BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= batch____
         (89 letters)

Database: uniref50.fasta 
           3,077,464 sequences; 1,040,396,356 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P75786 Putative uncharacterized protein yliL n=7 Tax=Es...   185   3e-46
UniRef50_A9MSS7 Putative uncharacterized protein n=3 Tax=Salmone...    44   0.002

>UniRef50_P75786 Putative uncharacterized protein yliL n=7 Tax=Escherichia coli
          RepID=YLIL_ECOLI
          Length = 89

 Score =  185 bits (470), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 89/89 (100%), Positives = 89/89 (100%)

Query: 1  MERGPHPRAAIYAGLQEDRASRRSGQLLTNKSFAKGIANPTKSGVFQTKTRYACMKAGVK 60
          MERGPHPRAAIYAGLQEDRASRRSGQLLTNKSFAKGIANPTKSGVFQTKTRYACMKAGVK
Sbjct: 1  MERGPHPRAAIYAGLQEDRASRRSGQLLTNKSFAKGIANPTKSGVFQTKTRYACMKAGVK 60

Query: 61 RRTATPLFIGRFILLRFVVDHIAQHREQH 89
          RRTATPLFIGRFILLRFVVDHIAQHREQH
Sbjct: 61 RRTATPLFIGRFILLRFVVDHIAQHREQH 89


>UniRef50_A9MSS7 Putative uncharacterized protein n=3 Tax=Salmonella enterica
          subsp. enterica RepID=A9MSS7_SALPB
          Length = 56

 Score = 43.9 bits (102), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/35 (65%), Positives = 24/35 (68%), Gaps = 1/35 (2%)

Query: 55 MKAGVKRRTATPLFIGRFILLRFVVDHIAQHREQH 89
          M+     RTA  LF GR IL RF VDHIAQHREQH
Sbjct: 23 MQNKAAYRTAA-LFRGRVILFRFAVDHIAQHREQH 56


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_P75786 Putative uncharacterized protein yliL n=7 Tax=Es...   162   4e-39
UniRef50_A9MSS7 Putative uncharacterized protein n=3 Tax=Salmone...    57   2e-07

Sequences not found previously or not previously below threshold:


CONVERGED!
>UniRef50_P75786 Putative uncharacterized protein yliL n=7 Tax=Escherichia coli
          RepID=YLIL_ECOLI
          Length = 89

 Score =  162 bits (409), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 89/89 (100%), Positives = 89/89 (100%)

Query: 1  MERGPHPRAAIYAGLQEDRASRRSGQLLTNKSFAKGIANPTKSGVFQTKTRYACMKAGVK 60
          MERGPHPRAAIYAGLQEDRASRRSGQLLTNKSFAKGIANPTKSGVFQTKTRYACMKAGVK
Sbjct: 1  MERGPHPRAAIYAGLQEDRASRRSGQLLTNKSFAKGIANPTKSGVFQTKTRYACMKAGVK 60

Query: 61 RRTATPLFIGRFILLRFVVDHIAQHREQH 89
          RRTATPLFIGRFILLRFVVDHIAQHREQH
Sbjct: 61 RRTATPLFIGRFILLRFVVDHIAQHREQH 89


>UniRef50_A9MSS7 Putative uncharacterized protein n=3 Tax=Salmonella enterica
          subsp. enterica RepID=A9MSS7_SALPB
          Length = 56

 Score = 57.4 bits (137), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/35 (65%), Positives = 24/35 (68%), Gaps = 1/35 (2%)

Query: 55 MKAGVKRRTATPLFIGRFILLRFVVDHIAQHREQH 89
          M+     RTA  LF GR IL RF VDHIAQHREQH
Sbjct: 23 MQNKAAYRTAA-LFRGRVILFRFAVDHIAQHREQH 56


  Database: uniref50.fasta
    Posted date:  Mar 8, 2010 10:38 AM
  Number of letters in database: 1,040,396,356
  Number of sequences in database:  3,077,464
  
Lambda     K      H
   0.318    0.133    0.383 

Lambda     K      H
   0.267   0.0408    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 342,286,280
Number of Sequences: 3077464
Number of extensions: 10809186
Number of successful extensions: 25894
Number of sequences better than 1.0e-01: 2
Number of HSP's better than  0.1 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 25889
Number of HSP's gapped (non-prelim): 4
length of query: 89
length of database: 1,040,396,356
effective HSP length: 59
effective length of query: 30
effective length of database: 858,825,980
effective search space: 25764779400
effective search space used: 25764779400
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.3 bits)
S2: 87 (38.1 bits)