18/01/2012 19:48:15 : INFO  : Run start: Wed Jan 18 19:48:14 GMT 2012
18/01/2012 19:48:20 : INFO  : Initialised job
18/01/2012 19:48:21 : INFO  : Renaming log file 'phyre2_20120118_194814.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/038a20397b4cc51f/phyre_20120118_194814.log'
18/01/2012 19:48:23 : INFO  : Initialised job:
Sequence
>batch____
MKKRKTVKKRYVIALVIVIAGLITLWRILNAPVPTYQTLIVRPGDLQQSVLATGKLDALR
KVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEA
ELKLARVTYSRQQRLAQTKAVSQQDLDTAATEMAVKQAQIGTIDAQIKRNQASLDTAKTN
LDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMSAMLVKAQVSEADVIHLKPG
QKAWFTVLGDPLTRYEGQIKDVLPTPEKVNDAIFYYARFEVPNPNGLLRLDMTAQVHIQL
TDVKNVLTIPLSALGDPVGDNRYKVKLLRNGETREREVTIGARNDTDVEIVKGLEAGDEV
VIGEAKPGAAQ

18/01/2012 19:48:24 : INFO  : Checked sequence
18/01/2012 19:48:26 : INFO  : Finding homologues with PSI-BLAST
18/01/2012 19:48:27 : INFO  : PSI-BLAST 3 iterations
18/01/2012 19:51:45 : INFO  : PSI-BLAST 5 iterations
18/01/2012 19:56:53 : INFO  : Finished PSI-BLAST
18/01/2012 19:56:55 : INFO  : Running Buildali to generate a3m file
18/01/2012 21:17:55 : INFO  : Converting to HMM
18/01/2012 21:18:15 : INFO  : Calibrating HMM
18/01/2012 21:18:34 : INFO  : Searching HMM database
18/01/2012 21:27:05 : INFO  : Finished buildali
18/01/2012 21:27:07 : INFO  : Predicting secondary structure
18/01/2012 21:27:15 : INFO  : Predicted secondary structure (PSI-Pred)
18/01/2012 21:27:17 : INFO  : Predicting Disordered regions
18/01/2012 21:27:21 : INFO  : Predicted Disorder (Disopred)
18/01/2012 21:27:23 : INFO  : Running memsat_svm check
18/01/2012 21:30:34 : INFO  : Running memsat_svm full
18/01/2012 21:35:41 : INFO  : Predicted Transmembrane (memsat_svm) ID '038a20397b4cc51f'
18/01/2012 21:35:43 : INFO  : Initialising fold library search
18/01/2012 21:35:47 : INFO  : Initialised search input
18/01/2012 21:35:49 : INFO  : Building Ensemble models
18/01/2012 21:35:53 : INFO  : Building hh.c3h9iB_.model.1.pdb
18/01/2012 21:36:10 : INFO  : Building hh.c3fppB_.model.2.pdb
18/01/2012 21:36:24 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/038a20397b4cc51f/hh.c3fppB_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/038a20397b4cc51f/c3fppB_.2.pdb
18/01/2012 21:36:29 : INFO  : Building c3h9iB_.1.pdb
18/01/2012 21:36:47 : INFO  : Building c3fppB_.2.pdb
18/01/2012 21:37:02 : INFO  : Building c2f1mA_.3.pdb
18/01/2012 21:37:17 : INFO  : Building c3lnnB_.4.pdb
18/01/2012 21:37:33 : INFO  : Building d1vf7a_.5.pdb
18/01/2012 21:37:49 : INFO  : Building c1t5eB_.6.pdb
18/01/2012 21:38:05 : INFO  : Building c2k33A_.7.pdb
18/01/2012 21:38:23 : INFO  : Building c2b8gA_.8.pdb
18/01/2012 21:38:40 : INFO  : Building d1dcza_.9.pdb
18/01/2012 21:38:57 : INFO  : Building c2ejgD_.10.pdb
18/01/2012 21:39:14 : INFO  : Building d1o78a_.11.pdb
18/01/2012 21:39:30 : INFO  : Building c2dn8A_.12.pdb
18/01/2012 21:39:47 : INFO  : Building c2ejmA_.13.pdb
18/01/2012 21:40:03 : INFO  : Building d1bdoa_.14.pdb
18/01/2012 21:40:18 : INFO  : Building c2kccA_.15.pdb
18/01/2012 21:40:35 : INFO  : Building c3n6rK_.16.pdb
18/01/2012 21:40:53 : INFO  : Building c2l5tA_.17.pdb
18/01/2012 21:41:10 : INFO  : Building d1iyua_.18.pdb
18/01/2012 21:41:26 : INFO  : Building d1ghja_.19.pdb
18/01/2012 21:41:41 : INFO  : Building d1k8ma_.20.pdb
18/01/2012 21:42:39 : INFO  : Finished HH model building
18/01/2012 21:42:41 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
18/01/2012 21:43:45 : INFO  : html domain output complete ID '038a20397b4cc51f'
18/01/2012 22:16:17 : INFO  : Run end  : Wed Jan 18 22:16:16 GMT 2012
