTAIPENLMESELF 211 Query: 258 GHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCL 317 G+ KGAFTGA + + GKFE AD GT+FLDEIG++ A+Q KLLRVLQ + +R+G + Sbjct: 212 GYEKGAFTGAQTTKPGKFEQADTGTVFLDEIGDVPAAIQVKLLRVLQEREFERLGSNVTR 271 Query: 318 RVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCR 377 +DVR++AATN+DLR + G FR DL++RL+V PL++PPLRER D+ LA +F + Sbjct: 272 HIDVRLVAATNQDLRAALEQGTFREDLYYRLNVVPLNIPPLRERKVDIPFLANHFVHKLA 331 Query: 378 LRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFP 437 G ++ L Y +PGNVRELE+ I R++V+A T+ L+A Sbjct: 332 PDTGCQVESITDAGMEKLMAYHWPGNVRELENVIERSLVMATGTQ------LDADDIKLE 385 Query: 438 EVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLA 497 P + + + L + + +++E IR+AL + N + AR+L L Sbjct: 386 SAPRPRAQGNDNHFLPEGL--SLDQYEQEIIREALRRADGNKSQAARLLGLTRNALRYRL 443 Query: 498 KRLGLK 503 ++GL+ Sbjct: 444 TQMGLE 449 >UniRef50_A4VJ57 Nitrogen fixation positive regulatory protein n=10 Tax=cellular organisms RepID=A4VJ57_PSEU5 Length = 521 Score = 493 bits (1271), Expect = e-138, Method: Composition-based stats. Identities = 171/515 (33%), Positives = 250/515 (48%), Gaps = 29/515 (5%) Query: 1 MSFSVDVLANIAIELQRGIGHQDRFQRLITTLRQVLEC--DASALLRYDSRQFIPLAIDG 58 + + LA IA L RG ++ ++ L + L ++ A+ Sbjct: 18 LDAQLQALAQIARILNRGRPIEELLAEILAVLHEDLGLLHGLVSICNPKDGSLQVGAVHS 77 Query: 59 LAKDV----LGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACV 114 ++ V R+ + G I + G+ V P D L L + Sbjct: 78 DSETVVRACESTRYRI-GEGVFGNILKHGNSVVLGRIDAEPRFLDRLALYDMDLP---FI 133 Query: 115 GLPLFA-GQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLES----- 168 +P+ A IG L + D E RL+ +A L+ LE Sbjct: 134 AVPIKAVDGTTIGVLA--AQPDRRADELMPERTRLMEIVARLLAQTVRLVVNLEDGQEVV 191 Query: 169 -QNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKA 227 + + + ++G + M ++ ++ VA + VLI GE+GTGKEL+A A Sbjct: 192 DERDELRREVRAKYGFENMVVGHTASMRRVFDQVRRVAKWNSTVLILGESGTGKELIASA 251 Query: 228 IHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDE 287 IH SPRA PLV LNCAALPE++ ESELFGH KGAFTGA+ R G+FE AD GTLFLDE Sbjct: 252 IHYNSPRAHQPLVRLNCAALPETLLESELFGHEKGAFTGAVKQRKGRFEQADGGTLFLDE 311 Query: 288 IGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHR 347 IGE+S QAKLLRVLQ G+++RVG + ++V+VR++AATNRDL EV G+FR DL++R Sbjct: 312 IGEISPMFQAKLLRVLQEGELERVGGSQTVKVNVRIVAATNRDLEHEVEQGKFREDLYYR 371 Query: 348 LSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVREL 407 L+V + VPPLRER D+ LA + ++ +QG L+ A LL + +PGNVREL Sbjct: 372 LNVMAIRVPPLRERSADIPELAEFLLDKIARQQGRKLK-LTDSALRLLMSHRWPGNVREL 430 Query: 408 EHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRET 467 E+ + R+ +++ +V+ P V V + +L + RE Sbjct: 431 ENCLERSAIMSEDGTISRDVV---SLTGLDHDATPLAPVPEVDLADDSLDD------RER 481 Query: 468 IRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 + AL Q A AR+L + + L + Sbjct: 482 VIAALEQAGWVQAKAARLLGMTPRQIAYRVQTLNI 516 >UniRef50_P03027 Nif-specific regulatory protein n=14 Tax=Proteobacteria RepID=NIFA_KLEPN Length = 524 Score = 493 bits (1271), Expect = e-138, Method: Composition-based stats. Identities = 178/511 (34%), Positives = 253/511 (49%), Gaps = 24/511 (4%) Query: 1 MSFSVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQ--FIPLAIDG 58 +S + I++ L R Q +++ L + YDS+Q A+ Sbjct: 16 LSQQFTAMQRISVVLSRATEASKTLQEVLSVLHNDAFMQHGMICLYDSQQEILSIEALQQ 75 Query: 59 LAKDVL---GRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVG 115 L + G + + G + P ++ D L L + Sbjct: 76 TEDQTLPGSTQIRYRPGEGLVGTVLAQGQSLVLPRVADDQRFLDRLSLYDYDLP---FIA 132 Query: 116 LPLFA-GQNLIGALTLDGMQPDQFDVFS-DEELRLIAALAAGALS------NALLIEQLE 167 +PL IG L M + + + L +A L A + +A Q Sbjct: 133 VPLMGPHSRPIGVLAAHAMARQEERLPACTRFLETVANLIAQTIRLMILPTSAAQAPQQS 192 Query: 168 SQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKA 227 + P TP M+G SP M Q+ I V+ D VL+ GE+GTGKEL+A A Sbjct: 193 PRIERPRACTPSRGFGLENMVGKSPAMRQIMDIIRQVSRWDTTVLVRGESGTGKELIANA 252 Query: 228 IHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDE 287 IH SPRA V NCAALP+++ ESELFGH KGAFTGA+ R G+FE+AD GTLFLDE Sbjct: 253 IHHNSPRAAAAFVKFNCAALPDNLLESELFGHEKGAFTGAVRQRKGRFELADGGTLFLDE 312 Query: 288 IGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHR 347 IGE S + QAKLLR+LQ G+++RVG D LRV+VR++AATNR L EEV G FR DL++R Sbjct: 313 IGESSASFQAKLLRILQEGEMERVGGDETLRVNVRIIAATNRHLEEEVRLGHFREDLYYR 372 Query: 348 LSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVREL 407 L+V P+++PPLRER +D+ LA + + QG + + +S GA LL YS+PGNVREL Sbjct: 373 LNVMPIALPPLRERQEDIAELAHFLVRKIAHSQGRT-LRISDGAIRLLMEYSWPGNVREL 431 Query: 408 EHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRET 467 E+ + R+ VL+ + +VIL H P L + A + +L +R+ Sbjct: 432 ENCLERSAVLSESGLIDRDVIL-FNHRDNPPKALASSGPAEDGWLDNSLD------ERQR 484 Query: 468 IRQALAQNHHNWAACARMLETDVANLHRLAK 498 + AL + A AR+L + + Sbjct: 485 LIAALEKAGWVQAKAARLLGMTPRQVAYRIQ 515 >UniRef50_B5YI42 AdnA n=3 Tax=Bacteria RepID=B5YI42_THEYD Length = 324 Score = 493 bits (1271), Expect = e-138, Method: Composition-based stats. Identities = 132/319 (41%), Positives = 190/319 (59%), Gaps = 2/319 (0%) Query: 187 MIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAA 246 +IG S + ++ I+ ++ +D LI GE+GTGKELVAK IH+ S RA P + +NCAA Sbjct: 2 IIGQSIQIQRILTFIDKLSKTDTTALIMGESGTGKELVAKMIHQKSSRAEKPFIPVNCAA 61 Query: 247 LPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYG 306 +P + ESELFGH KGAFTGA + R G+FE+A+ GT+FLDEIG++ L LQ K+LRV+Q Sbjct: 62 IPSELLESELFGHEKGAFTGAQNCRYGRFELANEGTIFLDEIGDMPLHLQVKILRVIQEK 121 Query: 307 DIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVI 366 +R+G R ++V+VR++AATN+DL EV GRFR DLF RL+V P+ +PPLRER +D+ Sbjct: 122 TFERIGGTRPIQVNVRIIAATNKDLENEVKEGRFREDLFWRLNVVPVVIPPLRERKEDIP 181 Query: 367 LLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDE 426 LL YF + + G S + + + +Y++PGNVRELE+ I R VL + Sbjct: 182 LLCEYFINKFSHKFGYS-LQIKPEVMQIFLNYTWPGNVRELENLIERLYVLNEGGNINIK 240 Query: 427 VILEAQHFAFPEVTLP-TPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARM 485 I E F P+ +L E + ++++ I AL + + A+ Sbjct: 241 DIPERIRFGENSFQKELIPDDLNPFSSGIDLNEVLKEYEKKLILHALNLHGWIKSRAAKY 300 Query: 486 LETDVANLHRLAKRLGLKD 504 L + L KRL +KD Sbjct: 301 LNINRTTLIEKMKRLNIKD 319 >UniRef50_B3U4Q6 Nif-specific regulatory protein n=3 Tax=Bacteria RepID=B3U4Q6_9BACT Length = 517 Score = 493 bits (1271), Expect = e-138, Method: Composition-based stats. Identities = 156/516 (30%), Positives = 254/516 (49%), Gaps = 30/516 (5%) Query: 2 SFSVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSR----QFIPLAID 57 + + + L + L ++ + +R+V+ D + + Y+S+ +F + + Sbjct: 5 TLNFETLLEVTNALNSQRDIDSLWRVIADQIRKVIPWDRAGITLYESQTDSFRFYAVITN 64 Query: 58 GLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLP 117 + + + + + + QE L + +P Sbjct: 65 MATPALAHDSVIPREGSAVGWVHDNRRLHIREDLQKEQVFLEDRYYVQEGLGR--MINMP 122 Query: 118 LFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQ-------LESQN 170 L + +G L + +Q D + L+ +A A A+ + L EQ L +N Sbjct: 123 LLVRDHCLGTLNIGSVQTGHLDQDDCKFLQQVATQIAYAIDHVLAYEQIQQLSDRLRREN 182 Query: 171 MLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHE 230 + + ++G S ++ ++ VA +D VL+ GETGTGKE++A+A+H+ Sbjct: 183 EYLAEEVKA-SRNLRLVVGTSSSFRKVVDLLKAVAPTDTTVLLLGETGTGKEVLAQALHD 241 Query: 231 ASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGE 290 S R P + +NCAALP + ESELFGH +GAFTGA R+G+FE+A GTLFLDEIGE Sbjct: 242 LSLRCHKPFIRVNCAALPSGLIESELFGHERGAFTGAQLRRAGRFELAHTGTLFLDEIGE 301 Query: 291 LSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSV 350 + L QAKLLRVLQ G + R+G + + VDVR++AATN DL+ V G FRADLF+RL + Sbjct: 302 MPLETQAKLLRVLQDGMVDRIGGTQPVAVDVRLVAATNADLQAAVRQGTFRADLFYRLHI 361 Query: 351 FPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHA 410 FP+++PPLR+R +D+ LLA +F + + + + L Y++PGNVREL++ Sbjct: 362 FPIALPPLRDRREDIHLLAQHFLALIGGKLKRAHLAFDPQSMARLLTYNWPGNVRELQNV 421 Query: 411 IHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQ 470 I RAV+L+ +++ + +L P V AV +L + +R I + Sbjct: 422 IERAVILSGSSQVTVDEML-------------LPVVQAVHSPSSSLPVSLGDLERYHIIE 468 Query: 471 ALAQNHHNW---AACARMLETDVANLHRLAKRLGLK 503 L Q A +L + L ++LGL+ Sbjct: 469 VLEQTKWRIYGEQGAAHLLGLNPETLRSRLRKLGLR 504 >UniRef50_D0LWE6 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LWE6_HALO1 Length = 684 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 149/400 (37%), Positives = 218/400 (54%), Gaps = 12/400 (3%) Query: 109 KVHACVGLPLFAGQNLIGALTLD-GMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLE 167 K+ + V +PL+ G + G + D E L+ A AA A+ NA L+ +L+ Sbjct: 291 KILSMVAVPLWRGDEITGLIQADNRASAGMLSERDLEVALLLGAQAALAIDNAALVSRLK 350 Query: 168 -SQNMLPGDATPF----EAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKE 222 ++ L G+ T E ++ +IG S M + ++ V + V I GETGTGKE Sbjct: 351 VAEERLRGENTYLKRREENLRFENIIGESSAMQAIFDQLRKVVDTRATVCIEGETGTGKE 410 Query: 223 LVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGT 282 L+A AIH S R V NCAALPE++ ESELFGH KGAFT A +++ G FE+AD GT Sbjct: 411 LIATAIHYESNRRDKMFVAQNCAALPENLLESELFGHKKGAFTSADTDKKGLFEIADGGT 470 Query: 283 LFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRA 342 LFLDEIGE+ L+LQAK+LRVLQ G I+ +G R +VD R++ ATNRDL EV G FR Sbjct: 471 LFLDEIGEMPLSLQAKVLRVLQEGTIRPLGSTRERQVDARIICATNRDLAAEVEKGSFRQ 530 Query: 343 DLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPG 402 DL++RL VFP+ +PPLRER +D+ L +F ++ + S +++ Y +PG Sbjct: 531 DLYYRLVVFPIRLPPLRERREDIPPLCEHFLKRYSREFRQEVLGFSQECLDVMSTYQWPG 590 Query: 403 NVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEA 462 N+RELE+ + R V+ A + L P + +A + K L+ E Sbjct: 591 NIRELENEVQRLVIQTDAGSWIEVSELS------PRLRKVEGTLARIAPKKGTLKAMMEQ 644 Query: 463 FQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 +R + +AL ++ +N A+ L LH+ + + Sbjct: 645 VERWLLAEALREHDNNKTRTAQSLGITREGLHKKLSKYSM 684 >UniRef50_Q1PYK0 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYK0_9BACT Length = 456 Score = 492 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 141/414 (34%), Positives = 229/414 (55%), Gaps = 19/414 (4%) Query: 91 DSELPDPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDV----FSDEEL 146 D ++P DG+ ++ + + + L I + ++ M+ +D FS +++ Sbjct: 54 DMKMP-GMDGMEALEKVKGISSETVVILMTAYGTIES-AVEAMRKGAYDYIIKPFSPDQI 111 Query: 147 RLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAA 206 L+ +S ++L ++N A+ + + + + M+Q+ ++++ +A Sbjct: 112 ELL-------ISRVNERQKLIAENKYWRSASNVDEKSEP-VYSKNSKMSQIYEQLKKIAQ 163 Query: 207 SDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTG 266 S +VLI GE+GTGKELVA+AIH SPR P + +NCAAL ES+ ESELFGH +GA+TG Sbjct: 164 SKASVLIQGESGTGKELVARAIHYFSPRCEKPFIRVNCAALAESLLESELFGHERGAYTG 223 Query: 267 AISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAA 326 A++ R G+FE+A+ GTL LDE+ E+S +QAKLLRVL+ + +RVG ++ +++DVR++A Sbjct: 224 AVAKRIGRFELANEGTLLLDEVSEISPNIQAKLLRVLEEEEFERVGGEKTIKIDVRIVAT 283 Query: 327 TNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVV 386 TNRDL +E+ G FR DLF+RL+V P+ +PPLRER +D+ LLA + E+ S Sbjct: 284 TNRDLAKEIQKGTFREDLFYRLNVVPIHLPPLRERREDIPLLANTYLEKYSSENNSSVKS 343 Query: 387 LSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEV 446 + A + L Y++PGNVREL++ + RAVV+ + G E E T+ V Sbjct: 344 IEKRAMDYLSQYNWPGNVRELKNIMQRAVVMGSSEELGLENFTSLIDIKKSEHTMCNDSV 403 Query: 447 AAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRL 500 ++ E ++E I L + N A +L+ L + Sbjct: 404 NIKKNG-----QSIEDAEKELIFTTLEKTGGNKTKAAGLLKITTRTLRNKLNKY 452 >UniRef50_Q1Q6P9 Similar to Sigma-54 dependent transcriptional regulator n=2 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q6P9_9BACT Length = 512 Score = 492 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 150/394 (38%), Positives = 225/394 (57%), Gaps = 15/394 (3%) Query: 115 GLPLFAGQNLI-GALTLDGMQPDQ-FDVFSDEELRLIAALAAGALSNALLIEQLESQNML 172 +P+ G ++ G L++ + + +E + + L ++LE +N Sbjct: 124 CIPILDGGGVLQGVLSISKDVTKRVYKEIQYQESQKML---------KALFQELEVKNTT 174 Query: 173 PG--DATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHE 230 + E +IG S M + IE V+ +D VLI+GETGTGKELVA+AIH Sbjct: 175 IRSLQTSLRERYSFHSLIGKSYLMQNIYDLIEKVSQTDSTVLITGETGTGKELVARAIHY 234 Query: 231 ASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGE 290 S R LV +NCAALPE++ ESELFGHVKG+FTGAI ++ GKFE+AD GT+FLDEIGE Sbjct: 235 NSHRKDYNLVAVNCAALPETLLESELFGHVKGSFTGAIRDKKGKFELADKGTIFLDEIGE 294 Query: 291 LSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSV 350 LS+ Q KLLRVLQ I+RVGD++ ++VD+R++AATN+D+ E + G FR DLF+RL++ Sbjct: 295 LSIPTQVKLLRVLQERYIERVGDEKTIKVDIRIIAATNQDILELIEKGTFRKDLFYRLNI 354 Query: 351 FPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHA 410 + +P L+ER DD+ LL +F E+ +R + +S A L YS+PGN+RELE Sbjct: 355 ISIRLPSLKERTDDIPLLVNHFIEKFNIRFKKNINGISPNALRKLLAYSWPGNIRELEGV 414 Query: 411 IHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVK-QNLREATEAFQRETIR 469 I +AV+L + + + + L H A + LP P A + ++L++ + +RE Sbjct: 415 IEKAVLL-EESETIENIELPTDHSATTNLCLPKPLNAGPDISSYEDLQKRLDMLEREYFV 473 Query: 470 QALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 ++H + A + + K+ LK Sbjct: 474 SVFQKHHGRIGSIAACTGLNRRTILNKMKKFSLK 507 >UniRef50_Q21UU9 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Proteobacteria RepID=Q21UU9_RHOFD Length = 474 Score = 492 bits (1267), Expect = e-137, Method: Composition-based stats. Identities = 151/471 (32%), Positives = 237/471 (50%), Gaps = 16/471 (3%) Query: 38 CDASALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDP 97 A L+ D I + L D+ A G L+ + + D +P Sbjct: 1 MSARILVVDDEEIVIRSCVRILNDDLYTVDSAPGGFEALKKVDETAYDILI-LDVMMPK- 58 Query: 98 YDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDV----FSDEELRLIAALA 153 DGL Q + H + + + G + I + M+ FD F +EL+L+ Sbjct: 59 MDGLEVLQHVKERHPEIDVIMMTGLSEIQT-AVKAMKLGAFDYLSKPFDPDELKLV---- 113 Query: 154 AGALSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLI 213 ++ AL QL +N + + +IG SP M + I A ++ VLI Sbjct: 114 ---VNRALERRQLMQENRKLKTEVSSK-YRFENIIGSSPPMQAVFGLIAKCAPTNSTVLI 169 Query: 214 SGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSG 273 +GE+GTGKE++A+AIH S R P V ++C L E++ ESELFGH KG+FTGA++N+ G Sbjct: 170 TGESGTGKEMIARAIHYNSLRKDQPFVTVDCNTLSENLLESELFGHTKGSFTGAVANKRG 229 Query: 274 KFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLRE 333 F++A+NGTLFLDE G + L+ QAKLLRV+Q + + VG + +VR++ ATN+DL+ Sbjct: 230 MFDVANNGTLFLDEFGNIPLSTQAKLLRVIQEREFRPVGTTTNQKTNVRLITATNKDLKA 289 Query: 334 EVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARN 393 V G FR DL++R++VFP+ P LRER DD+ LA +F + G +S GA + Sbjct: 290 MVAEGTFREDLYYRINVFPIHSPALRERRDDIPALAFHFLKIFCSELGKPVSEISEGAMS 349 Query: 394 LLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFP-EVTLPTPEVAAVPVV 452 LL +Y +PGNVRELE+ + RAV+L+ + + ++ +P + Sbjct: 350 LLMNYGWPGNVRELENTMQRAVILSSDGIIRQAHLASIIDNSPRLDLDVPRTSDELKRIK 409 Query: 453 KQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 K ++ E ++ +++ L +N N A N L K+ ++ Sbjct: 410 KIAREKSVEEVEKLFVQETLKRNASNVTRSAEETGMQRTNFQALMKKYNIR 460 >UniRef50_Q1D552 Sigma-54 dependent DNA-binding reponse regulator Nla6 n=8 Tax=Cystobacterineae RepID=Q1D552_MYXXD Length = 484 Score = 492 bits (1267), Expect = e-137, Method: Composition-based stats. Identities = 149/433 (34%), Positives = 231/433 (53%), Gaps = 18/433 (4%) Query: 68 FALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFAGQNLIGA 127 A +GH L A +D +P+ + ++ C + L + A Sbjct: 32 IAFDGHDALRK-ANEFRPDVVLSDLAMPETDGLWLLRNLKEELPDCPVVFLTGRGTIDAA 90 Query: 128 LTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQTQM 187 ++ ++ +D L A + AL ++ + + + + + Sbjct: 91 --VESIREGAYDFIVK---PLDTARLKVCIDRALEKKETMREVQTLR--RRLKQLGSSDL 143 Query: 188 IGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAAL 247 I S GM ++ + +E VA S +V ISGE+GTGKE+V++A+H S R P + +NCA++ Sbjct: 144 IAQSVGMRKVIELVEKVAPSKASVSISGESGTGKEVVSRAVHNLSLRRDKPFIAINCASI 203 Query: 248 PESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGD 307 P ++ ESELFGH +GAFTGA R G FEMA GTLFLDE+GE+ + LQAKLLRVL+ G Sbjct: 204 PATLIESELFGHERGAFTGADQRRPGVFEMAHGGTLFLDELGEIPIELQAKLLRVLEEGK 263 Query: 308 IQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVIL 367 ++R+G + VDVRVL ATNRDL++E+ GRFR DL+ RL+VF + +PPLRER DDV + Sbjct: 264 LRRLGGKVEIEVDVRVLCATNRDLKQEIKNGRFREDLYFRLNVFQIHLPPLRERRDDVPI 323 Query: 368 LAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEV 427 L +F ++ R G + A +L++Y +PGN+REL +A+ RAV+L Sbjct: 324 LVQHFVDKFRGDSGKRVSGVHPEAMEVLKNYDWPGNIRELRNAVERAVILCDGE------ 377 Query: 428 ILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLE 487 ++ +H P++ +PE + + +A +RE I +L +N +N A A +L Sbjct: 378 LITREHLP-PDMAGKSPERH---TFRLPFGLSLDAVEREYILGSLQRNGNNKARTAEVLG 433 Query: 488 TDVANLHRLAKRL 500 L+ R Sbjct: 434 VSEKTLYNKLNRY 446 >UniRef50_A6M003 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Bacteria RepID=A6M003_CLOB8 Length = 472 Score = 491 bits (1266), Expect = e-137, Method: Composition-based stats. Identities = 139/419 (33%), Positives = 226/419 (53%), Gaps = 19/419 (4%) Query: 91 DSELPDPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDV----FSDEEL 146 D +P+ DGL E K+ + + L ++ M+ +D F+ +E+ Sbjct: 65 DIRMPE-VDGLQAFYEIHKIKPNLPIILMTAFGSSET-AVNAMKHGAYDYILKPFNLDEV 122 Query: 147 RLIAALAAGALSNALLIEQLESQNMLPGDATP---FEAVKQTQMIGLSPGMTQLKKEIEI 203 ++I +S A+ ++QL + + A+ +++G S + ++ K I Sbjct: 123 KII-------VSRAIRMQQLTKEVVYLTQEVQEMGMTAMTPGKIVGESSKIQEVYKIIGR 175 Query: 204 VAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGA 263 VA S VL++GE+GTGK +VAKAIH AS R P + +NC ++PE + ESE+FGH KGA Sbjct: 176 VANSKATVLLTGESGTGKGMVAKAIHYASDRREKPFIQVNCGSIPEGLLESEIFGHEKGA 235 Query: 264 FTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRV 323 FT A + GKFE+A+ GTLFLDEI E+S LQ KLLRVLQ + +RVG + +VR+ Sbjct: 236 FTSAFFQKPGKFELAEGGTLFLDEIAEMSPNLQVKLLRVLQEKEFERVGGTKTFHTNVRI 295 Query: 324 LAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLS 383 +AATNRDL +E+ FR DL++RL+V + +PPL ERG+D++LLA YF ++ + G + Sbjct: 296 IAATNRDLNKEISEKSFRKDLYYRLNVVSICLPPLCERGEDIVLLADYFLKRFSVEVGRN 355 Query: 384 RVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPT 443 + + ++ ++YS+PGN+RELE+A+ A++++ E + +V Sbjct: 356 GMFFAPEVLDIFRNYSWPGNIRELENAVEHAIIMSNTRVILPENL--PLSIKVEDVEADG 413 Query: 444 PEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 + K LRE ++ I +A+ + N A++L+ L + Sbjct: 414 TIILGDDSFKP-LREVLLEVEKRHISEAIERTGGNRTQAAKLLQISRRALLYKINENNI 471 >UniRef50_Q1D1F9 DNA-binding reponse regulator HsfA n=3 Tax=Myxococcus RepID=Q1D1F9_MYXXD Length = 485 Score = 491 bits (1266), Expect = e-137, Method: Composition-based stats. Identities = 148/375 (39%), Positives = 211/375 (56%), Gaps = 9/375 (2%) Query: 129 TLDGMQPDQFDVFSD--EELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQTQ 186 ++ ++ +D + E + ++ A A L ++ + + FE Sbjct: 93 AVEAVKAGAYDYLTKPFENIDEVSLTVAKAAERKALKDRTRALEEALTVRSQFE-----D 147 Query: 187 MIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAA 246 +IG S M + K +E V+ S VLI GE+GTGKELVA+AIH S R P V +NC+A Sbjct: 148 LIGQSTQMRSVFKLVETVSHSTATVLIQGESGTGKELVARAIHYRSARKDKPFVAVNCSA 207 Query: 247 LPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYG 306 L E++ ESELFGHVKG+FTGA N+ G FE AD GT+FLDEIG++ A Q +LLRVLQ G Sbjct: 208 LTETLLESELFGHVKGSFTGATGNKKGLFEAADGGTIFLDEIGDVPPATQVRLLRVLQEG 267 Query: 307 DIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVI 366 +++RVG + ++VDVRV+AAT+ DL G+FR DLF+RL+V + +PPLR+R +DV Sbjct: 268 EVKRVGANEPVKVDVRVIAATHVDLSRAKEQGKFREDLFYRLNVITIDLPPLRDRPEDVP 327 Query: 367 LLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDE 426 LLA +F + + +S A L + GNVRELE+ I RAVVL E Sbjct: 328 LLAHHFLKLYASKADKKVTGISPRAMEALTCNRWTGNVRELENVIERAVVLTGNEVIDVE 387 Query: 427 VILEA-QHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARM 485 + Q P+ T+ +A +P Q R A AF+R + L +N+ N ++ AR Sbjct: 388 DLPPGFQSAPQPDSTVEVFSLAHLP-YAQAKRLAMRAFERRYLSALLEKNNQNVSSAARA 446 Query: 486 LETDVANLHRLAKRL 500 D +N RL K+ Sbjct: 447 AGVDRSNFRRLLKQY 461 >UniRef50_Q1PV55 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PV55_9BACT Length = 448 Score = 491 bits (1265), Expect = e-137, Method: Composition-based stats. Identities = 151/431 (35%), Positives = 237/431 (54%), Gaps = 24/431 (5%) Query: 76 LEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQP 135 +E I++ + D +P+ DG+ + ++++ + + + + + ++ M+ Sbjct: 38 IERISKDPEYAIVLTDFVMPE-MDGIQLLSKIKQINSAIDVIVMTSYGTVSS-AVEAMKH 95 Query: 136 DQFDV----FSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLS 191 D F +EL L+ + L +++LE + E +IG S Sbjct: 96 GASDYITKPFKRDELVLV-------IEKILQMQRLEGEVDRLRSELG-EKYTFGNIIGES 147 Query: 192 PGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESV 251 P + ++ I V+ ++ N+LI GETGTGKELVAKAIH S R + V ++C++L E++ Sbjct: 148 PKIKKIYDIISHVSGTEANILIQGETGTGKELVAKAIHYNSARNNHRFVKVDCSSLTETL 207 Query: 252 AESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRV 311 ESELFGH KGAFTGA +R G+F AD+GT+FLDEIG +SLA+QAKLLRVLQ + + V Sbjct: 208 LESELFGHEKGAFTGATKDRVGRFRKADHGTIFLDEIGNISLAVQAKLLRVLQDSEFEAV 267 Query: 312 GDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGY 371 G D ++VDVR++AATN DL V G FR+DLF+RL+V + +PPLRER +D+ LLA + Sbjct: 268 GSDESIKVDVRIIAATNADLEGCVEKGLFRSDLFYRLNVIRIFLPPLRERTEDIPLLAAH 327 Query: 372 FCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEA 431 F + + S N+L Y++PGN+RELE+ I RAV+L + R E + Sbjct: 328 FLAIHNKKNRKTVEGFSRDTLNILTSYAWPGNIRELENVIERAVILCKKNRITPEDVP-- 385 Query: 432 QHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVA 491 + E P ++ P L+E E +R+ I L N + A++L+ A Sbjct: 386 ---LYQEKMGTRPGLSGKP-----LQELLEQTERQIIINTLEANDADKEKTAKILKISRA 437 Query: 492 NLHRLAKRLGL 502 +L+ + + Sbjct: 438 SLYNKLNKYKI 448 >UniRef50_C6VTN7 Sigma 54 interacting domain protein n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VTN7_DYAFD Length = 479 Score = 491 bits (1264), Expect = e-137, Method: Composition-based stats. Identities = 159/428 (37%), Positives = 227/428 (53%), Gaps = 32/428 (7%) Query: 92 SELPDPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAA 151 S LP D +P E+ + H + + L G L + +++ Sbjct: 57 SRLPLSADAHVPAGEASE-HEVLAIALHDESGTWGHLRFYSDREAISPAIPMALPDQVSS 115 Query: 152 LAAGALSNALLIE--------------QLESQNMLPGDATPFEAVKQTQMIGLSPGMTQL 197 + + A++N + E QLE QN + E +IG S M ++ Sbjct: 116 VVSLAIANIVSTEKLSRQLEEIKHYQSQLEEQNAYLLEEAK-EGFSYDDIIGSSGPMQRV 174 Query: 198 KKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELF 257 + + V+ ++ VL+ GETGTGKELVA+AIH +S R +V +NCAA+P + ESELF Sbjct: 175 FQLLSQVSFTNSTVLLLGETGTGKELVARAIHNSSARKDRLMVRVNCAAIPAHLIESELF 234 Query: 258 GHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCL 317 GH KG+FTGA R GKFE+A+ TLFLDEIGE+ L +QAKLLR +Q +I+R+G + Sbjct: 235 GHEKGSFTGAFERRIGKFELANQATLFLDEIGEMPLDMQAKLLRAIQEREIERIGGKGVI 294 Query: 318 RVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCR 377 +VDVR++AATNR+L EEV GRFR+DLF+RL VFP+++PPLRER D+ LLA F + Sbjct: 295 KVDVRIIAATNRNLLEEVQQGRFRSDLFYRLHVFPITLPPLRERTGDISLLAKQFVGRFA 354 Query: 378 LRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFP 437 G S +S+ L Y +PGNVRELEH + R V+LAR Sbjct: 355 KNNGKSISRISSNVMKALLAYPWPGNVRELEHQMERCVLLAR-------------DHVIR 401 Query: 438 EVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNW---AACARMLETDVANLH 494 +V LP+P + + E +RE I + L Q + A++L V L+ Sbjct: 402 DVLLPSPTQSGHAPAAGIYTKTHEENEREYIIRVLNQCNGKIYGPGGAAQLLNLKVGTLN 461 Query: 495 RLAKRLGL 502 K+LG+ Sbjct: 462 SKIKKLGI 469 >UniRef50_A5G4X7 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Geobacter uraniireducens Rf4 RepID=A5G4X7_GEOUR Length = 726 Score = 491 bits (1264), Expect = e-137, Method: Composition-based stats. Identities = 159/496 (32%), Positives = 253/496 (51%), Gaps = 42/496 (8%) Query: 29 ITTLRQVLECDASALLRY---DSRQFIPLAIDGLAKDVLGRRFALE-GHPRLEAIARAGD 84 + +R++ + D L+ + A G + + + P + G+ Sbjct: 240 LEQVREMFQFDGFGLISLSPDKGEAIVSHACYGEGIERSPEKIDISLRFPWTKERLLRGE 299 Query: 85 VVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQ-FDVFSD 143 ++ F + ++P+ +++KV A +P+ ++ + ++ + D Sbjct: 300 MIHFNSREDVPEDAAVDRQSWQAMKVKANFSIPILVAGSVAYIIAAHDVRATRCLDEGLL 359 Query: 144 EELRLIAALAAGAL--------------SNALLIEQLESQNMLPGDATPFEAVKQTQMIG 189 LRL+ + A AL L E+L+ + + Q+IG Sbjct: 360 LRLRLLGEIFANALFRCKSEAEFRNSCTEIQRLKEKLQLEAEYLQTEIICSHCNE-QIIG 418 Query: 190 LSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPE 249 S + ++ + +E VA++D VLI GETGTGKELVA+AI E S R P+V +NCA+LP Sbjct: 419 QSAALDKVLRLVEQVASTDSTVLICGETGTGKELVARAIQELSLRRNKPIVKVNCASLPA 478 Query: 250 SVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQ 309 ++ ESELFG KGA+TGA++ ++G+FE+AD T+FLDEI E+S LQAKLLRVLQ G + Sbjct: 479 ALVESELFGREKGAYTGALTRQAGRFEVADGATIFLDEISEMSPELQAKLLRVLQEGQFE 538 Query: 310 RVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLA 369 R+G + + VDVRV+AATNR+L EEV G FR DL++RL+VF + VPPLRER +D+ LLA Sbjct: 539 RLGSTKTIHVDVRVIAATNRNLAEEVKKGTFREDLYYRLNVFQIVVPPLRERAEDIPLLA 598 Query: 370 GYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVIL 429 F + + G ++ N LQ+Y +PGNVREL + I V+++ Sbjct: 599 WAFVHEFNEKMGKKINRIAKSDMNALQNYHWPGNVRELRNVIEYGVIVSTGN-------- 650 Query: 430 EAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWA---ACARML 486 H PE + E A P++ + +R+ I L + AR+L Sbjct: 651 -GLHVRLPEGSG---EEIARPLL-------MDEVERQHITGVLQRTGWRIKGENGAARIL 699 Query: 487 ETDVANLHRLAKRLGL 502 + + L+ ++LG+ Sbjct: 700 GMNPSTLYSRMQKLGI 715 >UniRef50_Q1JZC1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JZC1_DESAC Length = 455 Score = 490 bits (1263), Expect = e-137, Method: Composition-based stats. Identities = 146/378 (38%), Positives = 213/378 (56%), Gaps = 15/378 (3%) Query: 129 TLDGMQPDQFDV----FSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQ 184 L M+ FD F +EE+ L + AL +L+++N L E + Sbjct: 88 ALQAMKIGAFDYLLKPFDNEEMLL-------TVDKALDYSKLQNENWLLRRE--LEQNRD 138 Query: 185 TQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNC 244 ++G SP M L+ +I VA + ++LI+GE+GTGKELVA+A+H SPR+ LV +NC Sbjct: 139 RTLVGNSPAMESLRNQIAQVAPAKTSILITGESGTGKELVAQALHRLSPRSNKALVSINC 198 Query: 245 AALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQ 304 AA E++ ESELFGH +GAFTGA+ + G E++D GTLFLDEIGE L LQ KLLRVLQ Sbjct: 199 AAFAENLLESELFGHERGAFTGALERKKGLMEVSDGGTLFLDEIGEFPLNLQPKLLRVLQ 258 Query: 305 YGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDD 364 +RVG + D+R++AAT+R+L + + G FR DL++RL+V L +PPLR R +D Sbjct: 259 EKTFRRVGGTAEISSDIRIIAATHRNLEQMITEGTFREDLYYRLNVVSLHLPPLRHRRED 318 Query: 365 VILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSG 424 + LL+ F E+ G LS+ A++ L HY +PGNVREL++ + R ++ Sbjct: 319 IPLLSQLFLERLSRDMGCPLPQLSSQAQHDLYHYEWPGNVRELQNILERGLLFCDGPTLE 378 Query: 425 DEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACAR 484 + + H P E AA+P ++Q L E E +++ I+ AL A A Sbjct: 379 QNHLPQQFHSQAPHHNG-CSETAAMP-LQQPLPEHLETIEQKLIQAALIDARGVQAKAAE 436 Query: 485 MLETDVANLHRLAKRLGL 502 +L +NL K+ L Sbjct: 437 LLGISRSNLQYKLKKYHL 454 >UniRef50_Q3A2M3 Two component, sigma54 specific, transcriptional regulator, Fis family n=16 Tax=Bacteria RepID=Q3A2M3_PELCD Length = 492 Score = 490 bits (1262), Expect = e-137, Method: Composition-based stats. Identities = 135/379 (35%), Positives = 206/379 (54%), Gaps = 18/379 (4%) Query: 129 TLDGMQPDQFDV----FSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQ 184 +D M+ +D F +EE+RL+ + NAL L +N+ + Sbjct: 114 AVDAMKKGAYDYITKPFKNEEIRLV-------VENALERMDLRRENLQLKKELG-QRFSF 165 Query: 185 TQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNC 244 +IG S M + IE V+AS +NVLI+GE+GTGKELVA+AIH S R P V + C Sbjct: 166 ANIIGKSKVMQGVYDLIEKVSASKVNVLITGESGTGKELVARAIHYNSDRHDRPFVAIYC 225 Query: 245 AALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQ 304 A+PE++ ESELFGH KGAFTGA+ + G FE+AD GTLFLDEI EL +Q KLLRV+Q Sbjct: 226 GAIPENLLESELFGHEKGAFTGAVQQKQGLFEVADGGTLFLDEIAELPPMMQVKLLRVIQ 285 Query: 305 YGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDD 364 + ++VG R L+VDVR++AATN+DL + V +FR DL++RL+V + +PPLR+R +D Sbjct: 286 EHEFRKVGGTRDLKVDVRLVAATNKDLAQAVTEDQFREDLYYRLNVIQVGLPPLRDRRED 345 Query: 365 VILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSG 424 + LL +F ++ + G Y +PGN+RELE+ + R VVL Sbjct: 346 IPLLVSHFLQKLTPGF---STTIPDGVMRRFLDYHWPGNIRELENTVERCVVLGGKGEIT 402 Query: 425 DEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACAR 484 ++ + ++ +P +L + A +++ + +AL + A Sbjct: 403 EDSLP---PHMLCISGTGDQQLTELPEEGLDLDDYLGAIEKDILLKALDRTGGVRKRAAE 459 Query: 485 MLETDVANLHRLAKRLGLK 503 +L ++ + G++ Sbjct: 460 LLHITFRSIRYRLAKFGIE 478 >UniRef50_B1ZR63 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZR63_OPITP Length = 490 Score = 490 bits (1262), Expect = e-137, Method: Composition-based stats. Identities = 157/433 (36%), Positives = 220/433 (50%), Gaps = 31/433 (7%) Query: 91 DSELPDPYDGLIPGQESLKVHACVGLPLFAGQNLIGAL--TLDGMQPDQFDVFSDEELRL 148 D LPD DG ++ V A PL G++ + M+ FD Sbjct: 54 DIRLPD-GDGQKFLEQ---VAAMPERPLVVMVTGYGSVESAVGCMRAGAFDYVLK---PF 106 Query: 149 IAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASD 208 + L A QL N L D E + ++G SP M +L++ IE VA +D Sbjct: 107 SPSQIDVILKKAQTYRQLLRVNRLLSDDPEDE---EGILVGRSPAMIRLRQIIERVAPTD 163 Query: 209 LNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAI 268 VLI+GE+GTGKE+VA+ + SPR + +NCAA+ E++ ESE FGH +GAFTGA Sbjct: 164 ATVLITGESGTGKEMVAREFYRRSPRRSQAFIKVNCAAISENLIESEFFGHERGAFTGAT 223 Query: 269 SNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATN 328 R G+FE+A GTL LDE+ E+ LQAKLLRVLQ + +RVG R ++V+VR++A +N Sbjct: 224 ERREGRFELAHQGTLLLDEVSEIPANLQAKLLRVLQEREFERVGGSRTIKVNVRIIATSN 283 Query: 329 RDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLS 388 RDL V G FR DL++RL+VFP+ VP LRER +D+ LLA +F + + G+ + Sbjct: 284 RDLMRHVEKGEFRQDLYYRLNVFPVHVPALRERPEDIALLADHFLRRFARKHGVKVTGFA 343 Query: 389 AGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVIL----EAQHFAFPEVTLPTP 444 AR L Y +PGNVREL++ + RAV+L+ R+ L + P P P Sbjct: 344 DSARAALIGYRWPGNVRELQNTVERAVILSETGRAVTAAALGLPGDFLPGELPLEPAPAP 403 Query: 445 EVAAVPVVKQNLREA---------------TEAFQRETIRQALAQNHHNWAACARMLETD 489 EV A+PV A + +++ IR AL Q N A L Sbjct: 404 EVPALPVAAVAEEPAGASPTVTDSHGQVLKLDELEKQAIRAALRQTGGNRTQAAAELGIS 463 Query: 490 VANLHRLAKRLGL 502 + L + L Sbjct: 464 IRTLRNKLQEYRL 476 >UniRef50_Q2RVQ1 Transcriptional regulator, NifA, Fis family n=3 Tax=Alphaproteobacteria RepID=Q2RVQ1_RHORT Length = 600 Score = 490 bits (1262), Expect = e-137, Method: Composition-based stats. Identities = 166/580 (28%), Positives = 264/580 (45%), Gaps = 85/580 (14%) Query: 2 SFSVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASAL-LRYDSRQFIPLAIDGLA 60 S + L ++ L + + ++ L ++ + L+ RQ +A+ G+ Sbjct: 22 SLPLLTLYEVSKILGSTLDLEHSLHDVLNVLASYMQMRRGVVTLKDAQRQLEVVAVSGMT 81 Query: 61 KDVLGRRFALEGHPRL-----EAIARAGDVVRFPADSELPDPYD-GLIPGQESLKVHACV 114 R A+EG R + + + P+ + P +V + + Sbjct: 82 -----LRNAVEGEARYPLAVAQEVVSTAMPMIVPSMAADPRFAAFAAEADGLDDEVQSMI 136 Query: 115 GLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQL-------- 166 +P+ G G+L+++ + + ++R + +A L ++ Sbjct: 137 CVPIKGGVKPFGSLSIERHRDRGTRFKFEHDVRFLTMVATLIAQTVSLERRVVGDRDRLI 196 Query: 167 ----ESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKE 222 + LP P + ++G S M ++ ++ +A S VL+ GE+GTGKE Sbjct: 197 EEKARLEKALPKREKPLKGTILENVVGRSSAMMKISAQVRQIAPSRATVLLRGESGTGKE 256 Query: 223 LVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGT 282 L+A+AIH SPR+ P + +NCAALPE++ ESELFGH KGAFTGA + R G+FEMA GT Sbjct: 257 LIAQAIHYLSPRSDKPFIKVNCAALPETLLESELFGHEKGAFTGATTERKGRFEMASGGT 316 Query: 283 LFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRA 342 LFLDEIGE+++ QAKLLRVLQ G+ +RVG + ++VDVR++AATN+DL + V G FRA Sbjct: 317 LFLDEIGEITVHFQAKLLRVLQEGEFERVGGGKTIKVDVRLVAATNKDLEDAVTRGEFRA 376 Query: 343 DLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPG 402 DL++R++V P+ +P LRER +DV LLA +F + G S + S GA + +FPG Sbjct: 377 DLYYRINVVPIFLPALRERREDVPLLAQFFLTKFNEENGRS-LRFSEGALTAMGGCNFPG 435 Query: 403 NVRELEHAIHRAVVLA-------------------------RATRSGDEVILEAQHFAFP 437 NVRELE+ + RA LA R + + P Sbjct: 436 NVRELENCVCRAATLAQDEVIQELGLSCHNDKCLSASLWQRRGSGRAIGGLAPVTEQNDP 495 Query: 438 EVT---------LPTPEVAAVPVVK--------------------------QNLREATEA 462 + T P A P + ++ + ++A Sbjct: 496 DTTSVAWEGDLRPAAPARAGTPPGRGYAGPGESADSPSSPSAPPPAAAPAAEDGEDESDA 555 Query: 463 FQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 QRE I A+ + A AR+L + K+ + Sbjct: 556 GQRERIVHAMEKAGWVQAKAARLLGMTPRQIGYALKKHDI 595 >UniRef50_B3E7V2 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Desulfuromonadales RepID=B3E7V2_GEOLS Length = 466 Score = 490 bits (1262), Expect = e-137, Method: Composition-based stats. Identities = 146/364 (40%), Positives = 205/364 (56%), Gaps = 11/364 (3%) Query: 146 LRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVA 205 L + ++ AL L ++ Q P D P + +IG S M L + IE VA Sbjct: 106 LDELESVVMRALEYQALKVRMPEQ---PVDEYPH--FLCSTIIGRSRQMLNLFEMIEKVA 160 Query: 206 ASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFT 265 S VLI GE+GTGKEL A+AIH+ S R+ V +NCAA+P+ + ESELFGHVKG+FT Sbjct: 161 ESSATVLIQGESGTGKELAARAIHQLSSRSSKNFVPVNCAAIPDDLLESELFGHVKGSFT 220 Query: 266 GAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLA 325 GA +NR G+FEMAD GTLFLDEIG++ LQ KLLRVLQ + + VG R +VDVR++A Sbjct: 221 GAYANRIGRFEMADKGTLFLDEIGDMKATLQVKLLRVLQAKEFEPVGSTRSQKVDVRIIA 280 Query: 326 ATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRV 385 A+N++L E+V FR DL++RLSV P+++PPLR+R +D+ LL +F Q + Sbjct: 281 ASNKNLDEQVATRDFREDLYYRLSVIPITIPPLRDRREDIPLLINHFQGQFNRDRRRLVK 340 Query: 386 VLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPE 445 + A +L +Y +PGNVRELE+ + R + + + + + E V P Sbjct: 341 GFTREALEMLCNYDWPGNVRELENLVERMITMKESGFITVDDLPEKYLAPRTVVAPPLSV 400 Query: 446 VAAVPVVKQ------NLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKR 499 +VPV K+ L A +AF+ I QAL + N A +L L K+ Sbjct: 401 SGSVPVGKELPPEGICLNSAVDAFENGLIMQALHRTGGNKKEAAALLNLKRTTLIEKLKK 460 Query: 500 LGLK 503 L+ Sbjct: 461 KNLQ 464 >UniRef50_Q30WZ9 Two component transcriptional regulator, Fis family n=2 Tax=Desulfovibrionaceae RepID=Q30WZ9_DESDG Length = 465 Score = 489 bits (1261), Expect = e-137, Method: Composition-based stats. Identities = 162/460 (35%), Positives = 239/460 (51%), Gaps = 23/460 (5%) Query: 61 KDVLGRRFAL----EGHPRLEAIARAGDVVRFPADSELPD--PYDGLIPGQESLKV---- 110 D G RF+L E A A G+ A PD D +PG + L+V Sbjct: 9 DDEDGIRFSLRGILEDEGYEVAEAETGEEGLKLATETPPDLIFLDIWLPGMDGLEVLDNL 68 Query: 111 ---HACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLE 167 A + + + +G I ++ ++ +D E L + + AL +L Sbjct: 69 RTADASLPVIMISGHGNIET-AVNAIKKGAYDFI---EKPLSLEKVVISANKALEYYRLR 124 Query: 168 SQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKA 227 +N + +M G S + +L+ +I VA +D VLI+GE GTGKE+ A++ Sbjct: 125 RENQALR--SRLTQSTTVEMTGNSASIVELRGQIGRVAPTDAWVLITGENGTGKEIAARS 182 Query: 228 IHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDE 287 IH +S R PLV +NCAA+PE + ESELFGH KGAFTGA + ++GKFEMA GTLFLDE Sbjct: 183 IHASSRRKDKPLVAVNCAAIPEELIESELFGHEKGAFTGAETAKTGKFEMAHQGTLFLDE 242 Query: 288 IGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHR 347 I ++SL QAK+LR+LQ +RVG + ++VDVRV+AATN+ L +E+ AGRFR DL++R Sbjct: 243 IADMSLKTQAKILRILQEQSFERVGGHKTVKVDVRVIAATNKSLEDEIAAGRFREDLYYR 302 Query: 348 LSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVREL 407 L V PL VPPLR+RGDDV+LL G F + G V + A + L Y +PGNVREL Sbjct: 303 LRVIPLVVPPLRQRGDDVMLLIGEFMNRMTAEHGFRPVTFAPDACSALLCYHWPGNVREL 362 Query: 408 EHAIHRAVVLARATRSGDEVILEAQHFA----FPEVTLPTPEVAAVPVVKQNLREATEAF 463 ++ + R +++ ++ A P+ P +P + + A AF Sbjct: 363 KNFVERMLIMHSGQTVTAAMLPPEYRCAGAGIMPQPCTAGPSDGMIPEGVMDFKAARTAF 422 Query: 464 QRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 + + L + N A + + + L+R K ++ Sbjct: 423 EARFLEAKLQEFGGNITRLAEAIGLERSYLYRKLKSYNIQ 462 >UniRef50_C1SGB7 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SGB7_9BACT Length = 473 Score = 489 bits (1261), Expect = e-137, Method: Composition-based stats. Identities = 137/350 (39%), Positives = 194/350 (55%), Gaps = 11/350 (3%) Query: 162 LIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGK 221 +IE+L + + + P K+ I S M QL VAAS+ VLI+GE+GTGK Sbjct: 112 VIEELVRRVLEIEETAPAVKRKKNTAIFRSAFMAQLFSLARDVAASEATVLITGESGTGK 171 Query: 222 ELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNG 281 E+ A+ IHE S R+ V +NCAALPE++ ESELFG+ KGAFTGA++ + GKFE+AD G Sbjct: 172 EVFARYIHENSNRSSGAFVAVNCAALPENLMESELFGYEKGAFTGAVNRKPGKFELADGG 231 Query: 282 TLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFR 341 T+ LDE+GE+ L LQAKLLRVLQ +++R+G + +++VR+LA TN+ L++EV G FR Sbjct: 232 TILLDELGEIPLHLQAKLLRVLQEKEVERLGGTKPFKINVRILATTNKVLKKEVDEGNFR 291 Query: 342 ADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFP 401 DL++RL+V + +PPLRER +D++ LA +F E+ G ++ A L Y +P Sbjct: 292 EDLYYRLNVISIELPPLRERKEDIMELATFFAEKYAQINGKGSCKMTDDAVKALLDYDWP 351 Query: 402 GNVRELEHAIHRAVVLARATRSGD-----------EVILEAQHFAFPEVTLPTPEVAAVP 450 GNVRELEH I RAVVL R + + + + Q A + Sbjct: 352 GNVRELEHTIERAVVLCRDGVISERNLFLHGITINQFMTDKQELAAADSYTGCETTEDSV 411 Query: 451 VVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRL 500 + +RE I + L + N A ML V L Sbjct: 412 SAGIDFAGTIAEMERELIIKTLKETGGNRTKAADMLGITVRTLRNKLNEY 461 >UniRef50_A9A0V6 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Deltaproteobacteria RepID=A9A0V6_DESOH Length = 465 Score = 489 bits (1261), Expect = e-137, Method: Composition-based stats. Identities = 143/377 (37%), Positives = 214/377 (56%), Gaps = 9/377 (2%) Query: 129 TLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGD--ATPFEAVKQTQ 186 ++ ++ +D S + AL A E+L+ +N+ AT + Sbjct: 95 AVEALKHGAYDYISK---PFKSDEVLLALKKASERERLKRENIALRQQIATLGRGYTFGK 151 Query: 187 MIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAA 246 +I S M + I VAA D VL++GE+GTGKELVA+++H SPRA N L+ +NC Sbjct: 152 IIAKSKAMQAVTDLITKVAAHDTTVLVTGESGTGKELVARSLHFNSPRAPNALIPVNCGG 211 Query: 247 LPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYG 306 +PE++ ESELFGHVKGAFTGA N++G E+A GTLFLDEIGEL +LQ KLLR+LQ Sbjct: 212 IPENLLESELFGHVKGAFTGADKNKTGLCEIAHKGTLFLDEIGELPASLQVKLLRLLQDR 271 Query: 307 DIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVI 366 +I+ VG +D+R++AAT R+L +V G FR DLF+RL+V + +PPLR+R +D+ Sbjct: 272 EIRPVGASATRTIDIRIVAATARNLEADVAEGVFREDLFYRLNVLHIHLPPLRDRQEDIP 331 Query: 367 LLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDE 426 LL F ++ + + L+ A + L +++PGNVRELE+ I RAVVLA GD Sbjct: 332 LLIETFVQEFNKKLDKTITGLAPAALSRLLAHTWPGNVRELENLIERAVVLAE----GDT 387 Query: 427 VILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARML 486 + + F + P A +++ A + F++ I +ALA+ N +++L Sbjct: 388 ITPDDLPPGFGTDSAGGPGDALAGFDGYSIKAAQKIFEKRLIEKALAKTGGNRTRTSKLL 447 Query: 487 ETDVANLHRLAKRLGLK 503 E +L K G++ Sbjct: 448 EISHPSLLAKMKEYGIE 464 >UniRef50_Q1Q0T6 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q0T6_9BACT Length = 472 Score = 489 bits (1260), Expect = e-137, Method: Composition-based stats. Identities = 133/382 (34%), Positives = 216/382 (56%), Gaps = 14/382 (3%) Query: 129 TLDGMQPDQFDV----FSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQ 184 +D M+ FD F ++ L L A+ AL + L +N A + Sbjct: 99 AIDIMKEGVFDYLVAPFDNDILEL-------AVKRALKVSSLTIENKNLRKALELQ-YNF 150 Query: 185 TQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNC 244 +IG SP + + + + V +D VL++GE+GTGKELV++AIH S R P V LNC Sbjct: 151 GNIIGNSPSVVETLRLVGEVTRTDSTVLVTGESGTGKELVSRAIHYNSDRKCGPFVALNC 210 Query: 245 AALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQ 304 AA+PE++ ESELFG+ KGAFTGA + G+FE+A GT FLDEI E+S A+QAK+LR+++ Sbjct: 211 AAIPENLLESELFGYEKGAFTGAEKTKKGRFELAAGGTFFLDEISEMSAAVQAKVLRIIE 270 Query: 305 YGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDD 364 +++R+G ++VDVR++ ATNRDL + V G+FR DL++R+SVFP+ +P LRER D Sbjct: 271 SKELERLGGTDTIKVDVRIICATNRDLVQMVKEGKFRDDLYYRISVFPIMLPALRERSGD 330 Query: 365 VILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSG 424 +I L+ +F + G + +VLS+ +L + + GN+REL++ I RAV+L + Sbjct: 331 IIPLSKHFVNHFSAKMGKTPIVLSSEVEKILIKHKWEGNIRELQNIIERAVILCKNGVIR 390 Query: 425 DEVILE--AQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAAC 482 E + + PE+ + +V + + +++ + +AL ++ +N Sbjct: 391 TEHLPTSIVHGYTPPELNENISQNNSVNFDIPPNGLSLDDLEKQLVAKALERSKNNITKA 450 Query: 483 ARMLETDVANLHRLAKRLGLKD 504 A++L ++ G+ + Sbjct: 451 AKLLGLTRGTFRYRLQKYGISN 472 >UniRef50_D1R5K3 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R5K3_9CHLA Length = 462 Score = 489 bits (1260), Expect = e-136, Method: Composition-based stats. Identities = 133/381 (34%), Positives = 211/381 (55%), Gaps = 13/381 (3%) Query: 129 TLDGMQPDQFDV----FSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQ 184 ++ M+ F+ FS + + I A LS ++ L + ++ Sbjct: 88 AVEAMKLGAFNYLIKPFSPDTIEAIIEKAKEHLSL------VQENQYLRQQVSTGDSRNH 141 Query: 185 TQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNC 244 Q+IG SP M Q+ +++ VA S+ +V I+GE+GTGKE++A+AIH S R+ P + +NC Sbjct: 142 FQIIGESPIMKQILRDVTRVAQSNASVFINGESGTGKEVIAQAIHANSARSQFPFIKVNC 201 Query: 245 AALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQ 304 AA+PE++ ESE FGH KGAFTGA R G+FE+A GTL LDEI E+ LA+QAKLLR +Q Sbjct: 202 AAIPETLIESEFFGHEKGAFTGANFKRLGRFELAHKGTLLLDEITEIPLAVQAKLLRAIQ 261 Query: 305 YGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDD 364 + +RVG + ++VDVR+++ +NRD+++ + R DL++RL+V P+ +PPLR+R +D Sbjct: 262 EQEFERVGGSKPIKVDVRLISTSNRDMKDAIAHKILREDLYYRLNVVPIYLPPLRDRPED 321 Query: 365 VILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSG 424 ++ LA YF E+ + S + L Y++PGNVREL + + RAVV+ + Sbjct: 322 ILPLAHYFLEKMCMENHKQAKTFSKESIKKLVGYAWPGNVRELANIVERAVVMTTNSEIT 381 Query: 425 DEVI-LEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACA 483 E + +E H P T T + + + + ++ I + L H+N A Sbjct: 382 PEHLYIENNHPNLPLRTASTLSQNTLTSLPVGM--TLQELEKRLIIETLQAQHNNRTKTA 439 Query: 484 RMLETDVANLHRLAKRLGLKD 504 +L V L +K+ Sbjct: 440 EVLGISVRTLRNKLNEYNMKN 460 >UniRef50_B8FIT8 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FIT8_DESAA Length = 588 Score = 488 bits (1258), Expect = e-136, Method: Composition-based stats. Identities = 137/329 (41%), Positives = 195/329 (59%), Gaps = 13/329 (3%) Query: 175 DATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPR 234 + E + +IG S M + + +E +A + VLI+GE+GTGKELVAKA+H R Sbjct: 267 ERELQERNQFHNIIGASHKMQAVYQLLENLADFETTVLITGESGTGKELVAKALHHTGSR 326 Query: 235 AVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLA 294 A P V +NC+AL E++ ESELFGHVKGAFTGAI + G+F+ A GTL LDEIG++S Sbjct: 327 AFKPFVSVNCSALAENLLESELFGHVKGAFTGAIRDYQGRFQAAHTGTLLLDEIGDISPR 386 Query: 295 LQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLS 354 +Q KLLRVLQ + +RVGD + ++VDVRV+A TN+DL+E+V G FR DL++RL+V + Sbjct: 387 IQLKLLRVLQEREFERVGDVQPIKVDVRVIACTNQDLKEKVGLGEFREDLYYRLNVMEIK 446 Query: 355 VPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRA 414 +PPLRER +D+ LLA +F + + ++ +S N +Y +PGNVRELEH+I RA Sbjct: 447 LPPLRERREDIPLLADHFTARFEKKFNITIPGVSDKVMNAFMNYHWPGNVRELEHSIERA 506 Query: 415 VVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQ 474 VL R E I P A + L++ A + I AL + Sbjct: 507 TVLCRDKMISLEHI-------------PGEIAEAYSLSGPRLKKQPAADEPNEIIDALKR 553 Query: 475 NHHNWAACARMLETDVANLHRLAKRLGLK 503 N A AR+L ++R ++ G++ Sbjct: 554 TGWNKAKAARLLGVSRKTIYRKIEKYGIQ 582 >UniRef50_Q8Z333 Transcriptional regulatory protein zraR n=36 Tax=Proteobacteria RepID=ZRAR_SALTI Length = 441 Score = 488 bits (1257), Expect = e-136, Method: Composition-based stats. Identities = 158/401 (39%), Positives = 216/401 (53%), Gaps = 22/401 (5%) Query: 99 DGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALS 158 DG+ +E ++ + + + + + ++ ++ D LI L L Sbjct: 63 DGIATLKEIKALNPAIPILIMTAFSSVET-AVEALKAGALDY-------LIKPLDFDRLQ 114 Query: 159 NALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETG 218 L E+ + G P + Q MIG SP M L EI +VA SD VLI G++G Sbjct: 115 ETL--EKALAHTRETGAELPSASAAQFGMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSG 172 Query: 219 TGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMA 278 TGKELVA+A+H S R+ PLV LNCAAL ES+ ESELFGH KGAFTGA R G+F A Sbjct: 173 TGKELVARALHACSARSDKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEA 232 Query: 279 DNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAG 338 D GTLFLDEIG++S +Q +LLR +Q ++QRVG ++ + VDV ++AAT+RDL EEV AG Sbjct: 233 DGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVWLIAATHRDLAEEVSAG 292 Query: 339 RFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHY 398 RFR DL++RL+V + +P LR+R +D+ LLA +F + R + + A +LL HY Sbjct: 293 RFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKAVKGFTPQAMDLLIHY 352 Query: 399 SFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLRE 458 +PGN+RELE+AI RAVVL + P TP A Q L + Sbjct: 353 DWPGNIRELENAIERAVVLLTGEYISER--------ELPLAIAATPIKAENSAEIQPLVD 404 Query: 459 ATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKR 499 ++E I AL + N AR L L R Sbjct: 405 ----VEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 >UniRef50_Q6ARB9 Probable two-component system response regulator (Ntr family) n=1 Tax=Desulfotalea psychrophila RepID=Q6ARB9_DESPS Length = 443 Score = 488 bits (1257), Expect = e-136, Method: Composition-based stats. Identities = 140/376 (37%), Positives = 203/376 (53%), Gaps = 21/376 (5%) Query: 129 TLDGMQPDQFDVFS-DEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQTQM 187 ++ M+ FD + ++ + + AL + L P K ++ Sbjct: 88 AIEAMKKGAFDYVTKPVDIDNLHIAISKALHQKI-------SPPLSPGTEPQADSKFPEI 140 Query: 188 IGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAAL 247 IG S M +L +I ++A SD +L+SGE+GTGKELVA AIH S R L+ +NCAAL Sbjct: 141 IGESAPMQELFSQISLIAPSDATILLSGESGTGKELVATAIHRHSKRKEGALIRINCAAL 200 Query: 248 PESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGD 307 E++ ESELFGH GAFTGA + G FE AD GTLFLDEIG++SL Q K+LRVLQ G+ Sbjct: 201 HENLLESELFGHELGAFTGAAKQKKGLFERADKGTLFLDEIGDMSLTTQVKILRVLQEGE 260 Query: 308 IQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVIL 367 +RVG + ++V+VR++AA++R+L + + G FR DLF RLSV PL +P LRER D+ + Sbjct: 261 FERVGGNDSIKVNVRIIAASHRNLEKLIEEGTFRQDLFFRLSVVPLHLPALRERLVDIPI 320 Query: 368 LAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEV 427 LA +F + S A +LL Y +PGN+RELE++I R V+L + Sbjct: 321 LANFFLSLYNKKNRKDIKGFSQEALDLLMEYPWPGNIRELENSIERGVILCLGEQITAH- 379 Query: 428 ILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLE 487 LP + + R+ ++ I+QALA++ N +A A+ L Sbjct: 380 ------------ELPPQFFRNRSPGELSSRDTLRDVEKRAIQQALARSGFNKSATAKQLG 427 Query: 488 TDVANLHRLAKRLGLK 503 L + GL+ Sbjct: 428 IARQTLLNKIRDYGLE 443 >UniRef50_Q1PYI3 Strongly similar to sigma 54 response regulatory protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYI3_9BACT Length = 448 Score = 488 bits (1257), Expect = e-136, Method: Composition-based stats. Identities = 145/340 (42%), Positives = 205/340 (60%), Gaps = 11/340 (3%) Query: 161 LLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTG 220 +QL QN L + + ++++G SP M ++ K IE VA S +VLI GETGTG Sbjct: 119 REKQQLVIQNRLLKEELKDK-YTFSELVGGSPQMHRIFKMIEDVAPSTASVLIMGETGTG 177 Query: 221 KELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADN 280 KELVA AIH S RA P V L+CAAL E + ESELFGH KGAFTGAI +R G+FE+AD Sbjct: 178 KELVAHAIHYRSERAGKPFVALHCAALSEGILESELFGHEKGAFTGAIQSRKGRFELADG 237 Query: 281 GTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRF 340 GTLFLDE+ E+SL +Q KLLRVL+ G+ +RVG ++ ++VDVR +AATNR+L EEV GRF Sbjct: 238 GTLFLDELAEMSLKVQVKLLRVLEKGEFERVGGEKTIKVDVRCIAATNRNLEEEVSEGRF 297 Query: 341 RADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSF 400 R DLF+RL+V + +PPLRER DD+ +L+ YF + + A L + + Sbjct: 298 REDLFYRLNVINIQMPPLRERKDDIPILSNYFAVKYAKKYKKEIKGFDPEAIKALLSHHW 357 Query: 401 PGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREAT 460 GN+REL++ I RA+VL ++ + H PE +P E +PV+K + Sbjct: 358 QGNIRELQNTIERAIVLCKSD------TISVDHL--PESIMPDNEY--IPVIKIPIGTTL 407 Query: 461 EAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRL 500 + ++E I++ L + + + A++L + K Sbjct: 408 KEAEKEIIQRTLQITNGSKQSAAKILGISTRKIEYKTKEW 447 >UniRef50_A7HIM1 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Myxococcales RepID=A7HIM1_ANADF Length = 495 Score = 488 bits (1256), Expect = e-136, Method: Composition-based stats. Identities = 162/482 (33%), Positives = 250/482 (51%), Gaps = 22/482 (4%) Query: 33 RQVLECDASALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRF---P 89 R + AS L + + ++ + + GH L A + + P Sbjct: 13 RASVPAGASVRLSPPMARILIADDHDAVREGMAIALSRLGHDVLAVRGGAEAIAAYRKKP 72 Query: 90 ADSELPD----PYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDV----F 141 AD + D P DG+ + ++ + + + I A+ ++ M+ D F Sbjct: 73 ADVVVTDLRMVPVDGIEVVRRLRELDPDATVLVVSAHGTI-AVAVEAMREGAIDFIEKPF 131 Query: 142 SDEELRLIAALAAGALSNALLIEQLESQNMLPGD-ATPFEAVKQTQMIGLSPGMTQLKKE 200 S + LR A ++ A + + + ++G S M ++ + Sbjct: 132 SPDVLR---ARVEKSIEIARERKGARTARARAEALEEDLGRDRAHGLVGSSEPMRRVLDQ 188 Query: 201 IEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHV 260 + VA++ VL+ GE+GTGKELVA+AIH+ASPR P V ++CAA+PE + ESELFGH Sbjct: 189 VRKVASTGATVLVLGESGTGKELVARAIHDASPRREQPFVSISCAAIPEGLLESELFGHE 248 Query: 261 KGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVD 320 KGAFTGAI + G+FE+A+ GTLFLDE+GE+ A+Q KLLRVLQ +RVG + + VD Sbjct: 249 KGAFTGAIRRKLGRFELANGGTLFLDEVGEIPHAVQVKLLRVLQERQFERVGGEETVEVD 308 Query: 321 VRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQ 380 VRV++ATNR+L + V +GRFR DL++RL+V P+ +PPLR+R DV LA +F + R Sbjct: 309 VRVVSATNRNLAQMVESGRFREDLYYRLNVVPILLPPLRDRPGDVEELARFFVARLAPRM 368 Query: 381 GLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVT 440 + L+ A LL+ + +PGNVRELE+ I +A+V A + E A P + Sbjct: 369 SRAVTGLAPEALELLRRHRWPGNVRELENVIEQALVFAEGELVRPRDLPEGVRKAPPAPS 428 Query: 441 LPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRL 500 LP VP ++L + E +R+ I A + A AR+L + L+ ++ Sbjct: 429 LP------VPSGDRSLTDILEDLERQLILAAYEKARGVKAETARLLGIKPSALYYKLEKY 482 Query: 501 GL 502 G+ Sbjct: 483 GI 484 >UniRef50_Q7UK84 Probable two-component response regulator n=1 Tax=Rhodopirellula baltica RepID=Q7UK84_RHOBA Length = 654 Score = 487 bits (1255), Expect = e-136, Method: Composition-based stats. Identities = 158/491 (32%), Positives = 240/491 (48%), Gaps = 20/491 (4%) Query: 20 GHQDRFQRLITTLRQVLECDASALLRYDSR--QFIPLAIDGLAKDVLGRRFALEGHPRLE 77 + +VL C+ + + +D R + I G+ VL + + Sbjct: 172 SDAQLLASMADCACEVLNCERATIFLWDKRTKKLIGRPAIGIEGGVLE---VEDNAGIVG 228 Query: 78 AIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLF-AGQNLIGALTLDGMQPD 136 +G + A + I ++ + + +P+ + +IG +P Sbjct: 229 EALHSGSPRWWSAGGTDEGRVNRRIDQAQNFTTRSLLAVPMVNSRDQVIGVFEGINARPG 288 Query: 137 Q-----FDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLS 191 FD L +A A+ A+ + L D +A + +IG Sbjct: 289 DHRNESFDAADVRTLTELAMHASIAIDSYRTRTDLTE----TRDRLVEQAAQSKPLIGNH 344 Query: 192 PGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESV 251 + ++++ VA +DL+VL+ G GTGKE++A+ IH S R P V +NCAAL E++ Sbjct: 345 HSIQEIRRNATKVAPTDLSVLVLGSNGTGKEVLAQHIHYQSERRNGPFVAVNCAALVETL 404 Query: 252 AESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRV 311 ESELFGH KGAFT A R GKFE+A+ GTLFLDE+G++S QAKLLRVL+ + RV Sbjct: 405 LESELFGHEKGAFTDASDTRVGKFELANGGTLFLDEVGDMSAGGQAKLLRVLEEKVVVRV 464 Query: 312 GDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGY 371 G R + VDVRV+AATN+ L+E + A RFR DLF RL+V L++PPL RGDDV+ LA + Sbjct: 465 GGSRPIPVDVRVIAATNQPLQELISAKRFREDLFFRLNVVSLTLPPLSHRGDDVMELAEH 524 Query: 372 FCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEA 431 F + G + +A AR+ + + +PGNVREL + + R L +V+ + Sbjct: 525 FLVDFCRQIGRAVPTFAASARDAMLSHDWPGNVRELRNTVERICYLTTT-----DVVEAS 579 Query: 432 QHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVA 491 P T + + V NL AT FQ + I + +A N A L + Sbjct: 580 DLMMSPSATRASTVSPTMDDVDGNLNSATREFQIQHIERLIASCGGNMTEAAGKLGLHRS 639 Query: 492 NLHRLAKRLGL 502 NL+R ++LG+ Sbjct: 640 NLYRKMRQLGM 650 >UniRef50_C6WY59 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Methylophilaceae RepID=C6WY59_METML Length = 457 Score = 487 bits (1255), Expect = e-136, Method: Composition-based stats. Identities = 164/433 (37%), Positives = 232/433 (53%), Gaps = 29/433 (6%) Query: 79 IARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQF 138 + A V D +P DGL +E K + + + Q IG+ +D M+ Sbjct: 44 VINAQQVDCVVTDLHMPR-MDGLQLLKEVRKTDTELPVIIVTAQGEIGS-AIDAMKNGAS 101 Query: 139 DV----FSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGM 194 D F EL L A+ AL +L +N + + T +IG SP M Sbjct: 102 DYILRPFDLAELEL-------AIKRALSFSRLVVENRFLRE----DKADTTGLIGNSPAM 150 Query: 195 TQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAES 254 L + I VA VL++GETGTGKELVA+AIH ASPR V +NCAA+P + ES Sbjct: 151 QHLAESIRQVAPEKATVLVAGETGTGKELVARAIHAASPRNNALFVAVNCAAIPHEMLES 210 Query: 255 ELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDD 314 ELFGH KGAFTGA+ R GKFE+AD GTLFLDE+ E+ + LQAKLLR LQ I+R+G + Sbjct: 211 ELFGHEKGAFTGAVKERIGKFELADGGTLFLDEVTEMPMQLQAKLLRALQENVIERLGGN 270 Query: 315 RCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCE 374 R + VD+RV+AATNR+ R+ + G+ R DL++RL+VF + +P L+ R D+ LLA +F Sbjct: 271 RPIAVDIRVVAATNRNPRDAIKDGKLREDLYYRLNVFRIDLPALKARKSDIELLATHFLA 330 Query: 375 QCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGD-----EVIL 429 + RV +SA A +L Y +PGNVRELE+ + RA +++ + E++ Sbjct: 331 K-------RRVDISAQAVQVLMQYDWPGNVRELENVLERAAIISGNQQIQPQHLPAEMLN 383 Query: 430 EAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETD 489 F + A P L A E +R+ I +ALAQ + N + A++LE Sbjct: 384 SNGEFIDATALGHNADTAEAPQNPLCLPNAVEQLERQLIAKALAQTNGNKSKAAKLLEIS 443 Query: 490 VANLHRLAKRLGL 502 +L + G+ Sbjct: 444 ERSLWYKLSQYGI 456 >UniRef50_Q1PZ68 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZ68_9BACT Length = 470 Score = 487 bits (1254), Expect = e-136, Method: Composition-based stats. Identities = 147/428 (34%), Positives = 222/428 (51%), Gaps = 19/428 (4%) Query: 81 RAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFAGQNLIGA--LTLDGMQPDQF 138 D +P DGL + K+ PL G+ + ++ M+ + Sbjct: 50 HTLQPALIFLDINMPQ-LDGLKTLE---KIREMKHPPLVVIVTAHGSEKIAVEAMKKGAY 105 Query: 139 DV----FSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGM 194 D + EELR+I NAL L+ +N +++G S M Sbjct: 106 DYIAKPYEMEELRIIT-------RNALEKIALQEENTRLRMEIGM-LEGYGELLGQSKIM 157 Query: 195 TQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAES 254 ++ IE V +D+ VL+ GE+G+GKEL A IH S R P + +NCAA+PE++ ES Sbjct: 158 QEVFDRIEKVVTADVTVLLQGESGSGKELAAHEIHRRSKRKNGPFIVMNCAAVPETLIES 217 Query: 255 ELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDD 314 ELFGH +G+FTGA R GKFEMA+NGT+ LDEIG++SL+ Q+KLLRVLQ +R+G Sbjct: 218 ELFGHERGSFTGATERRMGKFEMANNGTILLDEIGDMSLSTQSKLLRVLQEQKFERLGGT 277 Query: 315 RCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCE 374 L VDVR+++AT+RDL EE+ GRFR DL++R++V + +PPLR+R +D+ LL F + Sbjct: 278 ETLAVDVRIISATHRDLEEEIEEGRFREDLYYRINVVNIKIPPLRKRKEDIPLLVNRFIQ 337 Query: 375 QCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHF 434 + + V +S A L Y++PGN+R+L++ I A+VL D L Sbjct: 338 HFSKKHYKNVVSISNDAMKKLSAYNWPGNIRQLKNTIESAIVLTNNDVL-DISDLSEDII 396 Query: 435 AFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLH 494 + T V ++ + E F+++ I + L + N + A L+ NL Sbjct: 397 REEKTPDSTKNVHYHLSFREAKKILIENFEKDFISKKLEECGGNISHTAEALDMHRQNLQ 456 Query: 495 RLAKRLGL 502 + K L L Sbjct: 457 QKIKDLQL 464 >UniRef50_B2S3B3 Response regulatory protein n=28 Tax=Spirochaetales RepID=B2S3B3_TREPS Length = 458 Score = 486 bits (1252), Expect = e-136, Method: Composition-based stats. Identities = 151/460 (32%), Positives = 235/460 (51%), Gaps = 19/460 (4%) Query: 42 ALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGL 101 ++L D + I + +D F E IA GD+ D ++P G Sbjct: 4 SILVLDDEKNIREGLQMALEDEGYEVFTAEDGNTGVEIALKGDIDLIITDLKMPR-MSGE 62 Query: 102 IPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFS-DEELRLIAALAAGALSNA 160 + Q V + + + G + ++ M +D + +L ++ L AL N Sbjct: 63 LVLQHVHAVLPDIPIIILTGHGTVEN-AVEAMHKGAYDFLTKPLDLNRLSLLVRRALQNR 121 Query: 161 LLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTG 220 LI Q G+ T FE ++G SP M ++ ++ AAS +VLI+GE+G G Sbjct: 122 ELIVQHRELIKQIGNRTSFE-----NIVGESPAMNKVFDMVKKAAASKASVLITGESGVG 176 Query: 221 KELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADN 280 KEL+A AIH SPR PL+ ++CA+ E V ESELFGH +GAFTGA++ G+FE+A Sbjct: 177 KELIANAIHNLSPRKAKPLIKVHCASFAEGVLESELFGHERGAFTGAVNRMKGRFELAHE 236 Query: 281 GTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRF 340 G++FLDEIGE+S+A+Q KLLRVLQ +RVG ++VDVRV++ATNR+L EE+ F Sbjct: 237 GSMFLDEIGEVSMAVQIKLLRVLQERSFERVGGRETIKVDVRVISATNRNLLEEIKRNLF 296 Query: 341 RADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSF 400 R DL++RL+V + VP LRER +D+ LL F ++ G + A++ L Y + Sbjct: 297 REDLYYRLNVVHIHVPALRERKEDLPLLIATFLKEIAEENGKKITSIDPQAQSALHAYDW 356 Query: 401 PGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREAT 460 PGN+R+L + I AV+++ ++ + + P +L +P+ + Sbjct: 357 PGNIRQLRNCIESAVIMSSGP------VIHIEDLSEPIRSLGETSSIRIPIGV-----SM 405 Query: 461 EAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRL 500 E ++E I Q L N + A +L L+ + Sbjct: 406 EDAEKEIILQTLEAQKGNKSKTADVLGIGRKTLYLKLDQY 445 >UniRef50_D2TTF4 Two-component system response regulator n=3 Tax=Proteobacteria RepID=D2TTF4_CITRO Length = 441 Score = 486 bits (1252), Expect = e-136, Method: Composition-based stats. Identities = 154/401 (38%), Positives = 220/401 (54%), Gaps = 22/401 (5%) Query: 99 DGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALS 158 DG+ +E ++ + + + + + ++ ++ D LI L L Sbjct: 63 DGIETLREIKALNPAIPVLIMTAFSSVET-AVEALKTGALDY-------LIKPLDFDRLQ 114 Query: 159 NALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETG 218 L +Q + P + Q+ M+G SP M QL EI +VA SD VLI G++G Sbjct: 115 ETLEKSLAHAQEV--AGELPSVSASQSGMVGKSPAMQQLLSEIAMVAPSDATVLIHGDSG 172 Query: 219 TGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMA 278 TGKELVA+A+H +S R+ PLV LNCAAL ES+ ESELFGH KGAFTGA R G+F A Sbjct: 173 TGKELVARALHASSARSDKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEA 232 Query: 279 DNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAG 338 D GTLFLDEIG++S +Q +LLR +Q ++QRVG ++ L VDVR++AAT+RDL +E AG Sbjct: 233 DGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTLSVDVRLIAATHRDLAQEASAG 292 Query: 339 RFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHY 398 RFR DL++RL+V + P LR+R +D+ LLA +F ++ R + + A +LL HY Sbjct: 293 RFRQDLYYRLNVVTIETPSLRQRREDIPLLAEHFLQRFAARNRKAVKGFTPQAMDLLIHY 352 Query: 399 SFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLRE 458 ++PGN+RELE+AI RAVVL + + A A+P++ + Sbjct: 353 AWPGNIRELENAIERAVVLLTGEYISERELPLAI------------ANQAMPLMPAQAIQ 400 Query: 459 ATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKR 499 ++E I AL + N AR L L R Sbjct: 401 PLVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 >UniRef50_Q53206 Nif-specific regulatory protein n=5 Tax=Alphaproteobacteria RepID=NIFA_RHISN Length = 594 Score = 486 bits (1251), Expect = e-135, Method: Composition-based stats. Identities = 170/536 (31%), Positives = 249/536 (46%), Gaps = 42/536 (7%) Query: 8 LANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRY-DSRQFIPLAIDGLAKDVLGR 66 L I+ L + + +I TL +L A++ + A G+ G Sbjct: 57 LYRISKVLITSASLEIKLANVINTLPALLPMRRGAIVVVGAEGEPETTATFGVEPPSSGA 116 Query: 67 RFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFAGQNLIG 126 R + ++ I G + P + D L +G+P+ A Q +G Sbjct: 117 R-HIAAKAAIDRIVAKGAPLVVPDTCKSELFQDELQSIVSGTGQVTFIGVPMKADQETLG 175 Query: 127 ALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLP------------- 173 L +D + EE ++ A + A+ + ES++ P Sbjct: 176 TLWIDRAKDGAATRTQFEEEVRFLSMVANLAARAVRLNGHESRDSRPIGEEGDRKISGGD 235 Query: 174 ---GDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHE 230 + T + ++G SP + Q+ + +++VA ++ VL+ GE+GTGKE AKAIHE Sbjct: 236 KELPEPTRQRPTRIDWIVGESPALRQVVESVKVVAQTNSAVLLRGESGTGKEFFAKAIHE 295 Query: 231 ASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGE 290 SPR P V LNCAAL V ESELFGH KGAFTGAIS R+G+FE+AD GTL LDEIGE Sbjct: 296 LSPRRKKPFVKLNCAALSAGVLESELFGHEKGAFTGAISQRAGRFELADGGTLLLDEIGE 355 Query: 291 LSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSV 350 +S A QAKLLRVLQ G+++RVG + L+VDVR++ ATN+DL V G FRADL++R++V Sbjct: 356 ISPAFQAKLLRVLQEGELERVGGTKTLKVDVRLICATNKDLETAVAEGEFRADLYYRINV 415 Query: 351 FPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHA 410 PL +PPLRER D+ LA F ++ + + + A +L FPGNVRELE+ Sbjct: 416 VPLFLPPLRERNGDIPRLAKVFLDRFNRENNRN-LEFTPAALEILSRCKFPGNVRELENC 474 Query: 411 IHRAVVLARATRSGDEVILEAQHFAFPE-----------------------VTLPTPEVA 447 + R LAR+ F + + +P Sbjct: 475 VRRTATLARSATIVPSDFSCQNDQCFSSMLGKTADRPLGSHSLNGLAMSKRLPVESPASL 534 Query: 448 AVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 P L A RE + A+ + A AR+L + +R ++ Sbjct: 535 GYPAGPGGLTVAPHLSDRELLISAMEKAGWVQAKAARILGLTPRQVGYALRRHHIQ 590 >UniRef50_C0QPW4 Sigma-54 specific transcriptional regulator, Fis family n=1 Tax=Persephonella marina EX-H1 RepID=C0QPW4_PERMH Length = 443 Score = 486 bits (1251), Expect = e-135, Method: Composition-based stats. Identities = 130/339 (38%), Positives = 195/339 (57%), Gaps = 8/339 (2%) Query: 166 LESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVA 225 +E + + +MIG S M ++ + I A +D VLI GETGTGKEL A Sbjct: 110 IERLTGTEKEKIERGLEENKEMIGTSEAMKKVFQLIRKFAPTDYPVLIIGETGTGKELTA 169 Query: 226 KAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFL 285 +AIHE S RA P V +NCAA+P + E+ELFG+ KGAFTGA R GK E A+ GTLFL Sbjct: 170 RAIHERSNRADKPFVVVNCAAIPHDLLEAELFGYEKGAFTGADKKRIGKIEYANGGTLFL 229 Query: 286 DEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLF 345 DEIG++ LQ+K+LR LQ +R+G + DVR++AATN DL + V G+FR DL+ Sbjct: 230 DEIGDMPYDLQSKILRFLQEYTFERIGSNETKTADVRIIAATNVDLDQAVKEGKFRRDLY 289 Query: 346 HRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVR 405 +RLSV + +PPLR+RG+D +++A YF E+ G + L+A A +++ + +PGNVR Sbjct: 290 YRLSVLTIKLPPLRDRGEDPVIMAKYFVERYSKELGKNIKGLTADALEVIRDHPWPGNVR 349 Query: 406 ELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQR 465 EL + I +AVVL D+ ++ + P ++ NL+ E +R Sbjct: 350 ELINTIRKAVVLT------DKEFIDVEDLDLKVKCNPQGSGNGEDIL--NLKRNIEDLER 401 Query: 466 ETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLKD 504 +++A N + A+ML +++L ++ G+ + Sbjct: 402 RLLKEAFILAKGNISKVAKMLGISRPKVYKLMEKHGIGE 440 >UniRef50_Q9APD9 Transcriptional regulatory protein zraR n=89 Tax=Proteobacteria RepID=ZRAR_KLEOX Length = 443 Score = 485 bits (1250), Expect = e-135, Method: Composition-based stats. Identities = 147/339 (43%), Positives = 194/339 (57%), Gaps = 10/339 (2%) Query: 161 LLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTG 220 L + + + L Q M+G SP M L I +VA SD VLI GE+GTG Sbjct: 115 LTLSEALAHTRLSESPVTETPAAQFGMVGDSPAMRALLNNITLVAPSDATVLIHGESGTG 174 Query: 221 KELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADN 280 KELVA+A+H +S R+ PLV LNCAAL ES+ ESELFGH KGAFTGA R G+F AD Sbjct: 175 KELVARALHASSARSRRPLVILNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADG 234 Query: 281 GTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRF 340 GTLFLDEIG++S +Q +LLR +Q ++QRVG ++ L VDVR++AAT+RDL EEV AGRF Sbjct: 235 GTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTLSVDVRLIAATHRDLAEEVSAGRF 294 Query: 341 RADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSF 400 R DL++RL+V + +PPLR R +D+ LA YF ++ R + + A +LL HY++ Sbjct: 295 RQDLYYRLNVVTIDMPPLRHRREDIPPLARYFLQRYAERNRKAVQGFTPQAMDLLIHYAW 354 Query: 401 PGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREAT 460 PGN+RELE+A+ RAVVL + + P + Q L E Sbjct: 355 PGNIRELENAVERAVVLLTGEY------ISERELPLAITGTPVADAPHGDDSIQPLVE-- 406 Query: 461 EAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKR 499 ++E I AL + N AR L L R Sbjct: 407 --VEKEAILAALERTGGNKTEAARRLGITRKTLLAKLSR 443 >UniRef50_B9M610 Two component, sigma54 specific, transcriptional regulator, Fis family n=14 Tax=Deltaproteobacteria RepID=B9M610_GEOSF Length = 465 Score = 485 bits (1250), Expect = e-135, Method: Composition-based stats. Identities = 157/429 (36%), Positives = 236/429 (55%), Gaps = 13/429 (3%) Query: 76 LEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQP 135 L + + + D ++PD DGL QE K+ + + + I A ++ M+ Sbjct: 45 LARLQQGPNADLLLQDVKMPD-MDGLQILQEVKKLRPGLPVVIMTAFGTIDA-AVEAMKL 102 Query: 136 DQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMT 195 +D + G L N L E L +N + + ++ S Sbjct: 103 GAYDYVTK---PFPKEKILGVLENVLERELLRKENQQLKEELG-KVTLTDAIVFASDRFR 158 Query: 196 QLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESE 255 ++ + VAAS+ N+LI GE+GTGKEL+A AIH S R ++ +NCAAL +++ ES+ Sbjct: 159 EVYELTLEVAASEANILILGESGTGKELIAGAIHRHSKRRGRRILSINCAALSDTLLESQ 218 Query: 256 LFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDR 315 LFGHV+GAFTGA +N+ G E AD+GTLF+DEIG++SL LQAKLLRV+Q GD VG R Sbjct: 219 LFGHVRGAFTGATTNQKGLLEEADSGTLFMDEIGDMSLMLQAKLLRVIQEGDFIPVGATR 278 Query: 316 CLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQ 375 +VD+R +AATN++L +EV GRFR DL++RL+V + +PPLRER +D+ LA +F + Sbjct: 279 AKKVDIRFVAATNKNLEKEVAEGRFREDLYYRLNVISIPLPPLRERKEDIEPLARHFLRK 338 Query: 376 CRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLAR-ATRSGDEVILEAQHF 434 R + A +L+ YS+PGN+RELE+ + RAV+LAR + D + + ++ Sbjct: 339 YNQRMNKEVDRFTREALDLMLGYSWPGNIRELENVVERAVILARSGVVTTDHLPMWKKNV 398 Query: 435 AFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLH 494 A T P +++ +V + E +RE IRQ LA+ + + A +L L Sbjct: 399 ASTAATGPASALSSHQLV------SLENVEREHIRQTLARTGFHKSRTAEILGISRKTLD 452 Query: 495 RLAKRLGLK 503 R GLK Sbjct: 453 RKIAEFGLK 461 >UniRef50_D2QZ64 Transcriptional regulator, NifA subfamily, Fis Family n=2 Tax=Planctomycetaceae RepID=D2QZ64_9PLAN Length = 677 Score = 484 bits (1248), Expect = e-135, Method: Composition-based stats. Identities = 169/507 (33%), Positives = 250/507 (49%), Gaps = 21/507 (4%) Query: 8 LANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLAKDVLGRR 67 L +A EL ++ L + + DA + A D V R Sbjct: 175 LCRLAFELASQPDLAAVAHLALSGLFESTQVDAGGVWLLPRGNASNSAAD--LSLVASRT 232 Query: 68 FALEGHPRLEAIARAGDVVRFPADSELPDPYDG-----LIPGQESLKVHACVGLPLFAGQ 122 L + RL A A V ++ L +G + + + P+ + Sbjct: 233 DRLPSYHRLSAFLAA--TVLRDGEAVLARNIEGDSQLASRDSKGEFHTTSVLCAPIRLEK 290 Query: 123 NLIGALTLDGMQPDQFDVFSDEELRL-IAALAAGALSNALLIEQLES---QNMLPGDATP 178 ++G + L + D E L +A A A+ N ++L Q Sbjct: 291 KVVGMIHLYSTDSARVPDPDDLEFTLAVADNVALAVRNLHRQQELAENLLQTRTEVQQLR 350 Query: 179 FEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNP 238 + +++++G S ++ ++++I A S VLI GE+G GKELVA+A+H +SPR P Sbjct: 351 KQLGAESELVGSSEVLSSVQRQIARAAPSRATVLIRGESGVGKELVARAVHYSSPRKRGP 410 Query: 239 LVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAK 298 V LNCAAL ES+ ESELFGH KGAFTGA + GKFE A GTL LDEIGE+S ++QAK Sbjct: 411 FVCLNCAALSESLLESELFGHEKGAFTGATDRKIGKFESAHQGTLMLDEIGEMSPSIQAK 470 Query: 299 LLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPL 358 LRVL+ +RVG + ++VDVRV+AATNRDL + V G FR DL+ RL+V + VPPL Sbjct: 471 FLRVLEGHPFERVGGSQPIKVDVRVIAATNRDLEKAVAEGAFRRDLYFRLNVVEIQVPPL 530 Query: 359 RERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLA 418 R+R +D+I LA +F ++ G S A LQ Y +PGNVREL++ I RAVVL+ Sbjct: 531 RKRPEDIIELAHFFLQRFNAETGRKLRGFSPAATERLQQYRWPGNVRELKNVIERAVVLS 590 Query: 419 RATRSGDEVI-LEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHH 477 R E + L A P+P+ + VP+ + + ++ I L + Sbjct: 591 RGDVVEPEDLHLSNLATASESGDNPSPKTSFVPM-------SLDDIEKRHILATLKATNW 643 Query: 478 NWAACARMLETDVANLHRLAKRLGLKD 504 + + A +L + + L R +R L + Sbjct: 644 HKSRAAAILGVERSTLDRKIRRYELNE 670 >UniRef50_Q1D217 Sigma-54 dependent DNA-binding reponse regulator CrdA n=7 Tax=Cystobacterineae RepID=Q1D217_MYXXD Length = 498 Score = 484 bits (1248), Expect = e-135, Method: Composition-based stats. Identities = 157/462 (33%), Positives = 228/462 (49%), Gaps = 47/462 (10%) Query: 79 IARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQF 138 + A V D ++PD DGL + ++ + + + +G I ++ Q Sbjct: 41 VVSARPVDAVLMDVKMPD-MDGLTALAKLTELKPELPVIMMSGHGTIDT----AVKATQL 95 Query: 139 DVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLK 198 E + AL N L + ++ + + M+G P M ++ Sbjct: 96 GARDFLEKPIARERLLVALRNVLKHQAAMAELQELRAQ-----LGRYDMVGSGPAMQRIF 150 Query: 199 KEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFG 258 I+ A S+ VLI+GE GTGKEL+A+A+H+ S R P V LNCAA+P + ESELFG Sbjct: 151 SLIQRTAPSEGRVLITGENGTGKELIARALHQHSKRKGQPFVKLNCAAVPHELIESELFG 210 Query: 259 HVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLR 318 H KGAFTGA+S R GKFE+A GTLFLDEIG++ A+QAKLLRVLQ G+++RVG + Sbjct: 211 HEKGAFTGAVSVRRGKFELAHEGTLFLDEIGDMPQAMQAKLLRVLQEGELERVGGAETHK 270 Query: 319 VDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRL 378 VDVRV+AATN++L E+ AGRFR DL++R++V + PPLRER +D+ L F ++ Sbjct: 271 VDVRVVAATNKNLEAEIAAGRFREDLYYRINVVQIHSPPLRERREDLPDLIKTFLDEACA 330 Query: 379 RQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFA--- 435 + G + LS A ++ Y +PGNVREL + + R +L LE Sbjct: 331 KNGRRPLTLSPDALAVMSAYDYPGNVRELRNLVERLAILCEGPIVTRTDALELLPRGRNV 390 Query: 436 ----------------------------------FPEVTLPTPEVAAVPVVKQNLREATE 461 P T P V P + RE E Sbjct: 391 PPPAPVETPASPLPPPSPEAAVVLASSTPAPAIAAPVATEPPAPVGFRPRADRTFREQVE 450 Query: 462 AFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 +RE I+ L+ H N AR+L+ + + ++ K LGL+ Sbjct: 451 DAEREIIQHVLSHTHDNVTEAARLLDLERGHFYKKMKALGLR 492 >UniRef50_C1DXU0 Acetoacetate metabolism regulatory protein AtoC (Ornithine/argininedecarboxylase inhibitor) (Ornithine decarboxylase antizyme) n=8 Tax=Aquificales RepID=C1DXU0_SULAA Length = 451 Score = 484 bits (1248), Expect = e-135, Method: Composition-based stats. Identities = 152/417 (36%), Positives = 245/417 (58%), Gaps = 24/417 (5%) Query: 97 PYDGLIPGQESLKVHACV-------GLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLI 149 D +P E L + + + + +G I + + ++ FD F ++ L Sbjct: 50 FLDVWLPDGEGLDLLPFIKENSPNSSVVMISGHANI-PIAVKAIKEGAFD-FLEKPLSTE 107 Query: 150 AALAAGALSNALLIEQLESQNMLPGDATPFEAV--KQTQMIGLSPGMTQLKKEIEIVAAS 207 +A IE++E Q + F+ KQ ++IG SP + +LK++IE VA + Sbjct: 108 TIMAT--------IEKVEKQIKVKQSLEYFKEKEEKQIEIIGNSPKIVELKRQIEKVAKT 159 Query: 208 DLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGA 267 + V+I GE GTGKELVAK+IH SPR P V +NCAA+P+ + E+E FG+ KGAFT A Sbjct: 160 NAWVMILGENGTGKELVAKSIHYQSPRKDYPFVDINCAAIPDELFEAEFFGYEKGAFTNA 219 Query: 268 ISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAAT 327 + + GK E+AD GTLFLDE+ ++SL+ QAKLLRVL+ R+G + + VD+RV++AT Sbjct: 220 FTRKIGKLELADKGTLFLDEVADMSLSSQAKLLRVLEEKQFSRLGSNTKITVDLRVISAT 279 Query: 328 NRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVL 387 N+D+++EV G FR DL RLSV P+ VPPLRER +D++LLA YF + + + +L Sbjct: 280 NKDIQKEVEKGTFRQDLAFRLSVIPIYVPPLREREEDILLLANYFLRKFSVENKVEPPIL 339 Query: 388 SAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVA 447 S +N +Y++PGNVREL++ + R V+L + ++ + V L E Sbjct: 340 SDEVKNTFLNYNWPGNVRELKNLMERLVILNSESIIYNKDLP---PHMLGNVKLEKEE-- 394 Query: 448 AVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLKD 504 ++P+ + L++A E +++ I++AL ++N A+ L+ D+++L+R K+ L++ Sbjct: 395 SIPITIRPLKDAKEELEKQMIKKALKVYNNNLKEIAKALDIDLSSLYRKIKQYNLEE 451 >UniRef50_P09133 Nif-specific regulatory protein n=18 Tax=Rhizobiales RepID=NIFA_AZOC5 Length = 615 Score = 484 bits (1247), Expect = e-135, Method: Composition-based stats. Identities = 163/510 (31%), Positives = 247/510 (48%), Gaps = 63/510 (12%) Query: 54 LAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDP--YDGLIPGQESLKVH 111 +A G ++ G+ A ++ I + + P ++ L E V Sbjct: 103 VATTGWTPEMAGQIRAHVPQKAIDQIVATQMPLVVQDVTADPLFAGHEDLFGPPEEATV- 161 Query: 112 ACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAA----------------- 154 + +G+P+ A +++G L++D + DE++R + +A Sbjct: 162 SFIGVPIKADHHVMGTLSIDRIWDGTARFRFDEDVRFLTMVANLVGQTVRLHKLVASDRD 221 Query: 155 GALSNALLIEQLESQNMLPGDATPFEAVKQT--QMIGLSPGMTQLKKEIEIVAASDLNVL 212 ++ +E+ + + EA + ++G SP + +L ++VA S+ VL Sbjct: 222 RLIAQTHRLEKALREEKSGAEPEVAEAANGSAMGIVGDSPLVKRLIATAQVVARSNSTVL 281 Query: 213 ISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRS 272 + GE+GTGKEL A+AIHE SPR P V +NCAALPESV ESELFGH KGAFTGA++ R Sbjct: 282 LRGESGTGKELFARAIHELSPRKGKPFVKVNCAALPESVLESELFGHEKGAFTGALNMRQ 341 Query: 273 GKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLR 332 G+FE+A GTLFLDEIGE++ A QAKLLRVLQ G+ +RVG +R L+VDVR++ ATN++L Sbjct: 342 GRFELAHGGTLFLDEIGEITPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVCATNKNLE 401 Query: 333 EEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGAR 392 E V G FRADL++R+ V PL +PPLRER D+ LA F ++ L + LSA A Sbjct: 402 EAVSKGEFRADLYYRIHVVPLILPPLRERPGDIPKLAKNFLDRFNKENKLHMM-LSAPAI 460 Query: 393 NLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVIL----EAQHFAFPEVTLPTPEVAA 448 ++L+ FPGNVRELE+ I R LA + + + P P + Sbjct: 461 DVLRRCYFPGNVRELENCIRRTATLAHDAVITPHDFACDSGQCLSAMLWKGSAPKPVMPH 520 Query: 449 V------------------------------------PVVKQNLREATEAFQRETIRQAL 472 V P + ++E + QA+ Sbjct: 521 VPPAPTPLTPLSPAPLATAAPAAASPAPAADSLPVTCPGTEACPAVPPRQSEKEQLLQAM 580 Query: 473 AQNHHNWAACARMLETDVANLHRLAKRLGL 502 ++ A AR+L + ++ + Sbjct: 581 ERSGWVQAKAARLLNLTPRQVGYALRKYDI 610 >UniRef50_Q0EZK3 Response regulator of hydrogenase 3 activity (Sensor HydH) n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EZK3_9PROT Length = 463 Score = 484 bits (1247), Expect = e-135, Method: Composition-based stats. Identities = 159/475 (33%), Positives = 250/475 (52%), Gaps = 22/475 (4%) Query: 36 LECDASALLRYDSRQFIPLAIDGLAKDVLGRRF---ALEGHPRLEAIARAGDVVRFPADS 92 ++ A LL D+ F + L + + F A+ R G D Sbjct: 1 MKQSAFILLVEDNEDFRLI----LQEALERSGFHVTAVANAMRAREAMTLGKFDLSLLDV 56 Query: 93 ELPDPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDV----FSDEELRL 148 LPD +G+ +E +G+ + G + +D ++ D F +E+ + Sbjct: 57 RLPDG-NGIELMREFRHSDPDMGIIIMTGYAEVDT-AVDAVRLGANDFLKKPFDIDEMLV 114 Query: 149 IAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASD 208 + + Q+++ N + + + T +IG P + +L + + ++A SD Sbjct: 115 -------RIDELIKTRQIKADNKNLRELVRSQD-QNTGLIGQCPAIQKLTETVSLLANSD 166 Query: 209 LNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAI 268 VLI+GE+G GKE++AKA+H++ R+ PLV +NC A+PE + ESELFGHVKGAFTGA+ Sbjct: 167 STVLITGESGCGKEVLAKALHKSGSRSGKPLVSINCGAIPEELLESELFGHVKGAFTGAV 226 Query: 269 SNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATN 328 R G+FE+A+ GT+FLDEIG++S LQ KLLRVLQ + VG + + VDVRV+AAT+ Sbjct: 227 RARPGRFEIANGGTIFLDEIGDMSAKLQVKLLRVLQERCFEPVGSQQSIHVDVRVIAATH 286 Query: 329 RDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLS 388 RDL E+ AGRFR DL++RL+V PL++PPLRERGDD++LL +F + ++ +S Sbjct: 287 RDLEAEIAAGRFREDLYYRLNVIPLTLPPLRERGDDILLLTDHFITRFNQQKKADITGVS 346 Query: 389 AGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAA 448 + ++ +Y +PGNVREL++ I R L R E L ++ + E L + + Sbjct: 347 DEVKRIILNYQWPGNVRELQNLIERVTTLKRHGIMELED-LPSRMISDKERVLQSFRMDV 405 Query: 449 VPVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 +L+ + F+ I AL + N A L + L K+ GL+ Sbjct: 406 ENAECIDLKSTVDEFESHLILSALQRFQWNKNQAANFLAMNRTTLVEKIKKKGLQ 460 >UniRef50_A3ESE7 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Leptospirillum sp. Group II RepID=A3ESE7_9BACT Length = 473 Score = 484 bits (1247), Expect = e-135, Method: Composition-based stats. Identities = 142/322 (44%), Positives = 198/322 (61%), Gaps = 8/322 (2%) Query: 181 AVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLV 240 ++IG S M +L + ++A S VLI GE+GTGKELVA A+HE SPR P V Sbjct: 159 RYSFGRIIGRSEKMQELFDLLPVIAQSKSTVLIEGESGTGKELVAHALHENSPRREGPFV 218 Query: 241 YLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLL 300 LNCAAL E V ESELFGHVKGAFTGA+ +R G+FE+A GTLFLDEIGE+S ++Q KLL Sbjct: 219 KLNCAALSEGVLESELFGHVKGAFTGAVQSRPGRFELASGGTLFLDEIGEISPSMQVKLL 278 Query: 301 RVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRE 360 RVLQ + +RVG + ++VDVRV+AATNRDL++ + G FR DL++RL V P+++PPLRE Sbjct: 279 RVLQEEEFERVGGTKTVKVDVRVIAATNRDLKQAMEEGSFRKDLYYRLRVIPVTLPPLRE 338 Query: 361 RGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARA 420 R D+ LL F E+ G + L++ A +L +Y +PGN+REL++ I A +L Sbjct: 339 RQGDLPLLIQSFIERYNAELGKNIQGLTSEAMKVLLNYHYPGNIRELQNIIEHAALLCND 398 Query: 421 TRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWA 480 +R ++ +H P LP ++ + ++E IR A+A++ N + Sbjct: 399 SR------IDLRHL--PGDLLPAQSQSSFLELAMMEENPVRYVEKELIRLAMAESGGNVS 450 Query: 481 ACARMLETDVANLHRLAKRLGL 502 AR L + L R K + L Sbjct: 451 EVARKLSMGRSTLWRRLKEMKL 472 >UniRef50_C2KAU4 Sigma-54-dependent transcriptional regulator n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=C2KAU4_9FLAO Length = 519 Score = 484 bits (1247), Expect = e-135, Method: Composition-based stats. Identities = 138/433 (31%), Positives = 222/433 (51%), Gaps = 25/433 (5%) Query: 80 ARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFD 139 + +++ F P P +++ +GLP + L L D Sbjct: 94 LDSAELLLFDLKELSPLPSCFTKAKNSGMRMAVGLGLPAVSESKN--VLFLFYKSFISRD 151 Query: 140 VFSDEELRLIAALAAGALSNALLIEQLESQNMLPGD------ATPFEAVKQTQMIGLSPG 193 + L I+ + N + EQL++ D ++G S Sbjct: 152 TIPERILNGISTQLSITFHNIDVQEQLKTFQGNIRDFPKEVKEEKKSEHGFHGIVGQSEA 211 Query: 194 MTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAE 253 M + ++I VA S NV+I GETGTGKEL+A+A+HE S + ++ +NCAA+P ++ E Sbjct: 212 MQFIFEQITQVAPSQSNVIIFGETGTGKELIAQAVHELSEFSGKKMIRINCAAIPANLIE 271 Query: 254 SELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGD 313 SELFGH KG+FTGA R GKFE A N T+FLDEIGEL L LQA+LLRVLQ +I+R+G Sbjct: 272 SELFGHEKGSFTGATEQRKGKFEQAHNSTIFLDEIGELPLELQARLLRVLQEKEIERIGG 331 Query: 314 DRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFC 373 ++ ++V+ R++ ATNR+L +EV GRFR DL++RL+VFP+ +PPLRER +D+ LLA YF Sbjct: 332 NKRIKVNARIITATNRNLEKEVAEGRFRLDLYYRLNVFPIELPPLRERKEDIPLLADYFL 391 Query: 374 EQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQH 433 E+ + G S ++ + GN+RELE+ + R+++ A+ + + + Sbjct: 392 EKLYPKTGKKINGFSQNVVKMMMANPWLGNIRELENMVERSMLTAKGDIIREMDFPKVIN 451 Query: 434 FAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNW---AACARMLETDV 490 + + + + F++E I + + + + A++L Sbjct: 452 YQNTDQEVQVK--------------TLQEFEKEYILKIIKKCNGRIFGEIGAAKLLGLPP 497 Query: 491 ANLHRLAKRLGLK 503 L ++LG++ Sbjct: 498 TTLISKMQKLGIE 510 >UniRef50_B8FB78 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FB78_DESAA Length = 1036 Score = 484 bits (1247), Expect = e-135, Method: Composition-based stats. Identities = 163/513 (31%), Positives = 243/513 (47%), Gaps = 33/513 (6%) Query: 5 VDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIP----LAIDGLA 60 + + ++ ++ ++ +++T+ Q+ + A+ + P A L Sbjct: 541 LSGIYSLGNDMASVQDGKELLHSILSTVNQLTGAERGAIFVANEDPHGPPMKLRASRNLT 600 Query: 61 KDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFA 120 D + R A E RL A + V + + P + G + + P+ Sbjct: 601 ADQVERP-AFEPSMRLIQQAASLGVDKKSFIRKESAPPEEWSAGSSE-AARSSICAPIIF 658 Query: 121 GQNLIGALTLD-GMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPF 179 +G L D + F E L AA AA AL NA E++E Sbjct: 659 KGKTLGVLYHDNRLLNSAFKESDFELLSFFAAQAAAALDNANAQEEIERLKRAMAQGGRI 718 Query: 180 EAV------KQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASP 233 ++ ++IG S + ++ IE VA + NVLI GETG GKEL A A+H S Sbjct: 719 QSRPSFSRENYKEVIGKSQAVRKMLHLIEQVAKTGSNVLILGETGVGKELAANAVHYHSK 778 Query: 234 RAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSL 293 R V NC+AL E++ SELFGH KGAFTGA S R G+FE+AD GT+FLDEIG+L L Sbjct: 779 RRGKAFVKANCSALTETLINSELFGHEKGAFTGASSRRIGRFELADKGTIFLDEIGDLPL 838 Query: 294 ALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPL 353 +QA LLRVLQ + +RVG + +R D R++AATNRDL +FR DL++RL+VFP+ Sbjct: 839 DVQANLLRVLQSSEFERVGGNETIRSDFRLIAATNRDLERLAADKKFRQDLYYRLNVFPI 898 Query: 354 SVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHR 413 VPPLR+R +D+ LLA F + + +S N L Y +PGN+REL + I R Sbjct: 899 LVPPLRDRKEDIPLLAEQFIRGFAQKMQIEVKKISREEMNKLLKYHWPGNIRELANVIER 958 Query: 414 AVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALA 473 ++L+ F P++ T + + + E +R I AL Sbjct: 959 GMILSSGPL-----------FTAPDLEGQTDGHS------LHRPHSLEENERSHILWALE 1001 Query: 474 QNHHNW---AACARMLETDVANLHRLAKRLGLK 503 Q + A L+ + + L K+LG+K Sbjct: 1002 QKNWKVRGPGGVAEFLDINPSTLAARMKKLGIK 1034 >UniRef50_A6C332 Two component, sigma54 specific, transcriptional regulator, Fis family protein n=2 Tax=Bacteria RepID=A6C332_9PLAN Length = 1035 Score = 484 bits (1247), Expect = e-135, Method: Composition-based stats. Identities = 144/392 (36%), Positives = 214/392 (54%), Gaps = 17/392 (4%) Query: 128 LTLDGMQPDQFDVFSDEELRLIAALAAGALSN-ALLIEQLESQNMLPGDATPFEAVKQTQ 186 + L + Q +EE+R+ ++L +L + + +TP V++ Sbjct: 643 IALHSTKIHQDLRRLNEEMRIKVEKIDDQRRLVSVLQSELTNSQEIAERSTPAHDVQRGM 702 Query: 187 MIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAA 246 + G SP + + + + VA S+ VL+ GE+GTGKEL+A+A+HE S R PLV +NCAA Sbjct: 703 IKGNSPAIRSVMETVRKVANSESTVLVRGESGTGKELLAQAVHENSSRHEKPLVRVNCAA 762 Query: 247 LPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYG 306 L S+ ESELFGHVKGAFTGA +R G+FE+A+ GTLFLDEIG++SL Q KLLRVLQ Sbjct: 763 LSPSLLESELFGHVKGAFTGAHEDRVGRFELANGGTLFLDEIGDISLDTQVKLLRVLQER 822 Query: 307 DIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVI 366 +RVG L VDVR++ AT+++L + + G FR DL++RL+V +++PPLRER +D+ Sbjct: 823 AFERVGGSETLHVDVRLITATHQNLEQRITEGLFREDLYYRLNVISITLPPLRERREDIF 882 Query: 367 LLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDE 426 LA YF ++ R G + A L+ +PGN+R+LE+ I RAVVLA + + Sbjct: 883 ELAFYFLKRTANRLGKRISHIDPDAIEALERAPWPGNIRQLENVIERAVVLAESEVITMK 942 Query: 427 VI---LEAQHFAFPEVTLPTPEVAAVPVVKQNLREA-------------TEAFQRETIRQ 470 + L Q P T V + + L E + E ++ Sbjct: 943 DLPADLLEQKKRLPARVFETKNVRSDTTRRIPLSEVEVITFPGSQNHVDQRLTEPEQLKL 1002 Query: 471 ALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 ALA+ N A AR+L + + K+ + Sbjct: 1003 ALAECDGNKAQAARLLGMPRSTYYSKLKKYDI 1034 >UniRef50_Q1ZUC7 Formate hydrogenlyase transcriptional activator n=4 Tax=Vibrionaceae RepID=Q1ZUC7_PHOAS Length = 717 Score = 484 bits (1246), Expect = e-135, Method: Composition-based stats. Identities = 152/516 (29%), Positives = 240/516 (46%), Gaps = 24/516 (4%) Query: 6 DVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLAKDVLG 65 VL ++ + ++ L+ L Q + ++++ + + + ++ Sbjct: 198 QVLVDVTNTVISQSTKKELIGSLLRFLYQHFDMTDLSIIQLQDGHYNQHSACFINNEIDY 257 Query: 66 R-RFALEGHPRLEAIARAGDVVRFPADS---ELPDPYDGLIPGQESLKVHACVGLPLFAG 121 + F AI + V A D P +V +PL Sbjct: 258 QCHFFTNDKLIKNAI-KNNKPVFLNAIDIKKMQADNNSPYFPS----RVKTACVMPLVFR 312 Query: 122 QNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPG----DAT 177 +G ++ + E + IAA A A+ + + + D Sbjct: 313 GIAVGYISFMKPIEAPYQNTDLELFKQIAARVALAMHSIKTHQASTPNQPITKFVNIDEG 372 Query: 178 PFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVN 237 E V +I S M ++ +++ +VA+ D VLI GE+GTGKEL+A+AIH+ S R+ Sbjct: 373 MGEHVIFDDIISQSEVMNKVLEQVALVASCDSTVLILGESGTGKELIARAIHKLSLRSKT 432 Query: 238 PLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQA 297 +V +NCAA+P + ESELFGH +GAFTGAIS R G+FE A GTLFLDEIG++ L LQ Sbjct: 433 DMVKMNCAAIPAGLFESELFGHERGAFTGAISQRVGRFEQAHKGTLFLDEIGDMPLELQP 492 Query: 298 KLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPP 357 KLLR LQ +I+RVG + + VDVR++ ATN DL V +FR DL++RL+VFP+ +PP Sbjct: 493 KLLRALQENEIERVGKNALISVDVRIVVATNVDLLRRVEEKKFRNDLYYRLNVFPIQIPP 552 Query: 358 LRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVL 417 LRER +D+ LL +F + + G + ++A ++ + +PGNVREL + + R+V+L Sbjct: 553 LRERAEDIPLLVKHFTRELAKKMGKTITAIAAEDLAVMSVFPWPGNVRELRNFVERSVIL 612 Query: 418 ARA---TRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETI-----R 469 R E+ + P +P A V+ + I Sbjct: 613 TRGNVLNVPVHELKAVSHSACVPTEKVPPVNPEAAGVINTPEPAVKGDVVKPIIDKADVI 672 Query: 470 QALAQNHHNWA---ACARMLETDVANLHRLAKRLGL 502 +AL H A A L L +++G+ Sbjct: 673 KALKACHGVVAGPNGAANQLGLKRTTLLSRMQKMGI 708 >UniRef50_Q2IQM1 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Myxococcales RepID=Q2IQM1_ANADE Length = 485 Score = 484 bits (1246), Expect = e-135, Method: Composition-based stats. Identities = 146/425 (34%), Positives = 215/425 (50%), Gaps = 19/425 (4%) Query: 78 AIARAGDVVRFPADSELP--DPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQP 135 A+ AD +P D + L +E V + FA ++ M+ Sbjct: 50 ALLPGFAPAAVLADVRMPRMDGINLLRRAREQGSDAVFVMMTAFASVEA----AVEAMRA 105 Query: 136 DQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMT 195 + L L AL +L+ + E + ++G +P + Sbjct: 106 GAENYLVK---PLDVNAVLVVLEKALEKLRLQRDTANLRERVR-ERYRFHNIVGDAPELH 161 Query: 196 QLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESE 255 + + ++ A + VLI GE+GTGKEL A+A+HE SPRA + +NCAAL E++ ESE Sbjct: 162 AVYEVVKRAAPTRATVLILGESGTGKELFAQALHEESPRADKAFIKVNCAALSETLLESE 221 Query: 256 LFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDR 315 LFGH KGAFTGAI + G+FE+AD GTLFLDEIG++S ALQ KLLRVLQ + +RVG + Sbjct: 222 LFGHEKGAFTGAIGRKEGRFELADGGTLFLDEIGDISPALQIKLLRVLQQREFERVGGTQ 281 Query: 316 CLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQ 375 L+VDVR++AATNRDL EV GRFR DL++RL+V +++PPLR+R D+ L +F ++ Sbjct: 282 TLKVDVRLVAATNRDLAAEVKNGRFREDLYYRLNVVAVTLPPLRQRKGDIPALVSHFIDK 341 Query: 376 CRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFA 435 G L+ G N + + +PGNVRELE+ + RAVVL + + + + Sbjct: 342 YSKAYGKDIRGLAPGTLNAVLSHDWPGNVRELENVVERAVVLCKGSELTADDLPPTLRGP 401 Query: 436 FPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHR 495 P P + + +RE I + L + + A +L V + Sbjct: 402 RPRERAPGALIPGATLY---------EIEREAILRTLEMVGGSTSRAAEILGISVRKIQY 452 Query: 496 LAKRL 500 K Sbjct: 453 RLKEY 457 >UniRef50_P05407 Nif-specific regulatory protein n=11 Tax=Rhizobiales RepID=NIFA_BRAJA Length = 582 Score = 483 bits (1245), Expect = e-135, Method: Composition-based stats. Identities = 176/551 (31%), Positives = 260/551 (47%), Gaps = 51/551 (9%) Query: 3 FSVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAID-GLAK 61 ++ + I+ L + ++ L+ ++ + ++ L + G ++ Sbjct: 29 SALAGIYEISKILNAPGRLEVTLANVLGLLQSFVQMRHGLVSLFNDDGVPELTVGAGWSE 88 Query: 62 DVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDP--YDGLIPGQESLKVHACVGLPLF 119 R + I G + + D + G A +G+P+ Sbjct: 89 GTDERYRTCVPQKAIHEIVATGRSLMVENVAAETAFSAADREVLGASDSIPVAFIGVPIR 148 Query: 120 AGQNLIGALTLDGMQPDQFDV--FSDEELRLIAALAAGALSNALLI-----------EQL 166 ++G LT+D + + + L ++A + + L ++L Sbjct: 149 VDSTVVGTLTIDRIPEGSSSLLEYDARLLAMVANVIGQTIKLHRLFAGDREQSLVDKDRL 208 Query: 167 ESQNMLPGD-ATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVA 225 E Q + G A + ++ +IG SP ++ L ++I +VA S+ VL+ GE+GTGKELVA Sbjct: 209 EKQTVDRGPPARERKQLQAHGIIGDSPALSALLEKIVVVARSNSTVLLRGESGTGKELVA 268 Query: 226 KAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFL 285 KAIHE+S RA P V LNCAALPE+V ESELFGH KGAFTGA+S R G+FE+AD GTLFL Sbjct: 269 KAIHESSVRAKRPFVKLNCAALPETVLESELFGHEKGAFTGAVSARKGRFELADKGTLFL 328 Query: 286 DEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLF 345 DEIGE+S QAKLLRVLQ + +RVG + ++VDVRV+AATNR+L E V FRADL+ Sbjct: 329 DEIGEISPPFQAKLLRVLQEQEFERVGSNHTIKVDVRVIAATNRNLEEAVARSEFRADLY 388 Query: 346 HRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVR 405 +R+SV PL +PPLRER D+ LLA F + G S + L A A ++L FPGNVR Sbjct: 389 YRISVVPLLLPPLRERRSDIPLLAREFLRKFNSENGRS-LTLEASAIDVLMSCKFPGNVR 447 Query: 406 ELEHAIHRAVVLARATRS-----------------------GDEVILEAQHFAFPEVTLP 442 ELE+ I R L+ T G + +P Sbjct: 448 ELENCIERTATLSAGTSIVRSDFACSQGQCLSTTLWKSTSYGKTDPAAPMQPVPAKSIIP 507 Query: 443 TPEVAAVP----------VVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVAN 492 E A P L RE + A+ ++ A AR+L Sbjct: 508 LAETAPPPQAVCEPGSLAPSGTVLVSGARMADRERVVAAMEKSGWVQAKAARLLGLTPRQ 567 Query: 493 LHRLAKRLGLK 503 + ++ G++ Sbjct: 568 VGYALRKYGIE 578 >UniRef50_P30667 Nif-specific regulatory protein n=6 Tax=Bacteria RepID=NIFA_AZOBR Length = 625 Score = 483 bits (1245), Expect = e-135, Method: Composition-based stats. Identities = 143/436 (32%), Positives = 225/436 (51%), Gaps = 10/436 (2%) Query: 2 SFSVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASAL-LRYDSRQFIPLAIDGLA 60 + + + ++ L + Q + ++ L L+ + L + +A +GL+ Sbjct: 11 NLELLTIYEVSKILGSSLDLQQTLREVLRALAYQLQMHRGRVYLVGEDNVLRLVAANGLS 70 Query: 61 KDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQE-SLKVHACVGLPLF 119 + + +G I + G P +E P + ++ +V + VG+P+ Sbjct: 71 NEAAAQIEFRDGEGITGRILKTGMPAVVPNLAEEPLFLNRTGGREDLDEQVASLVGVPIK 130 Query: 120 AGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLP------ 173 A ++G LT+D + + ++R + +A L + + Sbjct: 131 AAGVVVGVLTIDRISDEGPQGHFGSDVRFLTMVANLIGQTVRLHRTVAEERRFMMRETFR 190 Query: 174 -GDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEAS 232 A ++ SP M ++ ++ VA VLI GE+GTGKEL+A+AIH S Sbjct: 191 MQKELRPVAAPINDVVCTSPNMLEVMAQVHRVAPFKSTVLIRGESGTGKELIARAIHNMS 250 Query: 233 PRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELS 292 PR P + +NCAALPES+ ESELFGH KGAFTGA + G+FE+A GTLFLDEIG++S Sbjct: 251 PRKDAPFIRVNCAALPESLLESELFGHEKGAFTGAQKDHKGRFELASGGTLFLDEIGDIS 310 Query: 293 LALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFP 352 QAKLLRVLQ + +RVG + ++ DVR++ ATN +L E V G+FRADL+ R++V Sbjct: 311 PNFQAKLLRVLQEQEFERVGGSKTIKTDVRLICATNLNLEEAVGHGKFRADLYFRINVVT 370 Query: 353 LSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIH 412 + +PPLRER D+ LA +F + G++ +V+ A +L ++PGNVRELE+ I Sbjct: 371 IHLPPLRERRQDIGPLARHFVAKFAKDNGMA-LVMEDEALEVLNRCTWPGNVRELENCIE 429 Query: 413 RAVVLARATRSGDEVI 428 RA +R E + Sbjct: 430 RAATQSRDGIIRTESL 445 Score = 44.3 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 6/39 (15%), Positives = 16/39 (41%) Query: 465 RETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 R+ + A+ + A AR+L + ++ ++ Sbjct: 583 RDRLLWAMERTGWVQAKAARLLGMTTRQVSYALRKYNIE 621 >UniRef50_B5ZJF6 Transcriptional regulator, NifA, Fis Family n=4 Tax=Gluconacetobacter diazotrophicus RepID=B5ZJF6_GLUDA Length = 581 Score = 483 bits (1245), Expect = e-135, Method: Composition-based stats. Identities = 172/533 (32%), Positives = 251/533 (47%), Gaps = 61/533 (11%) Query: 28 LITTLRQVLECDASALLRYDSRQFIPLAIDGLAKDVLGRRFALE-GHPRLEAIARAGDVV 86 ++ L ++ + + + +D+ + I A D RR+ + IA + + Sbjct: 47 VLAVLESFVDLNNAVVALFDAAGNVETIIGTEADDAAARRYFDSIPEQAVGQIAVSRQPL 106 Query: 87 RFPADSELPDPYDGLIPGQE---SLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSD 143 P + D G Q +G+P+ + L+G + LD + V Sbjct: 107 LVPDVTG--DTRYGFATSQAWTVGAGRIGVIGVPILSRDRLVGVMLLDRPAIPEESVVGS 164 Query: 144 EELRLIAALAAGALSNALLIE--QLESQNMLPGDATPFEAV------KQTQMIGLSPGMT 195 ++ L++ +A L Q + +N+L A ++G SP + Sbjct: 165 MDVCLLSMVAGLMGQMVRLHRLVQRDRENLLHDSGLAQPAAPVADGGGYMGIVGDSPALR 224 Query: 196 QLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESE 255 + +++EIVA SD+ VL+ GE+GTGKEL A+AIH+ASPR P V LNCAALPESV ESE Sbjct: 225 AVLQKVEIVARSDVTVLLRGESGTGKELFAQAIHQASPRHRKPFVKLNCAALPESVLESE 284 Query: 256 LFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDR 315 LFGH KGAFTGAI R G+FE+AD GTLF+DEIGE+S + QAKLLRVLQ G+ +RVG R Sbjct: 285 LFGHEKGAFTGAIGQRKGRFELADGGTLFMDEIGEISPSFQAKLLRVLQEGEFERVGGTR 344 Query: 316 CLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQ 375 L+VDVRV+ ATNR+L E V GRFRADL++RLSV P+ +PPLR+R D+ +LA F + Sbjct: 345 TLKVDVRVVTATNRNLEEAVSKGRFRADLYYRLSVIPIFLPPLRDRPTDIPMLANEFLRR 404 Query: 376 CRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFA 435 + + +++ ++L FPGNVRELE+ I R LA G Sbjct: 405 FN-ETNRTSLTIASDGMDVLTTCYFPGNVRELENCIRRTATLAPGQTIGAADFACRSDGC 463 Query: 436 ----FPEVTLPTPEVAAVPVVKQNLREATEAFQ--------------------------- 464 F P P P + A + Sbjct: 464 LSSIFWRPAAPAPGPGRHPAASDVAGDTGAATELPVLPAPRSSSQSSPQSSAAPDPATCP 523 Query: 465 ---------------RETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 R+ + +A+ A AR+L + ++ G+ Sbjct: 524 SSAVCSAAQGEWSPQRDELLEAMETAGWVQAKAARILGLTPRQIGYALRKNGI 576 >UniRef50_A8ZZC1 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZZC1_DESOH Length = 926 Score = 483 bits (1243), Expect = e-135, Method: Composition-based stats. Identities = 161/503 (32%), Positives = 233/503 (46%), Gaps = 33/503 (6%) Query: 8 LANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLAKDVLGRR 67 +I EL G F RL+ + + AL + A+ Sbjct: 447 FIDIISELMPGPAPDRLFTRLVQATNRYFGAERGALFWFSDTPKQTPALRAACNLTETEI 506 Query: 68 FALEGHPRLEAIA---RAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFAGQNL 124 F+ L + R G + DPY + A + LP Sbjct: 507 FSNAFRSNLALVFDAWREGRSILVRRGDRSDDPY----------REKAILCLPFQIEGKP 556 Query: 125 IGALTLDGMQ-PDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVK 183 G L D D F+ +L + + +A + + + + P A P Sbjct: 557 RGVLYHDNAYVTDCFNFLDPAQLNRLVHTLGSYIEHAWDLSR-GFEKLRPPLAVPSTVTG 615 Query: 184 QTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLN 243 +++G S + + +++ VA +D VLI GETG GKELVA+ IH+ S R PL+ ++ Sbjct: 616 TVEIVGESSRIKAVLTQVDQVAPTDSTVLILGETGVGKELVARRIHQQSRRCDMPLIVVD 675 Query: 244 CAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVL 303 A+PE + ESELFGH KGAFTGA + G E+A GTLF+DE+GE+ ++Q KLLR L Sbjct: 676 PTAIPEGLVESELFGHEKGAFTGADRQKKGLLELAHQGTLFIDEVGEIPKSIQVKLLRAL 735 Query: 304 QYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGD 363 Q IQR+G + L D R++AATNRDL +V AGRFR DL++RL+V P++VPPLRER Sbjct: 736 QEKTIQRLGGTKPLFSDFRLIAATNRDLAGQVAAGRFREDLYYRLNVIPITVPPLRERKQ 795 Query: 364 DVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRS 423 D++LLA F + LR +VLS + L Y +PGNVRELE+ I R V+L+ Sbjct: 796 DIVLLAACFLRRHSLRHNRPAMVLSPEVQQRLCAYPWPGNVRELENVIERGVLLSTGDHL 855 Query: 424 GDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWA--- 480 E+ LP +L + QR I L + A Sbjct: 856 --------------ELDLPAGHTRPGADPFTDL-PTLDELQRRYIHHVLEKTGGKIAGPD 900 Query: 481 ACARMLETDVANLHRLAKRLGLK 503 A++L +L+ KRL ++ Sbjct: 901 GAAKILGMKRTSLYNRMKRLNVR 923 >UniRef50_B8DJ70 Sigma54 specific transcriptional regulator, Fis family n=5 Tax=Desulfovibrio RepID=B8DJ70_DESVM Length = 601 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 167/482 (34%), Positives = 236/482 (48%), Gaps = 51/482 (10%) Query: 68 FALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFAGQNLIGA 127 P + +A G+ + + P + +HA PL N+IG Sbjct: 123 MVPLSEPLVGQVALRGEPTWAASPEDWARPAWAV-----DESIHAYAAYPLQFKGNMIGV 177 Query: 128 LTLDGMQPDQFDVFSDEEL-----RLIAALAAGALSNALLIEQLESQNMLPGDATPF--- 179 + + +P + + L ++ A + A+ NA E+++ Sbjct: 178 MAVFYDRPMRGVLADLMLLHRKMHKIFADSLSAAVVNARSFEEIQHLRRALELENEHLRG 237 Query: 180 ---EAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAV 236 A ++G SP + + +++++VA +D VL+ GE+GTGKELVA+AIH+ S RA Sbjct: 238 EVRRARAPHSIVGDSPPLRRALEQVDMVAPTDATVLLLGESGTGKELVAQAIHDRSQRAA 297 Query: 237 NPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQ 296 PLV +NC+A+P + ESE FGHVKGAFTGA+ +R G+F++AD GTLFLDE+GE+ L LQ Sbjct: 298 APLVRVNCSAIPRELFESEFFGHVKGAFTGALRDRVGRFQLADGGTLFLDEVGEIPLELQ 357 Query: 297 AKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVP 356 KLLRVLQ G +RVG++R VDVR++AATNRDLR +V GRFR DLF RLSVFP+++P Sbjct: 358 GKLLRVLQEGVFERVGEERSRSVDVRIIAATNRDLRADVEHGRFRQDLFFRLSVFPVALP 417 Query: 357 PLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVV 416 PLR R DD+ LLA +F R L ++ LQ Y +PGNVREL++ I R V+ Sbjct: 418 PLRARRDDIPLLARHFVRASCRRLNLPEPRIAHRQMAELQSYPWPGNVRELQNVIERGVI 477 Query: 417 LARATRSGDEVILEA--------QHFAFPEVTLPTPEVAA-------------------- 448 +A R ++ E F P P A Sbjct: 478 MAEGGRLVLDLPPEGGMQAVSPGAAFGMPGGASPVEGGGAHDAPWGTGETGSAGKTADFG 537 Query: 449 ---VPVVKQNLREATE-AFQRETIRQALAQNHHNW---AACARMLETDVANLHRLAKRLG 501 P + EA QR I +AL A +L L K LG Sbjct: 538 QTGAPDPAGIISEAHWRELQRANIERALTAAGGRVHGPGGAAELLGLPPTTLQSRMKTLG 597 Query: 502 LK 503 L+ Sbjct: 598 LR 599 >UniRef50_UPI00016C5695 DNA-binding protein Fis / transcriptional regulator, Fis family n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C5695 Length = 635 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 146/345 (42%), Positives = 200/345 (57%), Gaps = 17/345 (4%) Query: 161 LLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTG 220 +L+ QN+ + A +++G SP + + + + VA +D VLI+GETGTG Sbjct: 301 REQARLQQQNVYLQEELKA-AHNFDEIVGQSPALVSVLQRVSKVAGTDSTVLITGETGTG 359 Query: 221 KELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADN 280 KELVA+A+H ASPR PL+ LNCAALP + ESELFGH KGAFTGA++ + G+FE+AD Sbjct: 360 KELVARAVHSASPRKAKPLIKLNCAALPTHLVESELFGHEKGAFTGAVARKPGRFELADG 419 Query: 281 GTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRF 340 GTLFLDE+GELSL QAKLLRVLQ + +RVG ++VDVRV+AATNRDL + V G F Sbjct: 420 GTLFLDEVGELSLEAQAKLLRVLQEREFERVGGTAPVKVDVRVIAATNRDLAQLVKEGAF 479 Query: 341 RADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSF 400 RADL +RL+VFP+ +P LRER D+ LL +F + R G +S + L Y + Sbjct: 480 RADLLYRLNVFPVRLPALRERPGDIPLLVRFFVTKFAGRLGKRIERVSGDTLDALVGYDW 539 Query: 401 PGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREAT 460 PGN+RELE+ I RA +L+ G E++++ P ++ Sbjct: 540 PGNIRELENVIERAAILSD----GPELVIDPDVL---------PVTRGGAAPAGAGGQSL 586 Query: 461 EAFQRETIRQALAQNHHNW---AACARMLETDVANLHRLAKRLGL 502 A + + IR LAQ A +L L K+LG+ Sbjct: 587 VAVEADHIRSVLAQTGWVIEGPNGAATVLGLHPNTLRSRMKKLGI 631 >UniRef50_Q39SU6 Two component, sigma54 specific, transcriptional regulator, Fis family n=10 Tax=Bacteria RepID=Q39SU6_GEOMG Length = 461 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 148/425 (34%), Positives = 229/425 (53%), Gaps = 16/425 (3%) Query: 78 AIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQ 137 + G D ++P + + + V + + A + A ++ M+ Sbjct: 46 RLFEDGAPTLVVTDLKMPGMGGFQLLREVKERFPDTVVIVITAFGAVEAA--VEAMKAGA 103 Query: 138 FDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQL 197 +D + R + AL ++ L +N + ++ +IG+SP M ++ Sbjct: 104 YDFITKPFNR---EALKLTVRKALDMQGLSRENRRLREELSEREEFRS-IIGISPPMEEV 159 Query: 198 KKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELF 257 + I+ VA +D VLI+GE+GTGKELVA+AIH S R P V +NCAA+P + ESELF Sbjct: 160 FRVIDRVADTDATVLITGESGTGKELVARAIHNRSSRRAAPFVAINCAAIPRDLLESELF 219 Query: 258 GHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCL 317 GHVKGAFTGA+ ++ GKF A+ GTLFLDE+GEL + LQ+KLLR LQ ++Q VG + Sbjct: 220 GHVKGAFTGAVQDKEGKFRQAEAGTLFLDEVGELPVELQSKLLRALQEKEVQPVGGAHTI 279 Query: 318 RVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCR 377 ++DVRV+AATN DL E + GRFR DLF+RLSV P+ +PPLRER +D+ LL +F Sbjct: 280 KLDVRVVAATNADLEEAIAEGRFREDLFYRLSVIPVHLPPLRERKEDIPLLVRHF----A 335 Query: 378 LRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFP 437 + G + V S ++ Y +PGNVRELE+ + R +++ R+ D + + Sbjct: 336 AKHGGASVTFSPEILAVMAAYGWPGNVRELENTVERILIM----RNADTIHPDDLPEKVR 391 Query: 438 EVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLA 497 P E + + + + E +RE + +AL +N+ N ++ AR L L Sbjct: 392 RGRSPQRECRVINLPDEGY--SLEQLEREIVVEALERNNWNQSSAARFLRIPRHTLIYRM 449 Query: 498 KRLGL 502 ++ + Sbjct: 450 EKYSI 454 >UniRef50_C8W252 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W252_DESAS Length = 591 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 141/392 (35%), Positives = 214/392 (54%), Gaps = 27/392 (6%) Query: 113 CVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNML 172 + P+ +IGA++ +++ +++A + + + Sbjct: 225 VMRYPINKDGRIIGAVS-----------------KVMFRDVNQFITSAKTVYSSQRRIKG 267 Query: 173 PGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEAS 232 + +IG S M +LK+ + VA VLI GE+GTGKEL+A ++H S Sbjct: 268 EPEQWASARYTVDNLIGKSHPMLRLKETVRRVALGPSTVLIRGESGTGKELLAHSLHVGS 327 Query: 233 PRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISN-RSGKFEMADNGTLFLDEIGEL 291 R + P V +NCAA+PE++ ESELFG+V+GAFTGA + GKFE A+ GT+FLDEIG++ Sbjct: 328 NRCLGPFVKVNCAAVPENLLESELFGYVEGAFTGAKKGGQIGKFEQANGGTIFLDEIGDM 387 Query: 292 SLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVF 351 L +QAKLLRVLQ +I+R+GD+R V+VRV+AATNR L + + FR DL++RL+V Sbjct: 388 PLLMQAKLLRVLQEKEIERLGDNRARHVEVRVVAATNRPLEQMIADNTFREDLYYRLNVV 447 Query: 352 PLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAI 411 L +P LRER DD+ L YF + GL+ LSA A L ++Y++PGNVRELE+ + Sbjct: 448 TLQIPSLRERIDDLKDLVEYFLAKYNHAFGLNITGLSADALELFENYNWPGNVRELENVV 507 Query: 412 HRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQA 471 RA L D I++ H L + + ++L E ++E I A Sbjct: 508 ERAFNL------VDGHIIDVMHLP---PYLQKFGKSKRHSINKSLPSLLEQVEKEAIADA 558 Query: 472 LAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 L+ + N A++L A L++ + G+K Sbjct: 559 LSVTNGNKMQAAKILGISRAWLYKKIAQYGIK 590 >UniRef50_A4J593 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J593_DESRM Length = 582 Score = 482 bits (1242), Expect = e-134, Method: Composition-based stats. Identities = 128/387 (33%), Positives = 207/387 (53%), Gaps = 23/387 (5%) Query: 117 PLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDA 176 P+F +IG L ++ E ++L L + LL +++ Sbjct: 214 PVFDSGKVIGGLAVEK--------DITEIVQLNQELNKASTQVKLLEQEIRK-------- 257 Query: 177 TPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAV 236 + ++IG S + +L + ++ ++ VL+ GE+GTGKEL+A+AIH+ SPR + Sbjct: 258 ISGQDCAFNKLIGRSEAIQKLIVFGKKISVTEATVLLRGESGTGKELLARAIHQNSPRHM 317 Query: 237 NPLVYLNCAALPESVAESELFGHVKGAFTGAISN-RSGKFEMADNGTLFLDEIGELSLAL 295 NP + +NC A+P ++ ESELFG+ GAFTGA + G FE+A+ GTLFLDE+GE+ + + Sbjct: 318 NPFIVVNCGAIPNNLFESELFGYEGGAFTGADRKGKPGMFELANGGTLFLDEVGEMPIEM 377 Query: 296 QAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSV 355 QAKLLRVLQ G RVG + + V+VRVLAAT+R+L + + +FR DL++RL+V L + Sbjct: 378 QAKLLRVLQEGTFYRVGGSQSVHVNVRVLAATHRNLEDMINRRQFREDLYYRLNVVALEI 437 Query: 356 PPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAV 415 PPLR+R +D+ L F ++ + + + Y++PGNVREL++A+ R V Sbjct: 438 PPLRDRREDIPELVHLFMQEFCQKYDKNIKKIEPAVMTAFLDYTWPGNVRELKNAVERLV 497 Query: 416 VLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQN 475 VL + + E + PV + L +++ I + L Q Sbjct: 498 VLTDGDIIDEAALPENLRRNT------YISLVTSPVSQGKLMNVAVEAEKQLILKTLQQV 551 Query: 476 HHNWAACARMLETDVANLHRLAKRLGL 502 N + AR+L + L+ ++LG+ Sbjct: 552 RGNRSEAARVLGIPRSTLYYKLRQLGI 578 >UniRef50_C0GRG2 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GRG2_9DELT Length = 464 Score = 482 bits (1242), Expect = e-134, Method: Composition-based stats. Identities = 142/363 (39%), Positives = 213/363 (58%), Gaps = 11/363 (3%) Query: 140 VFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKK 199 V SD++ + + A+ +++ +++L+ Q T E ++G S M L + Sbjct: 105 VLSDDQGQTMGAV--EIVTDISEMDRLDRQLRQL-TRTLDEESSFQGIVGHSRQMKNLFE 161 Query: 200 EIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGH 259 +E A SD V I GE+GTGKELVA+AIH SPRA P + +NCAAL ES+ ESELFGH Sbjct: 162 LVEKAAQSDFPVFICGESGTGKELVAQAIHNLSPRAEQPYIQVNCAALNESLLESELFGH 221 Query: 260 VKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRV 319 VKGAFTGA+ +R G+FE A G +FLDEIG+L +A+Q KLLRVL+ +RVGD+R + V Sbjct: 222 VKGAFTGALQHRKGRFEAAHKGDIFLDEIGDLPMAMQVKLLRVLETKTFERVGDNRTISV 281 Query: 320 DVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLR 379 D+R + ATN++L + + G FR DLF+R++V P+ +PPLRER +DV L +F ++ + Sbjct: 282 DLRFITATNKNLPDLIARGGFREDLFYRINVIPIHLPPLRERKEDVPHLVDFFIKRLSRK 341 Query: 380 QGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEV 439 + LS A + YS+PGNVREL+ A+ + VLA R E + E + Sbjct: 342 NKKNIQGLSPEAMRIFMQYSWPGNVRELKSALEYSYVLAEGDRIRSENLPE----YLKDG 397 Query: 440 TLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKR 499 V P +NL++ Q++ + +AL Q+ N + AR+L + + ++ Sbjct: 398 GNDFQAVDLPPAPAENLQQR----QKQELIEALKQSSGNKSQAARLLGINRVTVLNRMRK 453 Query: 500 LGL 502 G+ Sbjct: 454 YGI 456 >UniRef50_B2S230 Formate hydrogenlyase transcriptional activator FhlA n=3 Tax=Treponema RepID=B2S230_TREPS Length = 600 Score = 482 bits (1242), Expect = e-134, Method: Composition-based stats. Identities = 175/518 (33%), Positives = 251/518 (48%), Gaps = 37/518 (7%) Query: 19 IGHQDRFQRLITTLRQVLECDASALLRYDSRQ-FIPLAIDG--LAKDVLGRRFALEGHPR 75 + + ++ L ++ + + +L ++S Q G + L Sbjct: 86 PAAEKSLEMILDALYEIARYELAVVLSFESSQILRVRKARGPLYTPRLQHHTIDLTKRQD 145 Query: 76 LEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQP 135 L I F D Y LIP ++ H+C+ PL+ IG LTLD Sbjct: 146 LARILSQKSPYLFDPTLAHTDTYTELIPMPQN---HSCLIAPLYIDDTPIGMLTLDHRLC 202 Query: 136 DQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPF----EAVKQTQMIGLS 191 +QF + ++ L + A++ E L ++ ++ MIG S Sbjct: 203 EQFTPDVVRFITTLSKLISLAVAQTDASETLSQKSHALLTERNALLAPQSPAFKNMIGTS 262 Query: 192 PGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESV 251 P T+ I++VAASDL VL+ GETGTGKELVA+ +H+ S R+ P V +NC+AL S+ Sbjct: 263 PAWTRTLDAIKLVAASDLPVLVCGETGTGKELVARTVHQLSTRSDKPFVPVNCSALVHSL 322 Query: 252 AESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRV 311 AESELFGH KGAF+GA+ G+FE+A GTLFLDE+G+L L LQ KLLRVLQ G +RV Sbjct: 323 AESELFGHEKGAFSGAVGTHRGRFELAHGGTLFLDEVGDLPLELQPKLLRVLQDGVFERV 382 Query: 312 GDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGY 371 G +R + V VR++AATN +L E V G+FR DL +RL VFPLS+PPLRER +DV LLA + Sbjct: 383 GGERSVSVSVRIIAATNINLSEAVTQGKFREDLLYRLDVFPLSLPPLRERAEDVALLAEH 442 Query: 372 FCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVIL-- 429 F ++ + R G R LS A + +FPGNVREL + + RA +LAR G E ++ Sbjct: 443 FIQKIKTRPGFERTQLSPSAFKKIFSLTFPGNVRELRNLLERAALLARGDTIGAEHLVCR 502 Query: 430 -----------EAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQ-------- 470 +H E P + + + + Sbjct: 503 TPESGTQTTVYPREHTEVSESVQPAIPLCIRDSSCMVRCTQGKKEETTLVVNFHQAQRAA 562 Query: 471 ---ALAQNHHNW---AACARMLETDVANLHRLAKRLGL 502 AL ++ A +L + L K+LGL Sbjct: 563 IQAALDASNGKIYGANGAAEILGLKPSTLQSKMKKLGL 600 >UniRef50_Q1PYB5 Similar to sigma 54 response regulatory protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYB5_9BACT Length = 645 Score = 482 bits (1242), Expect = e-134, Method: Composition-based stats. Identities = 146/399 (36%), Positives = 213/399 (53%), Gaps = 31/399 (7%) Query: 117 PLFAGQNLIGALTL-----DGMQPDQFDVFSDEELRLIAALAAGALSNAL-----LIEQL 166 PL + IG + + + + + ++L L AL L ++L Sbjct: 256 PLITHKGAIGIVVVMVDITERRKMEDSRQKDHDKLEQQVEERTLELRTALSEIKTLKDRL 315 Query: 167 ESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAK 226 E++N+ Q++G S + + E VA ++ VLI GETGTGKEL+A Sbjct: 316 EAENIYLRHENK-RRHHFAQILGQSDSLKYVLYRAEQVAPTNATVLILGETGTGKELIAF 374 Query: 227 AIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLD 286 AIH+ SPR P++ +NCAALP ++ ESELFG KGAFTGA + R G+FE+A+ TL LD Sbjct: 375 AIHDMSPRKERPMITVNCAALPGNLIESELFGREKGAFTGADTRRIGRFEVANGSTLCLD 434 Query: 287 EIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFH 346 EIGEL L LQAKLLRV+Q+ + +R+G ++VDVR++A TNR+L EE+ GRFR DL++ Sbjct: 435 EIGELPLELQAKLLRVIQHNEFERLGSPHTIKVDVRIVATTNRNLEEEIRNGRFRQDLYY 494 Query: 347 RLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRE 406 RL+VFP++VPPLR+R +D+ L+ F E+ + G + A LQ Y +PGNVRE Sbjct: 495 RLNVFPITVPPLRQRKEDIPLMVHAFVERYSRKLGKQITSIQKEAMKALQDYPWPGNVRE 554 Query: 407 LEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRE 466 LE I RAV+L P + L + P +R E +R+ Sbjct: 555 LESIIERAVILCPG----------------PVLQLADKLEISSPAFSSTVR-TLEETERD 597 Query: 467 TIRQALAQNHH---NWAACARMLETDVANLHRLAKRLGL 502 I + L++ A +L + L +LG+ Sbjct: 598 QILKILSETRWRIEGKNGAAAILGIHPSTLRARMHKLGI 636 >UniRef50_D0TB92 Two-component system response regulator n=1 Tax=Bacteroides sp. 2_1_33B RepID=D0TB92_9BACE Length = 455 Score = 482 bits (1242), Expect = e-134, Method: Composition-based stats. Identities = 144/381 (37%), Positives = 214/381 (56%), Gaps = 18/381 (4%) Query: 128 LTLDGMQPDQFDV----FSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVK 183 L +D ++ +D F +++L L + A+ + + +++ GD Sbjct: 88 LAVDAVKKGAYDFIEKPFDNDKLLLT---VSRAVEHCRMKGEIKHLKNKLGDM------- 137 Query: 184 QTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLN 243 T +IG G+ Q+ ++E VA +D VLI GE+GTGKEL+A AIH+ S R P V +N Sbjct: 138 NTGIIGEKSGLRQVMLQVERVAETDATVLIHGESGTGKELIAWAIHDRSKRVSQPFVAIN 197 Query: 244 CAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVL 303 C A+P ++ ESELFGH KGAFT A ++G FE A+ GTLFLDEIGEL L Q KLLRVL Sbjct: 198 CGAIPLTLMESELFGHEKGAFTDAKETQAGTFERANGGTLFLDEIGELPLDAQVKLLRVL 257 Query: 304 QYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGD 363 + I R+G + + V+VR++AATNR+L EEV G+FR DL +RL+VF + +PPLRER + Sbjct: 258 EERKITRIGGKKAIPVNVRIVAATNRNLEEEVRLGKFRLDLLYRLNVFTIQLPPLRERKE 317 Query: 364 DVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRS 423 D+ LLA +F + LS ++ A + L Y +PGNVR+LE+A+ A++L + Sbjct: 318 DIPLLAAFFLRKHNSLLNLSIESITPEAMDQLCAYDWPGNVRDLENAVQSAMILCVDRQI 377 Query: 424 GDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACA 483 L A+ ++ L P+ A +LR+ ++ I AL ++++N A Sbjct: 378 HPGH-LPARIKSYQMERLTAPQEAEEDT---SLRDTNSLAEKARILSALQKHNYNRTLTA 433 Query: 484 RMLETDVANLHRLAKRLGLKD 504 L L KR L + Sbjct: 434 EALNISRKTLFNKMKRYNLGN 454 >UniRef50_A7HGB6 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Cystobacterineae RepID=A7HGB6_ANADF Length = 490 Score = 482 bits (1242), Expect = e-134, Method: Composition-based stats. Identities = 154/417 (36%), Positives = 221/417 (52%), Gaps = 12/417 (2%) Query: 91 DSELPDPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSD--EELRL 148 D ++P GL V + + G + L ++ +D + E++ L Sbjct: 60 DIKMPQ-LSGLELLSAVKHRRPEVEVIMMTGHATVET-ALAAVRSGAYDYLTKPFEDVEL 117 Query: 149 IAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASD 208 +A A A +L ++ + E ++G S + ++ + IE VA S Sbjct: 118 VARAVAKAAERKMLFDRNRRLETQLREK---EGGAPEGLVGNSAPIREVVRMIEAVAYSA 174 Query: 209 LNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAI 268 VL++GE+GTGKELVA+A+H SPR P V LNC AL E++ ESELFGHVKGAFTGA Sbjct: 175 TTVLVTGESGTGKELVARALHARSPRRAQPFVALNCGALTETLLESELFGHVKGAFTGAQ 234 Query: 269 SNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATN 328 ++ G F+ AD GT+FLDEIG++ A Q +LLRVLQ G+++RVG +RVDVRV+AAT+ Sbjct: 235 RDQKGLFDAADGGTIFLDEIGDIPPATQVRLLRVLQEGELKRVGSAESVRVDVRVIAATH 294 Query: 329 RDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLS 388 RDL V AG+FR DLF+RL+V + +P LR+R DDV LLA +F + R G L+ Sbjct: 295 RDLPRLVKAGKFREDLFYRLNVINIPLPSLRDRVDDVPLLAHHFLRRYAERLGKRVRALA 354 Query: 389 AGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAA 448 A LL Y +PGNVRELE+AI RAVVL R + A + P Sbjct: 355 PDAIELLCGYRWPGNVRELENAIERAVVLCRGEAVTGGDLPPAVTGRTAPLVREAPAGGD 414 Query: 449 VPV-----VKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRL 500 V ++ F++ + + +N +A AR D +N R+ ++ Sbjct: 415 EAVWLTMSYATAKEQSLRRFEKGYVETLMRHCDNNISAAARKAGMDRSNFKRVLRKY 471 >UniRef50_A7HBA5 Two component, sigma54 specific, transcriptional regulator, Fis family n=6 Tax=Bacteria RepID=A7HBA5_ANADF Length = 466 Score = 482 bits (1241), Expect = e-134, Method: Composition-based stats. Identities = 154/473 (32%), Positives = 240/473 (50%), Gaps = 30/473 (6%) Query: 36 LECDASALLRYDSRQFIPLAIDG-LAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSEL 94 + + + +L D + + ++ G L KD +G +E + + D ++ Sbjct: 1 MPTETTRILVVDDEEIVRESLGGWLEKDGYVVAPLPDGRSAVEKLKSERWSIMI-VDLKM 59 Query: 95 PDPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDV----FSDEELRLIA 150 P DGL + + K+ + + + + + M+ +D F EEL ++ Sbjct: 60 P-GMDGLQVLEAAKKLQPELAVVIMTAYATVDT-AVTAMKLGAYDYLVKPFDPEELSIM- 116 Query: 151 ALAAGALSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLN 210 + + + L +N + A E + ++ SP M + + A S+ Sbjct: 117 ------MQKIVSQQSLVRENAVLRQALKQE-YRFRDLLSKSPAMQSVFELARTAARSNST 169 Query: 211 VLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISN 270 +L+ GE+G+GKE++A+A+H SPRA P V ++CAAL ES+ ESELFGH KG+FTGAIS Sbjct: 170 ILVLGESGSGKEVLARAVHAESPRAGGPFVAVSCAALTESLLESELFGHEKGSFTGAISR 229 Query: 271 RSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRD 330 R GKFE A GTLFLDE+G++ LQ LLRVL+ RVG + + VDVR++AATNRD Sbjct: 230 RKGKFEAAHGGTLFLDEVGDIGPKLQLDLLRVLEERRFHRVGGNEPIEVDVRIIAATNRD 289 Query: 331 LREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAG 390 LR G+FR DLF+RL+V P+ VPPLRER +D+ LL F E+ + +S Sbjct: 290 LRRAAHEGKFREDLFYRLNVIPILVPPLRERREDIPLLVENFVERLSVEMKRRIEGVSPD 349 Query: 391 ARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVP 450 A L + +PGNVREL + + R V+A T +++ P E A+ P Sbjct: 350 AMGALMAHDWPGNVRELRNVLERGAVVATGT------VIQLSDLGLPTRL----EAASKP 399 Query: 451 VVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 +L E ++ + LA + N + AR+L D L+ ++ GL+ Sbjct: 400 GTLASL----EEVEKRHVAAVLAHANGNVSQSARILGIDRVTLYNKMRKYGLR 448 >UniRef50_B5YK20 Response regulator HsfA n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YK20_THEYD Length = 448 Score = 482 bits (1241), Expect = e-134, Method: Composition-based stats. Identities = 141/380 (37%), Positives = 210/380 (55%), Gaps = 23/380 (6%) Query: 129 TLDGMQPDQF----DVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQ 184 + M+ F F + +R I A+ + ++QL Q + ++ Sbjct: 88 AVTAMKQGAFYYIAKPFKLDIIRKIILEASEKVKLKKEVKQLRQQ---------LDFHEK 138 Query: 185 TQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNC 244 +I + M +L + +A +D NVLI+GE+GTGKEL A+ IH S R P + +NC Sbjct: 139 VNIITQNSKMLKLLEIARQIAPTDCNVLITGESGTGKELFARYIHLNSLRKKGPFLAVNC 198 Query: 245 AALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQ 304 A E + +ELFGH KGAFTGA + + G EMA +G+LFLDEI E+SL +QAKLLRV+Q Sbjct: 199 GAFSEELLSNELFGHEKGAFTGANALKKGLIEMASSGSLFLDEITEMSLTMQAKLLRVIQ 258 Query: 305 YGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDD 364 + R+G ++VDVR +AATNRD++EEV G+FR DL++RL+V + +PPLRER DD Sbjct: 259 EREFFRLGATEPIKVDVRFIAATNRDIKEEVKNGKFREDLYYRLNVVNIEIPPLRERKDD 318 Query: 365 VILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSG 424 + LL YF ++ L +S A NLL +Y +PGNVRELE+ I RAVVL +++ Sbjct: 319 IPLLVAYFSKKYSLLMKKEITGVSEEAINLLVNYEYPGNVRELENIIERAVVLCNSSQ-- 376 Query: 425 DEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACAR 484 ++ +H L +L E ++E I+ L + +N A+ Sbjct: 377 ----IDVEHLPQDLKELKIEVFTKKEGKFMSL----EELEKEYIKWILREVGNNKTVAAQ 428 Query: 485 MLETDVANLHRLAKRLGLKD 504 +L D +L R K G+++ Sbjct: 429 ILGIDRVSLWRKLKNYGIEN 448 >UniRef50_Q3ACE2 Sigma-54 dependent transcriptional regulator n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3ACE2_CARHZ Length = 573 Score = 481 bits (1240), Expect = e-134, Method: Composition-based stats. Identities = 161/504 (31%), Positives = 258/504 (51%), Gaps = 46/504 (9%) Query: 5 VDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLAKDVL 64 ++ L NIA EL+ + L TL +LE + D + + A +A D+ Sbjct: 108 INELKNIADELENVLA-------LKQTLETILEAGQEGYMVLDLDKTVTHANKAIA-DLF 159 Query: 65 GRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGL--PLFAGQ 122 G + + + + ++ P ELP+ D + + V P+ Sbjct: 160 GLKLSDIVNKPINSLTAN------PFFCELPESADDIKTEVVEINGRQVVAFKYPIVKDY 213 Query: 123 NLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQ-NMLPGDATPFEA 181 L G + +++I + L+ A + QL S+ + + T + + Sbjct: 214 KLYGGV-----------------IKVIFQEVSDLLALAEKVNQLNSELSYYKNELTKYTS 256 Query: 182 VKQTQ--MIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPL 239 + T+ +IG P + +LK+ I+ +A + VLI GE+GTGKELVA A+H S R Sbjct: 257 KQFTENKIIGNHPSIVRLKEIIKKIAPYNTTVLIRGESGTGKELVAHALHVESGR-PGSF 315 Query: 240 VYLNCAALPESVAESELFGHVKGAFTGAISN-RSGKFEMADNGTLFLDEIGELSLALQAK 298 + +NCAA+PE++ E+ELFG+V+GAFTGA + GKFE+A+NGT+FLDEIG++ L +QAK Sbjct: 316 IKVNCAAIPENLFEAELFGYVEGAFTGAKKGGQIGKFELANNGTIFLDEIGDMPLTMQAK 375 Query: 299 LLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPL 358 LLRVLQ +++R+GD + +++VRV+AATN++L E + +FR DL++RL+V L VP L Sbjct: 376 LLRVLQEKEVERLGDRKTRKINVRVIAATNQNLEELIKKKKFREDLYYRLNVISLYVPAL 435 Query: 359 RERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLA 418 RER +D+ LL YF E+ G + +S ++ +YS+PGN+RELE+ + R L Sbjct: 436 RERIEDLPLLIKYFIEKFNKEYGTNVTGISPEVMDIFMNYSWPGNIRELENVLERCFNLV 495 Query: 419 RATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHN 478 + P L + Q+L EA+++E I+ AL + N Sbjct: 496 EGKVI--------EKKYLPPYILGEELKNKEFPLGQSLTNLLEAYEKELIKAALLKAKGN 547 Query: 479 WAACARMLETDVANLHRLAKRLGL 502 + A +L LH+ K L Sbjct: 548 KSKAANLLGISRQWLHKRLKYFNL 571 >UniRef50_D2R8T8 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Planctomycetaceae RepID=D2R8T8_9PLAN Length = 457 Score = 481 bits (1240), Expect = e-134, Method: Composition-based stats. Identities = 150/426 (35%), Positives = 222/426 (52%), Gaps = 24/426 (5%) Query: 81 RAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDV 140 RA D+V + D +D L +++ + + L G + ++ ++ FD+ Sbjct: 46 RAFDIVLSDIRLDDGDGFDVLAFSRKNRPEQSVI---LLTGYGTVDT-AIEALRAGAFDL 101 Query: 141 FS----DEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQ 196 + DEEL L ++ AL ++ +N+ ++G M + Sbjct: 102 LTKPLIDEELLL-------SIERALSQRKVVEENVQLKAQLDL-RFGLENIVGHEHRMQK 153 Query: 197 LKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESEL 256 + +E +A + VLI+GE+GTGK L+A+AIH R V + C A+PES+ ESEL Sbjct: 154 VFDMVERIADTRATVLITGESGTGKSLLARAIHRRGSRRDQAFVEVACGAMPESLLESEL 213 Query: 257 FGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRC 316 FGH G+FTGA ++ GKF AD GT+FLDEIG S +LQ KLLRVLQ + + VG + Sbjct: 214 FGHAAGSFTGATGDKIGKFTQADKGTIFLDEIGTASASLQVKLLRVLQELEFEPVGSTKT 273 Query: 317 LRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQC 376 RVD RV+ ATN L + V AGRFR DL++R++V + VPPLRER D+ LLA +F ++ Sbjct: 274 QRVDTRVILATNEKLEQAVAAGRFRQDLYYRVNVINIEVPPLRERIADIPLLANHFLQRT 333 Query: 377 RLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAF 436 G S +Q Y++PGNVREL++ + RAV+L R + E + A Sbjct: 334 CEESGKRSQGFSDDVITAMQRYNWPGNVRELQNVVERAVLLGRGPKVQVEDLTPA----- 388 Query: 437 PEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRL 496 V+ PV + L+EA E+ +R I L + N A A L + L++ Sbjct: 389 ---IASGQIVSIDPVGNKALKEALESPERAIILDVLEMHQWNRNATADALGINRTTLYKK 445 Query: 497 AKRLGL 502 KRLGL Sbjct: 446 MKRLGL 451 >UniRef50_B4D0Z8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D0Z8_9BACT Length = 466 Score = 481 bits (1240), Expect = e-134, Method: Composition-based stats. Identities = 141/374 (37%), Positives = 205/374 (54%), Gaps = 15/374 (4%) Query: 129 TLDGMQPDQFDV----FSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQ 184 L+ M+ +D F +EL+L + AL + L +N E + Sbjct: 88 ALEAMKLGAYDYITKPFKVDELQL-------TIQRALDNQSLVRENRNLRQIVK-EKYRF 139 Query: 185 TQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNC 244 +IG S M ++ I VA +D +LI GE+GTGKELVA+A+H S R P V +NC Sbjct: 140 ENIIGTSTKMQEIYNLIAKVADTDSTILIQGESGTGKELVARALHFNSTRQHQPFVAINC 199 Query: 245 AALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQ 304 +ALPE++ ESELFGH KG+FTGA+ ++ G FE A+ GT+FLDE+ ++ LQ KLLRVLQ Sbjct: 200 SALPENLLESELFGHKKGSFTGAVQDKIGLFEEAEGGTIFLDEVNSMAQPLQTKLLRVLQ 259 Query: 305 YGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDD 364 I+RVGD + + ++VRVLAATN L +++ G FR DL++RL+V P+ +P LRER DD Sbjct: 260 ERQIRRVGDTKSVPINVRVLAATNEALGDKIKGGNFREDLYYRLAVIPVEMPALRERPDD 319 Query: 365 VILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSG 424 + LL +F ++ + G + A +L Y +PGNVRELE+A+ RA L Sbjct: 320 IPLLVSHFLQKNAAQTGTEAKKIDPKAIEMLAKYRWPGNVRELENAVERACALCDDALIR 379 Query: 425 DEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACAR 484 + T P E + V Q L E +R I + + N ++ A+ Sbjct: 380 ---TTDLPPQVIRHATAPPVEHSGTLPVGQTLDEYIREQERRYIEETIKFNGNSREKAAK 436 Query: 485 MLETDVANLHRLAK 498 ML +A L+R + Sbjct: 437 MLGISMATLYRKLE 450 >UniRef50_A3ZU96 Probable two-component response regulator n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZU96_9PLAN Length = 651 Score = 481 bits (1240), Expect = e-134, Method: Composition-based stats. Identities = 165/499 (33%), Positives = 250/499 (50%), Gaps = 19/499 (3%) Query: 5 VDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLAKDVL 64 ++ L I Q+ + ++ + +++ +D + + L + Sbjct: 160 LEQLLTIIESWQKTRDMHTLLTEMAEAAAELFGSERASIFLWDRPKKTLVGRPALGIEG- 218 Query: 65 GRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLF-AGQN 123 G + + + + G+ R + D + I + + +PL Sbjct: 219 GELRVPDDRGVVGHVVQTGEPRRVDELDK--DEINRDIDQSLAFHTRNLLCVPLVGRRGR 276 Query: 124 LIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVK 183 + GA L Q F L +AA A+ AL N E++ + + A Sbjct: 277 IFGAFELINKQLGNFTAEDQLGLTELAAHASSALENTQETERI----LASRNRLADAAAA 332 Query: 184 QTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLN 243 ++IG P + L+ I VA S+L VL+ GE GTGKE+V+++IH S R PLV +N Sbjct: 333 AAELIGDCPAIATLRGTIRRVAESNLPVLVLGENGTGKEVVSQSIHFRSDRRAQPLVAVN 392 Query: 244 CAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVL 303 CAA+P+++ ESELFG KGAFTGA R GKFEMAD GTLFLDEIG+LSL+ Q+KLLRVL Sbjct: 393 CAAVPDTLLESELFGREKGAFTGADETRPGKFEMADGGTLFLDEIGDLSLSGQSKLLRVL 452 Query: 304 QYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGD 363 + I RVG ++VDVR++AATNRDL E V +FR DLF RL V + +PPLRERG Sbjct: 453 EDQLIMRVGGTSEIQVDVRIIAATNRDLGELVREKKFREDLFFRLHVVTIELPPLRERGT 512 Query: 364 DVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRS 423 D++ LA +F L+ G LS A+ L +++PGNVREL + + R + L Sbjct: 513 DILTLANHFLHHFSLKTGRQTPTLSEAAQRRLLAHAWPGNVRELRNTMERVIFLHS---- 568 Query: 424 GDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACA 483 + +++ + F + +P L +AT FQR I++ + N +A A Sbjct: 569 --DEVIQPESLQFHSLDSHDDAPMNLP-----LNDATAEFQRRYIQRHVDAAQGNISAAA 621 Query: 484 RMLETDVANLHRLAKRLGL 502 + +NL+R K+L + Sbjct: 622 EKIGMHRSNLYRKMKQLEM 640 >UniRef50_C9YE96 Transcriptional regulatory protein xylR n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YE96_9BURK Length = 604 Score = 481 bits (1239), Expect = e-134, Method: Composition-based stats. Identities = 144/347 (41%), Positives = 191/347 (55%), Gaps = 15/347 (4%) Query: 171 MLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHE 230 G+ TP T ++G S + VA + VL +GE+G GKE+ A+++H Sbjct: 253 EALGEHTPTSGQDPT-LVGASSAFNAAFHMVRRVAPTPATVLFTGESGVGKEMFARSLHR 311 Query: 231 ASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGE 290 S RA P V +NCAA+PE++ ESELFG +GAFTGA ++R G+FE AD GTLFLDEIG Sbjct: 312 NSDRAARPFVAINCAAIPETLIESELFGVERGAFTGAGASRPGRFERADGGTLFLDEIGT 371 Query: 291 LSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSV 350 LSL Q KLLR LQ G+I+RVG + ++V+VRV+AATN LRE V G FR DLF+RL+V Sbjct: 372 LSLVAQGKLLRALQEGEIERVGGTKTVKVNVRVVAATNEHLREAVRKGSFREDLFYRLNV 431 Query: 351 FPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHA 410 FP+ +PPLRER DD+ LL +F R R S A L +Y FPGN+REL++ Sbjct: 432 FPIHLPPLRERRDDIPLLMQHFLNHYRERYQREVPGFSQRAVKALFNYGFPGNIRELQNL 491 Query: 411 IHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQ--------------NL 456 I RAV++ D L E L P AA + Sbjct: 492 IERAVIMVNDGELIDVHQLFRGGEELSEGVLSLPASAAGDAGGRLVGGTESSSSHVSLTP 551 Query: 457 REATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 + ++E I AL ++ N AA AR L A L AK+ G++ Sbjct: 552 GQTLGGAEQEWIAAALRRSAGNIAAAARQLGITRATLLYRAKQHGIE 598 >UniRef50_C0QUD7 Nitrogen assimilation regulatory protein n=1 Tax=Persephonella marina EX-H1 RepID=C0QUD7_PERMH Length = 456 Score = 481 bits (1238), Expect = e-134, Method: Composition-based stats. Identities = 136/383 (35%), Positives = 213/383 (55%), Gaps = 8/383 (2%) Query: 128 LTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQT-- 185 L M+ + F E L E+ E + + + + + V Sbjct: 74 LAAFIMRIMSKNYFDYIEFPFSEKQLNSILEKINQKEENEKKLIYFRNRSAQDGVLCQYL 133 Query: 186 -QMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNC 244 +IG SP + ++ K VA +DL VLI+GETGTGKEL+A+ I + S R+ P + +NC Sbjct: 134 CSIIGSSPQLREICKLAGEVAPTDLPVLITGETGTGKELLARGIWKLSKRSNKPFIAINC 193 Query: 245 AALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQ 304 AA+PE++ ESELFG+ KGAFTGA + GKFE+AD GT+FLDEIGEL L+ Q+KLLRVLQ Sbjct: 194 AAIPENLLESELFGYEKGAFTGAEKTKEGKFELADGGTIFLDEIGELPLSAQSKLLRVLQ 253 Query: 305 YGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDD 364 G RVG ++ ++VDVRV+AATNRDL + V G+FR DL++RL++ L +PPLRER +D Sbjct: 254 EGTFYRVGGNKEIKVDVRVMAATNRDLEDMVAKGKFREDLYYRLNLIHLHLPPLRERKED 313 Query: 365 VILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATR-S 423 + + + + S S +L+ + GN+RELE+ + R+++L R + Sbjct: 314 IPYIVECIVNKYNQKLSKSIAGASKEYMEVLKDQRWEGNIRELENTVVRSMILCRDNILT 373 Query: 424 GDEVILEAQHFAFPEVTLPTPEVAAVPVV----KQNLREATEAFQRETIRQALAQNHHNW 479 +++ + P++ E+ V+ + ++ E E + ++ AL HN Sbjct: 374 VNDLTFLREKRVKPQIEDNFEEILKNRVLASLEEGSIEEIKEKIDKIIVQTALEYTKHNQ 433 Query: 480 AACARMLETDVANLHRLAKRLGL 502 +++L + A L + ++ GL Sbjct: 434 VKASQLLGINRATLRKKIQKYGL 456 >UniRef50_B8FWA2 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8FWA2_DESHD Length = 597 Score = 481 bits (1238), Expect = e-134, Method: Composition-based stats. Identities = 139/387 (35%), Positives = 204/387 (52%), Gaps = 21/387 (5%) Query: 117 PLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDA 176 P+ G ++GA+ + E + +A ++ +N D Sbjct: 229 PIIKGGKVVGAV-------GKAVFPHLAEAQELAEKVRCLEHKVTFFQEELQKNRTAQDI 281 Query: 177 TPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAV 236 M+ SP M +LK EI IVA S VLI+GE+GTGKE VA AIH S R Sbjct: 282 MK-------DMVAESPQMKKLKDEISIVATSTSTVLITGESGTGKEGVAHAIHLGSDRGK 334 Query: 237 NPLVYLNCAALPESVAESELFGHVKGAFTGAISN-RSGKFEMADNGTLFLDEIGELSLAL 295 P + +NCA++PES+ ESE+FG+V GAFTGA N + G+ E AD GTLFLDEIGE+ LAL Sbjct: 335 GPFIKVNCASIPESLMESEMFGYVGGAFTGAAKNGKPGRIERADGGTLFLDEIGEMPLAL 394 Query: 296 QAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSV 355 QAKLLRVLQ +I+R+G ++V++R+LAATN+ L + G FR DL++RL+V L + Sbjct: 395 QAKLLRVLQDREIERLGSTETIKVNIRILAATNKKLSNAIAKGEFRQDLYYRLNVINLHL 454 Query: 356 PPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAV 415 PPLRER +D+ L +F + + ++ A L YS+PGN+RELE+ + RAV Sbjct: 455 PPLRERLEDIEPLTHFFISKFNDILKANVSGITPNAMATLLQYSWPGNIRELENVVERAV 514 Query: 416 VLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQN 475 R+ ++E H ++ T + ++ +R+ I AL + Sbjct: 515 NYTRSG------LIELIHLPHQIISGNTALGQVMNKKTIRHQDRLGQIERDMIAAALEKA 568 Query: 476 HHNWAACARMLETDVANLHRLAKRLGL 502 N A++L + L+ + L Sbjct: 569 GGNKTKAAKLLNLSRSRLYDKLNKYDL 595 >UniRef50_C7PBZ0 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Sphingobacteriales RepID=C7PBZ0_CHIPD Length = 481 Score = 480 bits (1237), Expect = e-134, Method: Composition-based stats. Identities = 133/323 (41%), Positives = 190/323 (58%), Gaps = 15/323 (4%) Query: 183 KQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYL 242 +IG S M ++ + I VA D +VL+ GETGTGKE VA IH SPR P V + Sbjct: 165 NFEGIIGSSIPMQRVFELIRQVAPLDTSVLVLGETGTGKEGVANCIHHLSPRKAKPFVKV 224 Query: 243 NCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRV 302 NCAALP + ESELFGH KGAFTGA+ R GKFE AD GT+FLDEIG++ LQ KLLRV Sbjct: 225 NCAALPTHLIESELFGHEKGAFTGALEKRIGKFERADGGTIFLDEIGDMPADLQVKLLRV 284 Query: 303 LQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERG 362 LQ +I+R+G + ++V+VR++AATNR+L +E+ GRFR DL++RL VFP+ + LRER Sbjct: 285 LQEKEIERIGGNGPIKVNVRIIAATNRNLEKEIAEGRFRLDLYYRLHVFPIMLSALRERR 344 Query: 363 DDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATR 422 DD+ LL +F G ++ A L Y++PGNVREL++ I R+V+L+R + Sbjct: 345 DDIPLLIAHFIRLYASATGKGVSDIAPAALRQLMDYAWPGNVRELQNLIERSVLLSRESI 404 Query: 423 SGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWA-- 480 + ++ + + V + +++ E +RE I L + +H + Sbjct: 405 IREVILP-----------VSVKKETTVVSTETDIKTIVE-LEREHILTVLKKCNHKISGP 452 Query: 481 -ACARMLETDVANLHRLAKRLGL 502 A +L + L K+LG+ Sbjct: 453 GGAAELLNLPPSTLASKMKKLGI 475 >UniRef50_Q1PZT5 Strongly similar to sigma 54 response regulatory protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZT5_9BACT Length = 448 Score = 480 bits (1237), Expect = e-134, Method: Composition-based stats. Identities = 147/378 (38%), Positives = 207/378 (54%), Gaps = 26/378 (6%) Query: 129 TLDGMQPDQFDVFSD----EELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQ 184 + ++ +D + +EL L+ L AL +L +N + K Sbjct: 91 AVQAIKLGAYDYLTKPCQLKELDLL-------LQRALEKRKLSRENFHLKTLV-HDVQKP 142 Query: 185 TQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNC 244 + MIG SP + + K I+ A SD+ VLI GE+GTGKEL AK IH+ S RA P V +NC Sbjct: 143 SSMIGNSPAIKAVFKMIDKTAPSDVTVLIQGESGTGKELAAKMIHQYSKRADKPFVIVNC 202 Query: 245 AALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQ 304 A L ES+ ESELFGHVKGAFTGA +R G FE+A+ GTLFLDEIGEL++ QAKLLRV+Q Sbjct: 203 ATLQESLLESELFGHVKGAFTGAAESRVGLFEIAEGGTLFLDEIGELTVNTQAKLLRVIQ 262 Query: 305 YGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDD 364 G+I+RVGD+R + VD R++AAT+++L EV GRFR DL+ RL+V L +P LRER DD Sbjct: 263 SGEIRRVGDNRVITVDARIIAATHKNLPLEVKEGRFREDLYFRLNVITLRLPSLRERKDD 322 Query: 365 VILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSG 424 + L +F ++ G + + A + + Y +PGN+RELE+ I R VVLA Sbjct: 323 LTALIQHFLQKFCK--GERTMDMHPEALHAMTLYDWPGNIRELENTIERTVVLADGNIIS 380 Query: 425 DEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACAR 484 E + + E E+ A ++ I Q L + + + A+ Sbjct: 381 IEELPDNIRGRTYEHYGKNGEI------------ALSEVEKNHIIQVLKEKNWHKPLAAK 428 Query: 485 MLETDVANLHRLAKRLGL 502 L + L+ K + Sbjct: 429 TLGISLKTLYNKMKMYNI 446 >UniRef50_Q897M6 Transcriptional regulatory protein n=1 Tax=Clostridium tetani RepID=Q897M6_CLOTE Length = 567 Score = 480 bits (1237), Expect = e-134, Method: Composition-based stats. Identities = 124/329 (37%), Positives = 186/329 (56%), Gaps = 12/329 (3%) Query: 175 DATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPR 234 D + + +IG S + + K + A ++ NVLI GE+GTGKEL A AIH S R Sbjct: 248 DESNSASYSFDNIIGKSDKINKTKDLAKKAAKTNSNVLIRGESGTGKELFAHAIHMESER 307 Query: 235 AVNPLVYLNCAALPESVAESELFGHVKGAFTGAISN-RSGKFEMADNGTLFLDEIGELSL 293 + LNCAA+P + ESELFG+ GAFTGA + GKFE+AD GT+FLDEIG++ L Sbjct: 308 VYGNFIKLNCAAIPRDLLESELFGYEGGAFTGAKKEGKIGKFELADGGTIFLDEIGDMPL 367 Query: 294 ALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPL 353 +QAKLLRVLQ +++R+G R ++DVRV++ATNRDL + + G FR DL++RL+V + Sbjct: 368 HMQAKLLRVLQEREVERIGATRSKKIDVRVISATNRDLEKMIKEGEFREDLYYRLNVVTV 427 Query: 354 SVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHR 413 ++PPLRER +D+ +L+ Y E+ + G S A + L +Y + G VR+LE+ I R Sbjct: 428 NIPPLRERREDIKILSEYLLEKISKKLGKKTKSFSKEAMSCLMNYKWEGGVRQLENIIER 487 Query: 414 AVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALA 473 AV L ++E +HF V+ V +L + +++ I + L Sbjct: 488 AVNLVEHNE-----MIEPKHFPGNIVS------NKYIVEDSDLNKLINQVEKDIILETLI 536 Query: 474 QNHHNWAACARMLETDVANLHRLAKRLGL 502 + N A+ L +L+ + + Sbjct: 537 YCNWNKTLAAKKLNISRTSLYEKIAKHNI 565 >UniRef50_B8GM58 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GM58_THISH Length = 509 Score = 480 bits (1237), Expect = e-134, Method: Composition-based stats. Identities = 183/512 (35%), Positives = 262/512 (51%), Gaps = 15/512 (2%) Query: 1 MSFSVD-VLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGL 59 MS VD + + F L+ L L ++ + + A+ Sbjct: 1 MSAPVDHTVLQAIANGVAAETGEAFFDALVQHLAGALNVQSAWVTEWHPEASRLRALSFW 60 Query: 60 AKD--VLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLP 117 ++ V + + G P EA+ +V P P D +PGQ+++ + +G+P Sbjct: 61 SRGRFVPDYEYPIHGTP-CEAVISGQRLVVVPERVVELYPDDPDLPGQDAV---SYMGMP 116 Query: 118 LF-AGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPG-- 174 L ++G L + +P + D + A AA L+ +L + N Sbjct: 117 LRDTDGTVLGNLAVLDSRPLEADATCQAVFGIFGARAAAELARLRRDRRLRALNDEAAAL 176 Query: 175 DATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPR 234 A +++G S + +L +I VA S+ VLI+GETGTGKEL+A+AIH S R Sbjct: 177 RAELGSLRGFEEILGESAALRRLLADIGRVAPSEATVLITGETGTGKELIARAIHRHSRR 236 Query: 235 AVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLA 294 + PL+ +NCAA+ ++ ESE FGH KGAFTGA R G+F++AD GTLFLDE+GE+ L Sbjct: 237 SQGPLIKVNCAAITATLQESEFFGHEKGAFTGAAQRRDGRFKLADGGTLFLDEVGEMPLD 296 Query: 295 LQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLS 354 LQAKLLRVLQ G+ + VG R +RVDVRV+AAT+RDL + V G FR DL +RL+VFPL Sbjct: 297 LQAKLLRVLQEGEFEPVGSGRTVRVDVRVIAATHRDLTQMVREGGFREDLLYRLNVFPLH 356 Query: 355 VPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRA 414 PPLRERG+DV+LLA + ++G + LS R L+ + +PGNVRELE+ I RA Sbjct: 357 APPLRERGEDVVLLAEAIATRLARQEGATLAPLSPADRARLKAHPWPGNVRELENVIERA 416 Query: 415 VVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQ 474 + T G + L + EVT TP +AA P E +R I +AL Sbjct: 417 WITGTDTPDGRVLNL-VRALPGSEVTPRTPGLAADPDAVFTAAEML-QMERSNIERALVS 474 Query: 475 NHHNWA---ACARMLETDVANLHRLAKRLGLK 503 + AR+L L K LG++ Sbjct: 475 CQWKLSGVGGAARLLGLHPNTLASRMKSLGIR 506 >UniRef50_B8DLN3 Two component, sigma54 specific, transcriptional regulator, Fis family n=12 Tax=Deltaproteobacteria RepID=B8DLN3_DESVM Length = 491 Score = 480 bits (1237), Expect = e-134, Method: Composition-based stats. Identities = 166/491 (33%), Positives = 238/491 (48%), Gaps = 37/491 (7%) Query: 43 LLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLI 102 +L D I ++ G+ +D A+ D +P DGL Sbjct: 5 ILIIDDEDGIRFSLRGILEDEGFEVLEAPSGEDGLALLARETPDLVFLDIWMP-GMDGLA 63 Query: 103 PGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALL 162 + + + + +G I ++ ++ D E L A AL Sbjct: 64 VLDQLHAQRPDLPVIMISGHGTIET-AVNAIRKGAHDFI---EKPLSLEKVLIAAQRALE 119 Query: 163 IEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKE 222 L +N D+ P +M G SP M L+ +I VA +D VLI+GE GTGKE Sbjct: 120 YGDLRRENEALRDSLPTAHA--DEMNGRSPVMETLRGQIARVAPTDAWVLITGENGTGKE 177 Query: 223 LVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGT 282 L A+AIH S RA PLV +NCAA+PE + ESELFGH KGAFTGA S ++GKFEMA GT Sbjct: 178 LAARAIHAGSRRADRPLVAVNCAAIPEELIESELFGHEKGAFTGADSAKAGKFEMAHKGT 237 Query: 283 LFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRA 342 LFLDEIG++SL QAK+LR+LQ +RVG R +RVDVRV+AATN++L +E+ AG FR Sbjct: 238 LFLDEIGDMSLKTQAKILRILQEQQFERVGGHRTMRVDVRVIAATNKNLEDEIAAGTFRE 297 Query: 343 DLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPG 402 DL++RL VFPL +PPLRER DV LL F ++ G+ + A+ L Y +PG Sbjct: 298 DLYYRLRVFPLVLPPLREREGDVPLLIDLFAQRLARDYGVRPATFAPDAQEALARYPWPG 357 Query: 403 NVRELEHAIHRAVVLARATRSGDEVILE------------------------------AQ 432 NVREL + + R ++L ++ A Sbjct: 358 NVRELRNFVERMLILHAGLEVTRSMLPPEFLPRSGAGMNGSPGAATAAGGRAASGTGGAT 417 Query: 433 HFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVAN 492 + P++AA+ +L+ A AF+ + + LA+ N A + + ++ Sbjct: 418 GQGGDPLPDHLPDMAALLAPGMDLKAARAAFEAQYLAARLAECGGNVTRLAEAVGIERSH 477 Query: 493 LHRLAKRLGLK 503 L+R K ++ Sbjct: 478 LYRKLKGYNIQ 488 >UniRef50_A6GJF4 Sigma-54 dependent, Vanadium nitrogenase transcriptional regulator, VnfA n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GJF4_9DELT Length = 507 Score = 480 bits (1237), Expect = e-134, Method: Composition-based stats. Identities = 169/500 (33%), Positives = 241/500 (48%), Gaps = 17/500 (3%) Query: 16 QRGIGHQDRFQRLITTLRQVLECDASA------LLRYDSRQFIPLAIDGLAKDVLGRRFA 69 + + + ++ ++ ++L + L+ +S + + + R Sbjct: 12 TQALNEGMELRSVVNSILRMLAERPAMVHPYLTLVEPESGESHLEEAPDMTPEQQRRIRP 71 Query: 70 LEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLF-AGQNLIGAL 128 G + + ++G S+ + L G+ + + + PL ++G L Sbjct: 72 RHGEGIVGRVVQSGRTRVVHGSSDS--FLNRL--GRSEPEGMSFICAPLRQRDGEIVGTL 127 Query: 129 TLDGMQPD----QFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQ 184 +D D Q DV E L + A ++ + A + Sbjct: 128 AVDHRGQDPAALQGDVLLIEALAEMLGRAIELRRRSMAEREAVELENQRLRAELRGRFRV 187 Query: 185 TQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNC 244 +IG M Q+ I V+++D VL+ GE+GTGKELVA+AIH ASPRA P V +NC Sbjct: 188 ANIIGNHKSMAQVYDRIARVSSADTTVLLRGESGTGKELVARAIHFASPRAEAPFVAVNC 247 Query: 245 AALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQ 304 AALPE ESELFGH +GAFTGAI R G+FE+AD GTLFLDEIGEL Q KLLRVLQ Sbjct: 248 AALPEGTLESELFGHERGAFTGAIGARKGRFELADGGTLFLDEIGELRPHTQVKLLRVLQ 307 Query: 305 YGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDD 364 +RVG R DVRVL AT+ DL + G FR DL++RL+VF + +PPLRERG+D Sbjct: 308 ERRFERVGGATTRRCDVRVLTATHADLEAAMARGEFREDLYYRLNVFEIMLPPLRERGED 367 Query: 365 VILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSG 424 ++ LA +F E+ RQ + A L + +PGNVRELE+ I RAV+L Sbjct: 368 ILALADFFVERYGPRQRPPVTRIGHDAARHLLAWDWPGNVRELENCIERAVLLTNDGVIE 427 Query: 425 DEVILEAQHFAFPEVTLPTPEVAAVPVV--KQNLREATEAFQRETIRQALAQNHHNWAAC 482 E + A A V + L EA EA +RE + +ALA + N A+ Sbjct: 428 AEHLPPTLRGAAGPSRARASNTPASRAVAEGRTLDEALEAVEREILERALADSGGNRASA 487 Query: 483 ARMLETDVANLHRLAKRLGL 502 AR L + K+ L Sbjct: 488 ARALGISERRMGLRVKKYRL 507 >UniRef50_B8FXH0 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8FXH0_DESHD Length = 703 Score = 479 bits (1235), Expect = e-134, Method: Composition-based stats. Identities = 137/394 (34%), Positives = 215/394 (54%), Gaps = 30/394 (7%) Query: 113 CVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNML 172 + +P+ ++GAL +F + E+ + A L E+ Sbjct: 336 IMRVPIEREGKVVGAL--------AKTLFKNMEIAKMFAKKVMRLE--------ENLAYY 379 Query: 173 PGDATPFEAVKQ--TQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHE 230 + F + + +IG SP M + K + + +LI GE+GTGKE+ + AIH+ Sbjct: 380 KEELGKFHSSQFVFDDIIGESPRMKKAKSLAHRASQTTSTILILGESGTGKEVFSHAIHK 439 Query: 231 ASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISN-RSGKFEMADNGTLFLDEIG 289 +S R+ P + +NCAALPE + ESELFG+ +GAFTGA + GKFE+AD GT+FLDEIG Sbjct: 440 SSIRSNGPYIKVNCAALPEDLLESELFGYDEGAFTGARKGGKPGKFELADKGTIFLDEIG 499 Query: 290 ELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLS 349 ++SL +QAKLLRVLQ +++R+G ++VDVR++AATNRDL + V+ +FR DL++RL+ Sbjct: 500 DMSLGMQAKLLRVLQERELERLGGTEPIKVDVRIIAATNRDLHKMVMEHKFRLDLYYRLN 559 Query: 350 VFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEH 409 V + +PPLRER +D+ +A E+ R G + + L Y +PGN+RELE+ Sbjct: 560 VLTIDLPPLRERKEDIGFIARGLIEKINKRLGTDIQGVRPESITHLCAYDWPGNIRELEN 619 Query: 410 AIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIR 469 + RA+V+ DE + +H A P V +Q L A +A +RE + Sbjct: 620 ILERAIVIC------DEAWILPKHLALPGVM-----ETITLGAEQTLEYALQAAEREILD 668 Query: 470 QALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 + L + N AR+L + L++ + ++ Sbjct: 669 KTLRRVQGNKVQAARILGIHRSVLYKKLAKYNIQ 702 >UniRef50_C0QC42 Putative transcriptional activator n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QC42_DESAH Length = 922 Score = 479 bits (1235), Expect = e-134, Method: Composition-based stats. Identities = 140/399 (35%), Positives = 216/399 (54%), Gaps = 19/399 (4%) Query: 109 KVHACVGLPLFAGQNLIGALTLDGMQPDQ-FDVFSDEELRLIAALAAGALSNALLIEQLE 167 + A + +P G L D D F F+ EL +A+ + + N LL Sbjct: 539 RTKAMLAVPFEVKGTAKGILYHDNAYIDDCFSYFNKNELAGMASYLSKYV-NHLLNLTRR 597 Query: 168 SQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKA 227 + + T + +I S M + K+++ +A +D VLI GETG GKEL+A+ Sbjct: 598 IEEKTSKNYTRLGEISGENIIYQSLIMKKKLKQVDKIAGTDSTVLILGETGVGKELIARR 657 Query: 228 IHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDE 287 IHE S R PLV ++ ++PE++ ESELFGH KGAFTGA R+G+ E+A GTLF+DE Sbjct: 658 IHERSLRKDYPLVVVDPTSIPETLIESELFGHEKGAFTGADKQRTGRVELAHKGTLFIDE 717 Query: 288 IGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHR 347 +GE+ L++Q KLLR LQ I R+G + D R++AATNRDL++EV G FR DLF+R Sbjct: 718 VGEIPLSIQVKLLRALQEKTIVRLGGSTTIHSDFRLIAATNRDLQKEVAKGNFREDLFYR 777 Query: 348 LSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVREL 407 L+V P+ +PPLR+RG+D++L+A YF ++ R++ + + + +L Y++PGN+REL Sbjct: 778 LNVIPIEIPPLRKRGEDILLIAEYFLKKFRMKYNFPTIEFTPENKVMLIEYNWPGNIREL 837 Query: 408 EHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRET 467 + I RAV+L+ + E+ L T ++ P R + + QR Sbjct: 838 NNIIERAVLLSEEDQL--------------EIELKTKNNSSHPDDFFRDRPSLDEMQRRY 883 Query: 468 IRQALAQNHHNW---AACARMLETDVANLHRLAKRLGLK 503 I L + + A L +L+ + LG++ Sbjct: 884 IGTVLEECNGQIGGPGGAAERLGMKRTSLYARMRTLGMR 922 >UniRef50_A1ATK4 Two component, sigma54 specific, transcriptional regulator, Fis family n=12 Tax=Deltaproteobacteria RepID=A1ATK4_PELPD Length = 480 Score = 479 bits (1235), Expect = e-134, Method: Composition-based stats. Identities = 137/392 (34%), Positives = 207/392 (52%), Gaps = 22/392 (5%) Query: 129 TLDGMQPDQFDVFSDE-ELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQTQM 187 ++ M+ +D + +L +I A+ + ++ Q L + + Sbjct: 90 AVEAMKRGAYDYITKPFDLDVIDAI----VEKVGRAREIAGQVSLLKQELKEHYQVEKNI 145 Query: 188 IGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAAL 247 IG S M + K I VA SD+ +LI GE+GTGKE+VA+AIH S R P V +NCAA+ Sbjct: 146 IGNSAAMQSIYKTIGKVADSDITILIQGESGTGKEMVARAIHFNSGRLGKPFVAINCAAI 205 Query: 248 PESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGD 307 P + ESELFG +GAFTGA + GKFE A+ GT+FLDEIG++ L LQAK+LRVLQ + Sbjct: 206 PRDLLESELFGSERGAFTGASERKQGKFEQANQGTIFLDEIGDMPLDLQAKILRVLQEHE 265 Query: 308 IQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVIL 367 + RVG + + V+VR++AATN++L+E V FR DL++RL+V P+++ PLRER DD+ Sbjct: 266 VTRVGGTQSIAVNVRIVAATNQELQERVRQREFREDLYYRLNVVPITLAPLRERRDDIPE 325 Query: 368 LAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEV 427 L YF ++ + L+ A LL +S+PGNVRELE+ I RAV+L+ + Sbjct: 326 LVRYFLDRTCTELSIPPKQLTPEAMALLSRHSWPGNVRELENTIKRAVILSNDPMLTEAD 385 Query: 428 ILEAQHFAFPEVTLPTPEVAAVPVVKQNLREA----------------TEAFQRETIRQA 471 + E + + + +V+ LR + +R IR Sbjct: 386 F-DGLQPEGEETAMTPQDASLEAIVEAKLRSCLTGIEKLDKSDIHAKVLQQVERPLIRFI 444 Query: 472 LAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 L + N A +L + L + L ++ Sbjct: 445 LEKTRWNQVKAADILGINRNTLRKKIHDLEIE 476 >UniRef50_Q0SQI9 Phosphocarrier HPr/sensory box protein/sigma-54 dependent transcriptional regulator n=21 Tax=Clostridium RepID=Q0SQI9_CLOPS Length = 668 Score = 479 bits (1234), Expect = e-133, Method: Composition-based stats. Identities = 126/388 (32%), Positives = 194/388 (50%), Gaps = 27/388 (6%) Query: 117 PLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDA 176 PLF G ++ +L +S EQ Sbjct: 304 PLFIDGQFKGVISTSRP----------------VSLIKELMSKLNKSEQELDYYKNEFLR 347 Query: 177 TPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAV 236 + +IG + + + + + + VLI GE+GTGKEL+AKAIH S R Sbjct: 348 QLSKNSSFNNIIGSTRTLKDIMYMCQKASETTSTVLIRGESGTGKELIAKAIHNNSNRKN 407 Query: 237 NPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQ 296 P V +NCA++PE++ ESELFG+ KGAFTGA+ ++ GKF +AD GT+FLDEIG++ L++Q Sbjct: 408 KPFVRVNCASIPENLLESELFGYEKGAFTGAVQSKPGKFAIADTGTIFLDEIGDMPLSMQ 467 Query: 297 AKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVP 356 KLLRVLQ +I+ VG +DVRV+AATNR+L E + G FR DL++RL+V +++P Sbjct: 468 VKLLRVLQEREIESVGGITPKNIDVRVIAATNRNLEEMIEDGSFREDLYYRLNVLGINLP 527 Query: 357 PLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVV 416 PLRER +D+ LA +F + + + + + A NLL YS+PGN+RELE+ + RA+ Sbjct: 528 PLRERKEDIPELAEHFITKLNKKLHKTILGIKQDALNLLIEYSWPGNIRELENIMERAIN 587 Query: 417 LARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNH 476 L P P + + + E ++++ I A+ + Sbjct: 588 LCDGDYIDSSY--------LPSYLKPVESKSFNLNIDIDHILPFEEYEKQIIEAAMKKYK 639 Query: 477 -HNWAACARMLETDVANLHRLAKRLGLK 503 N + L + K+ ++ Sbjct: 640 SFNK--AGKALGLTHRTVSLKCKKYNIE 665 >UniRef50_A1ALJ3 Sigma-54 factor, interaction domain-containing protein n=5 Tax=Desulfuromonadales RepID=A1ALJ3_PELPD Length = 517 Score = 479 bits (1233), Expect = e-133, Method: Composition-based stats. Identities = 161/510 (31%), Positives = 245/510 (48%), Gaps = 24/510 (4%) Query: 6 DVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDS---RQFIPLAIDGLAKD 62 + + + + + + + T LR+ D +L D+ + + + Sbjct: 6 EFFREVTVRICSSLEIKTALRSAFTYLREFFPLDMLSLGICDASLSAIRRVAHVTADSTE 65 Query: 63 VLGRRFALEGHPRLE-AIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFAG 121 + G V +D + L ++ + LPL++G Sbjct: 66 THDEIIPVPGQLWASLQRWEMRSPVMVDSDQS---GLVRALAPHLKLDENSGILLPLWSG 122 Query: 122 QNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEA 181 + ++G LTL +FD L +A AL+NAL E+L D F + Sbjct: 123 EGMLGWLTLYAWGAGRFDAGHVALLATVADPFVIALANALAHEKLLRYRDNLIDDNRFLS 182 Query: 182 VK-----QTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAV 236 + +++G + G+ + + + VA + VL+ GETGTGKEL+A AIH ASPR Sbjct: 183 KELFTQGGDEIVGANLGLRHVMEMVRQVAPLNNTVLLLGETGTGKELIANAIHSASPRKD 242 Query: 237 NPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQ 296 PL+ +NC A+PE + +SELFGH KGAFTGA++ R G+FE AD GT+FLDEIGEL L Q Sbjct: 243 GPLIKVNCGAIPEQLIDSELFGHEKGAFTGAVTERRGRFERADGGTIFLDEIGELPLQAQ 302 Query: 297 AKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVP 356 +LLRVLQ +I RVG R + VD+RV+AAT+R+L + RFR DL+ RL+VFPL +P Sbjct: 303 VRLLRVLQNHEIDRVGGSRPIPVDIRVIAATHRNLESMIAENRFREDLWFRLNVFPLFIP 362 Query: 357 PLRERGDDVILLAGYFCEQCRLRQGLSR-VVLSAGARNLLQHYSFPGNVRELEHAIHRAV 415 PLR+R +D+ L +F Q G++ ++ GA L Y++PGNVRELE+ + R + Sbjct: 363 PLRQRREDIPGLTRHFISQKCRELGMAAMPDIAPGALVRLMEYAWPGNVRELENLVEREL 422 Query: 416 VLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQN 475 +L R L+ P P V++ L + +R+ L Sbjct: 423 ILHRGG------TLQFDALMPAARRGNAPVQREAPGVEEGLE--LDQAISRHLRRVLDLT 474 Query: 476 HH---NWAACARMLETDVANLHRLAKRLGL 502 A +L + L RLG+ Sbjct: 475 GGRIHGRGGAAELLGVKPSTLRWRLDRLGI 504 >UniRef50_C1A7J8 Putative NtrC family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A7J8_GEMAT Length = 457 Score = 479 bits (1233), Expect = e-133, Method: Composition-based stats. Identities = 156/405 (38%), Positives = 220/405 (54%), Gaps = 13/405 (3%) Query: 98 YDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGAL 157 DGL + + + + +G I ++ Q +D+ E L L Sbjct: 59 LDGLEVLKRLRQADPNATVVMISGHATIQT-AVEATQLGAYDIL---EKPLDTDRVLVLL 114 Query: 158 SNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGET 217 NA QL +N + + +++G S G+ L + IE V + VLI+GE Sbjct: 115 RNAFTNRQLTEENDRLRETIE----SRYEIVGRSFGIRSLLERIERVTGTPARVLITGEN 170 Query: 218 GTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEM 277 GTGKELVA+AIH S RA P + +NCAA+P + ESELFGH+KG+FTGAI++R+GKFE Sbjct: 171 GTGKELVARAIHRGSQRARKPFIEVNCAAIPSELIESELFGHMKGSFTGAIADRAGKFEQ 230 Query: 278 ADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLA 337 A GTLFLDEIG++S + QAK+LRVLQ G + R+G + ++VDVRVLAATN+DL EE+ A Sbjct: 231 AHGGTLFLDEIGDMSQSAQAKVLRVLQDGFVTRIGGSKPVQVDVRVLAATNKDLEEEIAA 290 Query: 338 GRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQH 397 GRFR DL++RL+V P++VP LRER +D+ LL +F +Q R GL +S A L Sbjct: 291 GRFREDLYYRLNVVPITVPALRERREDIPLLVRHFLQQFAERDGLPARSISDEALQRLSE 350 Query: 398 YSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLR 457 +PGNVREL + + R V+LA A I P + Sbjct: 351 LDWPGNVRELRNTMERLVILASAASISVADI-----DRLAGRRTAEPSGIGSLLDCNTFE 405 Query: 458 EATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 E +A +R + L N + AR L+ +NL++ +R L Sbjct: 406 EFKQAAERAFLLAKLRAFDWNVSETARALDMPRSNLYKKIERYAL 450 >UniRef50_Q1ZGP7 Formate hydrogen-lyase transcriptional activator n=1 Tax=Psychromonas sp. CNPT3 RepID=Q1ZGP7_9GAMM Length = 766 Score = 479 bits (1233), Expect = e-133, Method: Composition-based stats. Identities = 137/420 (32%), Positives = 212/420 (50%), Gaps = 24/420 (5%) Query: 107 SLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALS----NALL 162 S K+ + PL Q ++G + F + L+ IAA + A++ ++ Sbjct: 341 SHKLSSECVFPLLFRQQVLGVIKYGHRAEKYFSEERLDLLKQIAARISVAINYFQNSSKF 400 Query: 163 IEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKE 222 + + ++++ D T +I S M ++ + + +VA D VLI GETGTGKE Sbjct: 401 MMKSTPKDLMSVDKTEQSKAMFGGIISQSKAMREVFQRVLMVADCDSTVLILGETGTGKE 460 Query: 223 LVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGT 282 ++A IH AS R+ +V +NC+A+P + ES+LFGHVKGAFTGA++ + G+FE A + Sbjct: 461 MIANMIHNASNRSHKKMVKMNCSAVPSGLFESDLFGHVKGAFTGAVNQQVGRFEEAHKSS 520 Query: 283 LFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRA 342 FLDEIG++ L LQ K+LR LQ G+I+RVG + VDVR++AAT+ DL V FR Sbjct: 521 FFLDEIGDMPLQLQPKVLRALQEGEIERVGKHTIIPVDVRMIAATHCDLLSMVKDNSFRR 580 Query: 343 DLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPG 402 DL++RL+VFP+ +PPLRER +D+ LLA +F + + +S +L +PG Sbjct: 581 DLYYRLNVFPIRIPPLRERREDIPLLAKHFTQLFSKKMNRDIQSISPETLRILYSLPWPG 640 Query: 403 NVRELEHAIHRAVVLARATR------SGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNL 456 NVREL++ I RAV++ + E + E P Sbjct: 641 NVRELKNVIERAVIMNKGQVLHLPMSELKEYFPDIDPSPLCVQDGTKKEAGCFPDTVDLY 700 Query: 457 RE-----------ATEAFQRETIRQALAQNHHNWA---ACARMLETDVANLHRLAKRLGL 502 E + ++ +RE I + L + + A A L L +RLG+ Sbjct: 701 GENTIPKNVSAVKSVKSMEREQIIKVLKETNGIVAGPKGAAHRLGLKRTTLLSRMQRLGI 760 >UniRef50_B5YJY4 Response regulator HsfA n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YJY4_THEYD Length = 421 Score = 479 bits (1233), Expect = e-133, Method: Composition-based stats. Identities = 133/322 (41%), Positives = 188/322 (58%), Gaps = 11/322 (3%) Query: 182 VKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVY 241 V+ +IG+S M + I A +D NVLI+GE+GTGKELVA+AIH S R NP + Sbjct: 108 VEINGLIGISRIMEDVYCGIRKAALTDSNVLITGESGTGKELVARAIHNLSERKENPFIV 167 Query: 242 LNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLR 301 +NC A+P+++ ESELFG KGAFTGA + G E AD GTLF DEIG++S Q K+LR Sbjct: 168 INCTAIPDTLLESELFGFEKGAFTGANYTKKGLIEWADRGTLFFDEIGDVSPLFQTKILR 227 Query: 302 VLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRER 361 V+Q G+ R+G + ++VDVR +AATN+DL + G FR DLF+RL+V + +PPLR R Sbjct: 228 VIQEGEFIRIGGNHPVKVDVRFIAATNKDLSKACKEGVFREDLFYRLNVIHIEIPPLRSR 287 Query: 362 GDDVILLAGYFCEQC-RLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARA 420 +D+ L +F ++ R+ ++ ++ A + L YSFPGNVRELE+ I RA+ + Sbjct: 288 KEDIPSLTQFFIKKHSAKRKDINIKGITEEALDALMSYSFPGNVRELENIIERAIAFTNS 347 Query: 421 TRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWA 480 +E P L T P NLREA + F++E I AL ++ N + Sbjct: 348 --------VEITIKDLPAYLLKTQHSKKTP--HGNLREAVDNFEKELIWSALQKSRGNIS 397 Query: 481 ACARMLETDVANLHRLAKRLGL 502 A +L L R K+ + Sbjct: 398 KAAELLGIHRQQLQRKLKQFKI 419 >UniRef50_C3AI49 Sigma54 specific transcriptional regulator, Fis n=5 Tax=Bacillus RepID=C3AI49_BACMY Length = 465 Score = 478 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 150/485 (30%), Positives = 242/485 (49%), Gaps = 45/485 (9%) Query: 25 FQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLAKDVLGR---RFALEGHPRLEAIAR 81 L++++ + + + + + D + ++GR F L+ + Sbjct: 12 LHTLLSSVEEAISIVNTKGIMLYWNEAAEKMYDIKKEKIIGRNVQEFFLKEDIMNLKVLE 71 Query: 82 AGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFAGQ-NLIGALTLDGMQPDQFDV 140 VR D Y P + L P++ LIG+++++ Sbjct: 72 NQQPVR--------DIYHLPRPDKHVL----ISTTPIYNENNELIGSMSVEK-------- 111 Query: 141 FSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKE 200 ++ L S + ++QL+ Q + PF + + G + + + + Sbjct: 112 ----DITATIKLNEKLTSTSEELQQLKQQMIQNNRDDPF-----SNIKGNNLAIQHIIHD 162 Query: 201 IEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHV 260 ++ VA +D +LI+GE+G GKEL A+AIHEAS R+ + +NC A+P ++ ESELFG+ Sbjct: 163 MKKVAKTDATILITGESGVGKELFAQAIHEASLRSKKAFIPINCGAIPNALFESELFGYE 222 Query: 261 KGAFTGAISN-RSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRV 319 GA+TGA + GK E+AD GTLFLDE+GEL L +Q KLLR LQ +I R+G ++ Sbjct: 223 SGAYTGAAKGGKPGKIELADGGTLFLDEVGELPLDMQVKLLRALQEKEIYRIGGQTPKKI 282 Query: 320 DVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLR 379 DVR++AATNR L + VL G FR+DLF+RL+VF +PPLRER DD+ LA +F ++ + Sbjct: 283 DVRIIAATNRILEDMVLNGTFRSDLFYRLNVFTACIPPLRERTDDISYLAHHFFKEFSFK 342 Query: 380 QGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEV 439 + A L YS+PGN+REL + I R +VL + + IL+ Sbjct: 343 YNKPTPFVHQEATKRLHAYSWPGNIRELRNFIERLIVLHEGSEIYESDILK--------- 393 Query: 440 TLPTPEVAAVPVVKQNLR--EATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLA 497 LP + + PV + L + E+ ++ I Q L Q + N + A+ L ANL++ Sbjct: 394 LLPQAKSFSEPVSQTTLSLTDERESLEKTRILQTLQQTYGNKSITAKKLGMSRANLYKKI 453 Query: 498 KRLGL 502 K+ + Sbjct: 454 KKYRI 458 >UniRef50_A8ZV27 Transcriptional regulator, Fis family n=2 Tax=Desulfobacteraceae RepID=A8ZV27_DESOH Length = 510 Score = 478 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 140/344 (40%), Positives = 201/344 (58%), Gaps = 21/344 (6%) Query: 162 LIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGK 221 L +QLE++ + E +IG S G+ + +IE +A SD VL+ GETGTGK Sbjct: 178 LKQQLEAERAYLQEEIKLE-YNHEHIIGQSDGLKYVLYKIEQIADSDTTVLVLGETGTGK 236 Query: 222 ELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNG 281 ELVA+AIH S R ++ +NCAALP ++ ESELFGH KGAFTGA + +G+FE+A+ Sbjct: 237 ELVARAIHNLSRRKNRTMLKVNCAALPTNLIESELFGHEKGAFTGAHARHTGRFEVANGT 296 Query: 282 TLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFR 341 TLFLDEIGEL L LQ KLLRVLQ G+ +R+G +VD R++AATNR+L EEV G FR Sbjct: 297 TLFLDEIGELPLELQPKLLRVLQDGEFERLGSSHSTKVDARIIAATNRNLEEEVRNGNFR 356 Query: 342 ADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFP 401 DL++RL+VFP+++PPLR+R DD+ LL ++ ++ R G + + + LQ Y +P Sbjct: 357 EDLWYRLNVFPITMPPLRDRLDDIPLLVEFYVKKISRRMGKTIETIPSKIMETLQAYPWP 416 Query: 402 GNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATE 461 GNVRELE+ + RAV+ + T+ + P L + E + Sbjct: 417 GNVRELENVLERAVINSSGTK-----LRLVDELKRPFRGLSSSE------------KTLA 459 Query: 462 AFQRETIRQALAQNHHN---WAACARMLETDVANLHRLAKRLGL 502 A +R+ I + L Q + A +L D + L ++L + Sbjct: 460 AVERDHIVRVLEQTQWKVGGKNSAAEILGLDRSTLRARMRKLNI 503 >UniRef50_A8IQ96 Transcriptional regulator n=18 Tax=Proteobacteria RepID=A8IQ96_AZOC5 Length = 694 Score = 478 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 158/389 (40%), Positives = 220/389 (56%), Gaps = 21/389 (5%) Query: 117 PLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDA 176 PL LIGA+ + + + +E+LR A L E+LE +N + Sbjct: 314 PLRDRGRLIGAVVVFRDVTQKREA--NEQLR------AALAEVDRLRERLEMENAYLQEE 365 Query: 177 TPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAV 236 E +IG S + ++ +++++VA +D VLI+GE+GTGKEL+A+AIH+AS R Sbjct: 366 IRAE-TSHRGIIGRSEAIKKVLRQVDLVAPTDATVLITGESGTGKELIARAIHDASERRE 424 Query: 237 NPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQ 296 PL+ +NCAA+P + ESE FGHV+GAFTGA+ +R G+FE+AD GTLFLDE+GE+ L LQ Sbjct: 425 RPLIRVNCAAIPRELFESEFFGHVRGAFTGALRDRVGRFELADRGTLFLDEVGEIPLELQ 484 Query: 297 AKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVP 356 +KLLRVLQ G +R+G++R +VDVR++AATNRDL+ V AGRFR DLF+RL V P+ Sbjct: 485 SKLLRVLQEGQFERIGEERTRQVDVRIIAATNRDLKAAVRAGRFREDLFYRLDVMPIESV 544 Query: 357 PLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVV 416 PLRER +D+ LLA +F + R + + LSAG LQ Y +PGNVREL++ I R ++ Sbjct: 545 PLRERREDIPLLAAHFLDGVRRKPADGPLQLSAGDMRRLQTYDWPGNVRELQNVIERGII 604 Query: 417 LARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNH 476 LAR R H P+ P P + R +I AL Sbjct: 605 LARNGR---------LHIDLPDREAPATAQPVPPSAELETEADRRLRLRTSILAALEAAG 655 Query: 477 HNWA---ACARMLETDVANLHRLAKRLGL 502 + A L L K LG+ Sbjct: 656 GKVSGPGGAAERLGLKPTTLASRMKTLGI 684 >UniRef50_A0YEC8 Transcriptional regulatory protein n=2 Tax=Proteobacteria RepID=A0YEC8_9GAMM Length = 639 Score = 478 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 140/389 (35%), Positives = 213/389 (54%), Gaps = 16/389 (4%) Query: 117 PLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDA 176 P+ ++GA+ + + AL L ++LE +N + Sbjct: 243 PILVNGYILGAVVIFRDVSQKKAYKK--------ALLEALAEVESLKDRLEMENAYLQEE 294 Query: 177 TPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAV 236 + ++IG S + + ++I++VA + VLI+GE+GTGKEL+A+AIHE+S R+ Sbjct: 295 IKSK-FNHHRIIGSSAPLQNILQQIDLVAPTKATVLITGESGTGKELLARAIHESSGRSG 353 Query: 237 NPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQ 296 L+ +NCAA+P+ + ESE FGHVKGAFTGA S+R G+FE+AD G++FLDE+GE+ L LQ Sbjct: 354 RSLIRVNCAAIPQDLFESEFFGHVKGAFTGASSDRPGRFELADGGSIFLDEVGEIPLHLQ 413 Query: 297 AKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVP 356 KLLRVLQ + +RVG+ VDVR++ ATNRDL++ V G FR DL+ RL++FP+ Sbjct: 414 GKLLRVLQEQEFERVGEAITRTVDVRIITATNRDLKQMVAEGLFREDLYFRLNIFPIESI 473 Query: 357 PLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVV 416 PLR+R DD+ L +F Q +R S + + L+ Y +PGNVRELE+ I R V+ Sbjct: 474 PLRQRKDDIPQLTQHFLGQAAIRANKSDLRIPLHEIEKLKAYDWPGNVRELENVIERQVI 533 Query: 417 LARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNH 476 L R +L + + A E + + + LR+ +++ I +AL Sbjct: 534 LIRGNIVRFNNLLSSDNNAIIEGAGADKDNKYEILTEPQLRQ----MEKQNIIRALHYCK 589 Query: 477 HNW---AACARMLETDVANLHRLAKRLGL 502 A +L L K+LG+ Sbjct: 590 GRVFGDGGAADLLSIKPTTLSSRIKKLGI 618 >UniRef50_B5Y7I9 Acetoacetate metabolism regulatory protein AtoC (Ornithine/argininedecarboxylase inhibitor) (Ornithine decarboxylase antizyme) n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y7I9_COPPD Length = 459 Score = 478 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 164/462 (35%), Positives = 240/462 (51%), Gaps = 29/462 (6%) Query: 40 ASALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYD 99 L+ D L L++ L A +G L ++ A V D +P D Sbjct: 19 PVVLVADDEPSIRELVQTVLSQQSLEVVTASDGEEAL-KVSEAQVVDCALVDIRMPK-VD 76 Query: 100 GLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDE-ELRLIAALAAGALS 158 GL E L + + + A +T++ M+ +D + ++ +A AL Sbjct: 77 GLAV-LEQLVLKNIPVIVITAYGTS--DVTIEAMRRGAYDFITKPFDIDDLAEKVRKALD 133 Query: 159 NALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETG 218 + E L + M+G+S M ++ K I VA++D+ VLI+GE+G Sbjct: 134 YSKTTEVL---------PIKGSKETSSLMVGMSAAMQEVYKLIGRVASTDVTVLITGESG 184 Query: 219 TGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMA 278 TGKELV++AIH SPR P V +NCAA+PE + ESELFG+ KGAFTGA + GKFE+A Sbjct: 185 TGKELVSRAIHYNSPRNKGPFVVVNCAAIPEDLLESELFGYEKGAFTGADERKIGKFELA 244 Query: 279 DNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAG 338 ++GT+ LDEIG++S LQAK+LRVLQ I+R+G R + VDVRVLAATN+DL+ V +G Sbjct: 245 NHGTILLDEIGDMSPMLQAKILRVLQEHVIERIGGTRSIPVDVRVLAATNKDLQSLVKSG 304 Query: 339 RFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHY 398 FR DL+ RL+V + +PPLRER +D+ LLA +F ++ ++ L Y Sbjct: 305 SFREDLYFRLNVVQIQLPPLRERKEDIPLLADHFIKKYAAETSKEVTGVTPEVMAALMAY 364 Query: 399 SFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLRE 458 +PGNVRELE+ I RAV L +V+ P+V P P + + L+E Sbjct: 365 DYPGNVRELENIIARAVALCSGKVLTLDVLP-------PQVVEPKPAL-------RPLKE 410 Query: 459 ATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRL 500 +R RQA+A + A A +L+ D+ + K Sbjct: 411 VLLEAERRAFRQAVAVAGLDPQAVADLLQVDLDYAKKRLKEW 452 >UniRef50_D2R1I6 Sigma 54 interacting domain protein n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R1I6_9PLAN Length = 539 Score = 478 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 178/450 (39%), Positives = 256/450 (56%), Gaps = 26/450 (5%) Query: 66 RRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFAGQNLI 125 RRF + G ++ IA+ G + AD + + ++ + G PL ++ Sbjct: 101 RRFPV-GVRKVGQIAKTGRSLEV-ADVAHDHGWAADRTWISNERIASFAGHPLLHRGEVL 158 Query: 126 GALTLDGMQPDQFDVFSDEELRLIAALAAGALSNAL-------LIEQLESQNMLPGDATP 178 G L L Q F E LR+IA A A++NA L ++LE +N + Sbjct: 159 GVLGLFARQSPGESCF--EWLRMIADHLAAAIANARALDEIDSLKKRLEQENEYLREEVQ 216 Query: 179 FEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNP 238 + +IG SP + ++IE+VA +D VLI GE+GTGKE+VA+ +H S RA P Sbjct: 217 -QITSFGDLIGQSPSLQATTRQIELVAPTDSAVLILGESGTGKEVVARELHRRSRRADRP 275 Query: 239 LVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAK 298 L+ +NCAA+P + ESE FGH KG+FTGA+ +R+G+FE+AD GTLFLDEIGE+ L LQAK Sbjct: 276 LIKVNCAAIPRELYESEFFGHAKGSFTGALRDRAGRFELADRGTLFLDEIGEIPLDLQAK 335 Query: 299 LLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPL 358 LLRVLQ G+++R+G++R R+DVR++AATNR+LR E AGRFR DLF+RLSVFP+ +PPL Sbjct: 336 LLRVLQEGELERIGEERTRRIDVRIIAATNRNLRTEAEAGRFRQDLFYRLSVFPMELPPL 395 Query: 359 RERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLA 418 R+R +D+ LLA ++ ++ + G R L+ LQ Y +PGNVREL+H + RA ++A Sbjct: 396 RKRVEDIPLLAEHYLDRFSRQLGRPRPRLTLAHVQDLQRYPWPGNVRELQHVLERACIVA 455 Query: 419 RATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATE--AFQRETIRQALAQNH 476 + F FP+ L E A P Q++ A E + IR+ALA ++ Sbjct: 456 TDGK---------LQFDFPKDQLKRREEPAEPSSPQHILTAAELRELEASNIRKALAASN 506 Query: 477 HN---WAACARMLETDVANLHRLAKRLGLK 503 A L L K LG++ Sbjct: 507 GKIYGKNGAASRLAMKPTTLASRIKALGIR 536 >UniRef50_C0Q938 Sigma-54 dependent DNA-binding response regulator n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0Q938_DESAH Length = 525 Score = 478 bits (1231), Expect = e-133, Method: Composition-based stats. Identities = 146/513 (28%), Positives = 251/513 (48%), Gaps = 23/513 (4%) Query: 6 DVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLAKDVL- 64 D A+ + + + + L+Q + + Y+ I + + + Sbjct: 7 DFFRQTALRISSSLDINKAMRNCMNYLKQHIPASGMYFVVYEPGLNIINILASIMPKKIQ 66 Query: 65 --GRRFALEGHPR---LEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLF 119 RR ++ + + + + ++ P+P ++ + + + + L Sbjct: 67 GSARRISIPAEYQDDLKKRFSEESQIKIINDLNDEPEPLQKIVNLVFPFEC-SLLEMHLK 125 Query: 120 AGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPF 179 IG + ++ F + L+ A A+SN L ++++ N + D + Sbjct: 126 LDGTRIGLFGVLSEGKHRYSEFHSHLITLVHEPFAVAISNILQHQEIQRLNKILSDDNRY 185 Query: 180 -----EAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPR 234 + +IG G+ + + +E VA +D V+I GETGTGKE++A AIH +S R Sbjct: 186 LHREMMHLTGDTIIGSKFGLKDVMRMVEHVAPTDSPVMIMGETGTGKEVIANAIHLSSRR 245 Query: 235 AVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLA 294 + + +NC A+P+++ +SELFGH KGAFTGA+S + G+FE A NGT+FLDE+GEL L Sbjct: 246 KDSAFIKINCGAIPDNLIDSELFGHEKGAFTGAVSRKRGRFERAHNGTIFLDEVGELPLQ 305 Query: 295 LQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLS 354 Q +LLRVLQ +I+RVG + VDVR++AAT+++L E V G+FRADL+ RL+VFP+ Sbjct: 306 AQVRLLRVLQQHEIERVGGSETIPVDVRIVAATHKNLEEMVRTGQFRADLWFRLNVFPIH 365 Query: 355 VPPLRERGDDVILLAGYFCEQCRLRQG-LSRVVLSAGARNLLQHYSFPGNVRELEHAIHR 413 +PPLR R D+ L YF E+ + R L+ G +Q Y +PGNVREL++ + R Sbjct: 366 IPPLRHRTIDLPALTDYFLEKKSMELKIRKRPSLAPGTMEKMQAYEWPGNVRELQNLVER 425 Query: 414 AVVLARATRSGDEVILEAQHFAFPEVTLPTP-EVAAVPVVKQNLREATEAFQRETIRQAL 472 A++ + ++ + P++ P P E + + + I++ L Sbjct: 426 ALIFNQMKNDESQLTFD------PQLINPIPKENMTLKREDGKIIRPLDEVMANHIQKVL 479 Query: 473 AQNHHN---WAACARMLETDVANLHRLAKRLGL 502 Q + A +L+ + L K+L + Sbjct: 480 DQTNGKVEGKNGAASLLKINPGTLRGRMKKLKI 512 >UniRef50_Q1NIP6 Response regulator receiver n=2 Tax=Deltaproteobacteria RepID=Q1NIP6_9DELT Length = 461 Score = 478 bits (1231), Expect = e-133, Method: Composition-based stats. Identities = 159/431 (36%), Positives = 227/431 (52%), Gaps = 16/431 (3%) Query: 78 AIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFA-----GQNLIGALTLDG 132 A R D +D +P P +GL ++ ++ + + L ++ Sbjct: 39 ARLRQEDFDLLISDIRMPPP-NGLELLDQARQLQPELPVVLVTAFASPDDAVL------A 91 Query: 133 MQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSP 192 M+ FD + +S AL + + L ++ +IG SP Sbjct: 92 MKNGAFDYLTK---PFKVDEIKDIVSTALSSRRQLPEPTLKTNSEVPANGGFVGIIGNSP 148 Query: 193 GMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVA 252 M ++ + I VA + NVLI GE+GTGKELVA+AIH+ SP + V + C+A+PES+ Sbjct: 149 EMLKIYEVIRRVAPTQANVLIHGESGTGKELVARAIHQLSPAVQHQFVPIICSAIPESLF 208 Query: 253 ESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVG 312 ESELFGH KGAFTGA +NR+G FE A+ GT FLDEIGEL+ Q KLLRVLQ +I+RVG Sbjct: 209 ESELFGHAKGAFTGATTNRTGLFEQANYGTAFLDEIGELTPLTQTKLLRVLQEREIKRVG 268 Query: 313 DDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYF 372 + +R++ R+++ATNRDL EEV AGRFR DLF+RL+V P+ VPPLRER DV LL +F Sbjct: 269 ESVAIRINFRMISATNRDLEEEVAAGRFREDLFYRLAVVPIRVPPLRERKSDVPLLVEHF 328 Query: 373 CEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDE-VILEA 431 + G +S+ A LL +Y FPGNVRELE+ I R V + + E + L Sbjct: 329 LAKYSRLFGKDIRKISSYALELLMNYDFPGNVRELENIIERGVAMENSQIILPESLTLTG 388 Query: 432 QHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVA 491 + V + L A F+R+ I +AL + ++ A +L T Sbjct: 389 RRHGGQPAPADDRGSLEADVFNRGLEPALTDFERQMIIKALQKAGNSKTRAAELLNTSFR 448 Query: 492 NLHRLAKRLGL 502 +L K+ + Sbjct: 449 SLRYKIKKYEI 459 >UniRef50_B8IZ33 Two component, sigma54 specific, transcriptional regulator, Fis family n=15 Tax=Desulfovibrionales RepID=B8IZ33_DESDA Length = 459 Score = 478 bits (1231), Expect = e-133, Method: Composition-based stats. Identities = 138/378 (36%), Positives = 201/378 (53%), Gaps = 16/378 (4%) Query: 129 TLDGMQPDQFDV----FSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQ 184 ++ M+ FD FS++EL L ++ NA+ + + Q L + + Sbjct: 91 AVELMKYGAFDYITKPFSNDELLL-------SIHNAVELARAHRQYRLLQEVME-DRYGV 142 Query: 185 TQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNC 244 +++G S + + +E A S VLI+GE+GTGKEL+A+AIH SPR NP V +NC Sbjct: 143 HKIVGRSRAIRDVLIMVERAAPSRSTVLITGESGTGKELIARAIHYTSPRKDNPFVSVNC 202 Query: 245 AALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQ 304 AL V ESELFGH KG+FTGA++ R G+FE AD GTLFLDEI EL+ LQ KLLRVLQ Sbjct: 203 MALNPGVLESELFGHEKGSFTGAVAMRRGRFEQADGGTLFLDEIAELTPDLQVKLLRVLQ 262 Query: 305 YGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDD 364 +RVG + VD+RV+AATN+DL V G FR DL++RL+V + +PPLRER +D Sbjct: 263 ERRFERVGGGEEIEVDIRVVAATNKDLAAMVEKGTFRDDLYYRLNVVQIPLPPLRERRED 322 Query: 365 VILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSG 424 + LL +F ++ + S A N L Y +PGN+R+LE+ + +VL T Sbjct: 323 IPLLVAHFVDKVCTDNTMPAKTFSTEALNYLTGYEWPGNIRQLENVVESCLVLVPGTVIN 382 Query: 425 DEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACAR 484 ++ + + V+ +L + E + IR+AL + A Sbjct: 383 ----VDNLPAEIRDEESQFKSAVDLLPVQLDLADTLEKIEAALIRRALVRADLVQVKAAE 438 Query: 485 MLETDVANLHRLAKRLGL 502 L + L K+ + Sbjct: 439 YLGISKSLLQYKLKKYAI 456 >UniRef50_D2R4Q9 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R4Q9_9PLAN Length = 644 Score = 478 bits (1230), Expect = e-133, Method: Composition-based stats. Identities = 168/500 (33%), Positives = 254/500 (50%), Gaps = 14/500 (2%) Query: 5 VDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLAKDVL 64 ++ + + + ++ + + T ++LE + +++ +D + L + Sbjct: 150 LEAIVGLVAQWRQHSAMEPLLVSIAETSTRLLEAERASIFLWDRASKTLVGRPALGVEGG 209 Query: 65 GRRFALEGHPRLEAIARAGDVVRFPADSELPD-PYDGLIPGQESLKVHACVGLPLF-AGQ 122 R E + + +G+V R AD E D + + + + + +PL AG Sbjct: 210 ELRIP-ENAGIVGQVVASGEVRRVDADIEADQREVDRRVDKKLKFETRSILCVPLRGAGG 268 Query: 123 NLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAV 182 L+GA + + F + L +AA AA AL + IE L D A Sbjct: 269 VLLGAFEVLNKRQGNFTRDDELALVELAAHAATALESTQTIENLVQTRKQLVD----HAA 324 Query: 183 KQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYL 242 +++G + L+ ++ VA +DL VLI GE GTGKE+VA++IH S R P + + Sbjct: 325 SGVELVGECASIGALRSAVKRVADTDLAVLILGENGTGKEVVAQSIHYLSKRRHEPFIAV 384 Query: 243 NCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRV 302 NCAA+ ES+ ESELFGH KGAFT A R GKFE+A +GTLFLDEIG++SL QAKLLRV Sbjct: 385 NCAAISESLLESELFGHEKGAFTDAREMRVGKFELAADGTLFLDEIGDMSLGGQAKLLRV 444 Query: 303 LQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERG 362 L+ + RVG + RVLAATN++L E V A RFR DLF RL+V L +PPLR RG Sbjct: 445 LEEKVVVRVGGSVPIPTKARVLAATNQNLAELVRAKRFREDLFFRLNVVSLDLPPLRARG 504 Query: 363 DDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATR 422 +D++LLA +F +Q R +A AR L + +PGN+REL + + R LA Sbjct: 505 EDIVLLAEHFLKQFAARARRRLPKFTAAARKRLLMHPWPGNIRELRNLMERLAYLA---- 560 Query: 423 SGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAAC 482 D+ ++A F +P + + L +AT FQ E I + + N Sbjct: 561 PEDQDKIDAGDLEFILSPGTSPATS---LGDGTLADATREFQMEFIHKTIESTRGNMTLA 617 Query: 483 ARMLETDVANLHRLAKRLGL 502 A + +NL+R ++L + Sbjct: 618 AEKMGLQRSNLYRKMRQLQM 637 >UniRef50_D0LMB6 Sigma 54 interacting domain protein n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LMB6_HALO1 Length = 507 Score = 478 bits (1230), Expect = e-133, Method: Composition-based stats. Identities = 170/503 (33%), Positives = 249/503 (49%), Gaps = 28/503 (5%) Query: 15 LQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDG--LAKDVLGRRFALEG 72 L + + L +++ D +A+ + +A G ++ V R AL Sbjct: 19 LASKRAPDLILAQALEALSHLIDYDLAAVYELHGDELRVVAAAGPLASEQVRAHRLALSK 78 Query: 73 HPRLEAIARAGDVVRFPADS--ELPDPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTL 130 P + + V F + DPYDG++ H+C+ +PL A + +G +T+ Sbjct: 79 FPNIRRVLEVRRPVAFEDSDHADHGDPYDGVLDLPHG---HSCMVIPLRADEADMGIITI 135 Query: 131 DGMQPDQFDVFSDEELRLIAALAAGAL----SNALLI---EQLESQNMLPGDATPFEAVK 183 D ++ + +D + + L + AL A+L +QL N L + + Sbjct: 136 DRLRCETYDARAVRLADVYGQLVSLALWFANREAILRRNNQQLSEHNRLLLEESGATWAC 195 Query: 184 QTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLN 243 + G S M +L + + VA S+ VL+ GETGTGKEL+A+AIHE S RA P + LN Sbjct: 196 RRLEAGASAQMHELVAQAKKVAVSNAPVLVLGETGTGKELLAQAIHEWSARASGPFIKLN 255 Query: 244 CAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVL 303 CAA+PE++ ESELFGHV+GAF+GA S R G+F A+ GTL LDEIGEL L QAKLLRVL Sbjct: 256 CAAIPENLVESELFGHVRGAFSGAESARRGRFVTANRGTLLLDEIGELPLPAQAKLLRVL 315 Query: 304 QYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGD 363 Q G ++ VG D RVDVR++AATN DL V AG FR DL++RL+ FPL VPPLRER Sbjct: 316 QEGVLEPVGSDDSYRVDVRIVAATNVDLVAAVDAGWFRRDLYYRLATFPLQVPPLRERRA 375 Query: 364 DVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRS 423 D+ +A + G LSA A L+ +PGNVREL + + RA ++ +A Sbjct: 376 DIAPIARDVLRELHASTGRGPWTLSAPAVEALERNGWPGNVRELRNVLERATIIVQAGEI 435 Query: 424 GDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNW---A 480 G + E+ E+ A +R + + L ++ Sbjct: 436 GAAKLRLEVAPPSRELAASCAELPDF-----------SANERAYLARLLERSGGKLYGEG 484 Query: 481 ACARMLETDVANLHRLAKRLGLK 503 A + + L + GL+ Sbjct: 485 GAAELSGLKPSTLRSKLVKHGLR 507 >UniRef50_Q1PYM7 Similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYM7_9BACT Length = 469 Score = 478 bits (1230), Expect = e-133, Method: Composition-based stats. Identities = 136/384 (35%), Positives = 213/384 (55%), Gaps = 17/384 (4%) Query: 129 TLDGMQPDQFDVFSDE-ELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQTQM 187 ++ M+ +D +L + ++ AL L +++ + F+ + Sbjct: 91 AVEVMRLGAYDYLEKPFKLDRLRSVVEKALRRQGLRQEVLE---IKEKQWTFDEESDGII 147 Query: 188 IGLSPGMTQLKKEIEIVAASDLN-VLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAA 246 IG SP M ++ I+ VA S VLI GE+GTGKELVA+A+H S R V +NCAA Sbjct: 148 IGNSPQMKEIYSLIKQVAKSSSTTVLIQGESGTGKELVARAVHRLSARKSGRFVDINCAA 207 Query: 247 LPESVAESELFGHVKGAFTGA-ISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQY 305 L ES+ E+ELFG+ KGAFTGA + + G FE+AD GT+FLDEIGE+ + LQAKLLR+LQ Sbjct: 208 LTESLLEAELFGYEKGAFTGAATAGKPGLFEIADKGTVFLDEIGEMGVLLQAKLLRILQE 267 Query: 306 GDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDV 365 +RVG + +++DVR++A+TNR+L EE+ +G FR DL++RL V P+ VPPLRER +D+ Sbjct: 268 RQFKRVGGIQDIKIDVRIIASTNRNLEEEIASGNFRKDLYYRLKVLPIYVPPLRERREDI 327 Query: 366 ILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGD 425 +LL YF + G + + +L Y +PGN+REL++ + R V++A + Sbjct: 328 MLLVKYFIHKYNNEFGKNICDIPPDTERILLEYGWPGNIRELKNVVERGVLIANGSALSP 387 Query: 426 EVIL-------EAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHN 478 + + E++ A V T V++ + ++L +++ I L + Sbjct: 388 KYVANISVGKKESESLAGITVDGNTDCVSSDGLDARSL----AFMEKQHIENVLKETSWR 443 Query: 479 WAACARMLETDVANLHRLAKRLGL 502 AR+L + L+ K G+ Sbjct: 444 RTEAARVLGINRTTLYNKIKEYGI 467 >UniRef50_C1F1R9 Mutant NtrC-like activator n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F1R9_ACIC5 Length = 495 Score = 477 bits (1229), Expect = e-133, Method: Composition-based stats. Identities = 152/456 (33%), Positives = 227/456 (49%), Gaps = 19/456 (4%) Query: 53 PLAIDGLAKDVLGRRFALEGHPR-LEAIARAGD--VVRFPADSELPDPYDGLIPGQESLK 109 P A+ GLA+ V + E +EA+ + D ++P DG+ + + Sbjct: 34 PHALTGLAELVSAWDYRTETARDGIEALEKVRGWQPAIVVTDLKMPR-MDGMQLLERLNQ 92 Query: 110 VHACVGLPLFAGQNLIGALTLDGMQPDQFDVF----SDEELRLIAALAAGALSNALLIEQ 165 + + + Q I + ++ M+ FD LR I + + Q Sbjct: 93 MDGSRAVIVLTAQGSIES-AVEAMKIGAFDYLQKPVDSVRLRTILSNVS---------RQ 142 Query: 166 LESQNMLPGDATPFEAVKQTQ-MIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELV 224 LE Q + T ++ M+G S M + IE VA ++++VLI+GE+GTGKELV Sbjct: 143 LEMQREMAATRTRLRSMSGLGLMVGTSQPMKDVFSLIERVAPTNVSVLITGESGTGKELV 202 Query: 225 AKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLF 284 AK +HE SPR P V +NCAA+PE++ ESE+FGH KGAFTGAI R+G FE+A+ GTL Sbjct: 203 AKTLHELSPRKNKPFVAVNCAAIPETLIESEIFGHEKGAFTGAIERRAGCFELAEEGTLL 262 Query: 285 LDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADL 344 LDEIGE+ + QAKLLRVL+ +R+G +DVRVLAATN++ + V G R DL Sbjct: 263 LDEIGEMPIGTQAKLLRVLEDRRYRRLGSKVETPIDVRVLAATNKNPDQAVADGELRGDL 322 Query: 345 FHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNV 404 ++RL+VF + +PPLRE +D+ +A + + + + L Y +PGNV Sbjct: 323 YYRLNVFNIHMPPLREHKEDIPAIAQRMIADMTSKHDRAIEGMDDEMQARLLSYDWPGNV 382 Query: 405 RELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQ 464 REL + + RAV+L R + + A P T V+ + + + Sbjct: 383 RELRNTMERAVILCTGDRLQAQHLPPGFGTARPLKTAAVTAEPPANAVQVEVGTTVDEAE 442 Query: 465 RETIRQALAQNHHNWAACARMLETDVANLHRLAKRL 500 R I + L H+N A +L + LH K Sbjct: 443 RLLILKTLESTHNNKTRAAEILGISLKTLHNKLKEY 478 >UniRef50_Q6MMW8 Acetoacetate metabolism regulatory protein atoC n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MMW8_BDEBA Length = 470 Score = 477 bits (1229), Expect = e-133, Method: Composition-based stats. Identities = 131/372 (35%), Positives = 201/372 (54%), Gaps = 9/372 (2%) Query: 132 GMQPDQFDVFS-DEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQTQMIGL 190 ++ +D + + +A + +L LI L N + D +++++G Sbjct: 98 AIKEGAYDYVEKPVQPQQLAEIVRKSLEARDLISSLAMSNPVFDDDI------ESEIVGG 151 Query: 191 SPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPES 250 S M ++ I + D VL+ GE GTGKELVA+AIH SPR V +NC A+PE+ Sbjct: 152 SSKMKEVFNLIYRLCKVDTTVLVRGENGTGKELVARAIHFNSPRKSGAFVAINCGAIPEN 211 Query: 251 VAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQR 310 + ESELFGH KGAFTGA+ + GKF++A+NGTLFLDEIGEL +Q KLLRVLQ Sbjct: 212 LMESELFGHEKGAFTGAVERKIGKFQLANNGTLFLDEIGELRPDMQVKLLRVLQERKFTP 271 Query: 311 VGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAG 370 VG +R ++ R++AATNR+L + + G FR DLF+RL+V P+ +PPLRER DD+ LAG Sbjct: 272 VGSNREVKTTTRIIAATNRNLEKMMEEGEFREDLFYRLNVMPIFLPPLRERADDIEALAG 331 Query: 371 YFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILE 430 F ++ + G ++ A ++L+ Y +PGN+RELE+ I R+ ++ + + + + + Sbjct: 332 NFIKKFSKQHGRQITAITPEALDMLKSYRWPGNIRELENIIERSFIVENSHQITVDSLPD 391 Query: 431 AQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDV 490 + + T V + E ++E I AL N+ Sbjct: 392 SIKLTPKDGADKTASVGY--SGPLDFDAFKEEMEKEFIVSALKANNGRINQTVAQANIPK 449 Query: 491 ANLHRLAKRLGL 502 L R ++ G+ Sbjct: 450 NTLLRKIRKYGI 461 >UniRef50_A6EHC6 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Pedobacter sp. BAL39 RepID=A6EHC6_9SPHI Length = 646 Score = 477 bits (1229), Expect = e-133, Method: Composition-based stats. Identities = 135/337 (40%), Positives = 195/337 (57%), Gaps = 16/337 (4%) Query: 170 NMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIH 229 L P E+ +IG S + + ++I++VAA D +VLI GE+GTGKE VA IH Sbjct: 318 QPLKEVQVPLES-DFHGIIGQSSLLKDVFRKIQLVAADDTSVLILGESGTGKERVAHTIH 376 Query: 230 EASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIG 289 + SPR P+V +NCAALP ++ ESELFGH KGAFTGA R GKFE AD G++FLDEIG Sbjct: 377 KLSPRKSKPMVTVNCAALPLTLIESELFGHEKGAFTGANDKRIGKFEQADGGSIFLDEIG 436 Query: 290 ELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLS 349 EL L Q KLLRVLQ +I+R+G + +++VR++ ATNR+L +EV GRFR DL++RL+ Sbjct: 437 ELPLEAQVKLLRVLQEKEIERLGGNGTKKINVRIITATNRNLEKEVAEGRFRLDLYYRLN 496 Query: 350 VFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEH 409 VFP+ +P LR+R +D+ LL+ +F ++ +SA + LQ Y +PGN+RELEH Sbjct: 497 VFPIELPSLRQRKEDIPLLSHHFIKKYSKNASAQIGGVSAASMEELQQYDWPGNIRELEH 556 Query: 410 AIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIR 469 I R+V+L++ ++ +A + ++ E +R+ I Sbjct: 557 LIERSVLLSKEEEITTIIVPTTTP-----------SLAGSNSGEFRIK-TMEEMERDHIL 604 Query: 470 QALAQNHHNW---AACARMLETDVANLHRLAKRLGLK 503 L A +L L+ K+LG+K Sbjct: 605 SILKMCKGKVFGPGGAAEILNMPSTTLNSKIKKLGIK 641 >UniRef50_A0LFW8 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Bacteria RepID=A0LFW8_SYNFM Length = 472 Score = 477 bits (1229), Expect = e-133, Method: Composition-based stats. Identities = 152/458 (33%), Positives = 240/458 (52%), Gaps = 7/458 (1%) Query: 43 LLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLI 102 L+ D + + L L+ +++ ++ + + D D +P DGL Sbjct: 6 LMVDDEQDMLSLLSRILSDRTDHEITSVDDPLQVTELLKKNDYDLVITDLRMP-GRDGLG 64 Query: 103 PGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALL 162 + + + + + I + ++ + FD + + AL Sbjct: 65 VMEAVKQKNPNTAVIIMTAYGTIES-AIEATRKGAFDYVTK---PFRKERILHVVDQALK 120 Query: 163 IEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKE 222 +QL+ +N + ++ + +IG S M L +I+ VA + VLI+GE+GTGKE Sbjct: 121 WQQLQKENTYLRERLEGKS-QFASLIGSSRAMRTLHNQIDRVAKTSATVLITGESGTGKE 179 Query: 223 LVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGT 282 LVA+ +H+ S R + LNC+ LPES+ ESELFGH++G+FTGA+ ++ G E A++GT Sbjct: 180 LVARELHKHSLRKDEQFIPLNCSTLPESIIESELFGHLRGSFTGALRDKKGLIEEANHGT 239 Query: 283 LFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRA 342 LFLDEIG+LS+A+Q KLLR+LQ G+ + +G + RVD+R +AATN++L E++ G FR Sbjct: 240 LFLDEIGDLSMAMQVKLLRLLQEGEYKAIGSNTIRRVDIRFIAATNQNLHEKIRRGEFRE 299 Query: 343 DLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPG 402 DLF+RL+V + VPPLRER DD+ LL F E+ + + +S N L +PG Sbjct: 300 DLFYRLNVINIVVPPLRERLDDIPLLVHSFLEKYNVLHHKNIKRVSPVTLNALMQRDWPG 359 Query: 403 NVRELEHAIHRAVVLARA-TRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATE 461 NVRELE+ I R V++A T ++V L + E L + K+ + E Sbjct: 360 NVRELENTIERGVIMASGNTLETEDVTLPCREAPSSETPLFSEGDIYSMPFKEAKDKLIE 419 Query: 462 AFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKR 499 FQ + I +ALA++ N + AR LHRL + Sbjct: 420 EFQSQYISKALARHSGNVSQAARESGLKRQYLHRLMRE 457 >UniRef50_Q1IRB0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IRB0_ACIBL Length = 458 Score = 477 bits (1229), Expect = e-133, Method: Composition-based stats. Identities = 153/415 (36%), Positives = 229/415 (55%), Gaps = 6/415 (1%) Query: 88 FPADSELPDPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELR 147 D +LP G+ +L V + + G + D ++ + F + Sbjct: 49 VLTDLKLP-GGSGMDVLSAALDSDPMVPVVVM---TAFGTIA-DAVEAMRAGAFDFIQKP 103 Query: 148 LIAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAAS 207 + L A+ ++L N++ + + ++IG P M +E++ +A S Sbjct: 104 IDLTHLKLLLERAVERQRLMRDNVVLREE-YARKMGFPRIIGEHPTMQNSAREMQRIAGS 162 Query: 208 DLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGA 267 D VL+ GE+GTGKEL A+AIH+ S R+ P V LNCAA+PE + E+ELFGH KGAFTGA Sbjct: 163 DSTVLLLGESGTGKELFARAIHQLSIRSTQPFVALNCAAMPEGLIENELFGHEKGAFTGA 222 Query: 268 ISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAAT 327 + +SGKFEMA+ GT+FLDEIGEL L LQ+KLLRVL+ ++R+G L++DVRV+AAT Sbjct: 223 NTRKSGKFEMANRGTIFLDEIGELPLNLQSKLLRVLEEHVVERLGSTMPLQLDVRVVAAT 282 Query: 328 NRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVL 387 NR+L + V AG FR DL++RL+VFP+ +PPLRERG+DVIL+A +F R R+ L Sbjct: 283 NRELEQAVEAGAFRRDLYYRLAVFPIRIPPLRERGEDVILIAEHFLAHFRQELKKPRLSL 342 Query: 388 SAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVA 447 + A L+ + +PGNVREL++ I RA +L + ++ L A + V+L + Sbjct: 343 APDALAALRAHLWPGNVRELQNTIERAAILHDTEVTAADLGLSANLRSAAAVSLGEHSID 402 Query: 448 AVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 + + +A+ ++ I L + N +A A L L GL Sbjct: 403 MGGSLPEVSAQASRTIEKAKIEATLRECKWNKSAAAERLGISYKTLLTKIHGYGL 457 >UniRef50_B5EHD0 Two component, sigma54 specific, transcriptional regulator, Fis family n=7 Tax=Desulfuromonadales RepID=B5EHD0_GEOBB Length = 458 Score = 477 bits (1229), Expect = e-133, Method: Composition-based stats. Identities = 137/378 (36%), Positives = 202/378 (53%), Gaps = 13/378 (3%) Query: 129 TLDGMQPDQFDV----FSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQ 184 ++ +Q F F + LRLI LA + + +L+ + +P Sbjct: 88 AVESLQLGAFHYMKKPFKADALRLIVKLALKTQTLKREVRKLKRNDSPLPGRSP------ 141 Query: 185 TQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNC 244 +IG S ++ ++ +A VLI+GE+GTGKE+VA+AIH+ S R + +NC Sbjct: 142 --IIGKSEAFQEMAAQVREIARIPSTVLITGESGTGKEVVARAIHDLSDRKEQAFIAINC 199 Query: 245 AALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQ 304 A++P + ESELFGH KGAFTGA + G FE A +GT+FLDEIGE+ +A+Q KLLRVLQ Sbjct: 200 ASIPAPLLESELFGHEKGAFTGASGRKKGLFEEAHHGTIFLDEIGEMDMAMQVKLLRVLQ 259 Query: 305 YGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDD 364 I+RVG + + +D RV+AATNR+L + + FR DLF+RL+VFP+++PPLRER D Sbjct: 260 ERTIRRVGAVKDIEIDARVIAATNRNLAKRIEEKSFREDLFYRLNVFPINIPPLRERPAD 319 Query: 365 VILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSG 424 + LA YF + G +S A L+ Y++PGNVREL + I R ++ Sbjct: 320 IAALAVYFLDSFSRSFGRDFRDVSPEAEQLMAQYAWPGNVRELRNVIERICIMRSGPTLL 379 Query: 425 DEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACAR 484 E + + LP ++ L EA A ++ I+QAL + N A Sbjct: 380 PEHLPQEIRSTVAPPPLPAELPISI-AADLGLEEAVSAIEKSLIQQALQKTGWNVLQTAA 438 Query: 485 MLETDVANLHRLAKRLGL 502 L+ L ++ GL Sbjct: 439 NLKIPRGTLRYKMEKYGL 456 >UniRef50_Q2LUG3 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LUG3_SYNAS Length = 535 Score = 476 bits (1227), Expect = e-133, Method: Composition-based stats. Identities = 134/363 (36%), Positives = 204/363 (56%), Gaps = 12/363 (3%) Query: 144 EELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEI 203 E+ RL A LA L +QLE++N+ D + ++IG S + +I Sbjct: 177 EQHRLEAELAKAFDEIKRLKDQLEAENIYLRDEIKLKE-GFGEIIGASDVIKSTIHKIRQ 235 Query: 204 VAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGA 263 VA S VL +GETGTGK + A+ +H S R P V +NCA+LP ++ ESELFG KGA Sbjct: 236 VAPSKTTVLFAGETGTGKGIFARFLHRESDRRDRPFVNVNCASLPANLIESELFGREKGA 295 Query: 264 FTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRV 323 +TG+ + + G+FE+A+NGT+FLDEIGE+ + LQAKLL+V++ G+ +R+G ++VDVR+ Sbjct: 296 YTGSTARQIGRFELANNGTIFLDEIGEVPMELQAKLLKVIEEGEFERIGSPHPIKVDVRI 355 Query: 324 LAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLS 383 +AATNRDL+EE+ GRFR DL+ RL++FP+++PPLR+R D+ LL F + Sbjct: 356 IAATNRDLQEEIKKGRFRQDLYFRLNIFPINIPPLRDRKGDIPLLVKAFVAKFSKSHNRD 415 Query: 384 RVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPT 443 + A L++Y++PGNVREL + + RAV+++ + ++A Sbjct: 416 IKRIPAKIMESLKNYAWPGNVRELINVMERAVIVSEGSELQLAEKIDAIPLD-------- 467 Query: 444 PEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNW---AACARMLETDVANLHRLAKRL 500 + E +RE I +AL Q A++L+ L K+L Sbjct: 468 SSIRGDESFSTGSGETLADAEREHILKALQQTGWRIEGPRGAAQILDLQPNTLRARMKKL 527 Query: 501 GLK 503 G+K Sbjct: 528 GIK 530 >UniRef50_A9FR32 Sigma-54 dependent transcriptional regulator n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FR32_SORC5 Length = 518 Score = 476 bits (1227), Expect = e-133, Method: Composition-based stats. Identities = 202/518 (38%), Positives = 278/518 (53%), Gaps = 32/518 (6%) Query: 7 VLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAID-GLAKDVLG 65 L + + L + QR++ L +V DA ++L + +A GL+ LG Sbjct: 2 TLLDAVLSLSEAPARDEALQRILRALARVTAADALSVLTAAEDGSVGVAAQIGLSPAALG 61 Query: 66 RRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQ--ESLKVHACVGLPLFAGQN 123 F HPRL +A +RF SE PDPY G + G E +HAC+ +PL Sbjct: 62 MSFRPAEHPRLRRATQAAGPIRFLDPSE-PDPYSGWLLGSPGEIHPIHACMAVPLHVQGR 120 Query: 124 LIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVK 183 L G LTLD P DE+ R+ A L AGAL ++ G A+ A Sbjct: 121 LAGLLTLDACDPHGLRGLRDEDARVFAGLCAGALR----LDAGPEARCAIGPASIGPAPG 176 Query: 184 QTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLN 243 S GM ++++EI ++A + VL++GETG GKELVA+A+HE SPRA LV +N Sbjct: 177 S-----RSAGMQRIEREIAVLAPLSVPVLVTGETGVGKELVARALHERSPRASRALVIVN 231 Query: 244 CAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVL 303 CAA+P + ESELFGH +GAFTGA + R+G+FE A GT+FLDEIGEL + QA+LLR L Sbjct: 232 CAAIPAQLVESELFGHRRGAFTGATAARAGRFEAAHGGTIFLDEIGELPFSAQAQLLRAL 291 Query: 304 QYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGD 363 Q G+IQ VG+DR RVD RV+AATNRDLR EV GRFRADLFHRL V+P+ VPPLRER + Sbjct: 292 QEGEIQPVGEDRARRVDARVVAATNRDLRREVAEGRFRADLFHRLWVYPICVPPLRERRE 351 Query: 364 DVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVV---LARA 420 D+ L F + G +RV + A L ++PGNVREL++A+ RAV+ +A Sbjct: 352 DIPALCERFAAEIAAELGATRVDFTEPALGALAQGAWPGNVRELKNAVERAVLRRTIAEG 411 Query: 421 TR-SGDEVILEAQHFAFPEVTLPTPEVAA---VPVVKQNLREATEAFQRETIRQAL---- 472 R +G +++ + + P +A +P + L + E + +AL Sbjct: 412 KRAAGRALVVRREDLDAIDGGAPERSLAPRIELPGERPWLADTALGQPVELLAEALERAR 471 Query: 473 --------AQNHHNWAACARMLETDVANLHRLAKRLGL 502 N A R+L + ++ A RLGL Sbjct: 472 REAFARAFRAAGGNAATAGRLLGLSRSFAYKEAVRLGL 509 >UniRef50_B8FZI3 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8FZI3_DESHD Length = 461 Score = 476 bits (1226), Expect = e-133, Method: Composition-based stats. Identities = 130/375 (34%), Positives = 207/375 (55%), Gaps = 5/375 (1%) Query: 129 TLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQTQMI 188 + M+ +D S ++ AL L +N L A E + +I Sbjct: 91 AVQAMKEGAYDYLSK---PFPIEQLQLTINKALQHIALTEENQLLR-AQLQEGLNTDNII 146 Query: 189 GLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALP 248 G G+ + + I ++ SD ++LI GE+GTGKE++A+AIH+ S R+ P + ++CA+LP Sbjct: 147 GARGGLQDVFETIGKISNSDASILILGESGTGKEVIARAIHKNSRRSTGPFIPVDCASLP 206 Query: 249 ESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDI 308 E++ ESELFG+ +GAFTGA + + G EMA GTLFLDE+GEL+ A+QAKLLR L+ I Sbjct: 207 ENLLESELFGYERGAFTGANTTKQGLLEMAHGGTLFLDELGELTPAMQAKLLRTLEERAI 266 Query: 309 QRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILL 368 +RVG +R + +D+RVLAATNRDL + + A FR DL++R++V L +P L ER D+ LL Sbjct: 267 RRVGGNRLINIDIRVLAATNRDLEKAIRAKEFREDLYYRINVITLKLPVLHERQQDIPLL 326 Query: 369 AGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVI 428 +FC++ + A ++ Y++PGN+REL + + RA+ L+ + + Sbjct: 327 VNHFCKKFSQDMNKKVSGFTPEAMQAMKSYAWPGNIRELRNVVERAISLS-GSEMVEISD 385 Query: 429 LEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLET 488 L + + LP E + + F+ E +++ L ++H N A+ Sbjct: 386 LPEKVIGGQKKILPEQENLGAFSFHEAKDICLKRFEMEYLKELLDKHHGNITQAAKSAGM 445 Query: 489 DVANLHRLAKRLGLK 503 D +HRL + L+ Sbjct: 446 DRKTIHRLINKYDLQ 460 >UniRef50_B9XM81 Sigma54 specific transcriptional regulator with PAS/PAC sensor, Fis family n=1 Tax=bacterium Ellin514 RepID=B9XM81_9BACT Length = 501 Score = 476 bits (1226), Expect = e-133, Method: Composition-based stats. Identities = 156/352 (44%), Positives = 221/352 (62%), Gaps = 8/352 (2%) Query: 155 GALSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLIS 214 GA+S + LE +N D E + +I SP + ++ ++IE+VA + NVLI Sbjct: 150 GAVSCIQTQKSLELENEYLLDEIRSE--RFGAIIASSPALKKVLQQIEVVAPTQANVLIL 207 Query: 215 GETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGK 274 GE+GTGKELVA+AIH+ S R PLV +NCA++P+ + ESE FGHV+GAFTGAI +R G+ Sbjct: 208 GESGTGKELVARAIHDLSERKGKPLVRVNCASIPKELFESEFFGHVRGAFTGAIKDRVGR 267 Query: 275 FEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREE 334 FE+A+ G+LFLDEIGE+ L LQ+KLLRVLQ G +RVG+DR V+VR++AATNRDL E Sbjct: 268 FELANGGSLFLDEIGEIPLDLQSKLLRVLQEGQFERVGEDRTRTVNVRIIAATNRDLLTE 327 Query: 335 VLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNL 394 AGRFR DL++RLSVFP+ +P LRER +D+ LA +F +Q R G++R L+ Sbjct: 328 AKAGRFRLDLYYRLSVFPIEIPALRERPEDIGPLAEHFVKQSANRLGVTRPRLTKADVRE 387 Query: 395 LQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQ 454 L+ Y +PGNVREL++ + RAV+LAR+ R E+ ++ P +P P+ + + Sbjct: 388 LEGYDWPGNVRELQNVVERAVILARSGRLKFELGNNSERPFPPSARVPAPDGSI--DHQP 445 Query: 455 NLREATEAFQRETIRQALAQNHHNW---AACARMLETDVANLHRLAKRLGLK 503 +L E + +++ I AL Q A +L L +R GLK Sbjct: 446 SLGE-LKQQEKQVILNALKQAQGRIYGEEGAAAILSMKPTTLASRIQRYGLK 496 >UniRef50_C1ZGY0 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZGY0_PLALI Length = 675 Score = 476 bits (1226), Expect = e-133, Method: Composition-based stats. Identities = 158/515 (30%), Positives = 240/515 (46%), Gaps = 22/515 (4%) Query: 2 SFSVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYD---------SRQFI 52 S + L +A+E+ Q + ++ L A+L + Q Sbjct: 164 SLELSRLYRLALEMGSATTAQGLSEIVLEGLLNASSATIGAILLMSSSLAKNSGGNDQLS 223 Query: 53 PLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHA 112 +A + + + + + + V S D ++ + Sbjct: 224 VVAYRAQN----HQPYHPVSDSLSQIVLKDQEAVLARDISSDDRFLDR--DSLGEIEAQS 277 Query: 113 CVGLPLFAGQNLIGALTLDGM-QPDQFDVFSDEELRLIAALAAGALSNALLIEQLES--- 168 + P+ + + G + L Q +V E +A A L +E+L++ Sbjct: 278 VICAPVRTAEKVYGLIHLYSTDNVSQLEVDDLEFTLAVADQMAAGLEQLQRVEKLQAGLQ 337 Query: 169 QNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAI 228 + + + + +IG SP M QLK I +A +D LI GE+G+GKEL+A+AI Sbjct: 338 RAEVENQTLREQLRSEMDLIGESPAMQQLKNRIARIAPTDATALIRGESGSGKELIARAI 397 Query: 229 HEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEI 288 H S R P + +NCAAL ES+ ESELFGH KG+FTGA+ + GKFE A GT+FLDE+ Sbjct: 398 HLHSNRRGGPFITMNCAALSESLLESELFGHEKGSFTGAVGRKLGKFEQAHQGTIFLDEV 457 Query: 289 GELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRL 348 GE+S +QAK LRVL+ +RVG + DVRV+AATNRDL + V G FR DL+ RL Sbjct: 458 GEMSPGVQAKFLRVLEGHPFERVGGGDPVHADVRVVAATNRDLEKAVSEGTFRQDLYFRL 517 Query: 349 SVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELE 408 V L V PLR R D+ LLA YF + + + V + GA L Y +PGNVREL+ Sbjct: 518 QVVELVVEPLRRRKLDIPLLANYFLNRFARKMARNMVGFTPGAMQALIEYDWPGNVRELQ 577 Query: 409 HAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETI 468 H I RAV+L G + + + PT +++ + E +++ I Sbjct: 578 HTIERAVILCPHEAVGQADLHLSALGTTGKSVEPTRDISTRQTFEA---LPLEIVEQQHI 634 Query: 469 RQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 L N + A++L + + L R KR ++ Sbjct: 635 LATLEWTGWNKSQAAQILGIERSTLDRKLKRYDVE 669 >UniRef50_Q1N5U9 Sigma-54 dependent transcriptional regulator/sensory box protein n=1 Tax=Bermanella marisrubri RepID=Q1N5U9_9GAMM Length = 479 Score = 476 bits (1226), Expect = e-133, Method: Composition-based stats. Identities = 143/391 (36%), Positives = 217/391 (55%), Gaps = 26/391 (6%) Query: 115 GLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPG 174 P+ ++ GA+ + E R+ +AL N L E+LE++N Sbjct: 110 ATPILQEGSIQGAIVVFKNIS--------ERKRIESALQKALTENRFLKEKLEAENSYLQ 161 Query: 175 DATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPR 234 + E+ Q+ +IG SP + L+ +I + A + N+LI GE+GTGKELVA+AIH+ S R Sbjct: 162 --SEIESNYQSDIIGQSPAIEHLQTQISLSAPTSANILIQGESGTGKELVARAIHQQSER 219 Query: 235 AVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLA 294 LV LNC A+PE + +SELFGH KGAFTGA+ R G+FE+A+ GTLFLDE+ EL L Sbjct: 220 QAQTLVKLNCGAIPEGLVDSELFGHEKGAFTGAVKQRIGRFELANKGTLFLDEVSELPLD 279 Query: 295 LQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLS 354 Q KLLRVLQ G+ +RVG ++ +RVDVR++AA+N++L + V G FR DL++RL+VF + Sbjct: 280 AQVKLLRVLQEGEFERVGGNKTIRVDVRIIAASNKNLEQAVHDGSFRLDLYYRLNVFSVQ 339 Query: 355 VPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRA 414 VPPLRER D+ +L+ +F ++ G S L + + HY +PGN+REL + I Sbjct: 340 VPPLRERKSDLPILSHFFAKKACADMGKSFKGLHMPSLKWMSHYQWPGNIRELSNWIEHN 399 Query: 415 VVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQ 474 +L + A+H E + + +++ I++AL Sbjct: 400 AILHTGGLFHIHPMAHARHDHSVEHDNESIV-------------SLAEAEKQHIQKALLH 446 Query: 475 NHHNWA---ACARMLETDVANLHRLAKRLGL 502 + A A++L+ + L K+LG+ Sbjct: 447 CNGRIAGANGAAQLLQLPASTLRSKMKKLGI 477 >UniRef50_Q3J8M6 Sigma-54 specific, transcriptional regulator, Fis family n=6 Tax=Gammaproteobacteria RepID=Q3J8M6_NITOC Length = 479 Score = 476 bits (1226), Expect = e-133, Method: Composition-based stats. Identities = 137/360 (38%), Positives = 197/360 (54%), Gaps = 17/360 (4%) Query: 156 ALSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISG 215 AL NA L + Q + ++G S ++ IE VA S+ VLI G Sbjct: 117 ALQNAELFREGHQQKGQDRRSVEL----FRSLVGNSRATRTVRHLIEQVADSNATVLILG 172 Query: 216 ETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKF 275 E+GTGKE+VA+ +H S R NP V +NC A+P + ESELFGH KGAFTGAI+ R G+F Sbjct: 173 ESGTGKEVVARNLHYHSSRRGNPFVPVNCGAIPGELLESELFGHEKGAFTGAITARQGRF 232 Query: 276 EMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEV 335 E+A GTLFLDEIG++ +A+Q KLLRVLQ +RVG ++ + VDVR++AAT+R+L E++ Sbjct: 233 ELAQKGTLFLDEIGDMPMAMQVKLLRVLQERTFERVGSNKLIHVDVRIIAATHRNLEEQL 292 Query: 336 LAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLL 395 G FR DL++RL+VFP+ +PPLRER +D+ LL + +G S L+ A L Sbjct: 293 QEGNFREDLYYRLNVFPIEMPPLRERVEDIPLLINEIITRIEHEKGASV-RLTPAAVMAL 351 Query: 396 QHYSFPGNVRELEHAIHRAVVLA------------RATRSGDEVILEAQHFAFPEVTLPT 443 Y +PGNVREL + + R +L + G+ + A A E + T Sbjct: 352 CQYPWPGNVRELANLVERLTILHPYGVVDHYDLPEKYRIEGEGISPSAPELASLERVVDT 411 Query: 444 PEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 E +P +L++ +R I+QAL + A A L L ++ ++ Sbjct: 412 LETPRLPREGLDLKKHLSCIERSLIKQALEEADGVVAQAAHRLRMRRTTLVEKLRKYDIQ 471 >UniRef50_A5D2K0 Transcriptional regulator n=2 Tax=Clostridia RepID=A5D2K0_PELTS Length = 568 Score = 476 bits (1226), Expect = e-133, Method: Composition-based stats. Identities = 152/480 (31%), Positives = 240/480 (50%), Gaps = 45/480 (9%) Query: 25 FQRLITTLRQVLE-CDASALLRYDSRQFIPLAIDGLAKDVLGRR-FALEGHPRLEAIARA 82 ++ ++++ +E D + +++Y + F + K+ +G+ F L + + Sbjct: 121 LSAILNSMQEAIEVADINGVIKYVNPAFSRITGIP-EKERIGQNIFEASPDGALATVLKT 179 Query: 83 GDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFS 142 G VV G + V + P+ + GA+ + D ++ Sbjct: 180 GKVV----------FGQRTKVGGSNADVVSNSA-PIVVDGKMEGAVCVFQHFTDIMNL-- 226 Query: 143 DEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIE 202 EEL+ + +IG SP + + E Sbjct: 227 MEELKKSTTIIENLTDKL--------------GQVTTSKYSFDDIIGDSPELRKCITLAE 272 Query: 203 IVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKG 262 A S+ VLI GE+GTGKEL+A AIH AS R NP + +NCAA+P+++ ESE FG+ KG Sbjct: 273 KSAQSNSTVLILGESGTGKELLAHAIHAASMRRENPFIKVNCAAIPDTLLESEFFGYAKG 332 Query: 263 AFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVR 322 AFTGA+ ++ GKFE+A GT+FLDEIG+++L LQAKLLRVLQ + +RVG ++ ++VDVR Sbjct: 333 AFTGAVKSKIGKFELAHGGTIFLDEIGDMNLLLQAKLLRVLQEMEFERVGGNQTIKVDVR 392 Query: 323 VLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGL 382 V+AATNR+LRE + GRFR DL++RL+V +++PPLR R +D+ L + + G Sbjct: 393 VIAATNRNLRELIRQGRFREDLYYRLNVVEITMPPLRARKEDLPALVSHLITSLNRKLGK 452 Query: 383 SRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLP 442 + +S A +L Y +PGNVRELE+ I R +V A DE IL ++F Sbjct: 453 NVKGISKDAEEVLFSYDWPGNVRELENVIERVMVTA------DEEILTKKNFIQHVNQFR 506 Query: 443 TPEVAAVPVVKQNLREATEAFQRETIRQALAQNHH---NWAACARMLETDVANLHRLAKR 499 V ++ E + IR+A+++ + A+ L +A L+ K+ Sbjct: 507 MSSERDVDLMP------IEQMEEMLIRKAISKFGNTVEGKRRAAQALNISLATLYNKLKK 560 >UniRef50_B9M2U3 Two component, sigma54 specific, transcriptional regulator, Fis family n=13 Tax=Proteobacteria RepID=B9M2U3_GEOSF Length = 474 Score = 476 bits (1225), Expect = e-132, Method: Composition-based stats. Identities = 142/379 (37%), Positives = 207/379 (54%), Gaps = 20/379 (5%) Query: 128 LTLDGMQPDQFDV----FSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVK 183 + L +Q + ELR+I A L +E N + Sbjct: 91 IGLRAVQAGAYGFCRKPIHMSELRVIINRAFNLLD-------MEEDNARQQSVLEQKGCG 143 Query: 184 QTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLN 243 +IG SP M Q+ I V+ SD+ V I+GE+GTGKELVAKA+H S R P V +N Sbjct: 144 FGGIIGKSPQMLQVFSMIRKVSLSDVAVFITGESGTGKELVAKALHNMSLRKNGPFVPIN 203 Query: 244 CAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVL 303 C A+PE++ ESE+FG +GAFTGA + GK E A GT+FLDEIGEL LQ KLLR L Sbjct: 204 CGAIPENLLESEMFGTERGAFTGAHARILGKAEYAHKGTMFLDEIGELPGNLQVKLLRFL 263 Query: 304 QYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGD 363 Q +QRVG + VD R+++ATN D+ + + G FR DL++R++V +++PPLRERGD Sbjct: 264 QEKVLQRVGGREDIAVDARIISATNMDIAKAIGEGLFREDLYYRIAVITINLPPLRERGD 323 Query: 364 DVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRS 423 D++LLA F ++ S + +L++Y++PGNVRELE+ + RAV+++ Sbjct: 324 DIMLLANLFLKRATEEFCKKTRGFSTSSLKILKNYTWPGNVRELENRVQRAVIMS----- 378 Query: 424 GDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACA 483 D ++E E ++P + P+ L++A + +RE I AL + N A A Sbjct: 379 -DSPLIEPADLGLTENSMP---LMMPPMGCVTLKDARDRLEREMIISALGRQEGNIAKAA 434 Query: 484 RMLETDVANLHRLAKRLGL 502 +L L+ L K+ L Sbjct: 435 EVLGVSRPTLYDLMKKYSL 453 >UniRef50_C6MX44 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Geobacter sp. M18 RepID=C6MX44_9DELT Length = 460 Score = 476 bits (1225), Expect = e-132, Method: Composition-based stats. Identities = 138/417 (33%), Positives = 211/417 (50%), Gaps = 21/417 (5%) Query: 90 ADSELPDPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDV----FSDEE 145 D LP DGL + K G+ + G + ++ M+ FD F Sbjct: 51 TDMRLP-GADGLEVLKAVRKAQPDTGVVVITGYADVQT-AVEAMKLGAFDYIAKPFEPAH 108 Query: 146 LRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVA 205 L + ++ ++L + E + +++ SP M + I++ A Sbjct: 109 LLSLVERFLCQTAHVEDSQRLREE--------VAEHQRFEEIVSNSPSMLSVFNLIQMAA 160 Query: 206 ASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFT 265 +D +V+I GE+GTGKELVA A+H SPR P + +NCAA+PE++ E+E+ G+ KGAFT Sbjct: 161 KTDSSVIIYGESGTGKELVANAVHNRSPRLDKPFIKVNCAAIPENLLEAEMCGYEKGAFT 220 Query: 266 GAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLA 325 GA+ + GK E AD GT F DEIG++S LQAKLLRVL+ +RVG + VD+R + Sbjct: 221 GALQRKKGKLETADGGTFFFDEIGDMSFPLQAKLLRVLETRSFERVGGTEPVHVDIRFIF 280 Query: 326 ATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRV 385 AT R L +E+ G+FR DL++R++V P+++PPLRER DD+ LL +F +QG + Sbjct: 281 ATMRRLPDEIRKGKFREDLYYRINVLPITLPPLRERADDIPLLLHFFVAHFCRKQGRQVL 340 Query: 386 VLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPE 445 ++ A LL+ Y +PGNVREL+HA+ AV + E+ +P Sbjct: 341 DIAPEAMELLRSYPYPGNVRELKHAVEMAVTFCSDRVITPSCLP-------GEIREGSPA 393 Query: 446 VAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 + L + + +R+TI L + A A+ L L R K + Sbjct: 394 LQGWRGDAGALESSRKETERQTIINVLKKTGGRKMAAAKALGISRETLWRKLKEYNV 450 >UniRef50_B9M6T3 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Geobacter RepID=B9M6T3_GEOSF Length = 488 Score = 476 bits (1225), Expect = e-132, Method: Composition-based stats. Identities = 129/319 (40%), Positives = 190/319 (59%), Gaps = 13/319 (4%) Query: 185 TQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNC 244 Q +G M + I VA +DL VLI GE+GTGKEL A+AIHE SPR P V +NC Sbjct: 183 DQFVGTGKAMLDVFANIRKVAPTDLTVLILGESGTGKELTAQAIHERSPRKDKPFVAINC 242 Query: 245 AALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQ 304 AA+P+++ E+ELFGH KGAFTGA + + GKFE ADNGT+FLDEIG++ LQAKLLR LQ Sbjct: 243 AAIPDNLLEAELFGHEKGAFTGAHTTKKGKFEYADNGTIFLDEIGDMPSNLQAKLLRFLQ 302 Query: 305 YGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDD 364 ++RVG +V+VRV+AATNRDL + G+FR+DL++RL F +++PP+RERG+D Sbjct: 303 DKIVERVGTVGGKKVNVRVIAATNRDLSVAIAEGKFRSDLYYRLDEFAINLPPVRERGED 362 Query: 365 VILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSG 424 ++LA YF + GL+ + A +++ +Y +PGNVRE+ + + R++V+A Sbjct: 363 TLILAKYFLNKFSREGGLA-KTFTKEAIDVINNYDWPGNVREIINKVRRSIVMATGRYVT 421 Query: 425 DEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACAR 484 P + +L A ++E I++ ++N + A+ Sbjct: 422 ------------PADLMLDVAKVEDGAGNSDLSSAVAVLEKEKIKEVFKSCNYNISTAAK 469 Query: 485 MLETDVANLHRLAKRLGLK 503 +L L+R K G++ Sbjct: 470 LLGVSRPTLYRRMKIYGIE 488 >UniRef50_B8FD65 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FD65_DESAA Length = 447 Score = 476 bits (1225), Expect = e-132, Method: Composition-based stats. Identities = 122/319 (38%), Positives = 186/319 (58%), Gaps = 7/319 (2%) Query: 184 QTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLN 243 +++ S M Q+ +I+ VA +D VLI+GE+GTGKELVA +IH S R V +N Sbjct: 125 FPEIVAQSKAMRQVLSQIKRVAPTDSTVLITGESGTGKELVADSIHRHSQRNGRRFVKIN 184 Query: 244 CAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVL 303 CAA+P+++ ESELFG+ KGAFTGA + + GKFE A+ GT+FLDEIG++ L QAK+LRVL Sbjct: 185 CAAIPDTLLESELFGYEKGAFTGAAARKPGKFEQANGGTVFLDEIGDMPLETQAKILRVL 244 Query: 304 QYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGD 363 + ++ R+G R + VDVRV+AATNR++++ V G FR DLF RL+VFP+ +PPLRER + Sbjct: 245 EEKEVDRLGGVRPIPVDVRVVAATNRNIQKMVADGAFREDLFFRLNVFPIQLPPLRERPE 304 Query: 364 DVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRS 423 D+ L F + +S A ++L + +PGNVREL +A+ +++ Sbjct: 305 DIPFLIEEFMKFSSKE-----STISPPAMHILCAHQWPGNVRELRNAVESSLLF--GKEV 357 Query: 424 GDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACA 483 + L V P + + +L + ++ + +AL ++ A A Sbjct: 358 VEPEHLPPALAGSMAVPTPAGVLISGEDESLDLDFRLQELEKGILVEALKRSDGVQAQAA 417 Query: 484 RMLETDVANLHRLAKRLGL 502 R+L +L K+ G+ Sbjct: 418 RLLGIKERSLWHRVKKYGI 436 >UniRef50_C7PLV9 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PLV9_CHIPD Length = 515 Score = 476 bits (1225), Expect = e-132, Method: Composition-based stats. Identities = 150/417 (35%), Positives = 217/417 (52%), Gaps = 23/417 (5%) Query: 95 PDPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAA 154 PD L + V + LPL N G L L + F ++ A L + Sbjct: 106 PDRRSALQTTLFNSGVREMLILPLRNHTNSFGFLCLLAKHHNTFPKSLQISVKRYAGLLS 165 Query: 155 GALSNALLIEQLESQNMLP------GDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASD 208 A +L++ L + + + +++ + + +++ VA +D Sbjct: 166 AATLKLMLLDALPQWLQEEDMGGDGAELLLYNDLLPAKLV-SGIALRPVIQQVRQVAPTD 224 Query: 209 LNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAI 268 VL++GETGTGKEL A+AIH +S R V +NCAALP + ESELFGH KGAFTGAI Sbjct: 225 ATVLLTGETGTGKELFAEAIHLSSMRRQKAFVKINCAALPPQLIESELFGHEKGAFTGAI 284 Query: 269 SNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATN 328 R GKFEMA+ GTLFLDEIGEL L +QAKLLRV+Q +I+R+G + V+VR++AATN Sbjct: 285 HRRIGKFEMAEGGTLFLDEIGELPLDMQAKLLRVIQEKEIERIGGTETIPVNVRIIAATN 344 Query: 329 RDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLS 388 R L EEV GRFR DL++RL VFP+ +P LRER +D+ LL +F ++ G ++ Sbjct: 345 RTLEEEVRQGRFRQDLYYRLYVFPIHLPALRERREDIPLLLQHFARNAAMKYGKPIRHIA 404 Query: 389 AGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAA 448 +G+ L Y++PGN+RE+EH + RAV+ + + A P Sbjct: 405 SGSVLALMDYTWPGNIREMEHMVERAVISSDEPQIT---------IAVPGNRKALEADGN 455 Query: 449 VPVVKQNLREATEAFQRETIRQALAQNHHNW---AACARMLETDVANLHRLAKRLGL 502 L E +R+TI +AL ++ A +L+ L K+LG+ Sbjct: 456 SLSPLLTLAET----ERQTIIRALRYSNGRIRGPQGAADLLDIKPTTLEARMKKLGI 508 >UniRef50_Q3A5A0 Two component, sigma54 specific, transcriptional regulator, Fis family n=6 Tax=Deltaproteobacteria RepID=Q3A5A0_PELCD Length = 470 Score = 475 bits (1224), Expect = e-132, Method: Composition-based stats. Identities = 142/408 (34%), Positives = 208/408 (50%), Gaps = 21/408 (5%) Query: 103 PGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQF----DVFSDEELRLIAALAAGALS 158 Q + ++ VG+P+ + L+ ++ F ++ EE A S Sbjct: 72 ASQHNSQIVTIVGVPVDHRG-----MALESLRRGAFFCLNTPYNHEE-------TIIATS 119 Query: 159 NALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEI-VAASDLNVLISGET 217 AL L ++ + ++ +IG +P M QL IE A D +VL+ GE+ Sbjct: 120 RALQHHDLLTKGEIKARKFR-KSDGFHGIIGQAPKMRQLFNNIEKLAAEGDSSVLVLGES 178 Query: 218 GTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEM 277 GTGKELVA+AIH PR+ V +NCAA+PE + ESELFG+VKGAFTGA + G+ + Sbjct: 179 GTGKELVARAIHAHGPRSRKNFVPVNCAAIPEDLLESELFGYVKGAFTGATQAKMGRLQY 238 Query: 278 ADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLA 337 A+ GTLFLDEIG++ +LQAKLLRVLQ + + VG + + VDVR++AAT+RDL + V Sbjct: 239 AEGGTLFLDEIGDMKASLQAKLLRVLQEKEFEPVGGVKPVSVDVRIVAATHRDLEKSVAE 298 Query: 338 GRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQH 397 GRFR DL++RL+V PL +PPLR+R +D+ LL F ++ S A L+ Sbjct: 299 GRFREDLYYRLNVIPLQIPPLRKRKEDISLLIERFVGIYNRKKKNPFKGFSDDALQALKQ 358 Query: 398 YSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPE---VAAVPVVKQ 454 Y +PGNVRELE+ + R + + + E P E ++ Sbjct: 359 YPWPGNVRELENLVQRMSIFFAGQSVSRKDLPEKYQGCDEAQQQPVQEQENSISLEDGGV 418 Query: 455 NLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 + F+ + I QAL N A++L L KR + Sbjct: 419 DFNLLVNRFENQLILQALNVTGGNKREAAKLLNLKRTTLIEKLKRKNI 466 >UniRef50_C0Z5U4 Probable transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z5U4_BREBN Length = 548 Score = 475 bits (1224), Expect = e-132, Method: Composition-based stats. Identities = 134/405 (33%), Positives = 194/405 (47%), Gaps = 32/405 (7%) Query: 115 GLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQ-NMLP 173 P+ +IGA++++ +++ + L + L+ + + Sbjct: 155 AAPIRREGEIIGAISIE------------QDITELVRLNEELAHTTAHLHNLQQEMSRFQ 202 Query: 174 GDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASP 233 PF A+K G S + + VA +D VLI GE+G GKEL A+AIH+AS Sbjct: 203 AADDPFYAIK-----GHSASIQSAIGSAKKVAQTDATVLIYGESGVGKELFAQAIHQASR 257 Query: 234 RAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISN-RSGKFEMADNGTLFLDEIGELS 292 R P + +NC A+P ++ ESELFG+ GAFTGA + GK E+A GTLFLDEIGEL Sbjct: 258 RHEKPFIAINCGAIPAALFESELFGYQGGAFTGAEKKGKPGKLELAHGGTLFLDEIGELP 317 Query: 293 LALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFP 352 L LQ KLLR LQ RVG + V+ R++AATNR L + V GRFR DL++RL+VF Sbjct: 318 LELQVKLLRALQERQFYRVGGTEPITVNTRIVAATNRQLEQMVADGRFREDLYYRLNVFS 377 Query: 353 LSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIH 412 L +PPLRER +D+ L F + + S +S L Y++PGN+R+L + I Sbjct: 378 LEIPPLRERREDLPELVQIFIHEYSVAHDQSVPRISPEVMQALFEYTWPGNIRQLRNVIE 437 Query: 413 RAVVLARATRSGDEVILEA--QHFAFPEVTLPTPEVAAVPVVKQNLREATE--------- 461 R +L E + H V+L TP Sbjct: 438 RLSILQENGVILPEHLPSVIRSHTEPTHVSLHTPMGGTYAPPTTTPPPIIRPSIAIAYPS 497 Query: 462 --AFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLKD 504 A ++E I AL + + N A A +L L+ K+ + + Sbjct: 498 SPANEKERILAALERTYGNKKAAAELLGVSRGTLYNKMKKFNINE 542 >UniRef50_B1Y713 Transcriptional regulator, NifA, Fis Family n=4 Tax=Burkholderiales RepID=B1Y713_LEPCP Length = 593 Score = 475 bits (1224), Expect = e-132, Method: Composition-based stats. Identities = 142/431 (32%), Positives = 222/431 (51%), Gaps = 15/431 (3%) Query: 7 VLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQ-----FIPLAIDGLAK 61 + I L + F+ + L L ++ + + GL + Sbjct: 17 TIYEICRILGASLDIGRTFRASLNVLAAHLGLSRVMIVMAPDDRDGEARLRVHSSVGLDQ 76 Query: 62 DVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIP-GQESLKVHACVGLPLFA 120 + R G + + +G V P ++ + D G ++ ++ A V +PL Sbjct: 77 EQERRGQWHYGEGVIGHVYASGMPVVVPDVAQAAEFIDRTGAFGAQADRMMAFVVVPLKT 136 Query: 121 GQNLIGALTLDGMQPDQFDVFSDEELRLIAALAA-------GALSNALLIEQLESQNMLP 173 + ++G L + D+ + +AA GA++ QLE+ + Sbjct: 137 DRAVVGVLAAQREVSGGVRLSDDQRILTMAATLMAQAASLHGAVTEEHKRLQLETTRLQK 196 Query: 174 GDA-TPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEAS 232 A P ++G+S GM Q+ E+ A + VL+ GE+GTGKE +A+A+H S Sbjct: 197 ALAPEPRGRYTLDNVVGVSRGMQQVFSEVHQAAPARATVLLRGESGTGKEAIARALHYLS 256 Query: 233 PRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELS 292 PR P + +NCAAL ES+ ESELFGH +GAFTGA +R G+FE A GTLFLDE+G++S Sbjct: 257 PRKDAPFIKVNCAALTESLLESELFGHERGAFTGAAGDRKGRFEQAHTGTLFLDEVGDIS 316 Query: 293 LALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFP 352 + QAKLLRVLQ + +RVG +R ++VDVR++ ATNRDL + V G +RADL++R++V Sbjct: 317 ASFQAKLLRVLQEREFERVGGNRAIKVDVRLICATNRDLEKMVKRGEYRADLYYRINVVS 376 Query: 353 LSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIH 412 + +PPLRER DD+ L +F ++ ++ ++ A +L H +PGNVRELE+ I Sbjct: 377 IFLPPLRERRDDIPALVSHFVDRFNKE-NRRKLRIAGDAMEVLSHCYWPGNVRELENCIE 435 Query: 413 RAVVLARATRS 423 R +A Sbjct: 436 RTATMANGDLI 446 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 9/40 (22%), Positives = 17/40 (42%) Query: 464 QRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 +RE + A+ Q A AR+L L ++ ++ Sbjct: 550 ERERLIWAMEQCAWVQAKAARLLHVTPRQLGYALRKYNIE 589 >UniRef50_A6G018 Two component, sigma54 specific, transcriptional regulator, Fis family protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G018_9DELT Length = 628 Score = 475 bits (1223), Expect = e-132, Method: Composition-based stats. Identities = 161/500 (32%), Positives = 231/500 (46%), Gaps = 17/500 (3%) Query: 2 SFSVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLAK 61 S + LA + L R Q ++ + L + LL D + A G Sbjct: 139 SSRLAALAALGDRLARCGSLQAVYRTASQWAVEALPASRALLLSPDGSDILGAATSGPVV 198 Query: 62 DVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLP---L 118 D+ R L + V PD D + + + P L Sbjct: 199 DLAISRTLL------RRVLSENRAVMVRDVLSEPDLADR--RSVQIRGIQGAMAAPAKNL 250 Query: 119 FAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATP 178 + D+ + AA L + E ++ L + Sbjct: 251 VFYAEWSTKEAVASAVHGAAPRTWDDNALTLLVCAAQLLD--AMGESATERSQLRAALSQ 308 Query: 179 FEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNP 238 +++ +++G SP M +L +E VAA++ VL++GE+GTGKEL A+ IH SPRA P Sbjct: 309 RGSIEPGRVVGSSPQMKKLHVFLERVAATNATVLVNGESGTGKELAARMIHARSPRAERP 368 Query: 239 LVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAK 298 V +NCAA+PE++ ESE FGH KGAFTGA++ G FE A GTLFLDEI E++ A QA+ Sbjct: 369 FVAINCAAVPENLLESEFFGHEKGAFTGAVARHQGVFERAHTGTLFLDEIAEMAPATQAR 428 Query: 299 LLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPL 358 +LRVL+ RVG ++VDVR++AAT+RDLR+ V G+FR DL +RLSV +PPL Sbjct: 429 MLRVLENRSFTRVGGTEEVKVDVRLVAATHRDLRKLVADGQFREDLLYRLSVIHTKLPPL 488 Query: 359 RERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLA 418 RER D+ L +FC G ++ A +L +Y +PGNVREL + + RA+VL Sbjct: 489 RERRGDIPELVRHFCSVLGDDMGRHVETVADDALAVLVNYRWPGNVRELRNVVERALVLG 548 Query: 419 RATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHN 478 + + A P P A PVV +++ I AL N Sbjct: 549 DGPVLELDDLPPELQHAGPHPDQP----GASPVVSPQKVLPLAELEQQAIAAALEATGGN 604 Query: 479 WAACARMLETDVANLHRLAK 498 A A +L D L+R K Sbjct: 605 KARAAALLGIDRTTLYRKLK 624 >UniRef50_Q39TT6 Transcriptional regulator, Fis family / DNA-binding protein Fis n=1 Tax=Geobacter metallireducens GS-15 RepID=Q39TT6_GEOMG Length = 473 Score = 475 bits (1223), Expect = e-132, Method: Composition-based stats. Identities = 134/374 (35%), Positives = 206/374 (55%), Gaps = 21/374 (5%) Query: 132 GMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLS 191 F + + AL L +LE++N+ + +++ + Sbjct: 111 REYSCSFIKDMTQHFQTQEALRRALDEVQTLKNRLEAENVYLMNEIKLSN-NFDEIVTGN 169 Query: 192 PGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESV 251 P + + +E VA +D +VLI GETG GKEL+A+AIH S R PL+ LNCAALP ++ Sbjct: 170 PIFMKALQLVEQVAPTDASVLILGETGVGKELIARAIHNLSNRRDRPLIRLNCAALPATL 229 Query: 252 AESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRV 311 E+ELFGH +GAFTGA + G+F++AD GTLFLDE+G+L + LQ+KLLRVLQ G+ +R+ Sbjct: 230 MENELFGHERGAFTGANCRKPGRFDLADGGTLFLDEVGDLPMELQSKLLRVLQEGEFERL 289 Query: 312 GDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGY 371 G ++VDVR+LAAT+ DL+ + GRFR+DL++RL+VFP+ PPLRER +D+ LL + Sbjct: 290 GGAETIKVDVRILAATHVDLKALLAEGRFRSDLYYRLNVFPIQCPPLRERREDIPLLVRH 349 Query: 372 FCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEA 431 F + + G S ++ L+ Y +PGN+REL++ I RAV+++R + + Sbjct: 350 FVKASCEKNGKSIELIPRHVMESLEGYPWPGNIRELQNVIERAVIISRGNKLEID----- 404 Query: 432 QHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNW---AACARMLET 488 + P++ + P E +RE I +AL A +L Sbjct: 405 ---SLPKMVIAADAAPISP---------LEVTEREHIIRALETTAWRVGGPKGAAEILGL 452 Query: 489 DVANLHRLAKRLGL 502 L ++LG+ Sbjct: 453 KRTTLQARMRKLGI 466 >UniRef50_A9VII1 PAS modulated sigma54 specific transcriptional regulator, Fis family n=16 Tax=Bacillales RepID=A9VII1_BACWK Length = 553 Score = 475 bits (1223), Expect = e-132, Method: Composition-based stats. Identities = 139/389 (35%), Positives = 209/389 (53%), Gaps = 20/389 (5%) Query: 117 PLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQ-NMLPGD 175 P++ +IGA+ S+ ++ AL + + + +LE + Sbjct: 183 PVYCNDEIIGAV------------VSETDVTNQVALNEKLFNMSHEMHRLEQEVAKYKDT 230 Query: 176 ATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRA 235 + PF A+ G SP + + + V + VLI GE+G GKE+ AKAIHEAS A Sbjct: 231 SDPFLAMN-----GKSPVIQRTIQLARKVCSVKSTVLILGESGVGKEVFAKAIHEASETA 285 Query: 236 VNPLVYLNCAALPESVAESELFGHVKGAFTGA-ISNRSGKFEMADNGTLFLDEIGELSLA 294 P + +NC A+PE++ ESELFG+ +GAF+GA + GK E+A GTLFLDEIGE+ L Sbjct: 286 NAPFISINCGAIPEALFESELFGYERGAFSGANSKGKKGKIELAQGGTLFLDEIGEMPLD 345 Query: 295 LQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLS 354 +Q KLLRVLQ RVG ++ + +D R++AATNRDL+EE+ G FR DL++RL+V L Sbjct: 346 MQVKLLRVLQERKYYRVGGEKEINIDFRIIAATNRDLQEEMRKGTFREDLYYRLNVVSLH 405 Query: 355 VPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRA 414 +PPLRER +D+I L F + L + + L HY++PGN+REL + + R Sbjct: 406 IPPLRERREDIIELTYTFLNDFSINYNRPIRDLPSSIMHELLHYNWPGNIRELRNVVERL 465 Query: 415 VVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQ 474 VV A E + + T + ++ + +L+E + +++ I +AL Sbjct: 466 VVFATDGIIKQEYLPFHTNDTLENETSHSLLLSNNNTI-LSLQEEMDEHEKKIIERALRI 524 Query: 475 NHHNWAACARMLETDVANLHRLAKRLGLK 503 N CA+ L A L+ KRLGL+ Sbjct: 525 LDGNKLECAKQLGVTRATLYNRLKRLGLQ 553 >UniRef50_C7LR14 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LR14_DESBD Length = 476 Score = 475 bits (1223), Expect = e-132, Method: Composition-based stats. Identities = 144/350 (41%), Positives = 200/350 (57%), Gaps = 14/350 (4%) Query: 155 GALSNALLIEQLESQNMLPGDATPF--EAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVL 212 GA+ + +L+ + + E M+G S M ++ IE A SD V Sbjct: 131 GAVETMTDLSELDRKENELQQLSRMLDEETMFHGMVGHSAQMRRVFHLIEKAAQSDAPVF 190 Query: 213 ISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRS 272 I GE+GTGKELVA+AIH+ PR+ P V NCAAL E++ ESELFGHVKGAFTGA +R Sbjct: 191 IYGESGTGKELVARAIHDLGPRSDQPYVQFNCAALNEALLESELFGHVKGAFTGAFRHRQ 250 Query: 273 GKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLR 332 G+FE A G +FLDEIG+L + +Q KLLRVL+ +RVGD+R L VDVR++ ATN+ L Sbjct: 251 GRFEAAHGGDIFLDEIGDLPMPVQVKLLRVLETKTFERVGDNRQLSVDVRIITATNKVLP 310 Query: 333 EEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGAR 392 E + G+FR DLF+R++V P+ +P LRER +D+ LLA YF ++ R++ LS Sbjct: 311 ELISQGQFREDLFYRINVIPVHLPSLRERKEDIPLLADYFIQRLRMKSDKDIKGLSPQTL 370 Query: 393 NLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVV 452 L YS+PGNVREL+ ++ A VLA D +E +H V V A PV Sbjct: 371 RLFMDYSWPGNVRELKSSLEYAFVLA------DHGHIEPEHLPHNVV------VTAPPVA 418 Query: 453 KQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 + QR+ + QAL Q N + AR+L + + ++ G+ Sbjct: 419 EPRYGNPGHDSQRQQLVQALHQAGGNKSEAARILGINRVTVLNRMRKHGI 468 >UniRef50_B2V8F5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Sulfurihydrogenibium RepID=B2V8F5_SULSY Length = 440 Score = 474 bits (1222), Expect = e-132, Method: Composition-based stats. Identities = 130/322 (40%), Positives = 185/322 (57%), Gaps = 8/322 (2%) Query: 181 AVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLV 240 + +IG S M L KEI++V+ S+ ++LI GE+GTGKELVAKAIH S RA P + Sbjct: 126 EEEFEGIIGKSQKMKDLFKEIDVVSKSESSILIEGESGTGKELVAKAIHRRSKRANQPFI 185 Query: 241 YLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLL 300 +NC+A+P + E+ELFGH KG+FTGA + GK E+A GTLFLDEIGE+ L +QAKLL Sbjct: 186 PINCSAIPNELFENELFGHEKGSFTGASNREIGKIELAGEGTLFLDEIGEMPLFMQAKLL 245 Query: 301 RVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRE 360 RVLQ + RVG +++ RV++ATNR+L E V FR DLF+R++V L +PPLRE Sbjct: 246 RVLQEREFFRVGGKELIKMRCRVISATNRNLEEMVENKEFREDLFYRINVIHLKIPPLRE 305 Query: 361 RGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARA 420 R +D+ LL F ++ + + A +L +Y +PGNVR+LE+ I RAVVL + Sbjct: 306 RKEDIPLLVKKFIDKFSKINNKNVYDIDNDALEILMNYDWPGNVRQLENIIERAVVLCQG 365 Query: 421 TRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWA 480 I+ A H P+ + + + +N ++ I + L + + N Sbjct: 366 E------IITANHL--PDRIKSNSQKISENIRSENNSLNLYDIEKNIILKVLQEENFNQT 417 Query: 481 ACARMLETDVANLHRLAKRLGL 502 A+ L L K GL Sbjct: 418 RAAQKLGISRKQLRTKMKNFGL 439 >UniRef50_A8UFP5 Sigma54 specific transcriptional regulator with PAS sensor, Fis family protein n=1 Tax=Flavobacteriales bacterium ALC-1 RepID=A8UFP5_9FLAO Length = 616 Score = 474 bits (1222), Expect = e-132, Method: Composition-based stats. Identities = 140/387 (36%), Positives = 210/387 (54%), Gaps = 14/387 (3%) Query: 123 NLIG---ALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPF 179 +IG +T++ + ++ LI L I L +Q D Sbjct: 235 KVIGSNDTVTINEGTISAYGNKAERFYTLILRNIEDRLEAEDQISFLTNQTQYLEDEIK- 293 Query: 180 EAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPL 239 E ++ P M + ++ VA +D VLI+GETGTGKELV++AIHEAS R+ PL Sbjct: 294 ELTSGYDIVAEDPKMQNVLSLVKHVAPTDATVLINGETGTGKELVSRAIHEASNRSDKPL 353 Query: 240 VYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKL 299 + +NC A+P ++ ESELFGH KGAFTGA S+R G+F +AD GT+FLDEIGE+ + LQ KL Sbjct: 354 IRINCGAIPTNLIESELFGHKKGAFTGATSDRKGRFLLADKGTIFLDEIGEMPIELQPKL 413 Query: 300 LRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLR 359 LRV+Q G+ VG ++V+VR++AAT+RDL + G+FR DL++RL+VFP+ VP LR Sbjct: 414 LRVIQEGEFDPVGSSETIKVNVRIIAATHRDLLQHAADGKFREDLYYRLNVFPIEVPALR 473 Query: 360 ERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLAR 419 R +DV L+AG + V LS ++ L Y +PGNVREL++ I RA+++++ Sbjct: 474 HRAEDVCLIAGEMINHFSKKLNKPMVELSDIDKSHLMDYHWPGNVRELQNLIERAIIISK 533 Query: 420 ATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNW 479 + + ++ P++ K + ++E I +AL Q Sbjct: 534 SGTINIKDVI-------PKMQSDEEHPPKTLKDKVYTSQELLKLEKENILKALKQTRWKI 586 Query: 480 A---ACARMLETDVANLHRLAKRLGLK 503 + A +L+ L K LGL+ Sbjct: 587 SGKNGAAELLQLPATTLASKIKVLGLE 613 >UniRef50_C1P9P9 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Bacillaceae RepID=C1P9P9_BACCO Length = 457 Score = 474 bits (1222), Expect = e-132, Method: Composition-based stats. Identities = 137/388 (35%), Positives = 212/388 (54%), Gaps = 25/388 (6%) Query: 117 PLF-AGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGD 175 P+F LIGA++++ ++ I L +S ++ + +L + + Sbjct: 91 PIFDNRGRLIGAVSVER------------DITQIVRLNDNLVSTSIELNELRQKMYTSYE 138 Query: 176 ATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRA 235 TPF +K G S + + A +D LI GE+GTGKE+ A+AIHEAS R Sbjct: 139 ETPFSKLK-----GKSRALRDTIQIAAKAAKTDAVTLILGESGTGKEICARAIHEASARK 193 Query: 236 VNPLVYLNCAALPESVAESELFGHVKGAFTGAISN-RSGKFEMADNGTLFLDEIGELSLA 294 P + +NC ++P ++ ESELFG+ G FTGA ++GK E AD GTLFLDEIGEL L Sbjct: 194 NGPFIPVNCGSIPSALFESELFGYEPGTFTGAEKKGKAGKIEEADGGTLFLDEIGELPLD 253 Query: 295 LQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLS 354 +Q KLLRVLQ I R+GD +++VR +AATN+D+ + + FR+DL++RL+V ++ Sbjct: 254 MQVKLLRVLQEKVIYRIGDASGRKINVRFIAATNQDIEKMMKEKTFRSDLYYRLNVIQIT 313 Query: 355 VPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRA 414 +PPLR R DD+ +LA YF +Q ++ + L+ A + LQ Y +PGNVREL + + R Sbjct: 314 MPPLRVRTDDIPVLARYFLKQFAVQYKMPEPELAPDALSFLQAYHWPGNVRELRNLMERM 373 Query: 415 VVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQ 474 V+L+ +L F + P +A+P L E +++ I +AL + Sbjct: 374 VILSEKPFIDRASLLR-----FFQGNETQPSGSAIPE-SGTLPVEKENMEKQLIEKALRK 427 Query: 475 NHHNWAACARMLETDVANLHRLAKRLGL 502 N +A A+ L L++ K+ G+ Sbjct: 428 AGGNKSAAAKELGISRVTLYQKLKKFGI 455 >UniRef50_C8X1R7 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X1R7_DESRD Length = 471 Score = 474 bits (1222), Expect = e-132, Method: Composition-based stats. Identities = 140/350 (40%), Positives = 199/350 (56%), Gaps = 5/350 (1%) Query: 155 GALSNALLIEQLESQNMLPGDATPF--EAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVL 212 G + + +L+ +AT + ++G S M ++ + AAS VL Sbjct: 118 GIVETVTDMTELQKARHKAEEATRLLGQHYSLGNIMGKSEVMQEVFSRVRAAAASRSTVL 177 Query: 213 ISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRS 272 I GE+GTGKEL+A+AIH S +A P V +NC+AL E++ ESELFGHVKGAFTGA+ +R+ Sbjct: 178 IQGESGTGKELIARAIHYNSDQADQPFVTVNCSALTETLLESELFGHVKGAFTGAVRDRA 237 Query: 273 GKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLR 332 G+FE A G++FLDEIGELS +Q KLLRVLQ +++RVGD + +D+RV+ AT+RDL Sbjct: 238 GRFEEAHRGSIFLDEIGELSQTIQVKLLRVLQEREVERVGDSQTRTIDIRVIVATHRDLN 297 Query: 333 EEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGAR 392 E + G FR DL++RL VFP+++PPLR+R +D+ LL +F + G L+ A Sbjct: 298 ELLAQGVFRQDLYYRLKVFPITLPPLRQRREDLPLLVNHFIAKQNEATGKRVTGLAPEAM 357 Query: 393 NLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVV 452 L+ Y +PGNVRELE+AI A VL + + P + A VP Sbjct: 358 RLVFEYHWPGNVRELENAIEHAFVLTSGEQIQVNDL--PAEIITPRPSPERAREAGVPRT 415 Query: 453 KQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 + R+ E RE + L N N AA AR L + + K+ G+ Sbjct: 416 AGS-RQHHEQPDREQLLALLEANQWNKAAVARQLGVSRTAVWKYMKKWGI 464 >UniRef50_B8JEK1 Sensor protein n=14 Tax=cellular organisms RepID=B8JEK1_ANAD2 Length = 1079 Score = 474 bits (1222), Expect = e-132, Method: Composition-based stats. Identities = 164/461 (35%), Positives = 237/461 (51%), Gaps = 9/461 (1%) Query: 42 ALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGL 101 L+ D +A L + A G L +A + D + +D ++PD DG+ Sbjct: 622 VLVVDDDPGTRKVARANLTLEGFEVLVASSGAEALARLAES-DPLAMVSDLKMPD-LDGI 679 Query: 102 IPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNAL 161 + + + + L + ++ M+ + + LR A L +A+ Sbjct: 680 ALMERVHALRPSLPVVLVTAHATVET-AVEAMRKGALHYLT-KPLRF--DELALVLRHAV 735 Query: 162 LIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGK 221 E+ +++L A +++G +P M ++ +E VA +D VL+ GETGTGK Sbjct: 736 AHERAR-RDVLRLRGELERAAGFEEIVGTAPAMREVFAMVEQVAPADATVLLRGETGTGK 794 Query: 222 ELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNG 281 ELVA+AIH SPR P V +NC A+P+ + ESE FGH KGAFTGA++ R G+FE AD Sbjct: 795 ELVARAIHRRSPRRDRPFVAVNCTAIPKDLMESEFFGHEKGAFTGAVARRVGRFEQADGS 854 Query: 282 TLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFR 341 TLFLDE+G+L LA+QAKLLRVLQ +I RVG L+VDVR++AATNRDL V GRFR Sbjct: 855 TLFLDEVGDLDLAIQAKLLRVLQEQEITRVGARDPLKVDVRIVAATNRDLEALVHEGRFR 914 Query: 342 ADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFP 401 DLF+RL+V PL +PPLRER D+ L +F R G + V + Y +P Sbjct: 915 DDLFYRLNVIPLRLPPLRERPQDLPALLEHFLRSFAQRYGRTSPVPPPDLLAAARAYPWP 974 Query: 402 GNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATE 461 GNVREL + RAV++ A + A P+ P ++P+++ R E Sbjct: 975 GNVRELRNLCERAVLMGWAAVA-PIFGAGAGVTPRPDAGAGVPVDTSLPLLEARQR-LVE 1032 Query: 462 AFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 F+RE + + L + AR NL+ K GL Sbjct: 1033 RFEREYLTRLLKERRGRIGEVARAAGIAERNLYEKMKAYGL 1073 >UniRef50_C3X424 Transcriptional regulator containing GAF n=2 Tax=Oxalobacter formigenes RepID=C3X424_OXAFO Length = 540 Score = 474 bits (1221), Expect = e-132, Method: Composition-based stats. Identities = 151/440 (34%), Positives = 219/440 (49%), Gaps = 20/440 (4%) Query: 76 LEAIARAGDVVRFPADSELPD----PYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLD 131 L A R + + F ++ L + PY + + + LPL + NL+G L + Sbjct: 98 LGAALRKQEKILFNRNAILSNAAKYPY---VARLAGDGLQVLLYLPLVSAGNLLGTLGVG 154 Query: 132 GMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPF------EAVKQT 185 +P F + L I+A A AL L + + + + +P E Sbjct: 155 SFKPCHFTPETMALLNRISARLAVALDVMLSHRKKTAPASVSPNESPITGDNIEETPPPH 214 Query: 186 QMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCA 245 +IG S + + ++IEIVA+S+ VL+ GETGTGK L+A+ IH S R +V +NC Sbjct: 215 HLIGHSVAIQSILQQIEIVASSNATVLLQGETGTGKGLIAQTIHNLSDRKARDMVKMNCT 274 Query: 246 ALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQY 305 A+P + ESELFGH KGAFTGA++ R G FE AD TLFLDEIG++ L LQ KLL VLQ Sbjct: 275 AIPSELMESELFGHEKGAFTGALNKRIGHFEQADKSTLFLDEIGDMPLDLQPKLLSVLQE 334 Query: 306 GDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDV 365 I+R+G + VDVR +AATN DL ++ FR+DLF+RL+VFP++VPPLRER +D+ Sbjct: 335 HQIRRLGSPHTISVDVRCIAATNCDLVAKIEDKTFRSDLFYRLNVFPITVPPLRERAEDI 394 Query: 366 ILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGD 425 LA +F + + + L+ +PGN+RELE+ + RAV+L G Sbjct: 395 PSLARFFIRKYAREMNRHITGIPSETLALMTRLPWPGNIRELENVMERAVILTSQ---GG 451 Query: 426 EVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNH---HNWAAC 482 + L + T +P A ++T+ AL + Sbjct: 452 VLNLSPESL-LSYTTQNSPLTVHASSQPVVPVPAIPETDKDTLVNALRETGGQIGGKTGA 510 Query: 483 ARMLETDVANLHRLAKRLGL 502 A L L KR G+ Sbjct: 511 AARLGLKRTTLLARLKRFGI 530 >UniRef50_A8V246 Two component, sigma54 specific, transcriptional regulator, Fis family protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8V246_9AQUI Length = 454 Score = 474 bits (1221), Expect = e-132, Method: Composition-based stats. Identities = 132/393 (33%), Positives = 205/393 (52%), Gaps = 5/393 (1%) Query: 115 GLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPG 174 + + + L M+ + F E L N E+ E + Sbjct: 59 PIAIIDKNAVKSNLAALIMKIMSNNYFDYIEYPFKKNDLEKVLKNINKKEKDEKEIYYIR 118 Query: 175 DATPFEAVKQT---QMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEA 231 E + +IG SP M + K VA +DL VLI GETGTGKEL A+ + + Sbjct: 119 KKETDETILCQYLCSIIGSSPYMKNICKLAGEVAPTDLPVLIIGETGTGKELFARGLWKL 178 Query: 232 SPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGEL 291 S R P + +NCAA+PE++ ESELFG+ KGAFTGA + + GKFE+A+ GT+FLDEIGE+ Sbjct: 179 SKRKDKPFIAINCAAIPENLIESELFGYEKGAFTGAETQKKGKFEIANGGTIFLDEIGEM 238 Query: 292 SLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVF 351 L Q+KLLRVLQ G RVG + + VDVRV+AATN+DL + V G+FR DL++RL+V Sbjct: 239 PLEAQSKLLRVLQEGSFYRVGGEEEINVDVRVIAATNKDLSQMVKEGKFREDLYYRLNVI 298 Query: 352 PLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAI 411 +PPLRER +D+ + + + + + L+ + GN+RELE+ + Sbjct: 299 TFKLPPLRERKEDIPYIVECIINKNNKKINKNIEGFTKDYIEKLKSRYWKGNIRELENVV 358 Query: 412 HRAVVLARAT--RSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIR 469 R++V R + D LE P++ ++ + +N ++ E ++ I Sbjct: 359 IRSMVFCRDSILSITDLEFLEEGKEEIPDLYDKLKDIIEQLINHENAKQTKEKIEKILIE 418 Query: 470 QALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 L +++ N + A++L + A L + ++L + Sbjct: 419 NVLKKSNFNLSKSAQILGINRATLRKKLEKLNI 451 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_C1NCQ8 YgaA protein n=5 Tax=Escherichia RepID=C1NCQ8_9ESCH 634 e-180 UniRef50_B3Q676 Transcriptional regulator, NifA subfamily, Fis F... 611 e-173 UniRef50_P12626 Nitrogen fixation protein anfA n=11 Tax=Bacteria... 608 e-172 UniRef50_A3ER00 Transcriptional regulator, NifA, Fis Family n=3 ... 607 e-172 UniRef50_A6TCX4 Anaerobic nitric oxide reductase transcription r... 605 e-172 UniRef50_B8FJT8 Two component, sigma54 specific, transcriptional... 604 e-171 UniRef50_C8QWL5 Transcriptional regulator, NifA, Fis Family n=1 ... 603 e-171 UniRef50_P27713 Nif-specific regulatory protein n=3 Tax=Burkhold... 601 e-170 UniRef50_Q1NW39 Nif-specific regulatory protein n=2 Tax=Deltapro... 598 e-169 UniRef50_B3QSR6 Transcriptional regulator, NifA, Fis Family n=2 ... 595 e-168 UniRef50_B6WRE4 Putative uncharacterized protein n=1 Tax=Desulfo... 595 e-168 UniRef50_C8W392 Two component, sigma54 specific, transcriptional... 593 e-168 UniRef50_B0SC18 Transcriptional regulator n=7 Tax=Bacteria RepID... 591 e-167 UniRef50_B5ER80 Transcriptional regulator, NifA, Fis Family n=2 ... 591 e-167 UniRef50_A7K2J6 Anaerobic nitric oxide reductase transcription r... 589 e-167 UniRef50_A4J616 Two component, sigma54 specific, transcriptional... 588 e-166 UniRef50_Q2LXW8 Nif-specific regulatory protein with sigma 54 in... 587 e-166 UniRef50_A4J443 Two component, sigma54 specific, transcriptional... 587 e-166 UniRef50_Q3AR86 DNA-binding protein Fis / transcriptional regula... 586 e-166 UniRef50_Q3A356 Two component, sigma54 specific, transcriptional... 586 e-166 UniRef50_C9RBQ4 Two component, sigma54 specific, transcriptional... 583 e-165 UniRef50_A0LFR7 Transcriptional regulator, NifA subfamily, Fis F... 583 e-165 UniRef50_B5YH04 Transcriptional regulator n=1 Tax=Thermodesulfov... 582 e-164 UniRef50_B8IZX3 Transcriptional regulator, NifA subfamily, Fis F... 581 e-164 UniRef50_Q2LSK2 Sigma-54 dependent transcriptional regulator n=4... 581 e-164 UniRef50_Q4K714 Sigma-54 dependent DNA-binding response regulato... 581 e-164 UniRef50_D0MEW0 Transcriptional regulator, NifA subfamily, Fis F... 580 e-164 UniRef50_C4XRA9 Transcriptional regulatory protein ZraR n=9 Tax=... 580 e-164 UniRef50_C0GSN4 Transcriptional regulator, NifA subfamily, Fis F... 579 e-164 UniRef50_Q1D4K8 Sigma-54 dependent DNA-binding response regulato... 577 e-163 UniRef50_Q2LUG8 Response regulator containing CheY-like receiver... 576 e-163 UniRef50_C8WZC4 Two component, sigma54 specific, transcriptional... 576 e-163 UniRef50_Q06065 Acetoacetate metabolism regulatory protein atoC ... 575 e-162 UniRef50_B8FEY3 Two component, sigma54 specific, transcriptional... 573 e-162 UniRef50_Q1D6H5 Sigma-54 dependent DNA-binding response regulato... 573 e-162 UniRef50_Q21UU9 Two component, sigma54 specific, transcriptional... 573 e-162 UniRef50_C1SIC3 Transcriptional regulator containing GAF, AAA-ty... 572 e-161 UniRef50_A9G6P0 Sigma-54 dependent DNA-binding response regulato... 571 e-161 UniRef50_C7LX45 Transcriptional regulator, NifA subfamily, Fis F... 570 e-161 UniRef50_A9A0V6 Two component, sigma54 specific, transcriptional... 569 e-161 UniRef50_Q1PV55 Strongly similar to sigma 54 response regulator ... 568 e-160 UniRef50_Q5E3W8 Anaerobic nitric oxide reductase transcription r... 568 e-160 UniRef50_Q027A1 Two component, sigma54 specific, transcriptional... 567 e-160 UniRef50_Q1INE5 Two component, sigma54 specific, transcriptional... 567 e-160 UniRef50_A0LH02 Transcriptional regulator, NifA subfamily, Fis F... 567 e-160 UniRef50_Q3A2M3 Two component, sigma54 specific, transcriptional... 567 e-160 UniRef50_B5YL21 Acetoacetate metabolism regulatory protein AtoC ... 565 e-159 UniRef50_B6YRB5 Nif-specific regulatory protein n=1 Tax=Candidat... 565 e-159 UniRef50_B5JMU1 Sigma-54 interaction domain family n=1 Tax=Verru... 565 e-159 UniRef50_C9RS71 Transcriptional regulator, NifA subfamily, Fis F... 565 e-159 UniRef50_Q2IQM1 Two component, sigma54 specific, transcriptional... 564 e-159 UniRef50_Q2LRW3 Response regulator containing sigma 54 interacti... 564 e-159 UniRef50_A6M003 Two component, sigma54 specific, transcriptional... 564 e-159 UniRef50_Q1Q1B9 Strong similarity to sigma 54 response regulator... 563 e-159 UniRef50_B3DZA5 Transcriptional regulator NifA, contains GAF, AA... 563 e-159 UniRef50_O87455 Regulatory protein luxO n=68 Tax=Gammaproteobact... 562 e-158 UniRef50_Q026M7 Transcriptional regulator, NifA subfamily, Fis F... 562 e-158 UniRef50_D1R5K3 Putative uncharacterized protein n=1 Tax=Parachl... 561 e-158 UniRef50_D0LFQ8 Two component, sigma54 specific, transcriptional... 561 e-158 UniRef50_Q1PYK0 Strongly similar to sigma 54 response regulator ... 561 e-158 UniRef50_Q39SU6 Two component, sigma54 specific, transcriptional... 561 e-158 UniRef50_Q7M8U4 TRANSCRIPTIONAL REGULATOR (NIFA FAMILY) n=1 Tax=... 560 e-158 UniRef50_A7HBA5 Two component, sigma54 specific, transcriptional... 559 e-158 UniRef50_A8GG93 Anaerobic nitric oxide reductase transcription r... 559 e-158 UniRef50_D1CFK1 Two component, sigma54 specific, transcriptional... 558 e-157 UniRef50_B5YHF3 Acetoacetate metabolism regulatory protein AtoC ... 557 e-157 UniRef50_Q1D552 Sigma-54 dependent DNA-binding reponse regulator... 557 e-157 UniRef50_A1ATK4 Two component, sigma54 specific, transcriptional... 557 e-157 UniRef50_B5YHK7 SasR n=1 Tax=Thermodesulfovibrio yellowstonii DS... 557 e-157 UniRef50_B8IZ33 Two component, sigma54 specific, transcriptional... 556 e-157 UniRef50_Q1PZT5 Strongly similar to sigma 54 response regulatory... 556 e-157 UniRef50_Q1JZC1 Two component, sigma54 specific, transcriptional... 556 e-157 UniRef50_C4LCC7 Transcriptional regulator, NifA subfamily, Fis F... 556 e-157 UniRef50_Q6ARB9 Probable two-component system response regulator... 555 e-156 UniRef50_B2S3B3 Response regulatory protein n=28 Tax=Spirochaeta... 555 e-156 UniRef50_B3DZ60 DNA-binding response regulator, NtrC family (Con... 554 e-156 UniRef50_B4D0Z8 Two component, sigma54 specific, transcriptional... 553 e-156 UniRef50_A7HIM1 Two component, sigma54 specific, transcriptional... 553 e-156 UniRef50_B9M610 Two component, sigma54 specific, transcriptional... 553 e-156 UniRef50_Q1Q0T6 Strongly similar to sigma 54 response regulator ... 553 e-156 UniRef50_D2QGL7 Two component, sigma54 specific, transcriptional... 552 e-156 UniRef50_A5G9U3 Two component, sigma54 specific, transcriptional... 552 e-155 UniRef50_Q1PYM7 Similar to sigma 54 response regulator n=1 Tax=C... 552 e-155 UniRef50_C6E9E0 Two component, sigma54 specific, transcriptional... 552 e-155 UniRef50_C8QYP0 Two component, sigma54 specific, transcriptional... 552 e-155 UniRef50_D2MLD9 Two component, sigma54 specific, transcriptional... 552 e-155 UniRef50_A0LJL7 Two component, sigma54 specific, transcriptional... 551 e-155 UniRef50_Q1D1F9 DNA-binding reponse regulator HsfA n=3 Tax=Myxoc... 551 e-155 UniRef50_Q0EZK3 Response regulator of hydrogenase 3 activity (Se... 551 e-155 UniRef50_Q73KY8 Sigma-54 dependent transcriptional regulator, pu... 551 e-155 UniRef50_Q30WZ9 Two component transcriptional regulator, Fis fam... 551 e-155 UniRef50_C6WY59 Two component, sigma54 specific, transcriptional... 551 e-155 UniRef50_B8DLN3 Two component, sigma54 specific, transcriptional... 550 e-155 UniRef50_P71229 Hydrogenase-4 transcriptional activator n=45 Tax... 550 e-155 UniRef50_Q8Z333 Transcriptional regulatory protein zraR n=36 Tax... 550 e-155 UniRef50_Q1NVH0 Response regulator receiver n=2 Tax=delta proteo... 549 e-155 UniRef50_D2TTF4 Two-component system response regulator n=3 Tax=... 549 e-154 UniRef50_C8R0P5 Two component, sigma54 specific, transcriptional... 548 e-154 UniRef50_Q9APD9 Transcriptional regulatory protein zraR n=89 Tax... 548 e-154 UniRef50_Q1NIP6 Response regulator receiver n=2 Tax=Deltaproteob... 548 e-154 UniRef50_A9AYA4 Two component, sigma54 specific, transcriptional... 547 e-154 UniRef50_B1Y713 Transcriptional regulator, NifA, Fis Family n=4 ... 547 e-154 UniRef50_B3E4S0 Two component, sigma54 specific, transcriptional... 547 e-154 UniRef50_A4VJ57 Nitrogen fixation positive regulatory protein n=... 547 e-154 UniRef50_C6MX44 Two component, sigma54 specific, transcriptional... 546 e-154 UniRef50_A0LFW8 Two component, sigma54 specific, transcriptional... 546 e-154 UniRef50_Q1PYI3 Strongly similar to sigma 54 response regulatory... 546 e-154 UniRef50_P19323 Formate hydrogenlyase transcriptional activator ... 546 e-154 UniRef50_D1TMK5 Transcriptional regulator NifA n=1 Tax=Burkholde... 545 e-153 UniRef50_P03027 Nif-specific regulatory protein n=14 Tax=Proteob... 545 e-153 UniRef50_B8FJD2 Transcriptional regulator, NifA subfamily, Fis F... 545 e-153 UniRef50_B3E6R3 Two component, sigma54 specific, transcriptional... 545 e-153 UniRef50_D2R8T8 Two component, sigma54 specific, transcriptional... 545 e-153 UniRef50_A7HGB6 Two component, sigma54 specific, transcriptional... 545 e-153 UniRef50_Q6MMW8 Acetoacetate metabolism regulatory protein atoC ... 545 e-153 UniRef50_D0TB92 Two-component system response regulator n=1 Tax=... 545 e-153 UniRef50_B8JAZ2 Two component, sigma54 specific, transcriptional... 544 e-153 UniRef50_B8FZI3 Two component, sigma54 specific, transcriptional... 544 e-153 UniRef50_Q2RVQ1 Transcriptional regulator, NifA, Fis family n=3 ... 543 e-153 UniRef50_C1F1R9 Mutant NtrC-like activator n=1 Tax=Acidobacteriu... 543 e-153 UniRef50_Q12MS3 Sigma-54 factor, interaction region n=2 Tax=Alte... 543 e-153 UniRef50_C7PQF6 Transcriptional regulator, NifA subfamily, Fis F... 543 e-153 UniRef50_A0LND9 Two component, sigma54 specific, transcriptional... 543 e-153 UniRef50_B8DQY9 Transcriptional regulator, NifA subfamily, Fis F... 543 e-153 UniRef50_Q127H6 Transcriptional regulator, NifA subfamily, Fis f... 543 e-153 UniRef50_Q1D217 Sigma-54 dependent DNA-binding reponse regulator... 542 e-152 UniRef50_Q2RHS4 Sigma54 specific transcriptional regulator, Fis ... 542 e-152 UniRef50_Q1PZ68 Strongly similar to sigma 54 response regulator ... 542 e-152 UniRef50_P40734 Formate hydrogenlyase transcriptional activator ... 542 e-152 UniRef50_A6EHC4 Sigma-54-dependent transcriptional regulator n=1... 542 e-152 UniRef50_Q1D5E1 Sigma-54 dependent transcriptional regulator, Fi... 542 e-152 UniRef50_C1SGB7 Response regulator with CheY-like receiver, AAA-... 541 e-152 UniRef50_C9RIK1 Transcriptional regulator, NifA subfamily, Fis F... 541 e-152 UniRef50_C8WE21 Transcriptional regulator, NifA, Fis Family n=4 ... 541 e-152 UniRef50_A4CKT3 Transcriptional regulator, NifA subfamily, Fis F... 541 e-152 UniRef50_B8FLD5 Transcriptional regulator, NifA subfamily, Fis F... 540 e-152 UniRef50_D2L943 Two component, sigma54 specific, transcriptional... 540 e-152 UniRef50_A9F1Z6 Nitrogen regulation protein NR(I) n=5 Tax=Myxoco... 540 e-152 UniRef50_C0QRG3 Transcriptional regulatory protein ZraR n=2 Tax=... 540 e-152 UniRef50_B5YK20 Response regulator HsfA n=1 Tax=Thermodesulfovib... 540 e-152 UniRef50_Q1PWJ3 Strongly similar to sigma 54 response regulator ... 540 e-152 UniRef50_A8ZYR3 Two component, sigma54 specific, transcriptional... 539 e-152 UniRef50_A1AUC3 Two component, sigma54 specific, transcriptional... 539 e-152 UniRef50_B8GTB8 Two component, sigma54 specific, transcriptional... 539 e-151 UniRef50_D0LLW1 Two component, sigma54 specific, transcriptional... 539 e-151 UniRef50_Q1NPJ0 Response regulator receiver n=1 Tax=delta proteo... 539 e-151 UniRef50_B1ZR63 Two component, sigma54 specific, transcriptional... 539 e-151 UniRef50_C8R1J5 Two component, sigma54 specific, transcriptional... 538 e-151 UniRef50_Q39TH4 Transcriptional regulator, NifA subfamily, Fis f... 538 e-151 UniRef50_A1AL12 Transcriptional regulator, Fis family n=1 Tax=Pe... 538 e-151 UniRef50_B3DYD7 DNA-binding response regulator, NtrC family (Con... 538 e-151 UniRef50_Q1IL93 Two component, sigma54 specific, transcriptional... 537 e-151 UniRef50_B5Y7I9 Acetoacetate metabolism regulatory protein AtoC ... 536 e-151 UniRef50_Q1IQS1 Two component, sigma54 specific, transcriptional... 536 e-151 UniRef50_Q1D574 Sigma-54 dependent transcriptional regulator, Fi... 536 e-151 UniRef50_Q1DD85 Sigma-54 dependent DNA-binding response regulato... 536 e-151 UniRef50_Q07WT9 Transcriptional regulator, Fis family protein n=... 536 e-151 UniRef50_B4U9N2 Transcriptional regulator, NifA subfamily, Fis F... 536 e-151 UniRef50_P09133 Nif-specific regulatory protein n=18 Tax=Rhizobi... 536 e-151 UniRef50_B8DQ72 Two component, sigma54 specific, transcriptional... 536 e-151 UniRef50_C0QIQ0 Sigma-54 dependent DNA-binding response regulato... 536 e-150 UniRef50_C0GSE0 Sigma54 specific transcriptional regulator, Fis ... 536 e-150 UniRef50_Q1ILI0 Two component, sigma54 specific, transcriptional... 535 e-150 UniRef50_C1A7J8 Putative NtrC family two-component response regu... 535 e-150 UniRef50_Q893M0 Putative sigma-54 interacting protein n=1 Tax=Cl... 535 e-150 UniRef50_P05407 Nif-specific regulatory protein n=11 Tax=Rhizobi... 535 e-150 UniRef50_P30667 Nif-specific regulatory protein n=6 Tax=Bacteria... 535 e-150 UniRef50_Q1IRB0 Two component, sigma54 specific, transcriptional... 535 e-150 UniRef50_Q2RXL4 Transcriptional regulator, NifA subfamily, Fis f... 535 e-150 UniRef50_P28787 Nitrogen regulation protein NR(I) n=29 Tax=Gamma... 534 e-150 UniRef50_B5EFV3 Two component, sigma54 specific, transcriptional... 534 e-150 UniRef50_B0VES5 Putative uncharacterized protein n=1 Tax=Candida... 533 e-150 UniRef50_Q1ITP4 Two component, sigma54 specific, transcriptional... 533 e-150 UniRef50_Q023H8 Two component, sigma54 specific, transcriptional... 533 e-150 UniRef50_B3EAH2 Two component, sigma54 specific, transcriptional... 533 e-150 UniRef50_B1ZMV8 Two component, sigma54 specific, transcriptional... 533 e-150 UniRef50_Q53206 Nif-specific regulatory protein n=5 Tax=Alphapro... 532 e-149 UniRef50_A9ET26 Transcriptional regulator n=2 Tax=Myxococcales R... 532 e-149 UniRef50_B3U4Q6 Nif-specific regulatory protein n=3 Tax=Bacteria... 531 e-149 UniRef50_C1A9W9 NtrC family two-component response regulator n=1... 531 e-149 UniRef50_A5GBB3 Two component, sigma-54 specific, transcriptiona... 531 e-149 UniRef50_A6DT60 Sigma-54 dependent transcriptional regulator/res... 531 e-149 UniRef50_UPI00016C54BB two component, sigma54 specific, transcri... 531 e-149 UniRef50_Q311G4 DNA-binding protein Fis / transcriptional regula... 531 e-149 UniRef50_B5EHD0 Two component, sigma54 specific, transcriptional... 531 e-149 UniRef50_Q306N7 PilR2 n=17 Tax=Deltaproteobacteria RepID=Q306N7_... 531 e-149 UniRef50_A8ZU14 Two component, sigma54 specific, transcriptional... 530 e-149 UniRef50_B8F9K7 Two component, sigma54 specific, transcriptional... 530 e-149 UniRef50_P0AFB9 Nitrogen regulation protein NR(I) n=502 Tax=Bact... 530 e-149 UniRef50_A6GDL8 Sigma-54 dependent transcriptional regulator, Fi... 530 e-149 UniRef50_A0LKM2 Two component, sigma54 specific, transcriptional... 530 e-149 UniRef50_B8JEK1 Sensor protein n=14 Tax=cellular organisms RepID... 530 e-149 UniRef50_B8DQD3 Two component, sigma54 specific, transcriptional... 530 e-149 UniRef50_Q1PVM8 Similar to sigma-54 dependent transcriptional re... 530 e-149 UniRef50_Q7UNH5 Acetoacetate metabolism regulatory protein ATOC ... 529 e-148 UniRef50_Q3IJS0 Transcriptional regulator of anaerobic NO reduct... 529 e-148 UniRef50_A0LLZ0 Two component, sigma54 specific, transcriptional... 529 e-148 UniRef50_Q9K8Q5 Two-component response regulator in acetoacetate... 529 e-148 UniRef50_A6EHB3 Sigma-54-dependent transcriptional regulator n=1... 528 e-148 UniRef50_B4DAQ1 Transcriptional regulator, NifA subfamily, Fis F... 528 e-148 UniRef50_C1ZJW6 Transcriptional regulator containing GAF, AAA-ty... 527 e-148 UniRef50_Q1IRW0 Two component, sigma54 specific, transcriptional... 527 e-148 UniRef50_D0LIH3 Two component, sigma54 specific, transcriptional... 527 e-148 UniRef50_A0L6X2 Transcriptional regulator, NifA, Fis Family n=6 ... 527 e-148 UniRef50_C6W352 Sigma54 specific transcriptional regulator, Fis ... 527 e-148 UniRef50_Q1ZUC7 Formate hydrogenlyase transcriptional activator ... 526 e-148 UniRef50_B8DK61 Two component, sigma54 specific, transcriptional... 526 e-148 UniRef50_B8FB78 Transcriptional regulator, NifA subfamily, Fis F... 526 e-148 UniRef50_B5ZJF6 Transcriptional regulator, NifA, Fis Family n=4 ... 526 e-147 UniRef50_UPI00016C3921 transcriptional regulator, NifA subfamily... 526 e-147 UniRef50_C6HYC9 Two component, sigma54 specific, transcriptional... 525 e-147 UniRef50_Q9K4U8 Nitric oxide reductase transcription regulator n... 525 e-147 UniRef50_B2V8F5 Two component, sigma54 specific, transcriptional... 525 e-147 UniRef50_B4RA20 Sigma-54-dependent transcriptional regulator (Ac... 525 e-147 UniRef50_D2QLL9 Transcriptional regulator, NifA subfamily, Fis F... 525 e-147 UniRef50_C1DXU0 Acetoacetate metabolism regulatory protein AtoC ... 525 e-147 UniRef50_UPI00016C3E44 probable response regulatory protein (ato... 525 e-147 UniRef50_A9FB29 Sigma-54 dependent DNA-binding response regulato... 525 e-147 UniRef50_B5EIR5 Transcriptional regulator, NifA subfamily, Fis F... 524 e-147 UniRef50_D0KWC0 Transcriptional regulator, NifA subfamily, Fis F... 524 e-147 UniRef50_B4UAL8 Two component, sigma54 specific, transcriptional... 524 e-147 UniRef50_Q3A5A0 Two component, sigma54 specific, transcriptional... 524 e-147 UniRef50_C0ZKW7 Two-component response regulator n=1 Tax=Breviba... 523 e-147 UniRef50_D2QZ64 Transcriptional regulator, NifA subfamily, Fis F... 522 e-146 UniRef50_Q01S08 Transcriptional regulator, NifA subfamily, Fis F... 522 e-146 UniRef50_C1A631 Putative NtrC family two-component response regu... 522 e-146 UniRef50_C7PEX2 Sigma54 specific transcriptional regulator, Fis ... 522 e-146 UniRef50_C6VVC1 Sigma54 specific transcriptional regulator, Fis ... 522 e-146 UniRef50_C1F0X6 Sigma-54 dependent transcriptional regulator, Fi... 521 e-146 UniRef50_Q1DDD5 Sigma-54 dependent DNA-binding response regulato... 521 e-146 UniRef50_A9EN62 Sigma-54 dependent transcriptional regulator n=1... 521 e-146 UniRef50_UPI00016C44AF cetoacetate metabolism regulatory protein... 521 e-146 UniRef50_B3E6U1 Two component, sigma54 specific, transcriptional... 521 e-146 UniRef50_D2QY56 Two component, sigma54 specific, transcriptional... 521 e-146 UniRef50_D0LTW0 Two component, sigma54 specific, transcriptional... 520 e-146 UniRef50_A7HFP7 Transcriptional regulator, NifA subfamily, Fis F... 520 e-146 UniRef50_C7PUT4 Two component, sigma54 specific, transcriptional... 520 e-146 UniRef50_C7PN78 Sigma54 specific transcriptional regulator, Fis ... 520 e-146 UniRef50_Q3ABV5 Sigma-54 dependent transcriptional regulator n=3... 519 e-146 UniRef50_UPI00016C585F ornithine decarboxylase inhibitor-putativ... 519 e-146 UniRef50_A6G018 Two component, sigma54 specific, transcriptional... 519 e-146 UniRef50_A8UUR2 Transcriptional regulator (NtrC family) protein ... 519 e-146 UniRef50_A6GJF4 Sigma-54 dependent, Vanadium nitrogenase transcr... 518 e-145 UniRef50_C0QE85 FhlA n=1 Tax=Desulfobacterium autotrophicum HRM2... 518 e-145 Sequences not found previously or not previously below threshold: UniRef50_Q2LXQ0 Response regulator with sigma 54 interaction dom... 545 e-153 UniRef50_B5JH96 Sigma-54 interaction domain family n=1 Tax=Verru... 540 e-152 UniRef50_B5JMF6 Sigma-54 interaction domain family n=2 Tax=Verru... 535 e-150 UniRef50_B9M1N5 Two component, sigma54 specific, transcriptional... 525 e-147 UniRef50_Q2LRZ0 Sigma-54 dependent transcriptional regulator n=1... 523 e-147 UniRef50_D2U436 Two-component system, NtrC family, nitrogen regu... 520 e-146 >UniRef50_C1NCQ8 YgaA protein n=5 Tax=Escherichia RepID=C1NCQ8_9ESCH Length = 529 Score = 634 bits (1636), Expect = e-180, Method: Composition-based stats. Identities = 504/504 (100%), Positives = 504/504 (100%) Query: 1 MSFSVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLA 60 MSFSVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLA Sbjct: 26 MSFSVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLA 85 Query: 61 KDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFA 120 KDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFA Sbjct: 86 KDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFA 145 Query: 121 GQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFE 180 GQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFE Sbjct: 146 GQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFE 205 Query: 181 AVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLV 240 AVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLV Sbjct: 206 AVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLV 265 Query: 241 YLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLL 300 YLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLL Sbjct: 266 YLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLL 325 Query: 301 RVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRE 360 RVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRE Sbjct: 326 RVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRE 385 Query: 361 RGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARA 420 RGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARA Sbjct: 386 RGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARA 445 Query: 421 TRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWA 480 TRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWA Sbjct: 446 TRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWA 505 Query: 481 ACARMLETDVANLHRLAKRLGLKD 504 ACARMLETDVANLHRLAKRLGLKD Sbjct: 506 ACARMLETDVANLHRLAKRLGLKD 529 >UniRef50_B3Q676 Transcriptional regulator, NifA subfamily, Fis Family n=9 Tax=Bacteria RepID=B3Q676_RHOPT Length = 561 Score = 611 bits (1576), Expect = e-173, Method: Composition-based stats. Identities = 173/507 (34%), Positives = 251/507 (49%), Gaps = 20/507 (3%) Query: 5 VDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAID--GLAKD 62 + +L I L + ++ +RQ + ++ YD D GL ++ Sbjct: 52 LQILFRINQVLTQNADLATLVSIILDGMRQQMRMQRGVMMLYDRHSDAIFIHDSFGLTEE 111 Query: 63 VLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVH--ACVGLPLFA 120 GR G + G + P + PD D + K A +P+ Sbjct: 112 ERGRGIYAPGEGITGKVVETGKPIIIPRVIDSPDFLDRTRAHNKGRKQDKLAFFCVPIVL 171 Query: 121 GQNLIGALTLDGMQPDQFDV-FSDEELRLIAALAAGALSNALLIE----QLESQNMLPGD 175 Q ++G + + + +Q + E L ++A+L A A+ L+ +LE++N Sbjct: 172 AQKVLGTICAERVYMNQRLLNQDAELLAMVASLIAPAVELYLIENVDKVRLETENRRLKS 231 Query: 176 ATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRA 235 + + +IG S M ++ + VA++ VL+ GE+G GKELVA A+H SP A Sbjct: 232 ELK-QRFRPANIIGNSKPMQEVYAMVHKVASTKATVLLLGESGVGKELVASALHYNSPVA 290 Query: 236 VNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLAL 295 P + NCAALPE++AESELFGH +GAFT AI+ G FE A GT+FLDE+GELSL Sbjct: 291 DGPFIKANCAALPEALAESELFGHERGAFTSAIATHKGYFEQASGGTIFLDEVGELSLPT 350 Query: 296 QAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSV 355 QAKLLRVLQ +RVG + ++VDVR++AATNR+L E V G FR DLF+RL+VFP+++ Sbjct: 351 QAKLLRVLQERTFERVGGAKPVKVDVRIIAATNRNLAEMVAEGTFREDLFYRLNVFPITI 410 Query: 356 PPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAV 415 PPLR+RG DVI LA +F G +S A N+L Y +PGNVRELE+ I R+V Sbjct: 411 PPLRDRGSDVITLADHFVTTYSAEIGKPIKRISTPAINMLMSYHWPGNVRELENVIERSV 470 Query: 416 VLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQN 475 +LA + + T L + A + E I +AL + Sbjct: 471 ILAEEGVIHGYDLPPSLQTPTETGTG----------FSGTLEDRVTAVEYEMIVEALKAS 520 Query: 476 HHNWAACARMLETDVANLHRLAKRLGL 502 + N A L L +R GL Sbjct: 521 NGNVGQAATTLGLTRRMLGLRMERHGL 547 >UniRef50_P12626 Nitrogen fixation protein anfA n=11 Tax=Bacteria RepID=ANFA_AZOVI Length = 533 Score = 608 bits (1569), Expect = e-172, Method: Composition-based stats. Identities = 174/505 (34%), Positives = 252/505 (49%), Gaps = 18/505 (3%) Query: 5 VDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAID--GLAKD 62 + +L I+ + D ++ ++Q L+ + YD R D GL ++ Sbjct: 31 LPILYKISQIITGNADLADALSIVLGVMQQHLKMQRGIVTLYDMRAETIFIHDSFGLTEE 90 Query: 63 VLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFAGQ 122 R G + G + E PD + A +P+ Q Sbjct: 91 EKKRGIYAVGEGITGKVVETGKAIVARRLQEHPDFLGRTRVSRNGKAKAAFFCVPIMRAQ 150 Query: 123 NLIGALTLDGMQPDQFDVFSDEEL-----RLIAALAAGALSNALLIEQLESQNMLPGDAT 177 ++G + + + + + D EL +IA L L + +LE++N A Sbjct: 151 KVLGTIAAERVYMNPRLLKQDVELLTMIATMIAPLVELYLIENIERVRLENENRRLKHAL 210 Query: 178 PFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVN 237 E K + +IG S M ++ + I VA++ VLI GE+G GKELVA AIH SP A Sbjct: 211 K-ERFKPSNIIGNSKPMQEVYELIHKVASTKATVLILGESGVGKELVANAIHYNSPNAEA 269 Query: 238 PLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQA 297 LV NCA LPE++AESELFGH KG+FTGA++ G FE AD GT+FLDE+GELS +QA Sbjct: 270 ALVTSNCAPLPENLAESELFGHEKGSFTGALTMHKGCFEQADGGTIFLDEVGELSPTVQA 329 Query: 298 KLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPP 357 KL+RVLQ +RVG + ++VDVR++AATNR+L E V G FR DL++RL+VFP++VPP Sbjct: 330 KLVRVLQNRTFERVGGSKPVKVDVRIIAATNRNLVEMVEQGTFREDLYYRLNVFPITVPP 389 Query: 358 LRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVL 417 LRERG DVI LA +F G + +S A N+L Y +PGNVRELE+ + RAV+L Sbjct: 390 LRERGSDVIALADHFVSAFSRENGKNVKRISTPALNMLMSYHWPGNVRELENVMERAVIL 449 Query: 418 ARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHH 477 + + + + T L E +A + E I +AL + Sbjct: 450 SDDDVIHSYNLPPSLQTSKESGTA----------FGLTLEEKIKAVECEMIVEALKNSSG 499 Query: 478 NWAACARMLETDVANLHRLAKRLGL 502 + A+ L L +R G+ Sbjct: 500 HIGEAAKELGLARRMLGVRMERYGI 524 >UniRef50_A3ER00 Transcriptional regulator, NifA, Fis Family n=3 Tax=Leptospirillum RepID=A3ER00_9BACT Length = 553 Score = 607 bits (1565), Expect = e-172, Method: Composition-based stats. Identities = 167/523 (31%), Positives = 248/523 (47%), Gaps = 25/523 (4%) Query: 3 FSVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRY--DSRQFIPLAIDGLA 60 + I+ EL +R++ + + L S++L DS + GL+ Sbjct: 9 AELTAFFAISRELASSPDLDGALKRILEIMDEKLGLHRSSILLLENDSDELRTEIAHGLS 68 Query: 61 KDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQE--SLKVHACVGLPL 118 ++ + + EG A+ + GD + P S P + E S A + +PL Sbjct: 69 EEEIRKGRFKEGEGITGAVLKTGDPIVVPDISREPRFLNRTGSRSERASRGKLAFLAVPL 128 Query: 119 FAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATP 178 +G L+ D EELR++ +++ +L +Q + + Sbjct: 129 TFQARKVGVLSADCTIEPGSGNLD-EELRVLTTISSIIAQAVILRKQFVEERKKLEERAL 187 Query: 179 F------EAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEAS 232 + IG S M Q+ + + +VA S VLI GE+GTGKE+VAKAIH S Sbjct: 188 RLEHHLKDRYSIEGWIGRSRIMQQISESVHLVAKSRATVLIMGESGTGKEVVAKAIHFNS 247 Query: 233 PRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELS 292 PR P V +NCAA+PES+ ESELFGH KGAFTGA +R GKFE A GTLFLDE+GE+S Sbjct: 248 PRNRRPFVQINCAAIPESLLESELFGHEKGAFTGAHVSRPGKFEQAHEGTLFLDEVGEIS 307 Query: 293 LALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFP 352 A+Q KLLRVLQ ++RVG + + VDVR++AATNR+L E + +FR DL++RL+V P Sbjct: 308 PAVQVKLLRVLQERVVERVGGTKTIPVDVRIIAATNRNLEEAIRKNQFREDLYYRLNVVP 367 Query: 353 LSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIH 412 + +PPLR+R +D+ LL +F + G S + +S A + L + +PGNVRELE+ + Sbjct: 368 IYLPPLRQRKEDIPLLVNHFLGRFNQENGRS-MTISPEAISALIEHDWPGNVRELENTME 426 Query: 413 RAVVLARATRSGDEVI-------LEAQHFAFPEVTLPTPEVAAVPVVKQ------NLREA 459 R VV+ +A + P + L EA Sbjct: 427 RLVVMTQADSIDITDVRRTLALFPSTLPHRREVEEKPASRDSGKENGSSLKGESLLLPEA 486 Query: 460 TEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 +R I L + A +L L + G+ Sbjct: 487 VSELERAKILDVLDRTGWIKTRAAALLGITPRQLGYRMMKYGI 529 >UniRef50_A6TCX4 Anaerobic nitric oxide reductase transcription regulator norR n=84 Tax=Gammaproteobacteria RepID=NORR_KLEP7 Length = 516 Score = 605 bits (1562), Expect = e-172, Method: Composition-based stats. Identities = 404/506 (79%), Positives = 439/506 (86%), Gaps = 3/506 (0%) Query: 1 MSFSVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLA 60 MSFSVD LA IAI+LQ IGH DRF RLITTLRQ+L CDASALLRY++ QF+PLAIDGLA Sbjct: 1 MSFSVDELARIAIDLQSDIGHTDRFSRLITTLRQILGCDASALLRYEAHQFVPLAIDGLA 60 Query: 61 KDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFA 120 +DVLGRRFALEGHPRLEAIARAGDVVRFPADS+LPDPYDGLIPG ESLKVHACVGLPLFA Sbjct: 61 QDVLGRRFALEGHPRLEAIARAGDVVRFPADSDLPDPYDGLIPGHESLKVHACVGLPLFA 120 Query: 121 GQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFE 180 GQ LIGALTLDGM D+FD FSDEELRLIAAL AGAL+NALLI +LE+QN+LP A + Sbjct: 121 GQTLIGALTLDGMDADRFDSFSDEELRLIAALVAGALNNALLIARLEAQNVLPAQAVNYP 180 Query: 181 AVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLV 240 ++ ++IGLS M QLKKEI+IVAASDLNVLISGETGTGKELVAKA+H+ SPRA NPLV Sbjct: 181 LPERQEIIGLSGPMLQLKKEIDIVAASDLNVLISGETGTGKELVAKAVHQGSPRAANPLV 240 Query: 241 YLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLL 300 YLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLL Sbjct: 241 YLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLL 300 Query: 301 RVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRE 360 RVLQYGDIQRVGDDR LRVDVRVLAATNRDLR+EV+ GRFRADL+HRLSVFPLSVPPLRE Sbjct: 301 RVLQYGDIQRVGDDRSLRVDVRVLAATNRDLRQEVVEGRFRADLYHRLSVFPLSVPPLRE 360 Query: 361 RGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARA 420 R DV+LLAGYFCEQCRLR GL+RV+L+ ARN LQ +S+PGNVRELEHAIHRAVVLARA Sbjct: 361 RESDVVLLAGYFCEQCRLRMGLARVILAEAARNRLQQWSWPGNVRELEHAIHRAVVLARA 420 Query: 421 TRSGDEVILEAQHFAFPEVTL---PTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHH 477 T++GDEV+LE QHF F AA NLREAT++FQRE I +AL N Sbjct: 421 TQAGDEVVLEPQHFQFAVAAPMLPTETAAAAPATGNINLREATDSFQREAISRALEANQG 480 Query: 478 NWAACARMLETDVANLHRLAKRLGLK 503 NWAA AR LE DVANLHRLAKRLGLK Sbjct: 481 NWAATARALELDVANLHRLAKRLGLK 506 >UniRef50_B8FJT8 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=B8FJT8_DESAA Length = 464 Score = 604 bits (1558), Expect = e-171, Method: Composition-based stats. Identities = 149/462 (32%), Positives = 232/462 (50%), Gaps = 10/462 (2%) Query: 42 ALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGL 101 LL D + + L+ A +G + D +P DG+ Sbjct: 10 ILLVDDDPGVLATLTEVLSDAGYRTHTATDGAEAVAE-LDKQFFDVVVTDLNMP-GMDGM 67 Query: 102 IPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNAL 161 + K + G I +++ ++ FD + + ++S A+ Sbjct: 68 GVLKHLQKHSQDTQCLVLTGFGSIRN-SVEAIKMGAFDYITK---PVKFDELLHSVSTAI 123 Query: 162 LIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGK 221 ++LE +N + + + +G SP + ++ + IE VA +D VLI+GE+GTGK Sbjct: 124 KFKRLERENTILKKQLK-KKYRFENFVGDSPQIQRVFELIEKVADTDSTVLITGESGTGK 182 Query: 222 ELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNG 281 EL+A+AIH SPR +P+V +NC A+PE + ESELFGH KGAFTGA R G+FE+A+ G Sbjct: 183 ELIARAIHYNSPRRDDPMVIINCGAIPEELLESELFGHEKGAFTGAHKTRIGRFEVANGG 242 Query: 282 TLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFR 341 T+FLDEIG++S LQ KLLRV+Q +R+G R + VD+R+LAATN+DL E V FR Sbjct: 243 TIFLDEIGDMSPNLQVKLLRVIQEQAFERIGSTRTMHVDIRILAATNKDLMEAVEKKEFR 302 Query: 342 ADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFP 401 DL++RL+V P+ VPPLR+R D+ LL +F + + +S A N L + +P Sbjct: 303 EDLYYRLNVIPIEVPPLRDRKSDIPLLIDFFINKLAAEKERPVKRISQAAMNALMGHHWP 362 Query: 402 GNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATE 461 GNVRELE+ + R ++L+ E + + +P A E Sbjct: 363 GNVRELENVVERVLILSSGDTIDKEDLPATI---LGLDSKEPEAGLKLPSGGIRFDHAVE 419 Query: 462 AFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 +++ I QAL + + A++L + L KR ++ Sbjct: 420 EYEKNLIVQALEEANWVKTQAAKLLHINRTTLVEKMKRKNIR 461 >UniRef50_C8QWL5 Transcriptional regulator, NifA, Fis Family n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QWL5_9DELT Length = 539 Score = 603 bits (1556), Expect = e-171, Method: Composition-based stats. Identities = 164/506 (32%), Positives = 258/506 (50%), Gaps = 18/506 (3%) Query: 5 VDVLANIAIELQRGIGHQDRFQRLITTLRQV--LECDASALLRYDSRQFIPLAIDGLAKD 62 + L I EL + +++ L + L A ++ + Q G+ + Sbjct: 33 LACLYEITRELASSADLRVCLAKILAILSRQKGLNNGAVTIINPLTGQIETEVAHGITVE 92 Query: 63 VLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFAGQ 122 + G + +G + P SE P D + + + + +P+ G Sbjct: 93 ARKKGTYRIGEGITGRVVASGAPIVVPRISEEPLFLDRTSARRSRGEELSFICVPIRRGP 152 Query: 123 NLIGALTLDG-MQPDQFDVFSDEELRLIAALAAGALSNALL----IEQLESQNMLPGDAT 177 + IGAL++D + + L +++ L A + L ++LE +N Sbjct: 153 DTIGALSVDREYREGEEFEQDLRFLTILSGLVAQTVKRVQLVNQEQQRLEQENSQLRREL 212 Query: 178 PFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVN 237 E + + ++ S M ++ + I VAAS+ VL+ GE+GTGK +VA+A+H S RA Sbjct: 213 -SEKYRVSSILSNSSRMQEVLEMIHRVAASNATVLLRGESGTGKSMVARAVHHNSKRAAG 271 Query: 238 PLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQA 297 P + +NC+ALPE++ ESELFGH +GAFTGA R G+FE+A+ GTLFLDEIGELS A+Q Sbjct: 272 PFITVNCSALPETLLESELFGHERGAFTGAHETRKGRFELAEGGTLFLDEIGELSTAVQV 331 Query: 298 KLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPP 357 KLL V+Q + QRVG R L+ DVR++ ATN+DL + V G FR DL++RL+VFP+ +PP Sbjct: 332 KLLSVVQDREFQRVGGSRPLKCDVRLITATNKDLEKAVAEGTFREDLYYRLNVFPIYLPP 391 Query: 358 LRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVL 417 LRER D++LLA +F E+ + +S A +LL Y +PGNVREL++ + RAV++ Sbjct: 392 LRERRTDILLLAEFFLEKFASENDKNIRRISTPAIDLLTQYHWPGNVRELQNCLERAVLI 451 Query: 418 ARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHH 477 + + V + A E+F+RE I AL + Sbjct: 452 CDEDTIKSYHLPPTL----------QSSDSLREVSPSSFTAAVESFERELIIDALKKTDG 501 Query: 478 NWAACARMLETDVANLHRLAKRLGLK 503 N A +LET + ++ K+ ++ Sbjct: 502 NQTRAAALLETSLRIINYKIKKYAIE 527 >UniRef50_P27713 Nif-specific regulatory protein n=3 Tax=Burkholderiales RepID=NIFA_HERSE Length = 542 Score = 601 bits (1551), Expect = e-170, Method: Composition-based stats. Identities = 161/530 (30%), Positives = 254/530 (47%), Gaps = 28/530 (5%) Query: 1 MSFSVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASAL-LRYDSRQFIPLAIDGL 59 ++ + + I+ L + + ++ L LE L L DS + ++ GL Sbjct: 10 VNLELVTIYEISKILGSSLDLSKTLREVLNVLSAHLETKRVLLSLMQDSGELQLVSAIGL 69 Query: 60 AKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQ-ESLKVHACVGLPL 118 + + G I + + ++ P P Q + +V + VG+P+ Sbjct: 70 SYEEFQSGRYRVGEGITGKIFQTETPIVVRDLAQEPLFLARTSPRQSQDGEVISFVGVPI 129 Query: 119 FAGQNLIGALTLDGMQPDQFDVFSDE--ELRLIAALAAGALSN----ALLIEQLESQNML 172 A + ++G L + E L ++A L + A +QL+ + Sbjct: 130 KAAREMLGVLCVFRDGQSPSRSVDHEVRLLTMVANLIGQTVRLYRSVAAERQQLQEEKRQ 189 Query: 173 PGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEAS 232 + K +IG+S M ++ ++ A S +L+ GE+GTGKE++A+AIH S Sbjct: 190 LSRQLQGK-YKLDNVIGISKAMQEVFAQVHQSAPSRSTMLLRGESGTGKEVIARAIHYLS 248 Query: 233 PRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELS 292 PR P + +NCAAL E++ ESELFGH KGAFTGA R G+FE+A GTLFLDEIGE+S Sbjct: 249 PRKDGPFIKVNCAALSETLLESELFGHEKGAFTGAQGERKGRFELAHGGTLFLDEIGEIS 308 Query: 293 LALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFP 352 A QAKLLRVLQ + +RVG R ++VDVR++ ATNRDL + V G FRADL++R++V Sbjct: 309 PAFQAKLLRVLQEREFERVGGSRSIKVDVRLVTATNRDLEKAVAKGEFRADLYYRINVVS 368 Query: 353 LSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIH 412 + +PPLRER +D+ L +F E+ R+ + V +S A ++ + +PGNVRELE+ + Sbjct: 369 IFIPPLRERREDIPYLVEHFLEKFRVENQRAMVAMSPQAMKVMMNCYWPGNVRELENCVE 428 Query: 413 RAVVLARATRSGDEV-----------ILEAQHFAFPEVTLPTPEVAAV--------PVVK 453 R + R + +L P V +P ++A Sbjct: 429 RTATMMRGDLITEVHFSCQQNKCLTKVLHEPGQQQPVVVVPLERISAPYGAIFAEWDGQG 488 Query: 454 QNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 Q A +RE + A+ Q A AR L + ++ ++ Sbjct: 489 QATGAAPPTSERERLIWAMEQCGWVQAKAARALNISPRQMGYALQKFNIE 538 >UniRef50_Q1NW39 Nif-specific regulatory protein n=2 Tax=Deltaproteobacteria RepID=Q1NW39_9DELT Length = 541 Score = 598 bits (1542), Expect = e-169, Method: Composition-based stats. Identities = 156/519 (30%), Positives = 241/519 (46%), Gaps = 20/519 (3%) Query: 3 FSVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLR--YDSRQFIPLAIDGLA 60 + L I+ + + + L + L + + L+ DS + +A GL+ Sbjct: 13 LELQALYQISQLIGSALDISKTLNETLGVLHETLRMERATLVLEECDSGRLTIVASYGLS 72 Query: 61 KDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQES-LKVHACVGLPLF 119 + R + I + P P + + +G+P+ Sbjct: 73 PAEIARGIYRPEEGVIGRIFASAYPFVVPDVHREPLFLNRTRARTNLPKGEISFIGVPVM 132 Query: 120 AGQNLIGALTLDGMQPDQFDVF-SDEELRLIAALAAGALSN----ALLIEQLESQNMLPG 174 +N +G L++D + + L ++A + L+ A + L +N Sbjct: 133 LAENPVGVLSVDRLFGPEISFEEDIRFLTVVATMIGQFLNLQRTFASSQQVLREENSQLR 192 Query: 175 DATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPR 234 + + +IG + ++ I VA S L+ GE+GTGKELVA+AIH+A PR Sbjct: 193 RKL-QDRFNRYNIIGQCKRIQEVYDYIAKVAPSRATALLLGESGTGKELVARAIHQAGPR 251 Query: 235 AVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLA 294 A P + LNCAALPE++ ESEL GH KGAFTGA+ + G+FE+AD GTLFLDEIGEL LA Sbjct: 252 AGEPFIKLNCAALPENLLESELLGHEKGAFTGAVGQKKGRFELADGGTLFLDEIGELPLA 311 Query: 295 LQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLS 354 LQAKLLRVLQ +R+G R + VDVR++AATNR L V G FRADL++RL+V P+ Sbjct: 312 LQAKLLRVLQERTFERLGGSRTIAVDVRIIAATNRSLEAGVEEGVFRADLYYRLNVVPVV 371 Query: 355 VPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRA 414 +PPLRER +D+ LL +F + RV +A L YS+PGNVREL++ + R Sbjct: 372 LPPLRERREDIPLLLDHFLRESNR-HNRRRVKFAAAVIRRLNEYSWPGNVRELQNLVERL 430 Query: 415 VVLARATRSGDEVILEAQHFAFP----------EVTLPTPEVAAVPVVKQNLREATEAFQ 464 V++ + + P + + + + Sbjct: 431 VIMVDGEVVNLDDLPAYLADPDPANRRCPRGFADQPAAVLPAPSWVDQGMAAGRSLWEME 490 Query: 465 RETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 +E + AL ++ AR L + ++ ++ Sbjct: 491 KEEVLAALRRHGWVQTRAARDLGITPRQMGYRIRKYAIE 529 >UniRef50_B3QSR6 Transcriptional regulator, NifA, Fis Family n=2 Tax=Bacteria RepID=B3QSR6_CHLT3 Length = 557 Score = 595 bits (1535), Expect = e-168, Method: Composition-based stats. Identities = 171/544 (31%), Positives = 269/544 (49%), Gaps = 53/544 (9%) Query: 2 SFSVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRY--DSRQFIPLAIDGL 59 + +LA I+ L + ++ + + + + + DS + + GL Sbjct: 15 PNELTLLAEISRALINEEDINKILRLVLLIMSEHMGMLRGVITIFNRDSGEIVIKESFGL 74 Query: 60 AKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHAC-VGLPL 118 + + R G + + G V P+ ++ P D ++ K C V +P+ Sbjct: 75 SPEEQARGRYKLGEGIIGQVVETGKPVVVPSIAKEPLFLDKTRSREKDEKNDLCFVCVPI 134 Query: 119 FAGQNLIGALTLDG-------------------MQPDQFDVFSDEELRLIAALAAGALSN 159 AGQ +IG L+ D + + + ++ L++ +AA Sbjct: 135 RAGQEVIGTLSADRKVSSKNPRVALTQTQGGKQTRGCGENGMFNSDVNLLSIIAAMISQA 194 Query: 160 ALLIEQLESQNMLP---------------------GDATPFEAVKQTQMIGLSPGMTQLK 198 L + +N+ + + +IG + M + Sbjct: 195 VRLRQVAHEENLYHWKSNLQISAPEGKSHNSDVFDNPNSIEVGEQPANIIGNAKSMRVVF 254 Query: 199 KEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFG 258 K I+ +A ++ VLI GE+G GKELVA AIH S RA +P + NCAALPES+ ESELFG Sbjct: 255 KMIDKIAPTNATVLILGESGVGKELVANAIHYKSQRAASPFIKFNCAALPESIVESELFG 314 Query: 259 HVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLR 318 H +GAFTGA + R G+FE+A+ GT+FLDE+GELSL++QAKLLR+LQ + +RVG ++ ++ Sbjct: 315 HERGAFTGASATRKGRFELANTGTIFLDEVGELSLSIQAKLLRILQEKEFERVGGNKTIK 374 Query: 319 VDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRL 378 DVR++AATNR+L EE+ G+FR DLF+RL++FP++VPPLRER D++LLA YF E+ Sbjct: 375 ADVRIIAATNRNLEEEIQEGKFREDLFYRLNIFPVTVPPLRERKSDILLLADYFVEKYNQ 434 Query: 379 RQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPE 438 G +S A ++L Y +PGNVRELE+ + RAV+L+ + Sbjct: 435 MNGKGVRRISTTAIDMLMRYHWPGNVRELENCVERAVILSDDGVIHGYHLPP-------- 486 Query: 439 VTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAK 498 TL T E + P L++ +A + E I +AL N + A L + K Sbjct: 487 -TLQTAESSGTPCA-GPLQQRLDALEYELIVEALKNTKGNMSKAAMELGLTDRVMGLRVK 544 Query: 499 RLGL 502 + + Sbjct: 545 KFDI 548 >UniRef50_B6WRE4 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WRE4_9DELT Length = 521 Score = 595 bits (1535), Expect = e-168, Method: Composition-based stats. Identities = 162/508 (31%), Positives = 246/508 (48%), Gaps = 8/508 (1%) Query: 3 FSVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLR--YDSRQFIPLAIDGLA 60 + +L +++ + + ++ + Q L + + + GL Sbjct: 6 SELRLLFDLSQVIDHSRDISHSLEATLSLMAQHLHMMRGMITLVSPHTGEIRIEVAHGLN 65 Query: 61 KDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFA 120 R G + ++G + S P + A + +P+ Sbjct: 66 PAEQRRGHYALGEGVTGRVIQSGQPMVVSNVSASPIFLNRTRSRDLQKDTIAFICVPIKF 125 Query: 121 GQNLIGALTLDGMQPDQFDVFSDEELRLIAA----LAAGALSNALLIEQLESQNMLPGDA 176 ++GAL++D + D + DE + I A AA A N + + + Sbjct: 126 EDEVLGALSVDRVFADAVTLEEDERILTIIASMIAHAARARQNVMDERVAAIEENMRLRN 185 Query: 177 TPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAV 236 ++ +G S M + ++I VA S VL+ GE+GTGKEL A AIH A R+ Sbjct: 186 ALSAPLRPHGFVGNSDAMRLVYEQISQVAPSSTTVLLYGESGTGKELAAHAIHSAGKRSK 245 Query: 237 NPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQ 296 P + LNCAALPE++ ESELFGH KGAFTGA R G+FE+AD GTLFLDE+GELSL Q Sbjct: 246 GPFISLNCAALPENLIESELFGHEKGAFTGASGIRKGRFELADGGTLFLDEVGELSLLTQ 305 Query: 297 AKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVP 356 AKLLRVLQ +R+G L VDVR++ ATNRDL V G FR DL++RL+VFP+ +P Sbjct: 306 AKLLRVLQERCFERLGGTESLSVDVRIITATNRDLARMVEEGTFRRDLYYRLNVFPIHMP 365 Query: 357 PLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVV 416 PLRER +D+ LA YF ++ G S + +S ++LQ Y++PGN+RELE+ + RAV+ Sbjct: 366 PLRERQNDIQPLAAYFVDKYAAANGRSGIRISLAVMDMLQRYTWPGNIRELENVMERAVL 425 Query: 417 L-ARATRSGDEVILEAQHFAFPEVTLPTPEVAAVP-VVKQNLREATEAFQRETIRQALAQ 474 L + + + H + P L++ + +R I ALA+ Sbjct: 426 LVGQDGLILPQHLPRELHSTHCPFGPAAHKGPVEPYAASGTLQDRLDELERACITDALAR 485 Query: 475 NHHNWAACARMLETDVANLHRLAKRLGL 502 + + A+ L + K+ G+ Sbjct: 486 HKGHMGHAAQALGLTERVMALRMKKHGI 513 >UniRef50_C8W392 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W392_DESAS Length = 459 Score = 593 bits (1529), Expect = e-168, Method: Composition-based stats. Identities = 151/461 (32%), Positives = 238/461 (51%), Gaps = 6/461 (1%) Query: 42 ALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGL 101 L+ D + D L + A L I D LPD DG+ Sbjct: 4 VLIVDDEEGVCEMLKDVLEDEGFEITLAYNAKDAL-KIMETEFPDTVLLDIRLPD-ADGI 61 Query: 102 IPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNAL 161 + ++ V + L + + M+ D + L A+ ++ Sbjct: 62 EVMDKLKQMGIEVPVILMTAFGTTE-IAIQAMKQGAHDYLNK---PLNLDELVLAVQKSI 117 Query: 162 LIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGK 221 +++L S+ + + E IG S M + K I V SD+ VLI GE+GTGK Sbjct: 118 KMQRLVSEVAILREELDQETDSVDSFIGQSRHMQDVFKTIGKVVDSDITVLIQGESGTGK 177 Query: 222 ELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNG 281 E+VA+ IH S R+ P + +NCA +PE + ESELFGH KG+FTGA+S ++GKFE+A NG Sbjct: 178 EVVARTIHSNSRRSSRPFIKINCATIPEQLMESELFGHEKGSFTGAVSQKAGKFEIAHNG 237 Query: 282 TLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFR 341 +FLDEIGEL L QAKLLRVLQ + +RVG + + VDVR+LAATNR+L + V G+FR Sbjct: 238 IVFLDEIGELPLHTQAKLLRVLQEKEFERVGGTKSIEVDVRILAATNRNLEDMVQEGKFR 297 Query: 342 ADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFP 401 DL++RL+V + +PPLRER +D+ LL YF ++ + + +S A + Y++P Sbjct: 298 EDLYYRLNVVNVKLPPLRERKEDISLLINYFVKKFARKYNKNISGISQEAMIFAEKYAWP 357 Query: 402 GNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATE 461 GNVRE+++ +AVV+AR + + + + +++ K++L++ Sbjct: 358 GNVREIKNVCEQAVVMARNSVLMLDDMPLIGNGNGFLEFKNNAKISLDTNDKRSLKDIVA 417 Query: 462 AFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 +++ I ++L +N+ N A+ L + +L+ K L Sbjct: 418 EVEKQVILKSLNENNWNRQNTAKALGLNRRSLYAKMKEYDL 458 >UniRef50_B0SC18 Transcriptional regulator n=7 Tax=Bacteria RepID=B0SC18_LEPBA Length = 705 Score = 591 bits (1525), Expect = e-167, Method: Composition-based stats. Identities = 156/532 (29%), Positives = 272/532 (51%), Gaps = 35/532 (6%) Query: 6 DVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQ--FIPLAIDGLAKDV 63 L I+ + + + F ++ T+ + L + +++ ++ + +A GL+ + Sbjct: 174 ATLIEISKVVSSTLDQNEVFDSIMVTMEKSLRLEKGSIVLFNKEEALLRIVAASGLSPEE 233 Query: 64 LGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVH---ACVGLPLFA 120 + + G + +G+ + + + PD + + + + P+ + Sbjct: 234 IEKGTYQPGEGITGKVYESGEPIIIESVASHPDFLNRVGYLSHFKHDPHNVSLLCAPILS 293 Query: 121 GQNLIGALTLDGMQPDQFDVFS-DEELRLIAALAAGALSNALLIEQ----LESQNMLPGD 175 Q +G + +Q D+ S + L+++A++ + ++ L+E+ + +N+ Sbjct: 294 EQTTLGVVNAFIVQNKHTDLKSFLDFLQVVASIISQSIKIQNLVEEAKKEISRENIQLKR 353 Query: 176 ATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRA 235 + K +IG + M ++ ++I++VA S +VLI+GE+GTGKE++A AIH S R+ Sbjct: 354 ELKNK-YKFGSLIGKAASMEKMFEKIQLVADSRASVLITGESGTGKEMIANAIHYNSSRS 412 Query: 236 VNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLAL 295 NP V +NCAA+PE++ ESELFGH KG+FTGA++++ GKFE+AD GT+FLDEIGE+ L L Sbjct: 413 ENPFVKINCAAIPENLLESELFGHKKGSFTGAVTDKKGKFELADTGTIFLDEIGEMDLNL 472 Query: 296 QAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSV 355 Q+KLLRVLQ +I+ +G + +VDVR++AATN +L + V +FRADLF+RL+V ++ Sbjct: 473 QSKLLRVLQEREIEAIGSTKAKKVDVRIIAATNAELEQLVAEKKFRADLFYRLNVVKINT 532 Query: 356 PPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAV 415 PPLR+R +D+ LL +F E+ S +S A LL Y +PGNVRELE+ I RAV Sbjct: 533 PPLRDRVEDIPLLMNHFLEKYTKDNNKSIKGISREASRLLLKYRWPGNVRELENVIERAV 592 Query: 416 VLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATE-------------- 461 VLA+ +E + + V + E + Sbjct: 593 VLAQDEILNEEDFSDILSNMEEMPDNTVEVSHSNHVESVSGAEPLDLGSGRLTSGQLDGL 652 Query: 462 ----------AFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 + I+ A+ + + A+ L + L + K L ++ Sbjct: 653 DGRAMEIVVSEVESRLIQYAMKKFRYTKTRVAKFLGINRNTLDKKIKELNIE 704 Score = 80.1 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 28/180 (15%), Positives = 63/180 (35%), Gaps = 8/180 (4%) Query: 4 SVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAI--DGLAK 61 + + +A + + ++ Q+ ++ +L+ D +Q + A+ G+ + Sbjct: 8 PIQSIHEVATAMNSTQDPDGLLELILDRCIQICAVESGSLMLIDEKQSVLDAVTSRGMNQ 67 Query: 62 DVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFAG 121 +L G A G S+ PD Q ++ + + P+ Sbjct: 68 QLLRETKLKIGQGITGMAASTGKAKLVNDVSKDPDYI------QVKEEIKSELVAPMIVE 121 Query: 122 QNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEA 181 ++IG ++LD + + F E + ++A A N I LE + + Sbjct: 122 DDIIGVISLDSNRLNAFTPEMLEIVSVLANQAGQIFKNLQTIRSLEQRTKIQATLIEISK 181 >UniRef50_B5ER80 Transcriptional regulator, NifA, Fis Family n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5ER80_ACIF5 Length = 545 Score = 591 bits (1524), Expect = e-167, Method: Composition-based stats. Identities = 160/536 (29%), Positives = 249/536 (46%), Gaps = 42/536 (7%) Query: 4 SVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFI-PLAIDGLAKD 62 + + ++ L + + ++ TL L S ++ + + + +A GL+ Sbjct: 12 ELTTIYEVSKVLSSSMDLEHTLNDVLKTLESHLHISPSMIVLRMNEEIVGVIAATGLSVA 71 Query: 63 VLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFAGQ 122 + R G + I RAG + P S+ P + S ++HA VG+P+ G Sbjct: 72 EIERGRYRLGEGMIGKIMRAGMPIVIPDVSQEPAFLHRAFEPEISQRLHAFVGVPIKVGY 131 Query: 123 NLIGALTLDG--MQPDQFDVFSDEELRLIAALAAGALSN----ALLIEQLESQNMLPGDA 176 IG L + L++IA L ++ + +L + Sbjct: 132 ECIGVLAIYRSERHKGVSFRSDVRLLQMIANLVGQTVNLHQGISAERNRLLQEKHRLQKE 191 Query: 177 TPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAV 236 + +IG S M + ++ A VL+ GE+GTGKE++A+AIH SPR Sbjct: 192 L-QKRYSIKNVIGNSRAMQAVFADVHQAAPGKATVLLRGESGTGKEVIARAIHYLSPRRD 250 Query: 237 NPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQ 296 V LNCAALPES+ ESELFGH +GAFTGA R G+FE+AD GTLFLDEIG++S A Q Sbjct: 251 KAFVSLNCAALPESILESELFGHERGAFTGATQERKGRFELADGGTLFLDEIGDISPAFQ 310 Query: 297 AKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVP 356 AKLLRVLQ + +RVG + RV+VR++AATNR+L E V G FRADL++R++V + +P Sbjct: 311 AKLLRVLQEREFERVGGTQTRRVNVRIIAATNRNLEEAVSKGEFRADLYYRINVVSIFLP 370 Query: 357 PLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVV 416 PLRER +D+ L +F + + L+ A + +PGNVRELE+ + R Sbjct: 371 PLRERREDIPALIEHFLARYNAENQRK-LTLTPEALQTMVSCYWPGNVRELENCVERTAT 429 Query: 417 LARATRSGDEVIL-----------------------------EAQHFAFPEVTLPTPEVA 447 + R + + A P+V + + Sbjct: 430 MMRGDIIRNLDVPCQRNQCLSMALRPLEGSHPIVTMKLSSGMSVPPHAAPDVEGQVTDAS 489 Query: 448 AVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 + +L + +R+ + QA+ + A AR+L T L + G++ Sbjct: 490 GAGDGEGSLPLS----ERDRLIQAMDRCGWVQAKAARLLGTTTRKLGYALNKHGIE 541 >UniRef50_A7K2J6 Anaerobic nitric oxide reductase transcription regulator NorR n=4 Tax=Gammaproteobacteria RepID=A7K2J6_VIBSE Length = 510 Score = 589 bits (1520), Expect = e-167, Method: Composition-based stats. Identities = 304/510 (59%), Positives = 370/510 (72%), Gaps = 7/510 (1%) Query: 1 MSFSVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLA 60 M+ + I +L + Q RF L+TT+R++L+CDASALL Y+ + F PLAI+GLA Sbjct: 1 MTSLIAQWLYITQDLNSALTRQARFDTLLTTIREILKCDASALLLYEDQHFKPLAINGLA 60 Query: 61 KDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESL-KVHACVGLPLF 119 K+VLGRRF++ HPRLEAIARAGD+VRFP++S+LPDPYDGLIP + VH+C+GLPL Sbjct: 61 KEVLGRRFSINQHPRLEAIARAGDIVRFPSNSDLPDPYDGLIPNHDDKLHVHSCIGLPLL 120 Query: 120 AGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPF 179 LIGA+T+D P+QFD ++ELR ++ALAAG L ALL+EQLE+Q LP + Sbjct: 121 IDDQLIGAITIDAFDPNQFDGLLNQELRFVSALAAGGLHTALLLEQLETQASLPRGSYTE 180 Query: 180 EAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPL 239 + ++IG S GM L+++I+ VA ++L+VLI GETG GKELVA AIH S RA N L Sbjct: 181 KRTLSNEIIGKSAGMKALQEQIDAVADTELSVLIMGETGVGKELVANAIHHRSHRANNTL 240 Query: 240 VYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKL 299 VYLNCAALPESVAESELFGH+KGAFTGAISNR GKFE AD GTLFLDE+GELSL LQAKL Sbjct: 241 VYLNCAALPESVAESELFGHIKGAFTGAISNRKGKFEQADGGTLFLDEVGELSLELQAKL 300 Query: 300 LRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLR 359 LR LQYGDIQRVGDDR +RV+ R++AATNR L EEV AGRFRADL+HRLSVFPL VPPLR Sbjct: 301 LRALQYGDIQRVGDDRHIRVNTRIVAATNRVLHEEVKAGRFRADLYHRLSVFPLHVPPLR 360 Query: 360 ERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLAR 419 ER DDV+LLAG+F EQ R + GL+ V LS L+ YS+PGNVRELEH I RA VLA+ Sbjct: 361 EREDDVVLLAGFFAEQLRSKLGLNSVRLSPTLVQALKDYSWPGNVRELEHVIKRAGVLAK 420 Query: 420 ATRSGDEVILEAQHFAFPEV-TLPTPEVAAVPV-----VKQNLREATEAFQRETIRQALA 473 A ++ L Q F PT E + +P L++AT+ FQ+ I +AL Sbjct: 421 ARTQSLDIELVEQDFDIKASNNQPTTEESGIPSSSFELSDAGLKQATDTFQKAMIIKALE 480 Query: 474 QNHHNWAACARMLETDVANLHRLAKRLGLK 503 QN NWAA AR LE D NLHRLAKRLG+K Sbjct: 481 QNQGNWAATARQLELDNGNLHRLAKRLGIK 510 >UniRef50_A4J616 Two component, sigma54 specific, transcriptional regulator, Fis family n=10 Tax=Bacteria RepID=A4J616_DESRM Length = 454 Score = 588 bits (1516), Expect = e-166, Method: Composition-based stats. Identities = 148/462 (32%), Positives = 238/462 (51%), Gaps = 15/462 (3%) Query: 42 ALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGL 101 L+ D GL ++ + G L+ I R D ++P+ DGL Sbjct: 7 ILVIDDEEHMCWALEKGLMQEGYQVFTSTRGKHGLD-IIRKETPSLVILDLKMPE-MDGL 64 Query: 102 IPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNAL 161 ++ + + + + I ++ M+ D + + AL Sbjct: 65 EVLVKAKDLMPKLPIIMITAHGTIDT-AIEAMKLGATDYITK---PFDLDELKMVIRQAL 120 Query: 162 LIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGK 221 ++ L+ + + Q++G S + + IE VA S+ VL++GE+GTGK Sbjct: 121 MVNHLQEEVTFLRSELNKK---YGQIVGNSQAIHDVCGLIEKVADSNATVLVTGESGTGK 177 Query: 222 ELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNG 281 E+ A +IH+ S R P V +NCAALPES+ ESELFGH KGAFTGA++ + G+FE+A+ G Sbjct: 178 EITALSIHQLSSRRDKPFVPINCAALPESLLESELFGHEKGAFTGAVARKLGRFELANQG 237 Query: 282 TLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFR 341 TLFLDEI E+ L++Q KLLRVLQ + +RVG +++DVRV+AATNRD E + G FR Sbjct: 238 TLFLDEITEMPLSMQVKLLRVLQEKEFERVGGTDSIKIDVRVIAATNRDPMECIRKGTFR 297 Query: 342 ADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFP 401 DLF+RL+V P+ +PPLRER +D+ LLA +F ++ +S A LL Y +P Sbjct: 298 EDLFYRLNVLPIHLPPLRERTEDIPLLAMHFIKKFNPS---QEQRMSPEAMGLLISYEWP 354 Query: 402 GNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATE 461 GN+REL++ I R+++LA+ + + + + + + + + Sbjct: 355 GNIRELQNVIERSIILAQGNEIKPHHLPKEIQ---KLDEVKNETTHGLIINFPDDGISFD 411 Query: 462 AFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 ++E I +AL +++ N A++L + L A++ LK Sbjct: 412 EVEKELILKALEKSNGNQTRAAQLLGITRSALLYRAQKYRLK 453 >UniRef50_Q2LXW8 Nif-specific regulatory protein with sigma 54 interaction domain n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LXW8_SYNAS Length = 513 Score = 587 bits (1514), Expect = e-166, Method: Composition-based stats. Identities = 167/502 (33%), Positives = 252/502 (50%), Gaps = 16/502 (3%) Query: 4 SVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSR--QFIPLAIDGLAK 61 + L IA L + +D+ +R++ + Q + + D + G+ Sbjct: 8 ELAALHAIARTLAQPGELRDQLERVLQEMNQRVGMQRGMISLLDRESGEVWLDVAHGVDI 67 Query: 62 DVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQ-ESLKVHACVGLPLFA 120 + + G +A+ G + + D + + A + +P+ Sbjct: 68 QGMEVSYQP-GEGITGKVAQTGRPMAVANLGQETHFLDRTGARRFLNRSELAFLCVPIIY 126 Query: 121 GQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFE 180 ++G L+ D V + + + + ++ ++ I LE +N Sbjct: 127 DNRVVGVLSAD---KAARQVEDLDRELAMLSSISELIAKSVHIRALEEENRRLRHMLGRS 183 Query: 181 AVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLV 240 V +++IG S M ++ I VA S+ VLI+GETGTGKELVA+AIH+ S R PL+ Sbjct: 184 TVPDSEIIGHSRVMQEVFGLIAQVADSNTTVLINGETGTGKELVARAIHDRSSRCKGPLI 243 Query: 241 YLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLL 300 +NCAA+P+++ ESELFGH KGAFTGA+ R G+FE A GT+FLDE+GELS A QAKLL Sbjct: 244 QVNCAAMPDTLIESELFGHEKGAFTGALHARRGRFEEAHGGTIFLDEVGELSAAAQAKLL 303 Query: 301 RVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRE 360 RV+Q Q +G R + VDVR++AATNR+L E+V G FRADL++RL+VFP+ +PPLRE Sbjct: 304 RVIQEKKFQPLGASRVVSVDVRIIAATNRNLEEDVAVGHFRADLYYRLNVFPIYLPPLRE 363 Query: 361 RGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARA 420 RG D+ILLA YF + G S +S +S+PGNVRELE+ I RAV+LA Sbjct: 364 RGSDIILLADYFVLKYNKIMGKSVKRISNAVLEAFLSHSWPGNVRELENCIERAVLLATG 423 Query: 421 TRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWA 480 + + E E+ +R I AL ++H N + Sbjct: 424 DSIETLHLPPSLQIRSREGEKKES---------GKFNAMIESQERAMIVDALKESHGNQS 474 Query: 481 ACARMLETDVANLHRLAKRLGL 502 AR+L T + ++ G+ Sbjct: 475 QAARILGTTKRIIQYKIQKFGI 496 >UniRef50_A4J443 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Peptococcaceae RepID=A4J443_DESRM Length = 455 Score = 587 bits (1514), Expect = e-166, Method: Composition-based stats. Identities = 153/464 (32%), Positives = 231/464 (49%), Gaps = 17/464 (3%) Query: 42 ALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGL 101 L+ D D L ++ A G + + + D +P+ DG Sbjct: 6 VLVVDDEESVRQFLYDVLTEEKYQVATAANGLQCQDKLMQF-KPDVLITDIRMPE-KDGF 63 Query: 102 IPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVF-SDEELRLIAALAAGALSNA 160 ++ + + L + M+ FD +L L A++ + Sbjct: 64 GLLEQIKSAGLNIPVILMTAFGTTEV-AIKAMKLGAFDYIVKPFDLDEFLDLIQRAVAQS 122 Query: 161 LLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTG 220 + A + +IG SP M + K+I VA S+ VLI GE+GTG Sbjct: 123 DTVA-------TFPQAQEPASSTGINIIGNSPSMRNVYKDIGRVADSNATVLIQGESGTG 175 Query: 221 KELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADN 280 KELVA+AIH S R NP + +NCA LP+S+ ESELFG+ KGAFTGA S + G+FE+A Sbjct: 176 KELVARAIHYNSSRRNNPFIKVNCANLPDSLLESELFGYEKGAFTGASSLKVGRFELAHE 235 Query: 281 GTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRF 340 GT+F DEIGE+SLA QAKLLR +Q + RVG + ++V+VR+LAATNR L++ V G F Sbjct: 236 GTIFFDEIGEISLATQAKLLRAIQEKEFDRVGGTKTIKVNVRILAATNRKLKQSVREGEF 295 Query: 341 RADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSF 400 R DLF RL+V + +PPLR+R +D+ LL +F + S A LL Y + Sbjct: 296 REDLFFRLNVVNIEIPPLRDRKEDIPLLIAHFLAKYNKEFNKEIKGFSKEAIKLLIGYDW 355 Query: 401 PGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREAT 460 PGNVRELE+ + R++++AR E I P + +L++ Sbjct: 356 PGNVRELENVVERSIIMARGAIIVPEDI------QLGATVSQQPTELEILDENLSLKQII 409 Query: 461 EAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLKD 504 +R+ I +AL +N+ A++L+ + +L+ K LG+++ Sbjct: 410 SDVERKVILKALEENNWCRTTVAKVLKINRRSLYAKMKELGIEE 453 >UniRef50_Q3AR86 DNA-binding protein Fis / transcriptional regulator, Fis family n=11 Tax=Chlorobiaceae RepID=Q3AR86_CHLCH Length = 549 Score = 586 bits (1512), Expect = e-166, Method: Composition-based stats. Identities = 171/542 (31%), Positives = 271/542 (50%), Gaps = 53/542 (9%) Query: 4 SVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDS--RQFIPLAIDGLAK 61 S+ +LA ++ + + ++ + + + + + + + GL + Sbjct: 11 SISLLAEVSRTITHEEDINKVLRLVLFIMSENMHMQRGMITILNRSTGEIVINESFGLTE 70 Query: 62 DVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHAC-VGLPLFA 120 + R G + + + G V P+ + P D ++ K C + +P+ A Sbjct: 71 EERERGRYHIGEGVIGHVVKTGKAVIVPSIQDEPLFLDRTGSRAQAKKEELCFICIPIKA 130 Query: 121 GQNLIGALTLDGM------------------QPDQFD--VFSDEELRLIAALAAGALSNA 160 G +IG L+ D + ++ D F ++L +IAA+ + A+ Sbjct: 131 GSEIIGTLSADRHVEPVTADEHRRKTRQTDDRDERIDKLQFYVDQLSIIAAMISQAVRLK 190 Query: 161 LLIEQL--------------------ESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKE 200 L + S++ P + +IG + M L Sbjct: 191 QLAYEAGSKNVQDLSNLPPFAASIPPRSEDRQVNAIPPPSPDRPANIIGNTKPMVSLYSM 250 Query: 201 IEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHV 260 I+ +A + L+ GE+G GKELVA AIH S RA P + NCAALPE++ ESELFGH Sbjct: 251 IDKIAKTSATTLVLGESGVGKELVASAIHFKSRRAEKPFIKFNCAALPENIVESELFGHE 310 Query: 261 KGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVD 320 KGAFTGA++ R G+FEMA+NGT+FLDE+GELSL++QAKLLR+LQ + +RVG + ++VD Sbjct: 311 KGAFTGALATRHGRFEMANNGTIFLDEVGELSLSVQAKLLRILQEKEFERVGGSKTIKVD 370 Query: 321 VRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQ 380 VRV+AATNR+L E + G+FR DLF+RL++FP++VPPLRER D++LLA YF E+ Sbjct: 371 VRVIAATNRNLEELIRQGQFREDLFYRLNIFPITVPPLRERKTDILLLADYFVEKYNKAN 430 Query: 381 GLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVT 440 +S A ++L Y +PGNVREL++ I RAV+L+ + T Sbjct: 431 QKGVRRISTTAIDMLMRYHWPGNVRELQNCIERAVILSEDNVIHGYHLPP---------T 481 Query: 441 LPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRL 500 L T E + P +L++ +A ++E I +AL + N + A L + K+ Sbjct: 482 LQTAESSGTP-YTGSLQQKLDAIEKEMIIEALKRTQGNMSRAAMQLGLSERIMGLRIKKF 540 Query: 501 GL 502 + Sbjct: 541 NI 542 >UniRef50_Q3A356 Two component, sigma54 specific, transcriptional regulator, Fis family n=11 Tax=Desulfuromonadales RepID=Q3A356_PELCD Length = 471 Score = 586 bits (1511), Expect = e-166, Method: Composition-based stats. Identities = 155/461 (33%), Positives = 233/461 (50%), Gaps = 7/461 (1%) Query: 42 ALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGL 101 L+ D L A G LE I D LP G+ Sbjct: 18 ILVIEDEAANREAIALLLGNAGYQVTTAETGEKALE-ILSKTPFEVILTDLFLP-GVSGI 75 Query: 102 IPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNAL 161 + + + L G+ + ++ M+ FD + L ++ A+ Sbjct: 76 EILKRVKEQWPFTNVILITGKGSAES-AVEAMKEGAFDYITK---PLHFEKLQVIIAKAV 131 Query: 162 LIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGK 221 +L ++N+ + + +IG S M + +E V +D +LI GE+GTGK Sbjct: 132 EKSRLVAENLYLRQQLRGK-YRFDNIIGNSLPMQYVFSRMEKVLNTDSTILILGESGTGK 190 Query: 222 ELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNG 281 ELVAKAIH R P V +NC A+P + ESELFGHV+GAFTGA+++++GKF+ A G Sbjct: 191 ELVAKAIHYNGHRREKPFVAINCGAIPAELLESELFGHVRGAFTGAVADKTGKFQQAHQG 250 Query: 282 TLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFR 341 T+FLDEIG + L LQ KLLRVLQ ++++VG + +++DVRV++ATN +L EEV GRFR Sbjct: 251 TIFLDEIGTMPLHLQMKLLRVLQEQEVEKVGSSKKIKLDVRVISATNCNLEEEVEQGRFR 310 Query: 342 ADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFP 401 ADL++RL+V P+++PPLRER +D+ LLA YF ++ + ++ GA N L++Y +P Sbjct: 311 ADLYYRLNVIPIALPPLRERREDIALLARYFLQKTCTEMNQPLISITPGAMNCLENYHWP 370 Query: 402 GNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATE 461 GNVRELE+ I R V L + G + + E P + ++ E Sbjct: 371 GNVRELENVIERTVTLTDSIAIGKSDLPANISGSCCEDEDPQISCPRLTESGMDMPEVIA 430 Query: 462 AFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 +R I+ A+ + A A +L L KRLG+ Sbjct: 431 GIERCLIKSAMGLSGGVKARAASLLNIKRTTLVEKIKRLGI 471 >UniRef50_C9RBQ4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Ammonifex degensii KC4 RepID=C9RBQ4_AMMDK Length = 470 Score = 583 bits (1503), Expect = e-165, Method: Composition-based stats. Identities = 169/467 (36%), Positives = 234/467 (50%), Gaps = 13/467 (2%) Query: 38 CDASALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDP 97 L+ D + D L + A G LE + D +P+ Sbjct: 1 MAKLVLVVDDEKSVCEALKDVLEESGYSVVTATSGREALEKV-NLIRPHAVLLDIRMPE- 58 Query: 98 YDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGAL 157 DG+ Q + H V + L + T++ M+ F+ + L Sbjct: 59 MDGIKVLQALREKHPGVPVILMTAYSDTQT-TINAMRYGAFEYIVK---PINLDELLSTL 114 Query: 158 SNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGET 217 A + + L A + +IG SP M ++ K I +A SD+ VLI GE+ Sbjct: 115 EKATTVTE-----PLVTVGKGEIAPRPGTLIGCSPAMQEVYKTIGRIADSDVTVLIQGES 169 Query: 218 GTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEM 277 GTGKELVA+AIH SPR P V ++C A+PE++ ESELFGH KGAFTGA + + GKFE+ Sbjct: 170 GTGKELVAEAIHYNSPRQGKPFVKIDCTAIPENLLESELFGHEKGAFTGAHTRKLGKFEL 229 Query: 278 ADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLA 337 AD GT+FLDEIG++S ALQAKLLR LQ +RVG RVDVR++AATN+DL E V + Sbjct: 230 ADGGTVFLDEIGDISPALQAKLLRFLQEKAFERVGGTETRRVDVRIIAATNKDLEERVKS 289 Query: 338 GRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQH 397 G FR DL++RL+V + +PPLRER +D++LL YF + G L+ ++L Sbjct: 290 GLFREDLYYRLNVVEIKLPPLRERKEDIMLLVDYFVSLSNRKFGKQVTGLTRSVADILLQ 349 Query: 398 YSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLR 457 Y++PGNVREL + RAV++AR E + E A T A L+ Sbjct: 350 YNWPGNVRELRNVCERAVLMARGNVITPESLPEYLLRAVRGRT--EAWHPAEDRGVLPLK 407 Query: 458 EATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLKD 504 E +R I +AL + N A AR L L+ K LG+ D Sbjct: 408 EMVAEMERSAILRALEEYRGNKTAVARALGMSRTTLYAKMKELGIAD 454 >UniRef50_A0LFR7 Transcriptional regulator, NifA subfamily, Fis Family n=7 Tax=Deltaproteobacteria RepID=A0LFR7_SYNFM Length = 508 Score = 583 bits (1503), Expect = e-165, Method: Composition-based stats. Identities = 173/502 (34%), Positives = 259/502 (51%), Gaps = 16/502 (3%) Query: 4 SVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYD--SRQFIPLAIDGLAK 61 + L IA + R +D+ Q+ + L L + + D + + G+ Sbjct: 9 ELRTLHEIARVVSRSAELKDQLQQTLDILSSRLGMERGMVSVLDLQTGEAWLDVARGVDV 68 Query: 62 DVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQE-SLKVHACVGLPLFA 120 + G G +A++G + + D + + + A + +P+F Sbjct: 69 ER-GTIRYRPGEGITGKVAQSGRPMGIANLGDEALFLDRTGARRSLNREELAFLCVPIFY 127 Query: 121 GQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFE 180 +G L+ D + D+ + E I + A L + +E +N Sbjct: 128 QGRSVGVLSADKLARRVEDLDKEVE---ILSAVAELLGKVVHFRAVEEENSRLRRMLAEA 184 Query: 181 AVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLV 240 T +IG S + ++ + I+ VA ++ VLISGETGTGKELVA+AIH+ S RA PLV Sbjct: 185 RRPTTNIIGRSKVIQEVLRAIDQVADTNTTVLISGETGTGKELVARAIHDNSRRAKGPLV 244 Query: 241 YLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLL 300 +NCAA+P+++ ESELFGH KGAFTGA++ R G+FE A GT+FLDE+GELS QAKLL Sbjct: 245 QVNCAAMPDTLLESELFGHEKGAFTGAVTRRRGRFEEAQGGTIFLDEVGELSPIAQAKLL 304 Query: 301 RVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRE 360 RVLQ + Q +G R ++VDVRV+ A+N+DL +EV G FR+DL++RL+VFP+ +PPLRE Sbjct: 305 RVLQEREFQPLGSSRTVKVDVRVITASNKDLEKEVALGTFRSDLYYRLNVFPIFLPPLRE 364 Query: 361 RGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARA 420 RG D++LLA YF + ++ A ++L Y +PGNVRELE+ I RAV+LA Sbjct: 365 RGPDILLLADYFVLKYARELDKDVKRITTSAIDMLMCYHWPGNVRELENCIERAVLLAGG 424 Query: 421 TRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWA 480 + TL V V + L AF+R+ I AL N + Sbjct: 425 NAVDSWHLPP---------TLQMKPVGMQNVSRGKLEALVSAFERDLITDALKDVRGNQS 475 Query: 481 ACARMLETDVANLHRLAKRLGL 502 AR+L T + ++ G+ Sbjct: 476 QAARLLGTTKRIVQYKVEKYGI 497 >UniRef50_B5YH04 Transcriptional regulator n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YH04_THEYD Length = 511 Score = 582 bits (1501), Expect = e-164, Method: Composition-based stats. Identities = 149/499 (29%), Positives = 244/499 (48%), Gaps = 16/499 (3%) Query: 2 SFSVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDS--RQFIPLAIDGL 59 + + L ++ L ++ L + L+ ++ +D + +A GL Sbjct: 6 NIELKALFEVSRVLTSSFDLAQNLYSVLEILSKELDMRRGSIFIFDKKTEEISIVAAYGL 65 Query: 60 AKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLF 119 ++ + R G + + G + P + P + + + + +P+ Sbjct: 66 TQEEMSRGRYRIGEGIVGKVIETGLPMFIPDIEKEPQFLNKTGSRPNKKGI-SFLCVPIR 124 Query: 120 AGQNLIGALTLDGMQPDQFDVFSDEE--LRLIAALAAGALSNALLIEQLESQNMLPGDAT 177 ++G ++ D + ++ D+ L ++A+L + + +E +N++ Sbjct: 125 IEDEILGVISADRIYAEEQGDVDDDLRVLSVVASLIGQFIKLWESYKIMEDENIILRAQL 184 Query: 178 PFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVN 237 + ++G SP + K + VA++D VL+ GE+GTGKEL+AK IH S RA Sbjct: 185 K-DRYNFPNLVGQSPSFQAVLKTVMKVASTDATVLLFGESGTGKELIAKTIHFQSKRAKG 243 Query: 238 PLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQA 297 P V +NCAA+PE++ E+ELFG KGAFTGA+ R GKFE A+ GT+FLDEI EL L+LQ Sbjct: 244 PFVAINCAAIPENLLEAELFGSEKGAFTGAVK-RIGKFEQANGGTIFLDEIAELPLSLQP 302 Query: 298 KLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPP 357 KLLRVLQ ++ +G + +RVDVR+++ATN+DL EE+ G FR DLF RL+V P+ +PP Sbjct: 303 KLLRVLQERTVEPLGSSKTIRVDVRLISATNKDLSEEIRKGNFREDLFWRLNVIPIYIPP 362 Query: 358 LRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVL 417 LRER +D+ LL Y+ + S + A +L Y +PGNVREL + I R VV+ Sbjct: 363 LRERKEDIPLLVEYYLKSFCNIYRKSV-SIDEEALKVLVSYDWPGNVRELANTIERLVVM 421 Query: 418 ARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHH 477 +++ + + F + L E +R I L + + Sbjct: 422 TESSKIKVYDLPDTVRGVFKLK--------PYSLGDLKLPTEVEELERIRIMDTLPKFNF 473 Query: 478 NWAACARMLETDVANLHRL 496 N A+ L L+ Sbjct: 474 NIRKTAQALGLTERQLNYR 492 >UniRef50_B8IZX3 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 RepID=B8IZX3_DESDA Length = 522 Score = 581 bits (1499), Expect = e-164, Method: Composition-based stats. Identities = 162/502 (32%), Positives = 246/502 (49%), Gaps = 12/502 (2%) Query: 4 SVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLR--YDSRQFIPLAIDGLAK 61 + +L +A + + + + + L A+ + + A GL Sbjct: 18 QLSLLYELAQIMNFTTDLTQALDKALKLMARQLHMMRGAITLISPHTGEIRTEAGYGLKP 77 Query: 62 DVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFAG 121 L R + G + +G + SE P + S + + + +P+ Sbjct: 78 AELRRGRYVRGEGITGRVIESGRPMYISNVSEEPLFLNRTRSRDLSKEGISFICVPIRLN 137 Query: 122 QNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEA 181 ++GAL++D + D + E+ + + + L +A L + D Sbjct: 138 DQVVGALSVDHLL---VDEATLEDEMRLLTIVSTLLGHAAL------ETQGRMDEETSSP 188 Query: 182 VKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVY 241 ++ +G S GM ++ +I VA S V + GE+GTGKEL A+AIH S RA P + Sbjct: 189 LRPRGFVGNSEGMQKVYAQIAQVAPSVTTVFLQGESGTGKELAARAIHSGSARAGKPFIS 248 Query: 242 LNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLR 301 LNCAALPE++ ESELFGH +GAFTGA + R G+FE+A GTLFLDE+GELSL QAKLLR Sbjct: 249 LNCAALPENLIESELFGHERGAFTGASATRKGRFELAHGGTLFLDEVGELSLMTQAKLLR 308 Query: 302 VLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRER 361 VLQ +R+G VDVR + ATNR+L V FR DLF+RL+VFP+ +PPLR R Sbjct: 309 VLQERAFERLGGMETHYVDVRFITATNRNLEHMVAKESFRRDLFYRLNVFPIYLPPLRGR 368 Query: 362 GDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAV-VLARA 420 +D++ LA +F + G V LS ++LQ Y++PGN+RELE+ + RAV +L R Sbjct: 369 PEDILPLANHFIRKFAQANGRENVRLSLSVMDMLQRYAWPGNIRELENVMERAVLLLGRE 428 Query: 421 TRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWA 480 + + A H A AA P +L++ + +R +I +AL + Sbjct: 429 GLVLPQHLPPALHGAHCAGISGESACAARPGFSGSLQDQLDELERASIVEALEFSQGQMG 488 Query: 481 ACARMLETDVANLHRLAKRLGL 502 A L + K+ + Sbjct: 489 KAAASLGLTERIMALRMKKYEI 510 >UniRef50_Q2LSK2 Sigma-54 dependent transcriptional regulator n=4 Tax=Bacteria RepID=Q2LSK2_SYNAS Length = 472 Score = 581 bits (1499), Expect = e-164, Method: Composition-based stats. Identities = 149/461 (32%), Positives = 233/461 (50%), Gaps = 9/461 (1%) Query: 42 ALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGL 101 L+ D + L + + G ++A D ++P+ DGL Sbjct: 17 ILIAEDDDLNRSNLTELLNAEGYEIKAVDNGRKAMDAFVED-KYELVITDLKMPNG-DGL 74 Query: 102 IPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNAL 161 + ++ + + G + + ++ M+ FD S + L ++ AL Sbjct: 75 ELLKFVKDMNPDNIVIMMTGYGTVDS-AVEAMKLGAFDYISK---PMRNDLVTLTVNRAL 130 Query: 162 LIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGK 221 L+ +N+ D E +M+G S M + IE VA SD V+I GE+GTGK Sbjct: 131 SYASLQEENVTLRDHLR-EQYDFGKMLGYSECMKTIFDTIEKVAKSDSTVIIYGESGTGK 189 Query: 222 ELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNG 281 ELVA+AIH S R PL+ +NC A+PE + ESELFGH KGAFTGAI NR G+FE+A G Sbjct: 190 ELVARAIHFNSNRNNFPLIPVNCGAIPEDLLESELFGHEKGAFTGAIRNRLGRFELAQGG 249 Query: 282 TLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFR 341 ++FLDEIG++S ALQ K+LRV+Q +R+G + + DVR++AAT+++L V RFR Sbjct: 250 SIFLDEIGDMSPALQVKVLRVIQEKQFERIGGVKTINADVRIIAATHQNLELAVTEKRFR 309 Query: 342 ADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFP 401 DLF+R++V P+ +P LRERG D+ +LA +F ++ + + A + HY +P Sbjct: 310 EDLFYRINVIPIHLPALRERGADIAILANHFLQKFAQSKKKEVTRFTPEAIACMLHYPWP 369 Query: 402 GNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATE 461 GNVRELE+ I VV+ E + E + + +P + + Sbjct: 370 GNVRELENLIEMLVVMKEDGEIKLEDLPSKIRQFKKET--QSFKEYQIPEEGIDFNDVVY 427 Query: 462 AFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 F++ + +ALA+ + A++L + L KRL + Sbjct: 428 QFEKNILLKALAKTNGVKNRAAKLLNLNRTTLVEKLKRLNI 468 >UniRef50_Q4K714 Sigma-54 dependent DNA-binding response regulator n=6 Tax=cellular organisms RepID=Q4K714_PSEF5 Length = 465 Score = 581 bits (1498), Expect = e-164, Method: Composition-based stats. Identities = 148/466 (31%), Positives = 242/466 (51%), Gaps = 7/466 (1%) Query: 38 CDASALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDP 97 + L+ D + L L+++ + A G L + D+ +D +P Sbjct: 1 MTHNLLVVDDEPKLCDLLSSALSQNGIQVFTAGNGLHAL-KVLEQEDIDLVISDWRMP-G 58 Query: 98 YDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGAL 157 DG E + + + + + + + + M+ +D + + Sbjct: 59 MDGPQLLGEIKQRYPQLPVIVMTAYSTVKN-AVQSMRNGAYDYIAK---PFDIDELDITV 114 Query: 158 SNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGET 217 S AL + N E + ++G SP ++ + ++ V S+ +L++GE+ Sbjct: 115 SKALQFRDILKDNQRMRAEL-AEHQQIDSLVGDSPAFRRVLQAVDSVRESNATILLTGES 173 Query: 218 GTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEM 277 GTGKE+VA+AIH+ RA P V +NCAA+PE + ESE+FGH KGAFTGA+++R G+F+ Sbjct: 174 GTGKEMVARAIHKHGNRADKPFVAVNCAAIPEGLLESEMFGHRKGAFTGAVADRVGRFQQ 233 Query: 278 ADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLA 337 AD GTLFLDE+G++ LALQAK+LR LQ I+ VGD R +VDVRV+AATN++L E V Sbjct: 234 ADKGTLFLDEVGDMPLALQAKILRALQERVIEPVGDPRERKVDVRVIAATNKNLLEAVAN 293 Query: 338 GRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQH 397 FR DL++RL+VFP+ +P LRER +D+ LLA +F G S A + Sbjct: 294 KEFREDLYYRLNVFPIPLPALRERVEDIALLARHFAHSLGATAGKRISGFSPEALQAMAS 353 Query: 398 YSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLR 457 Y++PGN+REL++ + RA ++A ++ + + T + ++ P V +L Sbjct: 354 YAWPGNIRELQNCVERATIVATGQVIEEKDLPGYLFGPQAQGTESSAAISVGPQVPSDLE 413 Query: 458 EATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 A ++ I AL Q++ AA A+++ + K+LG++ Sbjct: 414 AALAEVEKAYILAALQQSNGVQAAAAQLIGISERSFWYRLKKLGIQ 459 >UniRef50_D0MEW0 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MEW0_RHOM4 Length = 495 Score = 580 bits (1496), Expect = e-164, Method: Composition-based stats. Identities = 168/505 (33%), Positives = 257/505 (50%), Gaps = 23/505 (4%) Query: 4 SVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLR---YDSRQFIPLAIDGLA 60 S+D L IA + + ++++ + LE + +L F + Sbjct: 9 SLDALVEIAQTINTLRDPEAVLEKVLEIAMETLEAERGFILLKAPQHPEGFAIRSQRNFT 68 Query: 61 KDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFA 120 LG + + + R G+ V + D G ++ + +PL Sbjct: 69 DQQLGELVRIST-SVVHEVLRRGEPVLVYEAQQ--DERYGKAESIVLQRIQSIACVPLRI 125 Query: 121 GQNLIGALTLDGM-QPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPF 179 + LIGA+ LD + Q +F + L A AA A+ NA L + L +N Sbjct: 126 KERLIGAIYLDSLSQRGRFTRDNLPFLEAFAHQAAIAIENAQLYQALREENRRLRSEI-Q 184 Query: 180 EAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPL 239 +++G SP M ++ + V +D VLI GE+GTGKEL+A+AIH S R P Sbjct: 185 RLHGFDEIVGQSPAMREVFDTMARVLDTDATVLIEGESGTGKELIARAIHYNSERKDKPF 244 Query: 240 VYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKL 299 V + C +LP+ + ESELFG+ KGAFTGA+S++ G FE+AD GT+FLDE+G+LS +Q L Sbjct: 245 VVVFCGSLPDELLESELFGYKKGAFTGALSDKKGLFEVADGGTVFLDEVGDLSPRMQTAL 304 Query: 300 LRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLR 359 LRVLQ G+I+RVGD + +VDVRV++ATN+ LRE V G+FR DL++RL+ ++VPPLR Sbjct: 305 LRVLQEGEIRRVGDTQVRKVDVRVISATNKPLRELVQQGKFREDLYYRLNTIQITVPPLR 364 Query: 360 ERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLAR 419 R D+ LLA +F ++ +++ + A LL+ Y +PGNVRELE+ I RAVVLAR Sbjct: 365 HRRGDIPLLAHHFLDKYAVKKRAHIKGFTPEALELLERYHWPGNVRELENTIERAVVLAR 424 Query: 420 ATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNW 479 E + P+ P +P + +R + + L ++ N Sbjct: 425 GELITPEDL------RLPDTDGADPFEPDLP---------LKEVERRVVLRTLKRHGGNI 469 Query: 480 AACARMLETDVANLHRLAKRLGLKD 504 + AR+L LH K +++ Sbjct: 470 SETARVLGVSRRWLHYKLKEWDVQN 494 >UniRef50_C4XRA9 Transcriptional regulatory protein ZraR n=9 Tax=Proteobacteria RepID=C4XRA9_DESMR Length = 462 Score = 580 bits (1496), Expect = e-164, Method: Composition-based stats. Identities = 165/467 (35%), Positives = 242/467 (51%), Gaps = 10/467 (2%) Query: 38 CDASALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDP 97 A L+ D + + L G A +G +E + R+ D + Sbjct: 1 MRAELLVVDDDAGHLSMLRTVLTGWGYGVTGATDGAEAVE-LVRSRPFDAVLLDVRMA-G 58 Query: 98 YDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGAL 157 G+ + + V + + + + + ++ +D + L + + Sbjct: 59 MGGMEALSLIKEYNPAVPVLIMTAYSSVET-AVSALKSGAYDYLTK---PLDLDVMRLTV 114 Query: 158 SNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGET 217 AL +L +N V ++IG SP M +L I +VA ++ VL++GE+ Sbjct: 115 ERALDHLRLARENENLRQKLGPGVVGP-EIIGKSPAMRELFSMIAMVAPTEATVLVTGES 173 Query: 218 GTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEM 277 GTGKELVAKA+H SPRA P+V +NCAAL E++ ESELFGH KGAFTGA R G+F Sbjct: 174 GTGKELVAKALHAGSPRAGGPMVAVNCAALNETLLESELFGHEKGAFTGAERRREGRFMA 233 Query: 278 ADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLA 337 AD G++FLDEIGE++ ++QAKLLRV+Q +IQRVG DR + VDVR+LAATNRDL++EV A Sbjct: 234 ADKGSIFLDEIGEIAPSIQAKLLRVIQEREIQRVGGDRPVGVDVRILAATNRDLKKEVEA 293 Query: 338 GRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQH 397 GRFR DL++RL+V +SVPPLRERG D+ LLA +F + + + A + L Sbjct: 294 GRFREDLYYRLNVVAISVPPLRERGQDIPLLAQHFLTRFAEKNRKRIKGFTPAAMDHLLR 353 Query: 398 YSFPGNVRELEHAIHRAVVLARATRSGDEVILEA---QHFAFPEVTLPTPEVAAVPVVKQ 454 +PGNVRELE+A+ RAV+L+ + + + + A + Sbjct: 354 CPWPGNVRELENAVERAVILSVGEYVTERELPLSAMREAGGNGAPGGAGGGAPAPGDMAG 413 Query: 455 NLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLG 501 A + +RE I L N + AR+L A LH+ K+ G Sbjct: 414 LAGMALDDVEREVILATLRDTGGNKSEAARVLGITRATLHKKLKKYG 460 >UniRef50_C0GSN4 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GSN4_9DELT Length = 519 Score = 579 bits (1493), Expect = e-164, Method: Composition-based stats. Identities = 154/510 (30%), Positives = 250/510 (49%), Gaps = 22/510 (4%) Query: 4 SVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDAS--ALLRYDSRQFIPLAIDGLAK 61 ++VL I+ +++ + + ++ L L + + DS + A GL Sbjct: 10 KLNVLHEISKVIEKALDLDKALEAILKILADSLSMKRGAFSFIEEDSGLLVISASHGLTS 69 Query: 62 DVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFAG 121 R I G P ++ P D + + G+P+ Sbjct: 70 QEKNRGVYRMDEGVTGRIFSTGKPFIVPDIAKEPLFLDKTGSRSMEKERISFAGVPVTLQ 129 Query: 122 QNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQ-------LESQNMLPG 174 +G LT+D + D+ +E+++L++ +AA L Q L +N Sbjct: 130 GTTVGVLTVDRLFDQ--DISLEEDIQLLSIVAAMVAQFVSLNRQVKDREENLRRENQNLK 187 Query: 175 DATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPR 234 + ++G S M Q+++ +E VA + VL+ GE+GTGK L+A IHE S R Sbjct: 188 TRLSSSFQRFF-IVGKSSSMLQVRQMMEKVAPTRATVLLLGESGTGKTLIAGIIHELSER 246 Query: 235 AVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLA 294 P + +NCA+LPE++ ESELFG+ KGAFTGA ++ G+FE A GT+FLDEIGE+ Sbjct: 247 GKFPFIKVNCASLPENLLESELFGYEKGAFTGAERSKPGRFEEAHRGTIFLDEIGEMPAG 306 Query: 295 LQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLS 354 LQAKLLR LQ + +R+G + RVDVRV+AATN++L +EV GRFR DL++RL+VFP+ Sbjct: 307 LQAKLLRFLQEREFERLGGVKTHRVDVRVIAATNKELDKEVQEGRFREDLYYRLNVFPIW 366 Query: 355 VPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRA 414 VP LRER +D+ L +F ++ G V LS + + L Y +PGN+RE+E+ + + Sbjct: 367 VPSLRERREDIPSLINHFLDKMAREYGRRLV-LSNSSLDYLVEYEWPGNIREMENLMEKL 425 Query: 415 VVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQ 474 +++ + + + +V V +Q + +++ I AL + Sbjct: 426 SIMSEGQIVALKDLPS---------DMQQEKVCPGKVQEQARDHSLLDMEKKEILSALQR 476 Query: 475 NHHNWAACARMLETDVANLHRLAKRLGLKD 504 N + AR L + K+ L++ Sbjct: 477 NSWIQSRAARELGLTQRQMGYRIKKFNLEE 506 >UniRef50_Q1D4K8 Sigma-54 dependent DNA-binding response regulator n=3 Tax=Myxococcus RepID=Q1D4K8_MYXXD Length = 471 Score = 577 bits (1487), Expect = e-163, Method: Composition-based stats. Identities = 152/459 (33%), Positives = 221/459 (48%), Gaps = 15/459 (3%) Query: 42 ALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGL 101 L+ D L ++ A G L I D +P DGL Sbjct: 6 ILVVDDEDNARRAIATILNEEGYEVAEAANGAEALARIGEF-SPAVVLTDVRMPQ-MDGL 63 Query: 102 IPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNAL 161 + + + + + + ++ M+ + L A L L Sbjct: 64 TLLKTAREQGSDATFVMMTAFASVET-AVEAMKSGADNFLLK---PLDADQVLVTLGKVL 119 Query: 162 LIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGK 221 L + D + +IG SP + + I A + VLI GE+GTGK Sbjct: 120 EKRSLRQEAEALRDQVRSRVRRFHDIIGESPQLQGIYDVIRRAAGTRATVLILGESGTGK 179 Query: 222 ELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNG 281 EL+A+A+H+ SPR P + ++CAAL E++ ESELFGH KG+FTGA++ + G+FE+AD G Sbjct: 180 ELIAQALHQESPRKDKPFIRVHCAALSENLLESELFGHEKGSFTGALARKEGRFELADGG 239 Query: 282 TLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFR 341 TLFLDEIGE+S A+Q KLLRVLQ + +RVG + L+VDVR++AAT+RDL EV AGRFR Sbjct: 240 TLFLDEIGEISPAVQVKLLRVLQQREFERVGGTQTLKVDVRIVAATHRDLVAEVKAGRFR 299 Query: 342 ADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFP 401 DL++RL+V +++PPLR+R DV L +F E+ G L+ G L + +P Sbjct: 300 EDLYYRLNVVSVTLPPLRDRKSDVPALVNHFLEKYSDSYGKQVRGLAPGTLQALLSHDWP 359 Query: 402 GNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATE 461 GN+RELE+AI RAVVLA+ + + P T + Sbjct: 360 GNIRELENAIERAVVLAQGQELSTDDLPPVLRGPRPHGTSTGALIPGA---------TLA 410 Query: 462 AFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRL 500 A +RE I + L + + A +L V + K Sbjct: 411 AIEREAILRTLEMVQGSTSRAAEVLGISVRKIQYRLKEY 449 >UniRef50_Q2LUG8 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=6 Tax=Bacteria RepID=Q2LUG8_SYNAS Length = 456 Score = 576 bits (1485), Expect = e-163, Method: Composition-based stats. Identities = 169/462 (36%), Positives = 238/462 (51%), Gaps = 12/462 (2%) Query: 42 ALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGL 101 L+ D + + D L K+ A G +++IA G D ++P DG+ Sbjct: 6 ILVVEDGQSQREMLRDFLLKEGHTVEEAASGEEAVQSIA-GGAFDLVLLDYKMP-GMDGM 63 Query: 102 IPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNAL 161 QE +++ + + I +D M+ D + L L Sbjct: 64 QVLQEVKRLNPETDVVIITAYGTIET-AVDAMKAGAVDYITK---PLEFDELLLLLDRVA 119 Query: 162 LIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGK 221 L +N + + V +I S M L VA+S VL+ GE+GTGK Sbjct: 120 ERRTLIRENEILRRQLKDQGVTTDAIIFTSQKMAALTSMAARVASSRATVLLQGESGTGK 179 Query: 222 ELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNG 281 EL+A+ IH+ SPR+ P++ +NC ALPES+ ESELFGH KGAFTGA S R G+FE AD G Sbjct: 180 ELLARLIHQLSPRSTRPIITVNCGALPESLIESELFGHEKGAFTGATSRRIGRFEEADGG 239 Query: 282 TLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFR 341 TLFLDEIGEL++ +Q KLLR LQ + QRVG + +R DVR+++ATNRDL V +FR Sbjct: 240 TLFLDEIGELTMPVQVKLLRFLQEREFQRVGGNTNIRADVRIISATNRDLETMVKEEKFR 299 Query: 342 ADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFP 401 DL++RL+V +S+PPLRER +D+ L +F E+ G +S+ AR+LL Y +P Sbjct: 300 EDLYYRLNVVVMSIPPLRERREDIPALIDHFLERFAAENGKKISGISSEARDLLMKYDYP 359 Query: 402 GNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATE 461 GNVRELE+ I RAVV+AR E + F E TL + LR A E Sbjct: 360 GNVRELENIIERAVVIARNEIIYMEDLP------FREDTLVATSGGVPEEGEGRLRGAIE 413 Query: 462 AFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 +++ I+ A+ + + A ML L K+ GLK Sbjct: 414 NLEKQMIQDAMEKAGDHQTRAAEMLGLSERMLRYKLKKYGLK 455 >UniRef50_C8WZC4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8WZC4_DESRD Length = 448 Score = 576 bits (1485), Expect = e-163, Method: Composition-based stats. Identities = 158/467 (33%), Positives = 223/467 (47%), Gaps = 20/467 (4%) Query: 36 LECDASALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELP 95 + LL D + + L K+ A +G L + G D +LP Sbjct: 1 MSTKKRILLIDDEPNTLKVLSAFLTKEGYEVGTAKDGRSGLNHLQEGGW-DMLITDLKLP 59 Query: 96 DPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAG 155 D GL ++ + + + I + + M+ F+ + + Sbjct: 60 D-ITGLDILEQVKATWPKLPVVMITAYGSI-SNAVQAMKLGAFNYLTK---PVDPDELLL 114 Query: 156 ALSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISG 215 + N QL +N + M+G S M +L IE VA + NVL++G Sbjct: 115 LVQNVFERSQLLEENQTMRRQLR-DRYSLGNMVGKSKAMQELFNLIEKVAQYEANVLVTG 173 Query: 216 ETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKF 275 ETGTGKELVA+ IH A P V ++CAA+PE++ ESELFGH +GAFTGA + G+ Sbjct: 174 ETGTGKELVARGIHYAGQEENLPFVPIDCAAVPETLLESELFGHSRGAFTGAAEQKKGQI 233 Query: 276 EMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEV 335 E+A GTLFLDEIGEL LALQ K LR LQ +I R+G+ R +VDVR++AATNRDL E+ Sbjct: 234 ELAHGGTLFLDEIGELPLALQKKFLRFLQEKEIVRLGETRRRKVDVRIIAATNRDLEAEI 293 Query: 336 LAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLL 395 AG++R DLF+RL+V + +PPLRER DD+ L +F + + G + ++ + Sbjct: 294 AAGQWREDLFYRLNVISIEIPPLRERRDDIPPLVNHFLAKYNAQNGKAIQGMTGEVMEVF 353 Query: 396 QHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQN 455 Y +PGNVRELE+ I RAVVL + E + P P V Sbjct: 354 MAYDWPGNVRELENVIERAVVLCMGDSIAMSCLPPK----LQERSAPAPSTDGVN----- 404 Query: 456 LREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 ++ I Q L + N +A AR L L K GL Sbjct: 405 ----LMEMEKRLIVQTLEKTEQNQSAAARELGISRKQLRTKMKHHGL 447 >UniRef50_Q06065 Acetoacetate metabolism regulatory protein atoC n=32 Tax=Proteobacteria RepID=ATOC_ECOLI Length = 461 Score = 575 bits (1483), Expect = e-162, Method: Composition-based stats. Identities = 154/461 (33%), Positives = 228/461 (49%), Gaps = 11/461 (2%) Query: 42 ALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGL 101 L+ D + A A G L + D +P+ DG+ Sbjct: 7 ILIVDDEDNVRRMLSTAFALQGFETHCANNGRTAL-HLFADIHPDVVLMDIRMPE-MDGI 64 Query: 102 IPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNAL 161 +E + L + ++ ++ FD + AL Sbjct: 65 KALKEMRSHETRTPVILMTAYAEVET-AVEALRCGAFDYVIK---PFDLDELNLIVQRAL 120 Query: 162 LIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGK 221 ++ ++ + A + + ++ SP M + K+ +A S +VLISGE+GTGK Sbjct: 121 QLQSMKKEIRHLHQALST-SWQWGHILTNSPAMMDICKDTAKIALSQASVLISGESGTGK 179 Query: 222 ELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNG 281 EL+A+AIH S RA P + +NCAALPES+ ESELFGH KGAFTGA + R G FE A+ G Sbjct: 180 ELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERANEG 239 Query: 282 TLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFR 341 TL LDEIGE+ L LQAKLLR+LQ + +R+G + ++VD+R++AATNRDL+ V G FR Sbjct: 240 TLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFR 299 Query: 342 ADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFP 401 DLF+RL+V L +PPLR+R +D+ LLA +F ++ + + A +LL +S+P Sbjct: 300 EDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWP 359 Query: 402 GNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATE 461 GN+REL + I RAVV+ E + EV PV ++NL+E + Sbjct: 360 GNIRELSNVIERAVVMNSGPIIFSEDLPPQIRQP----VCNAGEVKTAPVGERNLKEEIK 415 Query: 462 AFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 ++ I + L Q N A ML L + G+ Sbjct: 416 RVEKRIIMEVLEQQEGNRTRTALMLGISRRALMYKLQEYGI 456 >UniRef50_B8FEY3 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Deltaproteobacteria RepID=B8FEY3_DESAA Length = 460 Score = 573 bits (1478), Expect = e-162, Method: Composition-based stats. Identities = 152/464 (32%), Positives = 232/464 (50%), Gaps = 14/464 (3%) Query: 41 SALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDG 100 + L+ D + + PL L + A G + I DV D ++P DG Sbjct: 3 TILIVDDEKNYPPLLAAVLGDEGYETLTANSGLEAI-QILEGSDVDLVLTDMKMP-GMDG 60 Query: 101 LIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNA 160 + + + + + + + + M+ + + A Sbjct: 61 MELMERIKTRDPDLPVLMMTAYGTVD-MGMAAMEKGAYSYIWK---PFQNEQLILFVKQA 116 Query: 161 LLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTG 220 L + ++ +N L + + +IG SP M + I VA ++ VLI GE+GTG Sbjct: 117 LAMYRVVQENRLLKNEL-GDRYSFGNIIGKSPAMVNIFDTIVKVAPTNATVLIQGESGTG 175 Query: 221 KELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADN 280 KE+VAK+IH S R P V +NCAAL ES+ ESELFGH KGAFTGA + + G+FE+AD Sbjct: 176 KEMVAKSIHFNSHRKDAPWVAVNCAALAESILESELFGHEKGAFTGAAAMKKGRFELADG 235 Query: 281 GTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRF 340 GTLFLDEIGE+S +LQ KLLRVLQ +RVG + + VD+R++AATNRDL++EV F Sbjct: 236 GTLFLDEIGEISSSLQVKLLRVLQEKTFERVGGVKPIEVDIRLIAATNRDLKKEVENSAF 295 Query: 341 RADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRL--RQGLSRVVLSAGARNLLQHY 398 R DLF+RL+V P+ +PPLRER D+ LL +F ++ + L Q Y Sbjct: 296 REDLFYRLNVLPIQLPPLRERQKDIPLLVDHFLQKYASGPSGESRVRKVHPDVHRLFQEY 355 Query: 399 SFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLRE 458 ++PGNVRELE+ I RA++L + + ++ V L E Sbjct: 356 AWPGNVRELENVIERAIILCNSDAISVNDLPREL-----TRSVSNTLHMEGIPVDATLYE 410 Query: 459 ATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 ++ I++A+ + + + A++L + L++ K+ GL Sbjct: 411 TLSMVEQAMIKRAMLMSDNVQSHAAQILGIGKSGLNQKIKKFGL 454 >UniRef50_Q1D6H5 Sigma-54 dependent DNA-binding response regulator n=7 Tax=Myxococcales RepID=Q1D6H5_MYXXD Length = 474 Score = 573 bits (1478), Expect = e-162, Method: Composition-based stats. Identities = 154/474 (32%), Positives = 239/474 (50%), Gaps = 22/474 (4%) Query: 40 ASALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYD 99 A L+ D + L +D A G L + G D +P Sbjct: 2 AKVLVIDDEANLRKVLAAMLRRDGFDVTVAENGEQGLAEFHKNG-ADIVVTDLVMPK-VG 59 Query: 100 GLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDE-ELRLIAALAAGALS 158 G+ + V + + + + +D ++ FD + + ++++ A A Sbjct: 60 GMEVLGTIRAANPDVPVIIITAHGTVDS-AVDAIKAGAFDYITKPFDQAELSSVVAKAAK 118 Query: 159 NALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETG 218 N + + + +IG S + ++ K I+ VA + VLI+GE+G Sbjct: 119 T----------NESARRSVRPDVKARAAIIGDSSTIQEVYKIIDKVADTPSTVLITGESG 168 Query: 219 TGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMA 278 TGKEL+A A+H AS R P + +NCAA+P ++ ESELFG+ +GAFTGA++++ G+FE+A Sbjct: 169 TGKELIATALHGASSRRDKPFIKINCAAIPHTLLESELFGYERGAFTGAVTSKPGRFELA 228 Query: 279 DNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAG 338 D GTLFLDEIGE+ + +Q KLLR +Q G+ +RVG + RVDVR++AATNRDL+ E+ AG Sbjct: 229 DEGTLFLDEIGEIPVEMQVKLLRAIQEGEFERVGGIKTTRVDVRLVAATNRDLQAEIEAG 288 Query: 339 RFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHY 398 RFR DL++RL+V P+S+P LRER DV +LA +F E+ R ++ A LLQ Y Sbjct: 289 RFRKDLYYRLAVVPISLPALRERRSDVPMLARHFVEKYNRRLNKKIEGIADDAMALLQGY 348 Query: 399 SFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAV----PVVKQ 454 ++PGN+RELE+ I R ++ A + E A P + Sbjct: 349 AWPGNIRELENLIERVLLFADGPLITARDLPEPVRQGTGVQAGANLASAVASIDVPTGEV 408 Query: 455 NLREAT----EAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLKD 504 L++ +R+ I + L + N AR+L+ +L K GL+D Sbjct: 409 GLKDIVRMKAAELERDLIVKKLEETGGNVTRAARLLQISRKSLQTKMKEFGLRD 462 >UniRef50_Q21UU9 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Proteobacteria RepID=Q21UU9_RHOFD Length = 474 Score = 573 bits (1477), Expect = e-162, Method: Composition-based stats. Identities = 148/467 (31%), Positives = 228/467 (48%), Gaps = 8/467 (1%) Query: 38 CDASALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDP 97 A L+ D I + L D+ A G L+ + D +P Sbjct: 1 MSARILVVDDEEIVIRSCVRILNDDLYTVDSAPGGFEALKKVDETA-YDILILDVMMPK- 58 Query: 98 YDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGAL 157 DGL Q + H + + + G + I + M+ FD S + Sbjct: 59 MDGLEVLQHVKERHPEIDVIMMTGLSEIQT-AVKAMKLGAFDYLSK---PFDPDELKLVV 114 Query: 158 SNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGET 217 + AL QL +N + +IG SP M + I A ++ VLI+GE+ Sbjct: 115 NRALERRQLMQENRKLKTEV-SSKYRFENIIGSSPPMQAVFGLIAKCAPTNSTVLITGES 173 Query: 218 GTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEM 277 GTGKE++A+AIH S R P V ++C L E++ ESELFGH KG+FTGA++N+ G F++ Sbjct: 174 GTGKEMIARAIHYNSLRKDQPFVTVDCNTLSENLLESELFGHTKGSFTGAVANKRGMFDV 233 Query: 278 ADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLA 337 A+NGTLFLDE G + L+ QAKLLRV+Q + + VG + +VR++ ATN+DL+ V Sbjct: 234 ANNGTLFLDEFGNIPLSTQAKLLRVIQEREFRPVGTTTNQKTNVRLITATNKDLKAMVAE 293 Query: 338 GRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQH 397 G FR DL++R++VFP+ P LRER DD+ LA +F + G +S GA +LL + Sbjct: 294 GTFREDLYYRINVFPIHSPALRERRDDIPALAFHFLKIFCSELGKPVSEISEGAMSLLMN 353 Query: 398 YSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQH-FAFPEVTLPTPEVAAVPVVKQNL 456 Y +PGNVRELE+ + RAV+L+ + ++ +P + K Sbjct: 354 YGWPGNVRELENTMQRAVILSSDGIIRQAHLASIIDNSPRLDLDVPRTSDELKRIKKIAR 413 Query: 457 REATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 ++ E ++ +++ L +N N A N L K+ ++ Sbjct: 414 EKSVEEVEKLFVQETLKRNASNVTRSAEETGMQRTNFQALMKKYNIR 460 >UniRef50_C1SIC3 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SIC3_9BACT Length = 540 Score = 572 bits (1475), Expect = e-161, Method: Composition-based stats. Identities = 151/529 (28%), Positives = 257/529 (48%), Gaps = 31/529 (5%) Query: 4 SVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSR--QFIPLAIDGLAK 61 +++ + I++ L Q R + + L + +L +D + A GL Sbjct: 10 ALNTIYEISVILNSSNMIQHSLYRSLLQMSDTLSMERGLILLHDKDTNELFVEASIGLDN 69 Query: 62 DVLGRR--FALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLF 119 D + + + + G + P + P + L + + + +P+ Sbjct: 70 DEGPVKNMRYKADEGVVGKVFKYGIPILIPDVQKEPMFLNKLG-RNAKKEEISFIAVPIK 128 Query: 120 AGQNLIGALTLDGMQPDQFDVFSD-EELRLIAALAAGALSNAL----LIEQLESQNMLPG 174 G L +D + + + +D + L++IA L A L +E ++ + Sbjct: 129 HQNQTYGVLAVDKVVSKMYSITTDVDILKMIATLMASFLHKVQFFTSEMEAIQQEKSRIE 188 Query: 175 DA------TPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAI 228 + + + ++G M ++ ++++V ASD VLI GE+GTGKE+VAK I Sbjct: 189 EEKLKLIGEVTQKYQYEGLVGSGRLMRKVLDKVQMVTASDSAVLIRGESGTGKEVVAKTI 248 Query: 229 HEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEI 288 H S R P V +NCAA+P + ESELFG+ KGAFTGA + GKFE AD GT+FLDEI Sbjct: 249 HYNSNRRKKPFVAVNCAAIPGELIESELFGYSKGAFTGAAGEKKGKFEQADGGTIFLDEI 308 Query: 289 GELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRL 348 G++ + Q+KLLRVLQ ++++G + ++VDVR+LAATN++L V +G FR DL++RL Sbjct: 309 GDMPMEAQSKLLRVLQDKVVEKLGGTKPVQVDVRILAATNKNLEAAVQSGEFRLDLYYRL 368 Query: 349 SVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELE 408 +VF + +PPLR+R +D+ +A + + R + +S A L + ++PGN+RELE Sbjct: 369 NVFAIFLPPLRKRKEDIPEIAQHILKNLSKRYNKN-YTISPEAVTALMNCNYPGNIRELE 427 Query: 409 HAIHRAVVLARATRSGDEVI------LEAQHFAFPEVTLPTPE--VAAVPVVKQNLREAT 460 + + R+ A + I + HF +++ + + + EA Sbjct: 428 NCLERSAFTAGGGEIKTKHISCMRGEMCMSHFMEEQLSGSSTAITPQTGGIPDNDYSEAD 487 Query: 461 EAF------QRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 +RE + QAL + A ARML+ V ++ K+ +K Sbjct: 488 NELISGNMDERERVVQALEKAGWVQAKAARMLDMTVRQMNYRIKKFNIK 536 >UniRef50_A9G6P0 Sigma-54 dependent DNA-binding response regulator n=2 Tax=Myxococcales RepID=A9G6P0_SORC5 Length = 481 Score = 571 bits (1474), Expect = e-161, Method: Composition-based stats. Identities = 149/481 (30%), Positives = 241/481 (50%), Gaps = 15/481 (3%) Query: 35 VLECDASALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSEL 94 +L L+ D + L++D A +G L A + + D + Sbjct: 1 MLPEKKQILVVDDEANLRRVLSAQLSRDGYEVHTAEDGEEGL-AFLKEHHIDLVITDLRM 59 Query: 95 PDPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAA 154 P DG+ + +L+ + L + ++ ++ FD + + + Sbjct: 60 PK-VDGMDLLRAALRDDPSRPVVLLTAHGTVDN-AVEALKTGAFDYITKPFDQNEVRVVV 117 Query: 155 GALSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLIS 214 + ++ + + + +IG SP + +L +E VA + VLIS Sbjct: 118 KKALRTRDLASADATRDVSAAQPRGGSDRF-GIIGESPPIQELYAILERVADTPTTVLIS 176 Query: 215 GETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGK 274 GE+GTGKELVA+A+HE S R P + +NCAA+P+ + ESELFG+ +GAFTGA++++ G+ Sbjct: 177 GESGTGKELVARALHENSGRRDRPFIKVNCAAIPKDLMESELFGYERGAFTGAVASKPGR 236 Query: 275 FEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREE 334 FE+A GTLFLDEIGE+ +Q KLLRVLQ + +RVG + + VDVR++AATNRDL+ E Sbjct: 237 FELASGGTLFLDEIGEIPNEMQVKLLRVLQESEFERVGGIKTIHVDVRLVAATNRDLKRE 296 Query: 335 VLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNL 394 + AG FR DLF+RL+V P+++P LR+R D+ L +F + R S + A Sbjct: 297 IAAGTFREDLFYRLNVVPIALPALRDRRSDIPHLCAHFVAKFNARLKKSIESIEPEALER 356 Query: 395 LQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPE-----------VTLPT 443 L +++PGN+RELE+ + RA++ A R + + E + Sbjct: 357 LASHAWPGNIRELENVVERALLFADGARIRLDDLPEEIRGGATSAPGAALPLAAAAADTS 416 Query: 444 PEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 + +K+ ++ A +R+ I +AL Q H N AR+L+ L K L L+ Sbjct: 417 AAPSTPDGLKEQVKAAMSKLERDLIERALKQTHGNVTHAARLLKISRKGLQLKMKELNLR 476 Query: 504 D 504 + Sbjct: 477 E 477 >UniRef50_C7LX45 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LX45_DESBD Length = 529 Score = 570 bits (1471), Expect = e-161, Method: Composition-based stats. Identities = 159/514 (30%), Positives = 257/514 (50%), Gaps = 16/514 (3%) Query: 2 SFSVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYD--SRQFIPLAIDGL 59 S + VL I+ + + + + + ++ L + + + YD S + GL Sbjct: 7 STELRVLLAISKVIDQALDLESALESILKILSDTMSMRRATVTLYDPLSGRLAISTSYGL 66 Query: 60 AKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLF 119 + R I R P S P D + S + + VG+P+ Sbjct: 67 SALEKQRGVYRMDEGITGIIFRTAKPYVVPDISLEPLFLDKTGTRRISQERISFVGVPIL 126 Query: 120 AGQNLIGALTLDGMQPDQFDVF-SDEELRLIAALAAGALSNALLIEQ----LESQNMLPG 174 + IG + +D + Q + E L ++A L + LS +++ L+ +N Sbjct: 127 LHGSPIGVMNVDRVFTGQEQLDADTEFLTVVATLISQFLSLNEKVKKREAALKQENTSLK 186 Query: 175 DATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPR 234 E ++G S M ++++ + VA + VL+ GE+GTGK L+ + IHE S R Sbjct: 187 YQIARENHGPY-IVGKSQAMLEVEQYVAKVAITKATVLLLGESGTGKTLIGRIIHELSDR 245 Query: 235 AVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLA 294 +P + +NCAA+PE++ E+ELFG+ KGAFTGA S + G+FE A GT+FLDEIGEL L Sbjct: 246 KTHPFIKVNCAAIPENLLEAELFGYEKGAFTGANSTKPGRFEDAHLGTIFLDEIGELPLT 305 Query: 295 LQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLS 354 LQ+KLLRVLQ + +R+G ++ +VDVR+++ATNR+L V G FR DL++RL+VFP+ Sbjct: 306 LQSKLLRVLQEREFERIGSNKTRKVDVRIISATNRELEALVGHGLFREDLYYRLNVFPVH 365 Query: 355 VPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRA 414 VP +RER +D+ L +F ++ G S + L+ GA +LL Y +PGNVRELE+ + R Sbjct: 366 VPAVRERKEDIPRLLNHFQKEMEREYGRS-LTLTTGALDLLLAYDWPGNVRELENLVERL 424 Query: 415 VVLARATRSGDEV----ILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQ 470 V+L E+ + H P P P +++ + + +R + Sbjct: 425 VILTDDKPVEAELVRGFLTPETHRPGPARHAPEPPAHPE---QEDYCQPLKETERREVLA 481 Query: 471 ALAQNHHNWAACARMLETDVANLHRLAKRLGLKD 504 AL +N AR L + ++ L++ Sbjct: 482 ALKRNAWIQYKAARELNLTPRQMGYRVRKFNLEE 515 >UniRef50_A9A0V6 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Deltaproteobacteria RepID=A9A0V6_DESOH Length = 465 Score = 569 bits (1468), Expect = e-161, Method: Composition-based stats. Identities = 153/464 (32%), Positives = 236/464 (50%), Gaps = 12/464 (2%) Query: 42 ALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGL 101 L+ D + L ++ A G LE +A+ D ++P DGL Sbjct: 11 VLVVDDEENMRHMLAAMLTREGYQVETAANGAQALEMVAK-QPFDFILCDIKMPR-MDGL 68 Query: 102 IPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNAL 161 + + + + I ++ ++ +D S + AL A Sbjct: 69 AFLAHRTEHFPDATVIMMSAYGTIDT-AVEALKHGAYDYISK---PFKSDEVLLALKKAS 124 Query: 162 LIEQLESQNMLPGDATP--FEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGT 219 E+L+ +N+ ++I S M + I VAA D VL++GE+GT Sbjct: 125 ERERLKRENIALRQQIATLGRGYTFGKIIAKSKAMQAVTDLITKVAAHDTTVLVTGESGT 184 Query: 220 GKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMAD 279 GKELVA+++H SPRA N L+ +NC +PE++ ESELFGHVKGAFTGA N++G E+A Sbjct: 185 GKELVARSLHFNSPRAPNALIPVNCGGIPENLLESELFGHVKGAFTGADKNKTGLCEIAH 244 Query: 280 NGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGR 339 GTLFLDEIGEL +LQ KLLR+LQ +I+ VG +D+R++AAT R+L +V G Sbjct: 245 KGTLFLDEIGELPASLQVKLLRLLQDREIRPVGASATRTIDIRIVAATARNLEADVAEGV 304 Query: 340 FRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYS 399 FR DLF+RL+V + +PPLR+R +D+ LL F ++ + + L+ A + L ++ Sbjct: 305 FREDLFYRLNVLHIHLPPLRDRQEDIPLLIETFVQEFNKKLDKTITGLAPAALSRLLAHT 364 Query: 400 FPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREA 459 +PGNVRELE+ I RAVVLA + + F + P A +++ A Sbjct: 365 WPGNVRELENLIERAVVLAEGDTITPDDLPP----GFGTDSAGGPGDALAGFDGYSIKAA 420 Query: 460 TEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 + F++ I +ALA+ N +++LE +L K G++ Sbjct: 421 QKIFEKRLIEKALAKTGGNRTRTSKLLEISHPSLLAKMKEYGIE 464 >UniRef50_Q1PV55 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PV55_9BACT Length = 448 Score = 568 bits (1464), Expect = e-160, Method: Composition-based stats. Identities = 151/461 (32%), Positives = 237/461 (51%), Gaps = 16/461 (3%) Query: 42 ALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGL 101 L+ D + + L G +E I++ + D +P+ DG+ Sbjct: 4 ILVVDDDPALGEMCTELLKSKGYAADAVTNGADAIERISKDPEYAIVLTDFVMPE-MDGI 62 Query: 102 IPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNAL 161 + ++++ + + + + + ++ M+ D + R + L Sbjct: 63 QLLSKIKQINSAIDVIVMTSYGTVSS-AVEAMKHGASDYITKPFKR---DELVLVIEKIL 118 Query: 162 LIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGK 221 +++LE + E +IG SP + ++ I V+ ++ N+LI GETGTGK Sbjct: 119 QMQRLEGEVDRLRSEL-GEKYTFGNIIGESPKIKKIYDIISHVSGTEANILIQGETGTGK 177 Query: 222 ELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNG 281 ELVAKAIH S R + V ++C++L E++ ESELFGH KGAFTGA +R G+F AD+G Sbjct: 178 ELVAKAIHYNSARNNHRFVKVDCSSLTETLLESELFGHEKGAFTGATKDRVGRFRKADHG 237 Query: 282 TLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFR 341 T+FLDEIG +SLA+QAKLLRVLQ + + VG D ++VDVR++AATN DL V G FR Sbjct: 238 TIFLDEIGNISLAVQAKLLRVLQDSEFEAVGSDESIKVDVRIIAATNADLEGCVEKGLFR 297 Query: 342 ADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFP 401 +DLF+RL+V + +PPLRER +D+ LLA +F + + S N+L Y++P Sbjct: 298 SDLFYRLNVIRIFLPPLRERTEDIPLLAAHFLAIHNKKNRKTVEGFSRDTLNILTSYAWP 357 Query: 402 GNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATE 461 GN+RELE+ I RAV+L + R E + Q L + L+E E Sbjct: 358 GNIRELENVIERAVILCKKNRITPEDVPLYQEKMGTRPGL----------SGKPLQELLE 407 Query: 462 AFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 +R+ I L N + A++L+ A+L+ + + Sbjct: 408 QTERQIIINTLEANDADKEKTAKILKISRASLYNKLNKYKI 448 >UniRef50_Q5E3W8 Anaerobic nitric oxide reductase transcription regulator norR n=23 Tax=Gammaproteobacteria RepID=NORR_VIBF1 Length = 512 Score = 568 bits (1464), Expect = e-160, Method: Composition-based stats. Identities = 288/507 (56%), Positives = 368/507 (72%), Gaps = 8/507 (1%) Query: 6 DVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLAKDVLG 65 D IA++L G+ +DRF+RL++T+R L+CDASALL + ++ F PLA +GL DV+G Sbjct: 6 DEWVQIALDLTSGLSSKDRFERLLSTIRNALKCDASALLLFKNQYFSPLATNGLDGDVIG 65 Query: 66 RRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQE-SLKVHACVGLPLFAGQNL 124 RRFA+ HPRLEAIARAGD+VRFP+DS+LPDPYDGLI +E L+VH+C+GLPL + L Sbjct: 66 RRFAISQHPRLEAIARAGDIVRFPSDSDLPDPYDGLIANEERQLQVHSCIGLPLLVNERL 125 Query: 125 IGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQ 184 IGA+T+D P QFD F+++ELR+I+ALAA +L ALL+E+LE+Q+ + + FE Sbjct: 126 IGAVTIDAFDPTQFDSFTNKELRIISALAATSLHTALLMERLENQSGENSNNSSFERSPD 185 Query: 185 T--QMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYL 242 +MIG S M +L+ I VA ++L+VLI+GETG GKELVA A+H+ S RA LVYL Sbjct: 186 NHVEMIGESLAMQELQANINAVANTELSVLITGETGVGKELVASALHQRSTRAQQNLVYL 245 Query: 243 NCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRV 302 NCAALPESVAESELFGHVKGAFTGAISNR GKFE ADNGTLFLDEIGELSLALQAKLLRV Sbjct: 246 NCAALPESVAESELFGHVKGAFTGAISNRKGKFESADNGTLFLDEIGELSLALQAKLLRV 305 Query: 303 LQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERG 362 LQYGDIQR+GDD ++V+ R++AATN+ L +EV G FRADL+HRLSVFP+ VPPLR+RG Sbjct: 306 LQYGDIQRIGDDNHIKVNTRIIAATNKTLSDEVKNGDFRADLYHRLSVFPIFVPPLRDRG 365 Query: 363 DDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATR 422 +DV LL GYF E+ R++ + + ++ A LL YS+PGN+RELEH I RA VL+RA Sbjct: 366 NDVTLLVGYFAEKSRIKLAATSIRITPEAITLLNDYSWPGNIRELEHVISRAAVLSRAQS 425 Query: 423 SGDEVILEAQHF-----AFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHH 477 +++L HF E + V ++LR AT+ FQ I++ + Sbjct: 426 DDSDLVLSPTHFLIKKENHAEKNIANQIVTPHSKNTKDLRSATDEFQANLIKKTYQEQQQ 485 Query: 478 NWAACARMLETDVANLHRLAKRLGLKD 504 NWAA AR L+ D NLHRLAKRL LK+ Sbjct: 486 NWAATARALQLDTGNLHRLAKRLNLKE 512 >UniRef50_Q027A1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q027A1_SOLUE Length = 450 Score = 567 bits (1463), Expect = e-160, Method: Composition-based stats. Identities = 148/466 (31%), Positives = 228/466 (48%), Gaps = 17/466 (3%) Query: 38 CDASALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDP 97 L+ D + + L A L+ + D +LP+ Sbjct: 1 MKKRILVVEDEEKLRRVIELQLLSAGFDVDKAASAEEGLKIV---DRADMVLTDLKLPN- 56 Query: 98 YDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGAL 157 DG + ++ V + + + ++ M+ D + Sbjct: 57 MDGQEFLSLIRRQNSHVPVVMMTAFGNVET-AVEAMKAGATDFLLK---PFSLDHLMQVV 112 Query: 158 SNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGET 217 AL + L +N A + ++G SP M ++ IE V S VL++GE+ Sbjct: 113 DKALEVRALREENRELKAAL-GRRYEFDNIVGRSPAMQEIFAAIERVGPSRATVLLTGES 171 Query: 218 GTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEM 277 G GK+L+A+AIH SPR PLV +NC A+PE++ ESELFG+ KGAFTGA + + GKFE Sbjct: 172 GVGKDLIARAIHFHSPRKDRPLVKINCTAIPENLMESELFGYEKGAFTGAQTTKPGKFEQ 231 Query: 278 ADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLA 337 AD GT+FLDEIG++ A+Q KLLRVLQ + +R+G + +DVR++AATN+DLR + Sbjct: 232 ADTGTVFLDEIGDVPAAIQVKLLRVLQEREFERLGSNVTRHIDVRLVAATNQDLRAALEQ 291 Query: 338 GRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQH 397 G FR DL++RL+V PL++PPLRER D+ LA +F + G ++ L Sbjct: 292 GTFREDLYYRLNVVPLNIPPLRERKVDIPFLANHFVHKLAPDTGCQVESITDAGMEKLMA 351 Query: 398 YSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLR 457 Y +PGNVRELE+ I R++V+A T+ + I + P P Sbjct: 352 YHWPGNVRELENVIERSLVMATGTQLDADDI--------KLESAPRPRAQGNDNHFLPEG 403 Query: 458 EATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 + + +++E IR+AL + N + AR+L L ++GL+ Sbjct: 404 LSLDQYEQEIIREALRRADGNKSQAARLLGLTRNALRYRLTQMGLE 449 >UniRef50_Q1INE5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Acidobacteria RepID=Q1INE5_ACIBL Length = 459 Score = 567 bits (1463), Expect = e-160, Method: Composition-based stats. Identities = 148/467 (31%), Positives = 235/467 (50%), Gaps = 19/467 (4%) Query: 36 LECDASALLRYDSR-QFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSEL 94 + LL D ++ + L +A D ++ Sbjct: 1 MSVSKGKLLVVDDELSVRDSLAKWFREEGYEVTVGESANEALSRVAE-QTYDLALLDIKM 59 Query: 95 PDPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAA 154 DG+ ++ ++ + + + G + + ++ +D + L A Sbjct: 60 -RGTDGVELQRKLHELVPGLIVIMMTGYASVET-AVATLRNGAYDYITK---PLDPEETA 114 Query: 155 GALSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLIS 214 +S AL ++ E +N+ + E ++ S M ++ IE VA +D VLI+ Sbjct: 115 HLVSKALAHKRTEQENVRLKEQI--EEHAHVDLVWRSDAMKKINDAIETVAPTDATVLIT 172 Query: 215 GETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGK 274 GE+GTGKE+VA+AIH S R +P+V ++C AL E++ ESELFGH KGAFTGA + GK Sbjct: 173 GESGTGKEVVARAIHALSTRRFHPMVPVHCGALTETLLESELFGHEKGAFTGAQYRKKGK 232 Query: 275 FEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREE 334 FE+A+ GT+FLDEIG++SL Q LLRVLQ +I RVG ++ ++VD R++AATN+DL + Sbjct: 233 FEVAEGGTVFLDEIGDISLKTQTDLLRVLQEREIVRVGGNQPIKVDFRIVAATNKDLEKL 292 Query: 335 VLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNL 394 + G FR DLF+RL+VF + +PPLR+R +D+ LL +F ++ + +++ A N+ Sbjct: 293 IEEGHFRPDLFYRLNVFRIELPPLRDRREDIPLLVNHFTKKFAEQMNKRVTRVASPAMNM 352 Query: 395 LQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQ 454 LQ Y +PGNVRELE+A+ RA+V+A+ + + Sbjct: 353 LQQYPWPGNVRELENAVERAMVVAQEPELRETDFVLKV----------KAAATMSSTNGT 402 Query: 455 NLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLG 501 + E ++E I L + + N A ML+ D LH KR G Sbjct: 403 GTPKTLEDIEKEHILHVLDETNWNQTRAAEMLDIDRVTLHHKIKRYG 449 >UniRef50_A0LH02 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LH02_SYNFM Length = 510 Score = 567 bits (1462), Expect = e-160, Method: Composition-based stats. Identities = 163/507 (32%), Positives = 250/507 (49%), Gaps = 24/507 (4%) Query: 4 SVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQ--FIPLAIDGLAK 61 ++V+ + + + ++ L L + + D I A GL Sbjct: 9 ELNVIFETCRVIGQALKLDQALDTILAILSSSLAMKRATITLEDEDTGYLIIRASHGLTD 68 Query: 62 DVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFAG 121 R + I ++ D P S+ P + + + +G+P+ Sbjct: 69 AERRRGVYRKDEGITGLIFQSADSYVVPDISKEPLFLNKTRSRLIQKESISFLGVPILLH 128 Query: 122 QNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLE-SQNMLPGDATPFE 180 IG L +D + D+ +E++RL++ +A L Q++ + L D +P Sbjct: 129 GKAIGVLHVDRLFGDEVPF--EEDIRLLSIVATLIAQFVSLNRQVKLREAKLLRDCSPSG 186 Query: 181 AVKQTQ-----MIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRA 235 M+G SP M +++ IE VA S +VL+ GE+GTGK LVA+ +HE S R+ Sbjct: 187 KKGIEAGDRFFMVGRSPSMLVVQRHIEKVAPSKASVLLLGESGTGKTLVAQMLHELSIRS 246 Query: 236 VNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLAL 295 P V +NCA+LPE++ ESELFG+ KGAFTGA+ ++ G+ E A+ GT+FLDE+GEL+ AL Sbjct: 247 SAPFVKINCASLPENLLESELFGYEKGAFTGAVRSKPGRIEEAEGGTVFLDEVGELTPAL 306 Query: 296 QAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSV 355 QAKLLR LQ + +R+G R VDVRVLAATNRDL V G FR DL++RL+VFP+ + Sbjct: 307 QAKLLRFLQDKEFERLGSTRTRVVDVRVLAATNRDLAAVVAEGTFREDLYYRLNVFPIQI 366 Query: 356 PPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAV 415 PPLR R +D+ L +F ++ G ++ A LL Y +PGNVRE+E+ + R V Sbjct: 367 PPLRARKEDIPDLLHHFLDRISREYGRRI-GITNAAMALLAGYDWPGNVREMENLVERMV 425 Query: 416 VLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQN 475 ++A G V+ P + L E +R+ I AL +N Sbjct: 426 IMADEDEIGVNVLP------------PFLSEQMTGSGGETL-SRIEKMERKEILAALERN 472 Query: 476 HHNWAACARMLETDVANLHRLAKRLGL 502 N A+ L + + ++ GL Sbjct: 473 GWNQTRTAKELGITLRQIGYRVRKFGL 499 >UniRef50_Q3A2M3 Two component, sigma54 specific, transcriptional regulator, Fis family n=16 Tax=Bacteria RepID=Q3A2M3_PELCD Length = 492 Score = 567 bits (1462), Expect = e-160, Method: Composition-based stats. Identities = 142/474 (29%), Positives = 226/474 (47%), Gaps = 13/474 (2%) Query: 30 TTLRQVLECDASALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFP 89 + + E L+ D L +D +G + A + + Sbjct: 18 SAMENRQENQHRILVVDDEESMREFLCILLKRDGYLVDAVSDGQQAV-ACLKEQNYDLII 76 Query: 90 ADSELPDPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLI 149 +D ++P DG + A + + + +D M+ +D + Sbjct: 77 SDIKMPR-LDGFGLLDHVKERFASTAMIMITAFSTAEQ-AVDAMKKGAYDYITKPFKN-- 132 Query: 150 AALAAGALSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDL 209 + NAL L +N+ + +IG S M + IE V+AS + Sbjct: 133 -EEIRLVVENALERMDLRRENLQLKKEL-GQRFSFANIIGKSKVMQGVYDLIEKVSASKV 190 Query: 210 NVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAIS 269 NVLI+GE+GTGKELVA+AIH S R P V + C A+PE++ ESELFGH KGAFTGA+ Sbjct: 191 NVLITGESGTGKELVARAIHYNSDRHDRPFVAIYCGAIPENLLESELFGHEKGAFTGAVQ 250 Query: 270 NRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNR 329 + G FE+AD GTLFLDEI EL +Q KLLRV+Q + ++VG R L+VDVR++AATN+ Sbjct: 251 QKQGLFEVADGGTLFLDEIAELPPMMQVKLLRVIQEHEFRKVGGTRDLKVDVRLVAATNK 310 Query: 330 DLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSA 389 DL + V +FR DL++RL+V + +PPLR+R +D+ LL +F ++ + Sbjct: 311 DLAQAVTEDQFREDLYYRLNVIQVGLPPLRDRREDIPLLVSHFLQKLTPGF---STTIPD 367 Query: 390 GARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAV 449 G Y +PGN+RELE+ + R VVL ++ + ++ + Sbjct: 368 GVMRRFLDYHWPGNIRELENTVERCVVLGGKGEITEDSLPPHM---LCISGTGDQQLTEL 424 Query: 450 PVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 P +L + A +++ + +AL + A +L ++ + G++ Sbjct: 425 PEEGLDLDDYLGAIEKDILLKALDRTGGVRKRAAELLHITFRSIRYRLAKFGIE 478 >UniRef50_B5YL21 Acetoacetate metabolism regulatory protein AtoC n=3 Tax=Bacteria RepID=B5YL21_THEYD Length = 446 Score = 565 bits (1458), Expect = e-159, Method: Composition-based stats. Identities = 138/462 (29%), Positives = 217/462 (46%), Gaps = 26/462 (5%) Query: 41 SALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDG 100 + +L D AI + + F + + + D LP DG Sbjct: 2 ANILYIDDEISALKAISAILRKEGYTVFTSTTAEEGMEVLKTTTIECILLDYRLP-GMDG 60 Query: 101 LIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVF-SDEELRLIAALAAGALSN 159 + + + + I ++ M+ + + L+ + A+ Sbjct: 61 IDLLRWLKHCEMSIPTVMLTAYGTIEK-AVEAMKLGAYHYLIKPVDTELLLNVIKEAIEK 119 Query: 160 ALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGT 219 + I++LE ++IG S + ++ +++VA S+ NVLI+GE+GT Sbjct: 120 SKGIQKLEK-----------IETPFPEIIGKSKTIQEIFYIMQMVAESNANVLITGESGT 168 Query: 220 GKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMAD 279 GKELVA+AIH+ S R P + ++C +PE++ ESELFGH KGAFTGA ++G E+A+ Sbjct: 169 GKELVARAIHKNSLRKSKPFIIVDCTTIPENLLESELFGHEKGAFTGATERKTGLIELAN 228 Query: 280 NGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGR 339 GT+FLDEIGEL + LQ KLLR LQ +IQR+G + ++VDVRV++ATN+DL + + G Sbjct: 229 EGTVFLDEIGELPMLLQKKLLRFLQEKEIQRIGSTQRIKVDVRVISATNKDLEKAIKEGS 288 Query: 340 FRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYS 399 FR DL+ RL+V +++PPLRER +D+ LL +F + L N L +Y Sbjct: 289 FREDLYWRLNVVRINLPPLRERKEDIPLLVNHFLNKFSKENNKPIPQLEPEVMNALINYY 348 Query: 400 FPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREA 459 +PGN+REL + I RAVVL+ + + + + Sbjct: 349 WPGNIRELANVIERAVVLSPSGLISIKHLPRRIQENTGWTIIKENTFN------------ 396 Query: 460 TEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLG 501 ++ I +AL N A +L L K G Sbjct: 397 LLEVEKALILKALNSTGWNQTKAAEILGISRKQLRTKMKHHG 438 >UniRef50_B6YRB5 Nif-specific regulatory protein n=1 Tax=Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 RepID=B6YRB5_AZOPC Length = 521 Score = 565 bits (1457), Expect = e-159, Method: Composition-based stats. Identities = 147/505 (29%), Positives = 243/505 (48%), Gaps = 18/505 (3%) Query: 5 VDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDS--RQFIPLAIDGLAKD 62 + L+N+ L +D + ++ L L+ + +D + GL + Sbjct: 17 LTFLSNMGDLLNEMEDPKDALEGILKNLCGFLKAFVGMITLHDRLSGMLMTSVSYGLTAE 76 Query: 63 VLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFAGQ 122 + G + +A S+ + + A + +P+ Sbjct: 77 EKMKAIYQTGEGIIGRVAATRKPAIISDISKDSVFLNRTGIVSTERPM-AFLCVPVINKN 135 Query: 123 NLIGALTLDGMQPDQFDVFSDEELR-----LIAALAAGALSNALLIEQLESQNMLPGDAT 177 L+G L++ + D +E++ LI + + +E+L +N L + Sbjct: 136 ELVGTLSIHKVNDRGMDFSYEEKILTIIGSLIGKHISVRRRHIEELEELRRENQLLQSQS 195 Query: 178 PFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVN 237 + + M+G S M +L ++ VA ++ V+I GE+G GKEL+A+AIH+AS R Sbjct: 196 IEKPFRPDNMVGNSALMRELYGLVKRVAPTNSTVIIRGESGVGKELIAEAIHKASSRIKK 255 Query: 238 PLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQA 297 P V +NC+ALPE++ ESELFG+ KGAFTGA SG+FE+AD GT+FLDEI ++ ++Q Sbjct: 256 PFVRVNCSALPENLIESELFGYEKGAFTGAERQHSGRFELADGGTIFLDEIADIPFSVQV 315 Query: 298 KLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPP 357 KLLR+LQ +R+G ++ DVR++ ATNR+L E + FR DL++R+ VFP+ VP Sbjct: 316 KLLRILQQRQFERIGGTHTIQTDVRIVTATNRNLEEMLQNNTFREDLYYRIHVFPIYVPA 375 Query: 358 LRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVL 417 LRER D+ +L +F ++ + + +++GA ++L YS+PGNVRELE+ I RA++L Sbjct: 376 LRERRADITILTDHFIQKINKQNQTNVKRITSGALDMLMMYSWPGNVRELENVIERAMIL 435 Query: 418 ARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHH 477 + + V++ V L +R+ I L N Sbjct: 436 TTDDVIHSYNLPPSL----------QTGVSSDTVKVGRLDLVLGKVERQMIMDTLIANRG 485 Query: 478 NWAACARMLETDVANLHRLAKRLGL 502 N A A L + KR + Sbjct: 486 NVAKSAFQLGISERVMGLRIKRYNI 510 >UniRef50_B5JMU1 Sigma-54 interaction domain family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JMU1_9BACT Length = 539 Score = 565 bits (1456), Expect = e-159, Method: Composition-based stats. Identities = 177/508 (34%), Positives = 263/508 (51%), Gaps = 20/508 (3%) Query: 4 SVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDAS--ALLRYDSRQFIPLAIDGLAK 61 + +L +I+ L++ + D + + ++ + + ++L D+ F+ GL + Sbjct: 36 ELGLLFSISQTLEKSLDLGDIVRPALRRMQGFIGLERGTISILNRDTGGFLLAEAIGLPR 95 Query: 62 DVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVG---LPL 118 + + P LE + D V + ESL++ VG +PL Sbjct: 96 GLPPANYLDMIRPILERTVESRDPVVITDLAVWARKQGVEEDVLESLRLADGVGMVSVPL 155 Query: 119 FAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALS----NALLIEQLESQNMLPG 174 + IG L+++ + L +IA++ A A A I+ L ++N Sbjct: 156 KFDEEAIGTLSIERANTNFGWESDLRILGMIASIVAQAARVRRDAAEQIQSLRAENERLQ 215 Query: 175 DATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPR 234 + + +IG S M + IE VA S VLI GE+GTGKELVAKA+HE S R Sbjct: 216 EEI-AHGFRPENIIGSSSTMRSVYYHIEQVANSATTVLIRGESGTGKELVAKALHEKSSR 274 Query: 235 AVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLA 294 P V NCAALP+S+ ESELFGH KGAFTGA++ R G+FE A+ GT+FLDEIG++SL+ Sbjct: 275 RNKPFVKFNCAALPDSIIESELFGHEKGAFTGALAMRKGRFESANGGTIFLDEIGDISLS 334 Query: 295 LQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLS 354 Q KLLRVLQ + +RVG RVDVRV+AAT+R+L E + AG FR DL++RL+VFP+ Sbjct: 335 TQVKLLRVLQEREFERVGSQETRRVDVRVIAATSRNLEEMMEAGTFREDLYYRLNVFPIY 394 Query: 355 VPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRA 414 +PPLRER D+++LA +F E+ R G + +S+ A ++L Y + GNVRELE+ I RA Sbjct: 395 MPPLRERKCDILMLADHFIEKFAKRMGRKPIRISSAAIDMLVSYHWAGNVRELENCIERA 454 Query: 415 VVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQ 474 V+LA+ + + L +A +A +RE I AL + Sbjct: 455 VLLAKGQSIKAHHLPPTLQKKSRAESSEVA----------TLEDAIQALEREMIVDALKE 504 Query: 475 NHHNWAACARMLETDVANLHRLAKRLGL 502 N A +R L K+ G+ Sbjct: 505 TGSNLAEASRRLGLTERKAGLRVKKYGI 532 >UniRef50_C9RS71 Transcriptional regulator, NifA subfamily, Fis Family n=5 Tax=Bacteria RepID=C9RS71_FIBSS Length = 509 Score = 565 bits (1456), Expect = e-159, Method: Composition-based stats. Identities = 161/505 (31%), Positives = 242/505 (47%), Gaps = 13/505 (2%) Query: 4 SVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLAKDV 63 + V+ I++ + + + ++ L L A GL + Sbjct: 10 EISVIQKISVAIIHERDVEKLLENVLGILESELGMLRGTFALLFGDTLKIEASRGLDETE 69 Query: 64 LGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFAGQN 123 R F G +A G P + + +V A + +PL Sbjct: 70 KQRGFYRMGEGITGHVAERGLSHVIPDLRKDSRFLNRTGSRHYETQV-AFICVPLIHDGQ 128 Query: 124 LIGALTLDGMQPDQFDVFSDEELRLIA-----ALAAGALSNALLIEQLESQNMLPGDATP 178 +IG L++D D+ D L I A + E + +N D Sbjct: 129 VIGTLSIDRPVDGSTDLDRDVALLEIIANITGDAANECIELHGEREAMLEENRKLRDML- 187 Query: 179 FEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNP 238 + +++G M Q+ +++ VA SD VLI G +GTGKE++A+AI S R P Sbjct: 188 --SNNPGELVGNCREMRQVYEQVRQVAPSDATVLIRGGSGTGKEMIARAIVNLSARKDKP 245 Query: 239 LVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAK 298 + LNCAALPE++ ESELFGH KGAFTGA++ R G+ E A+ GTLFLDE+G+L++ Q K Sbjct: 246 FITLNCAALPENLVESELFGHEKGAFTGALNRRIGRAEAANGGTLFLDEVGDLTMQTQVK 305 Query: 299 LLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPL 358 LLR LQ RVG + L DVR LAAT+R+L E + G+FR DLF+RL++FP+++P L Sbjct: 306 LLRFLQERTFSRVGSNEELHSDVRFLAATSRNLEELIAQGKFREDLFYRLNIFPITMPDL 365 Query: 359 RERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLA 418 +R D+ILLA +F E+ LR LS A NLL Y +PGNVRELE+ I R V+ A Sbjct: 366 AKRKSDIILLAEHFIEKMNLRYNKKVGRLSTTAINLLMSYHWPGNVRELENCIERGVLTA 425 Query: 419 RATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHN 478 + + + ++ + L + ++RE I +A+ +N N Sbjct: 426 TDDCIHSYNLPPSLQTSLSVGSVGGTPSDKIA----PLEVMMDNYEREIITEAIKRNDGN 481 Query: 479 WAACARMLETDVANLHRLAKRLGLK 503 +A R L ++ +LG+K Sbjct: 482 ISAAGRDLGVSPRMMNYRMNKLGIK 506 >UniRef50_Q2IQM1 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Myxococcales RepID=Q2IQM1_ANADE Length = 485 Score = 564 bits (1455), Expect = e-159, Method: Composition-based stats. Identities = 149/459 (32%), Positives = 227/459 (49%), Gaps = 16/459 (3%) Query: 42 ALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGL 101 L+ D + L+++ A +G L A+ AD +P DG+ Sbjct: 15 ILVVDDEQNARVALRTILSEEGYEIAEAADGEEAL-ALLPGFAPAAVLADVRMPR-MDGI 72 Query: 102 IPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNAL 161 + + + + + + A ++ M+ + L L AL Sbjct: 73 NLLRRAREQGSDAVFVMMTAFASVEA-AVEAMRAGAENYLVK---PLDVNAVLVVLEKAL 128 Query: 162 LIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGK 221 +L+ + E + ++G +P + + + ++ A + VLI GE+GTGK Sbjct: 129 EKLRLQRDTANLRERVR-ERYRFHNIVGDAPELHAVYEVVKRAAPTRATVLILGESGTGK 187 Query: 222 ELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNG 281 EL A+A+HE SPRA + +NCAAL E++ ESELFGH KGAFTGAI + G+FE+AD G Sbjct: 188 ELFAQALHEESPRADKAFIKVNCAALSETLLESELFGHEKGAFTGAIGRKEGRFELADGG 247 Query: 282 TLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFR 341 TLFLDEIG++S ALQ KLLRVLQ + +RVG + L+VDVR++AATNRDL EV GRFR Sbjct: 248 TLFLDEIGDISPALQIKLLRVLQQREFERVGGTQTLKVDVRLVAATNRDLAAEVKNGRFR 307 Query: 342 ADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFP 401 DL++RL+V +++PPLR+R D+ L +F ++ G L+ G N + + +P Sbjct: 308 EDLYYRLNVVAVTLPPLRQRKGDIPALVSHFIDKYSKAYGKDIRGLAPGTLNAVLSHDWP 367 Query: 402 GNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATE 461 GNVRELE+ + RAVVL + + + + P P + Sbjct: 368 GNVRELENVVERAVVLCKGSELTADDLPPTLRGPRPRERAPGALIPGA---------TLY 418 Query: 462 AFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRL 500 +RE I + L + + A +L V + K Sbjct: 419 EIEREAILRTLEMVGGSTSRAAEILGISVRKIQYRLKEY 457 >UniRef50_Q2LRW3 Response regulator containing sigma 54 interaction domain n=3 Tax=Bacteria RepID=Q2LRW3_SYNAS Length = 457 Score = 564 bits (1455), Expect = e-159, Method: Composition-based stats. Identities = 160/466 (34%), Positives = 240/466 (51%), Gaps = 13/466 (2%) Query: 38 CDASALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDP 97 S L+ D D L + + G + + D LP Sbjct: 1 MQKSILIVDDEESICKSLGDILVDEGYEVQTVQSGEEAI-RLLDEDLPGIVLLDIWLP-G 58 Query: 98 YDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGAL 157 DG+ + +H + + + +G I + + FD E L L Sbjct: 59 IDGMEVLKTIKSLHPKLPVVMMSGHGTIET-AVKATKLGAFDFI---EKPLSLEKIILTL 114 Query: 158 SNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGET 217 +AL + +LE +N+L + ++ G SP + +L + I IVA ++ +LI GE Sbjct: 115 KHALDLSRLEEENVLLKQKINRD----YELTGKSPPIIELMEMISIVAPTNAWILIMGEN 170 Query: 218 GTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEM 277 GTGKELVA+AIH S RA P+V +NCAA+PE + ESELFGH KGAFTGA + GKF++ Sbjct: 171 GTGKELVARAIHRQSKRADKPMVEVNCAAIPEELIESELFGHEKGAFTGATEKKRGKFDI 230 Query: 278 ADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLA 337 A GT+FLDE+ ++SL QAK+LR+LQ +RVG ++ +++DVRVLAATN+DL +E+ Sbjct: 231 AHEGTIFLDEVADMSLKAQAKILRILQEKKFERVGGNKVIQLDVRVLAATNKDLEKEMEE 290 Query: 338 GRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQH 397 GRFR DLF+RL+V PL VPPLR R +D+ LLA F L++G + A LL Sbjct: 291 GRFRQDLFYRLNVIPLKVPPLRSRKEDIPLLAERFLSDFALKEGEPGKTIQDDALALLME 350 Query: 398 YSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLR 457 +S+PGNVREL++ I R ++ + I + ++ + R Sbjct: 351 HSWPGNVRELKNFIERLAIMTTSNVITVHDIPP---LPRDGHKVEPFREPGFELLAGSFR 407 Query: 458 EATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 EA F+++ I + L + N + A + + +NLH+ K GL+ Sbjct: 408 EAKMDFEKQYISRKLREFDGNISKTAESIGLERSNLHKKIKAYGLE 453 >UniRef50_A6M003 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Bacteria RepID=A6M003_CLOB8 Length = 472 Score = 564 bits (1455), Expect = e-159, Method: Composition-based stats. Identities = 142/464 (30%), Positives = 229/464 (49%), Gaps = 12/464 (2%) Query: 42 ALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGL 101 L+ D + L K G L +A+ D +P+ DGL Sbjct: 17 VLVADDELSLRMVLQTALNKVGYEVDTVKNGKEALC-MAQENHYDVAILDIRMPE-VDGL 74 Query: 102 IPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNAL 161 E K+ + + L ++ M+ +D +S A+ Sbjct: 75 QAFYEIHKIKPNLPIILMTAFGSSET-AVNAMKHGAYDYILK---PFNLDEVKIIVSRAI 130 Query: 162 LIEQLESQNMLPGDATPF---EAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETG 218 ++QL + + A+ +++G S + ++ K I VA S VL++GE+G Sbjct: 131 RMQQLTKEVVYLTQEVQEMGMTAMTPGKIVGESSKIQEVYKIIGRVANSKATVLLTGESG 190 Query: 219 TGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMA 278 TGK +VAKAIH AS R P + +NC ++PE + ESE+FGH KGAFT A + GKFE+A Sbjct: 191 TGKGMVAKAIHYASDRREKPFIQVNCGSIPEGLLESEIFGHEKGAFTSAFFQKPGKFELA 250 Query: 279 DNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAG 338 + GTLFLDEI E+S LQ KLLRVLQ + +RVG + +VR++AATNRDL +E+ Sbjct: 251 EGGTLFLDEIAEMSPNLQVKLLRVLQEKEFERVGGTKTFHTNVRIIAATNRDLNKEISEK 310 Query: 339 RFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHY 398 FR DL++RL+V + +PPL ERG+D++LLA YF ++ + G + + + ++ ++Y Sbjct: 311 SFRKDLYYRLNVVSICLPPLCERGEDIVLLADYFLKRFSVEVGRNGMFFAPEVLDIFRNY 370 Query: 399 SFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLRE 458 S+PGN+RELE+A+ A++++ E + + E + + LRE Sbjct: 371 SWPGNIRELENAVEHAIIMSNTRVILPENLPLSIKV---EDVEADGTIILGDDSFKPLRE 427 Query: 459 ATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 ++ I +A+ + N A++L+ L + Sbjct: 428 VLLEVEKRHISEAIERTGGNRTQAAKLLQISRRALLYKINENNI 471 >UniRef50_Q1Q1B9 Strong similarity to sigma 54 response regulator protein n=3 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q1B9_9BACT Length = 469 Score = 563 bits (1452), Expect = e-159, Method: Composition-based stats. Identities = 141/462 (30%), Positives = 225/462 (48%), Gaps = 10/462 (2%) Query: 42 ALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGL 101 L+ D + + G ++ ++ D ++ +GL Sbjct: 7 ILVVEDQDAMRESLLIAFKDEGYHVECVSSGEGAIKKLSDGNVYDLVVTDLKM-KKVNGL 65 Query: 102 IPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNAL 161 + + + I + ++ +D + NAL Sbjct: 66 EVLNAVKTENPATEVIVITAYGAIST-AVQAIREGAYDYVTK---PFRYQEMLKVAKNAL 121 Query: 162 LIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGK 221 ++L+ + E K +IG S M ++ K V+ ++ VLI+GE+GTGK Sbjct: 122 EKKELKERLKYLEGEVR-EKYKLEGIIGNSAVMVEVLKVTADVSRTESTVLITGESGTGK 180 Query: 222 ELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNG 281 EL+A+AIH PR+ P V +NC ALPE++ ESELFGH KG+FTGA+ + G F A G Sbjct: 181 ELIARAIHYNGPRSGYPFVVINCGALPENLQESELFGHAKGSFTGAVKEKVGLFHHAHKG 240 Query: 282 TLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFR 341 T+FLDEIGE S + Q KLLR LQ G+I++VG ++ + VDVR++AATN +L V GRFR Sbjct: 241 TIFLDEIGETSASTQVKLLRFLQDGEIRQVGGNKSIHVDVRIIAATNENLERAVNQGRFR 300 Query: 342 ADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFP 401 DLF+R++V + +P L+ER +D+ LL YF E + + V S A +L +Y +P Sbjct: 301 KDLFYRINVIRIHLPQLKERKEDIPLLVNYFLELYTDKLKKDKRVFSGSAMAVLLNYDWP 360 Query: 402 GNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATE 461 GN+REL++ + RAV L++ G E + + P +V VK ++ E Sbjct: 361 GNIRELQNIVERAVALSKNQVIGVEALPLPTGGFVAHNSNPERDV----TVKSSIVETLS 416 Query: 462 AFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 ++ I +A+ + N +++L L R K+ +K Sbjct: 417 EQEKNAIVEAMNKYGGNQTKVSQVLGISTTTLWRKIKKYKIK 458 >UniRef50_B3DZA5 Transcriptional regulator NifA, contains GAF, AAA-type ATPase, and DNA binding domains n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DZA5_METI4 Length = 529 Score = 563 bits (1452), Expect = e-159, Method: Composition-based stats. Identities = 161/521 (30%), Positives = 248/521 (47%), Gaps = 28/521 (5%) Query: 7 VLANIAIELQRGIGHQ-DRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLAKDVLG 65 + I+ L F+ + L L+ S + + I LA G + Sbjct: 9 AIYEISKILTSSQPLLFQSFRESLKILNIHLKLQKSLIFIRKGQDPILLAGCGNDQADNH 68 Query: 66 RRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVH-ACVGLPLFAGQNL 124 F +E + + G + P + P + ++ + + LP+ + Sbjct: 69 FSFYYF---FIEQVLKNGFPIVVPDIHKEPYFSSDISHEEDGTEEPISLFCLPIRYEREC 125 Query: 125 IGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIE--------QLESQNMLPGDA 176 IG L + + + S+ L L A L ++ Q P Sbjct: 126 IGVLVCEKKRESALEPLSETTLTLSLATNLFGQKIKLSMDNFKPIPFPQSLELPPPPRKN 185 Query: 177 TPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAV 236 + +IG S M + + VA S VL+ GE+GTGKE++A+ IH SPR Sbjct: 186 GDIQLKNNGGVIGQSKQMQAVMDLVYHVAPSRSTVLLRGESGTGKEVIARTIHYLSPRKE 245 Query: 237 NPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQ 296 P + +NC+ALPE++ ESELFGH KGAFTGA+ R G+FE+A GTLFLDEIG++S A+Q Sbjct: 246 GPFIKVNCSALPETILESELFGHEKGAFTGALFERKGRFELAHGGTLFLDEIGDISPAVQ 305 Query: 297 AKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVP 356 KLLRVLQ + +RVG ++ +RVDVRV+ ATN++L E VL G FRADL+ R++V +S+P Sbjct: 306 VKLLRVLQEREFERVGGNKTIRVDVRVITATNKNLEEAVLKGEFRADLYFRINVVSISLP 365 Query: 357 PLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVV 416 PLRER +D+ LLA + + + ++ A LL + +PGNVRELE+ + RA Sbjct: 366 PLRERKEDIPLLADHILNKIGKELNRK-LRITPEALKLLINCHWPGNVRELENCLERAAT 424 Query: 417 LARATRSGDEVILEAQHF-AFPEVTLPTPEVAAVPVVKQNLREATEAFQR---------- 465 +R + + ++ + P + +V + PVV ++ E R Sbjct: 425 NSRNNWIDEIDVACRRNQCSSPMLWKKELQVISTPVVSSEEAKSREETPRSSFFSPLISD 484 Query: 466 ---ETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 E I QA+ + A AR+L L K+ G++ Sbjct: 485 DPKEKIIQAMEKCGWVQAKAARLLNITPRQLGYALKKYGIE 525 >UniRef50_O87455 Regulatory protein luxO n=68 Tax=Gammaproteobacteria RepID=LUXO_VIBC3 Length = 530 Score = 562 bits (1450), Expect = e-158, Method: Composition-based stats. Identities = 249/515 (48%), Positives = 326/515 (63%), Gaps = 15/515 (2%) Query: 3 FSVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLAKD 62 FS+ L + + L G +++RF RL+ +R+ + CD L+ + PLA+ GL +D Sbjct: 4 FSLSTLLEMTVGLASGANNEERFHRLLDAVRKAVICDCVVLMSLHNDTLTPLAMQGLTRD 63 Query: 63 VLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIP-GQESLKVHACVGLPLFAG 121 LGRRF + HPRL I A VRF AD LPDP+DGL+ ++ L +H+C+GLPL G Sbjct: 64 TLGRRFVVSEHPRLAQICSADLPVRFAADCPLPDPFDGLLLDSEDDLPMHSCMGLPLHFG 123 Query: 122 QNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLE---SQNMLPGDATP 178 + L+G LTLD ++PD FD S L ++AA+AA L L +LE Q L + Sbjct: 124 EQLLGILTLDSLKPDAFDHLSPRSLEILAAIAAATLKMTLTFSELENQAKQTQLRLEELN 183 Query: 179 FEAVKQT--QMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAV 236 EA + ++IG S M +K +I++VA S N+LI GETG GKELVA+ IH+ S R Sbjct: 184 QEAWSRDSVEIIGNSGPMLAMKADIDVVAPSQFNILIHGETGVGKELVARTIHQRSNRKR 243 Query: 237 NPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQ 296 PLVY+NCAA+PE++ ESELFGHVKGAFTGA R GKF +AD GTLFLDEIGEL L+ Q Sbjct: 244 QPLVYVNCAAIPENLLESELFGHVKGAFTGADRARMGKFALADGGTLFLDEIGELPLSAQ 303 Query: 297 AKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVP 356 +K+LR LQ +IQ VG DR VDVR+LAATNRDL++EV AGRFRADL+HRLSV+P+ VP Sbjct: 304 SKILRALQNHEIQPVGQDRVQTVDVRILAATNRDLKKEVEAGRFRADLYHRLSVYPIYVP 363 Query: 357 PLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVV 416 PLRER D+ LLAGYF EQ R + G++++ L + L Y +PGNVRELEH I+RA + Sbjct: 364 PLRERKGDLSLLAGYFVEQARRKLGITQLKLHGDVLSQLIQYPWPGNVRELEHVINRAAL 423 Query: 417 LA----RATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQ-----NLREATEAFQRET 467 A R + + P + P P++ + LR+AT+ FQR Sbjct: 424 KAKARQRGRPVTTLKVEDLGELQGPRAAMVEPTAQDEPMLGEWIGELGLRDATDEFQRHL 483 Query: 468 IRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 I + L Q NWA AR L+TD ANL RLAKRLG+ Sbjct: 484 ISETLTQADFNWAEAARRLQTDRANLTRLAKRLGI 518 >UniRef50_Q026M7 Transcriptional regulator, NifA subfamily, Fis Family n=4 Tax=Bacteria RepID=Q026M7_SOLUE Length = 706 Score = 562 bits (1449), Expect = e-158, Method: Composition-based stats. Identities = 164/514 (31%), Positives = 252/514 (49%), Gaps = 35/514 (6%) Query: 4 SVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAI-----DG 58 + +L + + + ++ + + ++R V++CD + + +G Sbjct: 200 RLRLLLEVNNSIASNLELRELLRAISASIRPVMQCDGVGVALPEGENQQLRVYALDFPNG 259 Query: 59 LAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPL 118 + + G+ + S P P + + A +PL Sbjct: 260 NGRVREDILIPANEDSPGARAFQNGEPANILSASIDP-----TDPLATAEGLKAVCHIPL 314 Query: 119 FAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNAL-------LIEQLESQNM 171 + +G L+L ++P F E L L+ A A+ NAL L ++L + + Sbjct: 315 ISRNRTVGLLSLARLEPVAFSPRDIEFLSLVGNQVAIAVENALAYHEISALKDRLAQEKI 374 Query: 172 LPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEA 231 D E + +++G S + + +EIE VA +D VLI GETGTGKEL+A+AIH Sbjct: 375 YLEDEIRSE-LNFEEIVGRSQALRTVLQEIETVAPTDSTVLIYGETGTGKELIARAIHNL 433 Query: 232 SPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGEL 291 S R+ N V LNCAA+P + ESE+FGH KGAFTGA++ R G+FE+A +GT+FLDEIGE+ Sbjct: 434 SSRSRNSFVKLNCAAIPTGLLESEMFGHEKGAFTGAVAQRIGRFELAHHGTVFLDEIGEI 493 Query: 292 SLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVF 351 L LQ KLLRVLQ + +R+G R +R D R++AATNRDL V FRADLF+RL+VF Sbjct: 494 PLELQPKLLRVLQEREFERLGSSRTMRTDARLIAATNRDLATMVEDRNFRADLFYRLNVF 553 Query: 352 PLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAI 411 P+ VP LR+R +D+ LL +F +Q R G + + N+L Y +PGN+REL++ + Sbjct: 554 PVQVPALRDRPEDIPLLVRHFVQQFARRMGKAVDTIPTETMNVLVRYHWPGNIRELQNLL 613 Query: 412 HRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQA 471 RAV+L+ + P T E E+ +R I +A Sbjct: 614 ERAVILSAGPVLKVPLNDLQLQAPAPTTARKT--------------ETLESAERRHILEA 659 Query: 472 LAQNHHNWA---ACARMLETDVANLHRLAKRLGL 502 L + A L + L ++LG+ Sbjct: 660 LEAADWVISGPKGAAEALGLKRSTLQARMEKLGI 693 Score = 69.7 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 34/202 (16%), Positives = 75/202 (37%), Gaps = 6/202 (2%) Query: 6 DVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPL--AIDGLAKDV 63 + L ++ + ++ F+ + L +V++ D + +YD L A + ++ Sbjct: 25 EALIRVSQAIGAHRDPKELFRAMTRELHRVMQFDGIVIAQYDEASNEILWNACEVCSQQG 84 Query: 64 LGRRFA-LEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFAGQ 122 R + + + + + PA + +I S + LPL Sbjct: 85 AVRPPDIPADETITKWVYQRQEPLVIPALDQETRFP-RMIEFLRSKGFQSICALPLTTVH 143 Query: 123 NLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIE--QLESQNMLPGDATPFE 180 IG++ + +PD + L L+A AA A+ +AL E Q+ + + Sbjct: 144 RRIGSVAVASKRPDAYCKEEVRFLSLVADQAALAIDDALNFETSQVAQAALQRKNDRLRL 203 Query: 181 AVKQTQMIGLSPGMTQLKKEIE 202 ++ I + + +L + I Sbjct: 204 LLEVNNSIASNLELRELLRAIS 225 >UniRef50_D1R5K3 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R5K3_9CHLA Length = 462 Score = 561 bits (1448), Expect = e-158, Method: Composition-based stats. Identities = 141/465 (30%), Positives = 227/465 (48%), Gaps = 10/465 (2%) Query: 42 ALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGL 101 L+ D + L + + A G L I D ++PD G+ Sbjct: 4 ILIVDDESIVRNFLAETLRRKNIEVVTAESGKKALSLIKDT-PFDMVITDMKMPD-LTGI 61 Query: 102 IPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNAL 161 ++ ++ + + I ++ M+ F+ + A Sbjct: 62 DILRKCKEISPNTIVVVITAFGSIEN-AVEAMKLGAFNYLIK---PFSPDTIEAIIEKAK 117 Query: 162 LIEQLESQNMLPGDATPFEAVKQT-QMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTG 220 L +N + Q+IG SP M Q+ +++ VA S+ +V I+GE+GTG Sbjct: 118 EHLSLVQENQYLRQQVSTGDSRNHFQIIGESPIMKQILRDVTRVAQSNASVFINGESGTG 177 Query: 221 KELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADN 280 KE++A+AIH S R+ P + +NCAA+PE++ ESE FGH KGAFTGA R G+FE+A Sbjct: 178 KEVIAQAIHANSARSQFPFIKVNCAAIPETLIESEFFGHEKGAFTGANFKRLGRFELAHK 237 Query: 281 GTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRF 340 GTL LDEI E+ LA+QAKLLR +Q + +RVG + ++VDVR+++ +NRD+++ + Sbjct: 238 GTLLLDEITEIPLAVQAKLLRAIQEQEFERVGGSKPIKVDVRLISTSNRDMKDAIAHKIL 297 Query: 341 RADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSF 400 R DL++RL+V P+ +PPLR+R +D++ LA YF E+ + S + L Y++ Sbjct: 298 REDLYYRLNVVPIYLPPLRDRPEDILPLAHYFLEKMCMENHKQAKTFSKESIKKLVGYAW 357 Query: 401 PGNVRELEHAIHRAVVLARATRSGDEVI-LEAQHFAFPEVTLPTPEVAAVPVVKQNLREA 459 PGNVREL + + RAVV+ + E + +E H P T T + + Sbjct: 358 PGNVRELANIVERAVVMTTNSEITPEHLYIENNHPNLPLRTASTLSQNTL--TSLPVGMT 415 Query: 460 TEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLKD 504 + ++ I + L H+N A +L V L +K+ Sbjct: 416 LQELEKRLIIETLQAQHNNRTKTAEVLGISVRTLRNKLNEYNMKN 460 >UniRef50_D0LFQ8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LFQ8_HALO1 Length = 515 Score = 561 bits (1447), Expect = e-158, Method: Composition-based stats. Identities = 159/478 (33%), Positives = 240/478 (50%), Gaps = 20/478 (4%) Query: 43 LLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLI 102 +L D Q A K A G LE I R +V D +P GL Sbjct: 9 ILVVDDEQDNLDAFRFNFKRAFRLLCASSGEEALE-ILRDNEVAVIVTDQRMPR-MTGLE 66 Query: 103 PGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQ-FDVFSDE-ELRLIAALAAGALSNA 160 ++ ++ + + L +D + Q + + E + + + AL Sbjct: 67 LLLKAAEIQPDAVGIILTAYTDLDVL-VDAINLGQIYRYVTKPWEAKELRGILTHALERY 125 Query: 161 LLIEQLESQNMLPGD------ATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLIS 214 L+ + + + A +IG S + ++ ++E VA ++ VL+ Sbjct: 126 ALLRENQRLMAQLREYTGYLNQEIHGAFDFGNIIGDSAALGEVLSKVEQVAPTNSTVLLR 185 Query: 215 GETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGK 274 GETGTGKELVA AIH S R P V +NCAAL V ESELFGH KGAFTGA++ R G+ Sbjct: 186 GETGTGKELVAHAIHINSSRENQPFVRVNCAALAPGVLESELFGHEKGAFTGAVAQRPGR 245 Query: 275 FEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREE 334 FE+AD GTLFLDE G+L + +Q KLLR LQ + +RVG + ++VDVRV++ATNRDL Sbjct: 246 FELADGGTLFLDECGDLPMEVQIKLLRALQEREFERVGGTQTIKVDVRVISATNRDLEAM 305 Query: 335 VLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNL 394 + AG FR DL++RL+VFP+ +PPLR+R +D+ L +F + + A + Sbjct: 306 IEAGSFREDLYYRLNVFPIHLPPLRDRLEDLPALVAHFIAKFARSGMTRTPGVRGAALDK 365 Query: 395 LQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAV----- 449 L+ Y++PGNVRELE+ I RA++LAR + + + TP V + Sbjct: 366 LRSYTWPGNVRELENIIERAMILARGRELDADHLDFGRRAQNATPVSGTPSVISETASHS 425 Query: 450 ----PVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 + L E +R I A+ ++++N A+ ARML + + L+ ++ GL+ Sbjct: 426 PPLIGDESKPLAERLLDSERREIIAAVEKSNNNIASAARMLGINRSTLYYRMRKHGLE 483 >UniRef50_Q1PYK0 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYK0_9BACT Length = 456 Score = 561 bits (1447), Expect = e-158, Method: Composition-based stats. Identities = 143/459 (31%), Positives = 233/459 (50%), Gaps = 13/459 (2%) Query: 43 LLRYDSRQF-IPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGL 101 ++ D + L + G + I + D D ++P DG+ Sbjct: 6 IMVVDDDALGREYLCETLKRGGYDVTGVGNGQQAVSRIGK-EDFDMIFMDMKMP-GMDGM 63 Query: 102 IPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNAL 161 ++ + + + L I + ++ M+ +D +S Sbjct: 64 EALEKVKGISSETVVILMTAYGTIES-AVEAMRKGAYDYIIK---PFSPDQIELLISRVN 119 Query: 162 LIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGK 221 ++L ++N A+ + + + + M+Q+ ++++ +A S +VLI GE+GTGK Sbjct: 120 ERQKLIAENKYWRSASNVDEKSEP-VYSKNSKMSQIYEQLKKIAQSKASVLIQGESGTGK 178 Query: 222 ELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNG 281 ELVA+AIH SPR P + +NCAAL ES+ ESELFGH +GA+TGA++ R G+FE+A+ G Sbjct: 179 ELVARAIHYFSPRCEKPFIRVNCAALAESLLESELFGHERGAYTGAVAKRIGRFELANEG 238 Query: 282 TLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFR 341 TL LDE+ E+S +QAKLLRVL+ + +RVG ++ +++DVR++A TNRDL +E+ G FR Sbjct: 239 TLLLDEVSEISPNIQAKLLRVLEEEEFERVGGEKTIKIDVRIVATTNRDLAKEIQKGTFR 298 Query: 342 ADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFP 401 DLF+RL+V P+ +PPLRER +D+ LLA + E+ S + A + L Y++P Sbjct: 299 EDLFYRLNVVPIHLPPLRERREDIPLLANTYLEKYSSENNSSVKSIEKRAMDYLSQYNWP 358 Query: 402 GNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATE 461 GNVREL++ + RAVV+ + G E E T+ V ++ E Sbjct: 359 GNVRELKNIMQRAVVMGSSEELGLENFTSLIDIKKSEHTMCNDSVNIKKNG-----QSIE 413 Query: 462 AFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRL 500 ++E I L + N A +L+ L + Sbjct: 414 DAEKELIFTTLEKTGGNKTKAAGLLKITTRTLRNKLNKY 452 >UniRef50_Q39SU6 Two component, sigma54 specific, transcriptional regulator, Fis family n=10 Tax=Bacteria RepID=Q39SU6_GEOMG Length = 461 Score = 561 bits (1446), Expect = e-158, Method: Composition-based stats. Identities = 152/461 (32%), Positives = 236/461 (51%), Gaps = 17/461 (3%) Query: 42 ALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGL 101 L+ D + L ++ A G L + G D ++P G Sbjct: 11 VLIVDDDVSLRRVLEYNLQEEGYEVLTAGSGEEGL-RLFEDGAPTLVVTDLKMP-GMGGF 68 Query: 102 IPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNAL 161 +E + + + + A ++ M+ +D + + AL Sbjct: 69 QLLREVKERFPDTVVIVITAFGAVEA-AVEAMKAGAYDFITK---PFNREALKLTVRKAL 124 Query: 162 LIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGK 221 ++ L +N + ++ +IG+SP M ++ + I+ VA +D VLI+GE+GTGK Sbjct: 125 DMQGLSRENRRLREELSEREEFRS-IIGISPPMEEVFRVIDRVADTDATVLITGESGTGK 183 Query: 222 ELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNG 281 ELVA+AIH S R P V +NCAA+P + ESELFGHVKGAFTGA+ ++ GKF A+ G Sbjct: 184 ELVARAIHNRSSRRAAPFVAINCAAIPRDLLESELFGHVKGAFTGAVQDKEGKFRQAEAG 243 Query: 282 TLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFR 341 TLFLDE+GEL + LQ+KLLR LQ ++Q VG +++DVRV+AATN DL E + GRFR Sbjct: 244 TLFLDEVGELPVELQSKLLRALQEKEVQPVGGAHTIKLDVRVVAATNADLEEAIAEGRFR 303 Query: 342 ADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFP 401 DLF+RLSV P+ +PPLRER +D+ LL +F + G + V S ++ Y +P Sbjct: 304 EDLFYRLSVIPVHLPPLRERKEDIPLLVRHF----AAKHGGASVTFSPEILAVMAAYGWP 359 Query: 402 GNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATE 461 GNVRELE+ + R +++ A + + E +P+ + + + E Sbjct: 360 GNVRELENTVERILIMRNADTIHPDDLPEKVRRGR------SPQRECRVINLPDEGYSLE 413 Query: 462 AFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 +RE + +AL +N+ N ++ AR L L ++ + Sbjct: 414 QLEREIVVEALERNNWNQSSAARFLRIPRHTLIYRMEKYSI 454 >UniRef50_Q7M8U4 TRANSCRIPTIONAL REGULATOR (NIFA FAMILY) n=1 Tax=Wolinella succinogenes RepID=Q7M8U4_WOLSU Length = 512 Score = 560 bits (1444), Expect = e-158, Method: Composition-based stats. Identities = 173/506 (34%), Positives = 262/506 (51%), Gaps = 22/506 (4%) Query: 4 SVDVLANIAIELQ-RGIGHQDRFQRLITTLRQVLECDASAL--LRYDSRQFIPLAIDGLA 60 + L +I++ L + F+ + L++ D S L +S+ A GL+ Sbjct: 17 ELRALYDISLALGGSVGEVKKAFEEALGLLKRHFFLDKSVYYELSEESQTLNVFASAGLS 76 Query: 61 KDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFA 120 K+ G A+A + + + + E + + +P + Sbjct: 77 KEQEFLASYKVGEGATGLAAKAREPIIVENIHQNLLFLNKSGSRNEG--EISYLAVPALS 134 Query: 121 GQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDAT--- 177 + ++G L + + D DE + ++ A+ + + + + + Sbjct: 135 QERILGVLGVSLTKHSMSDF--DEMVTILTIAASLMAQARRIHQSIHEEKKRISEEKLYY 192 Query: 178 PFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVN 237 E +KQ+++IG SP + ++ + I +A S VLI GETGTGKEL+AKAIH SPR Sbjct: 193 KEELLKQSEIIGYSPPIKRVSEIIAKIAPSSATVLIRGETGTGKELIAKAIHNYSPRKEK 252 Query: 238 PLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQA 297 P + LNCAA+PE++ ESELFGH KGAFT A R G+FE+AD GTLFLDE+G+LSL LQA Sbjct: 253 PYIKLNCAAIPENLLESELFGHEKGAFTDARETRKGRFELADGGTLFLDEVGDLSLPLQA 312 Query: 298 KLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPP 357 K+LR+LQ + +RVG + ++VDVR++AATNRDL E V G FR DLF+RL+V P+ PP Sbjct: 313 KILRILQEQEFERVGGSKTIKVDVRIVAATNRDLEEMVRMGDFREDLFYRLNVIPIFSPP 372 Query: 358 LRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVL 417 LR+RGDDVILL+ YF E+ R + L+ A LL+HY +PGN+RELE++I R V+L Sbjct: 373 LRDRGDDVILLSRYFLERFCKRHAKE-LHLTPKAEELLKHYDWPGNIRELENSIERLVLL 431 Query: 418 ARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHH 477 A + +EV+L T A E +R I +AL + H Sbjct: 432 APSESIDEEVVLSVLPGRVHGYTKEVKTRAD-----------LEELERSAIIKALKECHG 480 Query: 478 NWAACARMLETDVANLHRLAKRLGLK 503 A+ L + ++ ++ Sbjct: 481 IKLQAAKKLGITNRQIGYKIQKYEIE 506 >UniRef50_A7HBA5 Two component, sigma54 specific, transcriptional regulator, Fis family n=6 Tax=Bacteria RepID=A7HBA5_ANADF Length = 466 Score = 559 bits (1442), Expect = e-158, Method: Composition-based stats. Identities = 145/469 (30%), Positives = 227/469 (48%), Gaps = 22/469 (4%) Query: 36 LECDASALLRYDSRQFIPLAIDG-LAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSEL 94 + + + +L D + + ++ G L KD +G +E + + D ++ Sbjct: 1 MPTETTRILVVDDEEIVRESLGGWLEKDGYVVAPLPDGRSAVEKLKSERWSIMIV-DLKM 59 Query: 95 PDPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAA 154 P DGL + + K+ + + + + + M+ +D + Sbjct: 60 P-GMDGLQVLEAAKKLQPELAVVIMTAYATVDT-AVTAMKLGAYDYLVK---PFDPEELS 114 Query: 155 GALSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLIS 214 + + + L +N + A E + ++ SP M + + A S+ +L+ Sbjct: 115 IMMQKIVSQQSLVRENAVLRQALKQE-YRFRDLLSKSPAMQSVFELARTAARSNSTILVL 173 Query: 215 GETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGK 274 GE+G+GKE++A+A+H SPRA P V ++CAAL ES+ ESELFGH KG+FTGAIS R GK Sbjct: 174 GESGSGKEVLARAVHAESPRAGGPFVAVSCAALTESLLESELFGHEKGSFTGAISRRKGK 233 Query: 275 FEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREE 334 FE A GTLFLDE+G++ LQ LLRVL+ RVG + + VDVR++AATNRDLR Sbjct: 234 FEAAHGGTLFLDEVGDIGPKLQLDLLRVLEERRFHRVGGNEPIEVDVRIIAATNRDLRRA 293 Query: 335 VLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNL 394 G+FR DLF+RL+V P+ VPPLRER +D+ LL F E+ + +S A Sbjct: 294 AHEGKFREDLFYRLNVIPILVPPLRERREDIPLLVENFVERLSVEMKRRIEGVSPDAMGA 353 Query: 395 LQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQ 454 L + +PGNVREL + + R V+A T + Sbjct: 354 LMAHDWPGNVRELRNVLERGAVVATGTVIQLSDLGLPTRLEAASKPGTLA---------- 403 Query: 455 NLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 + E ++ + LA + N + AR+L D L+ ++ GL+ Sbjct: 404 ----SLEEVEKRHVAAVLAHANGNVSQSARILGIDRVTLYNKMRKYGLR 448 >UniRef50_A8GG93 Anaerobic nitric oxide reductase transcription regulator norR n=21 Tax=Gammaproteobacteria RepID=NORR_SERP5 Length = 507 Score = 559 bits (1441), Expect = e-158, Method: Composition-based stats. Identities = 333/507 (65%), Positives = 395/507 (77%), Gaps = 4/507 (0%) Query: 1 MSFSVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLA 60 M+ S+ LA+IAIELQ G+ +DRFQRLI +LR +L CDASALLR++ +QF PLAIDGLA Sbjct: 1 MTLSIQSLASIAIELQSGLTQRDRFQRLINSLRSLLRCDASALLRFEGQQFRPLAIDGLA 60 Query: 61 KDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFA 120 +DVLGRRFAL+ HPRLEAIARAG VVRFPADSELPDPYDGLIPG + LKVHAC+GLPLFA Sbjct: 61 QDVLGRRFALDAHPRLEAIARAGGVVRFPADSELPDPYDGLIPGHDQLKVHACIGLPLFA 120 Query: 121 GQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNML-PGDATPF 179 Q+LIGALT D + P QFD FSDEELRLI+ALAAGAL+NALL+E LE Q + Sbjct: 121 EQDLIGALTFDSLDPMQFDRFSDEELRLISALAAGALNNALLVEALERQALSPLASPGGS 180 Query: 180 EAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPL 239 + ++IGLS M QLK+EI IVA S+LNVLI+GETG GKELV +AIH+ S RA NPL Sbjct: 181 SPRENDEIIGLSSVMQQLKQEISIVAGSELNVLITGETGVGKELVVRAIHQGSARAANPL 240 Query: 240 VYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKL 299 VYLNCAALPESVAESELFGHVKGAFTGAI +R+GKFEMADNGTLFLDEIGELSL+LQAKL Sbjct: 241 VYLNCAALPESVAESELFGHVKGAFTGAIQHRAGKFEMADNGTLFLDEIGELSLSLQAKL 300 Query: 300 LRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLR 359 LRV+QYGD+QRVGDDR RV+VR+LAATNRDL++ + G FR DL+HRLSVFPL+VPPLR Sbjct: 301 LRVIQYGDLQRVGDDRVKRVNVRILAATNRDLKQAAVDGAFRLDLYHRLSVFPLAVPPLR 360 Query: 360 ERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLAR 419 ER D+ LLAGYFCE+CR++ GL ++ LS A + L+ YS+PGN+RELEH+I+RA +LAR Sbjct: 361 ERVSDIALLAGYFCERCRIKLGLMQLTLSVQALSALEQYSWPGNIRELEHSIYRAAILAR 420 Query: 420 ATRSGDEVILEAQHFAFPEVTLPT---PEVAAVPVVKQNLREATEAFQRETIRQALAQNH 476 A +S E+ L HF LP + + +L T+ FQR I + L + Sbjct: 421 AEQSSSELQLLPAHFTIKAGALPARIIDDALPESAIGVSLATLTQHFQRSVIEKTLVECE 480 Query: 477 HNWAACARMLETDVANLHRLAKRLGLK 503 NWAA AR LE D NLHRLAKRL +K Sbjct: 481 MNWAATARKLELDSGNLHRLAKRLNMK 507 >UniRef50_D1CFK1 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Bacteria RepID=D1CFK1_THET1 Length = 466 Score = 558 bits (1439), Expect = e-157, Method: Composition-based stats. Identities = 160/460 (34%), Positives = 241/460 (52%), Gaps = 12/460 (2%) Query: 39 DASALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPY 98 + L+ D + D L + AL+G ++ + ++ D +P Sbjct: 5 NRHILVADDDPSIRTILRDLLEDEGYQVSIALDGEQVIDQVQQS-SPDLILMDVRMPK-I 62 Query: 99 DGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALS 158 DG+ ++ V + + T+ MQ +D + ++ Sbjct: 63 DGIEVLKQLRARGMNVPMIVMTAFGNSST-TIKAMQLGAWDYITK---PFDLDDITRTIN 118 Query: 159 NALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETG 218 ++L ++ K +++IG SP M ++ K I +VAASD VLI+GETG Sbjct: 119 RFFEQQKLSTKVRG-RAEEAVAPDKTSRIIGNSPVMQEVYKTIGLVAASDATVLITGETG 177 Query: 219 TGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMA 278 TGKELVA+ IH S + PLV +NCAALPE++ ESELFGH KG+FTGA R G+FE+A Sbjct: 178 TGKELVAETIHYNSTFSQGPLVKVNCAALPETLLESELFGHEKGSFTGADRQRKGRFELA 237 Query: 279 DNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAG 338 GT+FLDEIGE++L Q KLLRVLQ + +RVG ++VD RV+AATN+ L EEV AG Sbjct: 238 HKGTIFLDEIGEMTLGTQRKLLRVLQEREFERVGGSSTIKVDTRVIAATNKKLEEEVAAG 297 Query: 339 RFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHY 398 +FR DLF+RL+V + +PPLRER +D+ LL YF ++ R + +S A +L + Sbjct: 298 KFREDLFYRLNVIHIHLPPLRERKEDIPLLVDYFLQKHRYHKDGPPASISEEAIKVLMEH 357 Query: 399 SFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLRE 458 +PGNVRELE+ I RAV+LA+ + T +++ V ++L E Sbjct: 358 DWPGNVRELENTIERAVILAQGGVITTHHL-----VFSQIRTGRNIDLSEVIDKTRSLDE 412 Query: 459 ATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAK 498 A + + I +AL + + A A +L+ + L R + Sbjct: 413 AMRIIESKIILEALEKAKGDHALAAEILDISESELKRKLR 452 >UniRef50_B5YHF3 Acetoacetate metabolism regulatory protein AtoC n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YHF3_THEYD Length = 455 Score = 557 bits (1437), Expect = e-157, Method: Composition-based stats. Identities = 136/466 (29%), Positives = 231/466 (49%), Gaps = 14/466 (3%) Query: 38 CDASALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDP 97 ++ D L + + + +I + D +LP Sbjct: 1 MKEKIIIVEDDPAMRLGMNHFLRAYGYE-ATSCDDGAKALSILDSEIFDIAIVDLKLP-G 58 Query: 98 YDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGAL 157 DGL + + G+ + + + ++ FD + + Sbjct: 59 VDGLTLLKHIKTISPQTGVIIITAFAEVKT-AVQAIKDGAFDYIAK---PFTNEELLLVI 114 Query: 158 SNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGET 217 L LE + + + + ++ S M ++ +I+ VA +D+ VLI GE+ Sbjct: 115 ERFLKFRTLEKEVKYLSELVK-KKDEFEGIVSTSSVMKEIFDKIDAVAKTDVPVLIQGES 173 Query: 218 GTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEM 277 GTGKEL+A AI + S R P + +NCAA+PE++ ESELFG+ KGAFTGA + GKFE+ Sbjct: 174 GTGKELIANAIQKQSLRKEKPYIKINCAAIPETLFESELFGYEKGAFTGATETKKGKFEL 233 Query: 278 ADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLA 337 A+ GT+F DEIG++ L+LQAKLLRV++ G + R+G ++++VR + AT+++L+E + A Sbjct: 234 ANGGTIFFDEIGDMPLSLQAKLLRVIEDGIVYRLGGKEPIKINVRCIYATSKNLKELIKA 293 Query: 338 GRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQH 397 +FR DLF+R++V P+++PPL+ER +D+ +L F + + G + +S A L Sbjct: 294 EKFREDLFYRINVMPIAIPPLKERKEDIPVLIEKFLKIFSEKYGKQNITISPSAYEALLS 353 Query: 398 YSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLR 457 Y +PGNVREL+HAI RA++L++ + + E E + + + +L+ Sbjct: 354 YDYPGNVRELKHAIERALLLSKDGVIDIKHLPE-------EFSPLSSFQKKCFISNFSLK 406 Query: 458 EATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 E E F++ I +AL + A+ L L K G++ Sbjct: 407 ECIENFEKNLIIKALQECGWKKTEAAKKLGISRKALWEKIKFYGIE 452 >UniRef50_Q1D552 Sigma-54 dependent DNA-binding reponse regulator Nla6 n=8 Tax=Cystobacterineae RepID=Q1D552_MYXXD Length = 484 Score = 557 bits (1437), Expect = e-157, Method: Composition-based stats. Identities = 157/462 (33%), Positives = 233/462 (50%), Gaps = 18/462 (3%) Query: 39 DASALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPY 98 A L D R D L+ A +GH L A +D +P+ Sbjct: 3 SARILAVDDERDTCEALADMLSAWGHKVEIAFDGHDALRK-ANEFRPDVVLSDLAMPET- 60 Query: 99 DGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALS 158 DGL + + + G+ I A ++ ++ +D L A + Sbjct: 61 DGLWLLRNLKEELPDCPVVFLTGRGTIDA-AVESIREGAYDFIVK---PLDTARLKVCID 116 Query: 159 NALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETG 218 AL ++ + + + +I S GM ++ + +E VA S +V ISGE+G Sbjct: 117 RALEKKETMREVQTLRRRLKQ--LGSSDLIAQSVGMRKVIELVEKVAPSKASVSISGESG 174 Query: 219 TGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMA 278 TGKE+V++A+H S R P + +NCA++P ++ ESELFGH +GAFTGA R G FEMA Sbjct: 175 TGKEVVSRAVHNLSLRRDKPFIAINCASIPATLIESELFGHERGAFTGADQRRPGVFEMA 234 Query: 279 DNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAG 338 GTLFLDE+GE+ + LQAKLLRVL+ G ++R+G + VDVRVL ATNRDL++E+ G Sbjct: 235 HGGTLFLDELGEIPIELQAKLLRVLEEGKLRRLGGKVEIEVDVRVLCATNRDLKQEIKNG 294 Query: 339 RFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHY 398 RFR DL+ RL+VF + +PPLRER DDV +L +F ++ R G + A +L++Y Sbjct: 295 RFREDLYFRLNVFQIHLPPLRERRDDVPILVQHFVDKFRGDSGKRVSGVHPEAMEVLKNY 354 Query: 399 SFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLRE 458 +PGN+REL +A+ RAV+L E + PE + Sbjct: 355 DWPGNIRELRNAVERAVILCDGELITREHLPPDMAGKSPER----------HTFRLPFGL 404 Query: 459 ATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRL 500 + +A +RE I +L +N +N A A +L L+ R Sbjct: 405 SLDAVEREYILGSLQRNGNNKARTAEVLGVSEKTLYNKLNRY 446 >UniRef50_A1ATK4 Two component, sigma54 specific, transcriptional regulator, Fis family n=12 Tax=Deltaproteobacteria RepID=A1ATK4_PELPD Length = 480 Score = 557 bits (1436), Expect = e-157, Method: Composition-based stats. Identities = 145/478 (30%), Positives = 230/478 (48%), Gaps = 23/478 (4%) Query: 42 ALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGL 101 L+ D + L + A +G L A+ + D ++P GL Sbjct: 6 ILVADDEESMRWVLSKALKRKGFTVDLADDGRQAL-ALIQENSYDLAILDIKMP-GMSGL 63 Query: 102 IPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNAL 161 ++ + + + + + + ++ M+ +D + + + Sbjct: 64 DLLDRIREMKSDLLVVIMTAEASMKN-AVEAMKRGAYDYITK---PFDLDVIDAIVEKVG 119 Query: 162 LIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGK 221 ++ Q L + +IG S M + K I VA SD+ +LI GE+GTGK Sbjct: 120 RAREIAGQVSLLKQELKEHYQVEKNIIGNSAAMQSIYKTIGKVADSDITILIQGESGTGK 179 Query: 222 ELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNG 281 E+VA+AIH S R P V +NCAA+P + ESELFG +GAFTGA + GKFE A+ G Sbjct: 180 EMVARAIHFNSGRLGKPFVAINCAAIPRDLLESELFGSERGAFTGASERKQGKFEQANQG 239 Query: 282 TLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFR 341 T+FLDEIG++ L LQAK+LRVLQ ++ RVG + + V+VR++AATN++L+E V FR Sbjct: 240 TIFLDEIGDMPLDLQAKILRVLQEHEVTRVGGTQSIAVNVRIVAATNQELQERVRQREFR 299 Query: 342 ADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFP 401 DL++RL+V P+++ PLRER DD+ L YF ++ + L+ A LL +S+P Sbjct: 300 EDLYYRLNVVPITLAPLRERRDDIPELVRYFLDRTCTELSIPPKQLTPEAMALLSRHSWP 359 Query: 402 GNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLR---- 457 GNVRELE+ I RAV+L+ + + E + + + +V+ LR Sbjct: 360 GNVRELENTIKRAVILSNDPMLTEADF-DGLQPEGEETAMTPQDASLEAIVEAKLRSCLT 418 Query: 458 ------------EATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 + + +R IR L + N A +L + L + L ++ Sbjct: 419 GIEKLDKSDIHAKVLQQVERPLIRFILEKTRWNQVKAADILGINRNTLRKKIHDLEIE 476 >UniRef50_B5YHK7 SasR n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YHK7_THEYD Length = 462 Score = 557 bits (1436), Expect = e-157, Method: Composition-based stats. Identities = 140/464 (30%), Positives = 225/464 (48%), Gaps = 14/464 (3%) Query: 41 SALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDG 100 + LL D + + + + I D +L + +G Sbjct: 2 TTLLIIDDEPLQREILLTILSEEGYNVYTASSLEEASKIINEILPEIILTDLKLGN-QNG 60 Query: 101 LIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNA 160 + + + + I + ++ ++ FD + L + + A Sbjct: 61 IEILNSLPEEPFRPAVIVITAFGTISS-AVNAIKQGAFDYLTK---PLDKEVLLVTIRKA 116 Query: 161 LLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTG 220 L +N++ +E K +IG S M Q+ ++ ++ VLI GE+GTG Sbjct: 117 EERMNLIKENLMLRKEL-YEKFKMDGIIGKSRKMLQVLDIVKKATPTNATVLIYGESGTG 175 Query: 221 KELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADN 280 KEL+A+AIH SPR P + +NCAA+P+++ ESELFG+ GAFTGA + + G E AD Sbjct: 176 KELIARAIHYNSPRKDKPFIAINCAAIPDTLIESELFGYEPGAFTGANTRKIGLIESADK 235 Query: 281 GTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRF 340 GTLFLDEI E+ L+ Q+KLLRVLQ +++++G +VDVR++AATN++L E+V +F Sbjct: 236 GTLFLDEIAEIPLSTQSKLLRVLQDKEVRKIGSKDTNKVDVRIIAATNKNLSEQVEKNKF 295 Query: 341 RADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSF 400 R DL++RL V + +PPLRER +D+ L +F E+ G + A L +YS+ Sbjct: 296 REDLYYRLKVITVEIPPLRERKEDIPDLVHFFIEKYSKEFGKRVNGIEEKALEALLNYSW 355 Query: 401 PGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREAT 460 PGN+RELE I RA+++ + I + P+ +P N Sbjct: 356 PGNIRELESVIERAIIICEKDKITFNDIQDELRVITPKNLF----DIDIPDEGINY---- 407 Query: 461 EAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLKD 504 E ++E I++AL +++ A AR+L K+ GL D Sbjct: 408 EELEKELIKKALIKSNFVIAKAARLLGMSYDTFWYRLKKFGLSD 451 >UniRef50_B8IZ33 Two component, sigma54 specific, transcriptional regulator, Fis family n=15 Tax=Desulfovibrionales RepID=B8IZ33_DESDA Length = 459 Score = 556 bits (1434), Expect = e-157, Method: Composition-based stats. Identities = 146/464 (31%), Positives = 222/464 (47%), Gaps = 10/464 (2%) Query: 39 DASALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPY 98 + + +L D + L + L +D A+ A +V D ++P Sbjct: 3 EKAHILIIDDEKNYLLVLQTLLEDEGYTVTAISDPETALAFLDESEVDVVVTDMKMPK-V 61 Query: 99 DGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALS 158 G + K + + + I + ++ M+ FD + ++ Sbjct: 62 TGRQVLERVKKSWPYIPVLIMTAFGSIES-AVELMKYGAFDYITK---PFSNDELLLSIH 117 Query: 159 NALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETG 218 NA+ + + Q L + +++G S + + +E A S VLI+GE+G Sbjct: 118 NAVELARAHRQYRLL-QEVMEDRYGVHKIVGRSRAIRDVLIMVERAAPSRSTVLITGESG 176 Query: 219 TGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMA 278 TGKEL+A+AIH SPR NP V +NC AL V ESELFGH KG+FTGA++ R G+FE A Sbjct: 177 TGKELIARAIHYTSPRKDNPFVSVNCMALNPGVLESELFGHEKGSFTGAVAMRRGRFEQA 236 Query: 279 DNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAG 338 D GTLFLDEI EL+ LQ KLLRVLQ +RVG + VD+RV+AATN+DL V G Sbjct: 237 DGGTLFLDEIAELTPDLQVKLLRVLQERRFERVGGGEEIEVDIRVVAATNKDLAAMVEKG 296 Query: 339 RFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHY 398 FR DL++RL+V + +PPLRER +D+ LL +F ++ + S A N L Y Sbjct: 297 TFRDDLYYRLNVVQIPLPPLRERREDIPLLVAHFVDKVCTDNTMPAKTFSTEALNYLTGY 356 Query: 399 SFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLRE 458 +PGN+R+LE+ + +VL T + + + + V+ +L + Sbjct: 357 EWPGNIRQLENVVESCLVLVPGTVINVDNLPAEIR----DEESQFKSAVDLLPVQLDLAD 412 Query: 459 ATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 E + IR+AL + A L + L K+ + Sbjct: 413 TLEKIEAALIRRALVRADLVQVKAAEYLGISKSLLQYKLKKYAI 456 >UniRef50_Q1PZT5 Strongly similar to sigma 54 response regulatory protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZT5_9BACT Length = 448 Score = 556 bits (1434), Expect = e-157, Method: Composition-based stats. Identities = 156/467 (33%), Positives = 230/467 (49%), Gaps = 21/467 (4%) Query: 36 LECDASALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELP 95 + + L D F + L + G ++ + + D D +P Sbjct: 1 MSKKPTILFTDDEGTFRNIMSKELDRMGYNVTCCASGQETIKNM-QERDYDVAILDMNMP 59 Query: 96 DPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAG 155 +G+ ++ + + + GQ I + ++ +D + Sbjct: 60 V-MNGIETLKKVKTIEPTTEVIILTGQGSIEN-AVQAIKLGAYDYLTK---PCQLKELDL 114 Query: 156 ALSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISG 215 L AL +L +N + K + MIG SP + + K I+ A SD+ VLI G Sbjct: 115 LLQRALEKRKLSRENFHLKT-LVHDVQKPSSMIGNSPAIKAVFKMIDKTAPSDVTVLIQG 173 Query: 216 ETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKF 275 E+GTGKEL AK IH+ S RA P V +NCA L ES+ ESELFGHVKGAFTGA +R G F Sbjct: 174 ESGTGKELAAKMIHQYSKRADKPFVIVNCATLQESLLESELFGHVKGAFTGAAESRVGLF 233 Query: 276 EMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEV 335 E+A+ GTLFLDEIGEL++ QAKLLRV+Q G+I+RVGD+R + VD R++AAT+++L EV Sbjct: 234 EIAEGGTLFLDEIGELTVNTQAKLLRVIQSGEIRRVGDNRVITVDARIIAATHKNLPLEV 293 Query: 336 LAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLL 395 GRFR DL+ RL+V L +P LRER DD+ L +F ++ G + + A + + Sbjct: 294 KEGRFREDLYFRLNVITLRLPSLRERKDDLTALIQHFLQKFCK--GERTMDMHPEALHAM 351 Query: 396 QHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQN 455 Y +PGN+RELE+ I R VVLA E + + E E+ Sbjct: 352 TLYDWPGNIRELENTIERTVVLADGNIISIEELPDNIRGRTYEHYGKNGEI--------- 402 Query: 456 LREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 A ++ I Q L + + + A+ L + L+ K + Sbjct: 403 ---ALSEVEKNHIIQVLKEKNWHKPLAAKTLGISLKTLYNKMKMYNI 446 >UniRef50_Q1JZC1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JZC1_DESAC Length = 455 Score = 556 bits (1434), Expect = e-157, Method: Composition-based stats. Identities = 147/460 (31%), Positives = 226/460 (49%), Gaps = 9/460 (1%) Query: 43 LLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLI 102 +L D + + + L + V + I + +D ++P G+ Sbjct: 4 ILIVDDEKNYRIVLGQLLESVGHHVTRADNPYAALDILSGEQIDLIISDLKMPR-MSGID 62 Query: 103 PGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALL 162 + V + + L M+ FD + AL Sbjct: 63 FLRHVNDEIGPVPFIMLTAYATVQT-ALQAMKIGAFDYLLK---PFDNEEMLLTVDKALD 118 Query: 163 IEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKE 222 +L+++N L + ++G SP M L+ +I VA + ++LI+GE+GTGKE Sbjct: 119 YSKLQNENWLLRRELEQNRDRT--LVGNSPAMESLRNQIAQVAPAKTSILITGESGTGKE 176 Query: 223 LVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGT 282 LVA+A+H SPR+ LV +NCAA E++ ESELFGH +GAFTGA+ + G E++D GT Sbjct: 177 LVAQALHRLSPRSNKALVSINCAAFAENLLESELFGHERGAFTGALERKKGLMEVSDGGT 236 Query: 283 LFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRA 342 LFLDEIGE L LQ KLLRVLQ +RVG + D+R++AAT+R+L + + G FR Sbjct: 237 LFLDEIGEFPLNLQPKLLRVLQEKTFRRVGGTAEISSDIRIIAATHRNLEQMITEGTFRE 296 Query: 343 DLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPG 402 DL++RL+V L +PPLR R +D+ LL+ F E+ G LS+ A++ L HY +PG Sbjct: 297 DLYYRLNVVSLHLPPLRHRREDIPLLSQLFLERLSRDMGCPLPQLSSQAQHDLYHYEWPG 356 Query: 403 NVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEA 462 NVREL++ + R ++ + + H P + A ++Q L E E Sbjct: 357 NVRELQNILERGLLFCDGPTLEQNHLPQQFHSQAPHHNGCSETAAMP--LQQPLPEHLET 414 Query: 463 FQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 +++ I+ AL A A +L +NL K+ L Sbjct: 415 IEQKLIQAALIDARGVQAKAAELLGISRSNLQYKLKKYHL 454 >UniRef50_C4LCC7 Transcriptional regulator, NifA subfamily, Fis Family n=22 Tax=Gammaproteobacteria RepID=C4LCC7_TOLAT Length = 521 Score = 556 bits (1433), Expect = e-157, Method: Composition-based stats. Identities = 250/513 (48%), Positives = 338/513 (65%), Gaps = 16/513 (3%) Query: 6 DVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLAKDVLG 65 IA+ L + + +FQRL+ + VL CDA AL++ + + +P+A GLA +++G Sbjct: 8 HAWLQIAVGLSTSMPGELQFQRLVQAICDVLPCDAVALMQLNEGELVPVAAMGLAPELIG 67 Query: 66 RRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESL--KVHACVGLPLFAGQN 123 +RF HPRL+AI + + VRFPAD+ELPDP+DG + VH+C+G L+ + Sbjct: 68 QRFLPAEHPRLQAILQEREPVRFPADAELPDPFDGWLAVDRERTADVHSCMGCSLYVDRQ 127 Query: 124 LIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLE----SQNMLPGDATPF 179 L+G LTLD + P +FD D + AALAA L N LI LE Q L + Sbjct: 128 LVGVLTLDALAPGRFDDVDDMTVAAFAALAAATLRNVALIRALEHGRAQQQELAQELVRD 187 Query: 180 EAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPL 239 ++ ++IG SP M +L++EI++VA++DL VLI+GETGTGKELVA+ +H S R+ L Sbjct: 188 ARRREGELIGNSPLMRKLREEIDMVASTDLAVLITGETGTGKELVARTLHARSRRSEQAL 247 Query: 240 VYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKL 299 V++NCAALPE +AESELFGHVKGAFTGA SNR+GKFE+AD GTLFLDEIGEL L+LQAKL Sbjct: 248 VHVNCAALPEQIAESELFGHVKGAFTGATSNRAGKFELADGGTLFLDEIGELPLSLQAKL 307 Query: 300 LRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLR 359 LR LQ G+IQRVG D+ LRV+VR++AATNRDL +EV GRFR+DL+HRL V+P++VPPLR Sbjct: 308 LRALQQGEIQRVGSDKLLRVNVRLIAATNRDLEQEVADGRFRSDLYHRLKVYPIAVPPLR 367 Query: 360 ERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLAR 419 E D+ L+ YF +Q R R GL ++ L A +Q Y +PGNVRELEH + RA + A Sbjct: 368 EHIADLDTLSSYFLDQARTRLGLRQIGLHPQALLAMQAYDWPGNVRELEHLLMRASLKAT 427 Query: 420 ATRSGDEVILEAQHFAFPEVTLPTPEVAAVP---------VVKQNLREATEAFQRETIRQ 470 + G ++ A+H P E A +Q LR+A +++Q+E I Q Sbjct: 428 RHKEGRP-LILAEHLDLPVPVQQLTESVAAEESSTPVIALSAEQGLRDAVDSYQKELILQ 486 Query: 471 ALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 +L N NW+A AR L+TD ANL+RLA+RLG+K Sbjct: 487 SLEANQGNWSATARQLKTDRANLNRLAQRLGIK 519 >UniRef50_Q6ARB9 Probable two-component system response regulator (Ntr family) n=1 Tax=Desulfotalea psychrophila RepID=Q6ARB9_DESPS Length = 443 Score = 555 bits (1431), Expect = e-156, Method: Composition-based stats. Identities = 153/462 (33%), Positives = 230/462 (49%), Gaps = 22/462 (4%) Query: 42 ALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGL 101 LL D + + L + A +G L + + + D ++P DGL Sbjct: 4 ILLVDDDKGHRTMLKVNLGELGYQVITAGDGDEVLAKLTKN-KIDLILLDMKMPR-IDGL 61 Query: 102 IPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNAL 161 + + + + + + + ++ M+ FD + + A+S AL Sbjct: 62 ATLSLLSQQNNRIPVIVITAFSSMEN-AIEAMKKGAFDYVTK---PVDIDNLHIAISKAL 117 Query: 162 LIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGK 221 + L P K ++IG S M +L +I ++A SD +L+SGE+GTGK Sbjct: 118 HQK---ISPPLSPGTEPQADSKFPEIIGESAPMQELFSQISLIAPSDATILLSGESGTGK 174 Query: 222 ELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNG 281 ELVA AIH S R L+ +NCAAL E++ ESELFGH GAFTGA + G FE AD G Sbjct: 175 ELVATAIHRHSKRKEGALIRINCAALHENLLESELFGHELGAFTGAAKQKKGLFERADKG 234 Query: 282 TLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFR 341 TLFLDEIG++SL Q K+LRVLQ G+ +RVG + ++V+VR++AA++R+L + + G FR Sbjct: 235 TLFLDEIGDMSLTTQVKILRVLQEGEFERVGGNDSIKVNVRIIAASHRNLEKLIEEGTFR 294 Query: 342 ADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFP 401 DLF RLSV PL +P LRER D+ +LA +F + S A +LL Y +P Sbjct: 295 QDLFFRLSVVPLHLPALRERLVDIPILANFFLSLYNKKNRKDIKGFSQEALDLLMEYPWP 354 Query: 402 GNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATE 461 GN+RELE++I R V+L + + L + R+ Sbjct: 355 GNIRELENSIERGVILCLGEQITAHELPPQFFRNRSPGELSS-------------RDTLR 401 Query: 462 AFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 ++ I+QALA++ N +A A+ L L + GL+ Sbjct: 402 DVEKRAIQQALARSGFNKSATAKQLGIARQTLLNKIRDYGLE 443 >UniRef50_B2S3B3 Response regulatory protein n=28 Tax=Spirochaetales RepID=B2S3B3_TREPS Length = 458 Score = 555 bits (1430), Expect = e-156, Method: Composition-based stats. Identities = 143/459 (31%), Positives = 225/459 (49%), Gaps = 17/459 (3%) Query: 42 ALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGL 101 ++L D + I + +D F E IA GD+ D ++P G Sbjct: 4 SILVLDDEKNIREGLQMALEDEGYEVFTAEDGNTGVEIALKGDIDLIITDLKMPR-MSGE 62 Query: 102 IPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNAL 161 + Q V + + + G + ++ M +D + L + + AL Sbjct: 63 LVLQHVHAVLPDIPIIILTGHGTVEN-AVEAMHKGAYDFLTK---PLDLNRLSLLVRRAL 118 Query: 162 LIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGK 221 +L Q+ ++G SP M ++ ++ AAS +VLI+GE+G GK Sbjct: 119 QNRELIVQHRELIKQI-GNRTSFENIVGESPAMNKVFDMVKKAAASKASVLITGESGVGK 177 Query: 222 ELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNG 281 EL+A AIH SPR PL+ ++CA+ E V ESELFGH +GAFTGA++ G+FE+A G Sbjct: 178 ELIANAIHNLSPRKAKPLIKVHCASFAEGVLESELFGHERGAFTGAVNRMKGRFELAHEG 237 Query: 282 TLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFR 341 ++FLDEIGE+S+A+Q KLLRVLQ +RVG ++VDVRV++ATNR+L EE+ FR Sbjct: 238 SMFLDEIGEVSMAVQIKLLRVLQERSFERVGGRETIKVDVRVISATNRNLLEEIKRNLFR 297 Query: 342 ADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFP 401 DL++RL+V + VP LRER +D+ LL F ++ G + A++ L Y +P Sbjct: 298 EDLYYRLNVVHIHVPALRERKEDLPLLIATFLKEIAEENGKKITSIDPQAQSALHAYDWP 357 Query: 402 GNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATE 461 GN+R+L + I AV+++ E + E + ++ + + E Sbjct: 358 GNIRQLRNCIESAVIMSSGPVIHIEDLSEPIR-----------SLGETSSIRIPIGVSME 406 Query: 462 AFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRL 500 ++E I Q L N + A +L L+ + Sbjct: 407 DAEKEIILQTLEAQKGNKSKTADVLGIGRKTLYLKLDQY 445 >UniRef50_B3DZ60 DNA-binding response regulator, NtrC family (Contains REC, AAA-type ATPase, and DNA-binding Fis domains) n=4 Tax=Verrucomicrobia RepID=B3DZ60_METI4 Length = 464 Score = 554 bits (1429), Expect = e-156, Method: Composition-based stats. Identities = 151/462 (32%), Positives = 218/462 (47%), Gaps = 13/462 (2%) Query: 43 LLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLI 102 L+ D ++ + L ++ + AI + AD L G Sbjct: 11 LIIEDEKRTRMGLVMALGEE--FDTYEASDLSSAMAILENEPIDIVLADIRLGKE-SGFE 67 Query: 103 PGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALL 162 ++ + + ++ ++ +D L L Sbjct: 68 ILRKVKSLPFPPACLFMTAYGSVEN-AVEAIKMGAYDYIPK---PLDLEKLEITLKRIYQ 123 Query: 163 IEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKE 222 ++E +N+ ++ ++IG S M + ++I+ VA+S VL+ GE+GTGKE Sbjct: 124 SRKVEVENLQLKRQLNWK-YGLEKIIGNSAAMKAVFEKIKQVASSKATVLLEGESGTGKE 182 Query: 223 LVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGT 282 LVA AIH+ SPR P V ++CAAL + ESELFGH KGAFTGAI R G+FE A GT Sbjct: 183 LVAHAIHQLSPRKNFPFVVVHCAALSPQLLESELFGHEKGAFTGAIERRIGRFEEAARGT 242 Query: 283 LFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRA 342 LFLDEIGE+ L Q KLLR L IQRVG ++ + VDVRV+AATN++L + V G+FR Sbjct: 243 LFLDEIGEIDLPTQVKLLRALGEKTIQRVGSNKVVAVDVRVIAATNKNLEKMVEEGKFRE 302 Query: 343 DLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPG 402 DLF RL+V + +PPLRER +D+ LLA F + G LS A +L Y +PG Sbjct: 303 DLFFRLNVVRIVMPPLRERKEDIPLLAQAFLAEFAAENGKKIDRLSPEAMKILLEYDWPG 362 Query: 403 NVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEA 462 NVREL+ AI VVL + + E P ++ P ++ P + Sbjct: 363 NVRELKMAIEHGVVLCQGEEIRPRDLPERIRIPRPLLSAPISVESSEPDCFN-----LKE 417 Query: 463 FQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLKD 504 ++ I AL + A+ L L R K+ L D Sbjct: 418 AEKRLILHALRVCQGKKTSAAKKLGISRKTLQRKIKQFELTD 459 >UniRef50_B4D0Z8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D0Z8_9BACT Length = 466 Score = 553 bits (1427), Expect = e-156, Method: Composition-based stats. Identities = 148/458 (32%), Positives = 224/458 (48%), Gaps = 9/458 (1%) Query: 41 SALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDG 100 + +L D + I + ++ + A + D + D G Sbjct: 2 ARILIIDDDPAMVSVISDICQERGHQTVAYASGQKALESLAVHAPQLVITDLRM-DKVGG 60 Query: 101 LIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNA 160 L +E +V + L + L+ M+ +D + + A Sbjct: 61 LDILRECREVLPQTPVILITAYKTVET-ALEAMKLGAYDYITK---PFKVDELQLTIQRA 116 Query: 161 LLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTG 220 L + L +N E + +IG S M ++ I VA +D +LI GE+GTG Sbjct: 117 LDNQSLVRENRNLRQIVK-EKYRFENIIGTSTKMQEIYNLIAKVADTDSTILIQGESGTG 175 Query: 221 KELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADN 280 KELVA+A+H S R P V +NC+ALPE++ ESELFGH KG+FTGA+ ++ G FE A+ Sbjct: 176 KELVARALHFNSTRQHQPFVAINCSALPENLLESELFGHKKGSFTGAVQDKIGLFEEAEG 235 Query: 281 GTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRF 340 GT+FLDE+ ++ LQ KLLRVLQ I+RVGD + + ++VRVLAATN L +++ G F Sbjct: 236 GTIFLDEVNSMAQPLQTKLLRVLQERQIRRVGDTKSVPINVRVLAATNEALGDKIKGGNF 295 Query: 341 RADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSF 400 R DL++RL+V P+ +P LRER DD+ LL +F ++ + G + A +L Y + Sbjct: 296 REDLYYRLAVIPVEMPALRERPDDIPLLVSHFLQKNAAQTGTEAKKIDPKAIEMLAKYRW 355 Query: 401 PGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREAT 460 PGNVRELE+A+ RA L + T P E + V Q L E Sbjct: 356 PGNVRELENAVERACALCDDALIRTTDLPPQV---IRHATAPPVEHSGTLPVGQTLDEYI 412 Query: 461 EAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAK 498 +R I + + N ++ A+ML +A L+R + Sbjct: 413 REQERRYIEETIKFNGNSREKAAKMLGISMATLYRKLE 450 >UniRef50_A7HIM1 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Myxococcales RepID=A7HIM1_ANADF Length = 495 Score = 553 bits (1426), Expect = e-156, Method: Composition-based stats. Identities = 153/464 (32%), Positives = 239/464 (51%), Gaps = 10/464 (2%) Query: 41 SALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDG 100 + +L D + + + A+ G A R D + P DG Sbjct: 29 ARILIADDHDAVREGMAIALSRLGHDVLAVRGGAEAIAAYRKKPADVVVTDLRM-VPVDG 87 Query: 101 LIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELR-LIAALAAGALSN 159 + + ++ + + + I A+ ++ M+ D ++ A ++ Sbjct: 88 IEVVRRLRELDPDATVLVVSAHGTI-AVAVEAMREGAIDFIEKPFSPDVLRARVEKSIEI 146 Query: 160 ALLIEQLESQNMLPGD-ATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETG 218 A + + + ++G S M ++ ++ VA++ VL+ GE+G Sbjct: 147 ARERKGARTARARAEALEEDLGRDRAHGLVGSSEPMRRVLDQVRKVASTGATVLVLGESG 206 Query: 219 TGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMA 278 TGKELVA+AIH+ASPR P V ++CAA+PE + ESELFGH KGAFTGAI + G+FE+A Sbjct: 207 TGKELVARAIHDASPRREQPFVSISCAAIPEGLLESELFGHEKGAFTGAIRRKLGRFELA 266 Query: 279 DNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAG 338 + GTLFLDE+GE+ A+Q KLLRVLQ +RVG + + VDVRV++ATNR+L + V +G Sbjct: 267 NGGTLFLDEVGEIPHAVQVKLLRVLQERQFERVGGEETVEVDVRVVSATNRNLAQMVESG 326 Query: 339 RFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHY 398 RFR DL++RL+V P+ +PPLR+R DV LA +F + R + L+ A LL+ + Sbjct: 327 RFREDLYYRLNVVPILLPPLRDRPGDVEELARFFVARLAPRMSRAVTGLAPEALELLRRH 386 Query: 399 SFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLRE 458 +PGNVRELE+ I +A+V A + E A P +LP VP ++L + Sbjct: 387 RWPGNVRELENVIEQALVFAEGELVRPRDLPEGVRKAPPAPSLP------VPSGDRSLTD 440 Query: 459 ATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 E +R+ I A + A AR+L + L+ ++ G+ Sbjct: 441 ILEDLERQLILAAYEKARGVKAETARLLGIKPSALYYKLEKYGI 484 >UniRef50_B9M610 Two component, sigma54 specific, transcriptional regulator, Fis family n=14 Tax=Deltaproteobacteria RepID=B9M610_GEOSF Length = 465 Score = 553 bits (1425), Expect = e-156, Method: Composition-based stats. Identities = 158/467 (33%), Positives = 238/467 (50%), Gaps = 12/467 (2%) Query: 38 CDASALLRYDSRQFIPL-AIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPD 96 + + D + I L L G L + + + D ++PD Sbjct: 6 MSETRIFICDDEEGILKYMKKLLESQGLVVETFTSGKMLLARLQQGPNADLLLQDVKMPD 65 Query: 97 PYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGA 156 DGL QE K+ + + + I A ++ M+ +D + G Sbjct: 66 -MDGLQILQEVKKLRPGLPVVIMTAFGTIDA-AVEAMKLGAYDYVTK---PFPKEKILGV 120 Query: 157 LSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGE 216 L N L E L +N + + ++ S ++ + VAAS+ N+LI GE Sbjct: 121 LENVLERELLRKENQQLKEELGKVTLT-DAIVFASDRFREVYELTLEVAASEANILILGE 179 Query: 217 TGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFE 276 +GTGKEL+A AIH S R ++ +NCAAL +++ ES+LFGHV+GAFTGA +N+ G E Sbjct: 180 SGTGKELIAGAIHRHSKRRGRRILSINCAALSDTLLESQLFGHVRGAFTGATTNQKGLLE 239 Query: 277 MADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVL 336 AD+GTLF+DEIG++SL LQAKLLRV+Q GD VG R +VD+R +AATN++L +EV Sbjct: 240 EADSGTLFMDEIGDMSLMLQAKLLRVIQEGDFIPVGATRAKKVDIRFVAATNKNLEKEVA 299 Query: 337 AGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQ 396 GRFR DL++RL+V + +PPLRER +D+ LA +F + R + A +L+ Sbjct: 300 EGRFREDLYYRLNVISIPLPPLRERKEDIEPLARHFLRKYNQRMNKEVDRFTREALDLML 359 Query: 397 HYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNL 456 YS+PGN+RELE+ + RAV+LAR+ + + + + T + + Sbjct: 360 GYSWPGNIRELENVVERAVILARSGVVTTDHLP-----MWKKNVASTAATGPASALSSHQ 414 Query: 457 REATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 + E +RE IRQ LA+ + + A +L L R GLK Sbjct: 415 LVSLENVEREHIRQTLARTGFHKSRTAEILGISRKTLDRKIAEFGLK 461 >UniRef50_Q1Q0T6 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q0T6_9BACT Length = 472 Score = 553 bits (1425), Expect = e-156, Method: Composition-based stats. Identities = 137/465 (29%), Positives = 235/465 (50%), Gaps = 8/465 (1%) Query: 42 ALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGL 101 L+ D + + + + A + D ++P + + Sbjct: 14 VLIADDEERMRRVLTMIFEEMKDVKVVAGNSFEDVLRYLDKERFHLLITDLKVP-GSNSI 72 Query: 102 IPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNAL 161 + A + + + +G +D M+ FD + A+ AL Sbjct: 73 DFIRAVKNKVADIPIIVLTAYGSVG-FAIDIMKEGVFDYL---VAPFDNDILELAVKRAL 128 Query: 162 LIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGK 221 + L +N A + +IG SP + + + + V +D VL++GE+GTGK Sbjct: 129 KVSSLTIENKNLRKALELQ-YNFGNIIGNSPSVVETLRLVGEVTRTDSTVLVTGESGTGK 187 Query: 222 ELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNG 281 ELV++AIH S R P V LNCAA+PE++ ESELFG+ KGAFTGA + G+FE+A G Sbjct: 188 ELVSRAIHYNSDRKCGPFVALNCAAIPENLLESELFGYEKGAFTGAEKTKKGRFELAAGG 247 Query: 282 TLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFR 341 T FLDEI E+S A+QAK+LR+++ +++R+G ++VDVR++ ATNRDL + V G+FR Sbjct: 248 TFFLDEISEMSAAVQAKVLRIIESKELERLGGTDTIKVDVRIICATNRDLVQMVKEGKFR 307 Query: 342 ADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFP 401 DL++R+SVFP+ +P LRER D+I L+ +F + G + +VLS+ +L + + Sbjct: 308 DDLYYRISVFPIMLPALRERSGDIIPLSKHFVNHFSAKMGKTPIVLSSEVEKILIKHKWE 367 Query: 402 GNVRELEHAIHRAVVLARATRSGDEVILEA--QHFAFPEVTLPTPEVAAVPVVKQNLREA 459 GN+REL++ I RAV+L + E + + + PE+ + +V + Sbjct: 368 GNIRELQNIIERAVILCKNGVIRTEHLPTSIVHGYTPPELNENISQNNSVNFDIPPNGLS 427 Query: 460 TEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLKD 504 + +++ + +AL ++ +N A++L ++ G+ + Sbjct: 428 LDDLEKQLVAKALERSKNNITKAAKLLGLTRGTFRYRLQKYGISN 472 >UniRef50_D2QGL7 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Flexibacteraceae RepID=D2QGL7_9SPHI Length = 488 Score = 552 bits (1424), Expect = e-156, Method: Composition-based stats. Identities = 159/493 (32%), Positives = 240/493 (48%), Gaps = 49/493 (9%) Query: 41 SALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDG 100 + L+ D I + + L + A +G +E A D +P DG Sbjct: 12 TILIVDDVPNNISVLYETLTRSGYKVLVARDGKSAIEQATFA-LPDLILLDIMMP-GMDG 69 Query: 101 LIPGQESLKVHACVGLPLFAGQNLIGAL-TLDGMQPDQFDVFSDEE-------------- 145 + + A +P+ L + ++G D + Sbjct: 70 FETCRRLKQNPATQPIPVLFMTALSETIDKVNGFNMGAVDYITKPFQLQEVLSRIHTHLS 129 Query: 146 -------LRLIAALAAGALSNA-----LLIEQLESQNMLPGDATPFEAVKQTQMIGLSPG 193 + + A AL+ A L +QL+++N + + +++ S Sbjct: 130 LRRLQQSMEQLVAERTQALTKALAEVERLKDQLQAENTYLREEIK-QTKNFDEIVTQSKA 188 Query: 194 MTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAE 253 ++ + +E VA ++ VLI GE+GTGKEL+A+A+H S R PLV +NCAALP ++ E Sbjct: 189 FQKVLRSVEQVAPTNTTVLILGESGTGKELLARAVHNLSSRKNKPLVKINCAALPATLIE 248 Query: 254 SELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGD 313 SELFGH KGAFTGA + + G+FE+AD GT+FLDEIGE+ L LQAKLLRVLQ G+ +RVG Sbjct: 249 SELFGHEKGAFTGATAQKVGRFELADGGTIFLDEIGEMPLDLQAKLLRVLQEGEFERVGS 308 Query: 314 DRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFC 373 + ++V+VRV+AATNRDL E GRFR DL++RLSVFP+ PLR R +D+ LL +FC Sbjct: 309 TKTMKVNVRVIAATNRDLEIESAEGRFREDLYYRLSVFPIVSLPLRTRKEDIPLLVRHFC 368 Query: 374 EQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQH 433 + G + + A + L Y +PGN+RELE+ + RA++++ L + Sbjct: 369 AKHGADMGKTIDTIPATVLDTLTDYHWPGNIRELENLVQRALIMSPGRTLVIGDWLRKKP 428 Query: 434 FAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWA---ACARMLETDV 490 A + TL E +R I L H + AR+L+ Sbjct: 429 LANQKATL----------------MTMEEAERAHIISVLELTHWKVSGDNGAARLLDMIP 472 Query: 491 ANLHRLAKRLGLK 503 L K+LG++ Sbjct: 473 TTLDSRMKKLGIR 485 >UniRef50_A5G9U3 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Deltaproteobacteria RepID=A5G9U3_GEOUR Length = 466 Score = 552 bits (1424), Expect = e-155, Method: Composition-based stats. Identities = 152/456 (33%), Positives = 225/456 (49%), Gaps = 9/456 (1%) Query: 38 CDASALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDP 97 D++ +L D + + + F DV D +P Sbjct: 1 MDSARILIADDDKKTRDFVAAFLSYKGYQVFQASDGQDALEKIELNDVHMVITDIMMPR- 59 Query: 98 YDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGAL 157 +GL ++ + + ++ +T + ++ F E + Sbjct: 60 VNGLEFIKKLKAMRPEIVTIAYSAFANFE-MTANLLKAGAFFYL---EKPFNLEELETHV 115 Query: 158 SNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGET 217 L + L+ Q+ ++ +IG S M L + IE VA SD VLI GE+ Sbjct: 116 KRGLEHQALQRQSFKSKPCIKNRSL-LNNIIGESDRMLSLFEMIEKVAGSDSTVLIQGES 174 Query: 218 GTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEM 277 GTGKELVA+AIH+ S RA V +NCAA+P+ + ESELFGHVKG+FTGA++ R G+FEM Sbjct: 175 GTGKELVARAIHDLSNRATKNFVPVNCAAIPDDLLESELFGHVKGSFTGAVATRIGRFEM 234 Query: 278 ADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLA 337 AD GTLFLDEIG++ LQ KLLRVLQ +++ VG R +VDVR++AATN++L V + Sbjct: 235 ADRGTLFLDEIGDMKPNLQVKLLRVLQNKELEPVGAARTKKVDVRIIAATNQNLEHLVAS 294 Query: 338 GRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQH 397 FR DL++RLSV P+++PPLRER D+ LL F E+ + ++L + Sbjct: 295 KIFREDLYYRLSVIPITLPPLRERKTDIPLLLNNFLEKFNRNKQRKVQSFDKNTMDILCN 354 Query: 398 YSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLR 457 + +PGNVRELE+ + R V+L + + + E + P E +P L Sbjct: 355 FDWPGNVRELENLVERLVILKGSGTITFQDLPEKYRG---IKSAPKSERLTLPDTGFCLN 411 Query: 458 EATEAFQRETIRQALAQNHHNWAACARMLETDVANL 493 A E F+ + I QAL + N A +L L Sbjct: 412 SAVEDFENQLILQALEKTGGNKKEAATLLNLKRTTL 447 >UniRef50_Q1PYM7 Similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYM7_9BACT Length = 469 Score = 552 bits (1424), Expect = e-155, Method: Composition-based stats. Identities = 142/468 (30%), Positives = 224/468 (47%), Gaps = 12/468 (2%) Query: 41 SALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDG 100 L+ D + L A LE + D LP+ +G Sbjct: 6 IILIVDDEETIRLSVREFLDAQGYEAIAAGSCEEALEKM-DTFMPDLILLDLRLPN-ING 63 Query: 101 LIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNA 160 + ++ + + + G + + ++ M+ +D E + A Sbjct: 64 VELIEKIKEKDPNALMVVMTGYGSVDS-AVEVMRLGAYDYL---EKPFKLDRLRSVVEKA 119 Query: 161 LLIEQLESQNMLPGDATPFEAVKQTQMI-GLSPGMTQLKKEIEIVAASDLN-VLISGETG 218 L + L + + + + +I G SP M ++ I+ VA S VLI GE+G Sbjct: 120 LRRQGLRQEVLEIKEKQWTFDEESDGIIIGNSPQMKEIYSLIKQVAKSSSTTVLIQGESG 179 Query: 219 TGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGA-ISNRSGKFEM 277 TGKELVA+A+H S R V +NCAAL ES+ E+ELFG+ KGAFTGA + + G FE+ Sbjct: 180 TGKELVARAVHRLSARKSGRFVDINCAALTESLLEAELFGYEKGAFTGAATAGKPGLFEI 239 Query: 278 ADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLA 337 AD GT+FLDEIGE+ + LQAKLLR+LQ +RVG + +++DVR++A+TNR+L EE+ + Sbjct: 240 ADKGTVFLDEIGEMGVLLQAKLLRILQERQFKRVGGIQDIKIDVRIIASTNRNLEEEIAS 299 Query: 338 GRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQH 397 G FR DL++RL V P+ VPPLRER +D++LL YF + G + + +L Sbjct: 300 GNFRKDLYYRLKVLPIYVPPLRERREDIMLLVKYFIHKYNNEFGKNICDIPPDTERILLE 359 Query: 398 YSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPV---VKQ 454 Y +PGN+REL++ + R V++A + + + +L V Sbjct: 360 YGWPGNIRELKNVVERGVLIANGSALSPKYVANISVGKKESESLAGITVDGNTDCVSSDG 419 Query: 455 NLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 + +++ I L + AR+L + L+ K G+ Sbjct: 420 LDARSLAFMEKQHIENVLKETSWRRTEAARVLGINRTTLYNKIKEYGI 467 >UniRef50_C6E9E0 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Deltaproteobacteria RepID=C6E9E0_GEOSM Length = 467 Score = 552 bits (1423), Expect = e-155, Method: Composition-based stats. Identities = 157/452 (34%), Positives = 226/452 (50%), Gaps = 8/452 (1%) Query: 42 ALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGL 101 L+ D ++ L+ A +G L+ I +V D +P +GL Sbjct: 6 ILIADDDKKTRDFVAAFLSYKGYQVYQAFDGQDALQKI-ELHEVQMVITDIMMPR-VNGL 63 Query: 102 IPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNAL 161 ++ + + ++ +T + ++ F E + L Sbjct: 64 EFIKQLKSIRPDIVTIAYSAFANFE-MTANLLKAGAFFYL---EKPFNLEELETHVKRGL 119 Query: 162 LIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGK 221 + L+S++ A+ +IG S M L + IE VA SD VLI GE+GTGK Sbjct: 120 EHQALQSKSFRSKPCIKNRAL-LNNIIGESEKMLSLFEMIEKVATSDSTVLIQGESGTGK 178 Query: 222 ELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNG 281 ELVA+AIH+ S R+ V LNCAA+P+ + ESELFGHVKG+FTGA+++R G+FEMAD G Sbjct: 179 ELVARAIHDLSNRSDKNFVALNCAAIPDELLESELFGHVKGSFTGAVASRIGRFEMADKG 238 Query: 282 TLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFR 341 TLFLDEIG++ LQ KLLRVLQ +++ VG R +VDVR++AATN++L V + FR Sbjct: 239 TLFLDEIGDMKANLQVKLLRVLQSRELEPVGSTRSKKVDVRIIAATNQNLDHMVASKEFR 298 Query: 342 ADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFP 401 DL++RLSV P+ +PPLRERG DV LL F E+ + +L +Y +P Sbjct: 299 EDLYYRLSVIPIMLPPLRERGSDVPLLLNSFLEKFNRSKQRKVQGFDKQVMEILSNYDWP 358 Query: 402 GNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATE 461 GNVRELE+ + R V++ + E L E +P L A E Sbjct: 359 GNVRELENLVERLVIIKTTGVISIHDLPEKYRGGRTTTVLH-GEPMTLPDDGFCLNSAVE 417 Query: 462 AFQRETIRQALAQNHHNWAACARMLETDVANL 493 F+ I QAL ++ N A +L L Sbjct: 418 EFENRLILQALEKSGGNKKEAAELLNLKRTTL 449 >UniRef50_C8QYP0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QYP0_9DELT Length = 506 Score = 552 bits (1423), Expect = e-155, Method: Composition-based stats. Identities = 156/499 (31%), Positives = 219/499 (43%), Gaps = 39/499 (7%) Query: 38 CDASALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDP 97 L+ D + + L++ + A G LE + + D +P+ Sbjct: 5 MGRKILVVDDEQNMRVALYEALSRGGYEVKVAENGRMALEMV-ESEAPDLVVTDIRMPE- 62 Query: 98 YDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEE-LRLIAALAAGA 156 DG+ Q+ V + + + G + ++ M+ D + +I Sbjct: 63 MDGIAMLQQIQAVRPGLPVVIITGYATVET-AVEAMKQGAVDYILKPFPVEVIEETIKKV 121 Query: 157 LSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGE 216 + + +IG +L + VA+S VL+ GE Sbjct: 122 MRQQPRPAAVAPAAETGSPPPGRTDEGSRTVIGRDRHFLRLLERARTVASSKATVLVLGE 181 Query: 217 TGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFE 276 +GTGKE+ A+ IH S R P V LNCAALPE + ESELFGH KGAFTGA+ + GKFE Sbjct: 182 SGTGKEVFARFIHHVSDRKAGPFVALNCAALPEGLLESELFGHEKGAFTGAVMAKKGKFE 241 Query: 277 MADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVL 336 +A GTL LDEIGE+ L LQAKLLRVLQ ++ R+G ++VDV V+A TNRDL E V Sbjct: 242 LAHGGTLLLDEIGEVPLHLQAKLLRVLQEEEVDRLGGKEPVKVDVHVVATTNRDLAEAVK 301 Query: 337 AGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQ 396 G FR DL++RL+V P+ +P LRER DD+ LLA +F E+ R LSA AR Sbjct: 302 DGTFRQDLYYRLNVIPIRLPSLRERPDDIFLLADFFIEKHSRRYNKPLKKLSAAARQRFL 361 Query: 397 HYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAV------- 449 Y +PGNVRE+E+ + R V+L+ + + P + PE + Sbjct: 362 DYDWPGNVREMENLLERGVLLSNGDELELWDFWDDELPPEPAASAELPEPSGPADAEPVD 421 Query: 450 -----------------------PVVKQNLREATE-----AFQRETIRQALAQNHHNWAA 481 P L A +R+ I QAL Q N Sbjct: 422 AAEPEASPPTVATEAVAAEASGSPDSAATLDSALAGRSLREVERQMILQALRQTDDNRTH 481 Query: 482 CARMLETDVANLHRLAKRL 500 A+ML V L Sbjct: 482 AAKMLGISVRTLRNKLNEY 500 >UniRef50_D2MLD9 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MLD9_9BACT Length = 480 Score = 552 bits (1423), Expect = e-155, Method: Composition-based stats. Identities = 156/474 (32%), Positives = 232/474 (48%), Gaps = 16/474 (3%) Query: 38 CDASALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDP 97 S L+ D +D L + + A G ++ I + D +P Sbjct: 1 MTRSVLIIDDEPLMRLSMLDALKAEGYHVQGASNGEDGIQKI-KTSRYDLVITDLRMP-G 58 Query: 98 YDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGAL 157 DGL + + + + + + + M+ D + + Sbjct: 59 SDGLQVVRVCKEYSSETEVIVITAHGSVDT-AVQAMKLGAHDYVTK---PFPMDELLMTV 114 Query: 158 SNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGET 217 A ++ L +N + M+G + M Q+ +++++VA +D VLI GE+ Sbjct: 115 DRATKVQALRQENTALRQELEGK-FNFDGMVGKNERMRQVLEKVKLVATTDATVLIFGES 173 Query: 218 GTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEM 277 GTGKE++A AIH SPR L+ ++CAALPE++ E+ELFGH +GAFTGA+ R G+FE+ Sbjct: 174 GTGKEVIANAIHRNSPRCGQALIKVSCAALPETLLEAELFGHERGAFTGALKQRLGRFEL 233 Query: 278 ADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLA 337 A GTLFLDEIGE++ +Q KLLRVLQ +RVG + DVR++ AT ++L+EEV A Sbjct: 234 AHKGTLFLDEIGEIAPMVQVKLLRVLQEKRFERVGGTETIGSDVRLVCATQKNLKEEVEA 293 Query: 338 GRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQH 397 GRFR DLF+RL+V +++PPLRER +D+++LA + ++ R S AR++L H Sbjct: 294 GRFREDLFYRLNVVQVALPPLRERKEDILVLAEHLLQRSTSRVQRVMKGFSVAARDVLLH 353 Query: 398 YSFPGNVRELEHAIHRAVVLA-RATRSGDEVILEAQHFAFPEVTLPTP--------EVAA 448 YSFPGNVRELE+AI RAV LA + F L + Sbjct: 354 YSFPGNVRELENAIERAVALAQEGDEIQAWDLCGQTVCPFLGGPLQSGCGFCQEGVSNVT 413 Query: 449 VPVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 L E E +RE I L + + A ++ L L KR GL Sbjct: 414 NARQTGTLAEVRERCEREYILAVLEREGWSRTAASKSLGLSRKALWEKCKRYGL 467 >UniRef50_A0LJL7 Two component, sigma54 specific, transcriptional regulator, Fis family n=21 Tax=Bacteria RepID=A0LJL7_SYNFM Length = 476 Score = 551 bits (1422), Expect = e-155, Method: Composition-based stats. Identities = 171/463 (36%), Positives = 248/463 (53%), Gaps = 16/463 (3%) Query: 43 LLRYDSRQFIPLAIDG-LAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGL 101 +L D I ++ G L + A G LE R D +P DGL Sbjct: 5 ILVVDDEISILQSLRGVLQDEGYRIGVAASGEEALEE-LRRDTPDLMLLDIWMP-GMDGL 62 Query: 102 IPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNAL 161 +E K HA + + + +G I + + FD E L ++ NAL Sbjct: 63 AVLEEIKKSHAHLPVIIISGHGNIET-AVKATRMGAFDFV---EKPLSLERILVSIKNAL 118 Query: 162 LIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGK 221 +LE +N+L +A + + M G S + L+++I A ++ VLI+GE GTGK Sbjct: 119 DFHRLEEENLLWRQ----KAHRTSHMTGRSEAVESLREQIRRAAPTNATVLITGENGTGK 174 Query: 222 ELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNG 281 EL A+ IH+ S R+ P+V +NCAA+PE + ESELFGH KGAFTGA R G+F++A+ G Sbjct: 175 ELAARMIHQLSKRSHRPMVEVNCAAIPEDLIESELFGHEKGAFTGAHERRRGRFDVANGG 234 Query: 282 TLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFR 341 TLFLDEIG++SL QAK+LR+LQ +RVG R ++VDVRV+AATN+D++ E+ AGRFR Sbjct: 235 TLFLDEIGDMSLRTQAKILRILQEQVFERVGGSRTIQVDVRVVAATNKDIQREIEAGRFR 294 Query: 342 ADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFP 401 DL++RL+V P+ VPPLR+R D+ LL F + + R + LQ YS+P Sbjct: 295 QDLYYRLNVIPIFVPPLRDRLQDIPLLVEDFLDDMAAESAMGRKEIDPAVFGPLQQYSWP 354 Query: 402 GNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATE 461 GN+REL + I R V++ R G + LP P A P LREA Sbjct: 355 GNIRELRNFIERMVIMTPGQRIGPRDLPLDF-----LNRLPKPPEEAGPYQCATLREARS 409 Query: 462 AFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLKD 504 F+R + + L + N + A + + ++LHR K LG+++ Sbjct: 410 VFERAYLLRKLDEFAWNVSLTAAQVGLERSHLHRKMKALGIRE 452 >UniRef50_Q1D1F9 DNA-binding reponse regulator HsfA n=3 Tax=Myxococcus RepID=Q1D1F9_MYXXD Length = 485 Score = 551 bits (1422), Expect = e-155, Method: Composition-based stats. Identities = 150/447 (33%), Positives = 226/447 (50%), Gaps = 5/447 (1%) Query: 54 LAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHAC 113 A+ + + A++ A A+ + D ++P+ G+ + Sbjct: 20 KAVTQILQREGHPVVAIDDAVEGLAAAKDPTIDVVVLDIKMPN-LSGMDLLRGIKADRPD 78 Query: 114 VGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLP 173 V + + + ++ ++ +D + + ++ A + L+ + Sbjct: 79 VEVIMMTAFATVET-AVEAVKAGAYDYLTKPF--ENIDEVSLTVAKAAERKALKDRTRAL 135 Query: 174 GDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASP 233 +A + +IG S M + K +E V+ S VLI GE+GTGKELVA+AIH S Sbjct: 136 EEALTV-RSQFEDLIGQSTQMRSVFKLVETVSHSTATVLIQGESGTGKELVARAIHYRSA 194 Query: 234 RAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSL 293 R P V +NC+AL E++ ESELFGHVKG+FTGA N+ G FE AD GT+FLDEIG++ Sbjct: 195 RKDKPFVAVNCSALTETLLESELFGHVKGSFTGATGNKKGLFEAADGGTIFLDEIGDVPP 254 Query: 294 ALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPL 353 A Q +LLRVLQ G+++RVG + ++VDVRV+AAT+ DL G+FR DLF+RL+V + Sbjct: 255 ATQVRLLRVLQEGEVKRVGANEPVKVDVRVIAATHVDLSRAKEQGKFREDLFYRLNVITI 314 Query: 354 SVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHR 413 +PPLR+R +DV LLA +F + + +S A L + GNVRELE+ I R Sbjct: 315 DLPPLRDRPEDVPLLAHHFLKLYASKADKKVTGISPRAMEALTCNRWTGNVRELENVIER 374 Query: 414 AVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALA 473 AVVL E + A + A Q R A AF+R + L Sbjct: 375 AVVLTGNEVIDVEDLPPGFQSAPQPDSTVEVFSLAHLPYAQAKRLAMRAFERRYLSALLE 434 Query: 474 QNHHNWAACARMLETDVANLHRLAKRL 500 +N+ N ++ AR D +N RL K+ Sbjct: 435 KNNQNVSSAARAAGVDRSNFRRLLKQY 461 >UniRef50_Q0EZK3 Response regulator of hydrogenase 3 activity (Sensor HydH) n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EZK3_9PROT Length = 463 Score = 551 bits (1421), Expect = e-155, Method: Composition-based stats. Identities = 155/468 (33%), Positives = 241/468 (51%), Gaps = 8/468 (1%) Query: 36 LECDASALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELP 95 ++ A LL D+ F + + L + A+ R G D LP Sbjct: 1 MKQSAFILLVEDNEDFRLILQEALERSGF-HVTAVANAMRAREAMTLGKFDLSLLDVRLP 59 Query: 96 DPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAG 155 D +G+ +E +G+ + G + +D ++ D Sbjct: 60 DG-NGIELMREFRHSDPDMGIIIMTGYAEVDT-AVDAVRLGANDFLKK---PFDIDEMLV 114 Query: 156 ALSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISG 215 + + Q+++ N + + T +IG P + +L + + ++A SD VLI+G Sbjct: 115 RIDELIKTRQIKADNKNLRELVRSQDQN-TGLIGQCPAIQKLTETVSLLANSDSTVLITG 173 Query: 216 ETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKF 275 E+G GKE++AKA+H++ R+ PLV +NC A+PE + ESELFGHVKGAFTGA+ R G+F Sbjct: 174 ESGCGKEVLAKALHKSGSRSGKPLVSINCGAIPEELLESELFGHVKGAFTGAVRARPGRF 233 Query: 276 EMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEV 335 E+A+ GT+FLDEIG++S LQ KLLRVLQ + VG + + VDVRV+AAT+RDL E+ Sbjct: 234 EIANGGTIFLDEIGDMSAKLQVKLLRVLQERCFEPVGSQQSIHVDVRVIAATHRDLEAEI 293 Query: 336 LAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLL 395 AGRFR DL++RL+V PL++PPLRERGDD++LL +F + ++ +S + ++ Sbjct: 294 AAGRFREDLYYRLNVIPLTLPPLRERGDDILLLTDHFITRFNQQKKADITGVSDEVKRII 353 Query: 396 QHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQN 455 +Y +PGNVREL++ I R L R E + + E L + + + Sbjct: 354 LNYQWPGNVRELQNLIERVTTLKRHGIMELEDLPSRM-ISDKERVLQSFRMDVENAECID 412 Query: 456 LREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 L+ + F+ I AL + N A L + L K+ GL+ Sbjct: 413 LKSTVDEFESHLILSALQRFQWNKNQAANFLAMNRTTLVEKIKKKGLQ 460 >UniRef50_Q73KY8 Sigma-54 dependent transcriptional regulator, putative n=1 Tax=Treponema denticola RepID=Q73KY8_TREDE Length = 505 Score = 551 bits (1421), Expect = e-155, Method: Composition-based stats. Identities = 161/504 (31%), Positives = 253/504 (50%), Gaps = 13/504 (2%) Query: 4 SVDVLANIAIELQRG-IGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLAKD 62 ++ L N ++ + ++++ + V+E DA++LL + + Sbjct: 11 KLNTLINTSLLINSNYSDLSVLLEKIVESAMDVVEGDAASLLMLEPDGERLRFEIAIGPK 70 Query: 63 VLG-RRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFAG 121 + ++ L+ + + P D + K + +P+ Sbjct: 71 GIEAKKMVLDLDGIAGWVIKYNRSAIINDVLSDPRF-DPTVQKVTGYKNRNMIAVPMRIK 129 Query: 122 QNLIGALTLDGMQPDQ-FDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFE 180 IG + + + ++ FD L L A A A NA E+ + + D + Sbjct: 130 DECIGVIEVLNKREEKDFDSDDLNVLELFATQTAIAYQNAKHYEKSREEIICLQDQLEQD 189 Query: 181 AVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLV 240 I S M + + +AASD +VLI GE+G GKEL+A+ +H S R NP + Sbjct: 190 R-GYHTFIAKSKVMNEKLELCRNIAASDASVLILGESGVGKELIAEQLHLNSRRVNNPFI 248 Query: 241 YLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLL 300 +NCAALPE + ESELFGHV+GAFT AIS+R G+FE+AD GT+FLDEIG++ L LQ KLL Sbjct: 249 RVNCAALPEGLLESELFGHVRGAFTDAISDRKGRFELADKGTIFLDEIGDIPLTLQTKLL 308 Query: 301 RVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRE 360 RVLQ +RVG ++ L VD R++AATN+++ E V G+FR+DL++RL+V P+ +PPLR Sbjct: 309 RVLQEMAFERVGSNKTLTVDTRIIAATNKNIEELVRQGKFRSDLYYRLNVLPIYIPPLRN 368 Query: 361 RGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARA 420 R DD+ LA +F ++ + S A L+ YS+PGN+RELE+A+ RA VL + Sbjct: 369 RKDDIQELAHFFLKKFSKEVKKPFLGFSPDAEKLINAYSWPGNIRELENAVERACVLGKP 428 Query: 421 TRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWA 480 ++ +L + E + +L+ A F++ I + L ++ N Sbjct: 429 PYIEEKDLLLKFESSSFEPEVN--------YSNPDLKSAVNDFKKSFIVKILNEHKWNQT 480 Query: 481 ACARMLETDVANLHRLAKRLGLKD 504 A A L L RL K L +K+ Sbjct: 481 AAAEKLGIQRTYLSRLIKELEIKE 504 >UniRef50_Q30WZ9 Two component transcriptional regulator, Fis family n=2 Tax=Desulfovibrionaceae RepID=Q30WZ9_DESDG Length = 465 Score = 551 bits (1421), Expect = e-155, Method: Composition-based stats. Identities = 159/470 (33%), Positives = 234/470 (49%), Gaps = 12/470 (2%) Query: 38 CDASALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDP 97 +A L+ D L + A G L +A D LP Sbjct: 1 MNARVLIVDDEDGIRFSLRGILEDEGYEVAEAETGEEGL-KLATETPPDLIFLDIWLP-G 58 Query: 98 YDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGAL 157 DGL A + + + +G I ++ ++ +D E L + Sbjct: 59 MDGLEVLDNLRTADASLPVIMISGHGNIET-AVNAIKKGAYDFI---EKPLSLEKVVISA 114 Query: 158 SNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGET 217 + AL +L +N +M G S + +L+ +I VA +D VLI+GE Sbjct: 115 NKALEYYRLRRENQALRSRLTQS--TTVEMTGNSASIVELRGQIGRVAPTDAWVLITGEN 172 Query: 218 GTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEM 277 GTGKE+ A++IH +S R PLV +NCAA+PE + ESELFGH KGAFTGA + ++GKFEM Sbjct: 173 GTGKEIAARSIHASSRRKDKPLVAVNCAAIPEELIESELFGHEKGAFTGAETAKTGKFEM 232 Query: 278 ADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLA 337 A GTLFLDEI ++SL QAK+LR+LQ +RVG + ++VDVRV+AATN+ L +E+ A Sbjct: 233 AHQGTLFLDEIADMSLKTQAKILRILQEQSFERVGGHKTVKVDVRVIAATNKSLEDEIAA 292 Query: 338 GRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQH 397 GRFR DL++RL V PL VPPLR+RGDDV+LL G F + G V + A + L Sbjct: 293 GRFREDLYYRLRVIPLVVPPLRQRGDDVMLLIGEFMNRMTAEHGFRPVTFAPDACSALLC 352 Query: 398 YSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAF----PEVTLPTPEVAAVPVVK 453 Y +PGNVREL++ + R +++ ++ A P+ P +P Sbjct: 353 YHWPGNVRELKNFVERMLIMHSGQTVTAAMLPPEYRCAGAGIMPQPCTAGPSDGMIPEGV 412 Query: 454 QNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 + + A AF+ + L + N A + + + L+R K ++ Sbjct: 413 MDFKAARTAFEARFLEAKLQEFGGNITRLAEAIGLERSYLYRKLKSYNIQ 462 >UniRef50_C6WY59 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Methylophilaceae RepID=C6WY59_METML Length = 457 Score = 551 bits (1420), Expect = e-155, Method: Composition-based stats. Identities = 168/466 (36%), Positives = 239/466 (51%), Gaps = 22/466 (4%) Query: 42 ALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGL 101 L D + L L + A +G LE + A V D +P DGL Sbjct: 8 ILAVDDEPSMLRLLEISLRQAGYQPLTARDGREALE-VINAQQVDCVVTDLHMPR-MDGL 65 Query: 102 IPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNAL 161 +E K + + + Q IG+ +D M+ D A A+ AL Sbjct: 66 QLLKEVRKTDTELPVIIVTAQGEIGS-AIDAMKNGASDYI---LRPFDLAELELAIKRAL 121 Query: 162 LIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGK 221 +L +N + + T +IG SP M L + I VA VL++GETGTGK Sbjct: 122 SFSRLVVENRFLRE----DKADTTGLIGNSPAMQHLAESIRQVAPEKATVLVAGETGTGK 177 Query: 222 ELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNG 281 ELVA+AIH ASPR V +NCAA+P + ESELFGH KGAFTGA+ R GKFE+AD G Sbjct: 178 ELVARAIHAASPRNNALFVAVNCAAIPHEMLESELFGHEKGAFTGAVKERIGKFELADGG 237 Query: 282 TLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFR 341 TLFLDE+ E+ + LQAKLLR LQ I+R+G +R + VD+RV+AATNR+ R+ + G+ R Sbjct: 238 TLFLDEVTEMPMQLQAKLLRALQENVIERLGGNRPIAVDIRVVAATNRNPRDAIKDGKLR 297 Query: 342 ADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFP 401 DL++RL+VF + +P L+ R D+ LLA +F RV +SA A +L Y +P Sbjct: 298 EDLYYRLNVFRIDLPALKARKSDIELLATHFLA-------KRRVDISAQAVQVLMQYDWP 350 Query: 402 GNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPE-----VTLPTPEVAAVPVVKQNL 456 GNVRELE+ + RA +++ + + + + E + A P L Sbjct: 351 GNVRELENVLERAAIISGNQQIQPQHLPAEMLNSNGEFIDATALGHNADTAEAPQNPLCL 410 Query: 457 REATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 A E +R+ I +ALAQ + N + A++LE +L + G+ Sbjct: 411 PNAVEQLERQLIAKALAQTNGNKSKAAKLLEISERSLWYKLSQYGI 456 >UniRef50_B8DLN3 Two component, sigma54 specific, transcriptional regulator, Fis family n=12 Tax=Deltaproteobacteria RepID=B8DLN3_DESVM Length = 491 Score = 550 bits (1419), Expect = e-155, Method: Composition-based stats. Identities = 165/494 (33%), Positives = 237/494 (47%), Gaps = 37/494 (7%) Query: 40 ASALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYD 99 + +L D I ++ G+ +D A+ D +P D Sbjct: 2 HARILIIDDEDGIRFSLRGILEDEGFEVLEAPSGEDGLALLARETPDLVFLDIWMP-GMD 60 Query: 100 GLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSN 159 GL + + + + +G I ++ ++ D E L A Sbjct: 61 GLAVLDQLHAQRPDLPVIMISGHGTIET-AVNAIRKGAHDFI---EKPLSLEKVLIAAQR 116 Query: 160 ALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGT 219 AL L +N D+ P +M G SP M L+ +I VA +D VLI+GE GT Sbjct: 117 ALEYGDLRRENEALRDSLPTAHA--DEMNGRSPVMETLRGQIARVAPTDAWVLITGENGT 174 Query: 220 GKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMAD 279 GKEL A+AIH S RA PLV +NCAA+PE + ESELFGH KGAFTGA S ++GKFEMA Sbjct: 175 GKELAARAIHAGSRRADRPLVAVNCAAIPEELIESELFGHEKGAFTGADSAKAGKFEMAH 234 Query: 280 NGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGR 339 GTLFLDEIG++SL QAK+LR+LQ +RVG R +RVDVRV+AATN++L +E+ AG Sbjct: 235 KGTLFLDEIGDMSLKTQAKILRILQEQQFERVGGHRTMRVDVRVIAATNKNLEDEIAAGT 294 Query: 340 FRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYS 399 FR DL++RL VFPL +PPLRER DV LL F ++ G+ + A+ L Y Sbjct: 295 FREDLYYRLRVFPLVLPPLREREGDVPLLIDLFAQRLARDYGVRPATFAPDAQEALARYP 354 Query: 400 FPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEV-------------------- 439 +PGNVREL + + R ++L ++ Sbjct: 355 WPGNVRELRNFVERMLILHAGLEVTRSMLPPEFLPRSGAGMNGSPGAATAAGGRAASGTG 414 Query: 440 ----------TLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETD 489 P++AA+ +L+ A AF+ + + LA+ N A + + Sbjct: 415 GATGQGGDPLPDHLPDMAALLAPGMDLKAARAAFEAQYLAARLAECGGNVTRLAEAVGIE 474 Query: 490 VANLHRLAKRLGLK 503 ++L+R K ++ Sbjct: 475 RSHLYRKLKGYNIQ 488 >UniRef50_P71229 Hydrogenase-4 transcriptional activator n=45 Tax=Enterobacteriaceae RepID=HYFR_ECOLI Length = 670 Score = 550 bits (1418), Expect = e-155, Method: Composition-based stats. Identities = 174/512 (33%), Positives = 253/512 (49%), Gaps = 17/512 (3%) Query: 6 DVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYD---SRQFIPLAIDGLAKD 62 VL +I + + D + + + +++ D + +F D A Sbjct: 155 RVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASH 214 Query: 63 VLGRRFALEGHPRL-EAIARAGDVVRFPADSELPDP-YDGLIPGQESLKVHACVGLPLFA 120 + G L + +L D L+ S + + +PL Sbjct: 215 CACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLTF 274 Query: 121 GQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNAL-------LIEQLESQNMLP 173 G + GAL L F + + L+ IA A A+ NA L E L+ +N Sbjct: 275 GNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQL 334 Query: 174 GDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASP 233 + + +I S M L ++++IVA SD VLI GETGTGKE++A+AIH+ SP Sbjct: 335 SEQL-LSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSP 393 Query: 234 RAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSL 293 R PLV +NCAA+P S+ ESELFGH KGAFTGAI+ G+FE+AD GTLFLDEIG+L L Sbjct: 394 RRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPL 453 Query: 294 ALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPL 353 LQ KLLRVLQ +I+R+G R + V+VRV+AATNRDL + V +FR+DLF+RL+VFPL Sbjct: 454 ELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPL 513 Query: 354 SVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHR 413 +PPLR+R +D+ LLA +F ++ + + A L + +PGNVRELE+ I R Sbjct: 514 ELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIER 573 Query: 414 AVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALA 473 AV+L R + + + ++ E + +R+ I Q L Sbjct: 574 AVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPEN-DEEERQRIVQVLR 632 Query: 474 QNHHNWA---ACARMLETDVANLHRLAKRLGL 502 + + A A L L +RLG+ Sbjct: 633 ETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 >UniRef50_Q8Z333 Transcriptional regulatory protein zraR n=36 Tax=Proteobacteria RepID=ZRAR_SALTI Length = 441 Score = 550 bits (1417), Expect = e-155, Method: Composition-based stats. Identities = 160/458 (34%), Positives = 224/458 (48%), Gaps = 24/458 (5%) Query: 42 ALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGL 101 L+ D + L A GH L + R D + + DG+ Sbjct: 8 ILVVDDDVSHCTILQALLRGWGYNVALAYSGHDALAQV-REKVFDLVLCDVRMAE-MDGI 65 Query: 102 IPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNAL 161 +E ++ + + + + + ++ ++ D L L AL Sbjct: 66 ATLKEIKALNPAIPILIMTAFSSVET-AVEALKAGALDYLIK---PLDFDRLQETLEKAL 121 Query: 162 LIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGK 221 + G P + Q MIG SP M L EI +VA SD VLI G++GTGK Sbjct: 122 AHTR------ETGAELPSASAAQFGMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGK 175 Query: 222 ELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNG 281 ELVA+A+H S R+ PLV LNCAAL ES+ ESELFGH KGAFTGA R G+F AD G Sbjct: 176 ELVARALHACSARSDKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGG 235 Query: 282 TLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFR 341 TLFLDEIG++S +Q +LLR +Q ++QRVG ++ + VDV ++AAT+RDL EEV AGRFR Sbjct: 236 TLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVWLIAATHRDLAEEVSAGRFR 295 Query: 342 ADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFP 401 DL++RL+V + +P LR+R +D+ LLA +F + R + + A +LL HY +P Sbjct: 296 QDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKAVKGFTPQAMDLLIHYDWP 355 Query: 402 GNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATE 461 GN+RELE+AI RAVVL + + A + + Sbjct: 356 GNIRELENAIERAVVLLTGEYISERELPLAI------------AATPIKAENSAEIQPLV 403 Query: 462 AFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKR 499 ++E I AL + N AR L L R Sbjct: 404 DVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 >UniRef50_Q1NVH0 Response regulator receiver n=2 Tax=delta proteobacterium MLMS-1 RepID=Q1NVH0_9DELT Length = 493 Score = 549 bits (1416), Expect = e-155, Method: Composition-based stats. Identities = 162/490 (33%), Positives = 222/490 (45%), Gaps = 30/490 (6%) Query: 38 CDASALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDP 97 L+ D + + L++ A G LE + D +P+ Sbjct: 1 MGRKILVVDDEQNMRIALYEALSRSGHQVTLAENGRLALE-LIEQQPPDLVVTDIRMPE- 58 Query: 98 YDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEE-LRLIAALAAGA 156 DG+ Q+ + + + G + ++ M+ D + +I Sbjct: 59 MDGIEMLQQIKARAPQLPVVIITGYATVET-AVEAMKQGAVDYILKPFPVEVIDETVRKV 117 Query: 157 LSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGE 216 L S+ P A P A Q +IG +L + VA+S VL+ GE Sbjct: 118 FKQRQGEAALGSEGATPAAAVPAAASDQRTVIGRDAHFLRLLERARAVASSKATVLVLGE 177 Query: 217 TGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFE 276 +GTGKE+ A+ IH S R P V LNCAALPE + ESELFGH KGAFTGA+ ++ GKFE Sbjct: 178 SGTGKEVFARFIHHVSDRKAGPFVALNCAALPEGLLESELFGHEKGAFTGAVMSKKGKFE 237 Query: 277 MADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVL 336 A GTL LDEIGE+ L LQAKLLRVLQ ++ R+G ++VDV VLA TNRDL V Sbjct: 238 QAHGGTLLLDEIGEVPLHLQAKLLRVLQEEEVDRLGGKEPVKVDVHVLATTNRDLGAAVR 297 Query: 337 AGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQ 396 G FR DLF+RL+V P+ +P +RER +D+ LLA +F E+ R LSA +R Sbjct: 298 EGNFREDLFYRLNVIPIRLPAMRERPEDISLLADHFIEKYTARYQKPAKKLSAASRQRFL 357 Query: 397 HYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLP-----TPEVAAVPV 451 Y +PGNVRELE+ + RAV+L+ E + VT PV Sbjct: 358 EYQWPGNVRELENLVERAVLLSAGPELEPWDFWEDELPPAGAVTGATDPELAGSANPEPV 417 Query: 452 VKQNL---------------------REATEAFQRETIRQALAQNHHNWAACARMLETDV 490 +L R + +R+ I +AL Q N A+ML V Sbjct: 418 AAADLALAGSNTDAAASAAEIAIDPSRHSLWDVERQMILRALRQTSDNRTHAAKMLGISV 477 Query: 491 ANLHRLAKRL 500 L Sbjct: 478 RTLRNKLNEY 487 >UniRef50_D2TTF4 Two-component system response regulator n=3 Tax=Proteobacteria RepID=D2TTF4_CITRO Length = 441 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 161/458 (35%), Positives = 230/458 (50%), Gaps = 24/458 (5%) Query: 42 ALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGL 101 L+ D + L A G LE A D + + DG+ Sbjct: 8 ILVVDDDVSHCTILQALLRGWGYNVALAYSGREALEK-ASGHVFDLVLCDVRMAE-MDGI 65 Query: 102 IPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNAL 161 +E ++ + + + + + ++ ++ D L L +L Sbjct: 66 ETLREIKALNPAIPVLIMTAFSSVET-AVEALKTGALDYLIK---PLDFDRLQETLEKSL 121 Query: 162 LIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGK 221 Q P + Q+ M+G SP M QL EI +VA SD VLI G++GTGK Sbjct: 122 AHAQ------EVAGELPSVSASQSGMVGKSPAMQQLLSEIAMVAPSDATVLIHGDSGTGK 175 Query: 222 ELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNG 281 ELVA+A+H +S R+ PLV LNCAAL ES+ ESELFGH KGAFTGA R G+F AD G Sbjct: 176 ELVARALHASSARSDKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGG 235 Query: 282 TLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFR 341 TLFLDEIG++S +Q +LLR +Q ++QRVG ++ L VDVR++AAT+RDL +E AGRFR Sbjct: 236 TLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTLSVDVRLIAATHRDLAQEASAGRFR 295 Query: 342 ADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFP 401 DL++RL+V + P LR+R +D+ LLA +F ++ R + + A +LL HY++P Sbjct: 296 QDLYYRLNVVTIETPSLRQRREDIPLLAEHFLQRFAARNRKAVKGFTPQAMDLLIHYAWP 355 Query: 402 GNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATE 461 GN+RELE+AI RAVVL + + A A+P++ + Sbjct: 356 GNIRELENAIERAVVLLTGEYISERELPLAI------------ANQAMPLMPAQAIQPLV 403 Query: 462 AFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKR 499 ++E I AL + N AR L L R Sbjct: 404 EVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 >UniRef50_C8R0P5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Deltaproteobacteria RepID=C8R0P5_9DELT Length = 456 Score = 548 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 147/461 (31%), Positives = 224/461 (48%), Gaps = 16/461 (3%) Query: 42 ALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGL 101 L+ D + L D LA +G + ++ D ++P G+ Sbjct: 8 ILVIDDDLRMRQLLRDTLASAGFTAELCADGREA-AQLLQSRSFNVILTDLQMPHF-SGI 65 Query: 102 IPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNAL 161 +++L + + L G + + ++ ++ +D + A Sbjct: 66 EILEQALAANPDSMVVLVTGHGTVES-AVEAIKKGAYDYIQK---PFEPDELLLTVQRAT 121 Query: 162 LIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGK 221 +L +N + +++G SP + +LK+ I VA VLI+GETGTGK Sbjct: 122 EHARLRQENRRLQQQV--AGCRGDELVGESPPLKKLKELIAQVAPFSTTVLINGETGTGK 179 Query: 222 ELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNG 281 EL AK IH+ S R P + +NC ALPE++ ESELFGHVKGAFTGA ++ G FE D G Sbjct: 180 ELAAKLIHKWSGRHKQPFLAINCGALPETLLESELFGHVKGAFTGADQDKPGLFETVDQG 239 Query: 282 TLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFR 341 TLFLDEI ++L Q KLLRVLQ G +VG + R DVRV+AA++R L E V AG FR Sbjct: 240 TLFLDEIDSMTLNFQVKLLRVLQEGTFLKVGGRQPCRADVRVIAASSRPLSEGVAAGSFR 299 Query: 342 ADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFP 401 DLF+RL+V L +PPLR+R +D+ LLA +F + + + A L +S+P Sbjct: 300 RDLFYRLNVVSLELPPLRQRREDIPLLAHHFLAKYNAKYDKQVQTIPAPVITRLLDHSWP 359 Query: 402 GNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATE 461 GNVRELE+A+ RA++ E + + T + A Sbjct: 360 GNVRELENAVERALLFCPGQELQAEHLPPLETGGEEAELHTTADDAKS--------LTMA 411 Query: 462 AFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 + +++ I +AL + + + A +L A+L R K+ + Sbjct: 412 SMEKKLIIKALQRANGHRGKTAELLGISPASLWRKIKKYEI 452 >UniRef50_Q9APD9 Transcriptional regulatory protein zraR n=89 Tax=Proteobacteria RepID=ZRAR_KLEOX Length = 443 Score = 548 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 160/464 (34%), Positives = 226/464 (48%), Gaps = 21/464 (4%) Query: 36 LECDASALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELP 95 + + +L D + L + R + R D + Sbjct: 1 MSGEQVDILVVDDDISHCTILQALLRGWGYRVALANNGLQALEKVREKVFDLVLCDIRMA 60 Query: 96 DPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAG 155 + DG+ +E + + + + + + ++ ++ D L Sbjct: 61 E-MDGIETLKEIKTFNPSIPVLIMTAYSSVDT-AVEALKSGALDYLIK---PLDFDKLQL 115 Query: 156 ALSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISG 215 LS AL +L Q M+G SP M L I +VA SD VLI G Sbjct: 116 TLSEALAHTRLSE------SPVTETPAAQFGMVGDSPAMRALLNNITLVAPSDATVLIHG 169 Query: 216 ETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKF 275 E+GTGKELVA+A+H +S R+ PLV LNCAAL ES+ ESELFGH KGAFTGA R G+F Sbjct: 170 ESGTGKELVARALHASSARSRRPLVILNCAALNESLLESELFGHEKGAFTGADKRREGRF 229 Query: 276 EMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEV 335 AD GTLFLDEIG++S +Q +LLR +Q ++QRVG ++ L VDVR++AAT+RDL EEV Sbjct: 230 VEADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTLSVDVRLIAATHRDLAEEV 289 Query: 336 LAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLL 395 AGRFR DL++RL+V + +PPLR R +D+ LA YF ++ R + + A +LL Sbjct: 290 SAGRFRQDLYYRLNVVTIDMPPLRHRREDIPPLARYFLQRYAERNRKAVQGFTPQAMDLL 349 Query: 396 QHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQN 455 HY++PGN+RELE+A+ RAVVL + + A T A + Sbjct: 350 IHYAWPGNIRELENAVERAVVLLTGEYISERELPLAI----------TGTPVADAPHGDD 399 Query: 456 LREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKR 499 + ++E I AL + N AR L L R Sbjct: 400 SIQPLVEVEKEAILAALERTGGNKTEAARRLGITRKTLLAKLSR 443 >UniRef50_Q1NIP6 Response regulator receiver n=2 Tax=Deltaproteobacteria RepID=Q1NIP6_9DELT Length = 461 Score = 548 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 165/462 (35%), Positives = 236/462 (51%), Gaps = 7/462 (1%) Query: 42 ALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGL 101 L+ D L ++ G A +G L R D +D +P P +GL Sbjct: 4 ILVVDDELSMREFLKILLEEEGHGVCCAGDGEAALAR-LRQEDFDLLISDIRMPPP-NGL 61 Query: 102 IPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNAL 161 ++ ++ + + L + M+ FD + +S AL Sbjct: 62 ELLDQARQLQPELPVVLVTAFASPDD-AVLAMKNGAFDYLTK---PFKVDEIKDIVSTAL 117 Query: 162 LIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGK 221 + + L ++ +IG SP M ++ + I VA + NVLI GE+GTGK Sbjct: 118 SSRRQLPEPTLKTNSEVPANGGFVGIIGNSPEMLKIYEVIRRVAPTQANVLIHGESGTGK 177 Query: 222 ELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNG 281 ELVA+AIH+ SP + V + C+A+PES+ ESELFGH KGAFTGA +NR+G FE A+ G Sbjct: 178 ELVARAIHQLSPAVQHQFVPIICSAIPESLFESELFGHAKGAFTGATTNRTGLFEQANYG 237 Query: 282 TLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFR 341 T FLDEIGEL+ Q KLLRVLQ +I+RVG+ +R++ R+++ATNRDL EEV AGRFR Sbjct: 238 TAFLDEIGELTPLTQTKLLRVLQEREIKRVGESVAIRINFRMISATNRDLEEEVAAGRFR 297 Query: 342 ADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFP 401 DLF+RL+V P+ VPPLRER DV LL +F + G +S+ A LL +Y FP Sbjct: 298 EDLFYRLAVVPIRVPPLRERKSDVPLLVEHFLAKYSRLFGKDIRKISSYALELLMNYDFP 357 Query: 402 GNVRELEHAIHRAVVLARATRSGDEVI-LEAQHFAFPEVTLPTPEVAAVPVVKQNLREAT 460 GNVRELE+ I R V + + E + L + V + L A Sbjct: 358 GNVRELENIIERGVAMENSQIILPESLTLTGRRHGGQPAPADDRGSLEADVFNRGLEPAL 417 Query: 461 EAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 F+R+ I +AL + ++ A +L T +L K+ + Sbjct: 418 TDFERQMIIKALQKAGNSKTRAAELLNTSFRSLRYKIKKYEI 459 >UniRef50_A9AYA4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AYA4_HERA2 Length = 457 Score = 547 bits (1411), Expect = e-154, Method: Composition-based stats. Identities = 166/466 (35%), Positives = 238/466 (51%), Gaps = 20/466 (4%) Query: 39 DASALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPY 98 L+ D L + ++ A G L + + D +P Sbjct: 7 QRHILIADDDPGIRGLLCEVFDEEGYLTEPAEHGGEVLAKMTKKHPYDLLIMDVRMP-GQ 65 Query: 99 DGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDV----FSDEELRLIAALAA 154 DGL ++ K + + + +Q +D F EE+ L+ Sbjct: 66 DGLTILEQLRKNGITTPVIMMTAHGTSST-AIRAIQIGAYDYVIKPFDVEEVTLVVKRLF 124 Query: 155 GALSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLIS 214 A + +LE+++ P D MIG SP M ++ K+I VA +D VLI+ Sbjct: 125 DHQQLASKVRELEAKSFDPRDK----------MIGNSPAMQEIYKQIGRVAHTDATVLIT 174 Query: 215 GETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGK 274 GETGTGKE++A IH S R P+V +NCAALPES+ ESELFGH KGAFTGA++ R G+ Sbjct: 175 GETGTGKEVLANLIHVNSARRNGPMVKVNCAALPESLLESELFGHEKGAFTGAVAQRKGR 234 Query: 275 FEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREE 334 FE+A G++FLDEIGE++LA Q KLLR+LQ + +RVG +RVDVRV+AATNRDL + Sbjct: 235 FELAHKGSIFLDEIGEMTLATQKKLLRILQEREFERVGGTTTVRVDVRVIAATNRDLEAD 294 Query: 335 VLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNL 394 V AG FR DL++RL+V L +P LR+R D+ LLA +F ++ R +S A Sbjct: 295 VRAGTFREDLYYRLNVITLHLPALRQRIGDIPLLAEFFLDKYRYAPSSPPARISEEAMER 354 Query: 395 LQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQ 454 L +Y +PGNVR+LEH I RAV+L+R E + + ++AA K Sbjct: 355 LNNYDWPGNVRQLEHEIERAVILSRGNVITSEHM----SLVPSSRSALQVDIAARLREKS 410 Query: 455 NLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRL 500 L E +R +++AL Q+ + AR L A + K+ Sbjct: 411 TLEELLADVERLALQEALVQHDDDLKVAARSLGLSEAEFQKRQKKY 456 >UniRef50_B1Y713 Transcriptional regulator, NifA, Fis Family n=4 Tax=Burkholderiales RepID=B1Y713_LEPCP Length = 593 Score = 547 bits (1410), Expect = e-154, Method: Composition-based stats. Identities = 151/577 (26%), Positives = 246/577 (42%), Gaps = 78/577 (13%) Query: 4 SVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQ-----FIPLAIDG 58 + + I L + F+ + L L ++ + + G Sbjct: 14 ELITIYEICRILGASLDIGRTFRASLNVLAAHLGLSRVMIVMAPDDRDGEARLRVHSSVG 73 Query: 59 LAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIP-GQESLKVHACVGLP 117 L ++ R G + + +G V P ++ + D G ++ ++ A V +P Sbjct: 74 LDQEQERRGQWHYGEGVIGHVYASGMPVVVPDVAQAAEFIDRTGAFGAQADRMMAFVVVP 133 Query: 118 LFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSN-----ALLIEQLESQNML 172 L + ++G L + D+ + +AA ++ ++L+ + Sbjct: 134 LKTDRAVVGVLAAQREVSGGVRLSDDQRILTMAATLMAQAASLHGAVTEEHKRLQLETTR 193 Query: 173 PGDATPFE---AVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIH 229 A E ++G+S GM Q+ E+ A + VL+ GE+GTGKE +A+A+H Sbjct: 194 LQKALAPEPRGRYTLDNVVGVSRGMQQVFSEVHQAAPARATVLLRGESGTGKEAIARALH 253 Query: 230 EASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIG 289 SPR P + +NCAAL ES+ ESELFGH +GAFTGA +R G+FE A GTLFLDE+G Sbjct: 254 YLSPRKDAPFIKVNCAALTESLLESELFGHERGAFTGAAGDRKGRFEQAHTGTLFLDEVG 313 Query: 290 ELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLS 349 ++S + QAKLLRVLQ + +RVG +R ++VDVR++ ATNRDL + V G +RADL++R++ Sbjct: 314 DISASFQAKLLRVLQEREFERVGGNRAIKVDVRLICATNRDLEKMVKRGEYRADLYYRIN 373 Query: 350 VFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEH 409 V + +PPLRER DD+ L +F ++ + ++ A +L H +PGNVRELE+ Sbjct: 374 VVSIFLPPLRERRDDIPALVSHFVDRFNKENRRK-LRIAGDAMEVLSHCYWPGNVRELEN 432 Query: 410 AIHRAVVLARA--------------------------TRSGDEVILEAQHFAFPEVTLPT 443 I R +A + + H + Sbjct: 433 CIERTATMANGDLIRGVSFPCRHNRCLTQTLHHLEKDDAVAPISMPTSLHIPARLPIRES 492 Query: 444 PEVAAVP------------------------------VVKQNLREATEAF-------QRE 466 P ++L F +RE Sbjct: 493 PRPVPGSIPASAAAASADPDDDWLDDEADGGDDVLRIGPTEHLTGTPRQFGNEPPDGERE 552 Query: 467 TIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 + A+ Q A AR+L L ++ ++ Sbjct: 553 RLIWAMEQCAWVQAKAARLLHVTPRQLGYALRKYNIE 589 >UniRef50_B3E4S0 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Geobacter lovleyi SZ RepID=B3E4S0_GEOLS Length = 456 Score = 547 bits (1410), Expect = e-154, Method: Composition-based stats. Identities = 133/461 (28%), Positives = 206/461 (44%), Gaps = 15/461 (3%) Query: 42 ALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGL 101 L D + + + D R + D +P DG+ Sbjct: 7 ILFVDDEPAYCRIFSKRIGADPRFRVETAGSGAEALERLQHSPADIVITDLSMPL-MDGI 65 Query: 102 IPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNAL 161 E ++ + + + + + + M+ +D + + + Sbjct: 66 ELLSEIKSLYPQIFILILTSDDSTSQV-VKAMKAGAYDYLLKPFDFEMVERSIATI---- 120 Query: 162 LIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGK 221 L + Q L + E +IG M ++ + I VA + VLI+GE+GTGK Sbjct: 121 LSHKAAVQAGLCPECLSGEQYCFENLIGQDRKMFEIYEMISQVAQTSATVLITGESGTGK 180 Query: 222 ELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNG 281 EL+A AIH S R P + +NCAAL E + SELFGH KGAFTGA++ + G FE A G Sbjct: 181 ELIASAIHAKSTRKDKPFIQINCAALTEGLISSELFGHEKGAFTGAVARKKGLFEQASGG 240 Query: 282 TLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFR 341 TLFLDEIG++S Q LLR+L+ G QRVG ++ DVR++ ATNRDL +FR Sbjct: 241 TLFLDEIGDISPTTQVSLLRILELGTFQRVGGTETIKADVRLICATNRDLAAAAREKQFR 300 Query: 342 ADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFP 401 DL++RL+V L PPLR+R D+ LL YF E+ ++ A LL +Y +P Sbjct: 301 EDLYYRLNVVSLQAPPLRDRRSDIPLLVRYFLERYCSLNNKQIDGVTRDAMTLLCNYDWP 360 Query: 402 GNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATE 461 GN REL + I AV+ +R + + + + T +A Sbjct: 361 GNCRELANIIEHAVIFSRGRTLDKDSLPSQIRTSDRHSSGLTLNLATA---------TLA 411 Query: 462 AFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 + I++ L +++ N A +L+ L+ ++ L Sbjct: 412 DAESALIKKVLEESNWNLKKAAELLDIARGTLYGKMEKYHL 452 >UniRef50_A4VJ57 Nitrogen fixation positive regulatory protein n=10 Tax=cellular organisms RepID=A4VJ57_PSEU5 Length = 521 Score = 547 bits (1410), Expect = e-154, Method: Composition-based stats. Identities = 167/514 (32%), Positives = 250/514 (48%), Gaps = 27/514 (5%) Query: 1 MSFSVDVLANIAIELQRGIGHQDRFQRLITTLRQVLEC--DASALLRYDSRQFIPLAIDG 58 + + LA IA L RG ++ ++ L + L ++ A+ Sbjct: 18 LDAQLQALAQIARILNRGRPIEELLAEILAVLHEDLGLLHGLVSICNPKDGSLQVGAVHS 77 Query: 59 LAKDVL---GRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVG 115 ++ V+ G I + G+ V P D L L + Sbjct: 78 DSETVVRACESTRYRIGEGVFGNILKHGNSVVLGRIDAEPRFLDRLALYDMDL---PFIA 134 Query: 116 LPLFA-GQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLI------EQLES 168 +P+ A IG L + + D E RL+ +A L+ +++ Sbjct: 135 VPIKAVDGTTIGVLAAQPDR--RADELMPERTRLMEIVARLLAQTVRLVVNLEDGQEVVD 192 Query: 169 QNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAI 228 + + + ++G + M ++ ++ VA + VLI GE+GTGKEL+A AI Sbjct: 193 ERDELRREVRAKYGFENMVVGHTASMRRVFDQVRRVAKWNSTVLILGESGTGKELIASAI 252 Query: 229 HEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEI 288 H SPRA PLV LNCAALPE++ ESELFGH KGAFTGA+ R G+FE AD GTLFLDEI Sbjct: 253 HYNSPRAHQPLVRLNCAALPETLLESELFGHEKGAFTGAVKQRKGRFEQADGGTLFLDEI 312 Query: 289 GELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRL 348 GE+S QAKLLRVLQ G+++RVG + ++V+VR++AATNRDL EV G+FR DL++RL Sbjct: 313 GEISPMFQAKLLRVLQEGELERVGGSQTVKVNVRIVAATNRDLEHEVEQGKFREDLYYRL 372 Query: 349 SVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELE 408 +V + VPPLRER D+ LA + ++ +QG L+ A LL + +PGNVRELE Sbjct: 373 NVMAIRVPPLRERSADIPELAEFLLDKIARQQGRKLK-LTDSALRLLMSHRWPGNVRELE 431 Query: 409 HAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETI 468 + + R+ +++ +V+ P PEV ++ + +R + Sbjct: 432 NCLERSAIMSEDGTISRDVVSLTGLDHDATPLAPVPEVDLAD-------DSLDDRER--V 482 Query: 469 RQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 AL Q A AR+L + + L + Sbjct: 483 IAALEQAGWVQAKAARLLGMTPRQIAYRVQTLNI 516 >UniRef50_C6MX44 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Geobacter sp. M18 RepID=C6MX44_9DELT Length = 460 Score = 546 bits (1407), Expect = e-154, Method: Composition-based stats. Identities = 142/460 (30%), Positives = 216/460 (46%), Gaps = 14/460 (3%) Query: 42 ALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGL 101 L+ D L A G ++ + D LP DGL Sbjct: 4 ILIIEDELSMRLGLAYTLEAAGYAVTAAERGDEGID-LIGKQRFDVVVTDMRLP-GADGL 61 Query: 102 IPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNAL 161 + K G+ + G + ++ M+ FD + A + L Sbjct: 62 EVLKAVRKAQPDTGVVVITGYADVQT-AVEAMKLGAFDYIAK---PFEPAHLLSLVERFL 117 Query: 162 LIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGK 221 + + E + +++ SP M + I++ A +D +V+I GE+GTGK Sbjct: 118 CQTAHVEDSQRLREEV-AEHQRFEEIVSNSPSMLSVFNLIQMAAKTDSSVIIYGESGTGK 176 Query: 222 ELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNG 281 ELVA A+H SPR P + +NCAA+PE++ E+E+ G+ KGAFTGA+ + GK E AD G Sbjct: 177 ELVANAVHNRSPRLDKPFIKVNCAAIPENLLEAEMCGYEKGAFTGALQRKKGKLETADGG 236 Query: 282 TLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFR 341 T F DEIG++S LQAKLLRVL+ +RVG + VD+R + AT R L +E+ G+FR Sbjct: 237 TFFFDEIGDMSFPLQAKLLRVLETRSFERVGGTEPVHVDIRFIFATMRRLPDEIRKGKFR 296 Query: 342 ADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFP 401 DL++R++V P+++PPLRER DD+ LL +F +QG + ++ A LL+ Y +P Sbjct: 297 EDLYYRINVLPITLPPLRERADDIPLLLHFFVAHFCRKQGRQVLDIAPEAMELLRSYPYP 356 Query: 402 GNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATE 461 GNVREL+HA+ AV + E+ +P + L + + Sbjct: 357 GNVRELKHAVEMAVTFCSDRVITPSCLP-------GEIREGSPALQGWRGDAGALESSRK 409 Query: 462 AFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLG 501 +R+TI L + A A+ L L R K Sbjct: 410 ETERQTIINVLKKTGGRKMAAAKALGISRETLWRKLKEYN 449 >UniRef50_A0LFW8 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Bacteria RepID=A0LFW8_SYNFM Length = 472 Score = 546 bits (1407), Expect = e-154, Method: Composition-based stats. Identities = 151/459 (32%), Positives = 238/459 (51%), Gaps = 7/459 (1%) Query: 42 ALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGL 101 L+ D + + L L+ +++ ++ + + D D +P DGL Sbjct: 5 ILMVDDEQDMLSLLSRILSDRTDHEITSVDDPLQVTELLKKNDYDLVITDLRMP-GRDGL 63 Query: 102 IPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNAL 161 + + + + + I + ++ + FD + + AL Sbjct: 64 GVMEAVKQKNPNTAVIIMTAYGTIES-AIEATRKGAFDYVTK---PFRKERILHVVDQAL 119 Query: 162 LIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGK 221 +QL+ +N + ++ + +IG S M L +I+ VA + VLI+GE+GTGK Sbjct: 120 KWQQLQKENTYLRERLEGKS-QFASLIGSSRAMRTLHNQIDRVAKTSATVLITGESGTGK 178 Query: 222 ELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNG 281 ELVA+ +H+ S R + LNC+ LPES+ ESELFGH++G+FTGA+ ++ G E A++G Sbjct: 179 ELVARELHKHSLRKDEQFIPLNCSTLPESIIESELFGHLRGSFTGALRDKKGLIEEANHG 238 Query: 282 TLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFR 341 TLFLDEIG+LS+A+Q KLLR+LQ G+ + +G + RVD+R +AATN++L E++ G FR Sbjct: 239 TLFLDEIGDLSMAMQVKLLRLLQEGEYKAIGSNTIRRVDIRFIAATNQNLHEKIRRGEFR 298 Query: 342 ADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFP 401 DLF+RL+V + VPPLRER DD+ LL F E+ + + +S N L +P Sbjct: 299 EDLFYRLNVINIVVPPLRERLDDIPLLVHSFLEKYNVLHHKNIKRVSPVTLNALMQRDWP 358 Query: 402 GNVRELEHAIHRAVVLARATRSGDEVI-LEAQHFAFPEVTLPTPEVAAVPVVKQNLREAT 460 GNVRELE+ I R V++A E + L + E L + K+ + Sbjct: 359 GNVRELENTIERGVIMASGNTLETEDVTLPCREAPSSETPLFSEGDIYSMPFKEAKDKLI 418 Query: 461 EAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKR 499 E FQ + I +ALA++ N + AR LHRL + Sbjct: 419 EEFQSQYISKALARHSGNVSQAARESGLKRQYLHRLMRE 457 >UniRef50_Q1PYI3 Strongly similar to sigma 54 response regulatory protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYI3_9BACT Length = 448 Score = 546 bits (1407), Expect = e-154, Method: Composition-based stats. Identities = 159/458 (34%), Positives = 241/458 (52%), Gaps = 17/458 (3%) Query: 43 LLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLI 102 L+ D + + I L +D G+ L D +LP GL Sbjct: 7 LVVEDDKNTLDGLIQILRRDGYTAVGVSSGYDALNQ-LSRESFDIVITDMKLP-GMGGLS 64 Query: 103 PGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALL 162 QE K ++ + + + + I + ++ ++ + + + L Sbjct: 65 LLQEIKKKNSSIAIVVVTAYSSIKS-AVNAVKHGADEYLAK---PVDVEELELVLEKLRE 120 Query: 163 IEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKE 222 +QL QN L + + ++++G SP M ++ K IE VA S +VLI GETGTGKE Sbjct: 121 KQQLVIQNRLLKEELK-DKYTFSELVGGSPQMHRIFKMIEDVAPSTASVLIMGETGTGKE 179 Query: 223 LVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGT 282 LVA AIH S RA P V L+CAAL E + ESELFGH KGAFTGAI +R G+FE+AD GT Sbjct: 180 LVAHAIHYRSERAGKPFVALHCAALSEGILESELFGHEKGAFTGAIQSRKGRFELADGGT 239 Query: 283 LFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRA 342 LFLDE+ E+SL +Q KLLRVL+ G+ +RVG ++ ++VDVR +AATNR+L EEV GRFR Sbjct: 240 LFLDELAEMSLKVQVKLLRVLEKGEFERVGGEKTIKVDVRCIAATNRNLEEEVSEGRFRE 299 Query: 343 DLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPG 402 DLF+RL+V + +PPLRER DD+ +L+ YF + + A L + + G Sbjct: 300 DLFYRLNVINIQMPPLRERKDDIPILSNYFAVKYAKKYKKEIKGFDPEAIKALLSHHWQG 359 Query: 403 NVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEA 462 N+REL++ I RA+VL ++ + + E+ P+ +PV+K + + Sbjct: 360 NIRELQNTIERAIVLCKSDTISVDHLPESIM----------PDNEYIPVIKIPIGTTLKE 409 Query: 463 FQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRL 500 ++E I++ L + + + A++L + K Sbjct: 410 AEKEIIQRTLQITNGSKQSAAKILGISTRKIEYKTKEW 447 >UniRef50_P19323 Formate hydrogenlyase transcriptional activator n=72 Tax=Enterobacteriaceae RepID=FHLA_ECOLI Length = 692 Score = 546 bits (1407), Expect = e-154, Method: Composition-based stats. Identities = 165/515 (32%), Positives = 258/515 (50%), Gaps = 30/515 (5%) Query: 4 SVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYD--SRQFIPLAIDGLAK 61 + +L I + + + + + + D +++ + + L K Sbjct: 186 NFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDK 245 Query: 62 DVLGRRFALEGHP--RLEAIARAGDVVRFPADSELPD-PYDGLIPGQESLKVHACVGLPL 118 + E + ++ +++ PY+ ++ ++ LPL Sbjct: 246 QHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPL 305 Query: 119 FAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNA-------LLIEQLESQNM 171 +G ++G L L + F + LR IA A A+ NA L E+L +N+ Sbjct: 306 MSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENL 365 Query: 172 LPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEA 231 + + ++IG S M + K++E+VA SD VLI GETGTGKEL+A+AIH Sbjct: 366 ALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNL 425 Query: 232 SPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGEL 291 S R +V +NCAA+P + ES+LFGH +GAFTGA + R G+FE+AD +LFLDE+G++ Sbjct: 426 SGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDM 485 Query: 292 SLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVF 351 L LQ KLLRVLQ + +R+G ++ ++ DVR++AATNRDL++ V FR+DL++RL+VF Sbjct: 486 PLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVF 545 Query: 352 PLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAI 411 P+ +PPLRER +D+ LLA F + R G + + A L + +PGNVRELE+ I Sbjct: 546 PIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVI 605 Query: 412 HRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATE-AFQRETIRQ 470 RAV+L R + P++ LP PE V A E + + I + Sbjct: 606 ERAVLLTRGNVL---------QLSLPDIVLPEPETPPAATVV-----ALEGEDEYQLIVR 651 Query: 471 ALAQNHHNWA---ACARMLETDVANLHRLAKRLGL 502 L + + A A+ L L KRLG+ Sbjct: 652 VLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 >UniRef50_D1TMK5 Transcriptional regulator NifA n=1 Tax=Burkholderia sp. CCGE1002 RepID=D1TMK5_9BURK Length = 548 Score = 545 bits (1406), Expect = e-153, Method: Composition-based stats. Identities = 155/528 (29%), Positives = 234/528 (44%), Gaps = 35/528 (6%) Query: 10 NIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYD-SRQFIPLAIDGLAKDVLGRRF 68 + L + +R + L + ++ + + L GL+ Sbjct: 18 EVLKTLDSSRNAEHALKRSLWFLSRARGWRSAFIAVEQPDGKLGGLCSTGLSDGWREGMR 77 Query: 69 ALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQ-ESLKVHACVGLPLFAGQNLIGA 127 G + I + V P P D + + + A +G P+ +G Sbjct: 78 FPSGEGIVGRIQESESAVVVPELDGDPMFDDRTGAVRVSNAERVALLGAPIRHEGRPLGV 137 Query: 128 LTLDGMQPDQFDVF--SDEELRLIAALAAGAL---SNALLIEQLESQNMLPGDATPFEAV 182 L PD VF + L ++A+ A AL A + + + Sbjct: 138 LVALCENPDGKRVFADDLQLLEVVASPIARALLLDREADPSRKSVQEEISRRRNAAAPIY 197 Query: 183 KQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYL 242 + IG S M + ++ VA + VL+ GE+GTGKEL+A+AI+ SPR P V + Sbjct: 198 QVDWAIGRSASMQHVFAQVHQVAPARTTVLLRGESGTGKELIARAIYRLSPRKDQPFVSV 257 Query: 243 NCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRV 302 NCAAL E++ ESELFGH KGAFTGA + R G+FE+A GTLFLDEIG++S + QAKLLRV Sbjct: 258 NCAALTETLLESELFGHEKGAFTGAQTQRKGRFELAHGGTLFLDEIGDISPSFQAKLLRV 317 Query: 303 LQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERG 362 LQ + +RVG +RVDVR++ ATNR+L + V G FRADL++R++V + +PPLRER Sbjct: 318 LQEREFERVGGTTPVRVDVRLIVATNRNLEQMVREGEFRADLYYRINVVSIVLPPLRERR 377 Query: 363 DDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATR 422 +D+ +A YF + G + + A +L +PGNVRELE+ I R +A Sbjct: 378 EDIPEMAQYFLNRFNRENGR-ALHFNEEALRVLSSCYWPGNVRELENCIERTATMAHHDT 436 Query: 423 SGDEVILEA---------QHFAFPEVTLPT------------------PEVAAVPVVKQN 455 G L H + P + + Sbjct: 437 IGRSSFLCEIDQCLTKVLHHLEREDAVRPARPSDVTVSNALNVPAKFGAPERDAGGLGMH 496 Query: 456 LREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 E +RE + A+ + A AR+L + ++ G+K Sbjct: 497 SGEHIPEDERERLLWAMERCGWVQAKAARLLGITARQIGYALRKHGIK 544 >UniRef50_P03027 Nif-specific regulatory protein n=14 Tax=Proteobacteria RepID=NIFA_KLEPN Length = 524 Score = 545 bits (1406), Expect = e-153, Method: Composition-based stats. Identities = 175/515 (33%), Positives = 253/515 (49%), Gaps = 24/515 (4%) Query: 1 MSFSVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLA----- 55 +S + I++ L R Q +++ L + YDS+Q I Sbjct: 16 LSQQFTAMQRISVVLSRATEASKTLQEVLSVLHNDAFMQHGMICLYDSQQEILSIEALQQ 75 Query: 56 IDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVG 115 + + G + + G + P ++ D L L + Sbjct: 76 TEDQTLPGSTQIRYRPGEGLVGTVLAQGQSLVLPRVADDQRFLDRLSLYDYDL---PFIA 132 Query: 116 LPLFAGQ-NLIGALTLDGM-QPDQFDVFSDEELRLIAALAAGALS------NALLIEQLE 167 +PL IG L M + ++ L +A L A + +A Q Sbjct: 133 VPLMGPHSRPIGVLAAHAMARQEERLPACTRFLETVANLIAQTIRLMILPTSAAQAPQQS 192 Query: 168 SQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKA 227 + P TP M+G SP M Q+ I V+ D VL+ GE+GTGKEL+A A Sbjct: 193 PRIERPRACTPSRGFGLENMVGKSPAMRQIMDIIRQVSRWDTTVLVRGESGTGKELIANA 252 Query: 228 IHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDE 287 IH SPRA V NCAALP+++ ESELFGH KGAFTGA+ R G+FE+AD GTLFLDE Sbjct: 253 IHHNSPRAAAAFVKFNCAALPDNLLESELFGHEKGAFTGAVRQRKGRFELADGGTLFLDE 312 Query: 288 IGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHR 347 IGE S + QAKLLR+LQ G+++RVG D LRV+VR++AATNR L EEV G FR DL++R Sbjct: 313 IGESSASFQAKLLRILQEGEMERVGGDETLRVNVRIIAATNRHLEEEVRLGHFREDLYYR 372 Query: 348 LSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVREL 407 L+V P+++PPLRER +D+ LA + + QG + + +S GA LL YS+PGNVREL Sbjct: 373 LNVMPIALPPLRERQEDIAELAHFLVRKIAHSQGRT-LRISDGAIRLLMEYSWPGNVREL 431 Query: 408 EHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRET 467 E+ + R+ VL+ + +VIL P ++ P L + + +R+ Sbjct: 432 ENCLERSAVLSESGLIDRDVILFNHR-----DNPPKALASSGPAEDGWLDNSLD--ERQR 484 Query: 468 IRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 + AL + A AR+L + + + + Sbjct: 485 LIAALEKAGWVQAKAARLLGMTPRQVAYRIQIMDI 519 >UniRef50_B8FJD2 Transcriptional regulator, NifA subfamily, Fis Family n=2 Tax=Bacteria RepID=B8FJD2_DESAA Length = 1038 Score = 545 bits (1405), Expect = e-153, Method: Composition-based stats. Identities = 163/514 (31%), Positives = 251/514 (48%), Gaps = 38/514 (7%) Query: 5 VDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIP----LAIDGLA 60 ++ + + EL +D + ++ T+ ++ + A+ + P A + Sbjct: 546 LEEIMKLGQELATIRNDRDLVRHILATVNRITGAERGAVFLVNKETGKPAVVLRAARNIM 605 Query: 61 KDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFA 120 + + R + A G ++ P L E+ VH+C+ +P+ Sbjct: 606 EQDISRPEFQSSMKMVREAAFTGRARFRLTEA--PRQSHPL----ENKVVHSCICVPMKF 659 Query: 121 GQNLIGALTLD-GMQPDQFDVFSDEELRLIAALAAGALSNALLIEQ-------LESQNML 172 + ++G L +D + P L ++ AA AL NA + EQ LE + Sbjct: 660 RETVLGVLYVDNRIFPSALKESDIRILDFFSSQAAIALDNARIHEQNRALIRKLEEEKRY 719 Query: 173 PGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEAS 232 + E + +G + ++ +++ +AA+D VLI GETG GKEL++ AIHE S Sbjct: 720 LEEQ-QSEFQPPVEFVGECAAVRKVLNDVKKIAATDSTVLILGETGVGKELISTAIHERS 778 Query: 233 PRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELS 292 RA P + +NC+ PE + SELFGH KGAFTGA R G+FE+AD GTLFLDEIG++S Sbjct: 779 SRAGKPFIRVNCSMFPEGLIASELFGHEKGAFTGADKRRLGRFELADGGTLFLDEIGDIS 838 Query: 293 LALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFP 352 +Q +LLRVLQ + +RVG LR D R+LAATNRDLRE+V G+FR DL++RL+V Sbjct: 839 HEVQVRLLRVLQNKEFERVGGRSTLRSDFRLLAATNRDLREDVKTGKFREDLYYRLNVLS 898 Query: 353 LSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIH 412 L +PPLRER +D+ LL YF ++ G R ++ + L Y +PGNVRELE+ I Sbjct: 899 LKIPPLRERKEDIPLLVDYFLDRHAKNLGKPRGAVTPEDLDKLVAYDWPGNVRELENVIE 958 Query: 413 RAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQAL 472 R+ +L+ R + + + + E +R I AL Sbjct: 959 RSAILSSGARLEIPDLFQ----------------SGASFALDREALSLEENERRHILWAL 1002 Query: 473 AQNHHNW---AACARMLETDVANLHRLAKRLGLK 503 + A +LE + L K+LG+K Sbjct: 1003 KKTGGKVRGPGGAAELLEINHNTLFSRIKKLGIK 1036 >UniRef50_B3E6R3 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=B3E6R3_GEOLS Length = 447 Score = 545 bits (1405), Expect = e-153, Method: Composition-based stats. Identities = 156/464 (33%), Positives = 227/464 (48%), Gaps = 19/464 (4%) Query: 39 DASALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPY 98 D L+ D + L D LA + + +G E + R D +P Sbjct: 3 DPLILIVDDDLRMRQLIRDTLASEGINAVLCSDGAEAAEMVLR-QTTDLIITDLMMPQ-I 60 Query: 99 DGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALS 158 DG+ +L+ + + + G I + + ++ +D + Sbjct: 61 DGMELLNLALQANPDCLVVVITGYGSIES-AVQAIKNGAYDYLQK---PFEPDQLLLVVQ 116 Query: 159 NALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETG 218 AL+ +L+ +N + +++G S MT LK I +A D VLI GETG Sbjct: 117 RALVRLRLQDENRQLRQQV--AGCQADELLGASKQMTTLKALITRIAPFDTTVLIQGETG 174 Query: 219 TGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMA 278 TGKEL A+ IH S R + +NC ALPE++ ESELFGH +GAFTGA ++ G E A Sbjct: 175 TGKELAARMIHRLSQRRDQRFLPINCGALPETLLESELFGHARGAFTGADKDKKGLLESA 234 Query: 279 DNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAG 338 D+GTLFLDEI S A Q KLLRVLQ G RVGD VD+RV+AA+N L +EV G Sbjct: 235 DHGTLFLDEINTTSPAFQVKLLRVLQEGSFIRVGDHEPRSVDLRVIAASNTTLEKEVQTG 294 Query: 339 RFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHY 398 RFR+DLF+RL+V +++PPLRER D+ LLA YF + + G+ +S A L++Y Sbjct: 295 RFRSDLFYRLNVVTITLPPLRERNGDIGLLAHYFLTRYARQYGVQLSSISPEALQSLRNY 354 Query: 399 SFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLRE 458 +PGNVRELE+ I RAV++A + + P + E+ Sbjct: 355 HWPGNVRELENIIERAVIMADGNELQPQYLPRFSVSDTPLSSSSDQELLP---------- 404 Query: 459 ATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 +R I + L + +++L +A+L R K+ GL Sbjct: 405 -MAEVERRHIIRVLKATAGHRGKASKLLGISLASLWRKVKQYGL 447 >UniRef50_D2R8T8 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Planctomycetaceae RepID=D2R8T8_9PLAN Length = 457 Score = 545 bits (1405), Expect = e-153, Method: Composition-based stats. Identities = 154/462 (33%), Positives = 226/462 (48%), Gaps = 15/462 (3%) Query: 41 SALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDG 100 + LL D R + L + + A + + R +D L D DG Sbjct: 5 TILLVDDDRHLLESMALWLREQHVEVETAASCQEAIAKM-RDRAFDIVLSDIRLDDG-DG 62 Query: 101 LIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNA 160 S K + L G + ++ ++ FD+ + LI ++ A Sbjct: 63 FDVLAFSRKNRPEQSVILLTGYGTVDT-AIEALRAGAFDLLTK---PLIDEELLLSIERA 118 Query: 161 LLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTG 220 L ++ +N+ ++G M ++ +E +A + VLI+GE+GTG Sbjct: 119 LSQRKVVEENVQLKAQLDL-RFGLENIVGHEHRMQKVFDMVERIADTRATVLITGESGTG 177 Query: 221 KELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADN 280 K L+A+AIH R V + C A+PES+ ESELFGH G+FTGA ++ GKF AD Sbjct: 178 KSLLARAIHRRGSRRDQAFVEVACGAMPESLLESELFGHAAGSFTGATGDKIGKFTQADK 237 Query: 281 GTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRF 340 GT+FLDEIG S +LQ KLLRVLQ + + VG + RVD RV+ ATN L + V AGRF Sbjct: 238 GTIFLDEIGTASASLQVKLLRVLQELEFEPVGSTKTQRVDTRVILATNEKLEQAVAAGRF 297 Query: 341 RADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSF 400 R DL++R++V + VPPLRER D+ LLA +F ++ G S +Q Y++ Sbjct: 298 RQDLYYRVNVINIEVPPLRERIADIPLLANHFLQRTCEESGKRSQGFSDDVITAMQRYNW 357 Query: 401 PGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREAT 460 PGNVREL++ + RAV+L R + E + A V+ PV + L+EA Sbjct: 358 PGNVRELQNVVERAVLLGRGPKVQVEDLTPAI--------ASGQIVSIDPVGNKALKEAL 409 Query: 461 EAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 E+ +R I L + N A A L + L++ KRLGL Sbjct: 410 ESPERAIILDVLEMHQWNRNATADALGINRTTLYKKMKRLGL 451 >UniRef50_Q2LXQ0 Response regulator with sigma 54 interaction domain n=2 Tax=Deltaproteobacteria RepID=Q2LXQ0_SYNAS Length = 502 Score = 545 bits (1405), Expect = e-153, Method: Composition-based stats. Identities = 143/507 (28%), Positives = 225/507 (44%), Gaps = 55/507 (10%) Query: 42 ALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGL 101 L+ D + L K A +G LE + D ++P GL Sbjct: 4 VLIVDDELNMRVVLQAMLKKKGYQVAQAADGLEALE-CLEKEQIDVVVTDLKMPK-LSGL 61 Query: 102 IPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNAL 161 + + + + I +D ++ FD + R L + Sbjct: 62 GLLEHVTSTYPETPVIIITAHGTIET-AVDALKKGAFDYITKPFDR--DELISVIEKAIR 118 Query: 162 LIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGK 221 + + +L + ++G S + ++ K IE VA++ +LI+GETGTGK Sbjct: 119 TRIKNHGEVILAEEEIDK-----YGIVGCSEKIREIYKTIEKVASTKTTILITGETGTGK 173 Query: 222 ELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNG 281 EL+A AIH SPR N + +NC A+ +++ E+ELFG+ KGAFTGA S + GKFE+AD G Sbjct: 174 ELIAHAIHRGSPRKDNAYIKINCGAIAKNLIEAELFGYEKGAFTGAASAKPGKFELADQG 233 Query: 282 TLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFR 341 T+FLDEIGE+ +Q KLL+VLQ +RVG + ++VDVR++AATNRDL +E+ G FR Sbjct: 234 TIFLDEIGEIPRDMQVKLLQVLQDQTFERVGGIKTIQVDVRIIAATNRDLIKEIKEGNFR 293 Query: 342 ADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFP 401 DL++RL+V P+ +PPLRER +D+I L YF ++ + + + + Y++P Sbjct: 294 EDLYYRLNVVPIKMPPLRERKEDIIPLTHYFLDRFNDKLNMDIKGIDPQVLECFKKYNWP 353 Query: 402 GNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREA-- 459 GN+RELE+ I R ++L + E + E + P + LRE Sbjct: 354 GNIRELENLIERIILLTKGNTISPEDVPEEIKTMEDQDLPENEVHEKNPFEEYLLREMEN 413 Query: 460 -------------------------------------------TEAFQRETIRQALAQNH 476 T +++ I + L + Sbjct: 414 FTERLVLMARSEKKREAGDRLEEDSLDSTEKDQGVYRKFIKSKTAEVEKKMIEKILEECS 473 Query: 477 HNWAACARMLETDVANLHRLAKRLGLK 503 N A+ L L + L+ Sbjct: 474 GNITHAAKRLGFSRKGLQIKMVKYNLR 500 >UniRef50_A7HGB6 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Cystobacterineae RepID=A7HGB6_ANADF Length = 490 Score = 545 bits (1405), Expect = e-153, Method: Composition-based stats. Identities = 160/476 (33%), Positives = 234/476 (49%), Gaps = 12/476 (2%) Query: 32 LRQVLECDASALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPAD 91 + + +L D + A++ L L+ D D Sbjct: 1 MADGTDTKPVRVLVVDDEPTLLRALEALLGQKGYSVVGLDSPIVATQRLAHEDFDVALLD 60 Query: 92 SELPDPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSD--EELRLI 149 ++P GL V + + G + L ++ +D + E++ L+ Sbjct: 61 IKMPQ-LSGLELLSAVKHRRPEVEVIMMTGHATVET-ALAAVRSGAYDYLTKPFEDVELV 118 Query: 150 AALAAGALSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDL 209 A A A +L ++ + E ++G S + ++ + IE VA S Sbjct: 119 ARAVAKAAERKMLFDRNRRLETQLREK---EGGAPEGLVGNSAPIREVVRMIEAVAYSAT 175 Query: 210 NVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAIS 269 VL++GE+GTGKELVA+A+H SPR P V LNC AL E++ ESELFGHVKGAFTGA Sbjct: 176 TVLVTGESGTGKELVARALHARSPRRAQPFVALNCGALTETLLESELFGHVKGAFTGAQR 235 Query: 270 NRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNR 329 ++ G F+ AD GT+FLDEIG++ A Q +LLRVLQ G+++RVG +RVDVRV+AAT+R Sbjct: 236 DQKGLFDAADGGTIFLDEIGDIPPATQVRLLRVLQEGELKRVGSAESVRVDVRVIAATHR 295 Query: 330 DLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSA 389 DL V AG+FR DLF+RL+V + +P LR+R DDV LLA +F + R G L+ Sbjct: 296 DLPRLVKAGKFREDLFYRLNVINIPLPSLRDRVDDVPLLAHHFLRRYAERLGKRVRALAP 355 Query: 390 GARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAV 449 A LL Y +PGNVRELE+AI RAVVL R + A + P Sbjct: 356 DAIELLCGYRWPGNVRELENAIERAVVLCRGEAVTGGDLPPAVTGRTAPLVREAPAGGDE 415 Query: 450 PV-----VKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRL 500 V ++ F++ + + +N +A AR D +N R+ ++ Sbjct: 416 AVWLTMSYATAKEQSLRRFEKGYVETLMRHCDNNISAAARKAGMDRSNFKRVLRKY 471 >UniRef50_Q6MMW8 Acetoacetate metabolism regulatory protein atoC n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MMW8_BDEBA Length = 470 Score = 545 bits (1404), Expect = e-153, Method: Composition-based stats. Identities = 145/466 (31%), Positives = 225/466 (48%), Gaps = 16/466 (3%) Query: 42 ALLRYDSRQFIPLAIDGLAKDVLGRRF----ALEGHPRLEAIARAGDVVRFPADSELPDP 97 L+ D + I L + F A G L+ + + D ++P+ Sbjct: 7 TLIVDDEAELRRSVISILKSTMPEIEFTIEEAATGKEALDKVKQQQW-DLVLMDVKMPE- 64 Query: 98 YDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRL-IAALAAGA 156 +GL + + L + + + ++ +D +A + + Sbjct: 65 MNGLEALTAIKEHDPRTFVVLMTAHSNL-HDAVVAIKEGAYDYVEKPVQPQQLAEIVRKS 123 Query: 157 LSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGE 216 L LI L N + D E ++G S M ++ I + D VL+ GE Sbjct: 124 LEARDLISSLAMSNPVFDDDIESE------IVGGSSKMKEVFNLIYRLCKVDTTVLVRGE 177 Query: 217 TGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFE 276 GTGKELVA+AIH SPR V +NC A+PE++ ESELFGH KGAFTGA+ + GKF+ Sbjct: 178 NGTGKELVARAIHFNSPRKSGAFVAINCGAIPENLMESELFGHEKGAFTGAVERKIGKFQ 237 Query: 277 MADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVL 336 +A+NGTLFLDEIGEL +Q KLLRVLQ VG +R ++ R++AATNR+L + + Sbjct: 238 LANNGTLFLDEIGELRPDMQVKLLRVLQERKFTPVGSNREVKTTTRIIAATNRNLEKMME 297 Query: 337 AGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQ 396 G FR DLF+RL+V P+ +PPLRER DD+ LAG F ++ + G ++ A ++L+ Sbjct: 298 EGEFREDLFYRLNVMPIFLPPLRERADDIEALAGNFIKKFSKQHGRQITAITPEALDMLK 357 Query: 397 HYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNL 456 Y +PGN+RELE+ I R+ ++ + + + + ++ + T V + Sbjct: 358 SYRWPGNIRELENIIERSFIVENSHQITVDSLPDSIKLTPKDGADKTASVGY--SGPLDF 415 Query: 457 REATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 E ++E I AL N+ L R ++ G+ Sbjct: 416 DAFKEEMEKEFIVSALKANNGRINQTVAQANIPKNTLLRKIRKYGI 461 >UniRef50_D0TB92 Two-component system response regulator n=1 Tax=Bacteroides sp. 2_1_33B RepID=D0TB92_9BACE Length = 455 Score = 545 bits (1404), Expect = e-153, Method: Composition-based stats. Identities = 146/467 (31%), Positives = 231/467 (49%), Gaps = 13/467 (2%) Query: 38 CDASALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDP 97 A ++ D + + L +D + A G ++A+ + D ++P Sbjct: 1 MKAKIVVADDEPRIRAMIALLLKEDGYEVQTAANGQEAVDALL-SFRPDVILLDQQMPV- 58 Query: 98 YDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGAL 157 G+ ++ ++ + + +L +D ++ +D E + Sbjct: 59 LTGVEALEKIKRLCPNQVVVFITAFGSV-SLAVDAVKKGAYDFI---EKPFDNDKLLLTV 114 Query: 158 SNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGET 217 S A+ +++ + + T +IG G+ Q+ ++E VA +D VLI GE+ Sbjct: 115 SRAVEHCRMKGEIKHLKNKLGDMN---TGIIGEKSGLRQVMLQVERVAETDATVLIHGES 171 Query: 218 GTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEM 277 GTGKEL+A AIH+ S R P V +NC A+P ++ ESELFGH KGAFT A ++G FE Sbjct: 172 GTGKELIAWAIHDRSKRVSQPFVAINCGAIPLTLMESELFGHEKGAFTDAKETQAGTFER 231 Query: 278 ADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLA 337 A+ GTLFLDEIGEL L Q KLLRVL+ I R+G + + V+VR++AATNR+L EEV Sbjct: 232 ANGGTLFLDEIGELPLDAQVKLLRVLEERKITRIGGKKAIPVNVRIVAATNRNLEEEVRL 291 Query: 338 GRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQH 397 G+FR DL +RL+VF + +PPLRER +D+ LLA +F + LS ++ A + L Sbjct: 292 GKFRLDLLYRLNVFTIQLPPLRERKEDIPLLAAFFLRKHNSLLNLSIESITPEAMDQLCA 351 Query: 398 YSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLR 457 Y +PGNVR+LE+A+ A++L + + + +LR Sbjct: 352 YDWPGNVRDLENAVQSAMILCVDRQIHPGHLP----ARIKSYQMERLTAPQEAEEDTSLR 407 Query: 458 EATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLKD 504 + ++ I AL ++++N A L L KR L + Sbjct: 408 DTNSLAEKARILSALQKHNYNRTLTAEALNISRKTLFNKMKRYNLGN 454 >UniRef50_B8JAZ2 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Anaeromyxobacter RepID=B8JAZ2_ANAD2 Length = 481 Score = 544 bits (1403), Expect = e-153, Method: Composition-based stats. Identities = 153/463 (33%), Positives = 229/463 (49%), Gaps = 19/463 (4%) Query: 41 SALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDG 100 +L D ++ + L + E + D +P DG Sbjct: 29 GKVLVVDDQKNMRATTAILLRQAGHVVEEAEDGASATQRVQHESFDVVLTDLRMP-TVDG 87 Query: 101 LIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNA 160 + + + + + I + ++ ++ +D + + ++ A Sbjct: 88 MEVLRAVQQASPETQVIVMTAYGTIES-AVEAIRRGAYDFLAKPFKE---SEVLLRVAKA 143 Query: 161 LLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTG 220 L +L + L + + ++G SP M ++ + VA +D VL++GE+GTG Sbjct: 144 LEKRRLLGEVNLFAEEFR-KRYGLEHIVGRSPAMREVLDRVLRVAPTDATVLVTGESGTG 202 Query: 221 KELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADN 280 KELVA+A+H S R+ P V +NCAA+ +++ ESELFGH +GAFTGA R G FE A+ Sbjct: 203 KELVARALHVTSRRSDKPFVPVNCAAITDTLLESELFGHARGAFTGATRARRGMFEEANG 262 Query: 281 GTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRF 340 GTLF+DEIGE S QAKLLR LQ G+I+RVG+ ++V+VR++AATN+DLR + RF Sbjct: 263 GTLFIDEIGETSPGFQAKLLRALQEGEIRRVGESSPVQVNVRIIAATNQDLRRAIAERRF 322 Query: 341 RADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSF 400 R DLF+RL+V PL +PPLRER +DV LLA +F ++ R G RV L+ A L + + Sbjct: 323 REDLFYRLNVVPLRIPPLRERREDVPLLAAHFLQRFVQRTGSERV-LTPEAVASLVAHDW 381 Query: 401 PGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREAT 460 PGNVRELE+ I +A L + A L +A Sbjct: 382 PGNVRELENIIEQAAALCTGREIRAADV------------QIEARAAPAGGAGVTLADAV 429 Query: 461 EAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 E +R I ALA+ ++ AR L L R KRLG++ Sbjct: 430 EDTERRAITAALARCGNDLGRVARDLGISGTTLWRKMKRLGIE 472 >UniRef50_B8FZI3 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8FZI3_DESHD Length = 461 Score = 544 bits (1402), Expect = e-153, Method: Composition-based stats. Identities = 140/468 (29%), Positives = 232/468 (49%), Gaps = 8/468 (1%) Query: 36 LECDASALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELP 95 + D ++ D + + + + LE I R D ++P Sbjct: 1 MSEDRHIVIIDDEPDMLETCARVIHRMGYKCTTYEDSCEALEEIYRL-QPDLIITDIKMP 59 Query: 96 DPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAG 155 DG +++ + + G + + + M+ +D S Sbjct: 60 Q-CDGFEVLEKAKVCTPKARVIVITGYASVDS-AVQAMKEGAYDYLSK---PFPIEQLQL 114 Query: 156 ALSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISG 215 ++ AL L +N L E + +IG G+ + + I ++ SD ++LI G Sbjct: 115 TINKALQHIALTEENQLLRAQL-QEGLNTDNIIGARGGLQDVFETIGKISNSDASILILG 173 Query: 216 ETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKF 275 E+GTGKE++A+AIH+ S R+ P + ++CA+LPE++ ESELFG+ +GAFTGA + + G Sbjct: 174 ESGTGKEVIARAIHKNSRRSTGPFIPVDCASLPENLLESELFGYERGAFTGANTTKQGLL 233 Query: 276 EMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEV 335 EMA GTLFLDE+GEL+ A+QAKLLR L+ I+RVG +R + +D+RVLAATNRDL + + Sbjct: 234 EMAHGGTLFLDELGELTPAMQAKLLRTLEERAIRRVGGNRLINIDIRVLAATNRDLEKAI 293 Query: 336 LAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLL 395 A FR DL++R++V L +P L ER D+ LL +FC++ + A + Sbjct: 294 RAKEFREDLYYRINVITLKLPVLHERQQDIPLLVNHFCKKFSQDMNKKVSGFTPEAMQAM 353 Query: 396 QHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQN 455 + Y++PGN+REL + + RA+ L+ + + E + LP E + Sbjct: 354 KSYAWPGNIRELRNVVERAISLSGSEMVEISDLPEKV-IGGQKKILPEQENLGAFSFHEA 412 Query: 456 LREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 + F+ E +++ L ++H N A+ D +HRL + L+ Sbjct: 413 KDICLKRFEMEYLKELLDKHHGNITQAAKSAGMDRKTIHRLINKYDLQ 460 >UniRef50_Q2RVQ1 Transcriptional regulator, NifA, Fis family n=3 Tax=Alphaproteobacteria RepID=Q2RVQ1_RHORT Length = 600 Score = 543 bits (1401), Expect = e-153, Method: Composition-based stats. Identities = 158/575 (27%), Positives = 257/575 (44%), Gaps = 75/575 (13%) Query: 2 SFSVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSR-QFIPLAIDGLA 60 S + L ++ L + + ++ L ++ + D++ Q +A+ G+ Sbjct: 22 SLPLLTLYEVSKILGSTLDLEHSLHDVLNVLASYMQMRRGVVTLKDAQRQLEVVAVSGMT 81 Query: 61 KDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYD-GLIPGQESLKVHACVGLPLF 119 A + + + P+ + P +V + + +P+ Sbjct: 82 LRNAVEGEARYPLAVAQEVVSTAMPMIVPSMAADPRFAAFAAEADGLDDEVQSMICVPIK 141 Query: 120 AGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQL------------E 167 G G+L+++ + + ++R + +A L ++ Sbjct: 142 GGVKPFGSLSIERHRDRGTRFKFEHDVRFLTMVATLIAQTVSLERRVVGDRDRLIEEKAR 201 Query: 168 SQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKA 227 + LP P + ++G S M ++ ++ +A S VL+ GE+GTGKEL+A+A Sbjct: 202 LEKALPKREKPLKGTILENVVGRSSAMMKISAQVRQIAPSRATVLLRGESGTGKELIAQA 261 Query: 228 IHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDE 287 IH SPR+ P + +NCAALPE++ ESELFGH KGAFTGA + R G+FEMA GTLFLDE Sbjct: 262 IHYLSPRSDKPFIKVNCAALPETLLESELFGHEKGAFTGATTERKGRFEMASGGTLFLDE 321 Query: 288 IGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHR 347 IGE+++ QAKLLRVLQ G+ +RVG + ++VDVR++AATN+DL + V G FRADL++R Sbjct: 322 IGEITVHFQAKLLRVLQEGEFERVGGGKTIKVDVRLVAATNKDLEDAVTRGEFRADLYYR 381 Query: 348 LSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVREL 407 ++V P+ +P LRER +DV LLA +F + G S + S GA + +FPGNVREL Sbjct: 382 INVVPIFLPALRERREDVPLLAQFFLTKFNEENGRS-LRFSEGALTAMGGCNFPGNVREL 440 Query: 408 EHAIHRAVVLARATRSGDEVILEAQHFAFP------------------------------ 437 E+ + RA LA+ + + Sbjct: 441 ENCVCRAATLAQDEVIQELGLSCHNDKCLSASLWQRRGSGRAIGGLAPVTEQNDPDTTSV 500 Query: 438 ----EVTLPTPEVAAVPVVKQ--------------------------NLREATEAFQRET 467 ++ P A P + + + ++A QRE Sbjct: 501 AWEGDLRPAAPARAGTPPGRGYAGPGESADSPSSPSAPPPAAAPAAEDGEDESDAGQRER 560 Query: 468 IRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 I A+ + A AR+L + K+ + Sbjct: 561 IVHAMEKAGWVQAKAARLLGMTPRQIGYALKKHDI 595 >UniRef50_C1F1R9 Mutant NtrC-like activator n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F1R9_ACIC5 Length = 495 Score = 543 bits (1401), Expect = e-153, Method: Composition-based stats. Identities = 145/459 (31%), Positives = 223/459 (48%), Gaps = 7/459 (1%) Query: 42 ALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGL 101 L+ D + + ++ A +G LE + R D ++P DG+ Sbjct: 27 VLIVEDEPHALTGLAELVSAWDYRTETARDGIEALEKV-RGWQPAIVVTDLKMPR-MDGM 84 Query: 102 IPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNAL 161 + ++ + + Q I + ++ M+ FD + + LSN Sbjct: 85 QLLERLNQMDGSRAVIVLTAQGSIES-AVEAMKIGAFDYLQK---PVDSVRLRTILSNVS 140 Query: 162 LIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGK 221 +++ + + M+G S M + IE VA ++++VLI+GE+GTGK Sbjct: 141 RQLEMQREMAATRTRLRSMS-GLGLMVGTSQPMKDVFSLIERVAPTNVSVLITGESGTGK 199 Query: 222 ELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNG 281 ELVAK +HE SPR P V +NCAA+PE++ ESE+FGH KGAFTGAI R+G FE+A+ G Sbjct: 200 ELVAKTLHELSPRKNKPFVAVNCAAIPETLIESEIFGHEKGAFTGAIERRAGCFELAEEG 259 Query: 282 TLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFR 341 TL LDEIGE+ + QAKLLRVL+ +R+G +DVRVLAATN++ + V G R Sbjct: 260 TLLLDEIGEMPIGTQAKLLRVLEDRRYRRLGSKVETPIDVRVLAATNKNPDQAVADGELR 319 Query: 342 ADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFP 401 DL++RL+VF + +PPLRE +D+ +A + + + + L Y +P Sbjct: 320 GDLYYRLNVFNIHMPPLREHKEDIPAIAQRMIADMTSKHDRAIEGMDDEMQARLLSYDWP 379 Query: 402 GNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATE 461 GNVREL + + RAV+L R + + A P T V+ + + Sbjct: 380 GNVRELRNTMERAVILCTGDRLQAQHLPPGFGTARPLKTAAVTAEPPANAVQVEVGTTVD 439 Query: 462 AFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRL 500 +R I + L H+N A +L + LH K Sbjct: 440 EAERLLILKTLESTHNNKTRAAEILGISLKTLHNKLKEY 478 >UniRef50_Q12MS3 Sigma-54 factor, interaction region n=2 Tax=Alteromonadales RepID=Q12MS3_SHEDO Length = 538 Score = 543 bits (1401), Expect = e-153, Method: Composition-based stats. Identities = 239/533 (44%), Positives = 315/533 (59%), Gaps = 36/533 (6%) Query: 6 DVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLAKDVLG 65 L +IA++L + + + +QR +T + QV+ CDA ALL Y + +P+A+DGL +VLG Sbjct: 4 QTLLDIALDLSQSLPKKALYQRFMTAVNQVMPCDAVALLEYQGHELVPVAVDGLLPEVLG 63 Query: 66 RRFALEGHPRLEAIARAGDVVRFPADSELPDPYDG--LIPGQESLKVHACVGLPLFAGQN 123 F+ E HPRL+AI + +RF ADSEL DPYDG +I + L VHAC+G LF Sbjct: 64 MGFSPEDHPRLQAIMASKQPIRFNADSELADPYDGYLVIDPKRVLDVHACIGCSLFVEGR 123 Query: 124 LIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDAT---PFE 180 L+G LTLD + FD D + +AALAA + N L+ QL+ Q D + Sbjct: 124 LVGVLTLDALNVGAFDAIDDITIATLAALAAATIRNVNLLNQLDRQQYKLDDNDSVFKQK 183 Query: 181 AVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLV 240 +K++ IG +P M LK +I IVA S+L+V+I GETG GKELVA+++H S R LV Sbjct: 184 PLKKSDFIGETPCMQALKDDIRIVANSELSVIIGGETGVGKELVARSLHAQSKRRAQALV 243 Query: 241 YLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLL 300 +NCAALP+++AESELFGH KGAFTGA +R GKFE+A GTLFLDE+GELSL LQAKLL Sbjct: 244 QVNCAALPDTLAESELFGHSKGAFTGAAKDRMGKFELAHQGTLFLDEVGELSLELQAKLL 303 Query: 301 RVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRE 360 RV+Q G+IQR+G DR + VDVR++AA+NR+L + V G FR DL+HRL V+PL+VPPLRE Sbjct: 304 RVIQEGEIQRIGLDRNIHVDVRIIAASNRNLLQRVKEGLFREDLYHRLCVYPLNVPPLRE 363 Query: 361 RGDDVILLAGYFCEQCRLRQGL---SRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVL 417 R DD+ LL G + + GL V L+ A LQ Y +PGNVREL+H + RA + Sbjct: 364 RQDDIPLLCGNILTNLKHKIGLSSAKTVRLTQAAMQKLQGYPWPGNVRELQHVLMRAALK 423 Query: 418 ARAT-----RSGDEVILEAQHFAFPE-----------------------VTLPTPEVAAV 449 A A + A E Sbjct: 424 ASAEAKGITVIQLHHLTFACEPMSQGLTELTAFNSNSPDSNPSTSDETFAAANREEKVEP 483 Query: 450 PVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 PV+ ++ + FQR+ IRQ+L N WA AR L+ D NLHR AKRLGL Sbjct: 484 PVISRSFNDRVADFQRQVIRQSLDDNSQVWAKAARQLQLDRGNLHRQAKRLGL 536 >UniRef50_C7PQF6 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PQF6_CHIPD Length = 1082 Score = 543 bits (1400), Expect = e-153, Method: Composition-based stats. Identities = 156/527 (29%), Positives = 260/527 (49%), Gaps = 43/527 (8%) Query: 6 DVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLAKDVLG 65 ++L + + ++ R G + + L+ + + + +++ + + ++ Sbjct: 560 EILLSFSADIARTRGAEALIAVMRQRLKSIFHFNDITVGIFNAEKTAFKVLVADVEERRT 619 Query: 66 RR---------FALEGHPRLEAIARAGDVVRF---PADSELPDPYDGLIPGQESLKVHAC 113 + + + F + P + G+ E + Sbjct: 620 SHPEFKEIAFAEYPIADGIHDMLLHSDKPELFYIENLLMKNPGRHPGIQFIFE-RGIKEI 678 Query: 114 VGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALL----------- 162 G+ L IG +T+ + + F L+ I+ A A++N L Sbjct: 679 AGVKLVNQNEDIGFITMLSEERNSFRHRDLHLLKGISDQVAVAVANILADEKIGQQLKEI 738 Query: 163 ---IEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGT 219 E+LE + + T +IG P M ++ + V+ + VLI GETGT Sbjct: 739 NGYKEKLEEEKLYLQQEI-SSVYTHTDIIGAGPEMQRVFHMLSQVSFAQSTVLILGETGT 797 Query: 220 GKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMAD 279 GKEL+A+AIH SPR +V +NCAALP ++ ESELFGH +G+FTGAI R GKFE+A+ Sbjct: 798 GKELIARAIHNGSPRKNKLMVKVNCAALPANLIESELFGHERGSFTGAIERRIGKFELAN 857 Query: 280 NGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGR 339 +GTLFLDEIGE+ L LQ KLLR +Q +I+R+G ++ DVR++AATNR+L++EV GR Sbjct: 858 HGTLFLDEIGEMPLDLQVKLLRAIQEREIERIGGKSTIKTDVRIIAATNRNLQKEVAEGR 917 Query: 340 FRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYS 399 FR+DL++RL+VFP+ +PPLR+R +D+ LLA +F E+ G + LS+ A L Y+ Sbjct: 918 FRSDLYYRLNVFPIVLPPLRDRKEDISLLAAHFIERFARSTGRKNIKLSSTAMKQLTAYN 977 Query: 400 FPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREA 459 +PGNVRELEH + R+++L + + + P+ A +++ Sbjct: 978 WPGNVRELEHVLERSILLTQGNIIREIHL------------SSQPKSEAKVRQEEDFSRT 1025 Query: 460 TEAFQRETIRQALAQNHHNW---AACARMLETDVANLHRLAKRLGLK 503 + +R+ I L + A +L V+ L+ ++LG++ Sbjct: 1026 LDEMERDYILGVLNKCKGKIFGPGGAAEILGLHVSTLNHRIRKLGIQ 1072 >UniRef50_A0LND9 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Deltaproteobacteria RepID=A0LND9_SYNFM Length = 483 Score = 543 bits (1400), Expect = e-153, Method: Composition-based stats. Identities = 151/478 (31%), Positives = 228/478 (47%), Gaps = 27/478 (5%) Query: 42 ALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGL 101 L+ D + ++ G LEA+ R D ++P +GL Sbjct: 7 ILIVDDDEGLVHFLTRFFSRKEYEVLSCNSGTAALEAVGR-EPFDLILLDYKMP-GKNGL 64 Query: 102 IPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNAL 161 +E ++ + + + ++ M+ +D R A +AL Sbjct: 65 ETLKEIRRLQVKTPIIVMTAYGTMDT-AIEAMKLGAYDYLLKPFDRNGLERIA---RDAL 120 Query: 162 LIEQLESQNMLPGDATPFEAVKQTQ---MIGLSPGMTQLKKEIEIVAASDLNVLISGETG 218 + +L + + + A +IG M ++ K I VA D+ VLI+GE+G Sbjct: 121 EVNRLMKEVVSFPAHSLTSARVPKGEIKIIGNHTRMQEVYKLIGQVANKDVTVLITGESG 180 Query: 219 TGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMA 278 TGKELVA+A++ S R P + +NCAA+PE++ ESELFG+ +GAFTGA GKFE Sbjct: 181 TGKELVARALYHHSDRKNKPFLGVNCAAIPETLFESELFGYERGAFTGAERTHIGKFERC 240 Query: 279 DNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAG 338 GTLF DEI E+ L+ QAKLLR LQYG+I+RVG ++ L+VDVRVL ATN++L V G Sbjct: 241 HGGTLFFDEIAEMPLSTQAKLLRALQYGEIERVGAEQPLKVDVRVLVATNKNLERAVEQG 300 Query: 339 RFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHY 398 RFR DL+ RL + + +PPLRER +D+ L YF + + GA L+ + Sbjct: 301 RFREDLYWRLKIISIHLPPLRERPEDIPALVDYFLVRFGEEYKSPIRRIEDGALAKLKSH 360 Query: 399 SFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLRE 458 ++PGNVRELE+ + RAVVL+ +E + E + P + V++ L E Sbjct: 361 AWPGNVRELENTVRRAVVLSSGDVIREEHL--RFDSGGHEPSSPEWDKNPWARVERKLEE 418 Query: 459 ----------------ATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRL 500 + +R + + L Q +N AR+L L K+ Sbjct: 419 LIPDLLQVGGEAMHESIIDMVERILLSKVLEQCGNNQVKAARVLGVSRNTLRHRMKKF 476 >UniRef50_B8DQY9 Transcriptional regulator, NifA subfamily, Fis Family n=8 Tax=Desulfovibrio RepID=B8DQY9_DESVM Length = 579 Score = 543 bits (1400), Expect = e-153, Method: Composition-based stats. Identities = 160/563 (28%), Positives = 242/563 (42%), Gaps = 65/563 (11%) Query: 2 SFSVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSR--QFIPLAIDGL 59 S + L I+ R + + ++ L + L + + D Q + A GL Sbjct: 7 SLKLKALYAISQVFDRALDLEQALGEVLRVLSETLSMKRATITLPDRETGQLVIAASHGL 66 Query: 60 AKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLF 119 + GR I + P D + + +G+P+ Sbjct: 67 TPEERGRGVYRLDEGVTGTIFQTARPYIVRDVRTDPLFLDRTGARKVEKGKISFLGVPIL 126 Query: 120 AGQNLIGALTLDGMQPDQF-DVFSDEELRLIAALAAGALSNALLIEQ----LESQNMLPG 174 IG L +D + D E L ++A L A LS + + L +N+ Sbjct: 127 KQGAPIGVLNVDRLFSDDVSTSEDVEFLGIVATLVAQFLSLNEQLNERVDTLRRENVKLR 186 Query: 175 DATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPR 234 E ++G S M ++++IE VA + VL+ GE+G GK L+A+ +H S R Sbjct: 187 TRVLDERGDY--IVGRSAAMLDVQRQIERVAPTRATVLLLGESGVGKTLIARLLHNLSDR 244 Query: 235 AVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLA 294 V+P V +NCA++PE++ E+ELFGH KGAFTGA + R+G+FE A GT+FLDEIGEL Sbjct: 245 MVHPFVKVNCASIPETLLEAELFGHEKGAFTGAAAVRAGRFEEAHRGTIFLDEIGELPPG 304 Query: 295 LQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLS 354 +QAKLLRV+Q + +R+G ++ RVDVR++AATNRDL GRFR DL++RL VFP+ Sbjct: 305 IQAKLLRVIQDREFERLGSNQTHRVDVRIVAATNRDLALLSEQGRFRQDLYYRLCVFPIR 364 Query: 355 VPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRA 414 VP LRER DDV L +F + + L+ A LL+ + +PGNVRE+E+ I R Sbjct: 365 VPSLRERPDDVERLLNHFLAKAARDY-RRVITLAPDALGLLRRHEWPGNVREMENLIERL 423 Query: 415 VVLARATRSGDEVILEAQHFAFPEVTLP-------------------------------- 442 +L+ + + + + E P Sbjct: 424 AILSESGQIDRRFLEPLLEHSATENAQPDWPYPVHPAQQAHQAHQAPHAPLPGGMSGSMA 483 Query: 443 ------TPEVAAVPVVKQNLREA-----------------TEAFQRETIRQALAQNHHNW 479 T P +A +R I AL +N Sbjct: 484 GGMAGNTAPGHGAPHGATAAHDAHAGHGDADLHGDAHPTTLRDIERNEIIAALRRNGWVQ 543 Query: 480 AACARMLETDVANLHRLAKRLGL 502 A L + +++GL Sbjct: 544 HRAAAALGITPRQMGYRIRKMGL 566 >UniRef50_Q127H6 Transcriptional regulator, NifA subfamily, Fis family n=14 Tax=Proteobacteria RepID=Q127H6_POLSJ Length = 552 Score = 543 bits (1399), Expect = e-153, Method: Composition-based stats. Identities = 249/524 (47%), Positives = 333/524 (63%), Gaps = 25/524 (4%) Query: 5 VDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLAKDVL 64 + L + +L R + +R++RL+ +R +L CDA+ALLR D +PLA++GL+ D + Sbjct: 7 LKALVPLVDDLSREMPDGERYRRLLEAVRALLPCDATALLRLDGAALVPLAVNGLSSDTM 66 Query: 65 GRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQES-LKVHACVGLPLFAGQN 123 GRRF +E HPR + + AG +RFP D ELPDPYDGL+ G L+VH C+G P+ G+ Sbjct: 67 GRRFKVEEHPRFKRLLEAGGPMRFPVDCELPDPYDGLVEGLHGHLEVHDCMGCPVQVGEK 126 Query: 124 LIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQL--ESQNMLPGDATPFE- 180 G LT+D + +F +L+ A+LAA +S +E+L +++ T E Sbjct: 127 NWGVLTIDALNSQRFSAVDLGDLQAFASLAAATVSVVQRMERLTLRAEDERLRADTYREL 186 Query: 181 --AVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNP 238 +IG S +L +EI +V S+L VLI+GETG GKELVA+A+H ASPRA P Sbjct: 187 AAESTPPALIGQSAAHQRLLEEIAVVGNSELTVLITGETGVGKELVAQALHAASPRAARP 246 Query: 239 LVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAK 298 L+ LNCAALPE++ ESELFGHV+GAF+GA+++R GKFE+A+ GTLFLDE+GELSLA+QAK Sbjct: 247 LISLNCAALPETLVESELFGHVRGAFSGAVADRRGKFELANGGTLFLDEVGELSLAVQAK 306 Query: 299 LLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPL 358 LLRVLQ G +QR+G DR +VDVRV+AATNRDL EV AGR+RAD +HRLSV+PL VPPL Sbjct: 307 LLRVLQNGQLQRLGSDREHQVDVRVIAATNRDLAHEVRAGRYRADFYHRLSVYPLVVPPL 366 Query: 359 RERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLA 418 RERG DV+LLAGYF EQ R R GL + + A A+ L + +PGNVRELEH + R+ + A Sbjct: 367 RERGHDVLLLAGYFLEQNRSRLGLGSLRMDADAQASLLAHDWPGNVRELEHLVGRSALKA 426 Query: 419 RATRSGDEVIL----EAQHFAFPEVTLPTP---------------EVAAVPVVKQNLREA 459 A G IL P + A + +LR + Sbjct: 427 LAGVPGRPRILSLTASHLDLPAPASWGASAPDASGSKDAAVQEGMPDAGGAALPVDLRTS 486 Query: 460 TEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 E QR+ I +LA++H+NWA+ AR L ANL RLAKRLGL+ Sbjct: 487 MEWHQRQRIAASLARHHNNWASAARELGLHRANLVRLAKRLGLR 530 >UniRef50_Q1D217 Sigma-54 dependent DNA-binding reponse regulator CrdA n=7 Tax=Cystobacterineae RepID=Q1D217_MYXXD Length = 498 Score = 542 bits (1398), Expect = e-152, Method: Composition-based stats. Identities = 164/503 (32%), Positives = 237/503 (47%), Gaps = 48/503 (9%) Query: 38 CDASALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDP 97 AS L+ D + + L A G L+ + A V D ++PD Sbjct: 1 MPASVLIVDDEKNILLTLSQSLQLAGYQTHLANSGQVALD-VVSARPVDAVLMDVKMPD- 58 Query: 98 YDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGAL 157 DGL + ++ + + + +G I + Q D E + AL Sbjct: 59 MDGLTALAKLTELKPELPVIMMSGHGTIDT-AVKATQLGARDFL---EKPIARERLLVAL 114 Query: 158 SNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGET 217 N L + ++ + M+G P M ++ I+ A S+ VLI+GE Sbjct: 115 RNVLKHQAAMAELQELRAQL-----GRYDMVGSGPAMQRIFSLIQRTAPSEGRVLITGEN 169 Query: 218 GTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEM 277 GTGKEL+A+A+H+ S R P V LNCAA+P + ESELFGH KGAFTGA+S R GKFE+ Sbjct: 170 GTGKELIARALHQHSKRKGQPFVKLNCAAVPHELIESELFGHEKGAFTGAVSVRRGKFEL 229 Query: 278 ADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLA 337 A GTLFLDEIG++ A+QAKLLRVLQ G+++RVG +VDVRV+AATN++L E+ A Sbjct: 230 AHEGTLFLDEIGDMPQAMQAKLLRVLQEGELERVGGAETHKVDVRVVAATNKNLEAEIAA 289 Query: 338 GRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQH 397 GRFR DL++R++V + PPLRER +D+ L F ++ + G + LS A ++ Sbjct: 290 GRFREDLYYRINVVQIHSPPLRERREDLPDLIKTFLDEACAKNGRRPLTLSPDALAVMSA 349 Query: 398 YSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTL---------------- 441 Y +PGNVREL + + R +L LE Sbjct: 350 YDYPGNVRELRNLVERLAILCEGPIVTRTDALELLPRGRNVPPPAPVETPASPLPPPSPE 409 Query: 442 ---------------------PTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWA 480 P V P + RE E +RE I+ L+ H N Sbjct: 410 AAVVLASSTPAPAIAAPVATEPPAPVGFRPRADRTFREQVEDAEREIIQHVLSHTHDNVT 469 Query: 481 ACARMLETDVANLHRLAKRLGLK 503 AR+L+ + + ++ K LGL+ Sbjct: 470 EAARLLDLERGHFYKKMKALGLR 492 >UniRef50_Q2RHS4 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Bacteria RepID=Q2RHS4_MOOTA Length = 748 Score = 542 bits (1398), Expect = e-152, Method: Composition-based stats. Identities = 154/374 (41%), Positives = 208/374 (55%), Gaps = 8/374 (2%) Query: 131 DGMQPDQFDVFSDEELRLIA--ALAAGALSNALLIEQLESQNMLPGDATPFEAVKQTQMI 188 D + S E + LA + I QLE N K Q++ Sbjct: 371 DELNCGACGYPSCREKAVAVYHGLAENRMCLPYFIAQLEKSNFHLRQELKAFQGKFGQLV 430 Query: 189 GLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALP 248 G S M ++ + IE VA +D VLI GE+GTGKELVA+AIH S R+ P V +NCAALP Sbjct: 431 GNSAAMQEVYRLIEKVAKTDATVLIRGESGTGKELVARAIHYHSRRSEAPFVSINCAALP 490 Query: 249 ESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDI 308 E++ ESELFGH +GAFTGA++ + G FE A+ GT+FLDEIG++SL LQ+KLLRVLQ G+ Sbjct: 491 ETLLESELFGHARGAFTGAVTAKKGLFEEANEGTIFLDEIGDISLGLQSKLLRVLQEGEF 550 Query: 309 QRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILL 368 RVG+ R RV+VRVLAATNRDL + V G FR +L +RL+V + +PPLRER DD+ LL Sbjct: 551 LRVGETRPTRVNVRVLAATNRDLEKAVKDGAFRPELLYRLNVITIWLPPLRERRDDIPLL 610 Query: 369 AGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVI 428 A +F E+ R G + A + L +PGNVRELE+ I RAV+L + R + Sbjct: 611 ARHFLEKSCQRLGKEVNGFTHEAMDALIRADWPGNVRELENVIERAVILTESKRIELGDL 670 Query: 429 LEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLET 488 + + +EA A++ I QAL ++ A A +L Sbjct: 671 PRQFR------NMAAGASGWAFTRGMSFKEAVAAYESRLILQALEESQGVQARAAEILGL 724 Query: 489 DVANLHRLAKRLGL 502 + L+ + KR L Sbjct: 725 KRSTLNEMIKRYNL 738 >UniRef50_Q1PZ68 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZ68_9BACT Length = 470 Score = 542 bits (1397), Expect = e-152, Method: Composition-based stats. Identities = 141/465 (30%), Positives = 227/465 (48%), Gaps = 7/465 (1%) Query: 38 CDASALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDP 97 +++L D + + + + G F + D +P Sbjct: 7 MHTNSILIVDDEKAARYGMKKILQRDHGSIFEATNGIDVLQKIHTLQPALIFLDINMPQ- 65 Query: 98 YDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGAL 157 DGL ++ ++ + + + ++ M+ +D + Sbjct: 66 LDGLKTLEKIREMKHPPLVVIVTAHGS-EKIAVEAMKKGAYDYIAK---PYEMEELRIIT 121 Query: 158 SNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGET 217 NAL L+ +N +++G S M ++ IE V +D+ VL+ GE+ Sbjct: 122 RNALEKIALQEENTRLRMEIGMLE-GYGELLGQSKIMQEVFDRIEKVVTADVTVLLQGES 180 Query: 218 GTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEM 277 G+GKEL A IH S R P + +NCAA+PE++ ESELFGH +G+FTGA R GKFEM Sbjct: 181 GSGKELAAHEIHRRSKRKNGPFIVMNCAAVPETLIESELFGHERGSFTGATERRMGKFEM 240 Query: 278 ADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLA 337 A+NGT+ LDEIG++SL+ Q+KLLRVLQ +R+G L VDVR+++AT+RDL EE+ Sbjct: 241 ANNGTILLDEIGDMSLSTQSKLLRVLQEQKFERLGGTETLAVDVRIISATHRDLEEEIEE 300 Query: 338 GRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQH 397 GRFR DL++R++V + +PPLR+R +D+ LL F + + + V +S A L Sbjct: 301 GRFREDLYYRINVVNIKIPPLRKRKEDIPLLVNRFIQHFSKKHYKNVVSISNDAMKKLSA 360 Query: 398 YSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLR 457 Y++PGN+R+L++ I A+VL + E + T V ++ + Sbjct: 361 YNWPGNIRQLKNTIESAIVLTNNDVLDISDLSEDI-IREEKTPDSTKNVHYHLSFREAKK 419 Query: 458 EATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 E F+++ I + L + N + A L+ NL + K L L Sbjct: 420 ILIENFEKDFISKKLEECGGNISHTAEALDMHRQNLQQKIKDLQL 464 >UniRef50_P40734 Formate hydrogenlyase transcriptional activator n=63 Tax=Enterobacteriaceae RepID=FHLA_SALTY Length = 692 Score = 542 bits (1397), Expect = e-152, Method: Composition-based stats. Identities = 162/514 (31%), Positives = 260/514 (50%), Gaps = 28/514 (5%) Query: 4 SVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYD--SRQFIPLAIDGLAK 61 + +L I + + + + + DA +++ + + L + Sbjct: 186 NFRILVAITNAVLSRLDIDELVSEVAKEIHHYFNIDAISIVLRSHRKNKLNIYSTHYLDE 245 Query: 62 DVLGRRFALEGHP--RLEAIARAGDVVRFPADSELPD-PYDGLIPGQESLKVHACVGLPL 118 + E + ++ +++ + P PY+ ++ ++ LPL Sbjct: 246 HHPAHEQSEVDEAGTLTERVFKSKEMLLINLNERDPLAPYERMLFDTWGNQIQTLCLLPL 305 Query: 119 FAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNA-------LLIEQLESQNM 171 +G+ ++G L L + F + + LR IA A A+ NA L E+L +N+ Sbjct: 306 MSGKTMLGVLKLAQCEEKVFTTANLKLLRQIAERVAIAVDNALAYQEIHRLKERLVDENL 365 Query: 172 LPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEA 231 + + ++IG S M + K++E+VA SD VLI GETGTGKEL+A+AIH Sbjct: 366 ALTEQLNNVDSEFGEIIGRSEAMYNVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNL 425 Query: 232 SPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGEL 291 S R+ +V +NCAA+P + ES+LFGH +GAFTGA + R G+FE+AD +LFLDE+G++ Sbjct: 426 SGRSGRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDM 485 Query: 292 SLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVF 351 L LQ KLLRVLQ + +R+G ++ ++ DVR++AATNRDL++ V FR DL++RL+VF Sbjct: 486 PLELQPKLLRVLQEQEFERLGSNKLIQTDVRLIAATNRDLKKMVADREFRNDLYYRLNVF 545 Query: 352 PLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAI 411 P+ +PPLRER +D+ LL F + R G + + A L +PGNVRELE+ + Sbjct: 546 PIQLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSSMEWPGNVRELENVV 605 Query: 412 HRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQA 471 RAV+L R + P++T TP+ + V E + + I + Sbjct: 606 ERAVLLTRGNVL---------QLSLPDITAVTPDTSPVATESDKEGED----EYQLIIRV 652 Query: 472 LAQNHHNWA---ACARMLETDVANLHRLAKRLGL 502 L + + A A+ L L KRLG+ Sbjct: 653 LKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 >UniRef50_A6EHC4 Sigma-54-dependent transcriptional regulator n=1 Tax=Pedobacter sp. BAL39 RepID=A6EHC4_9SPHI Length = 550 Score = 542 bits (1397), Expect = e-152, Method: Composition-based stats. Identities = 156/526 (29%), Positives = 249/526 (47%), Gaps = 42/526 (7%) Query: 6 DVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQF---------IPLAI 56 VL +++ + D F+ + L+ + + D + + + Sbjct: 34 AVLLSLSNAIATIRNKYDLFEVIDQKLKTLFDFDEFVICLINEDKKTHSPFLYNQREDFR 93 Query: 57 DGLAKDVLGRRFALEGHPRLEAIARAGDVVR--FPADSELPDPYDGLIPGQESLKVHACV 114 + + EA+ + + + PDP + ++ + + Sbjct: 94 NAAGIPPASTKRYSLDDGLCEAMLASAHPIVFEVEEVMQWPDPP-IWLGFWQNKGIREMI 152 Query: 115 GLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALL------------ 162 G+ +F G L + + L I+ + A+SN Sbjct: 153 GMKIFDRDECSGFFYLYAKKSNAVSNQYYSLLHSISLQISVAVSNIRANEKIEEQLQQIN 212 Query: 163 --IEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTG 220 +QLE + + ++M+G S + Q+ IE VAASD VLI GETGTG Sbjct: 213 TYKQQLEDEKSYLQEQINT-RYHHSEMVGQSSAIRQVFDLIEQVAASDSTVLILGETGTG 271 Query: 221 KELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADN 280 KELVA++IH SPR ++ +NCAALP ++ ESELFGH KG+FTGA R GKFE+A N Sbjct: 272 KELVARSIHNLSPRKDKLMIKVNCAALPANLVESELFGHEKGSFTGASERRIGKFELAHN 331 Query: 281 GTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRF 340 GTLFLDEIGELS +Q KLLR LQ +I+R+G ++ +VR++AATNR+L +EV G F Sbjct: 332 GTLFLDEIGELSPDIQVKLLRALQEKEIERIGGKGVIKTNVRIIAATNRNLMKEVEEGNF 391 Query: 341 RADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSF 400 R+DL++RL+VFP+++PPLR R +D+ L+ +F + + G ++ G LQ Y + Sbjct: 392 RSDLYYRLNVFPITIPPLRNRKEDIQALSAHFIQHLAKKTGRQVKGMTKGVLKTLQEYPW 451 Query: 401 PGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREAT 460 PGN+RELEH I R+++L+R + + + +H + K+ + Sbjct: 452 PGNIRELEHLIERSILLSRGNIINEVHLPKVEHM------------EDLTSNKEIRIKTI 499 Query: 461 EAFQRETIRQALAQNHHNWA---ACARMLETDVANLHRLAKRLGLK 503 +R+ I L + A +L L+ K+ +K Sbjct: 500 FENERDHILNILKLCKGKISGNGGAAELLSIPATTLNSKIKKFNIK 545 >UniRef50_Q1D5E1 Sigma-54 dependent transcriptional regulator, Fis family n=4 Tax=Myxococcales RepID=Q1D5E1_MYXXD Length = 529 Score = 542 bits (1397), Expect = e-152, Method: Composition-based stats. Identities = 164/505 (32%), Positives = 240/505 (47%), Gaps = 12/505 (2%) Query: 6 DVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLAKDVLG 65 VL + R + Q L+ + L+ D L D + + +V Sbjct: 29 QVLLPFGGLVGREVDLDAFLQTLMDRIAITLQADRGTLWLLDPARRELFSRAAHLPEVSQ 88 Query: 66 RRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFAGQNLI 125 R L G +A+AG + P + I + + + +PL G + Sbjct: 89 IRVKL-GQGVAGTVAKAGHAINVPDPRGEQRFF-ADIDRMTGYRTTSLLAVPLRDGDGAL 146 Query: 126 -GALTLDGMQ-PDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVK 183 G L + + D+F + L IA+ + AL + L ++L+ P Sbjct: 147 YGVLQVLNRRGEDRFTDEDTQRLTAIASQVSTALQSTSLYQELQRAKEQPQVPV---GYF 203 Query: 184 QTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLN 243 ++IG SP + + + + A +D VL+ GE+G+GKEL A+A+H PR P + ++ Sbjct: 204 FNRIIGESPQLQAIYRLVRKAAPTDATVLLRGESGSGKELFARAVHVNGPRRDQPFIKVD 263 Query: 244 CAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVL 303 CAALP ++ E+ELFGH +GAFTGA GKFE A GT+F+DEIGEL L +Q KLLRV+ Sbjct: 264 CAALPATLIENELFGHERGAFTGADHRVPGKFEAASGGTVFIDEIGELPLPVQGKLLRVI 323 Query: 304 QYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERG- 362 Q + +RVG + ++VDVR++AAT+RDL V GRFR DL++R+ V + +PPLRERG Sbjct: 324 QDREFERVGGTQAVKVDVRIVAATHRDLARMVAEGRFREDLYYRIKVVEVVLPPLRERGA 383 Query: 363 DDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATR 422 +D+ LA +F R L+ LSA A L+ Y +PGNVRELE+ I AVVL Sbjct: 384 EDIERLARHFVAAVARRHRLTPPRLSAAAVERLKRYRWPGNVRELENCIESAVVLCEGE- 442 Query: 423 SGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLRE---ATEAFQRETIRQALAQNHHNW 479 +E + + P L +R I + L N Sbjct: 443 ILEEHLPLPDVDRAALPPPAAAQGVNAPTAPAPLDAGLLPLAEVERRHILRVLDAVKGNR 502 Query: 480 AACARMLETDVANLHRLAKRLGLKD 504 A AR+L L R K GL D Sbjct: 503 TAAARVLAIGRNTLARKLKEYGLGD 527 >UniRef50_C1SGB7 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SGB7_9BACT Length = 473 Score = 541 bits (1396), Expect = e-152, Method: Composition-based stats. Identities = 150/479 (31%), Positives = 226/479 (47%), Gaps = 32/479 (6%) Query: 42 ALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGL 101 L+ D ++ + + + A +G E ++ +D +P+ DG+ Sbjct: 8 ILIVDDDDNMREAMLETVRRMGVSVEIATDGQEGFEKASKNA-YDLIVSDMRMPN-VDGM 65 Query: 102 IPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNAL 161 L + +D ++ +D + Sbjct: 66 TMMNMIQSAGITTPLCFVTAFGTV-NNAVDALKLGAYDYILKPFAPEV------------ 112 Query: 162 LIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGK 221 IE+L + + + P K+ I S M QL VAAS+ VLI+GE+GTGK Sbjct: 113 -IEELVRRVLEIEETAPAVKRKKNTAIFRSAFMAQLFSLARDVAASEATVLITGESGTGK 171 Query: 222 ELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNG 281 E+ A+ IHE S R+ V +NCAALPE++ ESELFG+ KGAFTGA++ + GKFE+AD G Sbjct: 172 EVFARYIHENSNRSSGAFVAVNCAALPENLMESELFGYEKGAFTGAVNRKPGKFELADGG 231 Query: 282 TLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFR 341 T+ LDE+GE+ L LQAKLLRVLQ +++R+G + +++VR+LA TN+ L++EV G FR Sbjct: 232 TILLDELGEIPLHLQAKLLRVLQEKEVERLGGTKPFKINVRILATTNKVLKKEVDEGNFR 291 Query: 342 ADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFP 401 DL++RL+V + +PPLRER +D++ LA +F E+ G ++ A L Y +P Sbjct: 292 EDLYYRLNVISIELPPLRERKEDIMELATFFAEKYAQINGKGSCKMTDDAVKALLDYDWP 351 Query: 402 GNVRELEHAIHRAVVLARATRSGDEVIL-----------EAQHFAFPEVTLPTPEVAAVP 450 GNVRELEH I RAVVL R + + + Q A + Sbjct: 352 GNVRELEHTIERAVVLCRDGVISERNLFLHGITINQFMTDKQELAAADSYTGCETTEDSV 411 Query: 451 VVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRL-----GLKD 504 + +RE I + L + N A ML V L ++D Sbjct: 412 SAGIDFAGTIAEMERELIIKTLKETGGNRTKAADMLGITVRTLRNKLNEYKENGLNIED 470 >UniRef50_C9RIK1 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RIK1_FIBSS Length = 509 Score = 541 bits (1395), Expect = e-152, Method: Composition-based stats. Identities = 168/507 (33%), Positives = 262/507 (51%), Gaps = 22/507 (4%) Query: 4 SVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSR--QFIPLAIDGLAK 61 +++L I+ L + + + ++ T+ V+ + + L Y+ + +GL+ Sbjct: 10 ELELLYKISSILNQSLDFETVAHPVLQTVESVMGVEHATLTLYNRHTGEISIEIAEGLSS 69 Query: 62 DVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFAG 121 + G + G + P+ ++ PD D G+ K A + +P+ Sbjct: 70 RQASKGRYKVGEGITGRVVETGKPIIIPSVAKDPDFLDRTGRGKTEDK--AFLCVPIIME 127 Query: 122 QNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPF-- 179 Q ++GAL+ D PD+ ++ ++++ L+ +A + L Q +N + Sbjct: 128 QEVVGALSADEHNPDEANL--NDQIHLLEIIAQMLATAVKLRRQAREENEILKAENERMA 185 Query: 180 ----EAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRA 235 + +IG +P M Q+ +I+ VA S L LI GE GTGK LVA+AIH S R Sbjct: 186 MELKARFQPDNIIGKTPEMQQVYTQIDQVAKSPLPALIVGEVGTGKGLVAEAIHFRSDRN 245 Query: 236 VNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLAL 295 + P V ++CAALPESV + ELFG KGA G ++ G+ E A+ GTLFLDE+ EL+ L Sbjct: 246 LGPFVRVHCAALPESVLDRELFGSEKGALVGVVNEAPGRVEQAEGGTLFLDEVAELTPNL 305 Query: 296 QAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSV 355 Q KLLR+LQ G+++RVG +V+VRV+ AT ++L++ V G FR DL+++L + P+ V Sbjct: 306 QIKLLRLLQQGEMERVGARFPKKVNVRVICATTKNLQQMVSDGTFREDLYYQLHIVPIYV 365 Query: 356 PPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAV 415 PPLR+R D++LLA YF + G + L+ G +L Y +PGNVRELE+AI RAV Sbjct: 366 PPLRKRRTDIVLLADYFVDHYCRLVGKNVRRLARGTIEMLMSYPWPGNVRELENAIERAV 425 Query: 416 VLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQN 475 +L T+ T E + PV NL+ EA++R+ I AL + Sbjct: 426 LLTEEDVIYPHHFPP---------TIQTDETSGTPV-SGNLKLMVEAYERDIICDALKSS 475 Query: 476 HHNWAACARMLETDVANLHRLAKRLGL 502 AA AR L T L K+LG+ Sbjct: 476 KGKMAAAARSLSTTPRILTYKIKQLGI 502 >UniRef50_C8WE21 Transcriptional regulator, NifA, Fis Family n=4 Tax=Alphaproteobacteria RepID=C8WE21_ZYMMN Length = 568 Score = 541 bits (1395), Expect = e-152, Method: Composition-based stats. Identities = 172/543 (31%), Positives = 260/543 (47%), Gaps = 46/543 (8%) Query: 4 SVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLAKDV 63 ++ L I+ L + +R+I+ L ++ D + + +D Q + + G D Sbjct: 23 ALFGLYEISKILCAPMETVTLIKRVISVLESFIDLDHAIIAFFDEDQEAEILV-GAKSDQ 81 Query: 64 LGRRFALEG--HPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFAG 121 G + + + I V S+ P + + +G+P+ Sbjct: 82 QGAKIYFDSIPEQIVGQIVTGKMPVIIRDISKDPYFSNSRSHIWHINQKSCVIGVPILDR 141 Query: 122 QNLIGALTLDGM--QPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDAT-- 177 + G L +D + ++ + D + RL++ +AA A L + + ++ + Sbjct: 142 DKVSGILLIDRPTPRNEREALAPDRDARLLSMVAALLGQTARLHQMIRREHEFLLRQSSH 201 Query: 178 ----PFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASP 233 E + ++IG SP + + ++I ++A +++ VL+ GE+GTGKEL A+AIH+ASP Sbjct: 202 TAPQQAEDMPHPRIIGDSPIIRSILEKINLIAKNNVTVLLRGESGTGKELFAQAIHQASP 261 Query: 234 RAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSL 293 R P + LNCAALPESV ESELFGH KGAFTGA R G+FE+AD GTLFLDEIGE+S Sbjct: 262 RKGLPFIKLNCAALPESVLESELFGHEKGAFTGAAQMRKGRFELADGGTLFLDEIGEISP 321 Query: 294 ALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPL 353 QAKLLRVLQ G+ +RVG + L+V+VRV+AATN +L E V G FRADL++RLSV P+ Sbjct: 322 NFQAKLLRVLQEGEFERVGGTKTLKVNVRVIAATNVNLEEAVSRGNFRADLYYRLSVIPI 381 Query: 354 SVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHR 413 +PPLRE D+ LLA F L + + + A ++L H FPGN+RELE+ I R Sbjct: 382 FLPPLREHPSDIPLLAKEFLRHFNLE-NKTHLTIDQNALDVLSHCYFPGNIRELENCIRR 440 Query: 414 AVVLARATRSGDEVI--------------------------------LEAQHFAFPEVTL 441 LAR T E + A Sbjct: 441 TATLARNTEITAEDFTCYNDNCLSSIFWHREEEKTPHVCKNHGSEGEISECPSAQHCQAA 500 Query: 442 PTPEVAAVPVVKQNLREATEAF--QRETIRQALAQNHHNWAACARMLETDVANLHRLAKR 499 E + + F Q+E + A+ Q A AR+L + ++ Sbjct: 501 SNAESDKTDLAFPKEKTTQSEFRSQKEQLIDAMEQAGWVQAKAARILGMTPRQIGYALRK 560 Query: 500 LGL 502 G+ Sbjct: 561 NGI 563 >UniRef50_A4CKT3 Transcriptional regulator, NifA subfamily, Fis Family protein n=1 Tax=Robiginitalea biformata HTCC2501 RepID=A4CKT3_9FLAO Length = 791 Score = 541 bits (1394), Expect = e-152, Method: Composition-based stats. Identities = 160/517 (30%), Positives = 255/517 (49%), Gaps = 48/517 (9%) Query: 20 GHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLA----IDGLAKDVLGRRFALEGHPR 75 Q+ F+R+ Q LE + ++ ++ + L I+ + G R P Sbjct: 287 DLQETFRRITKLAAQTLELERVSIWKFTNSGNEILCEALYIENEGQHRRGDRLTRADCPN 346 Query: 76 LEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQP 135 + V P E P D + + + + + +++ G L + + P Sbjct: 347 YFKLLEQQKSVLVPNAQEDPATADFGPGYLKPNGIKSLMDVFVYSAHQPYGILCFEHVGP 406 Query: 136 D--QFDVFSDEELRLIAALAAGALSNAL------------------------LIEQLESQ 169 + E +A + + + + L +LE + Sbjct: 407 GIRSWTAEDLEFASSMANVVSLMVESNERKKAEEQIRQANLELSKANKELDTLRNRLEQE 466 Query: 170 NMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIH 229 NM + A +M+ S ++Q+ E+E VAA++ VL+ GE+GTGKEL+A+AIH Sbjct: 467 NMYLRNELDL-AFNYQEMVYSSQAISQVLTEVEQVAATNATVLLQGESGTGKELLARAIH 525 Query: 230 EASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIG 289 SPR+ P++ +NCAA+P + ESELFGH KGAFTGA+SN+ GKFE+AD GTLFLDEIG Sbjct: 526 NISPRSGKPMIKVNCAAIPGELLESELFGHKKGAFTGAVSNKVGKFELADGGTLFLDEIG 585 Query: 290 ELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLS 349 EL L +Q KLLR LQ G+I+ VG ++DVR++AATNR L+EEV G FR DL+ R++ Sbjct: 586 ELPLEMQPKLLRFLQEGEIEVVGGTEVRKLDVRIIAATNRYLKEEVEKGDFREDLYFRIN 645 Query: 350 VFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEH 409 VFP+ VPPLRER +D+ +L +F ++ + G + ++ A + L+ Y +PGN+RELE+ Sbjct: 646 VFPIEVPPLRERKEDIPILVEHFMDKFNRKYGKNISFVTEEAMSQLKQYEWPGNIRELEN 705 Query: 410 AIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIR 469 + RA +++R + + +P+ NL + QR I Sbjct: 706 LLERATIVSRGETLIIPGF------------ESQSQKSKMPLRNNNL--SLTTVQRNHIL 751 Query: 470 QALAQNHHNWA---ACARMLETDVANLHRLAKRLGLK 503 L A +L+ + L ++LG++ Sbjct: 752 HVLDMCDWKITGQGGAAELLDMRPSTLRDRMQKLGIE 788 >UniRef50_B5JH96 Sigma-54 interaction domain family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JH96_9BACT Length = 515 Score = 540 bits (1393), Expect = e-152, Method: Composition-based stats. Identities = 146/511 (28%), Positives = 230/511 (45%), Gaps = 58/511 (11%) Query: 41 SALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDG 100 + L+ D + L A G +E I D + G Sbjct: 9 TILIVDDDEEIRYSLGRVLGSRGYQIETAASGEEGIEKIKGGLKPDLIMCDVRM-GGISG 67 Query: 101 LIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVF-SDEELRLIAALAAGALSN 159 + Q + + + L ++ M+ +D ++ + +A A+S+ Sbjct: 68 IETLQHMRSASSSLQIVLMTAFGTAQT-AIEAMKFGAYDYIMKPFDVDKVIEIAEKAISS 126 Query: 160 ALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGT 219 + + L+S N + ++G SP M ++ K I VAASD VL++GE+GT Sbjct: 127 S---QDLKSANRYEKKVNYDDYK--EGIVGNSPAMQEVFKVIGQVAASDATVLVTGESGT 181 Query: 220 GKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMAD 279 GKEL+AK I++ S R+ P V +NCAA+P+++ ESELFGH KG+FTGA + R G+FE D Sbjct: 182 GKELIAKCIYQHSLRSGGPFVAVNCAAIPDNLIESELFGHEKGSFTGATTQRIGRFEQCD 241 Query: 280 NGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGR 339 GT+FLDEIG+++LA Q K+LRVLQ G+IQRVG ++VDVRV+AATN+DL + V Sbjct: 242 RGTIFLDEIGDMALATQTKILRVLQEGEIQRVGGTETIKVDVRVIAATNKDLEKMVEDKE 301 Query: 340 FRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYS 399 FR DL++RL+VF + VP L+ER +DV + + + + +S A N L Y Sbjct: 302 FREDLYYRLNVFRIRVPSLKERKEDVPDIVDFMLQNLVKEKKARVTRVSPDALNALVAYG 361 Query: 400 FPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPE------------------VTL 441 +PGNVREL + ++R+ V+A+ + + + E Sbjct: 362 WPGNVRELGNVVYRSAVVAQGDAILMKDLPDTIRGGRGEAPAAPVVSAASSQTSVAAPVE 421 Query: 442 PTPEVAAVPVVKQNLREATEA--------------------------------FQRETIR 469 P A ++ + +R+ I Sbjct: 422 PQASAAETDSKEEPVEAPLATSIPEPMPISLPAIYDKLYHELRERQEMRILTLIERQMIE 481 Query: 470 QALAQNHHNWAACARMLETDVANLHRLAKRL 500 +A+ + N A A +L L + Sbjct: 482 RAIGETGGNQARAAEILGITRNTLKKRLDEY 512 >UniRef50_B8FLD5 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FLD5_DESAA Length = 1035 Score = 540 bits (1393), Expect = e-152, Method: Composition-based stats. Identities = 155/514 (30%), Positives = 256/514 (49%), Gaps = 37/514 (7%) Query: 5 VDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDS-----RQFIPLAIDGL 59 + + + EL + + + QR+I+T +V + A+ + + A L Sbjct: 541 LREILELGQELVKIRDYHELVQRIISTGNRVTGAERGAIFMSEKGNSGKEELRLKASRNL 600 Query: 60 AKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLF 119 D + + +E +A +G + +S + Y + + + +PL Sbjct: 601 TSDHVANPSFVSSMKMIEMVAASGRGLIAGVESTDTEGYS------SEGAIQSKICVPLC 654 Query: 120 AGQNLIGALTLD-GMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPG---- 174 ++G L D + F + L +ALAA AL NA +Q+ N+ Sbjct: 655 LHDQVVGVLYHDNRLLASAFREEDLDVLSYFSALAAIALDNARAYDQIRRWNIKLSREKQ 714 Query: 175 --DATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEAS 232 + ++ +++G SP + ++ +IE VA ++ VLI+GETG GKELVA+AI + S Sbjct: 715 YYEEAHLSYLQFDEIVGHSPAINEVLSKIEQVANTETTVLITGETGVGKELVARAIQKHS 774 Query: 233 PRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELS 292 RA P + + +ALP+ + SEL GH KGAFTGA ++G+ E+AD GTLFLDEIG++S Sbjct: 775 SRAQQPFIGVQLSALPKDLMASELLGHEKGAFTGATHRQAGRLELADGGTLFLDEIGDIS 834 Query: 293 LALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFP 352 +Q +LLRVLQ +RVG + L D R++AATNR+L V GRFRADL++RL+VFP Sbjct: 835 HDIQIRLLRVLQTRQFERVGGMKTLSSDFRLIAATNRELESLVRDGRFRADLYYRLNVFP 894 Query: 353 LSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIH 412 + VPPLR+R +D+ LLA +F + + + +S ++L+ Y +PGNVREL++ + Sbjct: 895 IYVPPLRDRREDIPLLAMHFLKLHAAKLNKQVMRISDREMDMLKEYDWPGNVRELKNVVE 954 Query: 413 RAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQAL 472 R V+L+ + +P + P + +R I + L Sbjct: 955 RGVILSTN----------------RDFRMPELQSGDCPPLTVGDTATLAENERSHILRIL 998 Query: 473 AQNHHNW---AACARMLETDVANLHRLAKRLGLK 503 + + A++L+ + L +LG+K Sbjct: 999 KRTGWKVAGASGAAKILDIPPSTLSFRMNKLGIK 1032 >UniRef50_D2L943 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L943_9DELT Length = 482 Score = 540 bits (1393), Expect = e-152, Method: Composition-based stats. Identities = 147/475 (30%), Positives = 226/475 (47%), Gaps = 19/475 (4%) Query: 40 ASALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYD 99 A L+ D Q LA + R A G + A+ R D +P Sbjct: 6 AQILIVDDDHQLRQSFERLLAAEGYAVRTASSGEAGILAV-REAVPDLVVMDVRMP-GIS 63 Query: 100 GLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDV-FSDEELRLIAALAAGALS 158 GL + + + + + ++ + +D ++ I L A++ Sbjct: 64 GLEAYAAMREFEPRLPVIIMTAFGTTD-IAIEATKMGAYDYILKPFDIPEILKLIEKAVA 122 Query: 159 NALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETG 218 + + + AV +IG S M L K I A +D VLI GE+G Sbjct: 123 AGRSMR-----SRVAVGEEGEAAVAADAIIGRSQAMQDLYKAIGRAAPTDATVLIRGESG 177 Query: 219 TGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMA 278 TGKELVA+A+++ S RA P + +NC A+PE++ ESELFG+ KGAFTGA + GK E A Sbjct: 178 TGKELVARAVYQHSLRADKPFLVINCVAIPETLLESELFGYEKGAFTGATGRKVGKIEQA 237 Query: 279 DNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAG 338 + GT+FLDEIG++ L++QAK+LR+LQ +++R+G + + VDVR++AATNRDL V AG Sbjct: 238 NRGTVFLDEIGDMPLSIQAKILRLLQEQNVERLGGRQVIPVDVRIIAATNRDLEAAVRAG 297 Query: 339 RFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHY 398 +FR DL++RL V +++PPLRER D+ LL YF + G +S A LL Sbjct: 298 QFREDLYYRLKVVTMAMPPLRERPGDIPLLVRYFLARYSREMGQPDPGVSDEAMALLTTQ 357 Query: 399 SFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAA---------- 448 +PGNVREL + + +A++ G + + +A + Sbjct: 358 PWPGNVRELGNTVKKALIFNLGAPLGPDEVQKASGEPLRGGGPAEADPGDSLARYVRREL 417 Query: 449 VPVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 + + + F IR+AL N + AR+L L ++ GL+ Sbjct: 418 ASGRESLFEDLMDRFGLLVIREALEATGGNRSQAARLLGLSRPTLLAKIEKYGLR 472 >UniRef50_A9F1Z6 Nitrogen regulation protein NR(I) n=5 Tax=Myxococcales RepID=A9F1Z6_SORC5 Length = 493 Score = 540 bits (1392), Expect = e-152, Method: Composition-based stats. Identities = 158/476 (33%), Positives = 226/476 (47%), Gaps = 10/476 (2%) Query: 29 ITTLRQVLECDASALLRYDSR-QFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVV- 86 + ++ + +A+ +L D + + A +EAI + Sbjct: 1 MASIPPSIPQNATRVLVVDDEPGLRQVLHIAFHRQGYEVVVAPGARAAIEAIRQNPQPFP 60 Query: 87 RFPADSELPDPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEEL 146 D +PD G+ + + + + + + LD M+ +D + Sbjct: 61 LVLTDLVMPDG-SGIEVLTAAKARSNATEVIVMTAHSTVES-ALDAMRHGAYDFVTK--- 115 Query: 147 RLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAA 206 A + AL + ++N + + +G S M ++ + I +A Sbjct: 116 PFSPAELTALAAKALEKSSIVAENQRLRAQLERLDLPSREPLGTSAAMQRIAELIAKIAP 175 Query: 207 SDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTG 266 + VL++GE+GTGKE VA+AIH+ S RA P + +NC ALPE++ ESELFGH KG+FTG Sbjct: 176 TRTTVLLTGESGTGKERVARAIHDQSDRAARPFLVVNCGALPEALMESELFGHEKGSFTG 235 Query: 267 AISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAA 326 A + G F AD GTL LDEIGEL ALQ KLLRVLQ ++ VG + VDVRVLAA Sbjct: 236 AGARSMGLFREADGGTLLLDEIGELPAALQVKLLRVLQERKVRPVGAAAEIAVDVRVLAA 295 Query: 327 TNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVV 386 TNRD+ EV GRFR DL++RL+V + +PPLRER D+ LA F + G Sbjct: 296 TNRDVEAEVRQGRFRQDLYYRLNVIRIELPPLRERPGDISRLAERFLRRFAAELGKDVRG 355 Query: 387 LSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEV 446 L+ A L YSFPGNVRELE+ + RAV LA G + A P P + Sbjct: 356 LTTDAVRALDAYSFPGNVRELENMMERAVALAGGPTIGLGDLPSAV---AGLSASPAPLL 412 Query: 447 AAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 A +P L E +R I QAL + A A++L +L + L Sbjct: 413 AQLPPEGCALDEVIGEVERRLILQALERTGGVRKAAAKLLGVSFRSLRYRLAKHAL 468 >UniRef50_C0QRG3 Transcriptional regulatory protein ZraR n=2 Tax=Aquificales RepID=C0QRG3_PERMH Length = 442 Score = 540 bits (1392), Expect = e-152, Method: Composition-based stats. Identities = 146/466 (31%), Positives = 226/466 (48%), Gaps = 25/466 (5%) Query: 38 CDASALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDP 97 L+ D R + L L L I + D +P+ Sbjct: 1 MVKRILIVDDDRDILNLMKLKLKNYGYTIFTESSPVEALNRI-KDEHFDLILVDQLMPE- 58 Query: 98 YDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGAL 157 GL + + L + + M+ F + + + Sbjct: 59 LSGLEFIDRLKERDIKTPVILMTAYGSLED-AVLAMKKGAFHYITK---PINFEELKIII 114 Query: 158 SNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGET 217 AL + L+ + +I SP M Q+ + + +A D VLI+GE+ Sbjct: 115 DQALEVSDLKKELNELKSLLST------DIIAESPQMKQVLETAKKIAPFDTTVLITGES 168 Query: 218 GTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEM 277 GTGKE++A IH+ S R P + +NC A+P + ESELFG+ KGAFTGA +++ G E Sbjct: 169 GTGKEMIANFIHKNSLRKERPFIAINCGAIPSELLESELFGYKKGAFTGANTDKKGLIEE 228 Query: 278 ADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLA 337 A+ GTLFLDEIGEL L LQ KLLRVLQ +I+ +G +R ++DVR +AATNRDL++ V Sbjct: 229 AEGGTLFLDEIGELPLDLQVKLLRVLQENEIKPIGSNRPKKIDVRFIAATNRDLKKMVEE 288 Query: 338 GRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQH 397 G+FR DL++R++V P+ +PPLRER +D+I LA YF + R G+ + LS AR L + Sbjct: 289 GKFREDLYYRINVIPIHIPPLRERKEDIIPLAQYFINKFCSRYGIPKKRLSEKAREKLLN 348 Query: 398 YSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLR 457 Y + GNVRELE+ I RAV+ D + ++ + + P + Sbjct: 349 YDYKGNVRELENIIERAVLTTEGEEITDIPVTVSKRYILSQELKP-------------FK 395 Query: 458 EATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 EA + F+ ++ L + N + +++ A ++R+ KR G++ Sbjct: 396 EAKKEFEESYLKNLLEKTDFNISKASKIAGITRAQIYRMIKRYGIE 441 >UniRef50_B5YK20 Response regulator HsfA n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YK20_THEYD Length = 448 Score = 540 bits (1392), Expect = e-152, Method: Composition-based stats. Identities = 144/462 (31%), Positives = 228/462 (49%), Gaps = 17/462 (3%) Query: 43 LLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLI 102 +L D + ++ + K + + + D ++ + DG Sbjct: 4 VLVIDDEKITLKNLEHVLKKEGYDVTGTDSGVEALKLIEKQEFDIVLTDIKM-EKVDGFE 62 Query: 103 PGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALL 162 ++ ++ + + G + + M+ F + + + A Sbjct: 63 ILRKCKALYPDTEVIMITGYATVEN-AVTAMKQGAFYYIAK---PFKLDIIRKIILEASE 118 Query: 163 IEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKE 222 +L+ + F +I + M +L + +A +D NVLI+GE+GTGKE Sbjct: 119 KVKLKKEVKQLRQQLDFHEK--VNIITQNSKMLKLLEIARQIAPTDCNVLITGESGTGKE 176 Query: 223 LVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGT 282 L A+ IH S R P + +NC A E + +ELFGH KGAFTGA + + G EMA +G+ Sbjct: 177 LFARYIHLNSLRKKGPFLAVNCGAFSEELLSNELFGHEKGAFTGANALKKGLIEMASSGS 236 Query: 283 LFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRA 342 LFLDEI E+SL +QAKLLRV+Q + R+G ++VDVR +AATNRD++EEV G+FR Sbjct: 237 LFLDEITEMSLTMQAKLLRVIQEREFFRLGATEPIKVDVRFIAATNRDIKEEVKNGKFRE 296 Query: 343 DLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPG 402 DL++RL+V + +PPLRER DD+ LL YF ++ L +S A NLL +Y +PG Sbjct: 297 DLYYRLNVVNIEIPPLRERKDDIPLLVAYFSKKYSLLMKKEITGVSEEAINLLVNYEYPG 356 Query: 403 NVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEA 462 NVRELE+ I RAVVL +++ E + + V K+ + E Sbjct: 357 NVRELENIIERAVVLCNSSQIDVEHLPQDL----------KELKIEVFTKKEGKFMSLEE 406 Query: 463 FQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLKD 504 ++E I+ L + +N A++L D +L R K G+++ Sbjct: 407 LEKEYIKWILREVGNNKTVAAQILGIDRVSLWRKLKNYGIEN 448 >UniRef50_Q1PWJ3 Strongly similar to sigma 54 response regulator protein ntrC n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PWJ3_9BACT Length = 463 Score = 540 bits (1391), Expect = e-152, Method: Composition-based stats. Identities = 148/462 (32%), Positives = 227/462 (49%), Gaps = 9/462 (1%) Query: 42 ALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGL 101 L+ D + + + L + + A G L + + D +LP DGL Sbjct: 6 ILVVDDEEGYRKVLYNALTERGFQVKTAASGEEALAEFKKNSFSLIVI-DMKLPGSIDGL 64 Query: 102 IPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNAL 161 Q + +++ + + I ++ M+ F+ + + + Sbjct: 65 ELLQRAKEMNNA-SILIMTAYGGIDT-AVEAMRRGAFNYITK---PFSIDEIMLNIERMI 119 Query: 162 LIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGK 221 ++ +N +A + +IG S + ++ I VA S VLI+GE+GTGK Sbjct: 120 EQNKIIEENNYLHSELE-KAFGRKTIIGNSKEIQKVMDMISRVAFSSATVLITGESGTGK 178 Query: 222 ELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNG 281 ELVA+AIH R V +NCA L E + ESELFGHV+GAFTGAI ++ G FE AD G Sbjct: 179 ELVARAIHFNGNRKHKKFVVINCATLSEHLLESELFGHVRGAFTGAIKDKKGLFEEADGG 238 Query: 282 TLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFR 341 TLF+DEIG++ +QAK+LRVLQ G+ +GD VDVR++AATN+ L ++V FR Sbjct: 239 TLFMDEIGDIPTPVQAKILRVLQEGEFIPLGDTVARNVDVRIIAATNQHLLKKVRDKEFR 298 Query: 342 ADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFP 401 DL++RL+V + +PPLRER +D+ LL +F E+ ++ LS L Y +P Sbjct: 299 EDLYYRLNVINIKMPPLRERKEDIPLLIKHFIEKYNKKENKQIKGLSPETEMELYKYHWP 358 Query: 402 GNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATE 461 GNVRELE+AI RAV L VIL L ++ K+ ++A + Sbjct: 359 GNVRELENAIERAVTLTNEPIIPLHVILPIVRKEDGNNMLLDDLLSHP--YKEARKKALD 416 Query: 462 AFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 F + + + +N N AR + + L R+ K+ +K Sbjct: 417 VFNTKYVMNIINKNSGNVTNAARECKIERQYLQRMLKKYAIK 458 >UniRef50_A8ZYR3 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Deltaproteobacteria RepID=A8ZYR3_DESOH Length = 485 Score = 539 bits (1390), Expect = e-152, Method: Composition-based stats. Identities = 153/476 (32%), Positives = 234/476 (49%), Gaps = 23/476 (4%) Query: 41 SALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDG 100 S L+ D Q L ++ A G LEA+ R D ++P G Sbjct: 3 SILIVDDDDQLRQSFAKLLKEEGYSVDMAPSGEAGLEAV-RDKAFDLVVLDVQMP-GMSG 60 Query: 101 LIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDV-FSDEELRLIAALAAGALSN 159 L ++ A + + + ++ + FD ++ + L AL Sbjct: 61 LEAFARIREIDATLPVVVMTAYGTTET-AIEATKLGAFDYILKPFDIAGVLDLITQALEA 119 Query: 160 ALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGT 219 ++ N ++ + +IG SP M ++ K I VA +D VLI GE+GT Sbjct: 120 GHMMRARVEMN------VAPDSARPGAIIGSSPPMQEVYKAIGRVAQTDATVLIRGESGT 173 Query: 220 GKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMAD 279 GKELVA+AI++ S RA P + +NC ALPE++ ESELFG+ KGAFTGA S R GK E A+ Sbjct: 174 GKELVARAIYQHSKRAGKPFLVINCVALPETLLESELFGYEKGAFTGAASRRIGKIEQAN 233 Query: 280 NGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGR 339 GT+FLDEIG++ L++QAK+LR+LQ ++ +G + + VDVR+LAATNR+L + + Sbjct: 234 GGTVFLDEIGDMPLSIQAKILRLLQERSLEPLGGNASIDVDVRILAATNRNLEKAIENEV 293 Query: 340 FRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYS 399 FR DL++RL V +++PPLR+R +DV LLA YF + L+ AR +++H+ Sbjct: 294 FREDLYYRLKVVTVNLPPLRDRVNDVNLLADYFMTLFSKEMKMDNPGLTDEARKMIRHHP 353 Query: 400 FPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREA 459 +PGNVREL +A+ ++++ +R E I + T VV + RE Sbjct: 354 WPGNVRELANALKKSLIFSRGYPVRPEDISQVIAGPDQAGPSVTDGSDMDRVVGEWAREM 413 Query: 460 T-------------EAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 + IR+AL N + A++L L +L L Sbjct: 414 LTAGGDTARFDYLTDRLTAIIIREALQMTRGNRSQAAKLLGLARPTLLSKIDKLNL 469 >UniRef50_A1AUC3 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Desulfuromonadales RepID=A1AUC3_PELPD Length = 465 Score = 539 bits (1390), Expect = e-152, Method: Composition-based stats. Identities = 144/463 (31%), Positives = 230/463 (49%), Gaps = 13/463 (2%) Query: 41 SALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDG 100 ++L D + + + + + G + D ++ G Sbjct: 8 GSILIVDDERGQRDILKLILRKEGYDIVDVPGVGEALEQLDRREFDLILTDLKM-QGQSG 66 Query: 101 LIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNA 160 L + L + L + + ++ M+ FD E L L A Sbjct: 67 LDLLERVLSDDPQQCVILMTAHGSVDS-AVEAMRMGAFDYL---EKPLERDNLVLTLQRA 122 Query: 161 LLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTG 220 L +N + M+G P M ++ + + +AA+ VLI GE+GTG Sbjct: 123 FERIGLVRENRVLQKRV-ASTTPIPSMLGDHPRMAEVFRVVAKIAATTSTVLIVGESGTG 181 Query: 221 KELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADN 280 KELVA+AIHE S R NP + +NCAA+PE++ ESELFGH KG+FTGA + G FE A+ Sbjct: 182 KELVARAIHEGSQRRDNPFMAINCAAIPETLIESELFGHEKGSFTGAHARELGVFEAANG 241 Query: 281 GTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRF 340 GT+FLDEIGE+++++QAKLLR +Q +++RVG + +DVR+++ATN++L +E+ G F Sbjct: 242 GTVFLDEIGEMNVSMQAKLLRAIQEKEVRRVGGRVNIPLDVRIISATNKELEQEIRRGSF 301 Query: 341 RADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSF 400 R DL++RL+V +++PPLRERG DV LA +F ++ L G+ +S A LL +YS+ Sbjct: 302 REDLYYRLNVIRINLPPLRERGSDVKTLAEFFVKKYSLATGIDVEGISRPALKLLMNYSW 361 Query: 401 PGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREAT 460 PGNVR+LE I RAV++A ++ + E+T + VP Sbjct: 362 PGNVRQLESVIERAVLMAESSVIEPGDLP-------AEITSTSLLAGVVPFDLPPEGIDM 414 Query: 461 EAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 E ++ I +A+ + A +L L ++ ++ Sbjct: 415 ETLEKNLIIKAMERADWVIGKAAPLLGMSYKTLQYRLEKFAIE 457 >UniRef50_B8GTB8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GTB8_THISH Length = 453 Score = 539 bits (1389), Expect = e-151, Method: Composition-based stats. Identities = 147/463 (31%), Positives = 220/463 (47%), Gaps = 15/463 (3%) Query: 42 ALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGL 101 ++ + + + + + + +E +V D +P DG+ Sbjct: 6 VVVITEDDEVMRELVVNVLHGIDATVIPMESSQESLDFIENNEVAVVVTDLRMPR-IDGM 64 Query: 102 IPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNAL 161 + + + + L G + + + ++ FD + AL Sbjct: 65 KVLDFARQKNPLTQVILMTGHATVES-AVQSLKAGAFDYICK---PFENVELRHTVERAL 120 Query: 162 LIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGK 221 L +NM + A +IG S M ++ + I+ AA D +VLI+GE+GTGK Sbjct: 121 SHWNLSRENMRLREENKVFAEG-DVIIGRSAAMDEVHRLIDAAAAYDCSVLITGESGTGK 179 Query: 222 ELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNG 281 ELVA+ IH SPR N V +NCAA+PE + ESELFG+ KGAFTGA + G FE A+ G Sbjct: 180 ELVARQIHLKSPRRDNSFVAINCAAIPEQIIESELFGYQKGAFTGAERAKPGLFETANGG 239 Query: 282 TLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFR 341 T+FLDE+ SL+LQAKLLRVLQ R+GD V+VRVLAATNRD+ + FR Sbjct: 240 TIFLDEVNNASLSLQAKLLRVLQDATFYRLGDTEPRHVNVRVLAATNRDVPGLIAQETFR 299 Query: 342 ADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFP 401 DL++RL V + +P LR+R DDV LLA YF + R +S L + +P Sbjct: 300 EDLYYRLRVIEIHIPALRDRRDDVPLLANYFISKYAKRFNKPVDGMSTQVLGALMRHDWP 359 Query: 402 GNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATE 461 GNVRELE+ I RA++L + + V+ + + E Sbjct: 360 GNVRELENVIQRALILCQGKVIDEGVLPPEISRGTELSVRAIDHMQP---------QTLE 410 Query: 462 AFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLKD 504 + IR+ L + + + A CA +L D + L R KR +++ Sbjct: 411 EVEVYFIRKTLRETNGDRALCAEILGIDKSTLWRKIKRYSIEE 453 >UniRef50_D0LLW1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LLW1_HALO1 Length = 501 Score = 539 bits (1389), Expect = e-151, Method: Composition-based stats. Identities = 143/458 (31%), Positives = 223/458 (48%), Gaps = 8/458 (1%) Query: 42 ALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGL 101 +L D I ++ + + R + R V D +P G+ Sbjct: 17 VVLVVDDESGIVDSLTKIFQREGLRVLGASDGAEGLELLRKHRVGVLLTDLMMPHT-TGM 75 Query: 102 IPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNAL 161 + + V + L + + M+ +D + R A + NAL Sbjct: 76 DLLKAAKTVAPETEVVLMTAYGTVET-AVQAMKEGAYDFVTKPLKR---AHVVRIVKNAL 131 Query: 162 LIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGK 221 + L +N + + + +IG S + + A SD VL+ GE+GTGK Sbjct: 132 EKQSLVVENRVLRAQLAEQRSR--AVIGSSLAWRRTMDIVHQAAPSDATVLLLGESGTGK 189 Query: 222 ELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNG 281 EL+A+++HE S RA P + +NCAA+PES+ E ELFG+ KGAFTGA S+R G+FE A G Sbjct: 190 ELLARSLHEGSARADKPFIAINCAAIPESILEGELFGYEKGAFTGATSSREGRFEAASGG 249 Query: 282 TLFLDEIGELSLALQAKLLRVLQYGDIQRVGDD-RCLRVDVRVLAATNRDLREEVLAGRF 340 TLFLDE+GE+ +Q KLLRVLQ G+I+R+G R +D+R++AATN +L + V GRF Sbjct: 250 TLFLDEVGEMPRHVQVKLLRVLQEGEIERLGGSGRTRPIDIRLIAATNVELAKAVQEGRF 309 Query: 341 RADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSF 400 R DL++RL+V ++VPPLRER DD+ LL +F + + G + A + L Y++ Sbjct: 310 REDLYYRLNVISIAVPPLRERRDDIPLLVQHFLQVYADKNGKFMAGCTQDALDRLCRYAW 369 Query: 401 PGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREAT 460 PGNVRELE+A+ RAVVL+R + + + ++ + Sbjct: 370 PGNVRELENAVERAVVLSRGEVLDEAALPFEVRSGEGALAEAAGAGDPGGALRFAVGTPL 429 Query: 461 EAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAK 498 + I + L + A++L ++R + Sbjct: 430 AEIEMAVIHETLRHTKGDKRLAAKLLGIATRTIYRRLE 467 >UniRef50_Q1NPJ0 Response regulator receiver n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NPJ0_9DELT Length = 461 Score = 539 bits (1389), Expect = e-151, Method: Composition-based stats. Identities = 134/465 (28%), Positives = 228/465 (49%), Gaps = 10/465 (2%) Query: 40 ASALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYD 99 A L+ D L+ + A G ++ + D ++ + D Sbjct: 2 ARILVVDDEEDIRTALRIVLSGEGYEVETAANGRVAID-LLEKHSFDMVITDLKM-ELAD 59 Query: 100 GLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSN 159 G ++ + + + + I + ++ M+ D L + N Sbjct: 60 GYDVLKKVREFDSLTPVIIITAFGSIDS-AVEAMKLGATDYIVKPFLH---EDIKFTVRN 115 Query: 160 ALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGT 219 L L +N+ + + +++GLS M ++ IE A + N++I+GE+GT Sbjct: 116 ILEHGSLRLENLALKRQL-SQKLDNKKIVGLSEAMNKVFDTIEKAAPTKANIMITGESGT 174 Query: 220 GKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMAD 279 GK L+A+A+H+ SPR P + +NCAA+PE++ ESELFG+ KGAFTGA SN++G MAD Sbjct: 175 GKGLLAEAVHQNSPRRDKPFMAINCAAIPETLLESELFGYKKGAFTGANSNKTGLITMAD 234 Query: 280 NGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGR 339 GTLFLDEIG++ + +Q+K+L+VL+ G++ +GD + VD+R+++ATN+DL + Sbjct: 235 GGTLFLDEIGDMPMVIQSKILKVLESGEVLPLGDTKTRNVDLRIISATNKDLESCIREKT 294 Query: 340 FRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYS 399 FR DL++RL+V + +P LRER +D+ LLA F ++ GA + Y Sbjct: 295 FREDLYYRLNVIEIRMPALRERREDIPLLAAKFIKEEEAVPDKVVKGFDEGAMKAMMAYP 354 Query: 400 FPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREA 459 +PGNVREL++ + RAV+ A + + P Q L+ Sbjct: 355 WPGNVRELKNVVERAVIFAGGEQITPAELPAKIR---RGDATAGPGGNTEVSGLQPLKAM 411 Query: 460 TEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLKD 504 ++++ I AL + + A+ L D+ L+R +LG+ + Sbjct: 412 VYDYEKDIIINALNRFDGSKEMVAKTLGIDLTTLYRKMSKLGIDE 456 >UniRef50_B1ZR63 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZR63_OPITP Length = 490 Score = 539 bits (1389), Expect = e-151, Method: Composition-based stats. Identities = 155/484 (32%), Positives = 227/484 (46%), Gaps = 27/484 (5%) Query: 38 CDASALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDP 97 +L + + + + + A + D LPD Sbjct: 1 MSFEKILIVEDELVVRNLLQSIFQRHKLPVTCANNLAEATAQLQREQFDLMMLDIRLPDG 60 Query: 98 YDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGAL 157 DG ++ + + + G + + + M+ FD + L Sbjct: 61 -DGQKFLEQVAAMPERPLVVMVTGYGSVES-AVGCMRAGAFDYVLK---PFSPSQIDVIL 115 Query: 158 SNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGET 217 A QL N L D E ++G SP M +L++ IE VA +D VLI+GE+ Sbjct: 116 KKAQTYRQLLRVNRLLSDDPEDEE---GILVGRSPAMIRLRQIIERVAPTDATVLITGES 172 Query: 218 GTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEM 277 GTGKE+VA+ + SPR + +NCAA+ E++ ESE FGH +GAFTGA R G+FE+ Sbjct: 173 GTGKEMVAREFYRRSPRRSQAFIKVNCAAISENLIESEFFGHERGAFTGATERREGRFEL 232 Query: 278 ADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLA 337 A GTL LDE+ E+ LQAKLLRVLQ + +RVG R ++V+VR++A +NRDL V Sbjct: 233 AHQGTLLLDEVSEIPANLQAKLLRVLQEREFERVGGSRTIKVNVRIIATSNRDLMRHVEK 292 Query: 338 GRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQH 397 G FR DL++RL+VFP+ VP LRER +D+ LLA +F + + G+ + AR L Sbjct: 293 GEFRQDLYYRLNVFPVHVPALRERPEDIALLADHFLRRFARKHGVKVTGFADSARAALIG 352 Query: 398 YSFPGNVRELEHAIHRAVVLARATRSGDEVIL----EAQHFAFPEVTLPTPEVAAVPVVK 453 Y +PGNVREL++ + RAV+L+ R+ L + P P PEV A+PV Sbjct: 353 YRWPGNVRELQNTVERAVILSETGRAVTAAALGLPGDFLPGELPLEPAPAPEVPALPVAA 412 Query: 454 QNLREA---------------TEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAK 498 A + +++ IR AL Q N A L + L + Sbjct: 413 VAEEPAGASPTVTDSHGQVLKLDELEKQAIRAALRQTGGNRTQAAAELGISIRTLRNKLQ 472 Query: 499 RLGL 502 L Sbjct: 473 EYRL 476 >UniRef50_C8R1J5 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R1J5_9DELT Length = 467 Score = 538 bits (1388), Expect = e-151, Method: Composition-based stats. Identities = 161/469 (34%), Positives = 237/469 (50%), Gaps = 15/469 (3%) Query: 43 LLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLI 102 +L D + + L ++ +G + D +D +P P +GL Sbjct: 4 ILVVDDELSMREFLKILLEEEGYAVSCADGGTAALELLAREDYDLLISDIRMPPP-NGLE 62 Query: 103 PGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEE-LRLIAALAAGALSNAL 161 + ++ + + L + M+ +D + + I + ALS+ Sbjct: 63 LLVRAKEIKPELPVVLVTAFASPDD-AVSAMKSGAYDYITKPFKVDEIKDIVGTALSSP- 120 Query: 162 LIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGK 221 + PG++ + +IG SP M ++ I VA + NVLI GE+GTGK Sbjct: 121 -----QPLPAKPGESEVAATNEFEGIIGGSPEMRKIYDIISRVAPTRANVLIQGESGTGK 175 Query: 222 ELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNG 281 ELVA+AIH SP + + V + C+A+PES+ ESE+FGH KGAFTGA S+R+G FE A+ G Sbjct: 176 ELVARAIHRLSPASGHEFVPIVCSAIPESLFESEVFGHTKGAFTGAASSRAGLFEQANQG 235 Query: 282 TLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFR 341 T FLDEIGEL+ +Q KLLRVLQ +I+RVG R+ +RV++ATN+DL EEV+AGRFR Sbjct: 236 TAFLDEIGELTPIIQTKLLRVLQEREIKRVGATESTRIQIRVISATNKDLEEEVMAGRFR 295 Query: 342 ADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFP 401 DLF+RL+V P+ VPPLRER DV LL +F + +S+ A +L Y FP Sbjct: 296 EDLFYRLAVVPIRVPPLRERKGDVPLLVDHFLAKYARLFNKDIHRISSYAMEVLLDYDFP 355 Query: 402 GNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTP------EVAAVPVVKQN 455 GNVRELE+ I R V + + E + + H E + A V + Sbjct: 356 GNVRELENIIERGVAMENSQIILPESLTLSGHRRSREPEPAGGTVDDKRQEIAEEVFSRG 415 Query: 456 LREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLKD 504 L +RE I AL + ++ A +L T +L K+ G+ + Sbjct: 416 LEPTLADLEREMIVNALEKAGNSKTRAAELLRTSFRSLRYKIKKYGIDN 464 >UniRef50_Q39TH4 Transcriptional regulator, NifA subfamily, Fis family n=1 Tax=Geobacter metallireducens GS-15 RepID=Q39TH4_GEOMG Length = 556 Score = 538 bits (1388), Expect = e-151, Method: Composition-based stats. Identities = 172/505 (34%), Positives = 244/505 (48%), Gaps = 37/505 (7%) Query: 20 GHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGL--AKDVLGRRFALEGH---P 74 + + L + L D L+++ L F H P Sbjct: 58 EVDKTIESGLQRLGEFLGADRCNLVQFSEDGSRVLVFHSWIHDDAKPDPGFIAPDHNLFP 117 Query: 75 RLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQ 134 + G VV+F +LP I +L++ + V +P+ G ++ G L+L ++ Sbjct: 118 WFAKMFHLGKVVQFSHLDDLPAEAATDITALLALRIKSQVSVPISVGGHVFGTLSLATVR 177 Query: 135 PDQFDVFSD-EELRLIAALAAGAL-------SNALLIEQLESQNMLPG------DATPFE 180 + LRL+ + A AL +Q++ N Sbjct: 178 SYRSWPDELVPRLRLVGEIFANALVRKQKELQIRKAFQQIKELNEELAADCTYLREEIDL 237 Query: 181 AVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLV 240 +IG S + ++ +I+ +A +D VLI GETGTGKELVA+AIH AS R P+V Sbjct: 238 NYDVHHIIGQSLPLKRVLAKIQQIALTDTTVLILGETGTGKELVARAIHAASQRRDRPMV 297 Query: 241 YLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLL 300 +NCA+LP ++ ESELFGH KGAFT A + G+FE AD TLFLDEIGEL L QAKLL Sbjct: 298 KVNCASLPANLIESELFGHEKGAFTSAQVRQIGRFEFADRNTLFLDEIGELPLESQAKLL 357 Query: 301 RVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRE 360 RVLQ G+ +R+G R L+VDVR++AATNRDL EEV GRFR DL++RL++FP++VPPLRE Sbjct: 358 RVLQEGEFERLGSSRTLKVDVRIVAATNRDLEEEVRKGRFRQDLWYRLNIFPITVPPLRE 417 Query: 361 RGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARA 420 R +D+ LL F + + G S + AG LQ Y +PGNVRELE+ I RA + Sbjct: 418 RTEDIPLLINLFVNKFGRKLGKSIRRIPAGVMKSLQAYDWPGNVRELENVIERAAINTVG 477 Query: 421 TRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNW- 479 L++ R E +R I Q LA + Sbjct: 478 PSLQLLDNLKSSLVTEKTAAP---------------RLTLEEAERSHILQVLADTNGRIE 522 Query: 480 --AACARMLETDVANLHRLAKRLGL 502 A +L + + L ++LG+ Sbjct: 523 GPKGAALILGINHSTLRARMRKLGI 547 >UniRef50_A1AL12 Transcriptional regulator, Fis family n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A1AL12_PELPD Length = 687 Score = 538 bits (1386), Expect = e-151, Method: Composition-based stats. Identities = 168/524 (32%), Positives = 251/524 (47%), Gaps = 49/524 (9%) Query: 6 DVLANIAIELQRGI---GHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLAKD 62 LA + + + + + L D L++ D + + ++ Sbjct: 173 SFLAETSSVFAKSTLPSDLDHQIEHALWRLLDHFHGDRCGLIKVDLEGEKTIITHAVYRE 232 Query: 63 VLGR----RFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPL 118 L R + P R G F +ELP D ++ + + + +PL Sbjct: 233 GLERLPGDVDLVALFPWSFRQLREGRCYCFSDLAELPVEADRDRASWMAMGIRSGLHVPL 292 Query: 119 FAGQNLIGALTLDGMQ---PDQFDVFSDEELRLIAALAAGALSN--------------AL 161 + + ++ DV + L++I L AL A Sbjct: 293 RVENRVHYLIVVESHSGILAGTEDVLN--RLQIIGDLFVNALHRKATEDELRSSCDEIAR 350 Query: 162 LIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGK 221 L ++LE + Q++G S + + +E VA + VL+ GETGTGK Sbjct: 351 LKDKLELEADYLRSEVRASRFN-DQIVGQSEPIQGVLAMVEQVAPTPSTVLVYGETGTGK 409 Query: 222 ELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNG 281 ELVA+AIH SPR +V +NCA+LP S+ ESELFG +GA+TGA++ + G+FE+AD Sbjct: 410 ELVAQAIHNHSPRRDKLMVKVNCASLPSSLVESELFGRERGAYTGALTRQMGRFELADGS 469 Query: 282 TLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFR 341 +LFLDEI ELSL LQ+KLLRVLQ G+ +R+G R ++VDVRV+AATNR+L EEV GRFR Sbjct: 470 SLFLDEIAELSLELQSKLLRVLQEGEFERLGSPRTIKVDVRVIAATNRNLLEEVRKGRFR 529 Query: 342 ADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFP 401 DL++RLSVFP+ VPPLRER +D+ LLA F + G + ++ LQ YS+P Sbjct: 530 EDLYYRLSVFPIVVPPLRERREDIPLLAWEFVRDFNEKMGKRILRIAKRDMLALQSYSWP 589 Query: 402 GNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATE 461 GNVREL + I AV+++ + E A P++T E Sbjct: 590 GNVRELRNVIEYAVIVSPGDELKIR-LPENIVNAPPQMT------------------TLE 630 Query: 462 AFQRETIRQALAQNHHNW---AACARMLETDVANLHRLAKRLGL 502 +R I+ L + A +L+ + A L+ K+LG+ Sbjct: 631 EMERHYIQDVLRRTEWRIKGEGGAAHILDLNPATLYSRMKKLGI 674 >UniRef50_B3DYD7 DNA-binding response regulator, NtrC family (Contains REC, AAA-type ATPase, and DNA-binding Fis domains) n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DYD7_METI4 Length = 486 Score = 538 bits (1386), Expect = e-151, Method: Composition-based stats. Identities = 141/460 (30%), Positives = 225/460 (48%), Gaps = 19/460 (4%) Query: 42 ALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGL 101 ++L D + + + ++ R F+ + + + V D + GL Sbjct: 22 SILIVDDEEDVFYSFQRFLEEFPVRTFSAKSGEEALKLLKTQAVDVIIMDIRMGK-KSGL 80 Query: 102 IPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNAL 161 +E K+ + + ++ M+ +D ++ AL Sbjct: 81 ETLKEIRKLFPQQVVVIMTAYGTCQT-AIEAMKMGAYDYILK---PFNMIELKSVITKAL 136 Query: 162 LIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGK 221 +L + + +IG S M Q+ K I VA ++ VLI GE+G+GK Sbjct: 137 EASKLTKEVSSQAFPANAFDSRSLHIIGKSAPMQQVYKLIGQVAPTNATVLIVGESGSGK 196 Query: 222 ELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNG 281 ELVA+AI++ S RA P + +NCAA+PE++ ESELFGH +G+FTGA++ R GKFE D G Sbjct: 197 ELVARAIYQYSLRANKPFIAINCAAIPENLLESELFGHERGSFTGAMAQRIGKFEQGDGG 256 Query: 282 TLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFR 341 T+FLDEIGE+ ++ QAK+LRVLQ G+ R+G + ++ DVR++AATN+DL V FR Sbjct: 257 TVFLDEIGEMPISTQAKILRVLQEGEFSRLGSNEPIKTDVRIIAATNKDLAAAVAKREFR 316 Query: 342 ADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFP 401 ADLF+RL+V +S+PPLRER +D+ L +F + R + +S+ A L Y +P Sbjct: 317 ADLFYRLNVVKISLPPLRERVEDIPDLIDHFLAKHRRYLPNAPTCISSQAMRSLLAYHWP 376 Query: 402 GNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVV--------- 452 GN+RELE+ I RA+VLA + + + E A + P Sbjct: 377 GNIRELENVIQRAMVLATSATIQNCHLPEEIQAAEKKKYFKEKSGKGGPAGGLDFLVQEI 436 Query: 453 -KQNLREATEAFQRETIRQ----ALAQNHHNWAACARMLE 487 +LR+ + + + L + + + R+L Sbjct: 437 VGSDLRDHRLETLKSLLHRIYTQVLEECEGDESKAKRILG 476 >UniRef50_Q1IL93 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Acidobacteria RepID=Q1IL93_ACIBL Length = 484 Score = 537 bits (1384), Expect = e-151, Method: Composition-based stats. Identities = 145/471 (30%), Positives = 224/471 (47%), Gaps = 13/471 (2%) Query: 33 RQVLECDASALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADS 92 + L L+ D L + A++G L +A D Sbjct: 13 ARELSAAGVVLIIDDEAAIRESLQTLLELEGYQVDTAVDGGDGLMQMAAH-PYDLVLLDF 71 Query: 93 ELPDPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAAL 152 LPD +G+ +E + + + + ++ MQ + Sbjct: 72 ALPD-RNGIEILKEIRSRDTEISVIMITAYGTVEN-AVNAMQAGATNFIQKPW---DNEK 126 Query: 153 AAGALSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVL 212 + A+ ++E +N+ A + +IG S M ++ + +A S VL Sbjct: 127 LLADVGAAIARRRVEEENLQLKRALK-QRYNFENIIGKSEPMLRIFDLVTQIAPSRSTVL 185 Query: 213 ISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRS 272 + GE+GTGKEL+AKAIH S R V +N ++P + ES LFGHVKGAFT AI+++ Sbjct: 186 LQGESGTGKELIAKAIHMNSTRKDRAFVPINTGSMPTDLLESTLFGHVKGAFTSAIASKK 245 Query: 273 GKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLR 332 G FE+AD GTLFLDEIG +S+ QAK+LRVLQ +G + ++VDVR++AATN DLR Sbjct: 246 GLFEVADGGTLFLDEIGTMSMETQAKILRVLQDRKFMHLGGVQEIQVDVRIIAATNVDLR 305 Query: 333 EEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGAR 392 + V G+FR DLF+RL+V + +PPLR+R DV LL +F ++ + ++ A Sbjct: 306 QLVKEGKFREDLFYRLNVITIDLPPLRQRRLDVPLLCEHFIKKFCEENAKPLMRMTPEAL 365 Query: 393 NLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVV 452 L Y++ GNVRELE+ I RAVVLA +++ + ++ A Sbjct: 366 RPLLDYNWQGNVRELENVIERAVVLANGPSITIDLLPDNVVGRGSSLSFVETRPDA---- 421 Query: 453 KQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 +L E E +R I L + N A ++ L++ KRL ++ Sbjct: 422 --SLFEIMEDCERRIIVDMLEKVGWNQTEAAEKFRIPLSTLNQKIKRLSIE 470 >UniRef50_B5Y7I9 Acetoacetate metabolism regulatory protein AtoC (Ornithine/argininedecarboxylase inhibitor) (Ornithine decarboxylase antizyme) n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y7I9_COPPD Length = 459 Score = 536 bits (1383), Expect = e-151, Method: Composition-based stats. Identities = 159/461 (34%), Positives = 235/461 (50%), Gaps = 29/461 (6%) Query: 41 SALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDG 100 L+ D L L++ L A +G L ++ A V D +P DG Sbjct: 20 VVLVADDEPSIRELVQTVLSQQSLEVVTASDGEEAL-KVSEAQVVDCALVDIRMPK-VDG 77 Query: 101 LIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDE-ELRLIAALAAGALSN 159 L ++ V + + + T++ M+ +D + ++ +A AL Sbjct: 78 LAVLEQL--VLKNIPVIVITAYGTSDV-TIEAMRRGAYDFITKPFDIDDLAEKVRKALDY 134 Query: 160 ALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGT 219 + E L + M+G+S M ++ K I VA++D+ VLI+GE+GT Sbjct: 135 SKTTEVL---------PIKGSKETSSLMVGMSAAMQEVYKLIGRVASTDVTVLITGESGT 185 Query: 220 GKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMAD 279 GKELV++AIH SPR P V +NCAA+PE + ESELFG+ KGAFTGA + GKFE+A+ Sbjct: 186 GKELVSRAIHYNSPRNKGPFVVVNCAAIPEDLLESELFGYEKGAFTGADERKIGKFELAN 245 Query: 280 NGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGR 339 +GT+ LDEIG++S LQAK+LRVLQ I+R+G R + VDVRVLAATN+DL+ V +G Sbjct: 246 HGTILLDEIGDMSPMLQAKILRVLQEHVIERIGGTRSIPVDVRVLAATNKDLQSLVKSGS 305 Query: 340 FRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYS 399 FR DL+ RL+V + +PPLRER +D+ LLA +F ++ ++ L Y Sbjct: 306 FREDLYFRLNVVQIQLPPLRERKEDIPLLADHFIKKYAAETSKEVTGVTPEVMAALMAYD 365 Query: 400 FPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREA 459 +PGNVRELE+ I RAV L +V+ P + + L+E Sbjct: 366 YPGNVRELENIIARAVALCSGKVLTLDVLPPQVVEPKPAL--------------RPLKEV 411 Query: 460 TEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRL 500 +R RQA+A + A A +L+ D+ + K Sbjct: 412 LLEAERRAFRQAVAVAGLDPQAVADLLQVDLDYAKKRLKEW 452 >UniRef50_Q1IQS1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IQS1_ACIBL Length = 466 Score = 536 bits (1383), Expect = e-151, Method: Composition-based stats. Identities = 141/463 (30%), Positives = 211/463 (45%), Gaps = 15/463 (3%) Query: 40 ASALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYD 99 L D +Q I + + E A AD + + Sbjct: 6 RIRFLIVDDQQSIRKLCIAIGNTLGFICSEAESAEAALAALETQSPDIILADLRMGE-LS 64 Query: 100 GLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSN 159 G+ K+ + + G I + M+ +D + L Sbjct: 65 GIDFLASVKKLLPRTEVAIMTGYGSIET-AVQSMKLGAYDYITK---PFRVEELKIILQR 120 Query: 160 ALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGT 219 +L ++N + E ++ ++G S + + + + + + VLI GE+GT Sbjct: 121 MAEKVRLVAENHFLRERVNTE-MELHGIVGSSAKIQDVLRMVGRLKDTRTPVLICGESGT 179 Query: 220 GKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMAD 279 GKELVA+A+H A P V ++C +L ++ ESELFGH KGAFTGAI + G F+ A+ Sbjct: 180 GKELVARAMHFRGGFAKRPFVAVDCGSLVPTLIESELFGHEKGAFTGAIKPKEGLFQAAN 239 Query: 280 NGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGR 339 GT+FLDEIGEL L LQAKLLRVLQ ++ VG ++ ++VDVRV+AATNRDL G Sbjct: 240 GGTIFLDEIGELPLDLQAKLLRVLQDKQVRPVGSNQSVKVDVRVIAATNRDLEAGYKTGT 299 Query: 340 FRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYS 399 FR DL+ RL+V + +P LRER D+ L +F ++ G V +++ A L Y Sbjct: 300 FRKDLYFRLNVVTVYLPSLRERKSDIPSLIQHFIDRPSA--GREGVEVTSQAMKSLMQYD 357 Query: 400 FPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREA 459 +PGNVRELE+ I RAV L + + + P+ P Sbjct: 358 WPGNVRELENCIERAVALGNGEVIDVDDLPPSLQAMAPKKNAPAVSEGYDSTD------- 410 Query: 460 TEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 E +R TI++ Q + +ML A L+R KR + Sbjct: 411 LEDIERTTIQRVFDQVGGDKGLALKMLGISRATLYRKIKRYNI 453 >UniRef50_Q1D574 Sigma-54 dependent transcriptional regulator, Fis family n=7 Tax=Myxococcales RepID=Q1D574_MYXXD Length = 630 Score = 536 bits (1383), Expect = e-151, Method: Composition-based stats. Identities = 160/492 (32%), Positives = 256/492 (52%), Gaps = 22/492 (4%) Query: 12 AIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLAKDVLGRRFALE 71 + L + + L+ +V D L+ ++ ++++ + + Sbjct: 140 SERLLGLYDLERLLEGLMDEAIEVTRADKGFLILMENGDPRVKVARNVSRENIEDAVEKD 199 Query: 72 --GHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFAGQNLIGALT 129 + + + + + P+ +L+VH+ + +PL +L G L Sbjct: 200 KISDSIIAKVVKEQKALIVADALDSPEFNKSESVV--NLRVHSVMCVPLMQKGDLFGVLY 257 Query: 130 LDGMQP-DQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQTQMI 188 + + ++F+ S + L + AA A+ L NA+L+ L+ N + ++ Sbjct: 258 VGNDRLVNRFEPKSADMLTIFAAQASLILQNAMLVSDLKLDNTELRRKLEDQRY--GDIV 315 Query: 189 GLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALP 248 G GM + K I+ +A +D++VLI+GETGTGKEL+A+ IH S RA P + +NC A+P Sbjct: 316 GACQGMRDVYKRIDKIAPTDISVLITGETGTGKELIAREIHRRSTRAKGPFITINCGAIP 375 Query: 249 ESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDI 308 E++ ESELFGHVKGAFTGA++ ++GKF+ A GTLFLDEIGE+ L LQ KLLR LQ + Sbjct: 376 ENLLESELFGHVKGAFTGAVATKAGKFQAAIGGTLFLDEIGEMPLQLQVKLLRALQEKVV 435 Query: 309 QRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILL 368 +VGD+R VD+RV+AATN+ L +EV FR DL++RL+V L +PPLRERG+DV++L Sbjct: 436 YKVGDNRGEPVDIRVVAATNKVLEDEVKKNTFREDLYYRLNVVTLKLPPLRERGEDVVVL 495 Query: 369 AGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVI 428 +F ++ + A ++ Y +PGN+RELE+ + +AVVLA G + + Sbjct: 496 GRFFLQKYAREFSSKARGFTPSATVSMRKYGWPGNIRELENRLKKAVVLADKPLLGPDDL 555 Query: 429 LEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLET 488 P L +A E FQ+ I + LA+N+ N A+ L Sbjct: 556 DLKPENLEPI---------------MPLLQAKEEFQKRYINEVLARNNGNRTKTAKDLGV 600 Query: 489 DVANLHRLAKRL 500 D + R ++L Sbjct: 601 DPRTIFRHLEKL 612 >UniRef50_Q1DD85 Sigma-54 dependent DNA-binding response regulator FrgC n=3 Tax=Myxococcus xanthus RepID=Q1DD85_MYXXD Length = 466 Score = 536 bits (1383), Expect = e-151, Method: Composition-based stats. Identities = 153/476 (32%), Positives = 225/476 (47%), Gaps = 24/476 (5%) Query: 37 ECDASALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPD 96 + LL D + L + L A +G L A+ + V +D +P Sbjct: 4 SLRGTVLLVDDDPAVAKVLGALLTQAGLTTHAARDGQEAL-ALLASKPVDVVVSDVRMP- 61 Query: 97 PYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGA 156 DGL E + V + L + L ++ M+ D Sbjct: 62 GMDGLQVLAEVARGWPDVPVILLTAHGTV-PLAVEAMKAGAADFVLK---PFDREEILFT 117 Query: 157 LSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGE 216 + ALL Q G+ + IG S M ++ + AA VL+ GE Sbjct: 118 VRKALLRAQ--------GEEARQQVRPTGGFIGRSRAMADVQAVLAKAAAGTATVLLRGE 169 Query: 217 TGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFE 276 +GTGKEL AKA+H+ASPR P V L+CAALP+++ ESELFG+ KGAFTGA + + G+ E Sbjct: 170 SGTGKELAAKAVHDASPRRDGPFVKLHCAALPDTLLESELFGYEKGAFTGAATRKPGRVE 229 Query: 277 MADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVL 336 +A GTLFLDE+G++S A+Q KLLRV+Q +++R+G + ++VDVR +AAT++ L E V Sbjct: 230 LAHGGTLFLDEVGDISPAVQVKLLRVIQERELERLGGTQTVKVDVRFVAATHQPLEERVK 289 Query: 337 AGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQ 396 GRFR DLF+RL+V P+ +P LRER DD+ LA +F E G L L+ Sbjct: 290 EGRFREDLFYRLNVVPVWIPALRERPDDIEPLALHFLEVHAKTNGRPPFTLMTDGLAALR 349 Query: 397 HYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVA--------- 447 +PGNVR+L++ + R VVL+ G +L+ P Sbjct: 350 AQPWPGNVRQLQNFLERLVVLSDTQVIGGREVLQELARQPGLAPAPFAATPSVSALEAPT 409 Query: 448 -AVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 V + L + +R+ + AL + N AR+L L+ + GL Sbjct: 410 VPVTDSARTLESQRKEMERQAMADALKRAGDNRTLAARLLGISRRTLYNKLEEYGL 465 >UniRef50_Q07WT9 Transcriptional regulator, Fis family protein n=4 Tax=Gammaproteobacteria RepID=Q07WT9_SHEFN Length = 526 Score = 536 bits (1383), Expect = e-151, Method: Composition-based stats. Identities = 236/515 (45%), Positives = 313/515 (60%), Gaps = 20/515 (3%) Query: 8 LANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLAKDVLGRR 67 +I +L R + +R+ RLI +++ + CD ALL+ +P+A+ GL + L R+ Sbjct: 6 FIDIVEDLNRDLIKSERYLRLILAIQRAIPCDVVALLKLKHDHLVPVAVVGLKQQALARQ 65 Query: 68 FALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIP-GQESLKVHACVGLPLFAGQNLIG 126 F++ HPRL+ I + RF ADS LPDPYDGL+ G E L VH C+G ++ G Sbjct: 66 FSINHHPRLQQILANPHITRFDADSTLPDPYDGLVDDGSEQLHVHDCMGSTIYIDGKAWG 125 Query: 127 ALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLES--QNMLPGDATPFEAVKQ 184 LTLD M+ FD + E R A A A+S + IE LE + Sbjct: 126 VLTLDAMKAGSFDSLNPTETRAYIAAVAAAISTSEHIEALEVQVERNHQVAQCMLATAGP 185 Query: 185 TQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNC 244 + +IG S +T L EI VA SDL+VLI+GETG GKELVAK+IH+ S R+ PLV +NC Sbjct: 186 SSIIGNSVAITDLLSEINTVAVSDLSVLITGETGVGKELVAKSIHQQSRRSEQPLVQINC 245 Query: 245 AALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQ 304 AALPES+ ESELFGHVKGA++GA+S+R G+FE+AD GTLFLDE+GEL LA+QAKLLR LQ Sbjct: 246 AALPESIVESELFGHVKGAYSGAVSDRRGRFELADGGTLFLDEVGELPLAVQAKLLRALQ 305 Query: 305 YGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDD 364 G+IQRVG D + VDVR++AATNR+L+ EV GRFRADL+HRLSV+PL VPPLRERG D Sbjct: 306 NGEIQRVGSDNIIVVDVRIVAATNRNLQLEVKEGRFRADLYHRLSVYPLPVPPLRERGKD 365 Query: 365 VILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSG 424 VILLAGYF E+ + + G++++ L A L Y +PGNVRELEH + RA + A + + Sbjct: 366 VILLAGYFLEKSQHQLGVAKLRLQQTAIEQLTQYHWPGNVRELEHLLSRAALRAISEQGR 425 Query: 425 DEVILEAQHFAFPEV-----------------TLPTPEVAAVPVVKQNLREATEAFQRET 467 I+ A V+ LR++T+ +QR+ Sbjct: 426 HASIISISRVHLGSEFVVSHTVAPAIAEVDIINDNNAAAALSQVLTLGLRDSTDEYQRQI 485 Query: 468 IRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 I+ LA N AA AR L+ D +NL R +RLGL Sbjct: 486 IQTVLATERGNLAAVARSLQLDRSNLIRTMRRLGL 520 >UniRef50_B4U9N2 Transcriptional regulator, NifA subfamily, Fis Family n=5 Tax=Aquificaceae RepID=B4U9N2_HYDS0 Length = 502 Score = 536 bits (1382), Expect = e-151, Method: Composition-based stats. Identities = 140/509 (27%), Positives = 239/509 (46%), Gaps = 34/509 (6%) Query: 5 VDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLA-KDV 63 V +L +++ L + ++ + S + YD + Sbjct: 12 VSLLTSVSKAL-SQKDFDKALRDILKIFYSFWGVEYSYIAFYDKSTKTIKIREAFGFNQS 70 Query: 64 LGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFAGQN 123 + + G + I + V + + A +G+P+ + Sbjct: 71 VKKILFESGKGIVGNIFKNSIPVVIKDPKHDKAFLNKTKILDKIKNE-AFIGVPIRSEDR 129 Query: 124 LIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLE----------SQNMLP 173 IG L D+ EEL I + + + +L + Sbjct: 130 TIGVFCLFK------DLNKHEELTRIVDIMLVVSAMIGMSYKLFGILQEEKASWEEQRQL 183 Query: 174 GDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASP 233 + +G S + LK I+ +A +D VL+ GE+G GK L+AKAIH S Sbjct: 184 LAKEFSDTFSIEGFVGKSEAIITLKDTIQKIAMTDSTVLLLGESGVGKTLIAKAIHTLSE 243 Query: 234 RAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSL 293 R P + +NCAA+PE++ E+ELFG+ KGAFTGA+ ++ GKFE+A+ GT+FLDEIGEL L Sbjct: 244 RKDKPFISVNCAAIPETLLEAELFGYEKGAFTGAVHSKKGKFELANGGTIFLDEIGELPL 303 Query: 294 ALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPL 353 Q+KLLRV+Q +++++G ++ + V+VRV+A+TN+DL V G FR DL++RL+V P+ Sbjct: 304 QSQSKLLRVIQEKELEKLGAEKSIFVNVRVIASTNKDLASMVARGEFREDLYYRLNVIPI 363 Query: 354 SVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHR 413 VP LRER +D+ LL +F ++ + A L +Y++PGN+RELE+ I R Sbjct: 364 RVPALRERKEDIPLLVKHFLDKFNKHYKKHIN-IEKEAMEALVNYNWPGNIRELENLIER 422 Query: 414 AVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALA 473 VV+ + ++V+L ++ ++ E+ ++E I++AL Sbjct: 423 LVVINNKDITKEDVLL--------------ATKINSNKLQTDIPSIIESTEKEAIKKALE 468 Query: 474 QNHHNWAACARMLETDVANLHRLAKRLGL 502 + + + A++L + L K+ + Sbjct: 469 KCGYVKSKAAKILGLTLRQLDYRIKKYNI 497 >UniRef50_P09133 Nif-specific regulatory protein n=18 Tax=Rhizobiales RepID=NIFA_AZOC5 Length = 615 Score = 536 bits (1381), Expect = e-151, Method: Composition-based stats. Identities = 168/560 (30%), Positives = 257/560 (45%), Gaps = 62/560 (11%) Query: 4 SVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYD-SRQFIPLAIDGLAKD 62 ++ + I+ L + ++ L +L+ + D +A G + Sbjct: 52 ALIGVYEISKILTAPRRLEVTLANVVNVLSSMLQMRHGMICILDSEGDPDMVATTGWTPE 111 Query: 63 VLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPY-DGLIPGQESLKVHACVGLPLFAG 121 + G+ A ++ I + + P + G + +G+P+ A Sbjct: 112 MAGQIRAHVPQKAIDQIVATQMPLVVQDVTADPLFAGHEDLFGPPEEATVSFIGVPIKAD 171 Query: 122 QNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALL-------IEQLESQNMLPG 174 +++G L++D + DE++R + +A L ++L +Q Sbjct: 172 HHVMGTLSIDRIWDGTARFRFDEDVRFLTMVANLVGQTVRLHKLVASDRDRLIAQTHRLE 231 Query: 175 DATPFEAVKQT------------QMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKE 222 A E ++G SP + +L ++VA S+ VL+ GE+GTGKE Sbjct: 232 KALREEKSGAEPEVAEAANGSAMGIVGDSPLVKRLIATAQVVARSNSTVLLRGESGTGKE 291 Query: 223 LVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGT 282 L A+AIHE SPR P V +NCAALPESV ESELFGH KGAFTGA++ R G+FE+A GT Sbjct: 292 LFARAIHELSPRKGKPFVKVNCAALPESVLESELFGHEKGAFTGALNMRQGRFELAHGGT 351 Query: 283 LFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRA 342 LFLDEIGE++ A QAKLLRVLQ G+ +RVG +R L+VDVR++ ATN++L E V G FRA Sbjct: 352 LFLDEIGEITPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVCATNKNLEEAVSKGEFRA 411 Query: 343 DLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPG 402 DL++R+ V PL +PPLRER D+ LA F ++ L + LSA A ++L+ FPG Sbjct: 412 DLYYRIHVVPLILPPLRERPGDIPKLAKNFLDRFNKENKLHMM-LSAPAIDVLRRCYFPG 470 Query: 403 NVRELEHAIHRAVVLARATRSGDEVIL----EAQHFAFPEVTLPTPEVAAV--------- 449 NVRELE+ I R LA + + + P P + V Sbjct: 471 NVRELENCIRRTATLAHDAVITPHDFACDSGQCLSAMLWKGSAPKPVMPHVPPAPTPLTP 530 Query: 450 ---------------------------PVVKQNLREATEAFQRETIRQALAQNHHNWAAC 482 P + ++E + QA+ ++ A Sbjct: 531 LSPAPLATAAPAAASPAPAADSLPVTCPGTEACPAVPPRQSEKEQLLQAMERSGWVQAKA 590 Query: 483 ARMLETDVANLHRLAKRLGL 502 AR+L + ++ + Sbjct: 591 ARLLNLTPRQVGYALRKYDI 610 >UniRef50_B8DQ72 Two component, sigma54 specific, transcriptional regulator, Fis family n=6 Tax=Desulfovibrio RepID=B8DQ72_DESVM Length = 486 Score = 536 bits (1381), Expect = e-151, Method: Composition-based stats. Identities = 154/483 (31%), Positives = 234/483 (48%), Gaps = 23/483 (4%) Query: 40 ASALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYD 99 A L+ D Q LA + R A G + + R D +P D Sbjct: 2 AKILIVDDELQLRQSFQRLLAGEGHDVRAASTGEQGI-KLVREELPELVIMDVRMP-GMD 59 Query: 100 GLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDV-FSDEELRLIAALAAGALS 158 GL + ++ A + + + + ++ + FD E+ I AL A+ Sbjct: 60 GLTALRAIREIDARLPVVIMTAYSTTET-AIEATKLGAFDYILKPFEIPDILALIEQAVE 118 Query: 159 NALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETG 218 A + + GD + ++G S M Q+ K I A +D VL+ GE+G Sbjct: 119 -AGRRMRARVDMVADGDDGTGQETLGEALVGTSRAMHQVYKAIGRAAPTDALVLVRGESG 177 Query: 219 TGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMA 278 TGKELVA+A+++ S R P + +NC A+P+++ ESELFG+ KGAFTGA + R GK E A Sbjct: 178 TGKELVARAVYQHSLRGEKPFLIINCVAIPDTLLESELFGYEKGAFTGATNRRVGKIEQA 237 Query: 279 DNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAG 338 + GT+FLDEIG++ L +QAKLLR+LQ I+R+G + + VDVR++AATN DL V G Sbjct: 238 NGGTVFLDEIGDMPLGIQAKLLRLLQEKQIERLGGRQPIPVDVRIIAATNTDLEAAVADG 297 Query: 339 RFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHY 398 RFR DL++RL V L +PPLRER +D+ LA YF + + ++ A L+ Sbjct: 298 RFREDLYYRLKVVTLWLPPLRERSEDIPPLARYFLARFSREMDMPNPGITPEALAYLEAQ 357 Query: 399 SFPGNVRELEHAIHRAVVLARATRSGDEVI---LEAQHFAFPEVTLPTPEVA-------- 447 +PGNVREL +++H+A+V +R G+ + LEA P P +++ Sbjct: 358 PWPGNVRELGNSVHKALVFSRGGPLGEPDLKQALEASRGVRPGSEGPACDLSLAADQTMQ 417 Query: 448 -------AVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRL 500 + + R +R+AL N AR+L L ++ Sbjct: 418 ELIRRTLSESDGDNVFDSLMDHVGRLVVREALHLTGGNRTRAARLLGLSRPTLLAKIEKY 477 Query: 501 GLK 503 GL+ Sbjct: 478 GLR 480 >UniRef50_C0QIQ0 Sigma-54 dependent DNA-binding response regulator (NtrC-type regulator) n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QIQ0_DESAH Length = 451 Score = 536 bits (1381), Expect = e-150, Method: Composition-based stats. Identities = 149/462 (32%), Positives = 220/462 (47%), Gaps = 16/462 (3%) Query: 41 SALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDG 100 + L+ D ++ + L+K G LE I + +D +LP DG Sbjct: 5 TILIVEDDQRMNQALLHILSKKGYAVESVDSGEKALERIRQT-RFDLVVSDLKLP-GMDG 62 Query: 101 LIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNA 160 + + + + + + + M+ D + Sbjct: 63 MEVLKAIKQYDRTILFVIITAYGTVDT-AVSAMKQGAEDYILK---PFDMEELRLVVEKT 118 Query: 161 LLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTG 220 L L N+ + ++G S M + K I V S VLI GETGTG Sbjct: 119 LEKRGLFLDNLRLQQQLE-KKYTFENIVGTSESMMGVFKTINRVKESRSTVLIRGETGTG 177 Query: 221 KELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADN 280 KELVA+AIH S RA+ P + +NCAAL E + SELFGHVKGAFTGA++++ G FE AD Sbjct: 178 KELVARAIHFNSARALKPYLPVNCAALNEDLMASELFGHVKGAFTGAVADKRGLFEAADG 237 Query: 281 GTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRF 340 GTLFLDEIG++ LQ LR L+ G+IQ VG + V VR++AATN++L V G F Sbjct: 238 GTLFLDEIGDVGQGLQQTFLRALEKGEIQPVGSFQRKIVSVRIIAATNKNLEAMVEQGGF 297 Query: 341 RADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSF 400 R DL++RL+V + +PPLR+R +D+ LLA +F + + + ++ A LL++YS+ Sbjct: 298 RKDLYYRLNVVTIDLPPLRQRKEDIGLLAAHFLTKYAAQNNKNIRGIAPRALRLLENYSW 357 Query: 401 PGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREAT 460 PGNVRELE+ I RA + + + + P P + Sbjct: 358 PGNVRELENIIERATLFELTQEITPDSLPQVVI---------EPCTVLDPSPFSMETTSL 408 Query: 461 EAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 EA R I + L +HN +++L D + L R+ RL L Sbjct: 409 EAVSRRHIVRILEMTNHNKTQASKLLGIDRSTLWRIMNRLKL 450 >UniRef50_C0GSE0 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GSE0_9DELT Length = 730 Score = 536 bits (1381), Expect = e-150, Method: Composition-based stats. Identities = 170/501 (33%), Positives = 252/501 (50%), Gaps = 32/501 (6%) Query: 6 DVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRY-DSRQFIPLAIDGLAKDVL 64 +A + + L+ +++++ C ++ +L + R + + + V Sbjct: 256 QTTCEVARNVSALSDMDEIGGYLMRRIKKIIHCPSNLILVFGPDRDVLFVITEKGTYPVS 315 Query: 65 GRRFALEGHPRLEAIARAGDVV-RFPADSELPDPYDGLIPGQESLKVHACVGLPLFAGQN 123 R+ A L+ + + R LP+ + E V +PL+ Sbjct: 316 DRQTAQSIDAALQNLQGVETIDGRVFESLPLPEGF----VLGEKQ-----VVVPLYYEDI 366 Query: 124 LIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVK 183 L GA+ + D S E + L+ + A+G + A+ L + + E+ Sbjct: 367 LCGAMLASCSSKCKCDSDSMELISLVLSHASGTIRRAI----LHQEEIKKLKQGVSESAG 422 Query: 184 QTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLN 243 MIG M + + I+ VA +D+ VLI GE+GTGKELVAKAIH S R NP V +N Sbjct: 423 FEGMIGRDYRMQTIYRLIQDVAPTDVTVLIQGESGTGKELVAKAIHARSSRRDNPFVVIN 482 Query: 244 CAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVL 303 C+A P ++ ESELFGH KGAFTGAI R G+FE A GT+FLDEI E+ L+ Q KLLRVL Sbjct: 483 CSAYPATLLESELFGHEKGAFTGAIRQRPGRFEQARGGTVFLDEIAEVDLSAQVKLLRVL 542 Query: 304 QYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGD 363 Q +R+G ++ + VDVR+LAATN+DL EEV AGRFR DL++RL V P+++PPLRERG+ Sbjct: 543 QTQKFERLGGEKSIEVDVRILAATNKDLLEEVKAGRFREDLYYRLDVVPINLPPLRERGN 602 Query: 364 DVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRS 423 D LLA +F E+ Q +S+ A L YS+PGNVRELE+ + +AVVL + Sbjct: 603 DTALLARHFLERFAAVQDKRINEISSSAMRALLDYSWPGNVRELENVMEQAVVLCKGETI 662 Query: 424 GDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACA 483 E + + A P R+ E ++ + + L N A Sbjct: 663 ALEDLPDKLQGARPAR-----------------RKTIEDQEKNLLLETLEACGWNKKMAA 705 Query: 484 RMLETDVANLHRLAKRLGLKD 504 L + L+ K+ G+ D Sbjct: 706 ERLGIGRSTLYAKLKKHGIMD 726 >UniRef50_Q1ILI0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1ILI0_ACIBL Length = 467 Score = 535 bits (1380), Expect = e-150, Method: Composition-based stats. Identities = 149/473 (31%), Positives = 222/473 (46%), Gaps = 9/473 (1%) Query: 29 ITTLRQVLECDASALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRF 88 +T + E + LL D + + +A+ + F E + I + V Sbjct: 1 MTVQQASTEANLLNLLIVDDERVVREGCRDVAQTLGFSTFTAENAEQAYKILDSTSVDVI 60 Query: 89 PADSELPDPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRL 148 D LP GL ++ + + + G + + + M+ FD + Sbjct: 61 LLDLRLP-GIGGLEALRQIKQRRPETIVIVVTGYATVQS-AVQAMKHGAFDYVTK---PF 115 Query: 149 IAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASD 208 L +L ++N + + M+G +P M +L + I A S Sbjct: 116 NMDELRILLDRVTGHLKLTTENRMLREQVKA-RHGFGGMVGRAPEMERLYRIITKAANST 174 Query: 209 LNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAI 268 VLI GE+GTGKE+VA+A+H P + ++C +L ++ ESELFG+VKGAFTGA Sbjct: 175 HPVLIMGESGTGKEVVARAVHYTGCYKDKPFIPVDCGSLVPTLIESELFGYVKGAFTGAQ 234 Query: 269 SNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATN 328 ++ G MAD GT+FLDEIGEL + LQ+KLLR LQ +I+ VG R + ++VR+LAATN Sbjct: 235 HSKQGLLAMADGGTVFLDEIGELPIDLQSKLLRALQEKEIRPVGGTRAVPINVRILAATN 294 Query: 329 RDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLS 388 RDL + V G FR DL+ RL+V L +PPLR+R D+ LL G+F E+ G +S Sbjct: 295 RDLEQAVQQGTFRRDLYFRLNVLTLRIPPLRDRKQDIPLLVGHFLERTERATGFQ-RNIS 353 Query: 389 AGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAA 448 A L+ Y +PGNVRELEH + RA L + V T Sbjct: 354 DEALKLMLTYDWPGNVRELEHCLDRACALTSGPTINTLDLPTTIQ--NWHVQTQTVLAPQ 411 Query: 449 VPVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLG 501 P N +++ I +A+ + H + AR+L L+R K G Sbjct: 412 APAAPTNGIVPIAEMEKQAILEAIERLHGDKLEAARLLGIGKTTLYRKLKEYG 464 >UniRef50_C1A7J8 Putative NtrC family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A7J8_GEMAT Length = 457 Score = 535 bits (1380), Expect = e-150, Method: Composition-based stats. Identities = 163/465 (35%), Positives = 233/465 (50%), Gaps = 15/465 (3%) Query: 38 CDASALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDP 97 L+ D L + R A G + + + D ++ Sbjct: 1 MTRRILVIDDEPGIRQALGQLLEYEGFDVRTASGGAEGI-TLYDSFRPQLVFLDVKMA-G 58 Query: 98 YDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGAL 157 DGL + + + + +G I ++ Q +D+ E L L Sbjct: 59 LDGLEVLKRLRQADPNATVVMISGHATIQT-AVEATQLGAYDIL---EKPLDTDRVLVLL 114 Query: 158 SNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGET 217 NA QL +N + +++G S G+ L + IE V + VLI+GE Sbjct: 115 RNAFTNRQLTEENDRLRETIESR----YEIVGRSFGIRSLLERIERVTGTPARVLITGEN 170 Query: 218 GTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEM 277 GTGKELVA+AIH S RA P + +NCAA+P + ESELFGH+KG+FTGAI++R+GKFE Sbjct: 171 GTGKELVARAIHRGSQRARKPFIEVNCAAIPSELIESELFGHMKGSFTGAIADRAGKFEQ 230 Query: 278 ADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLA 337 A GTLFLDEIG++S + QAK+LRVLQ G + R+G + ++VDVRVLAATN+DL EE+ A Sbjct: 231 AHGGTLFLDEIGDMSQSAQAKVLRVLQDGFVTRIGGSKPVQVDVRVLAATNKDLEEEIAA 290 Query: 338 GRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQH 397 GRFR DL++RL+V P++VP LRER +D+ LL +F +Q R GL +S A L Sbjct: 291 GRFREDLYYRLNVVPITVPALRERREDIPLLVRHFLQQFAERDGLPARSISDEALQRLSE 350 Query: 398 YSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLR 457 +PGNVREL + + R V+LA A I P + Sbjct: 351 LDWPGNVRELRNTMERLVILASAASISVADI-----DRLAGRRTAEPSGIGSLLDCNTFE 405 Query: 458 EATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 E +A +R + L N + AR L+ +NL++ +R L Sbjct: 406 EFKQAAERAFLLAKLRAFDWNVSETARALDMPRSNLYKKIERYAL 450 >UniRef50_Q893M0 Putative sigma-54 interacting protein n=1 Tax=Clostridium tetani RepID=Q893M0_CLOTE Length = 595 Score = 535 bits (1379), Expect = e-150, Method: Composition-based stats. Identities = 126/330 (38%), Positives = 196/330 (59%), Gaps = 7/330 (2%) Query: 175 DATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPR 234 + + + +MIG S M +L + IE VA ++N++++GE+GTGKELV +A+H R Sbjct: 272 NKLNNDKIGFKEMIGQSNSMKELYELIEKVADKNVNIMVTGESGTGKELVVRALHYGGER 331 Query: 235 AVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLA 294 NP V +NCAA+P+ + ESELFGH KGAFTGA R G+FE+A GTLFLDEIG++ L+ Sbjct: 332 RDNPFVKVNCAAMPKDILESELFGHEKGAFTGADKKRVGRFELAHKGTLFLDEIGDMDLS 391 Query: 295 LQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLS 354 +QAK LR++Q + +RVG ++ ++VDVR++ ATN+DL++EV GRFR DL++RL+ L Sbjct: 392 IQAKFLRIIQQQEFERVGGNKTIKVDVRIICATNKDLKKEVKEGRFREDLYYRLNTITLY 451 Query: 355 VPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRA 414 VPPLRER +D+ L +F ++ + +S + L Y +PGNVRELE+A+ RA Sbjct: 452 VPPLRERKEDIPFLIHHFLKEKGKKFDKIAPKISPEVFDALMEYDWPGNVRELENAMERA 511 Query: 415 VVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLRE-ATEAFQRETIRQALA 473 ++L + ++ + V + V +++E +RE I +AL Sbjct: 512 IILCG------KDLIRLNNLPISIVKNNKEFDESKHVTPIDIKEITIRNMEREIIIEALE 565 Query: 474 QNHHNWAACARMLETDVANLHRLAKRLGLK 503 + N ++ L L+ K ++ Sbjct: 566 KCDWNRTKTSKSLGISRRTLYNKMKEFNIR 595 >UniRef50_P05407 Nif-specific regulatory protein n=11 Tax=Rhizobiales RepID=NIFA_BRAJA Length = 582 Score = 535 bits (1379), Expect = e-150, Method: Composition-based stats. Identities = 170/551 (30%), Positives = 253/551 (45%), Gaps = 51/551 (9%) Query: 3 FSVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQF-IPLAIDGLAK 61 ++ + I+ L + ++ L+ ++ + ++ G ++ Sbjct: 29 SALAGIYEISKILNAPGRLEVTLANVLGLLQSFVQMRHGLVSLFNDDGVPELTVGAGWSE 88 Query: 62 DVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDP--YDGLIPGQESLKVHACVGLPLF 119 R + I G + + D + G A +G+P+ Sbjct: 89 GTDERYRTCVPQKAIHEIVATGRSLMVENVAAETAFSAADREVLGASDSIPVAFIGVPIR 148 Query: 120 AGQNLIGALTLDGMQPDQFDVF--SDEELRLIAALAAGALSNALLIEQLESQNMLPGDAT 177 ++G LT+D + + L ++A + + L Q+++ D Sbjct: 149 VDSTVVGTLTIDRIPEGSSSLLEYDARLLAMVANVIGQTIKLHRLFAGDREQSLVDKDRL 208 Query: 178 PFE------------AVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVA 225 + ++ +IG SP ++ L ++I +VA S+ VL+ GE+GTGKELVA Sbjct: 209 EKQTVDRGPPARERKQLQAHGIIGDSPALSALLEKIVVVARSNSTVLLRGESGTGKELVA 268 Query: 226 KAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFL 285 KAIHE+S RA P V LNCAALPE+V ESELFGH KGAFTGA+S R G+FE+AD GTLFL Sbjct: 269 KAIHESSVRAKRPFVKLNCAALPETVLESELFGHEKGAFTGAVSARKGRFELADKGTLFL 328 Query: 286 DEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLF 345 DEIGE+S QAKLLRVLQ + +RVG + ++VDVRV+AATNR+L E V FRADL+ Sbjct: 329 DEIGEISPPFQAKLLRVLQEQEFERVGSNHTIKVDVRVIAATNRNLEEAVARSEFRADLY 388 Query: 346 HRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVR 405 +R+SV PL +PPLRER D+ LLA F + G S + L A A ++L FPGNVR Sbjct: 389 YRISVVPLLLPPLRERRSDIPLLAREFLRKFNSENGRS-LTLEASAIDVLMSCKFPGNVR 447 Query: 406 ELEHAIHRAVVLARATRSGDEVI----------------------LEAQHFAFPEVTLPT 443 ELE+ I R L+ T A P ++ Sbjct: 448 ELENCIERTATLSAGTSIVRSDFACSQGQCLSTTLWKSTSYGKTDPAAPMQPVPAKSIIP 507 Query: 444 PEVAAVPVVKQNLREATE-----------AFQRETIRQALAQNHHNWAACARMLETDVAN 492 A P + RE + A+ ++ A AR+L Sbjct: 508 LAETAPPPQAVCEPGSLAPSGTVLVSGARMADRERVVAAMEKSGWVQAKAARLLGLTPRQ 567 Query: 493 LHRLAKRLGLK 503 + ++ G++ Sbjct: 568 VGYALRKYGIE 578 >UniRef50_P30667 Nif-specific regulatory protein n=6 Tax=Bacteria RepID=NIFA_AZOBR Length = 625 Score = 535 bits (1379), Expect = e-150, Method: Composition-based stats. Identities = 145/437 (33%), Positives = 224/437 (51%), Gaps = 12/437 (2%) Query: 2 SFSVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASAL-LRYDSRQFIPLAIDGLA 60 + + + ++ L + Q + ++ L L+ + L + +A +GL+ Sbjct: 11 NLELLTIYEVSKILGSSLDLQQTLREVLRALAYQLQMHRGRVYLVGEDNVLRLVAANGLS 70 Query: 61 KDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLK-VHACVGLPLF 119 + + +G I + G P +E P + ++ + V + VG+P+ Sbjct: 71 NEAAAQIEFRDGEGITGRILKTGMPAVVPNLAEEPLFLNRTGGREDLDEQVASLVGVPIK 130 Query: 120 AGQNLIGALTLDGMQ----PDQFDVFSDEELRLIAALAAGALSN----ALLIEQLESQNM 171 A ++G LT+D + F L ++A L + A + + Sbjct: 131 AAGVVVGVLTIDRISDEGPQGHFG-SDVRFLTMVANLIGQTVRLHRTVAEERRFMMRETF 189 Query: 172 LPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEA 231 A ++ SP M ++ ++ VA VLI GE+GTGKEL+A+AIH Sbjct: 190 RMQKELRPVAAPINDVVCTSPNMLEVMAQVHRVAPFKSTVLIRGESGTGKELIARAIHNM 249 Query: 232 SPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGEL 291 SPR P + +NCAALPES+ ESELFGH KGAFTGA + G+FE+A GTLFLDEIG++ Sbjct: 250 SPRKDAPFIRVNCAALPESLLESELFGHEKGAFTGAQKDHKGRFELASGGTLFLDEIGDI 309 Query: 292 SLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVF 351 S QAKLLRVLQ + +RVG + ++ DVR++ ATN +L E V G+FRADL+ R++V Sbjct: 310 SPNFQAKLLRVLQEQEFERVGGSKTIKTDVRLICATNLNLEEAVGHGKFRADLYFRINVV 369 Query: 352 PLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAI 411 + +PPLRER D+ LA +F + G++ V + A +L ++PGNVRELE+ I Sbjct: 370 TIHLPPLRERRQDIGPLARHFVAKFAKDNGMALV-MEDEALEVLNRCTWPGNVRELENCI 428 Query: 412 HRAVVLARATRSGDEVI 428 RA +R E + Sbjct: 429 ERAATQSRDGIIRTESL 445 Score = 53.1 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 6/49 (12%), Positives = 18/49 (36%), Gaps = 4/49 (8%) Query: 459 ATEAFQ----RETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 + + R+ + A+ + A AR+L + ++ ++ Sbjct: 573 PLDEPESGSLRDRLLWAMERTGWVQAKAARLLGMTTRQVSYALRKYNIE 621 >UniRef50_B5JMF6 Sigma-54 interaction domain family n=2 Tax=Verrucomicrobia RepID=B5JMF6_9BACT Length = 518 Score = 535 bits (1378), Expect = e-150, Method: Composition-based stats. Identities = 154/519 (29%), Positives = 224/519 (43%), Gaps = 68/519 (13%) Query: 38 CDASALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAI---ARAGDVVRFPADSEL 94 +L D I A L + + +RF++ L + D L Sbjct: 1 MSLERILILDDELVIRKA---LEEQLRRKRFSVCSVGTLSEADEHLSKDEYDLLFVDVHL 57 Query: 95 PDPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAA 154 PD +G + + + + G + + + MQ FD ++ Sbjct: 58 PDG-NGTELLERVSSMQNPPLVVIITGYGTVES-AVKCMQAGAFDYIIK---PFSSSQID 112 Query: 155 GALSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLIS 214 + A QL N + ++IG S + QLK I VA ++ VLI Sbjct: 113 VLIKKARDYRQLVRVNQFLASESTVS----GELIGKSGFINQLKDVIRKVAPTEATVLIC 168 Query: 215 GETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGK 274 GE GTGKELVA ++ S R P + +NCAA+ ES+ ESE FGH KGA+TGA R G+ Sbjct: 169 GENGTGKELVANELYRCSARKSAPFIRVNCAAISESLIESEFFGHEKGAYTGATQRREGR 228 Query: 275 FEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREE 334 FE+AD GT+ LDEI E+S +QAKLLRVLQ + +RVG ++ ++VDVRV+A TNR+L + Sbjct: 229 FELADGGTILLDEISEISPKVQAKLLRVLQEREFERVGGNKTIKVDVRVIATTNRNLAQS 288 Query: 335 VLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNL 394 V G FR DL++RL+VFP+ VPPLR+R DV+LLA F + + G + A Sbjct: 289 VERGMFRQDLYYRLNVFPIQVPPLRDRDGDVVLLAKNFAQSFGRKHGKQIKGFAPEAVEA 348 Query: 395 LQHYSFPGNVRELEHAIHRAVVLAR-ATRSGDEVI-----------LEAQHF-------- 434 L+ + +PGNVREL++ + RAV+LA + A H Sbjct: 349 LERHPWPGNVRELQNTVERAVILAESGQPIAQGHLGLFAMPTNVMAPPAGHPYPPVEAAG 408 Query: 435 ---------------------AFPEVTLPTPEVAAVPVVKQNLREA------------TE 461 P P P +VP Q + E Sbjct: 409 AAYGGGYPPQSAPPPVNGGFYEAPPAMPPQPVSQSVPAASQPSSASGSETTTVAPPLPLE 468 Query: 462 AFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRL 500 +++ I L N A++L + L Sbjct: 469 EIEKKHILATLETTDGNRTQAAKLLGISIRTLRNKISAY 507 >UniRef50_Q1IRB0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IRB0_ACIBL Length = 458 Score = 535 bits (1378), Expect = e-150, Method: Composition-based stats. Identities = 161/461 (34%), Positives = 241/461 (52%), Gaps = 7/461 (1%) Query: 42 ALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGL 101 LL D + L + + + L +A+ D +LP G+ Sbjct: 4 ILLVEDKADLREMLTTALQRMGYAVLPSANVNEALVDLAK-QRFSAVLTDLKLP-GGSGM 61 Query: 102 IPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNAL 161 +L V + + I A ++ M+ FD + L A+ Sbjct: 62 DVLSAALDSDPMVPVVVMTAFGTI-ADAVEAMRAGAFDFIQK---PIDLTHLKLLLERAV 117 Query: 162 LIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGK 221 ++L N++ + + ++IG P M +E++ +A SD VL+ GE+GTGK Sbjct: 118 ERQRLMRDNVVLREE-YARKMGFPRIIGEHPTMQNSAREMQRIAGSDSTVLLLGESGTGK 176 Query: 222 ELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNG 281 EL A+AIH+ S R+ P V LNCAA+PE + E+ELFGH KGAFTGA + +SGKFEMA+ G Sbjct: 177 ELFARAIHQLSIRSTQPFVALNCAAMPEGLIENELFGHEKGAFTGANTRKSGKFEMANRG 236 Query: 282 TLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFR 341 T+FLDEIGEL L LQ+KLLRVL+ ++R+G L++DVRV+AATNR+L + V AG FR Sbjct: 237 TIFLDEIGELPLNLQSKLLRVLEEHVVERLGSTMPLQLDVRVVAATNRELEQAVEAGAFR 296 Query: 342 ADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFP 401 DL++RL+VFP+ +PPLRERG+DVIL+A +F R R+ L+ A L+ + +P Sbjct: 297 RDLYYRLAVFPIRIPPLRERGEDVILIAEHFLAHFRQELKKPRLSLAPDALAALRAHLWP 356 Query: 402 GNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATE 461 GNVREL++ I RA +L + ++ L A + V+L + + + +A+ Sbjct: 357 GNVRELQNTIERAAILHDTEVTAADLGLSANLRSAAAVSLGEHSIDMGGSLPEVSAQASR 416 Query: 462 AFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 ++ I L + N +A A L L GL Sbjct: 417 TIEKAKIEATLRECKWNKSAAAERLGISYKTLLTKIHGYGL 457 >UniRef50_Q2RXL4 Transcriptional regulator, NifA subfamily, Fis family n=6 Tax=Proteobacteria RepID=Q2RXL4_RHORT Length = 733 Score = 535 bits (1378), Expect = e-150, Method: Composition-based stats. Identities = 166/539 (30%), Positives = 255/539 (47%), Gaps = 44/539 (8%) Query: 6 DVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAI-----DGLA 60 +L + + + +D + ++ + D +L D + GL Sbjct: 188 HILVEVTNAVISKLKLEDLVDEVSRSIHRFFGVDFVSLDLVDPATATIKSRSVYFQKGLG 247 Query: 61 KDVLGRRFALEGHPRLEAIARAGDVVRFP--ADSELPDPYDGLIPGQESLKVHACVGLPL 118 V G G + + L +D + + G+PL Sbjct: 248 P-VWGSAQGPLGASPMAPLFETKAPRILARADLGALARGHDQMTLLTNA-GFQVACGIPL 305 Query: 119 FAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNA-------LLIEQLESQNM 171 + +++G LTL + D+F ++ L +A+ A+ NA L +QL +N Sbjct: 306 LSAGHVLGVLTLASRERDKFTDYNIGLLGEVASRICIAVENALAYGEISRLKDQLSRENK 365 Query: 172 LPG------DATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVA 225 + +IG+SP + + +++E+VA SD VLI GETGTGKEL+A Sbjct: 366 QLAKERYYLEEEIRRTEDFGDIIGISPAIRGVLEQVELVADSDSTVLILGETGTGKELIA 425 Query: 226 KAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFL 285 +AIH S R ++ +NCAA+P ++ ES+LFGH KGAFTGAI+ +SG+FE+AD GTLFL Sbjct: 426 RAIHMLSQRKKRTMIKVNCAAIPSALLESDLFGHEKGAFTGAIAQKSGRFELADRGTLFL 485 Query: 286 DEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLF 345 DE+G++ + LQ KLLR LQ +I+RVG + + VDVR++AATNRDL V FR DL+ Sbjct: 486 DEVGDIPIDLQPKLLRALQEREIERVGGHQPIPVDVRMIAATNRDLTGMVEKRLFRGDLY 545 Query: 346 HRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVR 405 +RL+VFP+ +PPLRER +D+ L+A YF + + + SA ++L + +PGNVR Sbjct: 546 YRLNVFPILIPPLRERREDIPLMADYFMRKTARKMNRAIEAFSAETMDMLLNLPWPGNVR 605 Query: 406 ELEHAIHRAVVLARATRS-------------------GDEVILEAQHFAFPEVTLPTPEV 446 EL++ I RAV+L + D VI + P P Sbjct: 606 ELQNVIERAVILTKGPVLHLPATELRHHLAPSAALPSEDAVIPLRAAVLPSAASAPDPLP 665 Query: 447 AAVPVVKQNLREATEAFQRETIRQALAQNHHNWA---ACARMLETDVANLHRLAKRLGL 502 A EA +R+ I + L + + A L L +RLG+ Sbjct: 666 PPAGSSPNPGDLAGEAIERDQILRVLRETNGIVGGPRGAAAHLGMKRTTLLSRMRRLGI 724 >UniRef50_P28787 Nitrogen regulation protein NR(I) n=29 Tax=Gammaproteobacteria RepID=NTRC_PROVU Length = 473 Score = 534 bits (1376), Expect = e-150, Method: Composition-based stats. Identities = 145/482 (30%), Positives = 230/482 (47%), Gaps = 25/482 (5%) Query: 38 CDASALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDP 97 + D I ++ A E + + +D +PD Sbjct: 1 MQKGNVWVVDDDSSIRWVLERAITREGMLCRAFEHANDVLKALNSEQPDVLLSDIRMPD- 59 Query: 98 YDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDE-ELRLIAALAAGA 156 DGL + + + + + + + + A ++ Q FD ++ AL A Sbjct: 60 MDGLSLLKIIKEQYPTLPVIIMTAHSDLDA-AVNAYQQGAFDYLPKPFDIDETLALIERA 118 Query: 157 LSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGE 216 +++ +Q + + + MIG +P M ++ + I ++ S ++VLI+GE Sbjct: 119 ITHYREQKQPNNAENILQ--------SVSDMIGEAPAMQEVYRIIGRLSRSSISVLINGE 170 Query: 217 TGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFE 276 +GTGKELVA A+H SPRA+ P + LN AA+P+ + ESELFGH KGAFTGA R G+FE Sbjct: 171 SGTGKELVAHALHRHSPRALAPFIALNMAAIPKDLIESELFGHEKGAFTGASQVRQGRFE 230 Query: 277 MADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVL 336 A+ G+LFLDEIG++ L +Q +LLRVL G RVG ++VDVR++AAT++DL + V Sbjct: 231 QANGGSLFLDEIGDMPLDIQTRLLRVLAEGQFYRVGGYAPVKVDVRIIAATHQDLEKRVN 290 Query: 337 AGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQ 396 G FR DL+HRL+V + +PPLR+R +D+ LA YF ++ G+ L + + Sbjct: 291 EGDFREDLYHRLNVIRIQLPPLRDRTEDIPSLARYFLQKTAKELGVETKSLHEQSLKTMM 350 Query: 397 HYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPT------------- 443 Y + GNVR+LE+ V+ + + + A + Sbjct: 351 EYVWSGNVRQLENVCRWLTVMTASQEIMPQDLPSEIRLADEKAKNINRLTSQHWSQHLSL 410 Query: 444 -PEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 + A + L +A F+R + ALA + AR+L L R K LG+ Sbjct: 411 WADEALGEGKENILNDALPQFERTLLLSALAYTQGHKQDAARLLGWGRNTLTRKLKELGI 470 Query: 503 KD 504 +D Sbjct: 471 ED 472 >UniRef50_B5EFV3 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Geobacter RepID=B5EFV3_GEOBB Length = 482 Score = 534 bits (1376), Expect = e-150, Method: Composition-based stats. Identities = 145/484 (29%), Positives = 221/484 (45%), Gaps = 25/484 (5%) Query: 38 CDASALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDP 97 A L+ D + + A + + L+ + + D LP Sbjct: 1 MTAKLLILDDDHDILLMLKSVFAGEDYELLLESDSEGALKRVI-SDRPNVAIMDISLPQ- 58 Query: 98 YDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGAL 157 G+ +E+ K+ + + + G ++ M+ FD + GA+ Sbjct: 59 KSGIEVLKEAKKIDPGLAVIMATGYKTTQN-AIEAMKHGAFDYVTK---PFDMTKLKGAV 114 Query: 158 SNALLIEQLESQNMLPGDATPFEAVKQTQ-MIGLSPGMTQLKKEIEIVAASDLNVLISGE 216 AL L + + E MIG SP M ++ K + VA SD VLI GE Sbjct: 115 KKALECNLLSRKVRYTRERPQVEEDLTEDLMIGSSPEMIEIWKMVGTVADSDATVLIQGE 174 Query: 217 TGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFE 276 +GTGKEL+A+A++ S R P + +NCAALPE++ ESELFGH KGAFT A S R GKFE Sbjct: 175 SGTGKELLARAVYNNSKRKNRPFLAVNCAALPEALLESELFGHEKGAFTDAHSRRIGKFE 234 Query: 277 MADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVL 336 + GT+FLDEIGE+S A Q K LRVL+ + +RVG + ++VDVRV+AATN+ L V Sbjct: 235 QCNGGTIFLDEIGEMSQANQGKFLRVLENQEFERVGGNETIKVDVRVIAATNKSLITNVK 294 Query: 337 AGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQ 396 FR DL++RL V +PPLR+R +D+ LL F ++ + G + ++ +L Sbjct: 295 EKTFRMDLYYRLRVVNFFLPPLRDRAEDIPLLVELFVKKFSKKYGKNIKAVAPETLAMLT 354 Query: 397 HYSFPGNVRELEHAIHRAVVLARATRSGDEVILE--AQHFAFPEVTLPTPEVAAVPVVKQ 454 + + GN+REL++ I+ A V R F EV L V Sbjct: 355 SHPWEGNIRELKNVINSATVFCRGDILVPGDFESFLTAKAGFKEVDLEAAGDDYYEVFWS 414 Query: 455 NLREATE----------------AFQRETIRQALAQNHHNWAACARMLETDVANLHRLAK 498 L + ++ I A+ ++++N A++L L + Sbjct: 415 MLEPVFDGICQKNKGAIYESVNMGLEKALIHMAMEKSNNNQVFAAKLLGISRNTLRDRLE 474 Query: 499 RLGL 502 R + Sbjct: 475 RYRI 478 >UniRef50_B0VES5 Putative uncharacterized protein n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VES5_9BACT Length = 1454 Score = 533 bits (1375), Expect = e-150, Method: Composition-based stats. Identities = 153/506 (30%), Positives = 245/506 (48%), Gaps = 33/506 (6%) Query: 5 VDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQF----IPLAIDGLA 60 ++ I L ++ +++L ++ D LL + + + Sbjct: 969 LNQFYEITQNLNTITDLDVLIEQSLSSLVEIANADGGMLLLHPNPSLPDAWEYRIYHNFS 1028 Query: 61 KDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFA 120 + + + + + P + + + LPL Sbjct: 1029 PEDKYHDQFQN---ICYEVYQNNK----LENIKQPHF---------APSYNNILALPLSI 1072 Query: 121 GQNLIGALTLDGMQPDQFDVFSDEELRLIAAL---AAGALSNALLIEQLESQNMLPGDAT 177 +N +G + L + FS+ + L++AL + N +L LE + + + Sbjct: 1073 RKNTMGVVLLFC-KSGS-KYFSERIINLLSALSNQIIVIIEN-ILSANLEKSHNIIREQL 1129 Query: 178 PFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVN 237 + + +IG SP M ++ + IE V + VL+ G +GTGKEL+A+A+H +S R Sbjct: 1130 SSNNI-YSNIIGKSPEMMKIFEIIEKVKDTPTTVLLEGPSGTGKELIARALHYSSNRRNK 1188 Query: 238 PLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQA 297 V C ALPE++ ESELFGHVKG+FTGA ++ G FE+AD GT FLDEI ++S + Q+ Sbjct: 1189 AFVAQYCGALPETLLESELFGHVKGSFTGAAYDKKGLFEIADGGTFFLDEISDISQSTQS 1248 Query: 298 KLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPP 357 KLLR LQ G+I+RVG + +VDVRV+ ATN L E V +G FR DL++RL+V + VPP Sbjct: 1249 KLLRFLQEGEIKRVGATKTEKVDVRVVCATNTPLMERVKSGEFRLDLYYRLNVIRIDVPP 1308 Query: 358 LRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVL 417 L+ R D+ LLA +F ++ R + + +A A +L+ Y +PGNVR+LE+ I RAV L Sbjct: 1309 LKNRTGDIPLLAIHFLDKYNKRMNKNVMGFTAEAMKVLEQYDWPGNVRQLENEIERAVTL 1368 Query: 418 ARATR-SGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNH 476 A E + + A+ K+NL++A E +R+ I Q+L + Sbjct: 1369 AEPNTFIKPSDFSEEVYRHIEY-----SKTIAMLSGKKNLKDAIEELERKLISQSLEKFQ 1423 Query: 477 HNWAACARMLETDVANLHRLAKRLGL 502 N A+ L L + +R L Sbjct: 1424 WNQTQAAKELGLSRQGLIKKMQRYNL 1449 >UniRef50_Q1ITP4 Two component, sigma54 specific, transcriptional regulator, Fis family n=8 Tax=Bacteria RepID=Q1ITP4_ACIBL Length = 485 Score = 533 bits (1375), Expect = e-150, Method: Composition-based stats. Identities = 150/473 (31%), Positives = 234/473 (49%), Gaps = 19/473 (4%) Query: 43 LLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLI 102 +L D + + ++ ++ + +AR D LPD GL Sbjct: 6 ILIVDDERLVRWSLRQKCEEWGYHVIEADNGSAGLRLARHESPDLVLLDVRLPD-MGGLE 64 Query: 103 PGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALL 162 ++ + + + + + L ++ +D L + A+ NAL Sbjct: 65 ILKQLKENGDARAVIMITADPQLEDVKL-ALKLGAYDFVGK---PLDFDELSVAVKNALE 120 Query: 163 IEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLN-VLISGETGTGK 221 +L ++ ++G+S MT+L + +A S+ +L+ GE+GTGK Sbjct: 121 TTRLRTEVESLRGEVRR-RHGYHDIVGVSQKMTELMVFVAKIATSEATTILVQGESGTGK 179 Query: 222 ELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNG 281 +LVAKAIH S R P V +NC+A+PE++ E+ELFGH KGAFT A + + G FE AD G Sbjct: 180 DLVAKAIHYQSRRQEKPFVAINCSAIPETLMEAELFGHEKGAFTDAKAMKKGLFEAADGG 239 Query: 282 TLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFR 341 TLFLDEIGELS LQAKLLRVL+ I+RVG R ++VDVRV+AA+NRDL + V G FR Sbjct: 240 TLFLDEIGELSPLLQAKLLRVLEDQVIRRVGGVRDMQVDVRVIAASNRDLEKMVRDGTFR 299 Query: 342 ADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFP 401 DL++RL++ + +PPLR+R +D++ L +F E+ + S ++ R LL + +P Sbjct: 300 QDLYYRLAIISVFLPPLRDRKEDILPLVEFFIERYNRKFKKSIRGVTDNTRRLLMKHDWP 359 Query: 402 GNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQN------ 455 GNVREL++AI RA++L A + + A T P+ + Sbjct: 360 GNVRELKNAIERAMILDEAENLRPDYLPFAVAQQQAMYTAFESASPPAPIQQLPNGRSLP 419 Query: 456 ------LREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 + E +R + A+ + + N AR+L+ L K+ GL Sbjct: 420 RLVIPEGGTSLEEVERAFVEMAMKEANGNQTHAARLLDISRDALRYKLKKFGL 472 >UniRef50_Q023H8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q023H8_SOLUE Length = 465 Score = 533 bits (1374), Expect = e-150, Method: Composition-based stats. Identities = 143/459 (31%), Positives = 224/459 (48%), Gaps = 13/459 (2%) Query: 42 ALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGL 101 L+ D + L ++ A AI D LP GL Sbjct: 6 ILIVEDDDSLRKVMHVQLEREGYETSSASTAEEAF-AILDKASQSLVMTDLHLP-GMSGL 63 Query: 102 IPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNAL 161 ++ + + + I ++ M+ +D + + L Sbjct: 64 ELLKKVRLDYPETAVIVMTAFGTIQT-AVEAMKAGAYDFLTKPIHPY---ELKMLVRRCL 119 Query: 162 LIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGK 221 +L + + A E ++G S + + VA++D +LI GETGTGK Sbjct: 120 EHHRLIEEVQVLRTAL-DEKYGFEAIVGSSSQLMRALDVAARVASTDATILIYGETGTGK 178 Query: 222 ELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNG 281 ELVAKAIH S R P + +NC A+P+ + ESELFGHVKG+FTGA++++ GK EMAD G Sbjct: 179 ELVAKAIHLRSSRRDRPFITINCGAIPKELLESELFGHVKGSFTGALTHKKGKVEMADGG 238 Query: 282 TLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFR 341 T+ LDEIGE+ L LQ ++LR++Q +I++VG +VDVR++AAT+R+L V AG FR Sbjct: 239 TVLLDEIGEMPLELQVRILRLIQEREIEKVGATSPTKVDVRIVAATHRELAGMVKAGTFR 298 Query: 342 ADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFP 401 DL++RL V P+++PPLRER D+++L +F E+CR++ +++S +YS+P Sbjct: 299 EDLYYRLLVVPINLPPLRERTGDILILVQHFLEKCRMKHSRPNLMMSTDLLPYFTNYSWP 358 Query: 402 GNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATE 461 GNVR+LE+A+ R V+LAR + + + A P P + E Sbjct: 359 GNVRQLENAVERLVLLARDSTINASDLPDFLSAAPAPPPEPVPVALPEGGIN------LE 412 Query: 462 AFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRL 500 +++ I QAL + N A+ L ++ Sbjct: 413 DLEKDLILQALKKYAGNQTRAAQYLNMSRRAFAYRLEKY 451 >UniRef50_B3EAH2 Two component, sigma54 specific, transcriptional regulator, Fis family n=7 Tax=Desulfuromonadales RepID=B3EAH2_GEOLS Length = 472 Score = 533 bits (1374), Expect = e-150, Method: Composition-based stats. Identities = 151/471 (32%), Positives = 236/471 (50%), Gaps = 11/471 (2%) Query: 36 LECDASALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELP 95 ++ L+ D L + GH LE I + D ++P Sbjct: 1 MDAVKKLLVIDDEPAIREGVRRILESESFQVETFANGHAALERI-KQEPFDLVVTDLKMP 59 Query: 96 DPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAG 155 G+ + ++ + + G + + + ++ M+ D + Sbjct: 60 -GISGMEVLKAIKEIQPDLPVIFITGYSSVDS-AVEVMKLGAVDYIAKPFTP---EEMLS 114 Query: 156 ALSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISG 215 + AL ++ ++ + + +G S M ++ + I VA +D VLI+G Sbjct: 115 TIRLALEQRVVDLGDLYLLKELR-DGEGFDRFVGKSHEMVKVYRRIMQVAPTDSTVLITG 173 Query: 216 ETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKF 275 E+GTGKELVA+AIH+ S R +P V ++C +L E++ ESELFGHVKG+FTGA+ ++G F Sbjct: 174 ESGTGKELVARAIHKHSQRRDHPFVAVDCTSLVENLLESELFGHVKGSFTGAMHTKTGLF 233 Query: 276 EMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEV 335 ++A+ GTLFLDE+ LSL QAKLLRVLQ ++ +G + +++R++AATNR LRE V Sbjct: 234 KVAEGGTLFLDEVSNLSLTTQAKLLRVLQEREVTPIGGTQPTPINIRLVAATNRSLREMV 293 Query: 336 LAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLL 395 G FR DLF RL++ P+ +PPLRER D+ LL G+ G ++AGA +L Sbjct: 294 AEGTFREDLFFRLNIIPMDLPPLRERTGDIPLLVGHTVRTVAEEVGKDIKGVTAGAMQVL 353 Query: 396 QHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQN 455 Q YSFPGNVRELE+ I RAVVLA + + + + + T +V +K+ Sbjct: 354 QSYSFPGNVRELENIIERAVVLAEDSLITPDDLELNHAASPTVLLDYTAVPLSVEELKET 413 Query: 456 LR----EATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 R +A E ++ + AL +N N A N + K+LG+ Sbjct: 414 KRHLREQAVEDIEKAFVVNALQRNRGNITRAAEETGMLRPNFQAMMKKLGI 464 >UniRef50_B1ZMV8 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Verrucomicrobia RepID=B1ZMV8_OPITP Length = 467 Score = 533 bits (1374), Expect = e-150, Method: Composition-based stats. Identities = 147/464 (31%), Positives = 226/464 (48%), Gaps = 12/464 (2%) Query: 42 ALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGL 101 ++L D + + D A + A D +P GL Sbjct: 4 SVLIVDDEKHTREGLQQALVDSYDVSLAASADEAFN-LMDAQPFDVIVTDLRMP-GKSGL 61 Query: 102 IPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNAL 161 ++L + + I ++ M+ D + + + AL Sbjct: 62 KVIDKALAQPNRPAVLMMTAYGNIET-AVEAMKRGAVDFLTK---PVNIERLEVLIQRAL 117 Query: 162 LIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGK 221 + LE + + E +IG SP + ++ +++VA S +LI GE+GTGK Sbjct: 118 KAKTLEVEVKQLHERL-DEKFSFEGIIGNSPKLHEVIDRVKLVAPSRATILIEGESGTGK 176 Query: 222 ELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNG 281 EL+A+AIH++S R+ P + ++CAAL E++ ESELFGH +G+FTGA R G+FE AD G Sbjct: 177 ELIAQAIHQSSSRSRGPFLAVHCAALSENLLESELFGHERGSFTGATERRIGRFESADGG 236 Query: 282 TLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFR 341 TLFLDEIGE+S + Q KLLR L+ I+RVG + + +DVR++AATNR L + V G+FR Sbjct: 237 TLFLDEIGEISASTQVKLLRFLETKSIERVGGSKPIDLDVRLVAATNRTLEQLVRDGKFR 296 Query: 342 ADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFP 401 DLF RL+V +++PPLRER +DV LL G++ G+ + + GA LQ Y +P Sbjct: 297 EDLFFRLNVVRITMPPLRERAEDVPLLLGHYITAFSEENGVPPLTIEPGALATLQAYPWP 356 Query: 402 GNVRELEHAIHRAVVLARATRSGDEVILEAQH---FAFPEVTLPTPEVAAVPVVKQNLRE 458 GN+REL + AVVL R + + A PTP V+ + Sbjct: 357 GNIRELRNFCENAVVLRRGRSLSEYDLEPRYRDATLAGATGPAPTPGAPGSTVLGGAVPT 416 Query: 459 --ATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRL 500 + E ++ +R+AL ++ N A ++ LHR + Sbjct: 417 SFSVEENEKRLLREALIKSRGNRTKAAELMGISRRTLHRKIAQW 460 >UniRef50_Q53206 Nif-specific regulatory protein n=5 Tax=Alphaproteobacteria RepID=NIFA_RHISN Length = 594 Score = 532 bits (1371), Expect = e-149, Method: Composition-based stats. Identities = 168/536 (31%), Positives = 247/536 (46%), Gaps = 42/536 (7%) Query: 8 LANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRY-DSRQFIPLAIDGLAKDVLGR 66 L I+ L + + +I TL +L A++ + A G+ G Sbjct: 57 LYRISKVLITSASLEIKLANVINTLPALLPMRRGAIVVVGAEGEPETTATFGVEPPSSGA 116 Query: 67 RFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFAGQNLIG 126 R + ++ I G + P + D L +G+P+ A Q +G Sbjct: 117 RH-IAAKAAIDRIVAKGAPLVVPDTCKSELFQDELQSIVSGTGQVTFIGVPMKADQETLG 175 Query: 127 ALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNML-------------- 172 L +D + EE ++ A + A+ + ES++ Sbjct: 176 TLWIDRAKDGAATRTQFEEEVRFLSMVANLAARAVRLNGHESRDSRPIGEEGDRKISGGD 235 Query: 173 --PGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHE 230 + T + ++G SP + Q+ + +++VA ++ VL+ GE+GTGKE AKAIHE Sbjct: 236 KELPEPTRQRPTRIDWIVGESPALRQVVESVKVVAQTNSAVLLRGESGTGKEFFAKAIHE 295 Query: 231 ASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGE 290 SPR P V LNCAAL V ESELFGH KGAFTGAIS R+G+FE+AD GTL LDEIGE Sbjct: 296 LSPRRKKPFVKLNCAALSAGVLESELFGHEKGAFTGAISQRAGRFELADGGTLLLDEIGE 355 Query: 291 LSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSV 350 +S A QAKLLRVLQ G+++RVG + L+VDVR++ ATN+DL V G FRADL++R++V Sbjct: 356 ISPAFQAKLLRVLQEGELERVGGTKTLKVDVRLICATNKDLETAVAEGEFRADLYYRINV 415 Query: 351 FPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHA 410 PL +PPLRER D+ LA F ++ + + + A +L FPGNVRELE+ Sbjct: 416 VPLFLPPLRERNGDIPRLAKVFLDRFNRENNRN-LEFTPAALEILSRCKFPGNVRELENC 474 Query: 411 IHRAVVLARATRSGDEVILEAQH-----------------------FAFPEVTLPTPEVA 447 + R LAR+ + + +P Sbjct: 475 VRRTATLARSATIVPSDFSCQNDQCFSSMLGKTADRPLGSHSLNGLAMSKRLPVESPASL 534 Query: 448 AVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 P L A RE + A+ + A AR+L + +R ++ Sbjct: 535 GYPAGPGGLTVAPHLSDRELLISAMEKAGWVQAKAARILGLTPRQVGYALRRHHIQ 590 >UniRef50_A9ET26 Transcriptional regulator n=2 Tax=Myxococcales RepID=A9ET26_SORC5 Length = 648 Score = 532 bits (1371), Expect = e-149, Method: Composition-based stats. Identities = 169/518 (32%), Positives = 261/518 (50%), Gaps = 42/518 (8%) Query: 5 VDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYD----------------- 47 V L + +L + + ++ + ++ D LL + Sbjct: 131 VRKLFAFSEKLINRRSVDELLEAMLDDVIELTHADKGFLLLLEGAEAAADTAVNGGAPAA 190 Query: 48 -----SRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLI 102 R+ A + K+ + + + +G V G Sbjct: 191 PAAGGDRKLAVRASRNIRKEAITDAAGGISDSIVRQVIVSGRPVIVSDALADTQF--GRS 248 Query: 103 PGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQ-FDVFSDEELRLIAALAAGALSNAL 161 ++K+ + + PL + +IGAL + + FD + L + A+ A+ L NA+ Sbjct: 249 DSVIAMKLSSVMCAPLLSQGQIIGALYVGNDKIKHLFDRAQLDLLSIFASQASLILQNAM 308 Query: 162 LIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGK 221 L+ L + + ++IG P M ++ ++++ VAA+D++VLI+GETGTGK Sbjct: 309 LLNALRADKAKLVAELHDKK--FGEIIGACPSMLEVFRKLQKVAATDISVLITGETGTGK 366 Query: 222 ELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNG 281 EL+A+ +H SPR P V +NC A+PE++ ESELFGHVKGAFTGAI++R GKF++AD G Sbjct: 367 ELIARELHRRSPRDGGPFVTINCGAIPENLIESELFGHVKGAFTGAIASRPGKFQIADKG 426 Query: 282 TLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFR 341 TLFLDEIGEL L LQ KLLR LQ + RVGD + +VD+R++AATNR+L EE+ AG FR Sbjct: 427 TLFLDEIGELPLNLQVKLLRALQERVVFRVGDSKPEKVDIRIVAATNRNLEEEIRAGNFR 486 Query: 342 ADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFP 401 DL++RL+V L +PPLRERGDDV+++A + G + S A + ++ Y +P Sbjct: 487 EDLYYRLNVVNLWLPPLRERGDDVLIIAKVLLSKYADELGSAVRGFSPAALSAIKKYPWP 546 Query: 402 GNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATE 461 GN+R+LE+ I +A+VL E + L +A E Sbjct: 547 GNIRQLENRIKKALVLCDQALLAVEDL---------------DLGPGAETAIMPLEKAKE 591 Query: 462 AFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKR 499 FQR + +AL +N+ N AR L D + R ++ Sbjct: 592 EFQRRYVLEALERNNGNRTQTARDLGVDPRTIFRYLEK 629 >UniRef50_B3U4Q6 Nif-specific regulatory protein n=3 Tax=Bacteria RepID=B3U4Q6_9BACT Length = 517 Score = 531 bits (1370), Expect = e-149, Method: Composition-based stats. Identities = 152/516 (29%), Positives = 249/516 (48%), Gaps = 30/516 (5%) Query: 2 SFSVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSR----QFIPLAID 57 + + + L + L ++ + +R+V+ D + + Y+S+ +F + + Sbjct: 5 TLNFETLLEVTNALNSQRDIDSLWRVIADQIRKVIPWDRAGITLYESQTDSFRFYAVITN 64 Query: 58 GLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLP 117 + + + + + + QE L + +P Sbjct: 65 MATPALAHDSVIPREGSAVGWVHDNRRLHIREDLQKEQVFLEDRYYVQEGLGR--MINMP 122 Query: 118 LFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIE-------QLESQN 170 L + +G L + +Q D + L+ +A A A+ + L E +L +N Sbjct: 123 LLVRDHCLGTLNIGSVQTGHLDQDDCKFLQQVATQIAYAIDHVLAYEQIQQLSDRLRREN 182 Query: 171 MLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHE 230 + ++G S ++ ++ VA +D VL+ GETGTGKE++A+A+H+ Sbjct: 183 EYLAEEVKASR-NLRLVVGTSSSFRKVVDLLKAVAPTDTTVLLLGETGTGKEVLAQALHD 241 Query: 231 ASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGE 290 S R P + +NCAALP + ESELFGH +GAFTGA R+G+FE+A GTLFLDEIGE Sbjct: 242 LSLRCHKPFIRVNCAALPSGLIESELFGHERGAFTGAQLRRAGRFELAHTGTLFLDEIGE 301 Query: 291 LSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSV 350 + L QAKLLRVLQ G + R+G + + VDVR++AATN DL+ V G FRADLF+RL + Sbjct: 302 MPLETQAKLLRVLQDGMVDRIGGTQPVAVDVRLVAATNADLQAAVRQGTFRADLFYRLHI 361 Query: 351 FPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHA 410 FP+++PPLR+R +D+ LLA +F + + + + L Y++PGNVREL++ Sbjct: 362 FPIALPPLRDRREDIHLLAQHFLALIGGKLKRAHLAFDPQSMARLLTYNWPGNVRELQNV 421 Query: 411 IHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQ 470 I RAV+L+ +++ + +L A + P +R I + Sbjct: 422 IERAVILSGSSQVTVDEMLLPVVQAVHSPSSSLPVSLG-------------DLERYHIIE 468 Query: 471 ALAQNHHNW---AACARMLETDVANLHRLAKRLGLK 503 L Q A +L + L ++LGL+ Sbjct: 469 VLEQTKWRIYGEQGAAHLLGLNPETLRSRLRKLGLR 504 >UniRef50_C1A9W9 NtrC family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A9W9_GEMAT Length = 461 Score = 531 bits (1370), Expect = e-149, Method: Composition-based stats. Identities = 159/471 (33%), Positives = 230/471 (48%), Gaps = 15/471 (3%) Query: 32 LRQVLECDASALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPAD 91 + L DA +L D I ++ L K F G + + D Sbjct: 1 MTYALSDDAPRVLIVDDETSILDSLRILLKTEGFVPFTAHGGRQGVEQLQELRPDIVLTD 60 Query: 92 SELPDPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAA 151 +PD G+ + +V V + L Q + + + + F Sbjct: 61 VRMPD-VSGVQVLSAARQVDPDVPVILMTAQATLQS-AVQAVNEGAFYYIQK---PFRND 115 Query: 152 LAAGALSNALLIEQLESQNMLPGDATPF-EAVKQTQMIGLSPGMTQLKKEIEIVAASDLN 210 L A +L ++N + E + IG S ++ + E VA +D Sbjct: 116 ELVAILRRAAEHRKLRAENQVLKQEIRRRERNASQRPIGRSKSWLEVLRLAETVAPTDST 175 Query: 211 VLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISN 270 VLI+GE+GTGKE+VA+ IH+ S R N + +NC ALPES+ ESELFGHVKG+FTGA+ + Sbjct: 176 VLITGESGTGKEVVARYIHDLSARTDNGFMSINCGALPESLLESELFGHVKGSFTGAVKD 235 Query: 271 RSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRD 330 ++G F A++GT FLDEIGE + + Q KLLR LQ ++ VG + VD RVLAATNRD Sbjct: 236 KTGLFAAANHGTFFLDEIGETTPSTQVKLLRALQQREVIPVGATESVSVDTRVLAATNRD 295 Query: 331 LREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAG 390 L EE+ G FRADLF+RL+V + +PPLR+R DD+ +LA F + + + VL+ G Sbjct: 296 LEEEIKRGGFRADLFYRLNVIAVHLPPLRQRADDIPVLAESFLARSATLRHEEQKVLNEG 355 Query: 391 ARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVP 450 A + L Y +PGNVRELE+A+ RAV+L + + E E + Sbjct: 356 ALDALMAYGWPGNVRELENALERAVILCSGNTISADALPERVTARRAEPLV--------- 406 Query: 451 VVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLG 501 + + EA +R I+ L N + A ML D + L+R R G Sbjct: 407 SERAPVSPTLEAIERAYIQWVLQNEGGNKSRAADMLGIDPSTLYRKLARYG 457 >UniRef50_A5GBB3 Two component, sigma-54 specific, transcriptional regulator, Fis family n=6 Tax=Desulfuromonadales RepID=A5GBB3_GEOUR Length = 500 Score = 531 bits (1370), Expect = e-149, Method: Composition-based stats. Identities = 142/479 (29%), Positives = 221/479 (46%), Gaps = 19/479 (3%) Query: 38 CDASALLRYDSRQFIP-LAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPD 96 + + +L D + I L+K A G + D LPD Sbjct: 1 MEHNRILIVDDEKLISWSLSVMLSKAGYAVETAASGSEAINK-LSLFKPDMALLDIRLPD 59 Query: 97 PYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGA 156 DGL Q+ + + + + + + ++ D Sbjct: 60 -ADGLDLLQQFKLRDEELSVIMITANADVDS-AVRALKLGAEDYIGK---PFNMEALRHV 114 Query: 157 LSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDL-NVLISG 215 + A QL + + + +++G S M L K I++ A +D VLI G Sbjct: 115 IDKAFEKRQLREKLDFFRKELR-KKTEHDKLVGNSASMVNLFKMIKVCADTDAKTVLILG 173 Query: 216 ETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKF 275 E+GTGKELVA+AIH S RA P +NCAA+PE++ ESELFGH KGA+T A R G F Sbjct: 174 ESGTGKELVARAIHNHSARAEAPFAEVNCAAIPETLLESELFGHEKGAYTDASKRRKGIF 233 Query: 276 EMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEV 335 E+A+ GT+FLDEIG++ ++QAK+L+V++ +R+G + ++ DVR++AAT++DL V Sbjct: 234 ELAEGGTVFLDEIGDMPFSMQAKVLKVIETKRFRRLGAEEDIQADVRIIAATHQDLPAMV 293 Query: 336 LAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLL 395 RFR DLF+RL+V + +PPLRER DD+ L YF E+ G +S L Sbjct: 294 KERRFRGDLFYRLNVMNIPLPPLRERTDDIPSLVQYFIERLNEEYGRRVEGVSPETMAYL 353 Query: 396 QHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQN 455 Y +PGNVREL +AI R ++L + + + + V + + + Sbjct: 354 TGYGWPGNVRELRNAIERTMMLEHSRILTPVFLNAEIKQQYETAQNKSLHVDSHASAQHS 413 Query: 456 LRE----------ATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLKD 504 + E +R+ IR L + N A+ L+ L K+ G+ + Sbjct: 414 FARGHITIPTGGISLEELERQLIRMGLEISGGNQTKAAKYLKMSRDTLRYRMKKFGMSE 472 >UniRef50_A6DT60 Sigma-54 dependent transcriptional regulator/response regulator n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DT60_9BACT Length = 463 Score = 531 bits (1369), Expect = e-149, Method: Composition-based stats. Identities = 142/473 (30%), Positives = 227/473 (47%), Gaps = 19/473 (4%) Query: 38 CDASALLRYDSRQFIPLAIDGLAKDV--LGRRFALEGHPRLEAIARAGDVVRFPADSELP 95 + +L D GLA+ + F I V D ++P Sbjct: 1 MNKKKILIVDDE---IHTCQGLARALKYEWETFTASNGKEAIKIFEDNPVDIILTDVKMP 57 Query: 96 DPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDE-ELRLIAALAA 154 +G+ ++ + + + N + +D ++ +D + L + + Sbjct: 58 -GMNGIELLRQLKNIRPETPAIVMSAYNETETV-VDAVKAGAYDFITKPFRLDDLDGVLK 115 Query: 155 GALSNALLIEQLESQNMLPGD-----ATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDL 209 A+ + + ++ T + Q+I S M + + ++ +A + Sbjct: 116 TAVQASPSFQLPSTKKATSAQLPAIAQTAKGSKNSPQIIYQSVAMENVLRTVQQIAPARS 175 Query: 210 NVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAIS 269 +VLI+GETGTGKE++AKAIH AS R+ + ++CAAL ++ ESELFGH KG+FTGA Sbjct: 176 SVLITGETGTGKEVIAKAIHAASTRSKKAFIAVHCAALNANLFESELFGHEKGSFTGANE 235 Query: 270 NRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNR 329 R G+FE AD GTLFLDEIGE+ A Q KLLR+L+ +RVG + L D R++AATNR Sbjct: 236 KRIGRFEAADGGTLFLDEIGEIDAATQVKLLRILESRSFERVGGNETLYSDARLIAATNR 295 Query: 330 DLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSA 389 DLR+ V AG FR DL++RL V L +PPLR+R +D+ L ++ L+ +A Sbjct: 296 DLRKMVQAGEFREDLYYRLDVINLELPPLRDRREDIPALLQHWLISSVTENQLNVKGFTA 355 Query: 390 GARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAV 449 A L Y +PGNVREL + + R VL++ + + +++ E A + Sbjct: 356 DAMARLCTYDWPGNVRELRNVVERMAVLSQQEYLDLPNLPDHVLLGEQQLS----ETAKI 411 Query: 450 PVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 + L ++ I +AL ++++N A L LHR K+ G+ Sbjct: 412 EDKDKALD--VAENEKVLILKALKESNNNRTLAAERLGMSRRTLHRRLKQFGI 462 >UniRef50_UPI00016C54BB two component, sigma54 specific, transcriptional regulator, Fis family protein n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C54BB Length = 463 Score = 531 bits (1369), Expect = e-149, Method: Composition-based stats. Identities = 148/465 (31%), Positives = 222/465 (47%), Gaps = 15/465 (3%) Query: 40 ASALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYD 99 LL D + A+ D L R G+ +D +P D Sbjct: 9 RGKLLIVDDEVELMRALCESLTDAGFEARGLSDPALAADALREGEPDVLLSDLMMP-GTD 67 Query: 100 GLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSN 159 G+ + L+ + + GQ I ++ M+ FD L Sbjct: 68 GIQLLRRCLEADPHLVGIIMTGQGTIQT-AVEAMKAGAFDYVLK---PFRLQQVLPVLDR 123 Query: 160 ALLIEQLESQNMLPGDATPFEAVKQTQ--MIGLSPGMTQLKKEIEIVAASDLNVLISGET 217 A+ + +L +N + + ++G P + ++ + IE VA + VL+ G + Sbjct: 124 AMEVRRLRRENANLRRYVQRLTFESDRYRIVGSGPAVRKVVQLIEKVAPTTATVLVRGPS 183 Query: 218 GTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEM 277 GTGKELVA+A+H S R PLV +NCA L E++ ESELFGH KGAFTGA + G FE+ Sbjct: 184 GTGKELVARAVHGNSARRDKPLVTVNCATLQETLLESELFGHEKGAFTGADRPKPGLFEV 243 Query: 278 ADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLA 337 A+ GTLF+DE+ E++ ALQAKLLRVL+ G +RVG + R DVR++AATN+ L E A Sbjct: 244 AEGGTLFVDEVAEMAPALQAKLLRVLEDGHYRRVGSTQEKRADVRIIAATNKPLEAEQKA 303 Query: 338 GRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQH 397 GRFR DLF RLSV + +P L++R +DV L +F + G + + AR+LL Sbjct: 304 GRFREDLFFRLSVITVDLPALKDRREDVPELIQHFL--HTRQVGRGPMTVDPAARSLLCR 361 Query: 398 YSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLR 457 Y +PGN+REL + + RA +LA + + + + P A Sbjct: 362 YDWPGNIRELANVLERAQILAEGSVITPDDLPDNL------AAGSGPPAAGEEPAPTTGP 415 Query: 458 EATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 + + +R +R L ++ N A+ L L+RL + L Sbjct: 416 DDLDRVERHHVRDVLHRHGGNKVQAAKALGVSRRTLYRLIDKYKL 460 >UniRef50_Q311G4 DNA-binding protein Fis / transcriptional regulator, Fis family n=10 Tax=Desulfovibrionales RepID=Q311G4_DESDG Length = 576 Score = 531 bits (1368), Expect = e-149, Method: Composition-based stats. Identities = 156/512 (30%), Positives = 245/512 (47%), Gaps = 27/512 (5%) Query: 5 VDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLAKDVL 64 + L I ++ Q + L+ TL + L+ +D Sbjct: 64 LGTLQRIVSDMGPQRPFQSSLKSLLRTLAENHHFKRPHLVIFDPETQTLKLSLTHDPTKA 123 Query: 65 GRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDG-LIPGQESLKVHACVGLPLFAGQN 123 G + +G V P + P + +E L + +P+ Sbjct: 124 QDVEYSPGVGVTGQVFSSGQPVIVPRMKDHPSFLNKAFGRSEEELATLGFICVPVLGPGE 183 Query: 124 ------LIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSN--ALLIEQLESQNMLPGD 175 +IG L++D D+ S E + AG ++N A L E++ Q + Sbjct: 184 EASPREVIGTLSVDTPIT---DLPSLEGQCRFLQVVAGMIANQAAYLQEEMARQKHMMTQ 240 Query: 176 -----ATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHE 230 V+ ++ S M + ++ V S L+ GE+GTGKEL+A+AIH+ Sbjct: 241 GLIGGDVAENTVQAANIVAASKSMRLVLNQVAQVGPSRATALLRGESGTGKELLAEAIHQ 300 Query: 231 ASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGE 290 ASPR PL+ LNCAALP + ESELFG+ KGAFTGA+ N+ G FE+A GTLFLDEIGE Sbjct: 301 ASPRRDMPLIKLNCAALPSDLVESELFGYQKGAFTGAVQNKKGLFELAHKGTLFLDEIGE 360 Query: 291 LSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSV 350 LS + QAK+LR +Q +IQR+G ++ + VDVR++ AT++ L E V +G FR DL++R++V Sbjct: 361 LSASAQAKVLRAIQEQEIQRLGSEQTISVDVRLICATHQHLEELVESGSFREDLYYRINV 420 Query: 351 FPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHA 410 FP+ +PPLRER +D++ +A +F ++ S +S A +LL Y +PGN+REL++ Sbjct: 421 FPVFIPPLRERREDILPVAEHFLKEYAEEYQKSIKRISTPAIDLLTQYHWPGNIRELKNC 480 Query: 411 IHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQ 470 I RAV++ + + + + EA F++E + Sbjct: 481 IERAVLVCDEQVIRTYHMPPSL----------QTAESTATDSSLSFCEAVAKFEQELLVD 530 Query: 471 ALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 AL + N AR L ++ K+ G+ Sbjct: 531 ALKKARGNMLQAARDLRVSYRIVNYKVKKYGI 562 >UniRef50_B5EHD0 Two component, sigma54 specific, transcriptional regulator, Fis family n=7 Tax=Desulfuromonadales RepID=B5EHD0_GEOBB Length = 458 Score = 531 bits (1368), Expect = e-149, Method: Composition-based stats. Identities = 143/460 (31%), Positives = 219/460 (47%), Gaps = 7/460 (1%) Query: 43 LLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLI 102 +L D FI + + A I ++ D L DG+ Sbjct: 4 ILIIDDEAFICENVQRILSGEGFLVCAAGSGKEARDIVAGEEIDLALLDLNLGSE-DGIE 62 Query: 103 PGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALL 162 + + + + + G + + ++ +Q F A + AL Sbjct: 63 VLKSLKETDPELLVIIITGYGSVES-AVESLQLGAFHYMKK---PFKADALRLIVKLALK 118 Query: 163 IEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKE 222 + L+ + + +IG S ++ ++ +A VLI+GE+GTGKE Sbjct: 119 TQTLKREVRKLKRNDSPLPGRSP-IIGKSEAFQEMAAQVREIARIPSTVLITGESGTGKE 177 Query: 223 LVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGT 282 +VA+AIH+ S R + +NCA++P + ESELFGH KGAFTGA + G FE A +GT Sbjct: 178 VVARAIHDLSDRKEQAFIAINCASIPAPLLESELFGHEKGAFTGASGRKKGLFEEAHHGT 237 Query: 283 LFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRA 342 +FLDEIGE+ +A+Q KLLRVLQ I+RVG + + +D RV+AATNR+L + + FR Sbjct: 238 IFLDEIGEMDMAMQVKLLRVLQERTIRRVGAVKDIEIDARVIAATNRNLAKRIEEKSFRE 297 Query: 343 DLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPG 402 DLF+RL+VFP+++PPLRER D+ LA YF + G +S A L+ Y++PG Sbjct: 298 DLFYRLNVFPINIPPLRERPADIAALAVYFLDSFSRSFGRDFRDVSPEAEQLMAQYAWPG 357 Query: 403 NVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEA 462 NVREL + I R ++ E + + LP ++ L EA A Sbjct: 358 NVRELRNVIERICIMRSGPTLLPEHLPQEIRSTVAPPPLPAELPISI-AADLGLEEAVSA 416 Query: 463 FQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 ++ I+QAL + N A L+ L ++ GL Sbjct: 417 IEKSLIQQALQKTGWNVLQTAANLKIPRGTLRYKMEKYGL 456 >UniRef50_Q306N7 PilR2 n=17 Tax=Deltaproteobacteria RepID=Q306N7_MYXXD Length = 474 Score = 531 bits (1368), Expect = e-149, Method: Composition-based stats. Identities = 165/472 (34%), Positives = 227/472 (48%), Gaps = 12/472 (2%) Query: 36 LECDASALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELP 95 + + L+ D + L R +G L+ A D D +P Sbjct: 1 MPLFRTILVADDEPSIRHILTLVLTGHGYDVRAVADGEDALKE-LAARDYDVLLCDVRMP 59 Query: 96 DPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAG 155 DGL+ +E+L H + + + L + FD Sbjct: 60 K-KDGLVVLREALASHPALTAVVMSAYGSQEQ-ALQAVAAGAFDYVQKPFKP---DEIVF 114 Query: 156 ALSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISG 215 L A E+L +N A+ ++G SP + L +++ +A D VLISG Sbjct: 115 VLRKAEERERLVRENRRLKQASLPSTPG-GHILGESPALHALLRQVARLAPVDTTVLISG 173 Query: 216 ETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKF 275 E+GTGKEL+A+ +H SPRA V +NC A+P + ESELFGH KGAFT A + + G F Sbjct: 174 ESGTGKELIARELHVRSPRAPMSFVAVNCGAIPSGLIESELFGHAKGAFTDARTAKRGLF 233 Query: 276 EMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEV 335 AD GTLFLDE+GEL LA Q KLLRVLQ G+I+ VG++R +V+VRV+AAT RDL V Sbjct: 234 AEADGGTLFLDEVGELPLAAQVKLLRVLQEGEIRPVGENRVEKVNVRVVAATLRDLSRLV 293 Query: 336 LAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGL--SRVVLSAGARN 393 G FR DL++RL+V L VPPLRER +DV LLA F + L+A A Sbjct: 294 AKGDFREDLYYRLNVVNLRVPPLRERREDVPLLARAFIARFNRELNREPPVAGLTAEAEA 353 Query: 394 LLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILE---AQHFAFPEVTLPTPEVAAVP 450 LL+ Y++PGNVRELE+A+ RAV+LA + E A P P + Sbjct: 354 LLKSYAWPGNVRELENAMERAVLLADEPHILPANLPERLWAASPPGPHGEKPHGDPVLQG 413 Query: 451 VVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 +L+ A + IR AL + N A +L+ L K G+ Sbjct: 414 GGDLSLKRAIRELEESYIRAALRKTKGNRTRAAELLDISHRALLYKIKEYGI 465 >UniRef50_A8ZU14 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Deltaproteobacteria RepID=A8ZU14_DESOH Length = 468 Score = 530 bits (1367), Expect = e-149, Method: Composition-based stats. Identities = 153/468 (32%), Positives = 236/468 (50%), Gaps = 8/468 (1%) Query: 35 VLECDASALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSEL 94 + A+ L+ D L L+++ A +G L + D L Sbjct: 1 MAGAKANILVVDDELSMRELLDVMLSREGYKVACAEDGTQALSMLGEM-KFDLVLCDVRL 59 Query: 95 PDPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAA 154 D G+ + + K + + + + + M +D L +A Sbjct: 60 GD-MSGIDVLKAAKKANHDTVVIMISAYATTEV-AVAAMNEGAYDFVPK---PLDSAELK 114 Query: 155 GALSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLIS 214 + +L + +E + ++ +++G P M + + VA + +LI+ Sbjct: 115 QTIIRSLSLRTVEQERQALDNSLEDHLY-FERIVGSHPKMKHIYNMVRQVAQTRTRILIT 173 Query: 215 GETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGK 274 GE+GTGKEL+A+AIHE S RA +P V +NC +PE++ ESELFGH KG+FTGA+ ++ G Sbjct: 174 GESGTGKELIARAIHEQSDRANHPFVVVNCGGIPENLMESELFGHRKGSFTGAVMDKKGL 233 Query: 275 FEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREE 334 F +A GT+FLDEIGELS+ LQ KLLRV+Q G ++VG + VD R+L+ATN++L +E Sbjct: 234 FTIAHKGTIFLDEIGELSMPLQVKLLRVVQDGAFKQVGGTEEISVDARILSATNKNLSQE 293 Query: 335 VLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNL 394 V+ G FR DLF+RL+V L+VPPLRER D+ +LA +F E+ G + LS+ A ++ Sbjct: 294 VIDGNFREDLFYRLNVIELNVPPLRERKSDIRVLAQFFVEKFSKDLGKEVIKLSSYALDM 353 Query: 395 LQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQ 454 L+ YSFPGNVRELE+ I R+V L+ E + A H +P V K Sbjct: 354 LEKYSFPGNVRELENLIERSVALSTTNIILPESLSLAVHKRRWIEGVPGRRFDLEEVTKG 413 Query: 455 -NLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLG 501 L E +R +++AL + N A +L + +L Sbjct: 414 VALDEILADIERAYLKKALESSGGNKNRAAELLGISFRSFRYRLDKLN 461 >UniRef50_B8F9K7 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8F9K7_DESAA Length = 464 Score = 530 bits (1367), Expect = e-149, Method: Composition-based stats. Identities = 149/467 (31%), Positives = 219/467 (46%), Gaps = 13/467 (2%) Query: 36 LECDASALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELP 95 + D + L+ D R + + L K L A +G L I V AD ++P Sbjct: 1 MSRDLTILVADDDRTTTAILKNTLEKQSLTPVVANDGIQAL-KILEETPVDLVIADYQMP 59 Query: 96 DPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAG 155 DG Q + + + +T++ M+ + L Sbjct: 60 -GLDGFELLQAMKDRGMDIPFVMVTAHGSVD-MTMNAMRLGAIEYLVKPVDPLD---IVV 114 Query: 156 ALSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISG 215 + L I +++S+ + T ++G SP M L + I + S NVLI+G Sbjct: 115 LVEKTLNINRMKSRLSRLQKEVE-KKYHFTNIVGQSPQMQILFESIHKASKSTANVLITG 173 Query: 216 ETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKF 275 E+GTGKEL AKA+H P P V +NC+A ESELFGHVKGAFT A + G+F Sbjct: 174 ESGTGKELAAKAVHYNGPLKEGPFVAVNCSAFSSGTLESELFGHVKGAFTDAHRDHMGRF 233 Query: 276 EMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEV 335 E+A+ GTLFLDE+G++ +Q KLLRVLQ +RVG + D R++AATNRDL++ V Sbjct: 234 ELANKGTLFLDEVGDIPADIQVKLLRVLQDKTFERVGAQEPIHSDFRLVAATNRDLKDLV 293 Query: 336 LAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLL 395 G+FR DLF+RL+V ++ P LRE +D+ LL +F ++ G S LS A ++ Sbjct: 294 RKGKFREDLFYRLNVIGMTTPALREHPEDIPLLISHFLKRYGQVGGRSIKTLSMHAMKIM 353 Query: 396 QHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQN 455 Q Y +PGNVR+LE+AI A + + + + + + Sbjct: 354 QEYRWPGNVRQLENAIESAAAMCDGSMIRTADLP------LEITAPQSEDPLREDAYRGT 407 Query: 456 LREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 L E E ++ I +AL QN A AR L + GL Sbjct: 408 LPEVVERIEKHMILRALEQNQWVKAHAARTLGVSERVVSYKMANYGL 454 >UniRef50_P0AFB9 Nitrogen regulation protein NR(I) n=502 Tax=Bacteria RepID=NTRC_ECO57 Length = 469 Score = 530 bits (1366), Expect = e-149, Method: Composition-based stats. Identities = 146/480 (30%), Positives = 225/480 (46%), Gaps = 25/480 (5%) Query: 38 CDASALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDP 97 + D I ++ E + + +D +P Sbjct: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMP-G 59 Query: 98 YDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDE-ELRLIAALAAGA 156 DGL ++ + H + + + + + A + Q FD ++ AL A Sbjct: 60 MDGLALLKQIKQRHPMLPVIIMTAHSDLDA-AVSAYQQGAFDYLPKPFDIDEAVALVERA 118 Query: 157 LSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGE 216 +S+ +Q N+ T +IG +P M + + I ++ S ++VLI+GE Sbjct: 119 ISHYQEQQQPR--NVQLN-------GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGE 169 Query: 217 TGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFE 276 +GTGKELVA A+H SPRA P + LN AA+P+ + ESELFGH KGAFTGA + R G+FE Sbjct: 170 SGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFE 229 Query: 277 MADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVL 336 AD GTLFLDEIG++ L +Q +LLRVL G RVG ++VDVR++AAT+++L + V Sbjct: 230 QADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQ 289 Query: 337 AGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQ 396 G+FR DLFHRL+V + +PPLRER +D+ LA +F + G+ +L L Sbjct: 290 EGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALT 349 Query: 397 HYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQN- 455 ++PGNVR+LE+ V+A + + + + + + + Sbjct: 350 RLAWPGNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQW 409 Query: 456 ------------LREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 L EA +R + AL + AR+L L R K LG++ Sbjct: 410 ADRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 >UniRef50_A6GDL8 Sigma-54 dependent transcriptional regulator, Fis family protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GDL8_9DELT Length = 590 Score = 530 bits (1366), Expect = e-149, Method: Composition-based stats. Identities = 160/514 (31%), Positives = 240/514 (46%), Gaps = 33/514 (6%) Query: 15 LQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHP 74 L RG+ ++ ++ + L+ + L D R ++ ++ R G Sbjct: 76 LTRGVELDALLVTVVDSIVEHLDAERGTLYLVDGRSRTLTSVVAHLPELERIRLDF-GQG 134 Query: 75 RLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLF-AGQNLIGALTLDGM 133 +A G ++ P D I Q + + LP+ + +IG L L Sbjct: 135 VAGTVAAQGQIIAVSDPGADPRF-DASIDRQTGFSTRSMLALPIRDSAGEVIGVLQLLNA 193 Query: 134 QPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDA----------------- 176 QF + + +A A L L L +++ L +A Sbjct: 194 GRGQFTLADQAKATTLATSAGQVLQATSLYADLRARSPLEREADPEPSEAVEEPDPSQSQ 253 Query: 177 -TPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRA 235 P Q++G S M Q+ + A +D VLI+GE+GTGKEL+A+A+H SPR Sbjct: 254 IRPGPKYTFNQIVGESRAMRQVYAIVRKAAGTDATVLITGESGTGKELIARAVHVNSPRR 313 Query: 236 VNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLAL 295 V ++C LPE++ E+ELFGH +GAFTGA GKFE+AD GTLF+DEIGEL L L Sbjct: 314 EQAFVKVDCTTLPEALIENELFGHERGAFTGAHRTAPGKFEVADGGTLFIDEIGELPLTL 373 Query: 296 QAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSV 355 Q KLLRVLQ + +RVG +R D+RV+ AT+RDL V AG FR DL++R+ V P+ + Sbjct: 374 QGKLLRVLQDREFERVGGTTTIRTDIRVICATHRDLPAMVDAGAFREDLYYRVRVVPIEL 433 Query: 356 PPLRERGD-DVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRA 414 PPLR+RG D + L +F ++ R G ++ A+ L + FPGN+RELE+ I A Sbjct: 434 PPLRDRGSADRLRLIEHFVDRYGRRHGRPIHRVTKAAQARLLEHDFPGNIRELENCIESA 493 Query: 415 VVLARATRSGDEVIL----EAQHFAFPEVTLPTPEVAAVPVVKQNLR-------EATEAF 463 VVL+ + + +A+ + ++PT + NL + A Sbjct: 494 VVLSDEGTIDVDDLPLAPRKAKRGRTQQGSVPTETGQSSGHSGPNLGLQLGDPTLSLAAI 553 Query: 464 QRETIRQALAQNHHNWAACARMLETDVANLHRLA 497 +R I + N + AR L L R Sbjct: 554 ERAHIEAVVQACEGNQSEAARRLGIGRNTLARKL 587 >UniRef50_A0LKM2 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=A0LKM2_SYNFM Length = 462 Score = 530 bits (1366), Expect = e-149, Method: Composition-based stats. Identities = 147/465 (31%), Positives = 219/465 (47%), Gaps = 18/465 (3%) Query: 38 CDASALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDP 97 L+ D R L L A G L A D ++ + Sbjct: 2 AGEKILVVDDDRGLRTLMKARLEGAGYRVTLAERGEEALTAAQEEVYSAAVL-DLKM-EE 59 Query: 98 YDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGAL 157 DG++ ++ L V + + + I A ++ + +D + A L Sbjct: 60 MDGMVLLEKLLLVQPYLPVIILTAYGTI-AGAVEATKKGAYDFMTK---PFEAKDLLYRL 115 Query: 158 SNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGET 217 AL + L + E +I S M Q+ ++ +AA+D V + GE+ Sbjct: 116 EKALEVGSLRMEVERLRT-LVRERYHFDNIIASSEKMQQVLLQVSQIAATDSTVCLYGES 174 Query: 218 GTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEM 277 GTGKEL+AK +H S R+ P V +NC A+PE + ESELFGH KGAFTGA + G + Sbjct: 175 GTGKELIAKVLHLTSTRSRGPFVAINCGAIPEGLLESELFGHTKGAFTGADQAKKGLLQQ 234 Query: 278 ADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLA 337 A+ GTLF+DEI EL+ ALQ KLLRV Q + VG + ++VD R++AATN+DL + + Sbjct: 235 AERGTLFMDEIAELTPALQVKLLRVFQDHEFYPVGGVQPVKVDTRLVAATNQDLWKAIQD 294 Query: 338 GRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQH 397 G+FR DL++R+ V P+ +PPLRER +D+ LLA +F + + S A + L Sbjct: 295 GKFREDLYYRIHVIPVYLPPLRERPEDIPLLAHHFLQHFNGTMNKNIPGFSPDAMHRLML 354 Query: 398 YSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLR 457 + +PGNVREL + + RAVVLAR E +L L V+ L Sbjct: 355 HRWPGNVRELANVVERAVVLAREGNICAEHLL-----------LEREAVSDSGTELPPLT 403 Query: 458 EATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 A + F+R + Q L N + A A ++L ++ L Sbjct: 404 AARDEFERAYLIQVLHSTKGNVSRAAAKAGRYRAEFYKLLRKYDL 448 >UniRef50_B8JEK1 Sensor protein n=14 Tax=cellular organisms RepID=B8JEK1_ANAD2 Length = 1079 Score = 530 bits (1366), Expect = e-149, Method: Composition-based stats. Identities = 162/461 (35%), Positives = 231/461 (50%), Gaps = 9/461 (1%) Query: 42 ALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGL 101 L+ D +A L + A G L +A + D + +D ++PD DG+ Sbjct: 622 VLVVDDDPGTRKVARANLTLEGFEVLVASSGAEALARLAES-DPLAMVSDLKMPD-LDGI 679 Query: 102 IPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNAL 161 + + + + L + ++ M+ + L A L +A+ Sbjct: 680 ALMERVHALRPSLPVVLVTAHATVET-AVEAMRKGALHYLTK---PLRFDELALVLRHAV 735 Query: 162 LIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGK 221 E+ + A +++G +P M ++ +E VA +D VL+ GETGTGK Sbjct: 736 AHERARRDVLRLRGELERAA-GFEEIVGTAPAMREVFAMVEQVAPADATVLLRGETGTGK 794 Query: 222 ELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNG 281 ELVA+AIH SPR P V +NC A+P+ + ESE FGH KGAFTGA++ R G+FE AD Sbjct: 795 ELVARAIHRRSPRRDRPFVAVNCTAIPKDLMESEFFGHEKGAFTGAVARRVGRFEQADGS 854 Query: 282 TLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFR 341 TLFLDE+G+L LA+QAKLLRVLQ +I RVG L+VDVR++AATNRDL V GRFR Sbjct: 855 TLFLDEVGDLDLAIQAKLLRVLQEQEITRVGARDPLKVDVRIVAATNRDLEALVHEGRFR 914 Query: 342 ADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFP 401 DLF+RL+V PL +PPLRER D+ L +F R G + V + Y +P Sbjct: 915 DDLFYRLNVIPLRLPPLRERPQDLPALLEHFLRSFAQRYGRTSPVPPPDLLAAARAYPWP 974 Query: 402 GNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATE 461 GNVREL + RAV++ A A P+ P ++P+++ R E Sbjct: 975 GNVRELRNLCERAVLMGWAA-VAPIFGAGAGVTPRPDAGAGVPVDTSLPLLEARQRL-VE 1032 Query: 462 AFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 F+RE + + L + AR NL+ K GL Sbjct: 1033 RFEREYLTRLLKERRGRIGEVARAAGIAERNLYEKMKAYGL 1073 >UniRef50_B8DQD3 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Desulfovibrionales RepID=B8DQD3_DESVM Length = 515 Score = 530 bits (1366), Expect = e-149, Method: Composition-based stats. Identities = 156/486 (32%), Positives = 215/486 (44%), Gaps = 30/486 (6%) Query: 40 ASALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYD 99 A L+ D L + A G LE + D D + D Sbjct: 37 ARILVVDDEAIARDNLALALGRQGHETFTAANGAEALE-LLAGADFDLVLTDLMM-QGMD 94 Query: 100 GLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSN 159 GL + H + + G + ++ M + A + Sbjct: 95 GLDLLRAVRMRHPDTEVVVVTGYPTVKT-AVEAMHAGAYHYLPK---PYDLNEARALVQK 150 Query: 160 ALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGT 219 AL +L + + ++ ++G +P M LK+ I VA SD+ VLI GETGT Sbjct: 151 ALEKRRLRQEVARLREQLRERSLPVP-LLGSAPCMQALKRTIAQVAPSDVTVLILGETGT 209 Query: 220 GKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMAD 279 GKEL A+ +H S R+ + +NC A E + ESELFGH +GAF+GA+ R G FE A+ Sbjct: 210 GKELAARMVHLFSRRSEARFLAINCGAFNEELLESELFGHEQGAFSGAVRQRKGLFEAAE 269 Query: 280 NGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGR 339 GTLFLDE+GE+SL +Q KLLR +Q I+RVG + VDVR+LAATN+DL E AGR Sbjct: 270 GGTLFLDEVGEMSLPMQVKLLRAVQERTIRRVGGTADIPVDVRLLAATNKDLAAEAAAGR 329 Query: 340 FRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYS 399 FR DL++RL+V L +PPL ER +DV LLA YF E+ G ++ +L Y Sbjct: 330 FRHDLYYRLNVVVLRMPPLAERMEDVPLLAQYFAEKAARDTGRPAPHIAPETLGVLARYP 389 Query: 400 FPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFA-----------------------F 436 FPGNVREL + I RA VL + Sbjct: 390 FPGNVRELHNIIERAAVLCAGDVITPADLPPDLRALAGIAGGAGGNGGKGGAAGPALVLR 449 Query: 437 PEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRL 496 + P A + + +R I L N A++L+ D A+L R Sbjct: 450 ADEAARMPGGAGEGMTPDGRPMTLDENERAHIEWVLELAGGNRTHAAKVLDIDRASLWRK 509 Query: 497 AKRLGL 502 KR GL Sbjct: 510 LKRYGL 515 >UniRef50_Q1PVM8 Similar to sigma-54 dependent transcriptional response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PVM8_9BACT Length = 453 Score = 530 bits (1365), Expect = e-149, Method: Composition-based stats. Identities = 148/469 (31%), Positives = 227/469 (48%), Gaps = 16/469 (3%) Query: 35 VLECDASALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSEL 94 + + + + L+ D+ + + + K A G L I ++ D + Sbjct: 1 MSQYNTTILIIDDNEEHANATAEAIQKVGYKCIVATSGKAGL-KIIETEEIDVVITDLIM 59 Query: 95 PDPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAA 154 D G+ + + + + L G + +D MQ + Sbjct: 60 HDF-SGMEILKATKEKLPEAEIILITGYGTVET-AVDAMQKGAATFLLK---PININHLR 114 Query: 155 GALSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLIS 214 ++ + + L N+L E T +IG S M ++ + ++ ++ VLI+ Sbjct: 115 AEINKLVEKQNLVRNNILLQKQL-DEKYGLTGIIGNSASMQKVLTMVNQISGTNATVLIT 173 Query: 215 GETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGK 274 GE+GTGKEL+AK IH S R NPLV LN AA+PE++ ESELFGH KG+FTGA+ R GK Sbjct: 174 GESGTGKELIAKTIHNNSLRKHNPLVILNSAAIPENILESELFGHEKGSFTGALYQRKGK 233 Query: 275 FEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREE 334 FE A GT FLDEIG++ L+ QAKLLRVL+ G I R+G + + VDVR++AATN++L Sbjct: 234 FEYAHRGTFFLDEIGDMPLSAQAKLLRVLEDGMITRIGSNESIEVDVRLIAATNQELGNL 293 Query: 335 VLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNL 394 + G+FR DL+ RL+V + +PPLRER +D+ LL F + + ++ AR + Sbjct: 294 IKEGKFREDLYFRLNVIRIKLPPLRERLEDIPLLLDAFIREFSRLYSKEILQITPEARKI 353 Query: 395 LQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQ 454 L Y +PGN+REL++ I VV+ E + + E+ + +A + Sbjct: 354 LLRYQWPGNIRELKNCIESMVVITTKKYLDVEDLPDHIEKKSDEMPVSHGLMAGM----- 408 Query: 455 NLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 E + E I+ LA N ARML L+R LK Sbjct: 409 ----TMEDAEIELIKCTLASVGGNREEAARMLGIGERTLYRKLDLYRLK 453 >UniRef50_Q7UNH5 Acetoacetate metabolism regulatory protein ATOC n=2 Tax=Planctomycetaceae RepID=Q7UNH5_RHOBA Length = 485 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 148/480 (30%), Positives = 227/480 (47%), Gaps = 22/480 (4%) Query: 40 ASALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYD 99 AS LL D + LA++ A + + + D L D Sbjct: 5 ASILLVDDDHHLATSLGEWLAEEGFETHLAGTLEDARQQLKQHA-FELVITDLRL-GGED 62 Query: 100 GLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSN 159 G+ + K H+ + + G ++ ++ D+ + +I A+ Sbjct: 63 GMTLVSDVKKHHSDTPVLVMTGYATPNT-AVEAVRAGAVDLLTK---PVIDDELLLAIDR 118 Query: 160 ALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGT 219 A+ ++E++N + ++ M ++ I+ VA + ++LI+GE GT Sbjct: 119 AMNQRKIEAENETLRRQL-DQRSGLENILSHDYRMMKIFDVIDSVADAKASILITGENGT 177 Query: 220 GKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMAD 279 GK ++A+AIH R P + + C ALP+++ ESELFGHV GA+TGA ++R GKFE+AD Sbjct: 178 GKSMIARAIHNRCARRSGPFIEVACGALPDTLLESELFGHVAGAYTGANTDRRGKFELAD 237 Query: 280 NGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGR 339 GTLFLDEI + A+Q KLLRVLQ + +G VD RV+ ATN +L + V G Sbjct: 238 GGTLFLDEIATATPAMQVKLLRVLQELQFEPLGGMETRSVDTRVILATNENLDQAVADGS 297 Query: 340 FRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYS 399 FR DL++R++V + +P LRER D+ LL +F + G A LQ Y+ Sbjct: 298 FRQDLYYRINVVNIVLPSLRERTGDIPLLVDHFLREAAETAGRDIDGFDREAMKCLQSYA 357 Query: 400 FPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQ----- 454 +PGNVR+LE+ + RAV+LA + + V P V Sbjct: 358 WPGNVRQLENVVERAVLLATDRVLTKDDLPPDVLGTSANQHASIGSVGHSPGVTASSGAS 417 Query: 455 ----------NLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLKD 504 +LREA E +RE I +L +++ N AA A LE + L++ KRLGL D Sbjct: 418 SFNPAVLDGCSLREALEGPEREIILHSLRRHNWNRAATADELEINRTTLYKKMKRLGLDD 477 >UniRef50_Q3IJS0 Transcriptional regulator of anaerobic NO reduction and detoxification (EBP family) n=6 Tax=Gammaproteobacteria RepID=Q3IJS0_PSEHT Length = 528 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 239/523 (45%), Positives = 326/523 (62%), Gaps = 22/523 (4%) Query: 1 MSFSVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLA 60 MS +++ +A++L + ++ F++L+T L V+ DASALL Q PLAI GL Sbjct: 1 MSSAIN-FTAVAVKLAQSTLDKNCFEQLLTVLETVIASDASALLELQGEQLKPLAIKGLM 59 Query: 61 KDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESL-KVHACVGLPLF 119 D LGRRF L HPRLEAI ++F D LPDPYDGL+ + VHAC+GLPLF Sbjct: 60 PDSLGRRFKLSEHPRLEAICNTQQPLQFAHDCPLPDPYDGLLLAKTGDIPVHACLGLPLF 119 Query: 120 AGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIE--QLESQNM-LPGDA 176 Q L+G +T D + + F+ S + L + L + AL + +L +Q+ Sbjct: 120 YQQQLLGVITFDSLNANAFNAISAQTLSTLQTLCSAHFKTALQLAHYKLHAQHSSALVQE 179 Query: 177 TPFEAVKQTQ--MIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPR 234 EA+ + +IG S + LK +I++VAAS+ +VLI GETG GKELVA+ IH S R Sbjct: 180 LNREALTRDGGEIIGQSSAIQALKNDIKLVAASNFSVLILGETGVGKELVARNIHLHSKR 239 Query: 235 AVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLA 294 + PL++LNCA+L E++AESE FGH KGAFTGA R GKF++A GTLFLDEIGEL L Sbjct: 240 SEQPLIHLNCASLAENLAESEFFGHAKGAFTGADHARQGKFQLAHGGTLFLDEIGELPLV 299 Query: 295 LQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLS 354 LQ+KLLRVLQ G+IQ VG+D VDVRV+AATNR+L++EV GRFRADL+HRLSV+PL+ Sbjct: 300 LQSKLLRVLQSGEIQTVGEDEVKYVDVRVIAATNRNLKKEVAEGRFRADLYHRLSVYPLT 359 Query: 355 VPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRA 414 V PLR+R +DV+LLAG+F EQ + + ++ LS A+ LL Y +PGNVRELEH I RA Sbjct: 360 VAPLRQRENDVVLLAGFFVEQTARKLAIKQLKLSVDAQLLLTQYQWPGNVRELEHVISRA 419 Query: 415 VVLARATRSGDEVI-LEAQH--------------FAFPEVTLPTPEVAAVPVVKQNLREA 459 + A+ ++ +I ++ +H T + +L++A Sbjct: 420 ALKAKQSQWQQAIITIKPEHCELNLSPSNTTQLSLPASTTNTTTGSSTNIAEQNLSLKQA 479 Query: 460 TEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 T+ F I Q L Q+++NWA+ AR L+ D ANL RLAKRLG+ Sbjct: 480 TDTFTHHLISQQLEQHNYNWASAARTLKVDRANLVRLAKRLGI 522 >UniRef50_A0LLZ0 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=A0LLZ0_SYNFM Length = 466 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 143/461 (31%), Positives = 223/461 (48%), Gaps = 8/461 (1%) Query: 43 LLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLI 102 L+ D + L L D+ + V D ++P+ +GL Sbjct: 7 LIVDDEEDLLQLLKRSLEPDLGCEVKVASSGGEALNVLEREPVDLLLVDMKMPE-MNGLE 65 Query: 103 PGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALL 162 ++ + + + + I L + ++ +D + +L+ AL Sbjct: 66 LLEQVRAGYPWLTVVMMTAHGCIE-LAVQAIRMGAYDFITK---PFDHETLVLSLNKALE 121 Query: 163 IEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKE 222 +L +N+ ++G S M ++ + I++VA +DL VLI+GE+GTGK+ Sbjct: 122 RSRLLRENLNLQRHVQMHEA-FQNLVGKSARMQRVYEAIQMVAKTDLTVLITGESGTGKD 180 Query: 223 LVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGT 282 L +AIH S R NP V +NC A+PE++ ESELFG+ KGAFT A NR+G F+ A GT Sbjct: 181 LACRAIHALSQRRSNPFVAVNCPAIPENILESELFGYRKGAFTHATQNRTGLFQEAHKGT 240 Query: 283 LFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRA 342 +FLDEIG++S +QAKLLRVLQ I+ +GD + + VDVRV+A+TNRDL + + G FR Sbjct: 241 IFLDEIGDISPNIQAKLLRVLQEKVIKPLGDTKSVSVDVRVVASTNRDLGDRIRRGEFRE 300 Query: 343 DLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPG 402 DLF+RL+V P+ +P LRER +D+ LL + E+ R ++ + +PG Sbjct: 301 DLFYRLNVLPIVMPSLRERPEDIPLLVNHLIEKHCAALNRPRKSVAPELTEIFLRAPWPG 360 Query: 403 NVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEA 462 NVRELE+ I R ++ A E + H + K EA Sbjct: 361 NVRELENVIVRGLLFAPRDEILPEDV--GFHRPVKGRIPGKDAPSTNVPYKDAKEEALRG 418 Query: 463 FQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 F E L N + A++ + L +L +R G++ Sbjct: 419 FHAEYFGGVLTATRGNVSHAAKLCGLERQALQQLLRRYGIR 459 >UniRef50_Q9K8Q5 Two-component response regulator in acetoacetate metabolism n=3 Tax=Bacillus RepID=Q9K8Q5_BACHD Length = 453 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 140/459 (30%), Positives = 212/459 (46%), Gaps = 14/459 (3%) Query: 42 ALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGL 101 L+ D L D I + D ++ DGL Sbjct: 4 ILIIDDEPSICSSLQFALEDDYETEATTEVDKGL--HIIEQEPIDVVLLDLKIGK-VDGL 60 Query: 102 IPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNAL 161 QE + + + I A ++ ++ + + + L AL Sbjct: 61 EVLQEIKRKKPETIVIMITAYGTI-ANSVKAIRLGAYSYLTK---PIHMEELFSVLEQAL 116 Query: 162 LIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGK 221 ++L Q + MIG S MTQ+ IE V D +VLI+GE+GTGK Sbjct: 117 HYKKLNEQVAYLSQELE-KKYGYEGMIGKSEAMTQVFHLIEKVKNVDSSVLITGESGTGK 175 Query: 222 ELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNG 281 ELVA+AIH + R +NCAA+PE + ESELFG+ KGAFTGA + + GKF++A+ G Sbjct: 176 ELVARAIHFSGKRKQEHFEVVNCAAIPEHLLESELFGYEKGAFTGAATRKEGKFQLANRG 235 Query: 282 TLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFR 341 T+FLDEIG++ LALQAKLLRVLQ ++ ++G ++ ++DVRV+AATN+ L+E+V G FR Sbjct: 236 TIFLDEIGDMPLALQAKLLRVLQKKEVTKLGSNKTEKLDVRVIAATNKSLQEQVKEGTFR 295 Query: 342 ADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFP 401 DL+ RL V + +PPLRER +D+ L +F G S + A+ L Y +P Sbjct: 296 EDLYFRLHVIHIHLPPLRERQEDLPYLLQHFLHTFNQELGKSMKGFRSDAQRELLAYQYP 355 Query: 402 GNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATE 461 GN+REL + + ++V+A E + + + + Sbjct: 356 GNIRELSNIVESSMVIADGEYIELEDLPMFIREKGEGFAKQKGSLDDY------IGRPLK 409 Query: 462 AFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRL 500 +++ I L N ++ A ML L K+ Sbjct: 410 ELEKDFILATLKHNDNHRKKTAEMLGISERGLRDKLKQY 448 >UniRef50_A6EHB3 Sigma-54-dependent transcriptional regulator n=1 Tax=Pedobacter sp. BAL39 RepID=A6EHB3_9SPHI Length = 664 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 167/482 (34%), Positives = 241/482 (50%), Gaps = 28/482 (5%) Query: 33 RQVLECDASALLRYDSRQFIPLAIDGL-------AKDVLGRRFALEGHPRLEAIARAGDV 85 ++ + LL D Q + L ++ + H + + AG Sbjct: 193 AALIALSNALLLVSDEVQLEEVVGRQLLQFSFIADHLLIYPVDHIAEHAVFDNVISAGVP 252 Query: 86 VRFPADSELPDPYDGLIPGQESLKVHACVGL-PLFAGQNLIGALTLDGMQPDQFDVFSDE 144 V PA D + + ++ H V + + L ++ + E Sbjct: 253 VIIPAR----DMRSVPVLSEWLVEAHDDVVVGTAMYQDTALLGLLYLRLKNKEQSAPLLE 308 Query: 145 ELRLIAALAAGALSNALLIEQLES-QNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEI 203 + IAA AL+N ++L + P A +++G SP M ++ + Sbjct: 309 LIGAIAAQLTLALNNLRYRQELAAGTAFFPLTAQDRLEYAFPEIVGGSPQMQEVFNLMGQ 368 Query: 204 VAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGA 263 VA S VLI GETG GKEL+A AIH+AS RA +V +NCAA+P ++ ESELFGH KG+ Sbjct: 369 VAPSTATVLILGETGVGKELIAGAIHQASDRAERQMVRINCAAIPANLIESELFGHEKGS 428 Query: 264 FTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRV 323 FTGA R+GKFE+AD T+FLDEIGELSL LQ KLLRVLQ + +R+G + VDVRV Sbjct: 429 FTGATDRRTGKFELADQSTIFLDEIGELSLDLQVKLLRVLQEKEFERIGGSGTISVDVRV 488 Query: 324 LAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLS 383 +AATNR+L +EV AGRFR DL++RL+VFP+S+P LR+R D+ LLA +F E+ +++ G Sbjct: 489 IAATNRNLLDEVEAGRFRMDLYYRLNVFPISLPSLRDRRADIPLLANFFLERYKMKSGKK 548 Query: 384 RVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPT 443 S + + Y +PGN+RELEH I R V+L T D I A Sbjct: 549 ISGFSQKVMSAMMKYRWPGNIRELEHLIERQVILTEGTLIRDLDIPAAH----------- 597 Query: 444 PEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWA---ACARMLETDVANLHRLAKRL 500 +V A Q + +R+ I L + + A++L L+ K+L Sbjct: 598 -QVMATDGSGQTEIKTIAQNERDHIFSVLRLCNGKISGKNGAAKLLGVPATTLNSKIKKL 656 Query: 501 GL 502 GL Sbjct: 657 GL 658 >UniRef50_B4DAQ1 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DAQ1_9BACT Length = 987 Score = 528 bits (1360), Expect = e-148, Method: Composition-based stats. Identities = 141/353 (39%), Positives = 207/353 (58%), Gaps = 12/353 (3%) Query: 161 LLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTG 220 +LE+QN + + +++G SP + Q+ ++++ VA++D VLI GETGTG Sbjct: 631 QDKARLEAQNTYLQEEIRSQH-NFVEIVGNSPSLLQVLRQVDRVASTDSTVLICGETGTG 689 Query: 221 KELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADN 280 KEL+A+AIH+ SPR PLV +NC A+ + ESELFGHVKGAFTGAI+NR G+FE+AD Sbjct: 690 KELIARAIHDRSPRRERPLVKVNCGAISTGLVESELFGHVKGAFTGAIANREGRFELADG 749 Query: 281 GTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRF 340 GT+FLDE+GEL Q KLLRVLQ + + +G + ++VDVRV+AATNRDL V G+F Sbjct: 750 GTIFLDEVGELPPETQVKLLRVLQEQEFEPIGSTKTVKVDVRVIAATNRDLETMVREGKF 809 Query: 341 RADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSF 400 R+DLF+RL+V PL++PPLR+R +D+ LL +F E+ + G S ++ L Y + Sbjct: 810 RSDLFYRLNVVPLTMPPLRQRANDIPLLTMFFLEKFARKLGKSLGQIAEETMARLCQYPW 869 Query: 401 PGNVRELEHAIHRAVVLARATRSGDE--------VILEAQHFAFPEVTLPTPEVAAVPVV 452 PGN+REL++ I RAVVL+ + E ++ PE + + Sbjct: 870 PGNIRELQNVIERAVVLSTGSLLTVEKGALPGATGVMAQGPGWTPERAMIDAAEPLSTPL 929 Query: 453 KQNLREATEAFQRETIRQALAQNHHNW---AACARMLETDVANLHRLAKRLGL 502 A E +R+ I L Q + A++L + L ++LG+ Sbjct: 930 GATSGNALEDVERQHIASVLQQTNWRIEGANGAAKILNLQPSTLRSRMQKLGI 982 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 26/186 (13%), Positives = 57/186 (30%), Gaps = 3/186 (1%) Query: 4 SVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAI---DGLA 60 + L NI + + F L L+ + D + + I I + Sbjct: 310 ETEALLNITRAIGHHLQRDVLFGALAECLQTAVPTDCFGIALPVAGARIQAHILNQKNIR 369 Query: 61 KDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFA 120 + E + + + E+ + + + ++ + LPL A Sbjct: 370 SEGAPPTLHEAKGSAAEWVMKNREWYVAATRREVSERFPKTSEMMQREQMESACVLPLVA 429 Query: 121 GQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFE 180 G + GAL + + + +A+ A AL + L+ E++ Sbjct: 430 GDRVRGALFFLAAGKESYAALQHAFMNQVASAVAVALDDCLVQEEMRRLGEELAAQKIAR 489 Query: 181 AVKQTQ 186 +Q + Sbjct: 490 LEQQKE 495 >UniRef50_C1ZJW6 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains n=2 Tax=Planctomyces RepID=C1ZJW6_PLALI Length = 662 Score = 527 bits (1359), Expect = e-148, Method: Composition-based stats. Identities = 167/500 (33%), Positives = 257/500 (51%), Gaps = 15/500 (3%) Query: 4 SVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLAKDV 63 + + +A +L + R+ ++L+CD +++ +D +A L + Sbjct: 167 KLREILKLAAQLANEQQTEKLLTRIAEEATRLLDCDRASIFIWDREHHEVIACPALGVEG 226 Query: 64 LGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLF-AGQ 122 R + + + + ++R P + K + PL Sbjct: 227 GSLRLS-DKVGVVGEVIAKVQLIRVDDAYADPRF-HRKVDASSGYKTSNLLCGPLRDLDG 284 Query: 123 NLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAV 182 ++GA + + F + L + A AL N E L + N + Sbjct: 285 KVLGAFEVINHRQGPFSQEDEITLLDLCIQIAAALQNTRERELLVTSNRQLTEQVS---- 340 Query: 183 KQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYL 242 + ++G SP + ++ I +A +DL VLI GE+GTGKE+VA ++H RA P + + Sbjct: 341 RGVNIVGESPAIVAMRSTIRRLAGTDLPVLILGESGTGKEVVASSLHYQGSRADRPFIAV 400 Query: 243 NCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRV 302 NCAAL E++ ESELFGH +G+FT A R GKFE+A+ GT+FLDEIG+LS QAKLLRV Sbjct: 401 NCAALTETLLESELFGHERGSFTDAHEMRRGKFELAEGGTIFLDEIGDLSAGGQAKLLRV 460 Query: 303 LQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERG 362 L+ I RVG + + ++ RV+AATN L E V A +FR DL+ RL+V L +PPLRER Sbjct: 461 LEQKVITRVGGSQTIPINARVIAATNARLAEAVRAKKFREDLYFRLNVVTLEIPPLRERA 520 Query: 363 DDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATR 422 DDV+ LA YF EQ ++ ++ LSA AR LQ +++PGNVREL + + R LA A R Sbjct: 521 DDVLPLAEYFLEQFAVQARRGKMHLSAEARRRLQSHAWPGNVRELRNLMERVAFLAPAER 580 Query: 423 SGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAAC 482 E + + P + P + L EAT +FQ+E IR+A+ + +N + Sbjct: 581 IEVEDL--------AFILSPERDSFHEPSLDMGLSEATNSFQQEYIRRAIKRVRNNMSEA 632 Query: 483 ARMLETDVANLHRLAKRLGL 502 AR+L +NL+R ++L + Sbjct: 633 ARLLGLHRSNLYRKMRQLDM 652 >UniRef50_Q1IRW0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IRW0_ACIBL Length = 463 Score = 527 bits (1358), Expect = e-148, Method: Composition-based stats. Identities = 152/464 (32%), Positives = 228/464 (49%), Gaps = 8/464 (1%) Query: 43 LLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLI 102 +L D + I ++ + + + + + D +P +G+ Sbjct: 4 ILVCDDERSICEMLEIALRKEGHKVETVTSGEAAKRKLDSALFDVVVTDIRMPQT-NGIE 62 Query: 103 PGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALL 162 + + ++ + L + I A D + A+ NA+ Sbjct: 63 VLRHAHQISPDTAVVLITAVDDIEAAVAAVKAGGAADYIRKS--PSLIDDIRVAIGNAVE 120 Query: 163 IEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKE 222 L+ QN+ ++G SP M +LK I +VA++ VLI GE+GTGKE Sbjct: 121 RGSLKRQNLAYKRDAAG-RNSLDNIVGTSPAMGKLKNTIRMVASTGSTVLIHGESGTGKE 179 Query: 223 LVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGT 282 LVA+A+H SPRA P +NC A PE++ ESELFG+VKGAFTGA+ N+ G FE++ GT Sbjct: 180 LVARAVHTCSPRAGEPFTSINCGAFPETLLESELFGYVKGAFTGAVQNKRGLFEVSTGGT 239 Query: 283 LFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRA 342 +FLDEI E++L +Q KLLRVLQ I+ VG + VDVRV+AATN++L +V G FR Sbjct: 240 IFLDEISEMTLTMQVKLLRVLQERCIRPVGGTSEIPVDVRVIAATNKNLDAQVADGVFRE 299 Query: 343 DLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPG 402 DL++RLSV P+ VPPLRER DD+ LLA +F ++ G S + + L+ Y +PG Sbjct: 300 DLYYRLSVIPVQVPPLRERVDDIELLANHFLKKYAPAAGKSIRAIRVESLGDLREYDWPG 359 Query: 403 NVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVA----AVPVVKQNLRE 458 NVR+LE+ I RAV L + E+ E Q A+ ++ Sbjct: 360 NVRQLENTIERAVALEMSDVLHVEIPTERQKNKPAAAAAVAGFSGNGQVAINADGIDMEA 419 Query: 459 ATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 +R ++QAL Q + A +L+ + L K+ L Sbjct: 420 YVANIERSLLQQALKQANGVQTKAADLLKLSYRSFRHLMKKYEL 463 >UniRef50_D0LIH3 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LIH3_HALO1 Length = 466 Score = 527 bits (1358), Expect = e-148, Method: Composition-based stats. Identities = 168/462 (36%), Positives = 221/462 (47%), Gaps = 11/462 (2%) Query: 42 ALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGL 101 L+ D R L D L + A G L A A+A D LP DGL Sbjct: 16 ILVVDDERGIRALCSDVLRRAGHEVEVADTGTAGLAA-AKAKRFDLIFCDINLP-GVDGL 73 Query: 102 IPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNAL 161 L+ + L + + GM+ D + AL Sbjct: 74 TMLPSLLEREDPPTVILITAFPSVET-AVRGMKLGARDYLTKPFTP---DELRMVCRRAL 129 Query: 162 LIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGK 221 + + +N A ++G SP M QLKK + VA +D+NVL+ GE+GTGK Sbjct: 130 SEDAMRRENAELRHALA-----YGNLVGQSPAMLQLKKTVAKVAGADINVLVMGESGTGK 184 Query: 222 ELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNG 281 ELVA+A+H RA V +NC AL +S+ ESELFGHV+GAFTGA + G F AD G Sbjct: 185 ELVARALHYQGARAGRAFVPVNCGALVDSLLESELFGHVRGAFTGAEQAKRGLFLAADGG 244 Query: 282 TLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFR 341 TLFLDEIGEL LALQ KLLR LQ G+I+ VG RVDVRV+AATNRDL+E V G FR Sbjct: 245 TLFLDEIGELPLALQPKLLRALQDGEIKPVGGLEPQRVDVRVVAATNRDLQEAVAQGSFR 304 Query: 342 ADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFP 401 DLF+RL+V + VP LRER +DV +LA +F R + +S A L +P Sbjct: 305 EDLFYRLNVITIEVPALRERREDVPVLAQHFAASAARRARRACPDISPAALEWLAAQPWP 364 Query: 402 GNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATE 461 GNVR+LE+AI RAVVLA G E A + + + Sbjct: 365 GNVRQLENAIERAVVLAAGNTLGIEDFQPRAGVAGLAAESAPGRRTGGRGDSADDLLSLD 424 Query: 462 AFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 +R I + L + +L + L + ++ GL+ Sbjct: 425 ELERLHILRVLEACGGQKTKASAVLGINRTTLWKKLRQYGLE 466 >UniRef50_A0L6X2 Transcriptional regulator, NifA, Fis Family n=6 Tax=Proteobacteria RepID=A0L6X2_MAGSM Length = 550 Score = 527 bits (1358), Expect = e-148, Method: Composition-based stats. Identities = 164/527 (31%), Positives = 238/527 (45%), Gaps = 31/527 (5%) Query: 1 MSFSVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAI---- 56 ++ ++ L + L ++ + ++ S + D L Sbjct: 25 IASQLEALYQVGRILAEEGNLTAVLDGVLEAVEKMGGMSKSIITLSDPETGRLLVRAVHD 84 Query: 57 --DGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACV 114 +G A G + +I + G+ + L + Sbjct: 85 SNEGFAPLGGDDIVYRPGEGVMGSIMQNGNTFICELPANEQRFLHRLGLLD---PTLPFI 141 Query: 115 GLPLFAGQNLIGALTLDGMQPD-QFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLP 173 G+PLF IG L + + F L ++A L + + + EQL++ Sbjct: 142 GVPLFLDAKPIGVLAAQPVFGNRAFLREQAHFLEMVANLVSQKVRSNQRYEQLQALLSSQ 201 Query: 174 G------------DATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGK 221 + Q ++G + M Q+ A D VL+ GE+GTGK Sbjct: 202 AVGRSTTAMSTAIRIENERSGMQPVLLGKAASMKQVVNMALKAAQFDSTVLVLGESGTGK 261 Query: 222 ELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNG 281 ELVA +H S RA P V +NCA+L +++ ESELFGH KGAFTGAI+ R G+FEMAD G Sbjct: 262 ELVANTVHYNSARASRPFVKVNCASLSDNLLESELFGHEKGAFTGAIATRKGRFEMADGG 321 Query: 282 TLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFR 341 TLFLDEIGE+S + QAKLLRVLQ G+ +RVG R ++V+VRV+AATNRDL EV G FR Sbjct: 322 TLFLDEIGEISPSFQAKLLRVLQEGEFERVGGARTIKVNVRVVAATNRDLSAEVQKGNFR 381 Query: 342 ADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFP 401 ADLF+RL V P+ +P LRER +D+ LL E+ +Q + ++ A L Y + Sbjct: 382 ADLFYRLHVLPIEIPALRERMEDLPLLTEALLERISTKQHRP-LSITKEALRRLMMYEWA 440 Query: 402 GNVRELEHAIHRAVVLARATRSGDEVIL------EAQHFAFPEVTLPTPEVAAVPVVKQN 455 GNVRELE+ + RA VL+ I+ A + A+P Sbjct: 441 GNVRELENCLERAAVLSDEGHIDASHIIFSSGANREPMPALTNHRIHNASSCALPSSADL 500 Query: 456 LREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 E +RE + AL Q+ A AR+L + K L + Sbjct: 501 SDPTLE--ERERVMGALEQSGWVQAKAARLLGMTPRQVAYRIKILNI 545 >UniRef50_C6W352 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Dyadobacter fermentans DSM 18053 RepID=C6W352_DYAFD Length = 693 Score = 527 bits (1358), Expect = e-148, Method: Composition-based stats. Identities = 169/491 (34%), Positives = 248/491 (50%), Gaps = 40/491 (8%) Query: 30 TTLRQVLECDASALLRYDSRQ--FIPLAIDGL----AKDVLGRRFAL--EGHPRLEAIAR 81 TL ++ S L D+ Q P D + F ++ + Sbjct: 217 KTLERLFNTRISVLYLLDTDQVTLRPYLYDRQFFQETEVAENEAFYSLNINEEHVKLVFE 276 Query: 82 AGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVF 141 + V D L L +E + L G+ +G + + G D Sbjct: 277 SSQPVLLDIDENLEAKCLKLSIQRELSGFNRVYASALRLGEQKLGMVWMLG------DQV 330 Query: 142 SDEELRLIAALAAGALSNA-------LLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGM 194 S L+ I A + A+SN L +QLE +N + +++G M Sbjct: 331 SGPILQGICAQISTAVSNVLANEQILRLQKQLEDENHYLKQQLNKD---FEEIVGGGEAM 387 Query: 195 TQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAES 254 Q+ + I +VA S+ VL+ GETGTGKEL+AKA+H S R ++ +NCAA+P S+ ES Sbjct: 388 QQVYRLISLVAESNATVLLLGETGTGKELIAKAVHHTSARKDKLMIKVNCAAMPASLIES 447 Query: 255 ELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDD 314 ELFGH +GAFTGA+ R GKFE+A+N TLFLDE+GE+ + Q KLLRVLQ +++RVG Sbjct: 448 ELFGHERGAFTGAVERRIGKFELANNSTLFLDEVGEMPMETQVKLLRVLQEKEMERVGGK 507 Query: 315 RCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCE 374 ++++VR++AATNRDL EV AGRFR+DL++RL+VFP+++PPLR+R +D+ LAG+F Sbjct: 508 TTIKLNVRIIAATNRDLEAEVKAGRFRSDLYYRLNVFPINLPPLRDRREDIESLAGFFLA 567 Query: 375 QCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHF 434 + G V LSA A LQ Y +PGNVRELEH I R+V+LA + + +A Sbjct: 568 KFSKSIGKKTVKLSANALRQLQAYLWPGNVRELEHLIERSVILATDPMIREFFLPQATGA 627 Query: 435 AFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWA---ACARMLETDVA 491 E T+ + E +R I Q L + + A +L Sbjct: 628 TTDEHTMQS-------------DLTLEQVERMHIIQVLRRCGGKISGIGGAAEILGIPGN 674 Query: 492 NLHRLAKRLGL 502 +H ++LG+ Sbjct: 675 TIHSKMRKLGI 685 >UniRef50_Q1ZUC7 Formate hydrogenlyase transcriptional activator n=4 Tax=Vibrionaceae RepID=Q1ZUC7_PHOAS Length = 717 Score = 526 bits (1357), Expect = e-148, Method: Composition-based stats. Identities = 149/514 (28%), Positives = 240/514 (46%), Gaps = 16/514 (3%) Query: 4 SVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLAKDV 63 + VL ++ + ++ L+ L Q + ++++ + + + ++ Sbjct: 196 NFQVLVDVTNTVISQSTKKELIGSLLRFLYQHFDMTDLSIIQLQDGHYNQHSACFINNEI 255 Query: 64 LGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFAGQN 123 + ++ + V A D P +V +PL Sbjct: 256 DYQCHFFTNDKLIKNAIKNNKPVFLNAIDIKKMQADNNSPY-FPSRVKTACVMPLVFRGI 314 Query: 124 LIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPG----DATPF 179 +G ++ + E + IAA A A+ + + + D Sbjct: 315 AVGYISFMKPIEAPYQNTDLELFKQIAARVALAMHSIKTHQASTPNQPITKFVNIDEGMG 374 Query: 180 EAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPL 239 E V +I S M ++ +++ +VA+ D VLI GE+GTGKEL+A+AIH+ S R+ + Sbjct: 375 EHVIFDDIISQSEVMNKVLEQVALVASCDSTVLILGESGTGKELIARAIHKLSLRSKTDM 434 Query: 240 VYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKL 299 V +NCAA+P + ESELFGH +GAFTGAIS R G+FE A GTLFLDEIG++ L LQ KL Sbjct: 435 VKMNCAAIPAGLFESELFGHERGAFTGAISQRVGRFEQAHKGTLFLDEIGDMPLELQPKL 494 Query: 300 LRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLR 359 LR LQ +I+RVG + + VDVR++ ATN DL V +FR DL++RL+VFP+ +PPLR Sbjct: 495 LRALQENEIERVGKNALISVDVRIVVATNVDLLRRVEEKKFRNDLYYRLNVFPIQIPPLR 554 Query: 360 ERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLAR 419 ER +D+ LL +F + + G + ++A ++ + +PGNVREL + + R+V+L R Sbjct: 555 ERAEDIPLLVKHFTRELAKKMGKTITAIAAEDLAVMSVFPWPGNVRELRNFVERSVILTR 614 Query: 420 ATRSGD---EVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETI-----RQA 471 E+ + P +P A V+ + I +A Sbjct: 615 GNVLNVPVHELKAVSHSACVPTEKVPPVNPEAAGVINTPEPAVKGDVVKPIIDKADVIKA 674 Query: 472 LAQNHHNWA---ACARMLETDVANLHRLAKRLGL 502 L H A A L L +++G+ Sbjct: 675 LKACHGVVAGPNGAANQLGLKRTTLLSRMQKMGI 708 >UniRef50_B8DK61 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfovibrio RepID=B8DK61_DESVM Length = 448 Score = 526 bits (1356), Expect = e-148, Method: Composition-based stats. Identities = 144/460 (31%), Positives = 210/460 (45%), Gaps = 19/460 (4%) Query: 44 LRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIP 103 + D L K+ + LEA+ +D LPD DGL Sbjct: 8 IVDDEPVVCKRLSHALFKEGYEVEAFMSARSFLEAMID-RPFDVVFSDMRLPD-MDGLEL 65 Query: 104 GQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLI 163 + + + + G I ++ M+ F + + A Sbjct: 66 LPKIKALRPETEVVIVTGYGSIQT-AIEAMREGAFHYVTK---PVNFTEIRAIARRAQEK 121 Query: 164 EQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKEL 223 + +N +A + + ++G SP + L + VA D NVLI GE+GTGK L Sbjct: 122 IGMRMENARLREALLGSS-GLSSIVGNSPAIQDLFALVRKVAPVDCNVLIQGESGTGKAL 180 Query: 224 VAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTL 283 VA A+H SPR P V NC E + SELFG+ KGAFTGA +++ G E A GT+ Sbjct: 181 VALALHHLSPRKNQPFVTFNCGGFTEELISSELFGYEKGAFTGASASKVGLLEAASGGTV 240 Query: 284 FLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRAD 343 FLDE+GE+ L++Q +LL VLQ I RVG + + +D+RV+AATNRDL+ EV G FR D Sbjct: 241 FLDEVGEMPLSMQVRLLHVLQERRILRVGGTKPVDLDIRVIAATNRDLKAEVEKGTFRED 300 Query: 344 LFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGN 403 LF RL+V ++P L +R +D+ LL +F ++ L S + A LQ YSFPGN Sbjct: 301 LFFRLNVVSTTLPRLADRREDIPLLVRHFIDKYGLAFRKSVQGIDEQALAALQGYSFPGN 360 Query: 404 VRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAF 463 VRELE+ I RAV L G + E ++ + Sbjct: 361 VRELENIIERAVALTDGQTIGLLDLPEDIR------------NLEFATLEGDGLPTLAEV 408 Query: 464 QRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 +R + + L + +N A++L L R K G++ Sbjct: 409 ERRYVIRILEKTGYNKRLAAQVLGVPRTTLWRKLKEYGVE 448 >UniRef50_B8FB78 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FB78_DESAA Length = 1036 Score = 526 bits (1356), Expect = e-148, Method: Composition-based stats. Identities = 157/513 (30%), Positives = 234/513 (45%), Gaps = 33/513 (6%) Query: 5 VDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQ----FIPLAIDGLA 60 + + ++ ++ ++ +++T+ Q+ + A+ + A L Sbjct: 541 LSGIYSLGNDMASVQDGKELLHSILSTVNQLTGAERGAIFVANEDPHGPPMKLRASRNLT 600 Query: 61 KDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFA 120 D + R ++ A G V + + P + G + + P+ Sbjct: 601 ADQVERPAFEPSMRLIQQAASLG-VDKKSFIRKESAPPEEWSAGSSE-AARSSICAPIIF 658 Query: 121 GQNLIGALTLD-GMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGD---- 175 +G L D + F E L AA AA AL NA E++E Sbjct: 659 KGKTLGVLYHDNRLLNSAFKESDFELLSFFAAQAAAALDNANAQEEIERLKRAMAQGGRI 718 Query: 176 --ATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASP 233 F ++IG S + ++ IE VA + NVLI GETG GKEL A A+H S Sbjct: 719 QSRPSFSRENYKEVIGKSQAVRKMLHLIEQVAKTGSNVLILGETGVGKELAANAVHYHSK 778 Query: 234 RAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSL 293 R V NC+AL E++ SELFGH KGAFTGA S R G+FE+AD GT+FLDEIG+L L Sbjct: 779 RRGKAFVKANCSALTETLINSELFGHEKGAFTGASSRRIGRFELADKGTIFLDEIGDLPL 838 Query: 294 ALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPL 353 +QA LLRVLQ + +RVG + +R D R++AATNRDL +FR DL++RL+VFP+ Sbjct: 839 DVQANLLRVLQSSEFERVGGNETIRSDFRLIAATNRDLERLAADKKFRQDLYYRLNVFPI 898 Query: 354 SVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHR 413 VPPLR+R +D+ LLA F + + +S N L Y +PGN+REL + I R Sbjct: 899 LVPPLRDRKEDIPLLAEQFIRGFAQKMQIEVKKISREEMNKLLKYHWPGNIRELANVIER 958 Query: 414 AVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALA 473 ++L+ + + + E +R I AL Sbjct: 959 GMILSSGPLFTAPDL-----------------EGQTDGHSLHRPHSLEENERSHILWALE 1001 Query: 474 QNHHNW---AACARMLETDVANLHRLAKRLGLK 503 Q + A L+ + + L K+LG+K Sbjct: 1002 QKNWKVRGPGGVAEFLDINPSTLAARMKKLGIK 1034 >UniRef50_B5ZJF6 Transcriptional regulator, NifA, Fis Family n=4 Tax=Gluconacetobacter diazotrophicus RepID=B5ZJF6_GLUDA Length = 581 Score = 526 bits (1355), Expect = e-147, Method: Composition-based stats. Identities = 167/555 (30%), Positives = 252/555 (45%), Gaps = 57/555 (10%) Query: 4 SVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLAKDV 63 ++ L I+ L + ++ L ++ + + + +D+ + I A D Sbjct: 23 ALFGLHEISKILCAPTETVGIIRNVLAVLESFVDLNNAVVALFDAAGNVETIIGTEADDA 82 Query: 64 LGRRFALE-GHPRLEAIARAGDVVRFPADSELPD-PYDGLIPGQESLKVHACVGLPLFAG 121 RR+ + IA + + P + + +G+P+ + Sbjct: 83 AARRYFDSIPEQAVGQIAVSRQPLLVPDVTGDTRYGFATSQAWTVGAGRIGVIGVPILSR 142 Query: 122 QNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATP--- 178 L+G + LD + V ++ L++ +A L ++ + Sbjct: 143 DRLVGVMLLDRPAIPEESVVGSMDVCLLSMVAGLMGQMVRLHRLVQRDRENLLHDSGLAQ 202 Query: 179 -----FEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASP 233 + ++G SP + + +++EIVA SD+ VL+ GE+GTGKEL A+AIH+ASP Sbjct: 203 PAAPVADGGGYMGIVGDSPALRAVLQKVEIVARSDVTVLLRGESGTGKELFAQAIHQASP 262 Query: 234 RAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSL 293 R P V LNCAALPESV ESELFGH KGAFTGAI R G+FE+AD GTLF+DEIGE+S Sbjct: 263 RHRKPFVKLNCAALPESVLESELFGHEKGAFTGAIGQRKGRFELADGGTLFMDEIGEISP 322 Query: 294 ALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPL 353 + QAKLLRVLQ G+ +RVG R L+VDVRV+ ATNR+L E V GRFRADL++RLSV P+ Sbjct: 323 SFQAKLLRVLQEGEFERVGGTRTLKVDVRVVTATNRNLEEAVSKGRFRADLYYRLSVIPI 382 Query: 354 SVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHR 413 +PPLR+R D+ +LA F + + + +++ ++L FPGNVRELE+ I R Sbjct: 383 FLPPLRDRPTDIPMLANEFLRRFN-ETNRTSLTIASDGMDVLTTCYFPGNVRELENCIRR 441 Query: 414 AVVLARATRSGDEVILEAQHFAFPE----VTLPTPEVAAVPVVKQNLREATEAFQ----- 464 LA G P P P + A + Sbjct: 442 TATLAPGQTIGAADFACRSDGCLSSIFWRPAAPAPGPGRHPAASDVAGDTGAATELPVLP 501 Query: 465 -------------------------------------RETIRQALAQNHHNWAACARMLE 487 R+ + +A+ A AR+L Sbjct: 502 APRSSSQSSPQSSAAPDPATCPSSAVCSAAQGEWSPQRDELLEAMETAGWVQAKAARILG 561 Query: 488 TDVANLHRLAKRLGL 502 + ++ G+ Sbjct: 562 LTPRQIGYALRKNGI 576 >UniRef50_UPI00016C3921 transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C3921 Length = 527 Score = 526 bits (1355), Expect = e-147, Method: Composition-based stats. Identities = 155/509 (30%), Positives = 241/509 (47%), Gaps = 23/509 (4%) Query: 8 LANIAIELQRGIGHQ-DRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLAKDVLGR 66 LA + +L + +G R L L P + D + Sbjct: 15 LAALLRDLSQALGPHLPRGYLSFALLEPHSHAGKLQFLEPVGGGPAPKSADTPTE----- 69 Query: 67 RFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFAGQNLIG 126 G + + + ++ P ++ ++ +PL + +G Sbjct: 70 --LPAGESPTAHVWDTQEPLWLDVTADGRFPVLRTAFAKQGVRCACF--VPLTTPRRKLG 125 Query: 127 ALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPG------DATPFE 180 A+ P + L A A+ AL ++LE N + Sbjct: 126 AMAFTSYLPVSPAPDDINFTLQVGRLVALAVEGALTRQELERANARLAAEKLYLEEEIRA 185 Query: 181 AVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLV 240 + +++G S + ++ K++E+VA +D VL++GETGTGKELVA+A+H S R+ V Sbjct: 186 DRRMHEVVGDSRTLQEVLKQVEVVAPTDSAVLVTGETGTGKELVARAVHRLSARSERTFV 245 Query: 241 YLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLL 300 LNCAA+P + ESELFGH KGAFTGA+ R G+FE+AD GTLFLDE+G++ LQ KLL Sbjct: 246 KLNCAAIPTGLLESELFGHEKGAFTGAVERRLGRFELADGGTLFLDEVGDIPQELQPKLL 305 Query: 301 RVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRE 360 RVLQ + +R+G + ++V+VR++AAT+R+L + V G+FR+DL++RL VFP+ +P LR+ Sbjct: 306 RVLQEQEFERLGSAKTVKVNVRLVAATHRNLAKLVAEGKFRSDLYYRLHVFPVHLPALRD 365 Query: 361 RGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARA 420 R +D+ L +F R G + A A L+ Y++PGNVREL+H I RAV+L Sbjct: 366 RREDIPSLVRHFVALFAQRFGKRIETIPAEAMAALERYAWPGNVRELQHLIERAVILTTG 425 Query: 421 TRSGDEV----ILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNH 476 + + A+ + P + P A +R+ IR+AL + Sbjct: 426 SELRVPLGELTPTTAEPPSHPRPAVALTIPPTSPAEPPPQFNALRESERDLIRRALDRCG 485 Query: 477 HNWA---ACARMLETDVANLHRLAKRLGL 502 A L L K+LGL Sbjct: 486 WVIGGPNGAAAQLGLKRTTLLSRMKKLGL 514 >UniRef50_C6HYC9 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HYC9_9BACT Length = 481 Score = 525 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 158/473 (33%), Positives = 228/473 (48%), Gaps = 24/473 (5%) Query: 43 LLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLI 102 +L D I + + +D R I D L + DGL Sbjct: 4 ILVADDEAGIRETLSSIFRDEGYRVSVAASLDEALRIGEVDPPDLALVDVWLGED-DGLS 62 Query: 103 PGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALL 162 QE ++ + + +G I + ++ D E +NAL Sbjct: 63 YLQEIARLPDPPAVVVMSGHGTIDT-AVKALKSGAADYI---EKPFSLDRVLTVAANALK 118 Query: 163 IEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKE 222 + LE +N + +M+G SP + L++ + VA ++ VLI+GE GTGKE Sbjct: 119 LRGLERENRALREKVSAR----YEMVGDSPAIEALRELVARVAPTEGWVLITGENGTGKE 174 Query: 223 LVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGT 282 LVA+++HE S R P V +NCAA+PE++ ESELFGH KGAFTGA+S R GKFE A G Sbjct: 175 LVARSLHEGSVRRSGPFVDVNCAAIPETLIESELFGHEKGAFTGALSRRPGKFEQASGGV 234 Query: 283 LFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRA 342 LFLDEIG+++L+ QA++LRVLQ + R+G R + VDVRV+AATNRDL + FR Sbjct: 235 LFLDEIGDMALSTQARVLRVLQERQLTRIGGTRSIPVDVRVVAATNRDLPGMIARKEFRE 294 Query: 343 DLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPG 402 DLF+RL+V + VPPLRER D+ +L +F E G + S A L ++PG Sbjct: 295 DLFYRLNVVSIRVPPLRERLSDIPILVEHFVEILCRDFGHRPKLFSREALEALCERTWPG 354 Query: 403 NVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPT---------------PEVA 447 NVREL++ + R ++LA + A + A Sbjct: 355 NVRELKNTVERLLILAPGPVIEVRDLEPAIPGTTDRGAEASRGETGEGRGGSPPDPGPGA 414 Query: 448 AVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRL 500 + LREA + F+R + LA+ N A A+ L D +LHR ++ Sbjct: 415 SGMEPDLPLREARDRFERGYVLGVLARCEGNIARAAQRLGMDRTSLHRRIRQW 467 >UniRef50_Q9K4U8 Nitric oxide reductase transcription regulator norR2 n=45 Tax=Proteobacteria RepID=NORR2_RALEH Length = 521 Score = 525 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 241/513 (46%), Positives = 301/513 (58%), Gaps = 19/513 (3%) Query: 10 NIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLAKDVLGRRFA 69 + +L + H R QRL++ LR C A ALLR + P+A+DGL +D LGRRFA Sbjct: 9 ELLADLVTDLPHAVRLQRLVSMLRTHFRCGAVALLRLEEDHLRPVAVDGLVRDALGRRFA 68 Query: 70 LEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQ--ESLKVHACVGLPLFAGQNLIGA 127 + HPRL AI V F DS LPDPYDGLI E L VH C+G L GA Sbjct: 69 VGLHPRLAAILARRGVTCFHHDSMLPDPYDGLIDEHVGEPLPVHDCMGTSLAVDGQPWGA 128 Query: 128 LTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQTQ- 186 LTLD + FD + EL+ + + A+ L ++ + + G E Q Sbjct: 129 LTLDALAIGTFDAAAQAELQRLTVIVEAAIRTTRLEGEIRALQLARGTPEADEGTAQHGD 188 Query: 187 ----MIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYL 242 +IG S + L E+E+VA +DL VL+ GETG GKEL A +H S R PLV++ Sbjct: 189 IGGEIIGQSEAIANLLHELEVVADTDLPVLLLGETGVGKELFAHRLHRQSRRRAQPLVHV 248 Query: 243 NCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRV 302 NCAALPES+AESELFGH +GAF+GA R G+FE AD GTLFLDE+GEL LA+QAKLLR Sbjct: 249 NCAALPESLAESELFGHARGAFSGATGERPGRFEAADGGTLFLDEVGELPLAIQAKLLRT 308 Query: 303 LQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERG 362 LQ G+IQR+G DR RV+VRV+AATNR+LRE V G FRADL+HRLSV+P+ +PPLRERG Sbjct: 309 LQNGEIQRLGSDRPRRVNVRVIAATNRNLREHVRDGSFRADLYHRLSVYPIPIPPLRERG 368 Query: 363 DDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAV------- 415 +DV+LLAG F E R R GL + LS GA++ L+ Y +PGNVRELEH I RA Sbjct: 369 NDVLLLAGRFLELNRARLGLRSLRLSGGAQDALRSYRWPGNVRELEHVISRAALRAVSRG 428 Query: 416 -----VLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQ 470 ++ D LE + + A LR+A E QR I Q Sbjct: 429 AGRNDIVTLEPELLDLDGLEVPAAHHAGAGMASAFAAPALAAGITLRDAVEQTQRACIEQ 488 Query: 471 ALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 AL NWA AR L D +NLH+LA+RLG K Sbjct: 489 ALKDQGGNWAQAARQLGIDASNLHKLARRLGCK 521 >UniRef50_B2V8F5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Sulfurihydrogenibium RepID=B2V8F5_SULSY Length = 440 Score = 525 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 139/461 (30%), Positives = 214/461 (46%), Gaps = 26/461 (5%) Query: 43 LLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLI 102 +L D + I I + + + ++ +D L D GL Sbjct: 4 ILLIDDEESILKVIKTVLSEAGFEVLTAKSKKESLSLIEKEKFDLIISDFLLEDG-TGLE 62 Query: 103 PGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDE-ELRLIAALAAGALSNAL 161 + K + I ++ ++ ++ + + + Sbjct: 63 ILESFRKKDILTPFLIITAYGSI-NGAVEAIKKGANHYIPKPIDIDNLIKIIDFYIKK-- 119 Query: 162 LIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGK 221 +N + +IG S M L KEI++V+ S+ ++LI GE+GTGK Sbjct: 120 ------QENFDVEEE-------FEGIIGKSQKMKDLFKEIDVVSKSESSILIEGESGTGK 166 Query: 222 ELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNG 281 ELVAKAIH S RA P + +NC+A+P + E+ELFGH KG+FTGA + GK E+A G Sbjct: 167 ELVAKAIHRRSKRANQPFIPINCSAIPNELFENELFGHEKGSFTGASNREIGKIELAGEG 226 Query: 282 TLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFR 341 TLFLDEIGE+ L +QAKLLRVLQ + RVG +++ RV++ATNR+L E V FR Sbjct: 227 TLFLDEIGEMPLFMQAKLLRVLQEREFFRVGGKELIKMRCRVISATNRNLEEMVENKEFR 286 Query: 342 ADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFP 401 DLF+R++V L +PPLRER +D+ LL F ++ + + A +L +Y +P Sbjct: 287 EDLFYRINVIHLKIPPLRERKEDIPLLVKKFIDKFSKINNKNVYDIDNDALEILMNYDWP 346 Query: 402 GNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATE 461 GNVR+LE+ I RAVVL + + P+ + + + +N Sbjct: 347 GNVRQLENIIERAVVLCQGEIITANHL--------PDRIKSNSQKISENIRSENNSLNLY 398 Query: 462 AFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 ++ I + L + + N A+ L L K GL Sbjct: 399 DIEKNIILKVLQEENFNQTRAAQKLGISRKQLRTKMKNFGL 439 >UniRef50_B4RA20 Sigma-54-dependent transcriptional regulator (Activator) protein n=13 Tax=Alphaproteobacteria RepID=B4RA20_PHEZH Length = 495 Score = 525 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 147/490 (30%), Positives = 224/490 (45%), Gaps = 30/490 (6%) Query: 38 CDASALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDP 97 + L+ D L L ++ A G + +A D +P Sbjct: 1 MAKTVLVVDDDPTQRRLIQAVLEREGFAVAHAESGDQAISRLASGAAADVVLLDLVMP-G 59 Query: 98 YDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGAL 157 G E + + I + + MQ D F ++ Sbjct: 60 ISGQDTLVEMRARGFSQPVIVVTATGGIDTV-VQAMQAGAVDFFVKPAAP---ERIIVSI 115 Query: 158 SNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGET 217 NAL + L+ + +IG SP M +K+ E A S + +LI+GE+ Sbjct: 116 RNALSMGALKGEVDRLKKHASG-RTTFDDLIGASPAMVMVKRLGERAARSSIPILITGES 174 Query: 218 GTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEM 277 G GKE++A+A+H +S RA P V +NC A+PE++ ES LFGH KG+FTGA GKF+ Sbjct: 175 GVGKEVIARAVHGSSDRAGKPFVAVNCGAIPENLVESILFGHEKGSFTGATDKHLGKFQE 234 Query: 278 ADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLA 337 A+ GTLFLDE+GEL L +Q KLLR LQ +I +G R ++VDVR+++ATNRDL + V Sbjct: 235 ANGGTLFLDEVGELPLDMQVKLLRALQESEIDPIGSKRSVKVDVRIVSATNRDLSQAVAE 294 Query: 338 GRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQH 397 GRFR DL++RL+VFP+ P LRER +D+ L F + + +G + V + L Sbjct: 295 GRFREDLYYRLNVFPIEAPSLRERKEDIPALVDAFIRRFNVEEGKAVVGAAPETLACLTG 354 Query: 398 YSFPGNVRELEHAIHRAVVLARATRSGDEVIL------------------------EAQH 433 + +PGNVR+LE+A++RA+VLA A Sbjct: 355 FDWPGNVRQLENAVYRAIVLADAPYLQPHDFPAISGIAAPPPEALAPKAVTASAPGPVPS 414 Query: 434 FAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANL 493 LP P+ + + + +R+ I+ A+ + + AR L + L Sbjct: 415 AGELAAELPQPQAPVPILDARGHIRPLDEIERDLIQHAIEVYSGHMSEVARRLGIGRSTL 474 Query: 494 HRLAKRLGLK 503 +R + GL+ Sbjct: 475 YRKVRENGLE 484 >UniRef50_B9M1N5 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Geobacter RepID=B9M1N5_GEOSF Length = 483 Score = 525 bits (1353), Expect = e-147, Method: Composition-based stats. Identities = 146/480 (30%), Positives = 221/480 (46%), Gaps = 25/480 (5%) Query: 41 SALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDG 100 + LL D I L + + + D +P G Sbjct: 3 AKLLILDDDPDILLMLKTVFHGEEMEVMLESESDAALKLILTERPNVAIFDISMP-GKSG 61 Query: 101 LIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNA 160 QE+ K+ + + + G ++ M+ +D + ++ A Sbjct: 62 FQVLQEAKKIDPGLSIIMTTGHKTTQN-AIEAMKFGAYDYVTK---PFDTNKLRSSVQKA 117 Query: 161 LLIEQLESQNMLPGD--ATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETG 218 L L + D E MIG S M ++ K + VA SD VLI GE+G Sbjct: 118 LECNLLNRKVRYTKDTNQLKLEEDADDIMIGSSAEMIEIWKMVGKVADSDATVLIQGESG 177 Query: 219 TGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMA 278 TGKEL+A+AI++ S R P + +NCAALPE++ ESELFGH KGAFT A + R GKFE Sbjct: 178 TGKELLARAIYDNSRRKNRPFLAVNCAALPEALLESELFGHEKGAFTDAHARRIGKFEQC 237 Query: 279 DNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAG 338 + GT+FLDEIGE+SLA Q KLLRVL+ + +RVG + +RVDVR++AATNR L V Sbjct: 238 NGGTIFLDEIGEMSLANQGKLLRVLECQEFERVGGNDTIRVDVRIIAATNRSLVTSVKEK 297 Query: 339 RFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHY 398 FR DLF+RL V +PPL++R +D+ LL F ++ + G + ++ +LL + Sbjct: 298 TFRMDLFYRLRVVNFFLPPLKDRAEDIPLLIDLFVKKFSRKYGKTIRRVAPETTDLLLKH 357 Query: 399 SFPGNVRELEHAIHRAVVLARATRSGDEVILE--AQHFAFPEVTLPTPEVAAVPVVKQNL 456 + GN+REL++ I+ A V ++ E + F EV L V + L Sbjct: 358 PWEGNIRELKNVINSATVFCKSDVLMPEDLESFLTAKAGFKEVDLDCAGDDYYEVFWKML 417 Query: 457 REATE----------------AFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRL 500 + ++ I A+ ++++N A++L L +R Sbjct: 418 EPVFDGICLKNKGTIYESVNMGLEKALIHMAMEKSNNNQVFAAKLLGISRNTLRDRLERY 477 >UniRef50_D2QLL9 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QLL9_9SPHI Length = 875 Score = 525 bits (1353), Expect = e-147, Method: Composition-based stats. Identities = 168/522 (32%), Positives = 254/522 (48%), Gaps = 41/522 (7%) Query: 9 ANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLAKDVLGRRF 68 I Q G ++ + +++ D A+ R + + A +A G F Sbjct: 359 LAIVNAFQNGKDSHAIIPQVAAIINELMPFDLLAVYRI--GRLLESAAIDMAVQKQGGVF 416 Query: 69 ALEGHPRL------------EAIARAGDVVRFPADSELPDPYD------GLIPGQESLKV 110 + +A+A + PA + D E+L + Sbjct: 417 VAITEKDVVPQTLADQASWKQALADMETWLVEPAINVGQQFVDIQQRSVVSRFYAEALGL 476 Query: 111 HACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQ----- 165 + + +P+F+ I AL L F L+ I+ A AL N E+ Sbjct: 477 KSSMYVPIFSKGKPIAALILASKAAYAFTPKDLCTLQDISVELALALENLSAYERIKVLS 536 Query: 166 --LESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKEL 223 LE + + ++IG S M + I VA +D VLI GETGTGKEL Sbjct: 537 EHLEQEKTYLAEEIKTSH-NFEEIIGTSSSMQTVFNAIGQVAPTDYTVLIMGETGTGKEL 595 Query: 224 VAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTL 283 +A+A+H S R P+V +NCAALP + ESELFGH +G+FTGA R GKFE+A+ GTL Sbjct: 596 IARAVHSLSARRDRPVVKINCAALPAQLIESELFGHERGSFTGATEKRIGKFELANGGTL 655 Query: 284 FLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRAD 343 FLDEIGEL L LQAKLLR +Q +I+RVG + ++ R++AATNR+L++EV AGRFR+D Sbjct: 656 FLDEIGELPLELQAKLLRAIQEKEIERVGGKGVILINTRIIAATNRNLQQEVAAGRFRSD 715 Query: 344 LFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGN 403 L++RL+VFP+ VPPLRER +D++ L +F ++ + G ++ + L Y +PGN Sbjct: 716 LYYRLNVFPIVVPPLRERQEDILPLTMHFLQKISKKLGKPITNIANASLQQLLQYPWPGN 775 Query: 404 VRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAF 463 +RELEH + R+ +L+++ L A AFP + + E ++ + Sbjct: 776 IRELEHVLERSSILSQSATLTLAEPLRAATTAFPPFVVQSSEEV----------KSIDDA 825 Query: 464 QRETIRQALAQNHHNW---AACARMLETDVANLHRLAKRLGL 502 R I ALA++ + A +L L K+L + Sbjct: 826 MRLAILAALAKSGNRIRGTGGAAELLNIKPTTLEARMKKLNI 867 >UniRef50_C1DXU0 Acetoacetate metabolism regulatory protein AtoC (Ornithine/argininedecarboxylase inhibitor) (Ornithine decarboxylase antizyme) n=8 Tax=Aquificales RepID=C1DXU0_SULAA Length = 451 Score = 525 bits (1353), Expect = e-147, Method: Composition-based stats. Identities = 147/462 (31%), Positives = 246/462 (53%), Gaps = 14/462 (3%) Query: 43 LLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLI 102 +L D + I + + D + + D LPD +GL Sbjct: 4 ILVVDDEKNIQDLMKDILTDEGYYVGTTGSITTAKDFIKKNSYDVIFLDVWLPDG-EGLD 62 Query: 103 PGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALL 162 + + + +G I + + ++ FD E L + Sbjct: 63 LLPFIKENSPNSSVVMISGHANI-PIAVKAIKEGAFDFL---EKPLSTETIMATIEKVEK 118 Query: 163 IEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKE 222 +++ + + ++IG SP + +LK++IE VA ++ V+I GE GTGKE Sbjct: 119 QIKVKQSLEYFKEKEEKQI----EIIGNSPKIVELKRQIEKVAKTNAWVMILGENGTGKE 174 Query: 223 LVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGT 282 LVAK+IH SPR P V +NCAA+P+ + E+E FG+ KGAFT A + + GK E+AD GT Sbjct: 175 LVAKSIHYQSPRKDYPFVDINCAAIPDELFEAEFFGYEKGAFTNAFTRKIGKLELADKGT 234 Query: 283 LFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRA 342 LFLDE+ ++SL+ QAKLLRVL+ R+G + + VD+RV++ATN+D+++EV G FR Sbjct: 235 LFLDEVADMSLSSQAKLLRVLEEKQFSRLGSNTKITVDLRVISATNKDIQKEVEKGTFRQ 294 Query: 343 DLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPG 402 DL RLSV P+ VPPLRER +D++LLA YF + + + +LS +N +Y++PG Sbjct: 295 DLAFRLSVIPIYVPPLREREEDILLLANYFLRKFSVENKVEPPILSDEVKNTFLNYNWPG 354 Query: 403 NVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEA 462 NVREL++ + R V+L + ++ + + + ++P+ + L++A E Sbjct: 355 NVRELKNLMERLVILNSESIIYNKDLPPHM-----LGNVKLEKEESIPITIRPLKDAKEE 409 Query: 463 FQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLKD 504 +++ I++AL ++N A+ L+ D+++L+R K+ L++ Sbjct: 410 LEKQMIKKALKVYNNNLKEIAKALDIDLSSLYRKIKQYNLEE 451 >UniRef50_UPI00016C3E44 probable response regulatory protein (atoC) n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C3E44 Length = 465 Score = 525 bits (1352), Expect = e-147, Method: Composition-based stats. Identities = 138/460 (30%), Positives = 212/460 (46%), Gaps = 18/460 (3%) Query: 42 ALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGL 101 L+ D + + L + A G + D ++ D GL Sbjct: 10 VLVIDDDKTLAETISESLDRRGHSCTVATGGKAGVAK-LEQEAFDVVLTDLKMAD-LHGL 67 Query: 102 IPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDE-ELRLIAALAAGALSNA 160 + ++ + + G + ++ M+ +L + A+ + Sbjct: 68 EVVERCKQLRPEAEVYVITGFADVKT-AVEAMKRGAAHYLQKPLDLAELRAVIENSAKRV 126 Query: 161 LLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTG 220 + +L Q E ++G SP M ++ + ++ A S +VLI GE GTG Sbjct: 127 GTLRELRRQ--------LDEKFGFEGVVGNSPKMQRVLQLLKAYAPSSASVLILGENGTG 178 Query: 221 KELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADN 280 K+L A+A+H PR P +NCA L ES+ +SE+FGH KGAFTGA R G+FE A Sbjct: 179 KDLAARALHTNGPRRTKPFTAMNCAGLTESLLDSEMFGHEKGAFTGADRQRVGRFEHAHG 238 Query: 281 GTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRF 340 GTLFLDEIG++ L+LQAKLLR L+ G++ RVG + L+VDVR++AATN+DL++EV AGRF Sbjct: 239 GTLFLDEIGDMPLSLQAKLLRALENGEVVRVGTNEPLKVDVRIIAATNKDLQKEVEAGRF 298 Query: 341 RADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSF 400 R DL+ RL V + +PPLRE +D+ L +F ++ R ++ + Y + Sbjct: 299 RQDLYFRLKVGTVKLPPLREHREDIPQLVSHFLKEFARRDNKPVPKVAPAVWKSFEGYDW 358 Query: 401 PGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREAT 460 PGNVREL + + +VL + E P Q + Sbjct: 359 PGNVRELRNLLASMMVLDLDGELTPDDFPED------PGVKPAGTAERPHGPDQLVGRPL 412 Query: 461 EAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRL 500 + +R I +AL N AR+L L+R + Sbjct: 413 DEVERYYIEKALDLTGGNREEAARLLNISERTLYRKIQEW 452 >UniRef50_A9FB29 Sigma-54 dependent DNA-binding response regulator n=15 Tax=Bacteria RepID=A9FB29_SORC5 Length = 461 Score = 525 bits (1352), Expect = e-147, Method: Composition-based stats. Identities = 154/466 (33%), Positives = 224/466 (48%), Gaps = 14/466 (3%) Query: 38 CDASALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDP 97 L+ D R L GL K + E + D D + Sbjct: 1 MTGRVLIVDDERGVCELLDAGLKKRGFRTAWRTSAAEAFE-LLGVEDFDVVVTDMTM-RG 58 Query: 98 YDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGAL 157 GL + ++ + + + + ++ +D + + Sbjct: 59 MSGLDLCERIVQNRPDLPVIVITAFGSLDT-ATSAIRAGAYDFVTK---PFELDALRLTV 114 Query: 158 SNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGET 217 AL L + A +A Q++ SP M + ++ +A SD ++LI+GE+ Sbjct: 115 ERALRHRALREEVRRLRRAV-ADARGYEQILSGSPVMRSVFDLLDRIADSDTSILITGES 173 Query: 218 GTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEM 277 GTGKELVA+A+H+ S R+ V +NCAA+P+++ ESELFGH +GAFT A RSG F Sbjct: 174 GTGKELVARAVHQRSRRSEGAFVAVNCAAVPDALLESELFGHARGAFTDAKGARSGLFAR 233 Query: 278 ADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLA 337 A GTLFLDEIGEL + LQ KLLR LQ ++ VG D L VDVR++AATNRDL + Sbjct: 234 AHGGTLFLDEIGELPIGLQPKLLRALQERVVRPVGADEELPVDVRLIAATNRDLETAIEE 293 Query: 338 GRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQH 397 RFR DL++R++V + +PPLR RG DV+LLA +F E + LSA A L Sbjct: 294 RRFREDLYYRINVVHVDLPPLRSRGADVLLLAQHFLEHFATVKARPIQGLSAPAAEKLMA 353 Query: 398 YSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLR 457 Y++PGNVREL++ I RAV LAR + + E L + + V Sbjct: 354 YAWPGNVRELQNCIERAVALARYDHITVDDLPEKIRTYRRSHVLVSSDDPTELVP----- 408 Query: 458 EATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 E +R I + L N + A++L D A L+R +R G++ Sbjct: 409 --MEEVERRYILRVLEVVGGNKSQAAQILGFDRATLYRKLERYGMR 452 >UniRef50_B5EIR5 Transcriptional regulator, NifA subfamily, Fis Family n=6 Tax=Bacteria RepID=B5EIR5_GEOBB Length = 664 Score = 524 bits (1351), Expect = e-147, Method: Composition-based stats. Identities = 153/506 (30%), Positives = 252/506 (49%), Gaps = 43/506 (8%) Query: 20 GHQDRFQRLITTLRQVLECDASALL--RYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLE 77 + ++ + + L + S++ D L + P Sbjct: 163 EVDRKIEKALQKVVNFLGFERSSIWHFTPDRSSLRITHSYALPGVKPPPTELMNLIPIWI 222 Query: 78 AIARAGDVVRFPADSELPDPYDGLIPG-QESLKVHACVGLPLFAGQNLIGALTL--DGMQ 134 + + G+ R EL D + ++ + + + +P G ++GA+T ++ Sbjct: 223 EMIQLGESFRVSDVEELSDKFWREKQYCKDQGGIKSIMFIPASVGGTIVGAITFVSYSVK 282 Query: 135 PDQFDVFSDEELRLIAALAAGALSNAL--------------LIEQLESQNMLPGDATPFE 180 + D + + LRL+ + A AL L ++LE++N+ D E Sbjct: 283 KEWPDELT-QRLRLLWEVFANALERKRADQKIQNALAEIRQLKDRLEAENVYLRDQIDVE 341 Query: 181 AVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLV 240 K ++IG S + + ++I+ VA +D VLI GETGTGKEL+A+AIH A R ++ Sbjct: 342 -YKHEEIIGKSEAIRNVLQQIQQVAPTDSTVLILGETGTGKELIARAIHNAGQRKARAMI 400 Query: 241 YLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLL 300 +NCAALP ++ E+ELFGH KGA+TGA+S++ G+FE A+ T+FLDEIGEL L LQ+KLL Sbjct: 401 KVNCAALPAALIEAELFGHEKGAYTGAVSSQIGRFEAANGSTIFLDEIGELPLELQSKLL 460 Query: 301 RVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRE 360 RV+Q G +R+G+ + ++ DVRV+AATN L++ V G+FR DL++RL+VFP+ VPPLR+ Sbjct: 461 RVIQEGQFERLGNSKPVKADVRVIAATNVSLKQAVKEGKFREDLYYRLNVFPIFVPPLRD 520 Query: 361 RGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARA 420 R +D+ LL E+ G + + +++ Y +PGN+REL + + RA++L+ Sbjct: 521 RQEDIPLLVWAMVEEFSKVFGKTIERIPRKNMEIMERYLWPGNIRELRNLVERAMILSNG 580 Query: 421 TRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHN-- 478 +++ N EA +R+ I L + Sbjct: 581 GTLVVDIL-------------------DGSAAAANEPMTMEAAERKHIGFILEKTGWRIR 621 Query: 479 -WAACARMLETDVANLHRLAKRLGLK 503 A +L+ LH K+LG+K Sbjct: 622 GKGGAAEILDMKPTTLHSRIKKLGVK 647 >UniRef50_D0KWC0 Transcriptional regulator, NifA subfamily, Fis Family n=2 Tax=Chromatiales RepID=D0KWC0_HALNC Length = 539 Score = 524 bits (1351), Expect = e-147, Method: Composition-based stats. Identities = 147/520 (28%), Positives = 244/520 (46%), Gaps = 22/520 (4%) Query: 4 SVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSR--QFIPLAIDGLAK 61 + ++ + + + ++ + Q++ + + D GL Sbjct: 18 ELLIIYEASRLMTHNGTADEAINGILRLMSQMIGLNRGRVTLKDDDMDTLSIRYSYGLTP 77 Query: 62 DVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDG-LIPGQESLKVHACVGLPLFA 120 R + G + + V + P + G + A + +P+ Sbjct: 78 PERARGHYVIGEGVTGRVMQTRQVAVVQNIDDEPVYLTRAVERGTLPQETVAFLAVPILY 137 Query: 121 GQNLIGALTLDGMQPDQFDV-FSDEELRLIAALAAGALSNALLIEQ----LESQNMLPGD 175 +G L ++ + L+++A L A LS + LIE+ L +N Sbjct: 138 NNTPLGVLGAHRLRGRKRPFSRDINLLQVLATLIAQILSLSRLIEEKTALLADENRALKQ 197 Query: 176 ATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRA 235 A + ++G SP + ++ V+ + VL++GE+GTGKE A+ +H S Sbjct: 198 ALDQKTEGTHGILGESPALRHALRQALHVSPTQATVLLTGESGTGKERFARLVHITSQLR 257 Query: 236 VNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLAL 295 P + +NCAA+PE++ ESELFGH KGAFTGA+ + G E+A+NGTLFLDEIG+L+L L Sbjct: 258 DGPFMAINCAAIPEALLESELFGHEKGAFTGAVVKKQGIIELANNGTLFLDEIGDLALDL 317 Query: 296 QAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSV 355 Q+KLL VL+ I+RVG + + V+VR++AAT+++L++ V G+FR DLF+RL+VFP+ + Sbjct: 318 QSKLLHVLEKRAIKRVGGTQDIPVNVRIIAATHKNLQKAVNEGQFRIDLFYRLNVFPIHL 377 Query: 356 PPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAV 415 PPLRERG DV LA +F ++ + V G L Y++PGN+R+LE+ + RAV Sbjct: 378 PPLRERGGDVSHLARHFLQRANHEFDRNTV-FGPGVLERLDGYNWPGNIRQLENIVKRAV 436 Query: 416 VLARATRSGDEV--ILEAQHFAFPEVTLPTPEVAAVPVVKQNLRE-----------ATEA 462 ++A+ + ++ E + P+ +L A Sbjct: 437 LIAQNREITIDDVILILQHESHIGEHLEAGSTKSVAPIEPPSLPSKSHQPTQRGYGWVRA 496 Query: 463 FQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 + + + AL Q N A L +RLGL Sbjct: 497 DETQGLLDALRQTGGNKTRAAMTLGMTPRQFRYRLERLGL 536 >UniRef50_B4UAL8 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Anaeromyxobacter RepID=B4UAL8_ANASK Length = 461 Score = 524 bits (1350), Expect = e-147, Method: Composition-based stats. Identities = 158/471 (33%), Positives = 232/471 (49%), Gaps = 15/471 (3%) Query: 36 LECDASALLRYDSRQFIP-LAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSEL 94 + + +L D + I + L + A G LE +A D L Sbjct: 1 MNSTPARILVVDDEKLIRWSVAERLQRGGYEVLSAESGEQALEMVAAT-PPDVMLLDVRL 59 Query: 95 PDPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEE-LRLIAALA 153 P DG+ Q +L +H V + + + + + + ++ M+ D + + Sbjct: 60 P-GIDGVQTLQRALSLHPEVAVLMMSAHSTVD-IAVEAMKHGAIDFLVKPFPFQQLDEAV 117 Query: 154 AGALSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLN-VL 212 AL+N Q+ + A+ EA ++G S M Q++ I +A SD VL Sbjct: 118 ERALANVRTRRQIATLTSDKRGASAVEA-----VVGSSAAMEQVRSMISRLAGSDTTTVL 172 Query: 213 ISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRS 272 I GE+G+GKE+VA+AIH S RA P++ +NCAALPE + ESELFGH +GAFT A + + Sbjct: 173 IEGESGSGKEVVARAIHFRSARADKPILQVNCAALPEHLLESELFGHERGAFTDAHAQKR 232 Query: 273 GKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLR 332 G FE A+ G++ LDEIG+L QAKLLR+L+ +RVG + LR DVRV+AATN +L Sbjct: 233 GLFETAEGGSVMLDEIGDLPPGGQAKLLRLLENKTFRRVGGVQELRADVRVIAATNVNLE 292 Query: 333 EEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGAR 392 E V GRFRADLF RL+V + VPPLRE DDV +L +F + ++ A Sbjct: 293 ERVAEGRFRADLFFRLNVVRIVVPPLREHLDDVPILTAHFVARFDQEMKRQVKGVAPAAM 352 Query: 393 NLLQHYSFPGNVRELEHAIHRAVVLARA-TRSGDEVILEAQHFAFPEVTLPTPEVAAVPV 451 LL+ Y +PGNVREL + I RA +L E + PE V Sbjct: 353 ELLRAYHWPGNVRELRNVIERAFILHAGADEIRPEHLPPELR-KAAAPGGKRPEKLVPQV 411 Query: 452 VKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 + L + +R+ I +A+ + N + AR+L L K+ G+ Sbjct: 412 TGEGL--VLDDVERKLIAEAMERASGNQSKAARLLGVSRDTLRYRLKKHGM 460 >UniRef50_Q3A5A0 Two component, sigma54 specific, transcriptional regulator, Fis family n=6 Tax=Deltaproteobacteria RepID=Q3A5A0_PELCD Length = 470 Score = 524 bits (1350), Expect = e-147, Method: Composition-based stats. Identities = 148/471 (31%), Positives = 225/471 (47%), Gaps = 18/471 (3%) Query: 40 ASALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYD 99 S LL + + + + V + + + +V D P + Sbjct: 6 RSVLLVHKDPKERSELAVAIRRTVDCTVLESDSPAEALKLLQDDEVSVILTDLFAPS-NE 64 Query: 100 GLIPGQESLKVHA----CVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAG 155 GL +++ + ++ VG+P+ + L+ ++ F + Sbjct: 65 GLELLKKASQHNSQIVTIVGVPVDHRG-----MALESLRRGAFFCLNT---PYNHEETII 116 Query: 156 ALSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEI-VAASDLNVLIS 214 A S AL L ++ + ++ +IG +P M QL IE A D +VL+ Sbjct: 117 ATSRALQHHDLLTKGEIKARKFR-KSDGFHGIIGQAPKMRQLFNNIEKLAAEGDSSVLVL 175 Query: 215 GETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGK 274 GE+GTGKELVA+AIH PR+ V +NCAA+PE + ESELFG+VKGAFTGA + G+ Sbjct: 176 GESGTGKELVARAIHAHGPRSRKNFVPVNCAAIPEDLLESELFGYVKGAFTGATQAKMGR 235 Query: 275 FEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREE 334 + A+ GTLFLDEIG++ +LQAKLLRVLQ + + VG + + VDVR++AAT+RDL + Sbjct: 236 LQYAEGGTLFLDEIGDMKASLQAKLLRVLQEKEFEPVGGVKPVSVDVRIVAATHRDLEKS 295 Query: 335 VLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNL 394 V GRFR DL++RL+V PL +PPLR+R +D+ LL F ++ S A Sbjct: 296 VAEGRFREDLYYRLNVIPLQIPPLRKRKEDISLLIERFVGIYNRKKKNPFKGFSDDALQA 355 Query: 395 LQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVA---AVPV 451 L+ Y +PGNVRELE+ + R + + + E P E ++ Sbjct: 356 LKQYPWPGNVRELENLVQRMSIFFAGQSVSRKDLPEKYQGCDEAQQQPVQEQENSISLED 415 Query: 452 VKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 + F+ + I QAL N A++L L KR + Sbjct: 416 GGVDFNLLVNRFENQLILQALNVTGGNKREAAKLLNLKRTTLIEKLKRKNI 466 >UniRef50_Q2LRZ0 Sigma-54 dependent transcriptional regulator n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LRZ0_SYNAS Length = 473 Score = 523 bits (1349), Expect = e-147, Method: Composition-based stats. Identities = 136/475 (28%), Positives = 208/475 (43%), Gaps = 15/475 (3%) Query: 36 LECDASALLRYDSRQ-FIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSEL 94 +E + +L D + L A G L+ R G D + Sbjct: 1 MEMKEARILVVDDDTSMRMALCETLESCGYCIETASNGLEALKK-FRKGAFEAVITDMRM 59 Query: 95 PDPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAA 154 P G+ + K+ + L + ++ M+ D Sbjct: 60 P-GMGGMEVLKTIKKISPESPVILITAYGTVNT-AVEAMKEGASDFIMK---PFSLEDIE 114 Query: 155 GALSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLIS 214 + N + E + ++I + + + ++ VA S +VLI Sbjct: 115 FVVKNVMATY--EEKEFRESKPVEKMTFTDREIITEDEKILGILEFLKTVAQSKSSVLIQ 172 Query: 215 GETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGK 274 GE+GTGKEL A+ ++ S R P V +NCAA+P+++ ESE+FG KGAFTGAI + GK Sbjct: 173 GESGTGKELFARYLYLHSSRRHMPFVAINCAAIPDNLLESEMFGFEKGAFTGAIQRKVGK 232 Query: 275 FEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREE 334 FE+A+ GTL LDE+ E++ LQAKLLRV+Q +I R+G L VDVR++A TN D+R+ Sbjct: 233 FELANGGTLLLDEVTEMTPHLQAKLLRVIQEKEIDRLGGKMPLPVDVRIIATTNADVRKC 292 Query: 335 VLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNL 394 + FR DL++RL+V PL +PPLRER DV LL YF ++ V + G Sbjct: 293 IEEKTFREDLYYRLNVIPLKIPPLRERKGDVELLGSYFLKKYSNLNEKPLPVFANGTLKR 352 Query: 395 LQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVV-- 452 L Y +PGNVRELE+ I RAV++ E + + + V Sbjct: 353 LNAYDWPGNVRELENVIERAVLVCGGNVVLPEHLYLEDQGSVSPAAEEKTSCSLEEVSTD 412 Query: 453 ----KQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 + ++E I L + N + +L V + + +K Sbjct: 413 ISGIDLSRGMTIWEMEKELIFSTLDKVKGNKTRASEILGISVRTMRNKLQEYQMK 467 >UniRef50_C0ZKW7 Two-component response regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZKW7_BREBN Length = 459 Score = 523 bits (1349), Expect = e-147, Method: Composition-based stats. Identities = 147/468 (31%), Positives = 234/468 (50%), Gaps = 10/468 (2%) Query: 36 LECDASALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELP 95 + D L+ D F L L + A +G + + + + D ++P Sbjct: 1 MHTDTRILIVDDEADFRHLLTSRLKRKGYTTLEASDGISA-QKLVTSETIHVILLDLKMP 59 Query: 96 DPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAG 155 DGL Q + + + + G I ++ M+ +D + Sbjct: 60 -GMDGLSFLQWCKETSPAIQIIVVTGHGTIET-AIEAMKRGAYDYLTK---PYNLNELEV 114 Query: 156 ALSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISG 215 +S A+ +QL +N +A Q++ SP + ++ + VA++D VL+ G Sbjct: 115 LISKAVEKQQLTEENQQLREALSTNGKTTFQIVAESPKLKEVLATAKRVASTDFLVLLKG 174 Query: 216 ETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKF 275 E+GTGK+++A+ I+E S RA V +N A+PE++ ESELFGH KGAFTGA + + G Sbjct: 175 ESGTGKDVIARLIYEYSERASKAFVPINLGAIPETMLESELFGHEKGAFTGATAQKKGLV 234 Query: 276 EMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEV 335 E+A GTLFLDE+G+L LQ KLLR L+ G+ +R+G +VDVR++AATN DL ++V Sbjct: 235 EIAHQGTLFLDEVGDLPFPLQVKLLRFLETGEFRRIGSPILHKVDVRIIAATNADLEKKV 294 Query: 336 LAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLL 395 G FR+DL+ RL V +++PPL +R +D++ L+ +F + + + LS A+ L Sbjct: 295 EEGTFRSDLYFRLHVMDITIPPLTQRSEDILPLSAFFLNRLKRKY--PVKPLSVKAQAAL 352 Query: 396 QHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQN 455 YSFPGNVREL H I RAVVLA+ D+ + + + +A ++ Sbjct: 353 LAYSFPGNVRELAHMIERAVVLAKGEEIDDKDLFPHEQPVPSNPSDRKLTTSAETGEEEA 412 Query: 456 LREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 + +RE I+ L + N A L V NL+R + L+ Sbjct: 413 F--LLKNVEREHIKHVLDVSQWNKTKTAEKLGISVRNLYRKIEEYELR 458 >UniRef50_D2QZ64 Transcriptional regulator, NifA subfamily, Fis Family n=2 Tax=Planctomycetaceae RepID=D2QZ64_9PLAN Length = 677 Score = 522 bits (1346), Expect = e-146, Method: Composition-based stats. Identities = 161/505 (31%), Positives = 243/505 (48%), Gaps = 17/505 (3%) Query: 8 LANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDG---LAKDVL 64 L +A EL ++ L + + DA + A D ++ Sbjct: 175 LCRLAFELASQPDLAAVAHLALSGLFESTQVDAGGVWLLPRGNASNSAADLSLVASRTDR 234 Query: 65 GRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFAGQNL 124 + + R G+ V + + + P+ + + Sbjct: 235 LPSYHRLSAFLAATVLRDGEAVLARNIEGDSQLASR--DSKGEFHTTSVLCAPIRLEKKV 292 Query: 125 IGALTLDGMQPDQF-DVFSDEELRLIAALAAGALSNALLIEQLES---QNMLPGDATPFE 180 +G + L + D E +A A A+ N ++L Q + Sbjct: 293 VGMIHLYSTDSARVPDPDDLEFTLAVADNVALAVRNLHRQQELAENLLQTRTEVQQLRKQ 352 Query: 181 AVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLV 240 +++++G S ++ ++++I A S VLI GE+G GKELVA+A+H +SPR P V Sbjct: 353 LGAESELVGSSEVLSSVQRQIARAAPSRATVLIRGESGVGKELVARAVHYSSPRKRGPFV 412 Query: 241 YLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLL 300 LNCAAL ES+ ESELFGH KGAFTGA + GKFE A GTL LDEIGE+S ++QAK L Sbjct: 413 CLNCAALSESLLESELFGHEKGAFTGATDRKIGKFESAHQGTLMLDEIGEMSPSIQAKFL 472 Query: 301 RVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRE 360 RVL+ +RVG + ++VDVRV+AATNRDL + V G FR DL+ RL+V + VPPLR+ Sbjct: 473 RVLEGHPFERVGGSQPIKVDVRVIAATNRDLEKAVAEGAFRRDLYFRLNVVEIQVPPLRK 532 Query: 361 RGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARA 420 R +D+I LA +F ++ G S A LQ Y +PGNVREL++ I RAVVL+R Sbjct: 533 RPEDIIELAHFFLQRFNAETGRKLRGFSPAATERLQQYRWPGNVRELKNVIERAVVLSRG 592 Query: 421 TRSGDEVI-LEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNW 479 E + L A P+P+ + VP+ + + ++ I L + + Sbjct: 593 DVVEPEDLHLSNLATASESGDNPSPKTSFVPM-------SLDDIEKRHILATLKATNWHK 645 Query: 480 AACARMLETDVANLHRLAKRLGLKD 504 + A +L + + L R +R L + Sbjct: 646 SRAAAILGVERSTLDRKIRRYELNE 670 >UniRef50_Q01S08 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01S08_SOLUE Length = 509 Score = 522 bits (1346), Expect = e-146, Method: Composition-based stats. Identities = 160/509 (31%), Positives = 245/509 (48%), Gaps = 17/509 (3%) Query: 1 MSFSVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLA 60 ++ + + I+ ++ + + +L+CD +++ D + L Sbjct: 9 LNERLAAILAISQKMNSQRDLSELLDLIAREATSLLDCDRASIFLLDRDTNELWSKVALG 68 Query: 61 KDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFA 120 D + R AR GD + P Y G+ G+ + + + + Sbjct: 69 SDEILR--FEASRGIAGNAARTGDTINVRDAYSDPRFYTGI-DGKTGYRTRNLLAVAVRN 125 Query: 121 -GQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPF 179 +IGA + F +E L +A+ AA A+ A LI +L Sbjct: 126 QRGEIIGAFEALNKRVGVFTARDEESLAALASHAAVAIETAQLIGELRRNQDELAQQNAH 185 Query: 180 ------EAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASP 233 ++G + Q+ + +E + S +NVLI+GETGTGKEL AKAIH SP Sbjct: 186 LWREVESRYATHGIVGSGQRIQQVVRLVERIRDSVVNVLITGETGTGKELAAKAIHYNSP 245 Query: 234 RAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSL 293 R P V LNCAALPE++ ESELFG KG TG +++R G+F+ AD GTLFLDEIG+LSL Sbjct: 246 RVRKPFVALNCAALPETLLESELFGIEKGVATG-VNSRVGQFQKADGGTLFLDEIGDLSL 304 Query: 294 ALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPL 353 QAK+LRVLQ ++RVG + VDVR+LAATN+DL E+ G FR DL++R+ V + Sbjct: 305 TAQAKILRVLQERVLERVGGRAPIAVDVRLLAATNKDLEAEIAKGNFREDLYYRIKVIHI 364 Query: 354 SVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHR 413 +PPLRE +++ LLA +F ++ G + + L + +PGNVR+L + + R Sbjct: 365 HMPPLREIREEIPLLARHFLKEYCRETGREAMEFAPDVMRKLVNSPWPGNVRQLRNEVTR 424 Query: 414 AVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALA 473 AR + +E + E V A PV Q+L++A + I +AL Sbjct: 425 LAACARLSLIEEEDLWEGIPLVARHV------PTAEPVKLQSLKKAVAEMEGRMIAEALQ 478 Query: 474 QNHHNWAACARMLETDVANLHRLAKRLGL 502 + +N A++L L KR + Sbjct: 479 ETRNNQQQAAKLLGLSRQGLINKMKRYAI 507 >UniRef50_C1A631 Putative NtrC family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A631_GEMAT Length = 472 Score = 522 bits (1345), Expect = e-146, Method: Composition-based stats. Identities = 163/474 (34%), Positives = 238/474 (50%), Gaps = 21/474 (4%) Query: 41 SALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDG 100 S L+ D + L+ + R A +G L A+A + D +P DG Sbjct: 3 SVLIVDDEPNIRRMVGALLSSEGYDVRDASDGSTGL-ALAETSEPDVALIDLMMPGDLDG 61 Query: 101 LIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNA 160 L ++ + + + + +G+ + + + F E L AL++A Sbjct: 62 LGLLEKLRERRPDMPVVMMSGRAAL-TDAVRATRLGAFTFL---EKPLTPEGVLLALASA 117 Query: 161 LLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTG 220 + Q + +MIG SP M ++ + V +D VLI+GE+GTG Sbjct: 118 FELRQARRAAAALREDLGIS----GEMIGDSPAMRDVRALLARVGPTDARVLITGESGTG 173 Query: 221 KELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADN 280 KEL A A+H +S R P V +NCAA+P + ESE+FGH +GAFTGA R G+FE+A Sbjct: 174 KELAAAALHVSSARRDRPFVRVNCAAIPRDLVESEMFGHERGAFTGATERRIGRFELAHT 233 Query: 281 GTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRF 340 GTLFLDE+G+L QAKLLR ++ +I+RVG + ++VDVR+LAATN+DL V G F Sbjct: 234 GTLFLDEVGDLGAEAQAKLLRAIEAREIERVGGGKPIKVDVRILAATNKDLTRAVADGSF 293 Query: 341 RADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSF 400 R DLF RL+V P+ +PPLR+R D+ L +F + R R G V A L Y + Sbjct: 294 REDLFFRLNVIPIHLPPLRDRPGDLPALVRHFSARHRTRTGRPLVQWHESALGALSAYRW 353 Query: 401 PGNVRELEHAIHRAVVLARATRSG----DEVILEAQHFAFPEVTLPTPEVAAVPVVKQ-- 454 PGN+REL + + R +L + +V+ E +P+ A V Sbjct: 354 PGNIRELANVVERLAILHAGSEVTRTEVRQVLPETAALPGATSAVPSGTEAGTEVDTPDP 413 Query: 455 ------NLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 L +A +A++R I ALAQ+ N A AR L+TD NL+R +RLGL Sbjct: 414 ASAAHMPLSDALDAYERRLISAALAQSDGNVAEAARRLQTDRPNLYRRMRRLGL 467 >UniRef50_C7PEX2 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PEX2_CHIPD Length = 653 Score = 522 bits (1345), Expect = e-146, Method: Composition-based stats. Identities = 141/407 (34%), Positives = 212/407 (52%), Gaps = 16/407 (3%) Query: 104 GQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLI 163 + L+++A + + + + ++ D + L + L Sbjct: 249 LSDHLRLNARLAIAVTLPAGNLAVISFYSRNADTYTEELFTLLGRMENGIRQLLEQIQQK 308 Query: 164 EQLESQNMLPGDATP----FEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGT 219 S ++ V ++G SP + I +V+A+ +VLI GE+GT Sbjct: 309 NDALSARIVARKRVEKPLIDNEVLFEGIVGRSPVFLSVLHSINMVSAAPSSVLILGESGT 368 Query: 220 GKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMAD 279 GKEL+A+ IH SPR PL+ +NCAALP + ESELFGH KGAFTGA R+GKFEMAD Sbjct: 369 GKELIARCIHRQSPRKNKPLITVNCAALPAELIESELFGHEKGAFTGATDKRAGKFEMAD 428 Query: 280 NGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGR 339 GT+FLDEIGEL + Q KLLRVLQ + +RVG + ++VDVRV+AATNR+L +EV GR Sbjct: 429 GGTIFLDEIGELPIESQVKLLRVLQEKEFERVGGSKVIKVDVRVIAATNRNLEKEVAEGR 488 Query: 340 FRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYS 399 FR DL++RL+VFP+ +P LRER +D+ LLA +F ++ + + +S A L+ Y Sbjct: 489 FRLDLYYRLNVFPVELPSLRERKEDIPLLAQHFVDKLSEKLSRNITDISPDALKALRSYD 548 Query: 400 FPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREA 459 +PGN+RE+EH + R++++ T ++ P + N + Sbjct: 549 WPGNIREMEHVMERSLLMTTGTILKQIMLP---------KMAAQPVGTTISSADGNRIKT 599 Query: 460 TEAFQRETIRQALAQNHHN---WAACARMLETDVANLHRLAKRLGLK 503 E + E I Q L A +L + L+ ++LG+K Sbjct: 600 LEEMEIEHILQVLKSCKGKVCGVGGAAELLGLPPSTLNSKIRKLGIK 646 >UniRef50_C6VVC1 Sigma54 specific transcriptional regulator, Fis family n=3 Tax=Sphingobacteriales RepID=C6VVC1_DYAFD Length = 650 Score = 522 bits (1345), Expect = e-146, Method: Composition-based stats. Identities = 140/416 (33%), Positives = 211/416 (50%), Gaps = 21/416 (5%) Query: 97 PYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGA 156 P LI G+ ++ + + + + +PD F E + A Sbjct: 242 PLKKLIAGKFDMRSNLVMPIANISIDGKQFFFCFYSRRPDAFGEQDLELCARLQPAIESA 301 Query: 157 LSNALLIEQLESQNMLPGDA------TPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLN 210 + + +M A + E+ M+G S M + I VA SD + Sbjct: 302 IRKMIRAASTSGPDMELDHAIEVMAGSRSESPVFDSMVGQSHLMLNILDLISQVAPSDTS 361 Query: 211 VLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISN 270 VLI+GE+GTGKE VA IH+ SPR P V +NCAALP ++ ESELFGH KGAFTGA Sbjct: 362 VLITGESGTGKEHVADTIHQLSPRKSKPFVKVNCAALPINLIESELFGHEKGAFTGATER 421 Query: 271 RSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRD 330 R G+FE AD GT+FLDEIG++ L +Q KLLRVLQ +I+RVG + +++++RV+ ATNR+ Sbjct: 422 RIGRFEQADGGTIFLDEIGDMPLEVQVKLLRVLQQREIERVGGTQPIKINIRVITATNRN 481 Query: 331 LREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAG 390 L + G+FR D+++RL+VFP+++P LRER +D+ L +F + G + +S Sbjct: 482 LERAIAEGKFRLDIYYRLNVFPIAMPALRERTEDIAPLVHHFIGYFGRKTGKNISGISDR 541 Query: 391 ARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVP 450 A +L Y +PGN+RELE+ I R+V+LA+ + P V + Sbjct: 542 ALAMLMDYGWPGNIRELENVIERSVLLAKGNSIDTVYLP------------AHPAVEGIA 589 Query: 451 VVKQNLREATEAFQRETIRQALAQNHHNWA---ACARMLETDVANLHRLAKRLGLK 503 + + +R+ I L + A++L L K+LG+K Sbjct: 590 KAGPPVLKNIFENERDHIISVLKACEGRISGENGAAKILAIPPTTLSSKMKKLGIK 645 >UniRef50_C1F0X6 Sigma-54 dependent transcriptional regulator, Fis family n=3 Tax=Bacteria RepID=C1F0X6_ACIC5 Length = 781 Score = 521 bits (1344), Expect = e-146, Method: Composition-based stats. Identities = 162/511 (31%), Positives = 251/511 (49%), Gaps = 31/511 (6%) Query: 6 DVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFI----PLAIDGLAK 61 +LA +++ + G+ Q + +++++++ D +++ D + + L+ G + Sbjct: 284 ALLAELSVSVLPGLKIQQMLHAVASSMQRIVAHDYASITLLDQSKNVLHSYILSAAGDSG 343 Query: 62 DVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFAG 121 + A E P A+ + + P+ + P D L S +HA LPL Sbjct: 344 PEMELSVAPESSPE-AAVLHTHEALFLPSLQDSSFPQDALRHALSS-GIHAAWWLPLVHE 401 Query: 122 QNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATP--- 178 + GAL + P + S L +AA A + QL +Q + Sbjct: 402 GRVAGALCIGVRNPKTLEHVSRHTLTQMAAQIALTIQGINAARQLSAQTQKLKEEKRYLE 461 Query: 179 ---FEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRA 235 +++G + ++ K++E VA +D LI GETGTGKEL+A+AIH S R Sbjct: 462 EELRTEYSFEEIVGNGESLRRVLKQVETVAPTDATTLILGETGTGKELIARAIHNLSARD 521 Query: 236 VNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLAL 295 + V +NC+++P + ESELFGH KGAFTGAI R G+ E+A GTLFLDEIG+L L L Sbjct: 522 GHTFVKVNCSSIPTGLLESELFGHEKGAFTGAIQQRIGRLELAHQGTLFLDEIGDLPLDL 581 Query: 296 QAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSV 355 Q KLLR LQ +I+R+G R + VD R+LAAT+RDL V G+FR+DL++RL VFP+ + Sbjct: 582 QPKLLRALQEKEIERLGGRRTIPVDFRLLAATHRDLARMVKDGQFRSDLYYRLKVFPILL 641 Query: 356 PPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAV 415 PPLR+R +D+ L YF + R + + L + +PGN+RELE+ + RAV Sbjct: 642 PPLRQRREDIPELVNYFVAKHARRMNKHIEEIPEPVMSALVRWHWPGNIRELENFLERAV 701 Query: 416 VLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQN 475 +L R P + P E+ + + + EA +R I Q L Sbjct: 702 ILTRG----------------PLLRAPLSELQELNIETDEPQSTLEAAERAHILQVLRDC 745 Query: 476 HHNW---AACARMLETDVANLHRLAKRLGLK 503 A L L+ K+LG++ Sbjct: 746 DGVIAGAGGAAERLGLKRTTLNSRMKKLGIE 776 >UniRef50_Q1DDD5 Sigma-54 dependent DNA-binding response regulator Nla19 n=6 Tax=Myxococcales RepID=Q1DDD5_MYXXD Length = 482 Score = 521 bits (1344), Expect = e-146, Method: Composition-based stats. Identities = 166/472 (35%), Positives = 234/472 (49%), Gaps = 15/472 (3%) Query: 40 ASALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYD 99 LL D ++ + L + F A +G + D ++ +P D Sbjct: 10 RGRLLVVDDQRNMRATTALLLRAENYTVFEAATGEEALAQLASGSIDLLLTDLKM-EPMD 68 Query: 100 GLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSN 159 GL + +L+V + + + I + ++ M+ +D + + + Sbjct: 69 GLTLLRRALEVAPRLQVIMMTAFGSIES-AVEAMRLGAYDYVTKPFKE---SELRYRVER 124 Query: 160 ALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGT 219 AL +L+ + + ++G S M +L + VA SD VLI GE+GT Sbjct: 125 ALERARLQRDVDNLTTDFN-QRHGLSALVGRSAAMRELTTRLMRVAQSDATVLIQGESGT 183 Query: 220 GKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMAD 279 GKELVA+A+H S R V +NCAA+ ES+ ESELFGH KGAFTGA+ +R G FE AD Sbjct: 184 GKELVARALHAHSRRKARSFVPVNCAAISESLLESELFGHAKGAFTGAVKSRRGLFEEAD 243 Query: 280 NGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGR 339 GTLF+DE+ E S Q+KLLR LQ G+++RVG+ LRVDVR++AATNRD+ EV R Sbjct: 244 GGTLFIDEVTETSPTFQSKLLRALQEGEVRRVGESTALRVDVRIVAATNRDIELEVRDKR 303 Query: 340 FRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYS 399 FR DL++RL+V L VPPLRER +DV LA +F E+ R + LSA A + L Y Sbjct: 304 FRQDLYYRLNVVALRVPPLRERLEDVPALAEHFLERANARSP-NPKRLSAAAVSHLMSYG 362 Query: 400 FPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPT--------PEVAAVPV 451 FPGNVRELE+ + +A LA E Q P P+ + Sbjct: 363 FPGNVRELENLVEQAAALAEGDELLPEDFPVRQGRMTPAHGTPSVAFLDGQGGALGRNAS 422 Query: 452 VKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 L + E +R I QAL ++ + A A L L R KRL L+ Sbjct: 423 AGPTLAQVVEEAERHAITQALERHGVDLARVADELGVSSTTLWRKMKRLNLR 474 >UniRef50_A9EN62 Sigma-54 dependent transcriptional regulator n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9EN62_SORC5 Length = 648 Score = 521 bits (1343), Expect = e-146, Method: Composition-based stats. Identities = 165/525 (31%), Positives = 248/525 (47%), Gaps = 35/525 (6%) Query: 2 SFSVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLAK 61 ++ + + + + + ++ + P A Sbjct: 135 PSALSAMYAAQKRIGAANDLDEVLAEIADAVLALVPSSTHVTVVLRDDDQEPGAAPAAFV 194 Query: 62 DVLGRRFALEGHP------------RLEAIARAGDVVRFPADSELPDPYDGLIPGQESLK 109 VL R + G + + V G Sbjct: 195 PVLTRVRSASGKGGPPAGPVPITRSVYRKVIKERAAVLAADAPIEV----GQSESLMGAS 250 Query: 110 VHACVGLPLFAGQNLIGALTLDGMQ-PDQFDVFSDEELRLIAALAAGALSNALLI----- 163 + + + +PL+ G+ +IG L D P + E L ++AA A+ A++NA LI Sbjct: 251 IRSTLAVPLWKGEEIIGVLQADNRSVPGMLNAGDLETLLVLAANASLAVANARLIKRLVL 310 Query: 164 --EQLESQNMLPGDATPFEAVKQT---QMIGLSPGMTQLKKEIEIVAASDLNVLISGETG 218 E+L+ +N +IG S M ++ +++ V + + VLI GETG Sbjct: 311 AEERLQKENSFLKGREERRRGGGGGAVDIIGNSDAMRKVIGQLDKVVDTRVTVLIEGETG 370 Query: 219 TGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMA 278 TGKEL+A A+H S R V NCAAL ES+ ESELFGH KG+FTGA + G FE+A Sbjct: 371 TGKELIAAAVHYRSRRRDKLFVAQNCAALAESLLESELFGHKKGSFTGATEEKKGLFEIA 430 Query: 279 DNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAG 338 D GTLFLDEI E L+LQ+KLLR LQ G+I+ VG V+VR++AATNR+L +EV G Sbjct: 431 DGGTLFLDEITETPLSLQSKLLRALQEGEIRPVGATSPKHVNVRIVAATNRNLEDEVAKG 490 Query: 339 RFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHY 398 RFR DL++RL VFP+ +PPLRER DD+ LLA +F E+ G S A L+ Y Sbjct: 491 RFREDLYYRLKVFPIRLPPLRERRDDISLLAAHFLERYADEIGKPCGGFSQQAMELMVAY 550 Query: 399 SFPGNVRELEHAIHRAVV-LARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLR 457 +PGNVREL++ + R V+ L E++ P + VA K +L+ Sbjct: 551 DWPGNVRELQNEVQRIVIQLEPGAFGTPELL-------SPRIRQVEGLVARAGTPKGSLK 603 Query: 458 EATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 E +A ++ + +AL +++N A+ L LH+ ++ G+ Sbjct: 604 EMMDAVEKFFLLEALRGHNNNKTNAAKSLGITREGLHKKLRQYGI 648 >UniRef50_UPI00016C44AF cetoacetate metabolism regulatory protein atoC n=5 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C44AF Length = 490 Score = 521 bits (1343), Expect = e-146, Method: Composition-based stats. Identities = 142/466 (30%), Positives = 212/466 (45%), Gaps = 11/466 (2%) Query: 43 LLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLI 102 +L D I ++ + + A D LPD GL Sbjct: 4 VLIIDDEPGILYSLKSALERGDTAVATAATAKQGLATVARERPDAVILDVRLPD-MSGLD 62 Query: 103 PGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVF-SDEELRLIAALAAGALSNAL 161 + + + + ++ + F+ +L + + A L Sbjct: 63 AFLLIRETDPRLPVIVITAHGSTET-AIEATKRGAFEYLLKPIDLHQLDEVLGRAFEMRL 121 Query: 162 LIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGK 221 + P ++ Q++G P M + K I +A D+ VLI GE+GTGK Sbjct: 122 AQ---VAPTASGDAPPPEDSADTEQIVGQCPAMLDVYKAIGRIAPQDVPVLILGESGTGK 178 Query: 222 ELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNG 281 ELVA+A++ SPR+ P V +NCAA+P+++ ESELFGH KGAFTGA R GKFE A G Sbjct: 179 ELVARALYLHSPRSDKPFVAINCAAIPDALLESELFGHEKGAFTGADRRRVGKFEQAQGG 238 Query: 282 TLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFR 341 T+FLDEIG++ A QAK+LR+LQ +RVG + ++ DVRV+AATNRDL V +FR Sbjct: 239 TVFLDEIGDMPPAAQAKMLRLLQDQRFERVGGNESVQTDVRVIAATNRDLSALVRDSKFR 298 Query: 342 ADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFP 401 DL +RL+ F +++PPLR+R D+ L +F + + + A A +L+ + +P Sbjct: 299 EDLLYRLNSFTVTLPPLRDRTGDIEPLVSHFVTAANRKLKKNVRGVDAAALAVLESHRWP 358 Query: 402 GNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPV-----VKQNL 456 GNVREL++A+ AVV A + + + A A + Sbjct: 359 GNVRELQNAMRYAVVQAVGEVITPDCLPASLRGAAAPPGDALELTALITSLLRVGATDIY 418 Query: 457 REATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 R+ T R + L H N A L L + LGL Sbjct: 419 RQVTHTVDRALLTAVLEHVHGNQKQAADRLGISRTTLRAKLQTLGL 464 >UniRef50_B3E6U1 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Desulfuromonadales RepID=B3E6U1_GEOLS Length = 467 Score = 521 bits (1343), Expect = e-146, Method: Composition-based stats. Identities = 145/462 (31%), Positives = 224/462 (48%), Gaps = 7/462 (1%) Query: 42 ALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGL 101 LL + + L R +E + A D ++P GL Sbjct: 7 ILLIDNEEGLCRMMEQVLLDSGYLVRAYTSPVKAMEEFSAAAW-DLVITDIKMP-GMTGL 64 Query: 102 IPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNAL 161 Q + + + + + +++ ++ +D+ + + NAL Sbjct: 65 EVLQRVKEKCRDLPVIIITAYATVE-MSIQALRKGAYDMLTK---PFEPDELVFRVKNAL 120 Query: 162 LIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGK 221 QL +N E ++ +IG S + + ++ VA D ++LI+GE+GTGK Sbjct: 121 QQAQLTEENRELRREIE-EKLQFDNIIGSSGALRNVLDKVAKVAGRDTSILITGESGTGK 179 Query: 222 ELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNG 281 EL+A+A+H S R + +NC LPES+ ESELFG+ KGAFTGA NR G E AD G Sbjct: 180 ELIAQAVHIHSNRKEGRFMAVNCGGLPESILESELFGYRKGAFTGAAENRQGLLEAADGG 239 Query: 282 TLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFR 341 TLFLDE+G L + +Q LLR LQ + +RVGD RVDVR+++ATN DL+E V G FR Sbjct: 240 TLFLDEVGNLPMNVQKTLLRFLQEKEFRRVGDTNSTRVDVRIISATNADLKEGVRTGTFR 299 Query: 342 ADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFP 401 DL++RL+V L +PPLR+R DD+ LLA +F + G + A +L + +P Sbjct: 300 EDLYYRLNVVNLHLPPLRDRIDDIPLLAAHFIHLQNQKFGTAVKAFERDAMQILCTFEWP 359 Query: 402 GNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATE 461 GN+R+L + I + + + + + + + T + V EA E Sbjct: 360 GNIRQLRNVIEACMAMEASDYISLDTLGQVIDLPEGRIVPATVQAGPVLSDDLPFTEALE 419 Query: 462 AFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 F+R+ +R L ++ + AR +VA L+R KR GLK Sbjct: 420 RFERDLLRDLLKKHGGAVDSAAREAGMNVATLYRKIKRYGLK 461 >UniRef50_D2QY56 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2QY56_9PLAN Length = 483 Score = 521 bits (1343), Expect = e-146, Method: Composition-based stats. Identities = 161/461 (34%), Positives = 240/461 (52%), Gaps = 24/461 (5%) Query: 43 LLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLI 102 L+ D ++F + L++ + A LE +A D D ++P GL Sbjct: 10 LVVDDDQEFRETVVKRLSRSGFRLQDAPTAEAALE-LAERRDFDVAVFDMQMP-GMSGLD 67 Query: 103 PGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALL 162 H + L GQ I + ++ M+ FD + + A Sbjct: 68 LLAAFKTKHPDCEVILLTGQGSIES-AVEAMRMGAFDYLTK---PFPLRDLEVRIEKAYD 123 Query: 163 IEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKE 222 L +N A + MIG S M +L++ I+ S+ +LI GE+GTGKE Sbjct: 124 RHLLRKENQQLKTILARSAPG-STMIGKSVAMQELQRLIQRAGPSEKAILIQGESGTGKE 182 Query: 223 LVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGT 282 LVA+A+H AS RA P+V +NCAALPE + ESELFGH KGAFTGA++ + G FE+AD T Sbjct: 183 LVARALHAASSRADRPMVVINCAALPEPLLESELFGHEKGAFTGAVAAKPGLFEVADGST 242 Query: 283 LFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRA 342 LF+DEIGE+ +LQAKLLRVL+ G ++R+G + RV+VR+LAATNR +++EV AG FR Sbjct: 243 LFIDEIGEMPGSLQAKLLRVLEDGSLRRIGSLQERRVNVRILAATNRSMQDEVTAGNFRE 302 Query: 343 DLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPG 402 DL++R++V L +PPLR R D+ LL +F + + A + L+ Y++PG Sbjct: 303 DLYYRINVMSLELPPLRSRTADIPLLVEHFLGK--------DWRIEPTALSALEQYAWPG 354 Query: 403 NVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEA 462 NVR+L +AI RA ++A + A P++ LP + + A Sbjct: 355 NVRQLINAIERAKIMADGRTIRANDLPTEVLHALPQIELP---------PSLDDIDDLSA 405 Query: 463 FQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 QR+ I + L + N + ARML D L+RL ++ ++ Sbjct: 406 IQRQKIVEVLKREKGNKSRAARMLGIDRRKLYRLLEKFTIE 446 >UniRef50_D0LTW0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LTW0_HALO1 Length = 472 Score = 520 bits (1341), Expect = e-146, Method: Composition-based stats. Identities = 152/473 (32%), Positives = 218/473 (46%), Gaps = 17/473 (3%) Query: 29 ITTLRQVLECDASALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRF 88 + + + + + L+ D + + L + A +E + RAG V Sbjct: 8 LASAPERVREQFTVLVVEDDDAMRDVLQEELGDAGFRVQVAAGARAGIEQV-RAGPVDMV 66 Query: 89 PADSELPDPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRL 148 D +PD DG ++ + + + I + ++ D + Sbjct: 67 ITDLRMPD-LDGFDLIRDINATDSPPPIIMVTAFGSIDT-AIKAVKLGAHDYITK---PF 121 Query: 149 IAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASD 208 + AL L + +I S M +L + VA S Sbjct: 122 EIDELVLVIDKALAERALRRRVDRLQREVE-SRYGFDNIIAHSSEMRELLSLVSRVATST 180 Query: 209 LNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAI 268 +VL++GE+GTGKELVA+AIH SPRA V +N AA+PE++ ESELFGH KGAFT A Sbjct: 181 ASVLLTGESGTGKELVARAIHYNSPRAEGAFVAVNLAAVPEALVESELFGHTKGAFTDAR 240 Query: 269 SNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATN 328 +++G F AD GT+FLDEI E++ LQAKLLR LQ +I+ VG R RVDVRV+AATN Sbjct: 241 QSKAGLFNEADGGTIFLDEIAEMAAPLQAKLLRALQEQEIRPVGATRPQRVDVRVVAATN 300 Query: 329 RDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSR-VVL 387 RDL+E + G FR DL++RL+V + +PPLR R DD++ LA +F R R V L Sbjct: 301 RDLQERMAEGDFREDLYYRLNVIQIELPPLRRRPDDILPLAEHFLALASARLTPPRSVRL 360 Query: 388 SAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVA 447 +A + +L Y +PGNVREL + I R + L R E + L Sbjct: 361 AAETQRILHSYPWPGNVRELANVIERGLTLCRGDLIAPEDLPNHVRERKSNDFLSAAVAR 420 Query: 448 AVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRL 500 R +RE I + L + N A+ L D L+R Sbjct: 421 ---------RMNLAQLEREFIERILKEEGGNKTRTAQRLGLDRKTLYRKLDEY 464 >UniRef50_A7HFP7 Transcriptional regulator, NifA subfamily, Fis Family n=2 Tax=Myxococcaceae RepID=A7HFP7_ANADF Length = 674 Score = 520 bits (1341), Expect = e-146, Method: Composition-based stats. Identities = 174/521 (33%), Positives = 253/521 (48%), Gaps = 33/521 (6%) Query: 4 SVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYD--SRQFIPLAIDGLA- 60 + +L ++ L + ++ FQ L ++LR+V +C L D + + +D Sbjct: 161 RLRLLLDVNELLVAHLDLREMFQALASSLRRVTDCHFIGLALPDAATGELRQHIVDHPDG 220 Query: 61 KDVLGRRFALEGHP-RLEAIARAGDVVRFPA---DSELPDPY---DGLIPGQESLK--VH 111 K + L H R G V + + PD Y +G + L+ V Sbjct: 221 KGAITEGMVLPLHGSASGKAFRTGAPVLLNDPEANRQDPDLYGTPEGARFYRTVLEEGVP 280 Query: 112 ACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALL-------IE 164 + LPL ++G L L +F E + +A + A++NAL E Sbjct: 281 SGYVLPLVHRGEVLGVLQLKKYADARFKEREIEFMSKVAGQLSIAVANALEYREVKESKE 340 Query: 165 QLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELV 224 +L+ + + + A ++IG+S + Q+ +I+ VA +D VLI GETGTGKEL+ Sbjct: 341 RLDRERVYLKEEIR-SAHDFEEIIGVSRTLKQVLGQIDTVAVTDSTVLILGETGTGKELI 399 Query: 225 AKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLF 284 A+AIH S R P V +NC+A+P + ESELFGH +GAFTGA + R G+FE AD GTLF Sbjct: 400 ARAIHNRSRRRDRPFVKVNCSAIPTGLLESELFGHERGAFTGATAPRIGRFEAADQGTLF 459 Query: 285 LDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADL 344 LDEIG+L + LQ KLLRVLQ + +R+G R RVDVRV+AATNR L V GRFR DL Sbjct: 460 LDEIGDLPVDLQPKLLRVLQEREFERLGASRTRRVDVRVVAATNRGLATMVGEGRFREDL 519 Query: 345 FHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNV 404 ++RL+VFP+++PPLRER D+ LL +F R G + + L Y +PGNV Sbjct: 520 YYRLNVFPITLPPLRERAGDIPLLVRHFVGVYARRMGKQIDHIPDASMRALVGYHWPGNV 579 Query: 405 RELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQ 464 REL++ I RAV+L + N + + Sbjct: 580 RELQNVIERAVILTPGAVLELAL----------AERAAGAREDRPDAAAPNGHRTLQEVE 629 Query: 465 RETIRQALAQNHHNWA---ACARMLETDVANLHRLAKRLGL 502 RE I AL + A L +L ++LG+ Sbjct: 630 REHILGALQEAKWVIGGPNGAAARLGLRRTSLMYRMEKLGI 670 >UniRef50_D2U436 Two-component system, NtrC family, nitrogen regulation response regulator n=2 Tax=Proteobacteria RepID=D2U436_9ENTR Length = 475 Score = 520 bits (1341), Expect = e-146, Method: Composition-based stats. Identities = 137/482 (28%), Positives = 219/482 (45%), Gaps = 25/482 (5%) Query: 38 CDASALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDP 97 + D I ++ + + E + +D +PD Sbjct: 1 MQKGKVWIVDDDSAIRWVLERALNNAHMECTSFEDIQSVLIALEKTCPDVLISDIHMPD- 59 Query: 98 YDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGAL 157 DGL + H + + + + + ++ Q FD + Sbjct: 60 NDGLTLLTRLKQSHPKLPIIIMTAHSDLNT-AVNAYQQGAFDYLPK---PFDIDETILLV 115 Query: 158 SNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGET 217 AL + + N + +++IG +P M ++ + I ++ S ++VLI+GE+ Sbjct: 116 KRALNYYRNQQPNTR---SNSPPTAAVSKIIGEAPAMQEVYRIIGRLSRSSISVLINGES 172 Query: 218 GTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEM 277 GTGKEL+A A+H SP+A P + LN AA+P+ + ESELFGH KGAFTGA R G+FE Sbjct: 173 GTGKELIADALHRHSPKATGPFIALNMAAIPKDLIESELFGHEKGAFTGASQVRQGRFEQ 232 Query: 278 ADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLA 337 A G+LFLDEIG++ L +Q +LLRVL G RVG ++VDVR++AAT++ L + V Sbjct: 233 AHGGSLFLDEIGDMPLDIQTRLLRVLAEGQFYRVGGYTPIKVDVRIIAATHQCLEQLVQE 292 Query: 338 GRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQH 397 G+FR DLFHRL+V + +PPLRER +D+ LA YF Q + G+ +L+ +L Sbjct: 293 GKFREDLFHRLNVIRIPLPPLRERTEDIPHLARYFLHQTAQQLGVESKILAPQTETILMS 352 Query: 398 YSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQN-- 455 + GNVR+LE+ V++ + + + + P +A + Sbjct: 353 LPWSGNVRQLENVCSWLTVMSSSQMILPQDLPSDLQQNQQFLYSPKKTLATNNEKWLDPL 412 Query: 456 ---------------LREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRL 500 L++ +R + AL + AR+L L R K Sbjct: 413 ANWTKTALENNKQNLLQQVLPQIERTMLECALTYTKGHKQEAARLLGWGRNTLTRKLKEF 472 Query: 501 GL 502 G+ Sbjct: 473 GM 474 >UniRef50_C7PUT4 Two component, sigma54 specific, transcriptional regulator, Fis family n=36 Tax=Bacteroidetes RepID=C7PUT4_CHIPD Length = 449 Score = 520 bits (1341), Expect = e-146, Method: Composition-based stats. Identities = 142/466 (30%), Positives = 230/466 (49%), Gaps = 22/466 (4%) Query: 38 CDASALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDP 97 + L+ D + L +A + + I ++ D +LPD Sbjct: 1 MPGTVLIIDDEEKLRSLTKRIIALEGFNV-LEAGNIKSAQKIIEKEEIDVVLCDVKLPDG 59 Query: 98 YDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSD-EELRLIAALAAGA 156 G+ + + + + + L I + ++ FD + ++ I L A Sbjct: 60 -SGVDYARTIKEKNPSIEIILLTAYGNI-PDGVQAIKNGAFDYLTKGDDNNRIIPLLNRA 117 Query: 157 LSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGE 216 L L +++E ++ + ++G S + ++ VA +D VL+ GE Sbjct: 118 LEKVQLQKRIEKL-----ESQVGKKYSFDTILGTSRPIRDAIEQASKVAPADTTVLLLGE 172 Query: 217 TGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFE 276 TGTGKE+ A+AIH S R P V LNC+A + ESELFG+ GAFT A ++ G E Sbjct: 173 TGTGKEVFAQAIHNNSKRNGKPFVALNCSAFSRELLESELFGYKAGAFTNANRDKKGLIE 232 Query: 277 MADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVL 336 A+ GT+FLDEIGE+ L LQ+KLLRVL+ G+ +VGD + +V+VR++AATNRDL+EE Sbjct: 233 EANTGTIFLDEIGEMPLDLQSKLLRVLETGEFIKVGDTKPTKVNVRIIAATNRDLKEESQ 292 Query: 337 AGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQ 396 G FR DL++RL+VF +++PPLRER D+ LA YF + + ++ LQ Sbjct: 293 KGHFREDLYYRLNVFAITLPPLRERKKDIPQLAEYFVGIFSAKINQRKQKVTPAFIEKLQ 352 Query: 397 HYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNL 456 + + GN+REL++ + RAV++A E + + L + A+ P+ +L Sbjct: 353 LHEWKGNIRELKNVLERAVIMAGGDDLAVEHLP---------LDLQIADKASTPLSAFDL 403 Query: 457 REATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGL 502 + ++ I + L +N AR+L +A L+R + GL Sbjct: 404 ----ASVEKLHIIRVLYHTKNNKTEAARLLNIGLATLYRKIEEYGL 445 >UniRef50_C7PN78 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PN78_CHIPD Length = 541 Score = 520 bits (1341), Expect = e-146, Method: Composition-based stats. Identities = 162/528 (30%), Positives = 240/528 (45%), Gaps = 50/528 (9%) Query: 8 LANIAIELQRGIGHQDRFQRLITT-LRQVLECDASALLRYDSRQF---------IPLAID 57 L ++ + +D + LIT L ++ + + Sbjct: 18 LLELSNRIAAARHREDLWDNLITAQLLELFNSKYYTICMINEDGVTHSPFLHSEESTIKS 77 Query: 58 GLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSEL-----PDPYDGLIPGQESLKVHA 112 + + + A V F + P ++ V Sbjct: 78 RTGETPIISDLHPIEDGVFNLVLEADGPVSFELQKLMRGRLVPPYIYRW----FNVGVVE 133 Query: 113 CVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALL---------- 162 + + + GQ G L L Q D F I + +SN L Sbjct: 134 MMAVKICNGQQPKGLLYLFTDQRDAFSEVDARLTNAITNILGIGISNILANETIEKQLQE 193 Query: 163 ----IEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETG 218 ++L+++N + + ++G S M + + VA S+ VL+ GETG Sbjct: 194 IERFRQKLQNENHYLQEQQGLQN-TFADIVGTSAEMQRRITILSRVAPSESTVLLLGETG 252 Query: 219 TGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMA 278 TGKE+ A+AIH SPR N ++ +NCAALP + ESELFGH KG+FTGA R GKFE+A Sbjct: 253 TGKEVFARAIHAGSPRRDNLMIKVNCAALPPHLIESELFGHEKGSFTGATQRRIGKFELA 312 Query: 279 DNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAG 338 D+ TLFLDEIGEL L Q+KLLRVLQ +I+R+G ++V+VR++AATNR+L EEV AG Sbjct: 313 DHSTLFLDEIGELPLEFQSKLLRVLQEKEIERIGGKGSIKVNVRIVAATNRNLEEEVRAG 372 Query: 339 RFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHY 398 RFR+DL++RL VFP+++PPLRER +D+ LA +F ++ +SA A L HY Sbjct: 373 RFRSDLYYRLHVFPIAIPPLRERKEDIPALANHFLQRFAANSRREAPSISAKAMEGLMHY 432 Query: 399 SFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLRE 458 +PGNVRELEH + R ++L + P V A Sbjct: 433 EWPGNVRELEHLMERTLLLTTTPVIAKIDL-------------PGVPVTASKDPDSTFIL 479 Query: 459 ATEAFQRETIRQALAQNHHNWA---ACARMLETDVANLHRLAKRLGLK 503 + ++E I + L + A A L+ L+ K+LG+K Sbjct: 480 PLDLMEKEYILKVLKLCNGRIAGPNGAAAKLKLPSTTLNSRMKKLGIK 527 >UniRef50_Q3ABV5 Sigma-54 dependent transcriptional regulator n=3 Tax=Bacteria RepID=Q3ABV5_CARHZ Length = 732 Score = 519 bits (1339), Expect = e-146, Method: Composition-based stats. Identities = 151/491 (30%), Positives = 246/491 (50%), Gaps = 34/491 (6%) Query: 26 QRLITTLRQVLECDASALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDV 85 +++I TL + S +L YD + ++ +E L +++ Sbjct: 262 EQIIETLESLTNNRTSGVLFYD---LLFCRGCIDGPEIDSELTYIERRQYLLELSKGNKT 318 Query: 86 VRFPADSELPDPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTL-------DGMQPDQF 138 + S+ P + ++ K+ PL + + L D + Sbjct: 319 IL----SKKPAGTFRVRYTVKARKL------PLPTEEEIREILAYTDKFTPEDELNCGAC 368 Query: 139 DVFSDEE--LRLIAALAAGALSNALLIEQLESQNMLPGDATPFE---AVKQTQMIGLSPG 193 S E + + LA + L+++ + + E + G + Sbjct: 369 GYNSCREKAIAVYQGLAEIDMCLPFLLKKTRGEAEFYRNKYEMENRKKYYLDGITGQTEK 428 Query: 194 MTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAE 253 + ++KK IE A SD NVLI GE+G GKE+ A+ IH S RA P V +NCAA+PE++ E Sbjct: 429 IIEVKKLIEKAAMSDGNVLIQGESGVGKEIAARTIHYLSERADKPFVAINCAAIPENLLE 488 Query: 254 SELFGHVKGAFTGAISN-RSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVG 312 SELFG+ +GAFTGA ++GK E AD GTLFLDEIG++ L++Q KLLR +Q + +R+G Sbjct: 489 SELFGYEEGAFTGAKRGGKAGKIEQADGGTLFLDEIGDMPLSMQVKLLRFIQNREFERIG 548 Query: 313 DDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYF 372 + +VD+R++AATN+ L + V GRFR DL++RL+VF +++PPLRER DD+ LL F Sbjct: 549 SNTPRKVDIRIIAATNQPLAKLVKEGRFRMDLYYRLNVFNINIPPLRERRDDIPLLVNRF 608 Query: 373 CEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQ 432 + R+ ++ ++++ A N+L +YS+PGN+REL++ I RA LA E + Sbjct: 609 MNEFCERRKMAPKIVTSEAMNILMNYSWPGNIRELQNVIERAYYLAEGNLIKPEHL---- 664 Query: 433 HFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVAN 492 P +EA +++ I + L ++N ACA++L A Sbjct: 665 ----PAQLTSKALSGERITKITTFKEAVAEVEKKLIIEGLKATNYNKLACAKLLGIPRAT 720 Query: 493 LHRLAKRLGLK 503 L++ K G++ Sbjct: 721 LYQKIKEYGIE 731 >UniRef50_UPI00016C585F ornithine decarboxylase inhibitor-putative sigma54 transciptional regulator n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C585F Length = 643 Score = 519 bits (1338), Expect = e-146, Method: Composition-based stats. Identities = 163/505 (32%), Positives = 235/505 (46%), Gaps = 23/505 (4%) Query: 2 SFSVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLAK 61 +V VL +A+++ + + + A+L + + L + Sbjct: 156 PQAVGVLYRLALDMAAAADKPALCVLAADAVFRATPAEVVAVLALKEGRELELVTHRVRN 215 Query: 62 DVLGRRFALEGHPRLEAIARAGDVVR---FPADSELPDPYDGLIPGQESLKVHACVGLPL 118 + + + D L D LKV + + P+ Sbjct: 216 GGPATYHKVSQF-VSSEVLSDRQAILAENVATDRMLKD-----RDSIAELKVASLICAPI 269 Query: 119 FAGQNLIGALTLDGMQPDQ-FDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDAT 177 A ++G L L + E +A L ++N Sbjct: 270 MADDKVLGLLHLYRTIGHAPLNADDLEFTLAVARHLGTVWHRFSRQASLSAENRSLRSQL 329 Query: 178 PFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVN 237 E+ +++G S + Q++ ++ VA + VL+ GE+G+GKELVA+AIH SPR Sbjct: 330 KIES----EIVGESAVLQQIESQVVRVAETRATVLVRGESGSGKELVARAIHLHSPRREG 385 Query: 238 PLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQA 297 + LNCAAL E++ ESELFGH KGAFTGA GKFE ADNGT+FLDEIGE++L+ QA Sbjct: 386 AFICLNCAALTETLLESELFGHEKGAFTGATERMVGKFEAADNGTIFLDEIGEMALSTQA 445 Query: 298 KLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPP 357 K LRVL+ +RVG + ++VDVRV+AATNR L E V AG FR DLF+RL V L VPP Sbjct: 446 KFLRVLEGHPFERVGGNTAIKVDVRVVAATNRPLEEAVRAGTFRRDLFYRLQVVQLDVPP 505 Query: 358 LRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVL 417 LR+R DDV LLA +F ++ + A + L+ Y +PGNVREL + I RAV L Sbjct: 506 LRDRLDDVPLLAEHFLKRFARETARKFKGFTPEALDKLRAYRWPGNVRELRNVIERAVAL 565 Query: 418 ARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHH 477 + I + + P V+A V K E E ++ I + L Sbjct: 566 GNGPQLDAADIW------LSGLDVGAPVVSAALVYK---PETIEEVEKRHILETLKHTDW 616 Query: 478 NWAACARMLETDVANLHRLAKRLGL 502 N + A +L + + L R R GL Sbjct: 617 NKSRAATILGIERSTLDRKIDRYGL 641 >UniRef50_A6G018 Two component, sigma54 specific, transcriptional regulator, Fis family protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G018_9DELT Length = 628 Score = 519 bits (1338), Expect = e-146, Method: Composition-based stats. Identities = 157/501 (31%), Positives = 225/501 (44%), Gaps = 19/501 (3%) Query: 2 SFSVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLAK 61 S + LA + L R Q ++ + L + LL D + A G Sbjct: 139 SSRLAALAALGDRLARCGSLQAVYRTASQWAVEALPASRALLLSPDGSDILGAATSGPVV 198 Query: 62 DVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLP---L 118 D+ L + V PD D + + + P L Sbjct: 199 DL------AISRTLLRRVLSENRAVMVRDVLSEPDLADRRSV--QIRGIQGAMAAPAKNL 250 Query: 119 FAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATP 178 + D+ + AA L + + ++ A Sbjct: 251 VFYAEWSTKEAVASAVHGAAPRTWDDNALTLLVCAAQLLD---AMGESATERSQLRAALS 307 Query: 179 FEAV-KQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVN 237 + +++G SP M +L +E VAA++ VL++GE+GTGKEL A+ IH SPRA Sbjct: 308 QRGSIEPGRVVGSSPQMKKLHVFLERVAATNATVLVNGESGTGKELAARMIHARSPRAER 367 Query: 238 PLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQA 297 P V +NCAA+PE++ ESE FGH KGAFTGA++ G FE A GTLFLDEI E++ A QA Sbjct: 368 PFVAINCAAVPENLLESEFFGHEKGAFTGAVARHQGVFERAHTGTLFLDEIAEMAPATQA 427 Query: 298 KLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPP 357 ++LRVL+ RVG ++VDVR++AAT+RDLR+ V G+FR DL +RLSV +PP Sbjct: 428 RMLRVLENRSFTRVGGTEEVKVDVRLVAATHRDLRKLVADGQFREDLLYRLSVIHTKLPP 487 Query: 358 LRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVL 417 LRER D+ L +FC G ++ A +L +Y +PGNVREL + + RA+VL Sbjct: 488 LRERRGDIPELVRHFCSVLGDDMGRHVETVADDALAVLVNYRWPGNVRELRNVVERALVL 547 Query: 418 ARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHH 477 + + A P P P L +++ I AL Sbjct: 548 GDGPVLELDDLPPELQHAGPHPDQPGASPVVSPQKVLPL----AELEQQAIAAALEATGG 603 Query: 478 NWAACARMLETDVANLHRLAK 498 N A A +L D L+R K Sbjct: 604 NKARAAALLGIDRTTLYRKLK 624 >UniRef50_A8UUR2 Transcriptional regulator (NtrC family) protein n=2 Tax=Aquificaceae RepID=A8UUR2_9AQUI Length = 441 Score = 519 bits (1338), Expect = e-146, Method: Composition-based stats. Identities = 137/462 (29%), Positives = 227/462 (49%), Gaps = 23/462 (4%) Query: 42 ALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGL 101 L+ D + F L + L A + E + D D LPD +G+ Sbjct: 3 VLVVEDEKDFRELLTEHLRGLGYQTEGACDLEEAYE-VLEERDFSVVLLDLFLPDG-NGM 60 Query: 102 IPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNAL 161 + + A + + G I ++ ++ +D + + A+ Sbjct: 61 ELLKWIRENSALTEVVVITGHGTIKT-AVEAIKLGAYDFLTK---PCSLKEVEITIKKAV 116 Query: 162 LIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGK 221 ++ +N+L ++ + S M ++ ++++ +A SD VLI+GE+G GK Sbjct: 117 ESRGIKRENLLYKKEKRL-SLDYGGFVFESRAMKEVIEKVDRIACSDCPVLITGESGVGK 175 Query: 222 ELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNG 281 E++A IH S RA P+V LN A++P+ + E+ELFG+ KGAFTGA S + G FE+AD Sbjct: 176 EVIASIIHRNSDRADKPMVALNIASIPKELIEAELFGYEKGAFTGADSGKEGFFELADGS 235 Query: 282 TLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFR 341 TLFLDEIGE+ ++LQAKLLR ++ R+G R + +VR++ ATNR L E V G FR Sbjct: 236 TLFLDEIGEMDMSLQAKLLRAIETSKFYRIGGRREIESNVRIITATNRHLGELVRRGEFR 295 Query: 342 ADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFP 401 DL++RL+V +++PPLRER +D++ LA +F + + + +A A N L Y + Sbjct: 296 EDLYYRLNVVEINIPPLRERREDILPLAYHFLDLFNRKYSKNIKGFTARAENSLTSYPWY 355 Query: 402 GNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATE 461 GNVREL++ + RAV+ + R E I + + + + Sbjct: 356 GNVRELKNIVERAVLFSDGDRIDSEDISCLFTHQESKKSF----------------KTIK 399 Query: 462 AFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503 +RE I + L Q + N + +L + L+R + G++ Sbjct: 400 DVEREYITEILKQVNFNKRKASEILGIPLRTLYRKLESYGIE 441 >UniRef50_A6GJF4 Sigma-54 dependent, Vanadium nitrogenase transcriptional regulator, VnfA n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GJF4_9DELT Length = 507 Score = 518 bits (1336), Expect = e-145, Method: Composition-based stats. Identities = 169/507 (33%), Positives = 240/507 (47%), Gaps = 15/507 (2%) Query: 6 DVLANIAIELQRGIGHQDRFQRLITTLRQVLECDA--SALLRYDSRQFIPLAIDGLAKDV 63 +L + L G+ + ++ L + L+ +S + + + Sbjct: 6 SLLRSPTQALNEGMELRSVVNSILRMLAERPAMVHPYLTLVEPESGESHLEEAPDMTPEQ 65 Query: 64 LGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLF-AGQ 122 R G + + ++G S+ + L G+ + + + PL Sbjct: 66 QRRIRPRHGEGIVGRVVQSGRTRVVHGSSD--SFLNRL--GRSEPEGMSFICAPLRQRDG 121 Query: 123 NLIGALTLDGMQPD-QFDVFSDEELRLIAALAAGALSNAL----LIEQLESQNMLPGDAT 177 ++G L +D D + +A + A+ E +E +N Sbjct: 122 EIVGTLAVDHRGQDPAALQGDVLLIEALAEMLGRAIELRRRSMAEREAVELENQRLRAEL 181 Query: 178 PFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVN 237 + +IG M Q+ I V+++D VL+ GE+GTGKELVA+AIH ASPRA Sbjct: 182 RG-RFRVANIIGNHKSMAQVYDRIARVSSADTTVLLRGESGTGKELVARAIHFASPRAEA 240 Query: 238 PLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQA 297 P V +NCAALPE ESELFGH +GAFTGAI R G+FE+AD GTLFLDEIGEL Q Sbjct: 241 PFVAVNCAALPEGTLESELFGHERGAFTGAIGARKGRFELADGGTLFLDEIGELRPHTQV 300 Query: 298 KLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPP 357 KLLRVLQ +RVG R DVRVL AT+ DL + G FR DL++RL+VF + +PP Sbjct: 301 KLLRVLQERRFERVGGATTRRCDVRVLTATHADLEAAMARGEFREDLYYRLNVFEIMLPP 360 Query: 358 LRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVL 417 LRERG+D++ LA +F E+ RQ + A L + +PGNVRELE+ I RAV+L Sbjct: 361 LRERGEDILALADFFVERYGPRQRPPVTRIGHDAARHLLAWDWPGNVRELENCIERAVLL 420 Query: 418 ARATRSGDEVILEAQHFAFPEVTLPTPEVAAVP--VVKQNLREATEAFQRETIRQALAQN 475 E + A A + L EA EA +RE + +ALA + Sbjct: 421 TNDGVIEAEHLPPTLRGAAGPSRARASNTPASRAVAEGRTLDEALEAVEREILERALADS 480 Query: 476 HHNWAACARMLETDVANLHRLAKRLGL 502 N A+ AR L + K+ L Sbjct: 481 GGNRASAARALGISERRMGLRVKKYRL 507 >UniRef50_C0QE85 FhlA n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QE85_DESAH Length = 492 Score = 518 bits (1336), Expect = e-145, Method: Composition-based stats. Identities = 165/497 (33%), Positives = 267/497 (53%), Gaps = 20/497 (4%) Query: 17 RGIGHQDRFQRLITTLRQVLECDASALLRYDSR---QFIPLAIDGLAKDVLGRRFALEGH 73 + + ++T +R+++E + + +L + R + + A K + G F+LE Sbjct: 6 STLTCEKTMDIVLTAIRELIEYELAVVLSCEGRSRLRVLKAAGPAATKILEGYTFSLEDR 65 Query: 74 PRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGM 133 + AI + G F D Y G++ H+C+ PL+ L G LTLD Sbjct: 66 KDIAAIVQEGKPYLFDEAEPHVDTYAGVVDFPAD---HSCMVTPLYLDDTLQGVLTLDHH 122 Query: 134 QPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDA----TPFEAVKQTQMIG 189 ++F + + ++ L + A++ + E LE +++ A +++IG Sbjct: 123 SCNRFTPQNVRLVGTLSKLISLAIAQSNDKEALEKEHLAILQERNFLLERNAGALSELIG 182 Query: 190 LSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPE 249 S ++K +VAAS VLI GETGTGKE+VA+A+H S R P + +NC+A+ Sbjct: 183 NSVSWNRVKDAAAMVAASQTPVLIQGETGTGKEVVARAVHRLSDRKGGPFIPVNCSAISA 242 Query: 250 SVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQ 309 VAESELFGH KG FTGA+S+R G+FE+AD GTLFLDEIG+L L +Q KLLR LQ ++ Sbjct: 243 GVAESELFGHEKGGFTGAVSSRKGRFELADGGTLFLDEIGDLPLEIQPKLLRALQEKKLE 302 Query: 310 RVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLA 369 R+G + + VDVR++AA++ DL V RFR DL++RL+VFP+ +PPLRERG D+++LA Sbjct: 303 RIGGESTISVDVRIIAASHVDLYTAVRENRFREDLYYRLNVFPIRLPPLRERGSDILILA 362 Query: 370 GYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVIL 429 YF Q R R G + L+ + ++L +PGNVR+L++ + RA +L+R E + Sbjct: 363 EYFTGQIRARAGHKDLALAPESVDILLQADWPGNVRQLQNTLERAAILSRGGVIRAEH-I 421 Query: 430 EAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHN---WAACARML 486 A LP ++ A +++ ++ + +++ L + A +L Sbjct: 422 VADETPEDSFCLPGADLDATALLRFDV------MVKAYLQKVLTRTGGKVYGKGGAAEIL 475 Query: 487 ETDVANLHRLAKRLGLK 503 + LH K+ G++ Sbjct: 476 DLKPTTLHSKLKKYGIR 492 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.312 0.176 0.631 Lambda K H 0.267 0.0539 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,822,005,244 Number of Sequences: 3077464 Number of extensions: 252338679 Number of successful extensions: 639358 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 7742 Number of HSP's successfully gapped in prelim test: 7745 Number of HSP's that attempted gapping in prelim test: 611888 Number of HSP's gapped (non-prelim): 20583 length of query: 504 length of database: 1,040,396,356 effective HSP length: 133 effective length of query: 371 effective length of database: 631,093,644 effective search space: 234135741924 effective search space used: 234135741924 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.0 bits) S2: 96 (41.2 bits)