BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (111 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_A8AR73 Universal stress protein B n=112 Tax=Enterobacte... 218 4e-56 UniRef50_A1JSP6 Universal stress protein B n=48 Tax=Enterobacter... 200 1e-50 UniRef50_Q7MQD2 Universal stress protein B homolog n=7 Tax=Vibri... 109 3e-23 UniRef50_A5F4E9 Universal stress protein B homolog n=53 Tax=Gamm... 107 1e-22 UniRef50_Q6ZXD9 VCOO79-like protein (Fragment) n=2 Tax=Vibrionac... 88 1e-16 UniRef50_A6FAL3 Universal stress protein UspB n=1 Tax=Moritella ... 82 6e-15 >UniRef50_A8AR73 Universal stress protein B n=112 Tax=Enterobacteriaceae RepID=USPB_CITK8 Length = 111 Score = 218 bits (556), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 103/111 (92%), Positives = 109/111 (98%) Query: 1 MISTVALFWALCVVCIVNMARYFSSLRALLVVLRNCDPLLYQYVDGGGFFTSHGQPNKQV 60 MISTVALFWALCVVCIVNMARYFSSLRALLVVLR CDPLLYQYVDGGGFFTSHGQPNKQ+ Sbjct: 1 MISTVALFWALCVVCIVNMARYFSSLRALLVVLRGCDPLLYQYVDGGGFFTSHGQPNKQM 60 Query: 61 RLVWYIYAQRYRDHHDDEFIRRCERVRRQFILTSALCGLVVVSLIALMIWH 111 RLVWYIYAQRYRDHHDDEFIRRCERVR QFILTSALCGLV++S++AL+IWH Sbjct: 61 RLVWYIYAQRYRDHHDDEFIRRCERVRGQFILTSALCGLVLISMVALLIWH 111 >UniRef50_A1JSP6 Universal stress protein B n=48 Tax=Enterobacteriaceae RepID=USPB_YERE8 Length = 111 Score = 200 bits (508), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 93/111 (83%), Positives = 105/111 (94%) Query: 1 MISTVALFWALCVVCIVNMARYFSSLRALLVVLRNCDPLLYQYVDGGGFFTSHGQPNKQV 60 MISTVALFWALCVVC++NMARY+SSLRALLVVLR CDPLLYQYVDGGGFFTSHGQP+KQ+ Sbjct: 1 MISTVALFWALCVVCVINMARYYSSLRALLVVLRGCDPLLYQYVDGGGFFTSHGQPSKQI 60 Query: 61 RLVWYIYAQRYRDHHDDEFIRRCERVRRQFILTSALCGLVVVSLIALMIWH 111 RLV YI+AQRY DHHD EFIRRCER+R QFILTSALCGLV+VSL+ L++W+ Sbjct: 61 RLVGYIFAQRYLDHHDPEFIRRCERLRGQFILTSALCGLVMVSLVGLILWY 111 >UniRef50_Q7MQD2 Universal stress protein B homolog n=7 Tax=Vibrio RepID=USPB_VIBVY Length = 107 Score = 109 bits (272), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 48/103 (46%), Positives = 72/103 (69%) Query: 1 MISTVALFWALCVVCIVNMARYFSSLRALLVVLRNCDPLLYQYVDGGGFFTSHGQPNKQV 60 MI+ + +AL VV VN+ARY ++LR+L+ ++R PLLYQ VDG GFFT+HG KQV Sbjct: 1 MINGDIILFALMVVTGVNLARYLTALRSLIYIMREAHPLLYQQVDGNGFFTTHGNVTKQV 60 Query: 61 RLVWYIYAQRYRDHHDDEFIRRCERVRRQFILTSALCGLVVVS 103 RL Y+ ++ Y HHD+ F +C+RVR F+L+ +L G+ +++ Sbjct: 61 RLYHYLKSKEYHHHHDEVFTGKCDRVRELFVLSVSLTGVTLLA 103 >UniRef50_A5F4E9 Universal stress protein B homolog n=53 Tax=Gammaproteobacteria RepID=USPB_VIBC3 Length = 107 Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 51/109 (46%), Positives = 75/109 (68%), Gaps = 2/109 (1%) Query: 1 MISTVALFWALCVVCIVNMARYFSSLRALLVVLRNCDPLLYQYVDGGGFFTSHGQPNKQV 60 MIS + +AL +V +N+ARY ++LR+L+ ++R PLLYQ VDG GFFT+HG KQV Sbjct: 1 MISGDTILFALMLVTAINVARYVTALRSLIYIMREAHPLLYQQVDGRGFFTTHGNVTKQV 60 Query: 61 RLVWYIYAQRYRDHHDDEFIRRCERVRRQFILTSALCGLVVVSLIALMI 109 RL Y+ ++ Y HHD F +C+RVR FIL+ +L LV+ +++A M+ Sbjct: 61 RLYHYLKSREYHHHHDPVFTGKCDRVRELFILSGSL--LVLTTVVAFML 107 >UniRef50_Q6ZXD9 VCOO79-like protein (Fragment) n=2 Tax=Vibrionaceae RepID=Q6ZXD9_PASPI Length = 74 Score = 87.8 bits (216), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 42/74 (56%), Positives = 50/74 (67%) Query: 1 MISTVALFWALCVVCIVNMARYFSSLRALLVVLRNCDPLLYQYVDGGGFFTSHGQPNKQV 60 MIS A AL +V VN ARY S+LR LL+V+R CDPLLYQ VDG GFF S G +KQ+ Sbjct: 1 MISGDAFLLALFLVAAVNTARYVSTLRTLLMVMRECDPLLYQQVDGSGFFKSQGNVSKQI 60 Query: 61 RLVWYIYAQRYRDH 74 RL YI + +Y H Sbjct: 61 RLFHYIRSHQYEKH 74 >UniRef50_A6FAL3 Universal stress protein UspB n=1 Tax=Moritella sp. PE36 RepID=A6FAL3_9GAMM Length = 128 Score = 82.0 bits (201), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 42/108 (38%), Positives = 66/108 (61%) Query: 1 MISTVALFWALCVVCIVNMARYFSSLRALLVVLRNCDPLLYQYVDGGGFFTSHGQPNKQV 60 M ++ +F A ++ ++N+AR SSLR LL +++ DPLLYQ V+G FF + G +KQ+ Sbjct: 17 MNNSDLIFIAFSIITLINVARAVSSLRCLLYRMKDIDPLLYQRVNGRVFFNTEGNYSKQM 76 Query: 61 RLVWYIYAQRYRDHHDDEFIRRCERVRRQFILTSALCGLVVVSLIALM 108 +L YI + H D+ FI RC +V++ F L S L ++ + ALM Sbjct: 77 QLFHYIRRNEHLHHFDEYFIYRCNKVKKIFTLASYLVAANILLIPALM 124 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_A8AR73 Universal stress protein B n=112 Tax=Enterobacte... 165 4e-40 UniRef50_A1JSP6 Universal stress protein B n=48 Tax=Enterobacter... 161 7e-39 UniRef50_A5F4E9 Universal stress protein B homolog n=53 Tax=Gamm... 141 5e-33 UniRef50_Q7MQD2 Universal stress protein B homolog n=7 Tax=Vibri... 140 1e-32 UniRef50_A6FAL3 Universal stress protein UspB n=1 Tax=Moritella ... 137 8e-32 UniRef50_Q6ZXD9 VCOO79-like protein (Fragment) n=2 Tax=Vibrionac... 105 4e-22 Sequences not found previously or not previously below threshold: CONVERGED! >UniRef50_A8AR73 Universal stress protein B n=112 Tax=Enterobacteriaceae RepID=USPB_CITK8 Length = 111 Score = 165 bits (418), Expect = 4e-40, Method: Composition-based stats. Identities = 103/111 (92%), Positives = 109/111 (98%) Query: 1 MISTVALFWALCVVCIVNMARYFSSLRALLVVLRNCDPLLYQYVDGGGFFTSHGQPNKQV 60 MISTVALFWALCVVCIVNMARYFSSLRALLVVLR CDPLLYQYVDGGGFFTSHGQPNKQ+ Sbjct: 1 MISTVALFWALCVVCIVNMARYFSSLRALLVVLRGCDPLLYQYVDGGGFFTSHGQPNKQM 60 Query: 61 RLVWYIYAQRYRDHHDDEFIRRCERVRRQFILTSALCGLVVVSLIALMIWH 111 RLVWYIYAQRYRDHHDDEFIRRCERVR QFILTSALCGLV++S++AL+IWH Sbjct: 61 RLVWYIYAQRYRDHHDDEFIRRCERVRGQFILTSALCGLVLISMVALLIWH 111 >UniRef50_A1JSP6 Universal stress protein B n=48 Tax=Enterobacteriaceae RepID=USPB_YERE8 Length = 111 Score = 161 bits (407), Expect = 7e-39, Method: Composition-based stats. Identities = 93/111 (83%), Positives = 105/111 (94%) Query: 1 MISTVALFWALCVVCIVNMARYFSSLRALLVVLRNCDPLLYQYVDGGGFFTSHGQPNKQV 60 MISTVALFWALCVVC++NMARY+SSLRALLVVLR CDPLLYQYVDGGGFFTSHGQP+KQ+ Sbjct: 1 MISTVALFWALCVVCVINMARYYSSLRALLVVLRGCDPLLYQYVDGGGFFTSHGQPSKQI 60 Query: 61 RLVWYIYAQRYRDHHDDEFIRRCERVRRQFILTSALCGLVVVSLIALMIWH 111 RLV YI+AQRY DHHD EFIRRCER+R QFILTSALCGLV+VSL+ L++W+ Sbjct: 61 RLVGYIFAQRYLDHHDPEFIRRCERLRGQFILTSALCGLVMVSLVGLILWY 111 >UniRef50_A5F4E9 Universal stress protein B homolog n=53 Tax=Gammaproteobacteria RepID=USPB_VIBC3 Length = 107 Score = 141 bits (357), Expect = 5e-33, Method: Composition-based stats. Identities = 51/109 (46%), Positives = 75/109 (68%), Gaps = 2/109 (1%) Query: 1 MISTVALFWALCVVCIVNMARYFSSLRALLVVLRNCDPLLYQYVDGGGFFTSHGQPNKQV 60 MIS + +AL +V +N+ARY ++LR+L+ ++R PLLYQ VDG GFFT+HG KQV Sbjct: 1 MISGDTILFALMLVTAINVARYVTALRSLIYIMREAHPLLYQQVDGRGFFTTHGNVTKQV 60 Query: 61 RLVWYIYAQRYRDHHDDEFIRRCERVRRQFILTSALCGLVVVSLIALMI 109 RL Y+ ++ Y HHD F +C+RVR FIL+ +L LV+ +++A M+ Sbjct: 61 RLYHYLKSREYHHHHDPVFTGKCDRVRELFILSGSL--LVLTTVVAFML 107 >UniRef50_Q7MQD2 Universal stress protein B homolog n=7 Tax=Vibrio RepID=USPB_VIBVY Length = 107 Score = 140 bits (354), Expect = 1e-32, Method: Composition-based stats. Identities = 48/103 (46%), Positives = 72/103 (69%) Query: 1 MISTVALFWALCVVCIVNMARYFSSLRALLVVLRNCDPLLYQYVDGGGFFTSHGQPNKQV 60 MI+ + +AL VV VN+ARY ++LR+L+ ++R PLLYQ VDG GFFT+HG KQV Sbjct: 1 MINGDIILFALMVVTGVNLARYLTALRSLIYIMREAHPLLYQQVDGNGFFTTHGNVTKQV 60 Query: 61 RLVWYIYAQRYRDHHDDEFIRRCERVRRQFILTSALCGLVVVS 103 RL Y+ ++ Y HHD+ F +C+RVR F+L+ +L G+ +++ Sbjct: 61 RLYHYLKSKEYHHHHDEVFTGKCDRVRELFVLSVSLTGVTLLA 103 >UniRef50_A6FAL3 Universal stress protein UspB n=1 Tax=Moritella sp. PE36 RepID=A6FAL3_9GAMM Length = 128 Score = 137 bits (346), Expect = 8e-32, Method: Composition-based stats. Identities = 42/108 (38%), Positives = 66/108 (61%) Query: 1 MISTVALFWALCVVCIVNMARYFSSLRALLVVLRNCDPLLYQYVDGGGFFTSHGQPNKQV 60 M ++ +F A ++ ++N+AR SSLR LL +++ DPLLYQ V+G FF + G +KQ+ Sbjct: 17 MNNSDLIFIAFSIITLINVARAVSSLRCLLYRMKDIDPLLYQRVNGRVFFNTEGNYSKQM 76 Query: 61 RLVWYIYAQRYRDHHDDEFIRRCERVRRQFILTSALCGLVVVSLIALM 108 +L YI + H D+ FI RC +V++ F L S L ++ + ALM Sbjct: 77 QLFHYIRRNEHLHHFDEYFIYRCNKVKKIFTLASYLVAANILLIPALM 124 >UniRef50_Q6ZXD9 VCOO79-like protein (Fragment) n=2 Tax=Vibrionaceae RepID=Q6ZXD9_PASPI Length = 74 Score = 105 bits (262), Expect = 4e-22, Method: Composition-based stats. Identities = 42/74 (56%), Positives = 50/74 (67%) Query: 1 MISTVALFWALCVVCIVNMARYFSSLRALLVVLRNCDPLLYQYVDGGGFFTSHGQPNKQV 60 MIS A AL +V VN ARY S+LR LL+V+R CDPLLYQ VDG GFF S G +KQ+ Sbjct: 1 MISGDAFLLALFLVAAVNTARYVSTLRTLLMVMRECDPLLYQQVDGSGFFKSQGNVSKQI 60 Query: 61 RLVWYIYAQRYRDH 74 RL YI + +Y H Sbjct: 61 RLFHYIRSHQYEKH 74 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.328 0.149 0.436 Lambda K H 0.267 0.0454 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 444,662,844 Number of Sequences: 3077464 Number of extensions: 17110594 Number of successful extensions: 81531 Number of sequences better than 1.0e-01: 6 Number of HSP's better than 0.1 without gapping: 12 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 81519 Number of HSP's gapped (non-prelim): 12 length of query: 111 length of database: 1,040,396,356 effective HSP length: 79 effective length of query: 32 effective length of database: 797,276,700 effective search space: 25512854400 effective search space used: 25512854400 T: 11 A: 40 X1: 16 ( 7.6 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.2 bits) S2: 87 (38.0 bits)