BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (692 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P19323 Formate hydrogenlyase transcriptional activator ... 1426 0.0 UniRef50_P40734 Formate hydrogenlyase transcriptional activator ... 1289 0.0 UniRef50_Q2RXL4 Transcriptional regulator, NifA subfamily, Fis f... 536 e-150 UniRef50_P71229 Hydrogenase-4 transcriptional activator n=45 Tax... 520 e-145 UniRef50_Q026M7 Transcriptional regulator, NifA subfamily, Fis F... 469 e-130 UniRef50_A0KL56 Formate hydrogenlyase transcriptional activator ... 469 e-130 UniRef50_Q1ZUC7 Formate hydrogenlyase transcriptional activator ... 466 e-129 UniRef50_Q1ZGP7 Formate hydrogen-lyase transcriptional activator... 442 e-122 UniRef50_D0Z425 Formate hydrogenlyase transcriptional activator ... 437 e-121 UniRef50_A7HFP7 Transcriptional regulator, NifA subfamily, Fis F... 412 e-113 UniRef50_UPI00016C3921 transcriptional regulator, NifA subfamily... 403 e-110 UniRef50_C3X424 Transcriptional regulator containing GAF n=2 Tax... 402 e-110 UniRef50_C1F0X6 Sigma-54 dependent transcriptional regulator, Fi... 393 e-107 UniRef50_Q022Z3 Transcriptional regulator, Fis family n=1 Tax=Ca... 366 2e-99 UniRef50_Q39TT6 Transcriptional regulator, Fis family / DNA-bind... 361 6e-98 UniRef50_C7PQF6 Transcriptional regulator, NifA subfamily, Fis F... 356 1e-96 UniRef50_D2QGL7 Two component, sigma54 specific, transcriptional... 356 2e-96 UniRef50_A6EHC4 Sigma-54-dependent transcriptional regulator n=1... 353 1e-95 UniRef50_Q39TH4 Transcriptional regulator, NifA subfamily, Fis f... 353 2e-95 UniRef50_C6W352 Sigma54 specific transcriptional regulator, Fis ... 350 1e-94 UniRef50_A8ZV27 Transcriptional regulator, Fis family n=2 Tax=De... 348 5e-94 UniRef50_B5EIR5 Transcriptional regulator, NifA subfamily, Fis F... 347 1e-93 UniRef50_C7PN78 Sigma54 specific transcriptional regulator, Fis ... 346 2e-93 UniRef50_C6VTN7 Sigma 54 interacting domain protein n=1 Tax=Dyad... 345 3e-93 UniRef50_A8IQ96 Transcriptional regulator n=18 Tax=Proteobacteri... 343 1e-92 UniRef50_C7LPL8 Sigma54 specific transcriptional regulator with ... 343 1e-92 UniRef50_B3U4Q6 Nif-specific regulatory protein n=3 Tax=Bacteria... 341 5e-92 UniRef50_Q1PYB5 Similar to sigma 54 response regulatory protein ... 339 2e-91 UniRef50_Q086E2 Two component, sigma54 specific, transcriptional... 337 1e-90 UniRef50_UPI00016C5695 DNA-binding protein Fis / transcriptional... 337 1e-90 UniRef50_C7PEX2 Sigma54 specific transcriptional regulator, Fis ... 337 1e-90 UniRef50_D2QLL9 Transcriptional regulator, NifA subfamily, Fis F... 336 1e-90 UniRef50_A0LIA2 Sigma54 specific transcriptional regulator, Fis ... 335 3e-90 UniRef50_B4DAQ1 Transcriptional regulator, NifA subfamily, Fis F... 333 9e-90 UniRef50_A7H973 Sigma54 specific transcriptional regulator, Fis ... 333 1e-89 UniRef50_B5WAL2 PAS modulated sigma54 specific transcriptional r... 332 2e-89 UniRef50_Q2LUG3 Transcriptional regulator containing GAF, AAA-ty... 332 4e-89 UniRef50_C7LTG8 Sigma54 specific transcriptional regulator with ... 330 1e-88 UniRef50_C1ZA32 Transcriptional regulator containing GAF, AAA-ty... 330 1e-88 UniRef50_A4SC79 DNA-binding protein Fis / transcriptional regula... 329 3e-88 UniRef50_C2KAU4 Sigma-54-dependent transcriptional regulator n=1... 326 2e-87 UniRef50_B8FJD2 Transcriptional regulator, NifA subfamily, Fis F... 324 6e-87 UniRef50_A5G4X7 Transcriptional regulator, NifA subfamily, Fis F... 323 2e-86 UniRef50_D2R1I6 Sigma 54 interacting domain protein n=1 Tax=Pire... 321 7e-86 UniRef50_A4CKT3 Transcriptional regulator, NifA subfamily, Fis F... 317 9e-85 UniRef50_A0YEC8 Transcriptional regulatory protein n=2 Tax=Prote... 316 2e-84 UniRef50_A1AL12 Transcriptional regulator, Fis family n=1 Tax=Pe... 315 5e-84 UniRef50_A1ALJ3 Sigma-54 factor, interaction domain-containing p... 314 9e-84 UniRef50_C6VVC1 Sigma54 specific transcriptional regulator, Fis ... 313 1e-83 UniRef50_B8FB78 Transcriptional regulator, NifA subfamily, Fis F... 313 1e-83 UniRef50_C7LQX0 Sigma54 specific transcriptional regulator with ... 313 1e-83 UniRef50_C5S9Z4 Transcriptional regulator, NifA subfamily, Fis F... 312 3e-83 UniRef50_B9XM81 Sigma54 specific transcriptional regulator with ... 311 5e-83 UniRef50_Q1DC06 Sigma-54 dependent transcriptional regulator, Fi... 310 1e-82 UniRef50_Q2LPT8 Transcriptional regulator, sigma-54-dependent n=... 310 1e-82 UniRef50_Q2LRC8 Transcriptional regulator containing sigma 54 in... 309 2e-82 UniRef50_Q1N5U9 Sigma-54 dependent transcriptional regulator/sen... 309 3e-82 UniRef50_Q2IQU1 Transcriptional regulator, NifA subfamily, Fis f... 307 8e-82 UniRef50_B8FLD5 Transcriptional regulator, NifA subfamily, Fis F... 307 9e-82 UniRef50_A6EHB3 Sigma-54-dependent transcriptional regulator n=1... 307 1e-81 UniRef50_C8X5B4 Transcriptional regulator, NifA subfamily, Fis F... 305 5e-81 UniRef50_C7PBZ0 Two component, sigma54 specific, transcriptional... 304 1e-80 UniRef50_D0LFQ8 Two component, sigma54 specific, transcriptional... 303 1e-80 UniRef50_C0QE85 FhlA n=1 Tax=Desulfobacterium autotrophicum HRM2... 303 2e-80 UniRef50_B8F9P9 Sigma 54 interacting domain protein n=1 Tax=Desu... 302 3e-80 UniRef50_Q12K16 DNA-binding protein Fis / transcriptional regula... 301 4e-80 UniRef50_C6E9E0 Two component, sigma54 specific, transcriptional... 301 5e-80 UniRef50_Q2IEG0 Transcriptional regulator, Fis family / DNA-bind... 301 8e-80 UniRef50_B8FD65 Sigma54 specific transcriptional regulator, Fis ... 301 8e-80 UniRef50_A6EHC6 Transcriptional regulator, NifA subfamily, Fis F... 300 1e-79 UniRef50_C5BI62 Transcriptional regulator, Fis family n=5 Tax=Ga... 299 2e-79 UniRef50_B0SC18 Transcriptional regulator n=7 Tax=Bacteria RepID... 299 2e-79 UniRef50_B5JMU1 Sigma-54 interaction domain family n=1 Tax=Verru... 297 8e-79 UniRef50_C7PQF7 Two component, sigma54 specific, transcriptional... 296 1e-78 UniRef50_B8FJT8 Two component, sigma54 specific, transcriptional... 296 2e-78 UniRef50_B8GM58 Transcriptional regulator, NifA subfamily, Fis F... 295 4e-78 UniRef50_B2V8F5 Two component, sigma54 specific, transcriptional... 295 4e-78 UniRef50_C7PLV9 Sigma54 specific transcriptional regulator, Fis ... 294 6e-78 UniRef50_C0QMI0 Sigma-54 dependent two component transcriptional... 294 8e-78 UniRef50_C8X5C3 Sigma54 specific transcriptional regulator, Fis ... 294 1e-77 UniRef50_A8ZZC1 Transcriptional regulator, NifA subfamily, Fis F... 293 2e-77 UniRef50_Q3A356 Two component, sigma54 specific, transcriptional... 293 2e-77 UniRef50_B8DJ70 Sigma54 specific transcriptional regulator, Fis ... 292 3e-77 UniRef50_A8FQ36 Formate hydrogenlyase transcriptional activator,... 291 5e-77 UniRef50_Q4K714 Sigma-54 dependent DNA-binding response regulato... 291 5e-77 UniRef50_C0Q938 Sigma-54 dependent DNA-binding response regulato... 291 7e-77 UniRef50_A9G320 Sigma-54 dependent transcriptional regulator n=1... 290 1e-76 UniRef50_A8UFP5 Sigma54 specific transcriptional regulator with ... 290 1e-76 UniRef50_A5G9U3 Two component, sigma54 specific, transcriptional... 290 1e-76 UniRef50_C0QC42 Putative transcriptional activator n=1 Tax=Desul... 289 2e-76 UniRef50_Q2LXW8 Nif-specific regulatory protein with sigma 54 in... 288 4e-76 UniRef50_B3QSR6 Transcriptional regulator, NifA, Fis Family n=2 ... 288 4e-76 UniRef50_Q2LSK2 Sigma-54 dependent transcriptional regulator n=4... 288 5e-76 UniRef50_A7HIM1 Two component, sigma54 specific, transcriptional... 288 6e-76 UniRef50_Q7M8U4 TRANSCRIPTIONAL REGULATOR (NIFA FAMILY) n=1 Tax=... 288 7e-76 UniRef50_C8W392 Two component, sigma54 specific, transcriptional... 288 7e-76 UniRef50_A6EHC5 Two component, sigma54 specific, transcriptional... 287 1e-75 UniRef50_B2S230 Formate hydrogenlyase transcriptional activator ... 287 1e-75 UniRef50_Q73KY8 Sigma-54 dependent transcriptional regulator, pu... 287 1e-75 UniRef50_B8IZ98 Transcriptional regulator, NifA subfamily, Fis F... 287 1e-75 UniRef50_UPI00016C4268 cetoacetate metabolism regulatory protein... 286 1e-75 UniRef50_A7HI74 Sigma54 specific transcriptional regulator, Fis ... 286 2e-75 UniRef50_Q2RHS4 Sigma54 specific transcriptional regulator, Fis ... 286 2e-75 UniRef50_A4J616 Two component, sigma54 specific, transcriptional... 286 2e-75 UniRef50_D2QRC3 Sigma 54 interacting domain protein n=1 Tax=Spir... 285 4e-75 UniRef50_B3E7V2 Two component, sigma54 specific, transcriptional... 285 4e-75 UniRef50_B3DYD7 DNA-binding response regulator, NtrC family (Con... 284 1e-74 UniRef50_Q3J8M6 Sigma-54 specific, transcriptional regulator, Fi... 283 2e-74 UniRef50_C6HY50 Sigma54 specific transcriptional regulator, Fis ... 283 2e-74 UniRef50_B8FMY7 Sigma54 specific transcriptional regulator, Fis ... 282 3e-74 UniRef50_A0LFR7 Transcriptional regulator, NifA subfamily, Fis F... 282 4e-74 UniRef50_A3ESE7 Sigma54 specific transcriptional regulator, Fis ... 281 4e-74 UniRef50_Q893M0 Putative sigma-54 interacting protein n=1 Tax=Cl... 281 8e-74 UniRef50_Q027A1 Two component, sigma54 specific, transcriptional... 280 9e-74 UniRef50_A9G6P0 Sigma-54 dependent DNA-binding response regulato... 280 1e-73 UniRef50_C0GUF2 Sigma54 specific transcriptional regulator, Fis ... 278 4e-73 UniRef50_B8FCN8 Transcriptional regulator, NifA subfamily, Fis F... 278 4e-73 UniRef50_B3DZ60 DNA-binding response regulator, NtrC family (Con... 278 4e-73 UniRef50_D1RLY9 Transcriptional regulator FleQ n=1 Tax=Legionell... 278 6e-73 UniRef50_B8JEK1 Sensor protein n=14 Tax=cellular organisms RepID... 278 6e-73 UniRef50_Q1PYM7 Similar to sigma 54 response regulator n=1 Tax=C... 278 7e-73 UniRef50_C0GRG2 PAS modulated sigma54 specific transcriptional r... 278 7e-73 UniRef50_Q1PYI3 Strongly similar to sigma 54 response regulatory... 278 8e-73 UniRef50_C3ICC4 Sigma54 specific transcriptional regulator, Fis ... 277 8e-73 UniRef50_B6WRE4 Putative uncharacterized protein n=1 Tax=Desulfo... 277 8e-73 UniRef50_A7HBA5 Two component, sigma54 specific, transcriptional... 277 1e-72 UniRef50_A6DT60 Sigma-54 dependent transcriptional regulator/res... 277 1e-72 UniRef50_C0GSE0 Sigma54 specific transcriptional regulator, Fis ... 277 1e-72 UniRef50_A9AYA4 Two component, sigma54 specific, transcriptional... 277 1e-72 UniRef50_C9RBQ4 Two component, sigma54 specific, transcriptional... 277 1e-72 UniRef50_C9S238 PAS modulated sigma54 specific transcriptional r... 276 2e-72 UniRef50_Q1D6H5 Sigma-54 dependent DNA-binding response regulato... 276 2e-72 UniRef50_B3Q676 Transcriptional regulator, NifA subfamily, Fis F... 276 2e-72 UniRef50_Q1INE5 Two component, sigma54 specific, transcriptional... 276 2e-72 UniRef50_C1A631 Putative NtrC family two-component response regu... 276 2e-72 UniRef50_Q2LRW3 Response regulator containing sigma 54 interacti... 276 2e-72 UniRef50_A4J443 Two component, sigma54 specific, transcriptional... 276 2e-72 UniRef50_B5ER80 Transcriptional regulator, NifA, Fis Family n=2 ... 276 3e-72 UniRef50_P30667 Nif-specific regulatory protein n=6 Tax=Bacteria... 276 3e-72 UniRef50_B8FEY3 Two component, sigma54 specific, transcriptional... 275 3e-72 UniRef50_B4UM36 Two component, sigma54 specific, transcriptional... 275 4e-72 UniRef50_B5YI42 AdnA n=3 Tax=Bacteria RepID=B5YI42_THEYD 275 4e-72 UniRef50_A5G703 Two component, sigma-54 specific, transcriptiona... 275 5e-72 UniRef50_C8WZC4 Two component, sigma54 specific, transcriptional... 275 6e-72 UniRef50_Q1Q6P9 Similar to Sigma-54 dependent transcriptional re... 275 6e-72 UniRef50_Q1PZ68 Strongly similar to sigma 54 response regulator ... 275 6e-72 UniRef50_D0MEW0 Transcriptional regulator, NifA subfamily, Fis F... 275 6e-72 UniRef50_C7PDE5 Sigma54 specific transcriptional regulator, Fis ... 275 6e-72 UniRef50_O06645 Putative transcriptional activator HbpR n=1 Tax=... 275 6e-72 UniRef50_Q6MMW8 Acetoacetate metabolism regulatory protein atoC ... 275 6e-72 UniRef50_Q1D5E1 Sigma-54 dependent transcriptional regulator, Fi... 274 8e-72 UniRef50_B9ZRC2 Transcriptional regulator, Fis family n=2 Tax=Ch... 274 8e-72 UniRef50_P27713 Nif-specific regulatory protein n=3 Tax=Burkhold... 274 9e-72 UniRef50_B0K647 Sigma54 specific transcriptional regulator, Fis ... 274 9e-72 UniRef50_P05407 Nif-specific regulatory protein n=11 Tax=Rhizobi... 274 1e-71 UniRef50_Q1PYK0 Strongly similar to sigma 54 response regulator ... 273 1e-71 UniRef50_C4XJ05 Fis family transcriptional regulator n=2 Tax=Des... 273 2e-71 UniRef50_A5D2K0 Transcriptional regulator n=2 Tax=Clostridia Rep... 273 2e-71 UniRef50_D1R5K3 Putative uncharacterized protein n=1 Tax=Parachl... 273 2e-71 UniRef50_Q3AR86 DNA-binding protein Fis / transcriptional regula... 273 2e-71 UniRef50_A0LJL7 Two component, sigma54 specific, transcriptional... 273 2e-71 UniRef50_C9RS71 Transcriptional regulator, NifA subfamily, Fis F... 272 3e-71 UniRef50_C3WG76 Sigma-54 dependent transcriptional regulator n=2... 272 3e-71 UniRef50_P12626 Nitrogen fixation protein anfA n=11 Tax=Bacteria... 272 3e-71 UniRef50_Q0SQI9 Phosphocarrier HPr/sensory box protein/sigma-54 ... 272 3e-71 UniRef50_D0LWE6 Transcriptional regulator, NifA subfamily, Fis F... 272 3e-71 UniRef50_B5YL21 Acetoacetate metabolism regulatory protein AtoC ... 272 4e-71 UniRef50_Q1JZC1 Two component, sigma54 specific, transcriptional... 272 4e-71 UniRef50_C9KM56 Sigma-54 dependent transcriptional regulator/sen... 271 5e-71 UniRef50_C7LR14 PAS modulated sigma54 specific transcriptional r... 271 5e-71 UniRef50_C7LX45 Transcriptional regulator, NifA subfamily, Fis F... 271 6e-71 UniRef50_B8FGF3 Sigma54 specific transcriptional regulator, Fis ... 271 6e-71 UniRef50_B5ZJF6 Transcriptional regulator, NifA, Fis Family n=4 ... 271 6e-71 UniRef50_D2R4F1 Sigma54 specific transcriptional regulator, Fis ... 271 7e-71 UniRef50_B8FXH0 PAS modulated sigma54 specific transcriptional r... 271 7e-71 UniRef50_B8IZX3 Transcriptional regulator, NifA subfamily, Fis F... 271 7e-71 UniRef50_D1CFK1 Two component, sigma54 specific, transcriptional... 271 9e-71 UniRef50_A0LFW8 Two component, sigma54 specific, transcriptional... 270 1e-70 UniRef50_B9M8I7 PAS modulated sigma54 specific transcriptional r... 270 1e-70 UniRef50_D2UDB2 Probable flagellar sigma-54 dependent transcript... 270 1e-70 UniRef50_C4FI59 AAA family ATPase n=1 Tax=Sulfurihydrogenibium y... 270 1e-70 UniRef50_Q2LUG8 Response regulator containing CheY-like receiver... 270 2e-70 UniRef50_A8ZZQ7 Sigma-54 factor interaction domain-containing pr... 270 2e-70 UniRef50_B8DQY9 Transcriptional regulator, NifA subfamily, Fis F... 269 2e-70 UniRef50_Q9APD9 Transcriptional regulatory protein zraR n=89 Tax... 269 2e-70 UniRef50_D2TTF4 Two-component system response regulator n=3 Tax=... 269 2e-70 UniRef50_A4VMJ3 Transcriptional regulator FleQ n=69 Tax=Gammapro... 269 2e-70 UniRef50_B1ZR63 Two component, sigma54 specific, transcriptional... 269 3e-70 UniRef50_Q8Z333 Transcriptional regulatory protein zraR n=36 Tax... 269 3e-70 UniRef50_Q7UE04 Cetoacetate metabolism regulatory protein atoC n... 269 3e-70 UniRef50_Q1PV55 Strongly similar to sigma 54 response regulator ... 269 3e-70 UniRef50_B4U9N2 Transcriptional regulator, NifA subfamily, Fis F... 268 4e-70 UniRef50_UPI00016C44AF cetoacetate metabolism regulatory protein... 268 4e-70 UniRef50_Q6ALT7 Related to two-component system response regulat... 268 4e-70 UniRef50_C1PBV8 Putative sigma54 specific transcriptional regula... 268 5e-70 UniRef50_Q1NW39 Nif-specific regulatory protein n=2 Tax=Deltapro... 268 5e-70 UniRef50_Q53206 Nif-specific regulatory protein n=5 Tax=Alphapro... 268 5e-70 UniRef50_A9DEH7 PAS domain:sigma-54-dependent transcriptional re... 268 6e-70 UniRef50_Q897M6 Transcriptional regulatory protein n=1 Tax=Clost... 268 6e-70 UniRef50_Q3ABV5 Sigma-54 dependent transcriptional regulator n=3... 268 7e-70 UniRef50_B3DZA5 Transcriptional regulator NifA, contains GAF, AA... 268 7e-70 UniRef50_Q1D245 Sigma-54 dependent DNA-binding response regulato... 268 7e-70 UniRef50_A6TCX4 Anaerobic nitric oxide reductase transcription r... 267 8e-70 UniRef50_D0LSM1 Transcriptional regulator, NifA subfamily, Fis F... 267 8e-70 UniRef50_Q2LXQ0 Response regulator with sigma 54 interaction dom... 267 9e-70 UniRef50_B5Y7I9 Acetoacetate metabolism regulatory protein AtoC ... 267 9e-70 UniRef50_Q2RVQ1 Transcriptional regulator, NifA, Fis family n=3 ... 267 1e-69 UniRef50_A6C332 Two component, sigma54 specific, transcriptional... 267 1e-69 UniRef50_Q06065 Acetoacetate metabolism regulatory protein atoC ... 267 1e-69 UniRef50_C1SIN5 Response regulator with CheY-like receiver, AAA-... 267 1e-69 UniRef50_C1SI14 Transcriptional regulator containing GAF, AAA-ty... 267 1e-69 UniRef50_Q1D552 Sigma-54 dependent DNA-binding reponse regulator... 267 1e-69 UniRef50_C0QF87 Transcriptional regulator (PAS/PAC domain protei... 266 2e-69 UniRef50_B8FJU0 Two component, sigma54 specific, transcriptional... 266 2e-69 UniRef50_C9S255 Proprionate catabolism activator, Fis family n=2... 266 2e-69 UniRef50_Q01Q08 Two component, sigma54 specific, transcriptional... 266 2e-69 UniRef50_Q1IRB0 Two component, sigma54 specific, transcriptional... 266 2e-69 UniRef50_C8QWL5 Transcriptional regulator, NifA, Fis Family n=1 ... 266 2e-69 UniRef50_B5EFV3 Two component, sigma54 specific, transcriptional... 266 2e-69 UniRef50_C1SIC3 Transcriptional regulator containing GAF, AAA-ty... 266 2e-69 UniRef50_Q1PVM8 Similar to sigma-54 dependent transcriptional re... 266 3e-69 UniRef50_C0GSN4 Transcriptional regulator, NifA subfamily, Fis F... 266 3e-69 UniRef50_Q17ZX8 Putative sigma-54 interacting protein n=8 Tax=Cl... 266 3e-69 UniRef50_B5YH04 Transcriptional regulator n=1 Tax=Thermodesulfov... 265 3e-69 UniRef50_B6YRB5 Nif-specific regulatory protein n=1 Tax=Candidat... 265 3e-69 UniRef50_B3E8H3 Two component, sigma54 specific, transcriptional... 265 3e-69 UniRef50_Q2RKJ6 Sigma54 specific transcriptional regulator with ... 265 4e-69 UniRef50_B3E4E8 Putative sigma54 specific transcriptional regula... 265 4e-69 UniRef50_D2MK88 Formate hydrogenlyase transcriptional activator ... 265 5e-69 UniRef50_C1ZB08 Sigma-54 interacting regulator n=1 Tax=Planctomy... 265 5e-69 UniRef50_B8DLN3 Two component, sigma54 specific, transcriptional... 265 5e-69 UniRef50_B2S3B3 Response regulatory protein n=28 Tax=Spirochaeta... 265 6e-69 UniRef50_Q3A2M3 Two component, sigma54 specific, transcriptional... 265 6e-69 UniRef50_D0LQ47 Sigma54 specific transcriptional regulator, Fis ... 264 7e-69 UniRef50_A1ATK4 Two component, sigma54 specific, transcriptional... 264 7e-69 UniRef50_UPI00016C4DD7 sigma-54 dependent transcriptional regula... 264 7e-69 UniRef50_C9XRA6 Probable sigma54-dependent transcriptional regul... 264 8e-69 UniRef50_C1A568 Putative NtrC family two-component response regu... 264 8e-69 UniRef50_A5GBB3 Two component, sigma-54 specific, transcriptiona... 264 8e-69 UniRef50_D2R8T8 Two component, sigma54 specific, transcriptional... 264 8e-69 UniRef50_Q2IQM1 Two component, sigma54 specific, transcriptional... 264 9e-69 UniRef50_A6LVD4 Sigma54 specific transcriptional regulator, Fis ... 264 1e-68 UniRef50_C8X1R7 PAS modulated sigma54 specific transcriptional r... 264 1e-68 UniRef50_Q306N7 PilR2 n=17 Tax=Deltaproteobacteria RepID=Q306N7_... 264 1e-68 UniRef50_B8GTB8 Two component, sigma54 specific, transcriptional... 263 1e-68 UniRef50_B5YHK7 SasR n=1 Tax=Thermodesulfovibrio yellowstonii DS... 263 1e-68 UniRef50_C8QYP0 Two component, sigma54 specific, transcriptional... 263 1e-68 UniRef50_Q1JW16 Sigma54 specific transcriptional regulator, Fis ... 263 2e-68 UniRef50_A5F6B9 Flagellar regulatory protein A n=61 Tax=Gammapro... 263 2e-68 UniRef50_A3ER00 Transcriptional regulator, NifA, Fis Family n=3 ... 263 2e-68 >UniRef50_P19323 Formate hydrogenlyase transcriptional activator n=72 Tax=Enterobacteriaceae RepID=FHLA_ECOLI Length = 692 Score = 1426 bits (3691), Expect = 0.0, Method: Compositional matrix adjust. Identities = 692/692 (100%), Positives = 692/692 (100%) Query: 1 MSYTPMSDLGQQGLFDITRTLLQQPDLASLCEALSQLVKRSALADNAAIVLWQAQTQRAS 60 MSYTPMSDLGQQGLFDITRTLLQQPDLASLCEALSQLVKRSALADNAAIVLWQAQTQRAS Sbjct: 1 MSYTPMSDLGQQGLFDITRTLLQQPDLASLCEALSQLVKRSALADNAAIVLWQAQTQRAS 60 Query: 61 YYASREKDTPIKYEDETVLAHGPVRSILSRPDTLHCSYEEFCETWPQLDAGGLYPKFGHY 120 YYASREKDTPIKYEDETVLAHGPVRSILSRPDTLHCSYEEFCETWPQLDAGGLYPKFGHY Sbjct: 61 YYASREKDTPIKYEDETVLAHGPVRSILSRPDTLHCSYEEFCETWPQLDAGGLYPKFGHY 120 Query: 121 CLMPLAAEGHIFGGCEFIRYDDRPWSEKEFNRLQTFTQIVSVVTEQIQSRVVNNVDYELL 180 CLMPLAAEGHIFGGCEFIRYDDRPWSEKEFNRLQTFTQIVSVVTEQIQSRVVNNVDYELL Sbjct: 121 CLMPLAAEGHIFGGCEFIRYDDRPWSEKEFNRLQTFTQIVSVVTEQIQSRVVNNVDYELL 180 Query: 181 CRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYST 240 CRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYST Sbjct: 181 CRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYST 240 Query: 241 HYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTL 300 HYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTL Sbjct: 241 HYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTL 300 Query: 301 CLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERL 360 CLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERL Sbjct: 301 CLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERL 360 Query: 361 VDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIAR 420 VDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIAR Sbjct: 361 VDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIAR 420 Query: 421 AIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLD 480 AIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLD Sbjct: 421 AIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLD 480 Query: 481 EVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYY 540 EVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYY Sbjct: 481 EVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYY 540 Query: 541 RLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRE 600 RLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRE Sbjct: 541 RLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRE 600 Query: 601 LENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVV 660 LENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVV Sbjct: 601 LENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVV 660 Query: 661 AGPKGAAQRLGLKRTTLLSRMKRLGIDKSALI 692 AGPKGAAQRLGLKRTTLLSRMKRLGIDKSALI Sbjct: 661 AGPKGAAQRLGLKRTTLLSRMKRLGIDKSALI 692 >UniRef50_P40734 Formate hydrogenlyase transcriptional activator n=63 Tax=Enterobacteriaceae RepID=FHLA_SALTY Length = 692 Score = 1289 bits (3335), Expect = 0.0, Method: Compositional matrix adjust. Identities = 625/691 (90%), Positives = 653/691 (94%) Query: 1 MSYTPMSDLGQQGLFDITRTLLQQPDLASLCEALSQLVKRSALADNAAIVLWQAQTQRAS 60 MSYTPMSDLGQQGLFDITRTLLQQPDLASL EALSQLVKRSALAD+A IVLWQAQ+QRA Sbjct: 1 MSYTPMSDLGQQGLFDITRTLLQQPDLASLSEALSQLVKRSALADSAGIVLWQAQSQRAQ 60 Query: 61 YYASREKDTPIKYEDETVLAHGPVRSILSRPDTLHCSYEEFCETWPQLDAGGLYPKFGHY 120 YYA+RE P++YEDETVLAHGPVR ILSRPD LHC++ EF ETWPQL A GLYP+FGHY Sbjct: 61 YYATRENGRPVEYEDETVLAHGPVRRILSRPDALHCNFHEFTETWPQLAASGLYPEFGHY 120 Query: 121 CLMPLAAEGHIFGGCEFIRYDDRPWSEKEFNRLQTFTQIVSVVTEQIQSRVVNNVDYELL 180 CL+PLAAEG IFGGCEFIR +DRPWSEKE++RL TFTQIV VV EQIQ+RV NNVDY+LL Sbjct: 121 CLLPLAAEGRIFGGCEFIRQEDRPWSEKEYDRLHTFTQIVGVVAEQIQNRVNNNVDYDLL 180 Query: 181 CRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYST 240 CRERDNFRILVAITNAVLSRLD+DELVSEVAKEIH+YF+ID ISIVLRSHRKNKLNIYST Sbjct: 181 CRERDNFRILVAITNAVLSRLDIDELVSEVAKEIHHYFNIDAISIVLRSHRKNKLNIYST 240 Query: 241 HYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTL 300 HYLD+ HPAHEQSEVDEAGTLTERVFKSKEMLLINL+ERD LAPYERMLFDTWGNQIQTL Sbjct: 241 HYLDEHHPAHEQSEVDEAGTLTERVFKSKEMLLINLNERDPLAPYERMLFDTWGNQIQTL 300 Query: 301 CLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERL 360 CLLPLMSG TMLGVLKLAQCEEKVFTT NL LLRQIAERVAIAVDNALAYQEIHRLKERL Sbjct: 301 CLLPLMSGKTMLGVLKLAQCEEKVFTTANLKLLRQIAERVAIAVDNALAYQEIHRLKERL 360 Query: 361 VDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIAR 420 VDENLALTEQLNNVDSEFGEIIGRSEAMY+VLKQVEMVAQSDSTVLILGETGTGKELIAR Sbjct: 361 VDENLALTEQLNNVDSEFGEIIGRSEAMYNVLKQVEMVAQSDSTVLILGETGTGKELIAR 420 Query: 421 AIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLD 480 AIHNLSGR+ RRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLD Sbjct: 421 AIHNLSGRSGRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLD 480 Query: 481 EVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYY 540 EVGDMPLELQPKLLRVLQEQEFERLGSNK+IQTDVRLIAATNRDLKKMVADREFR+DLYY Sbjct: 481 EVGDMPLELQPKLLRVLQEQEFERLGSNKLIQTDVRLIAATNRDLKKMVADREFRNDLYY 540 Query: 541 RLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRE 600 RLNVFPI LPPLRERPEDIPLL KAFTFKIARR+GRNIDSIPAETLRTLS+MEWPGNVRE Sbjct: 541 RLNVFPIQLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSSMEWPGNVRE 600 Query: 601 LENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVV 660 LENV+ERAVLLTRGNVLQLSLPDI P+T P AT EGEDEYQLI+RVLKETNGVV Sbjct: 601 LENVVERAVLLTRGNVLQLSLPDITAVTPDTSPVATESDKEGEDEYQLIIRVLKETNGVV 660 Query: 661 AGPKGAAQRLGLKRTTLLSRMKRLGIDKSAL 691 AGPKGAAQRLGLKRTTLLSRMKRLGIDK AL Sbjct: 661 AGPKGAAQRLGLKRTTLLSRMKRLGIDKDAL 691 >UniRef50_Q2RXL4 Transcriptional regulator, NifA subfamily, Fis family n=6 Tax=Proteobacteria RepID=Q2RXL4_RHORT Length = 733 Score = 536 bits (1381), Expect = e-150, Method: Compositional matrix adjust. Identities = 319/716 (44%), Positives = 426/716 (59%), Gaps = 48/716 (6%) Query: 14 LFDITRTLLQQPDLASLCEALSQLVKRSALADNAAIVLWQAQTQRASYYASREKDTPIKY 73 L D++ L DL SL AL L L D ++L+ A T + ++ + Sbjct: 14 LLDVSEILELNRDLNSLLGALCDLPASIGLFDYVNLLLYDAPTDTMTLFSQGDVGGGYAR 73 Query: 74 EDETVLAHGPVRSILSRPDTLHCSYEEFCETWPQLDAGGLYPKFGHYCLMPLAAEGHIFG 133 D GP + + +R CS EE+ + ++ A + G YC MPL G Sbjct: 74 IDGLAPTEGPGQVVWARQRPFVCSGEEYRRHFLKIAALRRNQRVGLYCQMPLTTSQRRLG 133 Query: 134 GCEFIRYDDRPWSEKEFNRLQTFTQIVSVVTEQIQSRVVNNVDYELLCRERDNFRILVAI 193 G EFI + E + L+ ++++ E + ++ E L ERD+ ILV + Sbjct: 134 GVEFISSRPTTYDEDDLTFLRRVASVIAISVENALIGEMRQMEEERLRGERDHNHILVEV 193 Query: 194 TNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQHPAHEQS 253 TNAV+S+L +++LV EV++ IH +F +D +S+ L + S ++ P + Sbjct: 194 TNAVISKLKLEDLVDEVSRSIHRFFGVDFVSLDLVDPATATIKSRSVYFQKGLGPVWGSA 253 Query: 254 EVDEAGTLTERVFKSKEMLLINLHERDDLAPYER-----MLFDTWGNQIQTLCLLPLMSG 308 + + +F++K ++ R DL R L G Q+ C +PL+S Sbjct: 254 QGPLGASPMAPLFETKAPRIL---ARADLGALARGHDQMTLLTNAGFQVA--CGIPLLSA 308 Query: 309 DTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALT 368 +LGVL LA E FT N+ LL ++A R+ IAV+NALAY EI RLK++L EN L Sbjct: 309 GHVLGVLTLASRERDKFTDYNIGLLGEVASRICIAVENALAYGEISRLKDQLSRENKQLA 368 Query: 369 EQLNNVDSE------FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAI 422 ++ ++ E FG+IIG S A+ VL+QVE+VA SDSTVLILGETGTGKELIARAI Sbjct: 369 KERYYLEEEIRRTEDFGDIIGISPAIRGVLEQVELVADSDSTVLILGETGTGKELIARAI 428 Query: 423 HNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEV 482 H LS R R M+K+NCAA+P+ LLESDLFGHE+GAFTGA AQ+ GRFELAD+ +LFLDEV Sbjct: 429 HMLSQRKKRTMIKVNCAAIPSALLESDLFGHEKGAFTGAIAQKSGRFELADRGTLFLDEV 488 Query: 483 GDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRL 542 GD+P++LQPKLLR LQE+E ER+G ++ I DVR+IAATNRDL MV R FR DLYYRL Sbjct: 489 GDIPIDLQPKLLRALQEREIERVGGHQPIPVDVRMIAATNRDLTGMVEKRLFRGDLYYRL 548 Query: 543 NVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELE 602 NVFPI +PPLRER EDIPL+A F K AR++ R I++ AET+ L N+ WPGNVREL+ Sbjct: 549 NVFPILIPPLRERREDIPLMADYFMRKTARKMNRAIEAFSAETMDMLLNLPWPGNVRELQ 608 Query: 603 NVIERAVLLTRGNVLQL-------------SLP--DIVL-------------PEPETPPA 634 NVIERAV+LT+G VL L +LP D V+ P+P PPA Sbjct: 609 NVIERAVILTKGPVLHLPATELRHHLAPSAALPSEDAVIPLRAAVLPSAASAPDPLPPPA 668 Query: 635 ATVVA---LEGED-EYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 + L GE E I+RVL+ETNG+V GP+GAA LG+KRTTLLSRM+RLGI Sbjct: 669 GSSPNPGDLAGEAIERDQILRVLRETNGIVGGPRGAAAHLGMKRTTLLSRMRRLGI 724 >UniRef50_P71229 Hydrogenase-4 transcriptional activator n=45 Tax=Enterobacteriaceae RepID=HYFR_ECOLI Length = 670 Score = 520 bits (1338), Expect = e-145, Method: Compositional matrix adjust. Identities = 291/573 (50%), Positives = 388/573 (67%), Gaps = 35/573 (6%) Query: 137 FIRYDDRPWSEKEFNRLQTFTQIVSVVTEQIQSRVVNNVDYELLCRERDNFRILVAITNA 196 FIR ++ ++ +I++ V + + V LL ++RD+ R+LV ITNA Sbjct: 104 FIRTHGSRFTSQDCTLFNWLARIITPVLQSWLNDEEQQVALRLLEKDRDHHRVLVDITNA 163 Query: 197 VLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKN-KLNIYSTHYLDKQHPAHEQSEV 255 VLS LD+D+L+++VA+EIH++F + +S+VL HRKN K +++ + L H A + Sbjct: 164 VLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSD-LSASHCACLPRCM 222 Query: 256 DEAGTLTERVFKSKEMLLINLHERDDLAPYER--MLFDTWGNQIQTLCLLPLMSGDTMLG 313 L + ++++ L H DDL ++R +L N ++ L+PL G+ G Sbjct: 223 PGESVLLTQTLQTRQPTLT--HRADDLFLWQRDPLLLLLASNGCESALLIPLTFGNHTPG 280 Query: 314 VLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQL-N 372 L LA +F+ N LL+ IA+R+AIAV NA A++ + L+E L EN L+EQL + Sbjct: 281 ALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLS 340 Query: 373 NVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRR 432 N+ G+II +S+AM +L+QV++VA+SDSTVLI GETGTGKE+IARAIH LS R ++ Sbjct: 341 NLG--IGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKP 398 Query: 433 MVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPK 492 +VK+NCAA+PA LLES+LFGH++GAFTGA GRFE+AD +LFLDE+GD+PLELQPK Sbjct: 399 LVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPK 458 Query: 493 LLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPL 552 LLRVLQE+E ERLG ++ I +VR+IAATNRDL +MV DR+FRSDL+YRLNVFP+ LPPL Sbjct: 459 LLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPL 518 Query: 553 RERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLT 612 R+RPEDIPLLAK FT K+AR + R ID+IP E LR L + +WPGNVRELENVIERAVLLT Sbjct: 519 RDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLT 578 Query: 613 RGNVLQLSL---PDIVLP----------------EPETPPAATVVALEGEDEYQLIVRVL 653 RGN L L L +LP P TP E+E Q IV+VL Sbjct: 579 RGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPE-------NDEEERQRIVQVL 631 Query: 654 KETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 +ETNG+VAGP+GAA RLG+KRTTLLSRM+RLGI Sbjct: 632 RETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 >UniRef50_Q026M7 Transcriptional regulator, NifA subfamily, Fis Family n=4 Tax=Bacteria RepID=Q026M7_SOLUE Length = 706 Score = 469 bits (1207), Expect = e-130, Method: Compositional matrix adjust. Identities = 270/657 (41%), Positives = 389/657 (59%), Gaps = 55/657 (8%) Query: 50 VLWQAQTQRASYYASREKDTPIKYEDETVLAHGPVRSILSRPDTLHCSYEEFCETWPQLD 109 +LW A + A R D P DET+ + + R + L P LD Sbjct: 72 ILWNACEVCSQQGAVRPPDIP---ADETI-----TKWVYQRQEPL---------VIPALD 114 Query: 110 AGGLYPK---------FGHYCLMPLAAEGHIFGGCEFIRYDDRPWSEKEFNRLQTFTQIV 160 +P+ F C +PL G + ++E L Sbjct: 115 QETRFPRMIEFLRSKGFQSICALPLTTVHRRIGSVAVASKRPDAYCKEEVRFLSLVADQA 174 Query: 161 SVVTEQIQSRVVNNVDYELLCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDI 220 ++ + + + V L R+ D R+L+ + N++ S L++ EL+ ++ I Sbjct: 175 ALAIDDALNFETSQVAQAALQRKNDRLRLLLEVNNSIASNLELRELLRAISASIRPVMQC 234 Query: 221 DDISIVLRSHRKNKLNIYSTHYLDKQH--------PAHEQSEVDEAGTLTERVFKSKE-- 270 D + + L +L +Y+ + + PA+E D G R F++ E Sbjct: 235 DGVGVALPEGENQQLRVYALDFPNGNGRVREDILIPANE----DSPGA---RAFQNGEPA 287 Query: 271 -MLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTN 329 +L ++ D LA E ++ +C +PL+S + +G+L LA+ E F+ + Sbjct: 288 NILSASIDPTDPLATAE---------GLKAVCHIPLISRNRTVGLLSLARLEPVAFSPRD 338 Query: 330 LNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMY 389 + L + +VAIAV+NALAY EI LK+RL E + L +++ + + F EI+GRS+A+ Sbjct: 339 IEFLSLVGNQVAIAVENALAYHEISALKDRLAQEKIYLEDEIRS-ELNFEEIVGRSQALR 397 Query: 390 SVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESD 449 +VL+++E VA +DSTVLI GETGTGKELIARAIHNLS R+ VK+NCAA+P GLLES+ Sbjct: 398 TVLQEIETVAPTDSTVLIYGETGTGKELIARAIHNLSSRSRNSFVKLNCAAIPTGLLESE 457 Query: 450 LFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNK 509 +FGHE+GAFTGA AQRIGRFELA ++FLDE+G++PLELQPKLLRVLQE+EFERLGS++ Sbjct: 458 MFGHEKGAFTGAVAQRIGRFELAHHGTVFLDEIGEIPLELQPKLLRVLQEREFERLGSSR 517 Query: 510 IIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFK 569 ++TD RLIAATNRDL MV DR FR+DL+YRLNVFP+ +P LR+RPEDIPLL + F + Sbjct: 518 TMRTDARLIAATNRDLATMVEDRNFRADLFYRLNVFPVQVPALRDRPEDIPLLVRHFVQQ 577 Query: 570 IARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEP 629 ARR+G+ +D+IP ET+ L WPGN+REL+N++ERAV+L+ G VL++ L D+ L P Sbjct: 578 FARRMGKAVDTIPTETMNVLVRYHWPGNIRELQNLLERAVILSAGPVLKVPLNDLQLQAP 637 Query: 630 ETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 A LE E + I+ L+ + V++GPKGAA+ LGLKR+TL +RM++LGI Sbjct: 638 APTTARKTETLESA-ERRHILEALEAADWVISGPKGAAEALGLKRSTLQARMEKLGI 693 >UniRef50_A0KL56 Formate hydrogenlyase transcriptional activator n=5 Tax=Gammaproteobacteria RepID=A0KL56_AERHH Length = 709 Score = 469 bits (1206), Expect = e-130, Method: Compositional matrix adjust. Identities = 292/722 (40%), Positives = 394/722 (54%), Gaps = 61/722 (8%) Query: 1 MSYTPMSDLG---QQGLFDITRTLLQQPDLASLCEALSQLVKRSALADNAAIVLWQAQTQ 57 +S P++D+ G +++ LL L + L+++ D ++L + Sbjct: 4 VSAIPLTDISPIWDDGFLSLSKNLLSAVTLDDFIKKLNRIQPCFRQVDRVNLILNLGTGE 63 Query: 58 RASYYASREKDTPIKYEDETVLAHGPVRSILSRPDTLHCSYEE--------FCETWPQLD 109 A +Y E+ GP I + D LH S E+ F QL Sbjct: 64 EAVFYYLGEQ--------------GPAHLICRKAD-LHFSREQAIVLPASRFRHRCEQLA 108 Query: 110 AGGLYPKFGHYCLMPLAAEGHIFGGCEFIRYDDRPWSEKEFNRLQTFTQIVSVVTEQIQS 169 + +Y YC +P+ GG EFI + + + +L IV++ E + Sbjct: 109 STPVYDGLHSYCQLPITTARSHLGGVEFISREANAFPMETLAKLTQLAAIVAIALENVLD 168 Query: 170 RVVNNVDYELLCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRS 229 + L ERD+ +ILV +TNAV+ + + EL + +H++F I + + + Sbjct: 169 KERTLEQANSLRLERDSCKILVDVTNAVIKLVRIAELPQSLFTILHHHFGISSLCLAEYN 228 Query: 230 HRKNKLNIYSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERML 289 + Y + ++ P E L + S+ L + R Sbjct: 229 ATSDSFKSYLVNQQQREQPGIINHSCFEKNCLQGALGHSEPFFLYR-EQGHGCQSSCRFT 287 Query: 290 FDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALA 349 + C+LPL +LGVL L+ + F +++LL Q+A R AIA++N A Sbjct: 288 SQILPPDADSSCILPLRYRGNLLGVLILSHPQADFFADLDISLLEQVAARTAIAMNNVQA 347 Query: 350 YQEIHRLKERLVDENLALTEQLNNVDS-----EFGEIIGRSEAMYSVLKQVEMVAQSDST 404 QEI E+ VD +F II +S M VL++V++VAQSD T Sbjct: 348 QQEI--------SNTTGAREKTLRVDGPAPQGDFANIIYQSAVMEKVLEKVKLVAQSDCT 399 Query: 405 VLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQ 464 VLILGETGTGKELIA+AIH LS R++ MVK+NCAA+P GL+ESDLFGHE+GAFTGA Q Sbjct: 400 VLILGETGTGKELIAQAIHALSARHDHEMVKVNCAAIPTGLIESDLFGHEKGAFTGALTQ 459 Query: 465 RIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRD 524 RIGRFE A K +LFLDEVGDMPL+LQPKLLRVLQE E ER+G++ I DVRL+AATN D Sbjct: 460 RIGRFERAHKGTLFLDEVGDMPLDLQPKLLRVLQEHELERVGNSNPIAIDVRLVAATNCD 519 Query: 525 LKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAE 584 L MV ++ FRSDLYYRLNVFPI LPPLRER EDIPLL F KIA+R+ R I SIPA+ Sbjct: 520 LLSMVKNKRFRSDLYYRLNVFPIELPPLRERREDIPLLVNFFIKKIAKRMRRTITSIPAD 579 Query: 585 TLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLP-------------EPE- 630 ++ L ++ W GN+RELEN+IERAV++TRG+VL LS PD +LP EP Sbjct: 580 AMKMLVSLPWYGNIRELENIIERAVVMTRGHVLNLS-PDELLPLKGFHKIETLVYDEPAR 638 Query: 631 ------TPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRL 684 P +GEDE I+R LK NG+VAG +GAAQRLG+KRTTLLS+MKRL Sbjct: 639 ELFREPLPALPQGDEAQGEDERVSIIRALKACNGIVAGERGAAQRLGMKRTTLLSKMKRL 698 Query: 685 GI 686 GI Sbjct: 699 GI 700 >UniRef50_Q1ZUC7 Formate hydrogenlyase transcriptional activator n=4 Tax=Vibrionaceae RepID=Q1ZUC7_PHOAS Length = 717 Score = 466 bits (1198), Expect = e-129, Method: Compositional matrix adjust. Identities = 265/623 (42%), Positives = 378/623 (60%), Gaps = 57/623 (9%) Query: 99 EEFCETWPQLDAGGLYPKFGHYCLMPLAAEGHIFGGCEFIRYD--DRPWSEKEFNRLQTF 156 E +T+PQL+ Y +YC +PL+ G E+I D SEK+F + F Sbjct: 110 ETLYQTFPQLENHPAYDSVFNYCKIPLSICNQPLGAIEYINLTMPDDSESEKQF---KLF 166 Query: 157 TQIVSVVTEQIQSRVVNNVDYELLCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHY 216 ++S + E I + E L E++NF++LV +TN V+S+ EL+ + + ++ Sbjct: 167 NNMISAMIEHIIEHQTASTFTEKLTTEKNNFQVLVDVTNTVISQSTKKELIGSLLRFLYQ 226 Query: 217 YFDIDDISIVLRSHRKNKLNIYSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINL 276 +FD+ D+SI+ + N +S +++ + Q L + K+ + + +N Sbjct: 227 HFDMTDLSII--QLQDGHYNQHSACFINNE--IDYQCHFFTNDKLIKNAIKNNKPVFLNA 282 Query: 277 -----HERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLN 331 + D+ +PY + ++++T C++PL+ +G + + E + T+L Sbjct: 283 IDIKKMQADNNSPY-------FPSRVKTACVMPLVFRGIAVGYISFMKPIEAPYQNTDLE 335 Query: 332 LLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGE------IIGRS 385 L +QIA RVA+A +H +K + N+D GE II +S Sbjct: 336 LFKQIAARVALA---------MHSIKTHQASTPNQPITKFVNIDEGMGEHVIFDDIISQS 386 Query: 386 EAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGL 445 E M VL+QV +VA DSTVLILGE+GTGKELIARAIH LS R+ MVKMNCAA+PAGL Sbjct: 387 EVMNKVLEQVALVASCDSTVLILGESGTGKELIARAIHKLSLRSKTDMVKMNCAAIPAGL 446 Query: 446 LESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERL 505 ES+LFGHERGAFTGA +QR+GRFE A K +LFLDE+GDMPLELQPKLLR LQE E ER+ Sbjct: 447 FESELFGHERGAFTGAISQRVGRFEQAHKGTLFLDEIGDMPLELQPKLLRALQENEIERV 506 Query: 506 GSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKA 565 G N +I DVR++ ATN DL + V +++FR+DLYYRLNVFPI +PPLRER EDIPLL K Sbjct: 507 GKNALISVDVRIVVATNVDLLRRVEEKKFRNDLYYRLNVFPIQIPPLRERAEDIPLLVKH 566 Query: 566 FTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDI- 624 FT ++A+++G+ I +I AE L +S WPGNVREL N +ER+V+LTRGNVL + + ++ Sbjct: 567 FTRELAKKMGKTITAIAAEDLAVMSVFPWPGNVRELRNFVERSVILTRGNVLNVPVHELK 626 Query: 625 ------VLPEPETPP----AATVV-----ALEGEDEYQLI-----VRVLKETNGVVAGPK 664 +P + PP AA V+ A++G+ +I ++ LK +GVVAGP Sbjct: 627 AVSHSACVPTEKVPPVNPEAAGVINTPEPAVKGDVVKPIIDKADVIKALKACHGVVAGPN 686 Query: 665 GAAQRLGLKRTTLLSRMKRLGID 687 GAA +LGLKRTTLLSRM+++GI+ Sbjct: 687 GAANQLGLKRTTLLSRMQKMGIN 709 >UniRef50_Q1ZGP7 Formate hydrogen-lyase transcriptional activator n=1 Tax=Psychromonas sp. CNPT3 RepID=Q1ZGP7_9GAMM Length = 766 Score = 442 bits (1136), Expect = e-122, Method: Compositional matrix adjust. Identities = 248/547 (45%), Positives = 343/547 (62%), Gaps = 56/547 (10%) Query: 188 RILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLR--------SHRKNKLNIYS 239 +LV +T AV+ +++ + L + + + +F I+ ISI+ H N+ Sbjct: 234 HVLVEVTEAVIGQVNFEGLATVLFLHLQEHFGIEFISIMSFSSDSESLSCHEVNQGKEGK 293 Query: 240 THYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDD--LAPYERMLFDT--WGN 295 Y++ Q P +A T+ E V +SK+ L ++ R D L ++ + D + Sbjct: 294 AQYIESQKP--------KAKTMEEHVIQSKKTLQLS---RSDYPLLKHKFLHVDDHYMSH 342 Query: 296 QIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHR 355 ++ + C+ PL+ +LGV+K EK F+ L+LL+QIA R+++A++ +Q + Sbjct: 343 KLSSECVFPLLFRQQVLGVIKYGHRAEKYFSEERLDLLKQIAARISVAIN---YFQNSSK 399 Query: 356 LKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGK 415 + ++L ++ + FG II +S+AM V ++V MVA DSTVLILGETGTGK Sbjct: 400 FMMKSTPKDLMSVDKTEQSKAMFGGIISQSKAMREVFQRVLMVADCDSTVLILGETGTGK 459 Query: 416 ELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKS 475 E+IA IHN S R++++MVKMNC+A+P+GL ESDLFGH +GAFTGA Q++GRFE A KS Sbjct: 460 EMIANMIHNASNRSHKKMVKMNCSAVPSGLFESDLFGHVKGAFTGAVNQQVGRFEEAHKS 519 Query: 476 SLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFR 535 S FLDE+GDMPL+LQPK+LR LQE E ER+G + II DVR+IAAT+ DL MV D FR Sbjct: 520 SFFLDEIGDMPLQLQPKVLRALQEGEIERVGKHTIIPVDVRMIAATHCDLLSMVKDNSFR 579 Query: 536 SDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWP 595 DLYYRLNVFPI +PPLRER EDIPLLAK FT ++++ R+I SI ETLR L ++ WP Sbjct: 580 RDLYYRLNVFPIRIPPLRERREDIPLLAKHFTQLFSKKMNRDIQSISPETLRILYSLPWP 639 Query: 596 GNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVA---------------L 640 GNVREL+NVIERAV++ +G VL L + ++ P+ P+ V L Sbjct: 640 GNVRELKNVIERAVIMNKGQVLHLPMSELKEYFPDIDPSPLCVQDGTKKEAGCFPDTVDL 699 Query: 641 EGED---------------EYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLG 685 GE+ E + I++VLKETNG+VAGPKGAA RLGLKRTTLLSRM+RLG Sbjct: 700 YGENTIPKNVSAVKSVKSMEREQIIKVLKETNGIVAGPKGAAHRLGLKRTTLLSRMQRLG 759 Query: 686 IDKSALI 692 I + LI Sbjct: 760 ITSNDLI 766 >UniRef50_D0Z425 Formate hydrogenlyase transcriptional activator n=1 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0Z425_LISDA Length = 739 Score = 437 bits (1125), Expect = e-121, Method: Compositional matrix adjust. Identities = 254/648 (39%), Positives = 372/648 (57%), Gaps = 80/648 (12%) Query: 97 SYEEFCETWPQLDAGGLYPKFGHYCLMPLAAEGHIFGGCEFIRYD--DRPWSEKEFNRLQ 154 S E +T+PQL Y YC +PL G G E+I + D SE++F + Sbjct: 108 SGHELYQTFPQLVDHPAYYDVNRYCKIPLLIAGKPLGAIEYINHKLADSIESERQF---K 164 Query: 155 TFTQIVSVVTEQIQSRVVNNVDYELLCRERDNFRILVAITNAVLSRLDMDELVSEVAKEI 214 F +++ + E I + + + L E+ NF++LV ITN V+S+ EL+S + + Sbjct: 165 LFNNMIAAMIEHIIEHQLASDFTQQLSNEKKNFQVLVDITNTVISQSTKKELISSLLHFL 224 Query: 215 HYYFDIDDISIVLRSHRKNKLNIYSTHY------LDKQHPAHEQSEVDEAGTLTERVFKS 268 + +F + ++SI+ + HY L+ + ++ + + + Sbjct: 225 YQHFAMTELSII---------QLQDNHYMQMFCGLNNNNTEFHCHFFNDDKMIKHAIENN 275 Query: 269 KEMLL----INLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKV 324 K +LL + +D+ PY + +++++ C++P++ +G + + E Sbjct: 276 KPVLLDHNQLEQIRQDENGPY-------FPSKVKSACIVPMVFRGLTIGYICYMKRETLN 328 Query: 325 FTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGR 384 + ++ L++QIA RVA+A+ + A+Q R E E+ + + F +II + Sbjct: 329 YQQYDIELVQQIASRVALAMHSIKAHQAT---LPRTETEQYVSIEESYDEHAIFDDIISQ 385 Query: 385 SEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 444 SEAM VL++V MVA DSTVLILGE+GTGKELIARAIH +S R+ RMVKMNCAA+PAG Sbjct: 386 SEAMNQVLEKVAMVASCDSTVLILGESGTGKELIARAIHKMSLRSKTRMVKMNCAAIPAG 445 Query: 445 LLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFER 504 L ES+LFGHERGAFTGA +QR+GRFE A K +LFLDE+GDMPLELQPKLLR LQE E ER Sbjct: 446 LFESELFGHERGAFTGAISQRVGRFEQAHKGTLFLDEIGDMPLELQPKLLRALQENEIER 505 Query: 505 LGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAK 564 +G N++I DVR++ ATN DL MV ++FR+DLYYRLNVFPI +PPLR+R EDIPLL K Sbjct: 506 VGKNQLISVDVRIVVATNVDLLAMVDAKQFRNDLYYRLNVFPIEVPPLRQRAEDIPLLVK 565 Query: 565 AFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDI 624 F ++A+++G+ I +I A L + WPGNVREL N +ER+V+LTRG+VL + + ++ Sbjct: 566 HFARQLAQKMGKKITAIAASDLELMQRFSWPGNVRELHNFVERSVILTRGHVLNIPVDEL 625 Query: 625 VLPEP------------------------ETPPAATV-------------VALEGEDEYQ 647 + +P E P A++ V ++E + Sbjct: 626 ISLQPHIVQNSRKMESQASLSKTSLKQAQELPQVASIDDLTSSGSESVCSVDTAAKNEVK 685 Query: 648 ---------LIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 +I+ LK GV+AGP GAA LGLKRTTLLSRM+++GI Sbjct: 686 KVRPIVDQSMIINALKRCQGVIAGPNGAANMLGLKRTTLLSRMQKMGI 733 >UniRef50_A7HFP7 Transcriptional regulator, NifA subfamily, Fis Family n=2 Tax=Myxococcaceae RepID=A7HFP7_ANADF Length = 674 Score = 412 bits (1059), Expect = e-113, Method: Compositional matrix adjust. Identities = 239/518 (46%), Positives = 329/518 (63%), Gaps = 15/518 (2%) Query: 183 ERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHY 242 ER+ R+L+ + +++ LD+ E+ +A + D I + L +L + + Sbjct: 158 ERNRLRLLLDVNELLVAHLDLREMFQALASSLRRVTDCHFIGLALPDAATGELRQHIVDH 217 Query: 243 LDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHE--RDDLAPY-----ERMLFDTWGN 295 D + E + G+ + + F++ +L+N E R D Y R Sbjct: 218 PDGKGAITEGMVLPLHGSASGKAFRTGAPVLLNDPEANRQDPDLYGTPEGARFYRTVLEE 277 Query: 296 QIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHR 355 + + +LPL+ +LGVL+L + + F + + ++A +++IAV NAL Y+E+ Sbjct: 278 GVPSGYVLPLVHRGEVLGVLQLKKYADARFKEREIEFMSKVAGQLSIAVANALEYREVKE 337 Query: 356 LKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGK 415 KERL E + L E++ + +F EIIG S + VL Q++ VA +DSTVLILGETGTGK Sbjct: 338 SKERLDRERVYLKEEIRSA-HDFEEIIGVSRTLKQVLGQIDTVAVTDSTVLILGETGTGK 396 Query: 416 ELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKS 475 ELIARAIHN S R +R VK+NC+A+P GLLES+LFGHERGAFTGA+A RIGRFE AD+ Sbjct: 397 ELIARAIHNRSRRRDRPFVKVNCSAIPTGLLESELFGHERGAFTGATAPRIGRFEAADQG 456 Query: 476 SLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFR 535 +LFLDE+GD+P++LQPKLLRVLQE+EFERLG+++ + DVR++AATNR L MV + FR Sbjct: 457 TLFLDEIGDLPVDLQPKLLRVLQEREFERLGASRTRRVDVRVVAATNRGLATMVGEGRFR 516 Query: 536 SDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWP 595 DLYYRLNVFPI LPPLRER DIPLL + F ARR+G+ ID IP ++R L WP Sbjct: 517 EDLYYRLNVFPITLPPLRERAGDIPLLVRHFVGVYARRMGKQIDHIPDASMRALVGYHWP 576 Query: 596 GNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEG-----EDEYQLIV 650 GNVREL+NVIERAV+LT G VL+L+L + E P A A G E E + I+ Sbjct: 577 GNVRELQNVIERAVILTPGAVLELALAERAAGAREDRPDAA--APNGHRTLQEVEREHIL 634 Query: 651 RVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDK 688 L+E V+ GP GAA RLGL+RT+L+ RM++LGI + Sbjct: 635 GALQEAKWVIGGPNGAAARLGLRRTSLMYRMEKLGIAR 672 >UniRef50_UPI00016C3921 transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C3921 Length = 527 Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust. Identities = 222/458 (48%), Positives = 294/458 (64%), Gaps = 23/458 (5%) Query: 249 AHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSG 308 A +E+ + T V+ ++E L +++ D P R F G ++ C +PL + Sbjct: 64 ADTPTELPAGESPTAHVWDTQEPLWLDVTA-DGRFPVLRTAFAKQG--VRCACFVPLTTP 120 Query: 309 DTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALT 368 LG + ++N Q+ VA+AV+ AL QE+ R RL E L L Sbjct: 121 RRKLGAMAFTSYLPVSPAPDDINFTLQVGRLVALAVEGALTRQELERANARLAAEKLYLE 180 Query: 369 EQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGR 428 E++ D E++G S + VLKQVE+VA +DS VL+ GETGTGKEL+ARA+H LS R Sbjct: 181 EEIR-ADRRMHEVVGDSRTLQEVLKQVEVVAPTDSAVLVTGETGTGKELVARAVHRLSAR 239 Query: 429 NNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLE 488 + R VK+NCAA+P GLLES+LFGHE+GAFTGA +R+GRFELAD +LFLDEVGD+P E Sbjct: 240 SERTFVKLNCAAIPTGLLESELFGHEKGAFTGAVERRLGRFELADGGTLFLDEVGDIPQE 299 Query: 489 LQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIH 548 LQPKLLRVLQEQEFERLGS K ++ +VRL+AAT+R+L K+VA+ +FRSDLYYRL+VFP+H Sbjct: 300 LQPKLLRVLQEQEFERLGSAKTVKVNVRLVAATHRNLAKLVAEGKFRSDLYYRLHVFPVH 359 Query: 549 LPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERA 608 LP LR+R EDIP L + F A+R G+ I++IPAE + L WPGNVREL+++IERA Sbjct: 360 LPALRDRREDIPSLVRHFVALFAQRFGKRIETIPAEAMAALERYAWPGNVRELQHLIERA 419 Query: 609 VLLTRGNVLQLSLPDIVLPEPETPPAA--TVVALE----------------GEDEYQLIV 650 V+LT G+ L++ L ++ P PP+ VAL E E LI Sbjct: 420 VILTTGSELRVPLGELT-PTTAEPPSHPRPAVALTIPPTSPAEPPPQFNALRESERDLIR 478 Query: 651 RVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDK 688 R L V+ GP GAA +LGLKRTTLLSRMK+LG+ + Sbjct: 479 RALDRCGWVIGGPNGAAAQLGLKRTTLLSRMKKLGLTR 516 >UniRef50_C3X424 Transcriptional regulator containing GAF n=2 Tax=Oxalobacter formigenes RepID=C3X424_OXAFO Length = 540 Score = 402 bits (1034), Expect = e-110, Method: Compositional matrix adjust. Identities = 229/516 (44%), Positives = 317/516 (61%), Gaps = 14/516 (2%) Query: 183 ERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHY 242 + D F LV +T+AV++ D+ L + A +H +F +D IS+ +LN+ + + Sbjct: 19 DHDFFHFLVDLTDAVIAATDIPCLAEKTADYLHEFFGLDYISLETYEPASFRLNVQAIRF 78 Query: 243 LDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCL 302 + + TL + +E +L N + A + G+ +Q L Sbjct: 79 EQGKRRLYNSFSKPLHATLLGAALRKQEKILFNRNAILSNAAKYPYVARLAGDGLQVLLY 138 Query: 303 LPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVD 362 LPL+S +LG L + + FT + LL +I+ R+A+A+D L++++ + Sbjct: 139 LPLVSAGNLLGTLGVGSFKPCHFTPETMALLNRISARLAVALDVMLSHRKKTAPASVSPN 198 Query: 363 ENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAI 422 E+ + + +IG S A+ S+L+Q+E+VA S++TVL+ GETGTGK LIA+ I Sbjct: 199 ESPITGDNIEETPPPH-HLIGHSVAIQSILQQIEIVASSNATVLLQGETGTGKGLIAQTI 257 Query: 423 HNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEV 482 HNLS R R MVKMNC A+P+ L+ES+LFGHE+GAFTGA +RIG FE ADKS+LFLDE+ Sbjct: 258 HNLSDRKARDMVKMNCTAIPSELMESELFGHEKGAFTGALNKRIGHFEQADKSTLFLDEI 317 Query: 483 GDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRL 542 GDMPL+LQPKLL VLQE + RLGS I DVR IAATN DL + D+ FRSDL+YRL Sbjct: 318 GDMPLDLQPKLLSVLQEHQIRRLGSPHTISVDVRCIAATNCDLVAKIEDKTFRSDLFYRL 377 Query: 543 NVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELE 602 NVFPI +PPLRER EDIP LA+ F K AR + R+I IP+ETL ++ + WPGN+RELE Sbjct: 378 NVFPITVPPLRERAEDIPSLARFFIRKYAREMNRHITGIPSETLALMTRLPWPGNIRELE 437 Query: 603 NVIERAVLLT-RGNVLQLSLPDIVLP----------EPETPPAATVVALEGEDEYQLIVR 651 NV+ERAV+LT +G VL LS P+ +L + P V A+ E + +V Sbjct: 438 NVMERAVILTSQGGVLNLS-PESLLSYTTQNSPLTVHASSQPVVPVPAIP-ETDKDTLVN 495 Query: 652 VLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 L+ET G + G GAA RLGLKRTTLL+R+KR GI+ Sbjct: 496 ALRETGGQIGGKTGAAARLGLKRTTLLARLKRFGIN 531 >UniRef50_C1F0X6 Sigma-54 dependent transcriptional regulator, Fis family n=3 Tax=Bacteria RepID=C1F0X6_ACIC5 Length = 781 Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust. Identities = 239/552 (43%), Positives = 332/552 (60%), Gaps = 10/552 (1%) Query: 139 RYDDRPWS-EKEFNRLQTFTQIVSVVTEQIQSRVVNNVDYELLCRERDNFRILVAITNAV 197 RY+D W K+ +R I ++ +Q Q + + +L R R +L ++ +V Sbjct: 234 RYEDEGWRIRKDGSRFWANVLITALYDQQRQIIGYSKLTRDLTERRRAEEALLAELSVSV 293 Query: 198 LSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQHPAHEQSEVDE 257 L L + +++ VA + D SI L KN L+ Y P E S E Sbjct: 294 LPGLKIQQMLHAVASSMQRIVAHDYASITLLDQSKNVLHSYILSAAGDSGPEMELSVAPE 353 Query: 258 AGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKL 317 + + + + L +L +D P + L + I LPL+ + G L + Sbjct: 354 SSPEAAVLHTHEALFLPSL--QDSSFPQD-ALRHALSSGIHAAWWLPLVHEGRVAGALCI 410 Query: 318 AQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSE 377 K + + L Q+A ++A+ + A +++ ++L +E L E+L + Sbjct: 411 GVRNPKTLEHVSRHTLTQMAAQIALTIQGINAARQLSAQTQKLKEEKRYLEEELRT-EYS 469 Query: 378 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMN 437 F EI+G E++ VLKQVE VA +D+T LILGETGTGKELIARAIHNLS R+ VK+N Sbjct: 470 FEEIVGNGESLRRVLKQVETVAPTDATTLILGETGTGKELIARAIHNLSARDGHTFVKVN 529 Query: 438 CAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVL 497 C+++P GLLES+LFGHE+GAFTGA QRIGR ELA + +LFLDE+GD+PL+LQPKLLR L Sbjct: 530 CSSIPTGLLESELFGHEKGAFTGAIQQRIGRLELAHQGTLFLDEIGDLPLDLQPKLLRAL 589 Query: 498 QEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPE 557 QE+E ERLG + I D RL+AAT+RDL +MV D +FRSDLYYRL VFPI LPPLR+R E Sbjct: 590 QEKEIERLGGRRTIPVDFRLLAATHRDLARMVKDGQFRSDLYYRLKVFPILLPPLRQRRE 649 Query: 558 DIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVL 617 DIP L F K ARR+ ++I+ IP + L WPGN+RELEN +ERAV+LTRG +L Sbjct: 650 DIPELVNYFVAKHARRMNKHIEEIPEPVMSALVRWHWPGNIRELENFLERAVILTRGPLL 709 Query: 618 QLSLPDIVLPEPET-PPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTT 676 + L ++ ET P +T+ A E I++VL++ +GV+AG GAA+RLGLKRTT Sbjct: 710 RAPLSELQELNIETDEPQSTLEAAERAH----ILQVLRDCDGVIAGAGGAAERLGLKRTT 765 Query: 677 LLSRMKRLGIDK 688 L SRMK+LGI++ Sbjct: 766 LNSRMKKLGIER 777 >UniRef50_Q022Z3 Transcriptional regulator, Fis family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q022Z3_SOLUE Length = 705 Score = 366 bits (939), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 229/541 (42%), Positives = 312/541 (57%), Gaps = 44/541 (8%) Query: 161 SVVTEQIQSRVV-NNVDYELLCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFD 219 S VTE++ V + E C +D R + L D D + A+ + + + Sbjct: 193 SYVTEELDRSVAEGHFGSEGWCMRQDGERFWGNVVTVSLK--DEDGKLQGFARVVRDFSE 250 Query: 220 IDDISIVLRSHRKNKLNIYSTHYLDKQHPAHEQSEVDEAG-TLTERVFKSKEMLLINLHE 278 + LR R ++L ST L + E + EA E V ++E LL Sbjct: 251 RRERDEKLRGKR-SRLRTTSTDTLIAGIVSGEFDRIPEANDAFLELVGYTREDLLTGCLR 309 Query: 279 RDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAE 338 DL P E D ++ L+ C L+R+ Sbjct: 310 WPDLTPPEYFALDELAHEEG----------------LRFGAC-----APYEKELIRKGGS 348 Query: 339 RVAIAVDNALA----------YQEIHRLKERL-VDENLALTEQLNNVDSEFGEIIGRSEA 387 RV + V A+ QE+ RL V E TE++ + +EF EI+GRS A Sbjct: 349 RVQVLVATAVLKLAPFRWISFVQELSAFDRRLPVAETGEFTEEIVVLKNEFVEIVGRSAA 408 Query: 388 MYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLE 447 M VL Q+E+VA +++TVLILGETGTGKEL+ARA+H +S R +R V +NCAA+P GLLE Sbjct: 409 MNRVLGQIELVAPTNATVLILGETGTGKELVARAVHQMSPRRDRPFVTLNCAAIPTGLLE 468 Query: 448 SDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGS 507 S+LFG+ERGAFTGA +Q+IGRFE+A++ +LFLDEVGD+PL+LQPKLLR LQE+ FERLG Sbjct: 469 SELFGYERGAFTGALSQKIGRFEMANRGTLFLDEVGDIPLDLQPKLLRALQEKSFERLGG 528 Query: 508 NKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFT 567 K I DVRL+AATNR+L +M+ D+ FRSDLYYRL VFPI PLR+ PEDIP+LA+ F Sbjct: 529 TKTIPIDVRLVAATNRNLTQMMGDKLFRSDLYYRLKVFPITTSPLRDHPEDIPILARHFM 588 Query: 568 FKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLP 627 K AR +G+ ID+IP + L+ L WPGNVRELEN IERAV+LT+G+ L+ L +I Sbjct: 589 QKYAREMGKQIDTIPPDALQALVKWPWPGNVRELENFIERAVILTQGSSLRAPLAEIRPD 648 Query: 628 EPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 E P +T+ + E ++++L ET V++ AA RLG+ RTTL + M +LGI Sbjct: 649 AAELPGDSTLEFV----ERAHLLKILGETGWVIS---KAAARLGMPRTTLNAMMGKLGIS 701 Query: 688 K 688 + Sbjct: 702 R 702 >UniRef50_Q39TT6 Transcriptional regulator, Fis family / DNA-binding protein Fis n=1 Tax=Geobacter metallireducens GS-15 RepID=Q39TT6_GEOMG Length = 473 Score = 361 bits (926), Expect = 6e-98, Method: Compositional matrix adjust. Identities = 186/344 (54%), Positives = 248/344 (72%), Gaps = 7/344 (2%) Query: 349 AYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLIL 408 A E+ LK RL EN+ L ++ + + F EI+ + L+ VE VA +D++VLIL Sbjct: 134 ALDEVQTLKNRLEAENVYLMNEIK-LSNNFDEIVTGNPIFMKALQLVEQVAPTDASVLIL 192 Query: 409 GETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGR 468 GETG GKELIARAIHNLS R +R ++++NCAA+PA L+E++LFGHERGAFTGA+ ++ GR Sbjct: 193 GETGVGKELIARAIHNLSNRRDRPLIRLNCAALPATLMENELFGHERGAFTGANCRKPGR 252 Query: 469 FELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKM 528 F+LAD +LFLDEVGD+P+ELQ KLLRVLQE EFERLG + I+ DVR++AAT+ DLK + Sbjct: 253 FDLADGGTLFLDEVGDLPMELQSKLLRVLQEGEFERLGGAETIKVDVRILAATHVDLKAL 312 Query: 529 VADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRT 588 +A+ FRSDLYYRLNVFPI PPLRER EDIPLL + F + G++I+ IP + + Sbjct: 313 LAEGRFRSDLYYRLNVFPIQCPPLRERREDIPLLVRHFVKASCEKNGKSIELIPRHVMES 372 Query: 589 LSNMEWPGNVRELENVIERAVLLTRGNVLQL-SLPDIVLPEPETPPAATVVALEGEDEYQ 647 L WPGN+REL+NVIERAV+++RGN L++ SLP +V+ P + V E + Sbjct: 373 LEGYPWPGNIRELQNVIERAVIISRGNKLEIDSLPKMVIAADAAPISPLEVT-----ERE 427 Query: 648 LIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSAL 691 I+R L+ T V GPKGAA+ LGLKRTTL +RM++LGI++ L Sbjct: 428 HIIRALETTAWRVGGPKGAAEILGLKRTTLQARMRKLGINRQGL 471 >UniRef50_C7PQF6 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PQF6_CHIPD Length = 1082 Score = 356 bits (914), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 194/400 (48%), Positives = 270/400 (67%), Gaps = 9/400 (2%) Query: 297 IQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALA------- 349 I+ + + L++ + +G + + E F +L+LL+ I+++VA+AV N LA Sbjct: 675 IKEIAGVKLVNQNEDIGFITMLSEERNSFRHRDLHLLKGISDQVAVAVANILADEKIGQQ 734 Query: 350 YQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILG 409 +EI+ KE+L +E L L +++++V + +IIG M V + V+ + STVLILG Sbjct: 735 LKEINGYKEKLEEEKLYLQQEISSVYTH-TDIIGAGPEMQRVFHMLSQVSFAQSTVLILG 793 Query: 410 ETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRF 469 ETGTGKELIARAIHN S R N+ MVK+NCAA+PA L+ES+LFGHERG+FTGA +RIG+F Sbjct: 794 ETGTGKELIARAIHNGSPRKNKLMVKVNCAALPANLIESELFGHERGSFTGAIERRIGKF 853 Query: 470 ELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMV 529 ELA+ +LFLDE+G+MPL+LQ KLLR +QE+E ER+G I+TDVR+IAATNR+L+K V Sbjct: 854 ELANHGTLFLDEIGEMPLDLQVKLLRAIQEREIERIGGKSTIKTDVRIIAATNRNLQKEV 913 Query: 530 ADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTL 589 A+ FRSDLYYRLNVFPI LPPLR+R EDI LLA F + AR GR + + ++ L Sbjct: 914 AEGRFRSDLYYRLNVFPIVLPPLRDRKEDISLLAAHFIERFARSTGRKNIKLSSTAMKQL 973 Query: 590 SNMEWPGNVRELENVIERAVLLTRGNVL-QLSLPDIVLPEPETPPAATVVALEGEDEYQL 648 + WPGNVRELE+V+ER++LLT+GN++ ++ L E + E E Sbjct: 974 TAYNWPGNVRELEHVLERSILLTQGNIIREIHLSSQPKSEAKVRQEEDFSRTLDEMERDY 1033 Query: 649 IVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDK 688 I+ VL + G + GP GAA+ LGL +TL R+++LGI K Sbjct: 1034 ILGVLNKCKGKIFGPGGAAEILGLHVSTLNHRIRKLGIQK 1073 >UniRef50_D2QGL7 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Flexibacteraceae RepID=D2QGL7_9SPHI Length = 488 Score = 356 bits (914), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 191/374 (51%), Positives = 265/374 (70%), Gaps = 6/374 (1%) Query: 315 LKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNAL--AYQEIHRLKERLVDENLALTEQLN 372 +L + ++ T +L L+Q E++ AL A E+ RLK++L EN L E++ Sbjct: 115 FQLQEVLSRIHTHLSLRRLQQSMEQLVAERTQALTKALAEVERLKDQLQAENTYLREEIK 174 Query: 373 NVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRR 432 + F EI+ +S+A VL+ VE VA +++TVLILGE+GTGKEL+ARA+HNLS R N+ Sbjct: 175 QTKN-FDEIVTQSKAFQKVLRSVEQVAPTNTTVLILGESGTGKELLARAVHNLSSRKNKP 233 Query: 433 MVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPK 492 +VK+NCAA+PA L+ES+LFGHE+GAFTGA+AQ++GRFELAD ++FLDE+G+MPL+LQ K Sbjct: 234 LVKINCAALPATLIESELFGHEKGAFTGATAQKVGRFELADGGTIFLDEIGEMPLDLQAK 293 Query: 493 LLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPL 552 LLRVLQE EFER+GS K ++ +VR+IAATNRDL+ A+ FR DLYYRL+VFPI PL Sbjct: 294 LLRVLQEGEFERVGSTKTMKVNVRVIAATNRDLEIESAEGRFREDLYYRLSVFPIVSLPL 353 Query: 553 RERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLT 612 R R EDIPLL + F K +G+ ID+IPA L TL++ WPGN+RELEN+++RA++++ Sbjct: 354 RTRKEDIPLLVRHFCAKHGADMGKTIDTIPATVLDTLTDYHWPGNIRELENLVQRALIMS 413 Query: 613 RGNVLQLSLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGL 672 G L + D + +P AT++ +E E E I+ VL+ T+ V+G GAA+ L + Sbjct: 414 PGRTLVIG--DWLRKKPLANQKATLMTME-EAERAHIISVLELTHWKVSGDNGAARLLDM 470 Query: 673 KRTTLLSRMKRLGI 686 TTL SRMK+LGI Sbjct: 471 IPTTLDSRMKKLGI 484 >UniRef50_A6EHC4 Sigma-54-dependent transcriptional regulator n=1 Tax=Pedobacter sp. BAL39 RepID=A6EHC4_9SPHI Length = 550 Score = 353 bits (907), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 207/547 (37%), Positives = 327/547 (59%), Gaps = 23/547 (4%) Query: 163 VTEQIQSRVVNNVDYELLCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDD 222 ++ Q Q+R++ ++ ++ +E+++ +L++++NA+ + + +L + +++ FD D+ Sbjct: 10 LSAQDQNRMLLEINERIIRKEQES-AVLLSLSNAIATIRNKYDLFEVIDQKLKTLFDFDE 68 Query: 223 ISIVLRSHRKNKLNIYSTHYLDKQHPAHEQSEVDEAGT--------LTERVFKSKEMLLI 274 I L + K +S +++ + + A T L E + S ++ Sbjct: 69 FVICLINEDKK---THSPFLYNQREDFRNAAGIPPASTKRYSLDDGLCEAMLASAHPIVF 125 Query: 275 NLHERDDLAPYERMLFDTWGNQ-IQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLL 333 + E P + W N+ I+ + + + D G L + + +LL Sbjct: 126 EVEEVMQW-PDPPIWLGFWQNKGIREMIGMKIFDRDECSGFFYLYAKKSNAVSNQYYSLL 184 Query: 334 RQIAERVAIAVDNALA-------YQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSE 386 I+ ++++AV N A Q+I+ K++L DE L EQ+N E++G+S Sbjct: 185 HSISLQISVAVSNIRANEKIEEQLQQINTYKQQLEDEKSYLQEQIN-TRYHHSEMVGQSS 243 Query: 387 AMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLL 446 A+ V +E VA SDSTVLILGETGTGKEL+AR+IHNLS R ++ M+K+NCAA+PA L+ Sbjct: 244 AIRQVFDLIEQVAASDSTVLILGETGTGKELVARSIHNLSPRKDKLMIKVNCAALPANLV 303 Query: 447 ESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLG 506 ES+LFGHE+G+FTGAS +RIG+FELA +LFLDE+G++ ++Q KLLR LQE+E ER+G Sbjct: 304 ESELFGHEKGSFTGASERRIGKFELAHNGTLFLDEIGELSPDIQVKLLRALQEKEIERIG 363 Query: 507 SNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAF 566 +I+T+VR+IAATNR+L K V + FRSDLYYRLNVFPI +PPLR R EDI L+ F Sbjct: 364 GKGVIKTNVRIIAATNRNLMKEVEEGNFRSDLYYRLNVFPITIPPLRNRKEDIQALSAHF 423 Query: 567 TFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVL-QLSLPDIV 625 +A++ GR + + L+TL WPGN+RELE++IER++LL+RGN++ ++ LP + Sbjct: 424 IQHLAKKTGRQVKGMTKGVLKTLQEYPWPGNIRELEHLIERSILLSRGNIINEVHLPKVE 483 Query: 626 LPEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLG 685 E T + E+E I+ +LK G ++G GAA+ L + TTL S++K+ Sbjct: 484 HMEDLTSNKEIRIKTIFENERDHILNILKLCKGKISGNGGAAELLSIPATTLNSKIKKFN 543 Query: 686 IDKSALI 692 I K +I Sbjct: 544 IKKEHVI 550 >UniRef50_Q39TH4 Transcriptional regulator, NifA subfamily, Fis family n=1 Tax=Geobacter metallireducens GS-15 RepID=Q39TH4_GEOMG Length = 556 Score = 353 bits (905), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 196/405 (48%), Positives = 271/405 (66%), Gaps = 23/405 (5%) Query: 296 QIQTLCLLPLMSGDTMLGVLKLAQCEE-KVFTTTNLNLLRQIAERVAIAVDNAL------ 348 +I++ +P+ G + G L LA + + + LR + E A NAL Sbjct: 152 RIKSQVSVPISVGGHVFGTLSLATVRSYRSWPDELVPRLRLVGEIFA----NALVRKQKE 207 Query: 349 -----AYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDS 403 A+Q+I L E L + L E+++ ++ + IIG+S + VL +++ +A +D+ Sbjct: 208 LQIRKAFQQIKELNEELAADCTYLREEID-LNYDVHHIIGQSLPLKRVLAKIQQIALTDT 266 Query: 404 TVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASA 463 TVLILGETGTGKEL+ARAIH S R +R MVK+NCA++PA L+ES+LFGHE+GAFT A Sbjct: 267 TVLILGETGTGKELVARAIHAASQRRDRPMVKVNCASLPANLIESELFGHEKGAFTSAQV 326 Query: 464 QRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNR 523 ++IGRFE AD+++LFLDE+G++PLE Q KLLRVLQE EFERLGS++ ++ DVR++AATNR Sbjct: 327 RQIGRFEFADRNTLFLDEIGELPLESQAKLLRVLQEGEFERLGSSRTLKVDVRIVAATNR 386 Query: 524 DLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPA 583 DL++ V FR DL+YRLN+FPI +PPLRER EDIPLL F K R+LG++I IPA Sbjct: 387 DLEEEVRKGRFRQDLWYRLNIFPITVPPLRERTEDIPLLINLFVNKFGRKLGKSIRRIPA 446 Query: 584 ETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQL--SLPDIVLPEPETPPAATVVALE 641 +++L +WPGNVRELENVIERA + T G LQL +L ++ E P T+ Sbjct: 447 GVMKSLQAYDWPGNVRELENVIERAAINTVGPSLQLLDNLKSSLVTEKTAAPRLTL---- 502 Query: 642 GEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 E E I++VL +TNG + GPKGAA LG+ +TL +RM++LGI Sbjct: 503 EEAERSHILQVLADTNGRIEGPKGAALILGINHSTLRARMRKLGI 547 >UniRef50_C6W352 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Dyadobacter fermentans DSM 18053 RepID=C6W352_DYAFD Length = 693 Score = 350 bits (898), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 184/359 (51%), Positives = 254/359 (70%), Gaps = 5/359 (1%) Query: 332 LLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSV 391 +L+ I +++ AV N LA ++I RL+++L DEN L +QLN +F EI+G EAM V Sbjct: 334 ILQGICAQISTAVSNVLANEQILRLQKQLEDENHYLKQQLN---KDFEEIVGGGEAMQQV 390 Query: 392 LKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLF 451 + + +VA+S++TVL+LGETGTGKELIA+A+H+ S R ++ M+K+NCAAMPA L+ES+LF Sbjct: 391 YRLISLVAESNATVLLLGETGTGKELIAKAVHHTSARKDKLMIKVNCAAMPASLIESELF 450 Query: 452 GHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKII 511 GHERGAFTGA +RIG+FELA+ S+LFLDEVG+MP+E Q KLLRVLQE+E ER+G I Sbjct: 451 GHERGAFTGAVERRIGKFELANNSTLFLDEVGEMPMETQVKLLRVLQEKEMERVGGKTTI 510 Query: 512 QTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIA 571 + +VR+IAATNRDL+ V FRSDLYYRLNVFPI+LPPLR+R EDI LA F K + Sbjct: 511 KLNVRIIAATNRDLEAEVKAGRFRSDLYYRLNVFPINLPPLRDRREDIESLAGFFLAKFS 570 Query: 572 RRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLL-TRGNVLQLSLPDIVLPEPE 630 + +G+ + A LR L WPGNVRELE++IER+V+L T + + LP + Sbjct: 571 KSIGKKTVKLSANALRQLQAYLWPGNVRELEHLIERSVILATDPMIREFFLPQATGATTD 630 Query: 631 TPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKS 689 + + LE + E I++VL+ G ++G GAA+ LG+ T+ S+M++LGI K+ Sbjct: 631 EHTMQSDLTLE-QVERMHIIQVLRRCGGKISGIGGAAEILGIPGNTIHSKMRKLGITKA 688 >UniRef50_A8ZV27 Transcriptional regulator, Fis family n=2 Tax=Desulfobacteraceae RepID=A8ZV27_DESOH Length = 510 Score = 348 bits (892), Expect = 5e-94, Method: Compositional matrix adjust. Identities = 195/412 (47%), Positives = 273/412 (66%), Gaps = 24/412 (5%) Query: 290 FDTWGNQIQTLCLLPLMS--GDTMLGVLKLAQCEEKVFTTTNL-NLLRQIAERVAIAVDN 346 F T G +I L + + T L +L + ++V NL L+++ + +A++ Sbjct: 101 FATIGRKIMHLNARRIYTEPDQTQLILLAIEDVTDRVSYRRNLEGLVKKKTAELTVALEE 160 Query: 347 A--------LAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMV 398 A + EI +LK++L E L E++ ++ IIG+S+ + VL ++E + Sbjct: 161 AEEKNRIAETSLSEIKKLKQQLEAERAYLQEEIK-LEYNHEHIIGQSDGLKYVLYKIEQI 219 Query: 399 AQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAF 458 A SD+TVL+LGETGTGKEL+ARAIHNLS R NR M+K+NCAA+P L+ES+LFGHE+GAF Sbjct: 220 ADSDTTVLVLGETGTGKELVARAIHNLSRRKNRTMLKVNCAALPTNLIESELFGHEKGAF 279 Query: 459 TGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLI 518 TGA A+ GRFE+A+ ++LFLDE+G++PLELQPKLLRVLQ+ EFERLGS+ + D R+I Sbjct: 280 TGAHARHTGRFEVANGTTLFLDEIGELPLELQPKLLRVLQDGEFERLGSSHSTKVDARII 339 Query: 519 AATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNI 578 AATNR+L++ V + FR DL+YRLNVFPI +PPLR+R +DIPLL + + KI+RR+G+ I Sbjct: 340 AATNRNLEEEVRNGNFREDLWYRLNVFPITMPPLRDRLDDIPLLVEFYVKKISRRMGKTI 399 Query: 579 DSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVL----QLSLPDIVLPEPETPPA 634 ++IP++ + TL WPGNVRELENV+ERAV+ + G L +L P L E A Sbjct: 400 ETIPSKIMETLQAYPWPGNVRELENVLERAVINSSGTKLRLVDELKRPFRGLSSSEKTLA 459 Query: 635 ATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 A E IVRVL++T V G AA+ LGL R+TL +RM++L I Sbjct: 460 AV--------ERDHIVRVLEQTQWKVGGKNSAAEILGLDRSTLRARMRKLNI 503 >UniRef50_B5EIR5 Transcriptional regulator, NifA subfamily, Fis Family n=6 Tax=Bacteria RepID=B5EIR5_GEOBB Length = 664 Score = 347 bits (889), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 191/405 (47%), Positives = 272/405 (67%), Gaps = 25/405 (6%) Query: 297 IQTLCLLPLMSGDTMLGVLKLAQCEEKVF----TTTNLNLLRQI------AERVAIAVDN 346 I+++ +P G T++G + K T L LL ++ +R + N Sbjct: 256 IKSIMFIPASVGGTIVGAITFVSYSVKKEWPDELTQRLRLLWEVFANALERKRADQKIQN 315 Query: 347 ALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVL 406 ALA EI +LK+RL EN+ L +Q++ V+ + EIIG+SEA+ +VL+Q++ VA +DSTVL Sbjct: 316 ALA--EIRQLKDRLEAENVYLRDQID-VEYKHEEIIGKSEAIRNVLQQIQQVAPTDSTVL 372 Query: 407 ILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRI 466 ILGETGTGKELIARAIHN R R M+K+NCAA+PA L+E++LFGHE+GA+TGA + +I Sbjct: 373 ILGETGTGKELIARAIHNAGQRKARAMIKVNCAALPAALIEAELFGHEKGAYTGAVSSQI 432 Query: 467 GRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLK 526 GRFE A+ S++FLDE+G++PLELQ KLLRV+QE +FERLG++K ++ DVR+IAATN LK Sbjct: 433 GRFEAANGSTIFLDEIGELPLELQSKLLRVIQEGQFERLGNSKPVKADVRVIAATNVSLK 492 Query: 527 KMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETL 586 + V + +FR DLYYRLNVFPI +PPLR+R EDIPLL A + ++ G+ I+ IP + + Sbjct: 493 QAVKEGKFREDLYYRLNVFPIFVPPLRDRQEDIPLLVWAMVEEFSKVFGKTIERIPRKNM 552 Query: 587 RTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPD---IVLPEPETPPAATVVALEGE 643 + WPGN+REL N++ERA++L+ G L + + D EP T AA Sbjct: 553 EIMERYLWPGNIRELRNLVERAMILSNGGTLVVDILDGSAAAANEPMTMEAA-------- 604 Query: 644 DEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDK 688 E + I +L++T + G GAA+ L +K TTL SR+K+LG+ + Sbjct: 605 -ERKHIGFILEKTGWRIRGKGGAAEILDMKPTTLHSRIKKLGVKR 648 >UniRef50_C7PN78 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PN78_CHIPD Length = 541 Score = 346 bits (888), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 193/410 (47%), Positives = 267/410 (65%), Gaps = 13/410 (3%) Query: 293 WGN-QIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALA-- 349 W N + + + + +G G+L L + F+ + L I + I + N LA Sbjct: 126 WFNVGVVEMMAVKICNGQQPKGLLYLFTDQRDAFSEVDARLTNAITNILGIGISNILANE 185 Query: 350 -----YQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDST 404 QEI R +++L +EN L EQ + + F +I+G S M + + VA S+ST Sbjct: 186 TIEKQLQEIERFRQKLQNENHYLQEQ-QGLQNTFADIVGTSAEMQRRITILSRVAPSEST 244 Query: 405 VLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQ 464 VL+LGETGTGKE+ ARAIH S R + M+K+NCAA+P L+ES+LFGHE+G+FTGA+ + Sbjct: 245 VLLLGETGTGKEVFARAIHAGSPRRDNLMIKVNCAALPPHLIESELFGHEKGSFTGATQR 304 Query: 465 RIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRD 524 RIG+FELAD S+LFLDE+G++PLE Q KLLRVLQE+E ER+G I+ +VR++AATNR+ Sbjct: 305 RIGKFELADHSTLFLDEIGELPLEFQSKLLRVLQEKEIERIGGKGSIKVNVRIVAATNRN 364 Query: 525 LKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAE 584 L++ V FRSDLYYRL+VFPI +PPLRER EDIP LA F + A R SI A+ Sbjct: 365 LEEEVRAGRFRSDLYYRLHVFPIAIPPLRERKEDIPALANHFLQRFAANSRREAPSISAK 424 Query: 585 TLRTLSNMEWPGNVRELENVIERAVLLTRGNVL-QLSLPDIVLPEPETPPAATVVALE-G 642 + L + EWPGNVRELE+++ER +LLT V+ ++ LP + + + P + ++ L+ Sbjct: 425 AMEGLMHYEWPGNVRELEHLMERTLLLTTTPVIAKIDLPGVPVTASKDPDSTFILPLDLM 484 Query: 643 EDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSALI 692 E EY I++VLK NG +AGP GAA +L L TTL SRMK+LGI KS + Sbjct: 485 EKEY--ILKVLKLCNGRIAGPNGAAAKLKLPSTTLNSRMKKLGIKKSHYV 532 >UniRef50_C6VTN7 Sigma 54 interacting domain protein n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VTN7_DYAFD Length = 479 Score = 345 bits (886), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 184/391 (47%), Positives = 260/391 (66%), Gaps = 16/391 (4%) Query: 313 GVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALA-------YQEIHRLKERLVDENL 365 G L+ E + + L Q++ V++A+ N ++ +EI + +L ++N Sbjct: 90 GHLRFYSDREAISPAIPMALPDQVSSVVSLAIANIVSTEKLSRQLEEIKHYQSQLEEQNA 149 Query: 366 ALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNL 425 L E+ S + +IIG S M V + + V+ ++STVL+LGETGTGKEL+ARAIHN Sbjct: 150 YLLEEAKEGFS-YDDIIGSSGPMQRVFQLLSQVSFTNSTVLLLGETGTGKELVARAIHNS 208 Query: 426 SGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDM 485 S R +R MV++NCAA+PA L+ES+LFGHE+G+FTGA +RIG+FELA++++LFLDE+G+M Sbjct: 209 SARKDRLMVRVNCAAIPAHLIESELFGHEKGSFTGAFERRIGKFELANQATLFLDEIGEM 268 Query: 486 PLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVF 545 PL++Q KLLR +QE+E ER+G +I+ DVR+IAATNR+L + V FRSDL+YRL+VF Sbjct: 269 PLDMQAKLLRAIQEREIERIGGKGVIKVDVRIIAATNRNLLEEVQQGRFRSDLFYRLHVF 328 Query: 546 PIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVI 605 PI LPPLRER DI LLAK F + A+ G++I I + ++ L WPGNVRELE+ + Sbjct: 329 PITLPPLRERTGDISLLAKQFVGRFAKNNGKSISRISSNVMKALLAYPWPGNVRELEHQM 388 Query: 606 ERAVLLTRGNVLQLSLPDIVLPEP----ETPPAATVVALEGEDEYQLIVRVLKETNGVVA 661 ER VLL R +V++ D++LP P P A E+E + I+RVL + NG + Sbjct: 389 ERCVLLARDHVIR----DVLLPSPTQSGHAPAAGIYTKTHEENEREYIIRVLNQCNGKIY 444 Query: 662 GPKGAAQRLGLKRTTLLSRMKRLGIDKSALI 692 GP GAAQ L LK TL S++K+LGI K +I Sbjct: 445 GPGGAAQLLNLKVGTLNSKIKKLGISKEQII 475 >UniRef50_A8IQ96 Transcriptional regulator n=18 Tax=Proteobacteria RepID=A8IQ96_AZOC5 Length = 694 Score = 343 bits (880), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 187/342 (54%), Positives = 233/342 (68%), Gaps = 5/342 (1%) Query: 349 AYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLIL 408 A E+ RL+ERL EN L E++ S G IIGRSEA+ VL+QV++VA +D+TVLI Sbjct: 344 ALAEVDRLRERLEMENAYLQEEIRAETSHRG-IIGRSEAIKKVLRQVDLVAPTDATVLIT 402 Query: 409 GETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGR 468 GE+GTGKELIARAIH+ S R R ++++NCAA+P L ES+ FGH RGAFTGA R+GR Sbjct: 403 GESGTGKELIARAIHDASERRERPLIRVNCAAIPRELFESEFFGHVRGAFTGALRDRVGR 462 Query: 469 FELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKM 528 FELAD+ +LFLDEVG++PLELQ KLLRVLQE +FER+G + Q DVR+IAATNRDLK Sbjct: 463 FELADRGTLFLDEVGEIPLELQSKLLRVLQEGQFERIGEERTRQVDVRIIAATNRDLKAA 522 Query: 529 VADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRT 588 V FR DL+YRL+V PI PLRER EDIPLLA F + R+ + A +R Sbjct: 523 VRAGRFREDLFYRLDVMPIESVPLRERREDIPLLAAHFLDGVRRKPADGPLQLSAGDMRR 582 Query: 589 LSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETP-PAATVVALEGEDEYQ 647 L +WPGNVREL+NVIER ++L R L + LPD P P P + + E + + Sbjct: 583 LQTYDWPGNVRELQNVIERGIILARNGRLHIDLPDREAPATAQPVPPSAELETEADRRLR 642 Query: 648 L---IVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 L I+ L+ G V+GP GAA+RLGLK TTL SRMK LGI Sbjct: 643 LRTSILAALEAAGGKVSGPGGAAERLGLKPTTLASRMKTLGI 684 >UniRef50_C7LPL8 Sigma54 specific transcriptional regulator with PAS/PAC sensor, Fis family n=2 Tax=Deltaproteobacteria RepID=C7LPL8_DESBD Length = 575 Score = 343 bits (880), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 178/364 (48%), Positives = 251/364 (68%), Gaps = 2/364 (0%) Query: 328 TNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEA 387 TN L+ +I R +A +EI +LK+RL EN+ L + FGEIIG+S A Sbjct: 214 TNKRLVLEIGVRKDTEESLRMAIKEIKQLKDRLQAENIYLQHEAAQ-KFNFGEIIGQSSA 272 Query: 388 MYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLE 447 + V ++E +A ++TVL+ GETG GK ++ARAIH S R +R MV +NC A+PA L+E Sbjct: 273 IAHVFDKIEQIASQNTTVLLQGETGCGKGVVARAIHARSARKDRAMVTINCTALPANLIE 332 Query: 448 SDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGS 507 S+LFG E+GAFTGASA+++GRFELAD ++FLDE+G+MP+ELQ KLLRV+Q+ EFERLGS Sbjct: 333 SELFGREKGAFTGASARQMGRFELADGGTIFLDEIGEMPMELQCKLLRVIQDGEFERLGS 392 Query: 508 NKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFT 567 + I+ DVR+IAA+NR L++ + + FR DLYYRLNVFPI +PPLR R +DI LL F Sbjct: 393 PRTIKVDVRIIAASNRKLEEEIKNGSFREDLYYRLNVFPITIPPLRARKDDIRLLVNFFV 452 Query: 568 FKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLP 627 K +++G+ I++IP E L L N +WPGNVRELE+VIERA+++++G LQ+ P Sbjct: 453 AKFNKKIGKKIETIPKEALEALENYDWPGNVRELESVIERAIIISKGPSLQILDQFNTSP 512 Query: 628 EPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 +P A V AL + E I+ VL++TN V G GAA L + +TL +RM++ GI+ Sbjct: 513 KPSETSGADVKALV-DLERDHIIHVLQKTNWRVEGKNGAAAILDINPSTLRARMRKFGIN 571 Query: 688 KSAL 691 ++++ Sbjct: 572 RNSI 575 >UniRef50_B3U4Q6 Nif-specific regulatory protein n=3 Tax=Bacteria RepID=B3U4Q6_9BACT Length = 517 Score = 341 bits (875), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 202/512 (39%), Positives = 311/512 (60%), Gaps = 14/512 (2%) Query: 186 NFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDK 245 NF L+ +TNA+ S+ D+D L +A +I D I L + + Y+ + Sbjct: 7 NFETLLEVTNALNSQRDIDSLWRVIADQIRKVIPWDRAGITLYESQTDSFRFYAV-ITNM 65 Query: 246 QHPA-HEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQ--IQTLCL 302 PA S + G+ V ++ LH R+DL + L D + Q + + Sbjct: 66 ATPALAHDSVIPREGSAVGWVHDNRR-----LHIREDLQKEQVFLEDRYYVQEGLGRMIN 120 Query: 303 LPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVD 362 +PL+ D LG L + + + L+Q+A ++A A+D+ LAY++I +L +RL Sbjct: 121 MPLLVRDHCLGTLNIGSVQTGHLDQDDCKFLQQVATQIAYAIDHVLAYEQIQQLSDRLRR 180 Query: 363 ENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAI 422 EN L E++ ++G S + V+ ++ VA +D+TVL+LGETGTGKE++A+A+ Sbjct: 181 ENEYLAEEVK-ASRNLRLVVGTSSSFRKVVDLLKAVAPTDTTVLLLGETGTGKEVLAQAL 239 Query: 423 HNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEV 482 H+LS R ++ +++NCAA+P+GL+ES+LFGHERGAFTGA +R GRFELA +LFLDE+ Sbjct: 240 HDLSLRCHKPFIRVNCAALPSGLIESELFGHERGAFTGAQLRRAGRFELAHTGTLFLDEI 299 Query: 483 GDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRL 542 G+MPLE Q KLLRVLQ+ +R+G + + DVRL+AATN DL+ V FR+DL+YRL Sbjct: 300 GEMPLETQAKLLRVLQDGMVDRIGGTQPVAVDVRLVAATNADLQAAVRQGTFRADLFYRL 359 Query: 543 NVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELE 602 ++FPI LPPLR+R EDI LLA+ F I +L R + +++ L WPGNVREL+ Sbjct: 360 HIFPIALPPLRDRREDIHLLAQHFLALIGGKLKRAHLAFDPQSMARLLTYNWPGNVRELQ 419 Query: 603 NVIERAVLLTRGNVLQLSLPDIVLP--EPETPPAATVVALEGEDEYQLIVRVLKETNGVV 660 NVIERAV+L+ + Q+++ +++LP + P++++ G+ E I+ VL++T + Sbjct: 420 NVIERAVILSGSS--QVTVDEMLLPVVQAVHSPSSSLPVSLGDLERYHIIEVLEQTKWRI 477 Query: 661 AGPKGAAQRLGLKRTTLLSRMKRLGIDKSALI 692 G +GAA LGL TL SR+++LG+ + + I Sbjct: 478 YGEQGAAHLLGLNPETLRSRLRKLGLRRPSSI 509 >UniRef50_Q1PYB5 Similar to sigma 54 response regulatory protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYB5_9BACT Length = 645 Score = 339 bits (870), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 177/338 (52%), Positives = 240/338 (71%), Gaps = 5/338 (1%) Query: 349 AYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLIL 408 A EI LK+RL EN+ L + N F +I+G+S+++ VL + E VA +++TVLIL Sbjct: 304 ALSEIKTLKDRLEAENIYLRHE-NKRRHHFAQILGQSDSLKYVLYRAEQVAPTNATVLIL 362 Query: 409 GETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGR 468 GETGTGKELIA AIH++S R R M+ +NCAA+P L+ES+LFG E+GAFTGA +RIGR Sbjct: 363 GETGTGKELIAFAIHDMSPRKERPMITVNCAALPGNLIESELFGREKGAFTGADTRRIGR 422 Query: 469 FELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKM 528 FE+A+ S+L LDE+G++PLELQ KLLRV+Q EFERLGS I+ DVR++A TNR+L++ Sbjct: 423 FEVANGSTLCLDEIGELPLELQAKLLRVIQHNEFERLGSPHTIKVDVRIVATTNRNLEEE 482 Query: 529 VADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRT 588 + + FR DLYYRLNVFPI +PPLR+R EDIPL+ AF + +R+LG+ I SI E ++ Sbjct: 483 IRNGRFRQDLYYRLNVFPITVPPLRQRKEDIPLMVHAFVERYSRKLGKQITSIQKEAMKA 542 Query: 589 LSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGEDEYQL 648 L + WPGNVRELE++IERAV+L G VLQL+ D + E +P ++ V E E Sbjct: 543 LQDYPWPGNVRELESIIERAVILCPGPVLQLA--DKL--EISSPAFSSTVRTLEETERDQ 598 Query: 649 IVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 I+++L ET + G GAA LG+ +TL +RM +LGI Sbjct: 599 ILKILSETRWRIEGKNGAAAILGIHPSTLRARMHKLGI 636 >UniRef50_Q086E2 Two component, sigma54 specific, transcriptional regulator, Fis family protein n=1 Tax=Shewanella frigidimarina NCIMB 400 RepID=Q086E2_SHEFN Length = 516 Score = 337 bits (864), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 183/369 (49%), Positives = 246/369 (66%), Gaps = 12/369 (3%) Query: 325 FTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGR 384 T TNL L +I ER Y +I +LK++L EN L +++ F EIIG Sbjct: 154 LTKTNLQLGLEIEERKKAEASLRDTYTQIKQLKDKLQAENTYLQKEVAR-QFNFDEIIGS 212 Query: 385 SEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 444 S+ + V ++VE VA +TVL+LGETGTGK ++ARAIH+ S R R ++ ++C +P Sbjct: 213 SKLLSQVFQKVEQVAPMHATVLLLGETGTGKGVVARAIHSRSSRKKRPLITVDCTTLPVA 272 Query: 445 LLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFER 504 L+ES+LFG ERGAFTG+ +++IGRFELAD +LFLDE+G+MPLE+Q KLLRV+Q+ EFER Sbjct: 273 LIESELFGRERGAFTGSDSKQIGRFELADGGTLFLDEIGEMPLEMQAKLLRVIQDGEFER 332 Query: 505 LGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAK 564 LGS + I+ DVR+IAATNR+L + V + +FR DLYYRLNVFPI LPPLR+R EDI LL Sbjct: 333 LGSPRTIKVDVRIIAATNRNLIEEVRNGKFREDLYYRLNVFPITLPPLRQRKEDISLLVN 392 Query: 565 AFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQL----- 619 F K +++G+ ID I + L TL +WPGNVRELE+ IERAV+L+ G LQ+ Sbjct: 393 HFLIKFNKKIGKQIDIITQDALNTLQQHQWPGNVRELESAIERAVILSEGKSLQILDRFE 452 Query: 620 SLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLS 679 S L E P +V L EY+ IV+VL++T + G KGAA LGL +TL + Sbjct: 453 SFDK--LATIEEPSMKALVEL----EYEHIVKVLQQTGWRIEGNKGAALILGLNPSTLRA 506 Query: 680 RMKRLGIDK 688 RM++ GI + Sbjct: 507 RMRKQGITR 515 >UniRef50_UPI00016C5695 DNA-binding protein Fis / transcriptional regulator, Fis family n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C5695 Length = 635 Score = 337 bits (863), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 181/346 (52%), Positives = 240/346 (69%), Gaps = 25/346 (7%) Query: 353 IHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETG 412 + R + RL +N+ L E+L + F EI+G+S A+ SVL++V VA +DSTVLI GETG Sbjct: 299 MEREQARLQQQNVYLQEELKAAHN-FDEIVGQSPALVSVLQRVSKVAGTDSTVLITGETG 357 Query: 413 TGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELA 472 TGKEL+ARA+H+ S R + ++K+NCAA+P L+ES+LFGHE+GAFTGA A++ GRFELA Sbjct: 358 TGKELVARAVHSASPRKAKPLIKLNCAALPTHLVESELFGHEKGAFTGAVARKPGRFELA 417 Query: 473 DKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADR 532 D +LFLDEVG++ LE Q KLLRVLQE+EFER+G ++ DVR+IAATNRDL ++V + Sbjct: 418 DGGTLFLDEVGELSLEAQAKLLRVLQEREFERVGGTAPVKVDVRVIAATNRDLAQLVKEG 477 Query: 533 EFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNM 592 FR+DL YRLNVFP+ LP LRERP DIPLL + F K A RLG+ I+ + +TL L Sbjct: 478 AFRADLLYRLNVFPVRLPALRERPGDIPLLVRFFVTKFAGRLGKRIERVSGDTLDALVGY 537 Query: 593 EWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAA------------TVVAL 640 +WPGN+RELENVIERA +L+ G P++V+ +P+ P ++VA+ Sbjct: 538 DWPGNIRELENVIERAAILSDG-------PELVI-DPDVLPVTRGGAAPAGAGGQSLVAV 589 Query: 641 EGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 E + I VL +T V+ GP GAA LGL TL SRMK+LGI Sbjct: 590 EADH----IRSVLAQTGWVIEGPNGAATVLGLHPNTLRSRMKKLGI 631 >UniRef50_C7PEX2 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PEX2_CHIPD Length = 653 Score = 337 bits (863), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 171/326 (52%), Positives = 238/326 (73%), Gaps = 16/326 (4%) Query: 374 VDSE--FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNR 431 +D+E F I+GRS SVL + MV+ + S+VLILGE+GTGKELIAR IH S R N+ Sbjct: 327 IDNEVLFEGIVGRSPVFLSVLHSINMVSAAPSSVLILGESGTGKELIARCIHRQSPRKNK 386 Query: 432 RMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQP 491 ++ +NCAA+PA L+ES+LFGHE+GAFTGA+ +R G+FE+AD ++FLDE+G++P+E Q Sbjct: 387 PLITVNCAALPAELIESELFGHEKGAFTGATDKRAGKFEMADGGTIFLDEIGELPIESQV 446 Query: 492 KLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPP 551 KLLRVLQE+EFER+G +K+I+ DVR+IAATNR+L+K VA+ FR DLYYRLNVFP+ LP Sbjct: 447 KLLRVLQEKEFERVGGSKVIKVDVRVIAATNRNLEKEVAEGRFRLDLYYRLNVFPVELPS 506 Query: 552 LRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLL 611 LRER EDIPLLA+ F K++ +L RNI I + L+ L + +WPGN+RE+E+V+ER++L+ Sbjct: 507 LRERKEDIPLLAQHFVDKLSEKLSRNITDISPDALKALRSYDWPGNIREMEHVMERSLLM 566 Query: 612 TRGNVLQLSLPDIVLPEPETPPAATVVA---------LEGEDEYQLIVRVLKETNGVVAG 662 T G +L+ I+LP+ P T ++ LE E E + I++VLK G V G Sbjct: 567 TTGTILK----QIMLPKMAAQPVGTTISSADGNRIKTLE-EMEIEHILQVLKSCKGKVCG 621 Query: 663 PKGAAQRLGLKRTTLLSRMKRLGIDK 688 GAA+ LGL +TL S++++LGI + Sbjct: 622 VGGAAELLGLPPSTLNSKIRKLGIKR 647 >UniRef50_D2QLL9 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QLL9_9SPHI Length = 875 Score = 336 bits (862), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 185/388 (47%), Positives = 257/388 (66%), Gaps = 6/388 (1%) Query: 303 LPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVD 362 +P+ S + L LA FT +L L+ I+ +A+A++N AY+ I L E L Sbjct: 482 VPIFSKGKPIAALILASKAAYAFTPKDLCTLQDISVELALALENLSAYERIKVLSEHLEQ 541 Query: 363 ENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAI 422 E L E++ F EIIG S +M +V + VA +D TVLI+GETGTGKELIARA+ Sbjct: 542 EKTYLAEEIKT-SHNFEEIIGTSSSMQTVFNAIGQVAPTDYTVLIMGETGTGKELIARAV 600 Query: 423 HNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEV 482 H+LS R +R +VK+NCAA+PA L+ES+LFGHERG+FTGA+ +RIG+FELA+ +LFLDE+ Sbjct: 601 HSLSARRDRPVVKINCAALPAQLIESELFGHERGSFTGATEKRIGKFELANGGTLFLDEI 660 Query: 483 GDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRL 542 G++PLELQ KLLR +QE+E ER+G +I + R+IAATNR+L++ VA FRSDLYYRL Sbjct: 661 GELPLELQAKLLRAIQEKEIERVGGKGVILINTRIIAATNRNLQQEVAAGRFRSDLYYRL 720 Query: 543 NVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELE 602 NVFPI +PPLRER EDI L F KI+++LG+ I +I +L+ L WPGN+RELE Sbjct: 721 NVFPIVVPPLRERQEDILPLTMHFLQKISKKLGKPITNIANASLQQLLQYPWPGNIRELE 780 Query: 603 NVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEG---EDEYQL-IVRVLKETNG 658 +V+ER+ +L++ L L+ P + PP + E +D +L I+ L ++ Sbjct: 781 HVLERSSILSQSATLTLAEP-LRAATTAFPPFVVQSSEEVKSIDDAMRLAILAALAKSGN 839 Query: 659 VVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 + G GAA+ L +K TTL +RMK+L I Sbjct: 840 RIRGTGGAAELLNIKPTTLEARMKKLNI 867 >UniRef50_A0LIA2 Sigma54 specific transcriptional regulator, Fis family n=7 Tax=Proteobacteria RepID=A0LIA2_SYNFM Length = 1139 Score = 335 bits (860), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 179/337 (53%), Positives = 241/337 (71%), Gaps = 6/337 (1%) Query: 352 EIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGET 411 EI RLK +L +N+AL E+++ + S +I+ RS AM VL +VE VA +DSTVLI GET Sbjct: 806 EIERLKGQLEQDNIALREEVSLL-SPHDDIVARSPAMRQVLLRVEQVAPTDSTVLITGET 864 Query: 412 GTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFEL 471 GTGKELIARA+HNLS R R +V +NCA++P L+ES+LFG E+GA+TGA ++ GRFE+ Sbjct: 865 GTGKELIARAVHNLSARKGRPLVTVNCASLPPTLMESELFGREKGAYTGALSRMAGRFEV 924 Query: 472 ADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVAD 531 AD +LFLDEVG++P ELQ K+LRVL+E FERLGS K + +VR++AATNRDL ++V Sbjct: 925 ADGGTLFLDEVGELPPELQAKMLRVLEEGRFERLGSTKSLHVNVRILAATNRDLAQLVQA 984 Query: 532 REFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSN 591 FR DLYYRLNVFPI +PPLRERPEDIP L AF + +R+G+++ + ++ L Sbjct: 985 GRFRRDLYYRLNVFPIAIPPLRERPEDIPPLVWAFIHQFEKRMGKHVQRVLKRSMDALER 1044 Query: 592 MEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGEDEYQLIVR 651 WPGNVREL NVIE A++++ G+ L++ P ++ E + A V+ LE E E + I+R Sbjct: 1045 HAWPGNVRELRNVIEHAMIVSSGSTLKV-FPPMIRAEDSS---AEVLNLE-ESERRHILR 1099 Query: 652 VLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDK 688 VL VAG GAA+ LGLK TTL +RMK+LG+ + Sbjct: 1100 VLTLAGWRVAGKGGAAEILGLKPTTLEARMKKLGVRR 1136 >UniRef50_B4DAQ1 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DAQ1_9BACT Length = 987 Score = 333 bits (855), Expect = 9e-90, Method: Compositional matrix adjust. Identities = 184/355 (51%), Positives = 239/355 (67%), Gaps = 22/355 (6%) Query: 357 KERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKE 416 K RL +N L E++ + F EI+G S ++ VL+QV+ VA +DSTVLI GETGTGKE Sbjct: 633 KARLEAQNTYLQEEIRS-QHNFVEIVGNSPSLLQVLRQVDRVASTDSTVLICGETGTGKE 691 Query: 417 LIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSS 476 LIARAIH+ S R R +VK+NC A+ GL+ES+LFGH +GAFTGA A R GRFELAD + Sbjct: 692 LIARAIHDRSPRRERPLVKVNCGAISTGLVESELFGHVKGAFTGAIANREGRFELADGGT 751 Query: 477 LFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRS 536 +FLDEVG++P E Q KLLRVLQEQEFE +GS K ++ DVR+IAATNRDL+ MV + +FRS Sbjct: 752 IFLDEVGELPPETQVKLLRVLQEQEFEPIGSTKTVKVDVRVIAATNRDLETMVREGKFRS 811 Query: 537 DLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPG 596 DL+YRLNV P+ +PPLR+R DIPLL F K AR+LG+++ I ET+ L WPG Sbjct: 812 DLFYRLNVVPLTMPPLRQRANDIPLLTMFFLEKFARKLGKSLGQIAEETMARLCQYPWPG 871 Query: 597 NVRELENVIERAVLLTRGNVLQL---SLPD-----------------IVLPEPETPPAAT 636 N+REL+NVIERAV+L+ G++L + +LP I EP + P Sbjct: 872 NIRELQNVIERAVVLSTGSLLTVEKGALPGATGVMAQGPGWTPERAMIDAAEPLSTPLGA 931 Query: 637 VVALEGED-EYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSA 690 ED E Q I VL++TN + G GAA+ L L+ +TL SRM++LGI + A Sbjct: 932 TSGNALEDVERQHIASVLQQTNWRIEGANGAAKILNLQPSTLRSRMQKLGIVRPA 986 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/189 (25%), Positives = 82/189 (43%), Gaps = 18/189 (9%) Query: 190 LVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVL-------RSHRKNKLNIYSTHY 242 L+ IT A+ L D L +A+ + D I L ++H N+ NI S Sbjct: 314 LLNITRAIGHHLQRDVLFGALAECLQTAVPTDCFGIALPVAGARIQAHILNQKNIRSEGA 373 Query: 243 LDKQHPAHEQSEVDEAGTLTERVFKSKEMLLI-NLHERDDLAPYERMLFDTWGNQIQTLC 301 H A G+ E V K++E + E + P + Q+++ C Sbjct: 374 PPTLHEAK--------GSAAEWVMKNREWYVAATRREVSERFPKTSEMMQR--EQMESAC 423 Query: 302 LLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLV 361 +LPL++GD + G L ++ + + Q+A VA+A+D+ L +E+ RL E L Sbjct: 424 VLPLVAGDRVRGALFFLAAGKESYAALQHAFMNQVASAVAVALDDCLVQEEMRRLGEELA 483 Query: 362 DENLALTEQ 370 + +A EQ Sbjct: 484 AQKIARLEQ 492 >UniRef50_A7H973 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Anaeromyxobacter sp. Fw109-5 RepID=A7H973_ANADF Length = 602 Score = 333 bits (854), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 176/337 (52%), Positives = 235/337 (69%), Gaps = 6/337 (1%) Query: 355 RLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTG 414 R +E++ +ENLAL +++ S F EI+G SE + VL QV VA +DSTVLILGETGTG Sbjct: 262 RAEEKVRNENLALRGEIDG-SSMFEEIVGSSEGLRRVLAQVAKVAPTDSTVLILGETGTG 320 Query: 415 KELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADK 474 KELIARAIH S R+ + +++NCAA+P+ L+ S+LFGHE+GAFTGA +R GRFE A+ Sbjct: 321 KELIARAIHRQSSRSTQAFIRVNCAAIPSSLITSELFGHEKGAFTGAVQRRTGRFESANG 380 Query: 475 SSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREF 534 ++FLDEVGD+ E Q LLRVLQE+EFER+GS++ I DVR++AAT+RDL+ V F Sbjct: 381 GTIFLDEVGDLTAETQIALLRVLQEREFERIGSSRPISVDVRVLAATHRDLEAAVEAGTF 440 Query: 535 RSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEW 594 R DL+YRLNVFP+ +PPLRER +DIPLLA+ + AR G++I +I TL + +W Sbjct: 441 RQDLFYRLNVFPLQIPPLRERRDDIPLLAEYLIARYARTAGKSIRNIGKRTLESFRAYDW 500 Query: 595 PGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEG---EDEYQLIVR 651 PGNVREL+NV+ERAV+L G ++ + L + PA V+L G + E Q+I Sbjct: 501 PGNVRELQNVVERAVILCDGET--FAVDETWLTRETSAPAGRSVSLAGSLADSERQMIEA 558 Query: 652 VLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDK 688 L + G V+GP GAA RLG+ R TL SR++ L IDK Sbjct: 559 ALAASRGRVSGPSGAAIRLGIARQTLESRIQALHIDK 595 >UniRef50_B5WAL2 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Burkholderia sp. H160 RepID=B5WAL2_9BURK Length = 595 Score = 332 bits (852), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 174/317 (54%), Positives = 231/317 (72%), Gaps = 5/317 (1%) Query: 374 VDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRM 433 +++E G + + + V++ V VA +D++VL+ GETGTGKELIA+A+H +S R+ + + Sbjct: 284 LEAEAGADLVGTAGLQGVMQHVRQVAGTDASVLVTGETGTGKELIAQALHRMSARSGKPL 343 Query: 434 VKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKL 493 VK+NCA +PA L+ES+LFGHE+GAFTGA A++ GRFELAD+ +LFLDEVG++PL+LQ KL Sbjct: 344 VKLNCAVLPANLVESELFGHEKGAFTGALARKAGRFELADEGTLFLDEVGELPLDLQAKL 403 Query: 494 LRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLR 553 LRVLQ EFERLGS + +TDVR+IAATNR+L + A FR+DLYYRLNVFPI LPPLR Sbjct: 404 LRVLQNGEFERLGSIRTQKTDVRIIAATNRNLAEEAATGRFRADLYYRLNVFPIELPPLR 463 Query: 554 ERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTR 613 RPEDI L + F A + GR+ID++ L L WPGNVREL++VIERAV+LT+ Sbjct: 464 ARPEDIEQLVEHFVRHYAAKYGRHIDAVADAQLNVLRAYRWPGNVRELQHVIERAVILTQ 523 Query: 614 GNVLQLSLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLK 673 G+ QL+L D TPPA + LE + E I++VL++T+ V+G GAA+RLGL Sbjct: 524 GS--QLALGDWF--RDATPPACEALTLE-DAERAHILKVLEQTDWRVSGKAGAAERLGLP 578 Query: 674 RTTLLSRMKRLGIDKSA 690 TTL SRMKRL I + A Sbjct: 579 PTTLESRMKRLAITRKA 595 >UniRef50_Q2LUG3 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LUG3_SYNAS Length = 535 Score = 332 bits (850), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 170/366 (46%), Positives = 253/366 (69%), Gaps = 12/366 (3%) Query: 331 NLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYS 390 ++ R + E+ + + A A+ EI RLK++L EN+ L +++ + FGEIIG S+ + S Sbjct: 170 SMARDVTEQHRLEAELAKAFDEIKRLKDQLEAENIYLRDEIK-LKEGFGEIIGASDVIKS 228 Query: 391 VLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDL 450 + ++ VA S +TVL GETGTGK + AR +H S R +R V +NCA++PA L+ES+L Sbjct: 229 TIHKIRQVAPSKTTVLFAGETGTGKGIFARFLHRESDRRDRPFVNVNCASLPANLIESEL 288 Query: 451 FGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKI 510 FG E+GA+TG++A++IGRFELA+ ++FLDE+G++P+ELQ KLL+V++E EFER+GS Sbjct: 289 FGREKGAYTGSTARQIGRFELANNGTIFLDEIGEVPMELQAKLLKVIEEGEFERIGSPHP 348 Query: 511 IQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKI 570 I+ DVR+IAATNRDL++ + FR DLY+RLN+FPI++PPLR+R DIPLL KAF K Sbjct: 349 IKVDVRIIAATNRDLQEEIKKGRFRQDLYFRLNIFPINIPPLRDRKGDIPLLVKAFVAKF 408 Query: 571 ARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLP--- 627 ++ R+I IPA+ + +L N WPGNVREL NV+ERAV+++ G+ LQL+ +P Sbjct: 409 SKSHNRDIKRIPAKIMESLKNYAWPGNVRELINVMERAVIVSEGSELQLAEKIDAIPLDS 468 Query: 628 -----EPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMK 682 E + + +A + E + I++ L++T + GP+GAAQ L L+ TL +RMK Sbjct: 469 SIRGDESFSTGSGETLA---DAEREHILKALQQTGWRIEGPRGAAQILDLQPNTLRARMK 525 Query: 683 RLGIDK 688 +LGI + Sbjct: 526 KLGIKR 531 >UniRef50_C7LTG8 Sigma54 specific transcriptional regulator with PAS/PAC sensor, Fis family n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LTG8_DESBD Length = 806 Score = 330 bits (846), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 169/340 (49%), Positives = 240/340 (70%), Gaps = 3/340 (0%) Query: 349 AYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLIL 408 A +EI++LK+RL EN+ L +++ + FGEIIG+S+++ ++ +Q+E V+ ++TVL+L Sbjct: 469 ANKEINQLKDRLQAENICLRQEVAR-EYNFGEIIGQSDSIVNMFEQIEQVSPLNATVLLL 527 Query: 409 GETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGR 468 GETGTGK L+ARAIH S R R M+ +NCAA+PA L+ES+LFG ERGAFTG++AQ++GR Sbjct: 528 GETGTGKGLVARAIHARSARKGRSMITVNCAALPANLIESELFGRERGAFTGSNAQQLGR 587 Query: 469 FELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKM 528 FELAD ++FLDE+G+MPLELQ KLLRV+Q+ E ERLGS + I+ DVR+IAA+NR+L+ Sbjct: 588 FELADGGTIFLDEIGEMPLELQSKLLRVIQDGEMERLGSPRTIKVDVRIIAASNRNLQDE 647 Query: 529 VADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRT 588 + FR DL+YRLNVFPI +PPLR+R DI LL F K ++ G+NI ++P TL Sbjct: 648 IRKGRFREDLFYRLNVFPISIPPLRQRDGDIALLINFFVAKFNKKTGKNIKTVPKNTLNA 707 Query: 589 LSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGEDEYQL 648 L WPGNVRELE+V+ERAV+ + G+ LQ+ L P + AL + E Sbjct: 708 LQEYHWPGNVRELESVVERAVITSPGSSLQI-LDRFETSRKTVPVDGNIKALV-DLERDH 765 Query: 649 IVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDK 688 I++VL++T + G GAA L + +TL +RM++ GI + Sbjct: 766 ILQVLRKTGWRIEGKSGAAALLEINPSTLRARMRKFGIRR 805 >UniRef50_C1ZA32 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains n=10 Tax=Bacteria RepID=C1ZA32_PLALI Length = 551 Score = 330 bits (846), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 188/399 (47%), Positives = 260/399 (65%), Gaps = 16/399 (4%) Query: 304 PLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDE 363 PL+ +LGVL + ++ + LR IA+ A A+ A A+ EI L++RL E Sbjct: 148 PLIHRGKVLGVLGV--FARQIIGEECMGWLRMIADHAAAAIVTARAFAEIESLRKRLELE 205 Query: 364 NLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIH 423 N L E++ + FGE+IG+S A+ +V +Q+++VA +DS+VLILGE+GTGKEL+AR IH Sbjct: 206 NEYLREEVTGSGA-FGELIGQSPALGTVSQQIDLVAPTDSSVLILGESGTGKELVAREIH 264 Query: 424 NLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVG 483 S R+NR ++K+NCAA+P L ES+ FGH +GAFTGA R+GRFELAD +LFLDEVG Sbjct: 265 RRSRRSNRPLIKVNCAAVPRELYESEFFGHAKGAFTGALRDRVGRFELADGGTLFLDEVG 324 Query: 484 DMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLN 543 ++PLELQ KLLRVLQE E ER+G + + +VR+IAATNRDL+ FR DLYYRL+ Sbjct: 325 EIPLELQAKLLRVLQEGELERVGEERTRKVNVRIIAATNRDLRMEAEAGRFRQDLYYRLS 384 Query: 544 VFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELEN 603 VFP+ +PPLR R ED+PLLA F AR++GR + ++ L +WPGNVREL++ Sbjct: 385 VFPVEVPPLRRRKEDVPLLASHFLRIAARKVGRPQPLLTLAIVQKLQQYDWPGNVRELQH 444 Query: 604 VIERAVLLTRGNVLQLSLPDIVLPEP----ETPPAATVVALE---------GEDEYQLIV 650 VIERAV+ + L + LP +P ++P +T + E + E + I+ Sbjct: 445 VIERAVITSTNERLLIELPQTTGSKPTRSVKSPSNSTATSQEIPIRTDLEIRQMEAENIL 504 Query: 651 RVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKS 689 L+ T+G ++GP GAA LGLK TTL SR+K LGI + Sbjct: 505 AALQATHGKISGPGGAAALLGLKPTTLASRIKALGIKPA 543 >UniRef50_A4SC79 DNA-binding protein Fis / transcriptional regulator, Fis family n=11 Tax=Bacteria RepID=A4SC79_PROVI Length = 704 Score = 329 bits (843), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 182/376 (48%), Positives = 246/376 (65%), Gaps = 15/376 (3%) Query: 325 FTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGR 384 F L L I ++++A+ N LA+ EI L++RL E L E++ V + F EIIG Sbjct: 328 FEEAELATLNLIIPQLSLALQNLLAFDEIDTLRQRLEGERTYLKEEIRAVHN-FEEIIGT 386 Query: 385 SEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 444 S + +VL++V VA +D+TVLI GETGTGKEL ARAIH LS RN R +V++NCAA+PA Sbjct: 387 SAPLAAVLRRVSQVAPTDATVLIQGETGTGKELFARAIHTLSPRNERVLVRVNCAALPAT 446 Query: 445 LLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFER 504 L+ES+LFGHE+G+FTGA+ +RIG+FELAD ++FLDE+G++PLELQ K+LRVLQE+E ER Sbjct: 447 LIESELFGHEKGSFTGATGRRIGKFELADGGTIFLDEIGELPLELQSKMLRVLQEREIER 506 Query: 505 LGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAK 564 LG K+I +VR+IAA+NRDL+K VA FR+DL++RLN FPI LPPLR R DI +LA Sbjct: 507 LGGGKLIPVNVRVIAASNRDLQKEVAAGRFRADLFFRLNAFPIFLPPLRARTGDISMLAL 566 Query: 565 AFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDI 624 F K AR GR I ++ L +W GN+REL + IE+AV+LT G VL S I Sbjct: 567 HFAQKFAREFGRPNRPIRERDMQELKERQWKGNIRELAHAIEQAVILTDGPVLDFS--TI 624 Query: 625 VLPEPETPPAATVVALEG------------EDEYQLIVRVLKETNGVVAGPKGAAQRLGL 672 + P A + +G E E LI+ L + G V+G GAA+ L + Sbjct: 625 LTPRSRHLAALSPSPAKGIQSMAIFEEEVREMERTLILDALDQAKGRVSGKGGAAELLSI 684 Query: 673 KRTTLLSRMKRLGIDK 688 TL +R+++LG+ K Sbjct: 685 HPKTLYTRIEKLGLRK 700 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 55/247 (22%), Positives = 109/247 (44%), Gaps = 18/247 (7%) Query: 188 RILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQH 247 R+ I++AV S D EL + ++ F D IV + ++++ +L Sbjct: 11 RLTQYISDAVGSVRDPQELFHTLTDKLRLMFKFDSAVIVTIDKDRRYVSVFFEMFLFPIA 70 Query: 248 PAHEQSEVDEAGTLTERVFKSKEMLLINLHER-----DDLAPYERMLFDTWGNQIQTLCL 302 + AG+ E + +++ + +D P ++ +D QI L Sbjct: 71 QGFANEKRLLAGSWFEPFLTKPAVATVSIGDELRRHGNDSYPILKIFYDAGMRQI---VL 127 Query: 303 LPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVD 362 PL+SG ++G L +EK ++ +LL + +++AV NALAY E L++R + Sbjct: 128 SPLLSGGEVIGFLNFVSRDEKAWSEAERDLLASVTSPISMAVSNALAYDE---LRQREAE 184 Query: 363 ENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQV-EMVAQSDSTVLILGETGTGKELIARA 421 + L V++ I R + + +V +Q+ +++ + + G+ GT + L Sbjct: 185 TAMQLA-----VNNALMTIRDRGQMLLAVCEQISKLLPVVYLGIRVFGDDGTPR-LADNF 238 Query: 422 IHNLSGR 428 +H+ GR Sbjct: 239 MHDEEGR 245 >UniRef50_C2KAU4 Sigma-54-dependent transcriptional regulator n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=C2KAU4_9FLAO Length = 519 Score = 326 bits (835), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 158/312 (50%), Positives = 226/312 (72%), Gaps = 3/312 (0%) Query: 378 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMN 437 F I+G+SEAM + +Q+ VA S S V+I GETGTGKELIA+A+H LS + ++M+++N Sbjct: 202 FHGIVGQSEAMQFIFEQITQVAPSQSNVIIFGETGTGKELIAQAVHELSEFSGKKMIRIN 261 Query: 438 CAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVL 497 CAA+PA L+ES+LFGHE+G+FTGA+ QR G+FE A S++FLDE+G++PLELQ +LLRVL Sbjct: 262 CAAIPANLIESELFGHEKGSFTGATEQRKGKFEQAHNSTIFLDEIGELPLELQARLLRVL 321 Query: 498 QEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPE 557 QE+E ER+G NK I+ + R+I ATNR+L+K VA+ FR DLYYRLNVFPI LPPLRER E Sbjct: 322 QEKEIERIGGNKRIKVNARIITATNRNLEKEVAEGRFRLDLYYRLNVFPIELPPLRERKE 381 Query: 558 DIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVL 617 DIPLLA F K+ + G+ I+ ++ + W GN+RELEN++ER++L +G+++ Sbjct: 382 DIPLLADYFLEKLYPKTGKKINGFSQNVVKMMMANPWLGNIRELENMVERSMLTAKGDII 441 Query: 618 -QLSLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTT 676 ++ P ++ + E E EY I++++K+ NG + G GAA+ LGL TT Sbjct: 442 REMDFPKVINYQNTDQEVQVKTLQEFEKEY--ILKIIKKCNGRIFGEIGAAKLLGLPPTT 499 Query: 677 LLSRMKRLGIDK 688 L+S+M++LGI+K Sbjct: 500 LISKMQKLGIEK 511 >UniRef50_B8FJD2 Transcriptional regulator, NifA subfamily, Fis Family n=2 Tax=Bacteria RepID=B8FJD2_DESAA Length = 1038 Score = 324 bits (831), Expect = 6e-87, Method: Compositional matrix adjust. Identities = 181/402 (45%), Positives = 260/402 (64%), Gaps = 18/402 (4%) Query: 295 NQIQTLCL-LPLMSGDTMLGVLKLAQCEEKVFTT----TNLNLLRQIAERVAIAVDNALA 349 N++ C+ +P+ +T+LGVL + + ++F + +++ +L + + AIA+DNA Sbjct: 646 NKVVHSCICVPMKFRETVLGVLYV---DNRIFPSALKESDIRILDFFSSQAAIALDNARI 702 Query: 350 YQEIHRLKERLVDENLALTEQLNNVDSEFG---EIIGRSEAMYSVLKQVEMVAQSDSTVL 406 +++ L +L +E L EQ SEF E +G A+ VL V+ +A +DSTVL Sbjct: 703 HEQNRALIRKLEEEKRYLEEQ----QSEFQPPVEFVGECAAVRKVLNDVKKIAATDSTVL 758 Query: 407 ILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRI 466 ILGETG GKELI+ AIH S R + +++NC+ P GL+ S+LFGHE+GAFTGA +R+ Sbjct: 759 ILGETGVGKELISTAIHERSSRAGKPFIRVNCSMFPEGLIASELFGHEKGAFTGADKRRL 818 Query: 467 GRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLK 526 GRFELAD +LFLDE+GD+ E+Q +LLRVLQ +EFER+G +++D RL+AATNRDL+ Sbjct: 819 GRFELADGGTLFLDEIGDISHEVQVRLLRVLQNKEFERVGGRSTLRSDFRLLAATNRDLR 878 Query: 527 KMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETL 586 + V +FR DLYYRLNV + +PPLRER EDIPLL F + A+ LG+ ++ E L Sbjct: 879 EDVKTGKFREDLYYRLNVLSLKIPPLRERKEDIPLLVDYFLDRHAKNLGKPRGAVTPEDL 938 Query: 587 RTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGEDEY 646 L +WPGNVRELENVIER+ +L+ G +L +PD+ ++LE E+E Sbjct: 939 DKLVAYDWPGNVRELENVIERSAILSSG--ARLEIPDLFQSGASFALDREALSLE-ENER 995 Query: 647 QLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDK 688 + I+ LK+T G V GP GAA+ L + TL SR+K+LGI + Sbjct: 996 RHILWALKKTGGKVRGPGGAAELLEINHNTLFSRIKKLGIKR 1037 >UniRef50_A5G4X7 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Geobacter uraniireducens Rf4 RepID=A5G4X7_GEOUR Length = 726 Score = 323 bits (827), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 180/336 (53%), Positives = 230/336 (68%), Gaps = 9/336 (2%) Query: 352 EIHRLKERLVDENLAL-TEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGE 410 EI RLKE+L E L TE + + +E +IIG+S A+ VL+ VE VA +DSTVLI GE Sbjct: 388 EIQRLKEKLQLEAEYLQTEIICSHCNE--QIIGQSAALDKVLRLVEQVASTDSTVLICGE 445 Query: 411 TGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFE 470 TGTGKEL+ARAI LS R N+ +VK+NCA++PA L+ES+LFG E+GA+TGA ++ GRFE Sbjct: 446 TGTGKELVARAIQELSLRRNKPIVKVNCASLPAALVESELFGREKGAYTGALTRQAGRFE 505 Query: 471 LADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVA 530 +AD +++FLDE+ +M ELQ KLLRVLQE +FERLGS K I DVR+IAATNR+L + V Sbjct: 506 VADGATIFLDEISEMSPELQAKLLRVLQEGQFERLGSTKTIHVDVRVIAATNRNLAEEVK 565 Query: 531 DREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLS 590 FR DLYYRLNVF I +PPLRER EDIPLLA AF + ++G+ I+ I + L Sbjct: 566 KGTFREDLYYRLNVFQIVVPPLRERAEDIPLLAWAFVHEFNEKMGKKINRIAKSDMNALQ 625 Query: 591 NMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGEDEYQLIV 650 N WPGNVREL NVIE V+++ GN L + LP+ E P L E E Q I Sbjct: 626 NYHWPGNVRELRNVIEYGVIVSTGNGLHVRLPEGSGEEIARP------LLMDEVERQHIT 679 Query: 651 RVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 VL+ T + G GAA+ LG+ +TL SRM++LGI Sbjct: 680 GVLQRTGWRIKGENGAARILGMNPSTLYSRMQKLGI 715 >UniRef50_D2R1I6 Sigma 54 interacting domain protein n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R1I6_9PLAN Length = 539 Score = 321 bits (822), Expect = 7e-86, Method: Compositional matrix adjust. Identities = 185/403 (45%), Positives = 255/403 (63%), Gaps = 11/403 (2%) Query: 292 TW--GNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALA 349 TW +I + PL+ +LGVL L + + LR IA+ +A A+ NA A Sbjct: 136 TWISNERIASFAGHPLLHRGEVLGVLGLFARQSP--GESCFEWLRMIADHLAAAIANARA 193 Query: 350 YQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILG 409 EI LK+RL EN L E++ + S FG++IG+S ++ + +Q+E+VA +DS VLILG Sbjct: 194 LDEIDSLKKRLEQENEYLREEVQQITS-FGDLIGQSPSLQATTRQIELVAPTDSAVLILG 252 Query: 410 ETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRF 469 E+GTGKE++AR +H S R +R ++K+NCAA+P L ES+ FGH +G+FTGA R GRF Sbjct: 253 ESGTGKEVVARELHRRSRRADRPLIKVNCAAIPRELYESEFFGHAKGSFTGALRDRAGRF 312 Query: 470 ELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMV 529 ELAD+ +LFLDE+G++PL+LQ KLLRVLQE E ER+G + + DVR+IAATNR+L+ Sbjct: 313 ELADRGTLFLDEIGEIPLDLQAKLLRVLQEGELERIGEERTRRIDVRIIAATNRNLRTEA 372 Query: 530 ADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTL 589 FR DL+YRL+VFP+ LPPLR+R EDIPLLA+ + + +R+LGR + ++ L Sbjct: 373 EAGRFRQDLFYRLSVFPMELPPLRKRVEDIPLLAEHYLDRFSRQLGRPRPRLTLAHVQDL 432 Query: 590 SNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVL------PEPETPPAATVVALEGE 643 WPGNVREL++V+ERA ++ LQ P L EP +P A E Sbjct: 433 QRYPWPGNVRELQHVLERACIVATDGKLQFDFPKDQLKRREEPAEPSSPQHILTAAELRE 492 Query: 644 DEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 E I + L +NG + G GAA RL +K TTL SR+K LGI Sbjct: 493 LEASNIRKALAASNGKIYGKNGAASRLAMKPTTLASRIKALGI 535 >UniRef50_A4CKT3 Transcriptional regulator, NifA subfamily, Fis Family protein n=1 Tax=Robiginitalea biformata HTCC2501 RepID=A4CKT3_9FLAO Length = 791 Score = 317 bits (813), Expect = 9e-85, Method: Compositional matrix adjust. Identities = 173/412 (41%), Positives = 263/412 (63%), Gaps = 24/412 (5%) Query: 284 PYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIA 343 PY + F+ G I++ L +M V+ L N ++ E++ A Sbjct: 395 PYGILCFEHVGPGIRSWTAEDLEFASSMANVVSL---------MVESNERKKAEEQIRQA 445 Query: 344 -VDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSD 402 ++ + A +E+ L+ RL EN+ L +L+ + + E++ S+A+ VL +VE VA ++ Sbjct: 446 NLELSKANKELDTLRNRLEQENMYLRNELD-LAFNYQEMVYSSQAISQVLTEVEQVAATN 504 Query: 403 STVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGAS 462 +TVL+ GE+GTGKEL+ARAIHN+S R+ + M+K+NCAA+P LLES+LFGH++GAFTGA Sbjct: 505 ATVLLQGESGTGKELLARAIHNISPRSGKPMIKVNCAAIPGELLESELFGHKKGAFTGAV 564 Query: 463 AQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATN 522 + ++G+FELAD +LFLDE+G++PLE+QPKLLR LQE E E +G ++ + DVR+IAATN Sbjct: 565 SNKVGKFELADGGTLFLDEIGELPLEMQPKLLRFLQEGEIEVVGGTEVRKLDVRIIAATN 624 Query: 523 RDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIP 582 R LK+ V +FR DLY+R+NVFPI +PPLRER EDIP+L + F K R+ G+NI + Sbjct: 625 RYLKEEVEKGDFREDLYFRINVFPIEVPPLRERKEDIPILVEHFMDKFNRKYGKNISFVT 684 Query: 583 AETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEG 642 E + L EWPGN+RELEN++ERA +++RG L ++P E+ + + L Sbjct: 685 EEAMSQLKQYEWPGNIRELENLLERATIVSRGETL-------IIPGFESQSQKSKMPLRN 737 Query: 643 ED------EYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDK 688 + + I+ VL + + G GAA+ L ++ +TL RM++LGI++ Sbjct: 738 NNLSLTTVQRNHILHVLDMCDWKITGQGGAAELLDMRPSTLRDRMQKLGIER 789 >UniRef50_A0YEC8 Transcriptional regulatory protein n=2 Tax=Proteobacteria RepID=A0YEC8_9GAMM Length = 639 Score = 316 bits (810), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 178/367 (48%), Positives = 237/367 (64%), Gaps = 14/367 (3%) Query: 332 LLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGE--IIGRSEAMY 389 + R ++++ A A E+ LK+RL EN L E+ + S+F IIG S + Sbjct: 256 IFRDVSQKKAYKKALLEALAEVESLKDRLEMENAYLQEE---IKSKFNHHRIIGSSAPLQ 312 Query: 390 SVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESD 449 ++L+Q+++VA + +TVLI GE+GTGKEL+ARAIH SGR+ R ++++NCAA+P L ES+ Sbjct: 313 NILQQIDLVAPTKATVLITGESGTGKELLARAIHESSGRSGRSLIRVNCAAIPQDLFESE 372 Query: 450 LFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNK 509 FGH +GAFTGAS+ R GRFELAD S+FLDEVG++PL LQ KLLRVLQEQEFER+G Sbjct: 373 FFGHVKGAFTGASSDRPGRFELADGGSIFLDEVGEIPLHLQGKLLRVLQEQEFERVGEAI 432 Query: 510 IIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFK 569 DVR+I ATNRDLK+MVA+ FR DLY+RLN+FPI PLR+R +DIP L + F + Sbjct: 433 TRTVDVRIITATNRDLKQMVAEGLFREDLYFRLNIFPIESIPLRQRKDDIPQLTQHFLGQ 492 Query: 570 IARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQ----LSLPDIV 625 A R ++ IP + L +WPGNVRELENVIER V+L RGN+++ LS + Sbjct: 493 AAIRANKSDLRIPLHEIEKLKAYDWPGNVRELENVIERQVILIRGNIVRFNNLLSSDNNA 552 Query: 626 LPEPETPPAATVVALEGED-----EYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSR 680 + E + E E Q I+R L G V G GAA L +K TTL SR Sbjct: 553 IIEGAGADKDNKYEILTEPQLRQMEKQNIIRALHYCKGRVFGDGGAADLLSIKPTTLSSR 612 Query: 681 MKRLGID 687 +K+LGI+ Sbjct: 613 IKKLGIN 619 >UniRef50_A1AL12 Transcriptional regulator, Fis family n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A1AL12_PELPD Length = 687 Score = 315 bits (806), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 177/336 (52%), Positives = 229/336 (68%), Gaps = 9/336 (2%) Query: 352 EIHRLKERLVDENLALTEQLNNVDSEFG-EIIGRSEAMYSVLKQVEMVAQSDSTVLILGE 410 EI RLK++L E L ++ S F +I+G+SE + VL VE VA + STVL+ GE Sbjct: 347 EIARLKDKLELEADYLRSEVRA--SRFNDQIVGQSEPIQGVLAMVEQVAPTPSTVLVYGE 404 Query: 411 TGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFE 470 TGTGKEL+A+AIHN S R ++ MVK+NCA++P+ L+ES+LFG ERGA+TGA +++GRFE Sbjct: 405 TGTGKELVAQAIHNHSPRRDKLMVKVNCASLPSSLVESELFGRERGAYTGALTRQMGRFE 464 Query: 471 LADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVA 530 LAD SSLFLDE+ ++ LELQ KLLRVLQE EFERLGS + I+ DVR+IAATNR+L + V Sbjct: 465 LADGSSLFLDEIAELSLELQSKLLRVLQEGEFERLGSPRTIKVDVRVIAATNRNLLEEVR 524 Query: 531 DREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLS 590 FR DLYYRL+VFPI +PPLRER EDIPLLA F ++G+ I I + L Sbjct: 525 KGRFREDLYYRLSVFPIVVPPLRERREDIPLLAWEFVRDFNEKMGKRILRIAKRDMLALQ 584 Query: 591 NMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGEDEYQLIV 650 + WPGNVREL NVIE AV+++ G+ L++ LP+ ++ PP T + E E I Sbjct: 585 SYSWPGNVRELRNVIEYAVIVSPGDELKIRLPENIV---NAPPQMTTLE---EMERHYIQ 638 Query: 651 RVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 VL+ T + G GAA L L TL SRMK+LGI Sbjct: 639 DVLRRTEWRIKGEGGAAHILDLNPATLYSRMKKLGI 674 >UniRef50_A1ALJ3 Sigma-54 factor, interaction domain-containing protein n=5 Tax=Desulfuromonadales RepID=A1ALJ3_PELPD Length = 517 Score = 314 bits (804), Expect = 9e-84, Method: Compositional matrix adjust. Identities = 176/395 (44%), Positives = 253/395 (64%), Gaps = 16/395 (4%) Query: 302 LLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLV 361 LLPL SG+ MLG L L F ++ LL +A+ IA+ NALA++++ R ++ L+ Sbjct: 116 LLPLWSGEGMLGWLTLYAWGAGRFDAGHVALLATVADPFVIALANALAHEKLLRYRDNLI 175 Query: 362 DENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARA 421 D+N L+++L + EI+G + + V++ V VA ++TVL+LGETGTGKELIA A Sbjct: 176 DDNRFLSKELFTQGGD--EIVGANLGLRHVMEMVRQVAPLNNTVLLLGETGTGKELIANA 233 Query: 422 IHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDE 481 IH+ S R + ++K+NC A+P L++S+LFGHE+GAFTGA +R GRFE AD ++FLDE Sbjct: 234 IHSASPRKDGPLIKVNCGAIPEQLIDSELFGHEKGAFTGAVTERRGRFERADGGTIFLDE 293 Query: 482 VGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYR 541 +G++PL+ Q +LLRVLQ E +R+G ++ I D+R+IAAT+R+L+ M+A+ FR DL++R Sbjct: 294 IGELPLQAQVRLLRVLQNHEIDRVGGSRPIPVDIRVIAATHRNLESMIAENRFREDLWFR 353 Query: 542 LNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNI--DSIPAETLRTLSNMEWPGNVR 599 LNVFP+ +PPLR+R EDIP L + F + R LG D P +R L WPGNVR Sbjct: 354 LNVFPLFIPPLRQRREDIPGLTRHFISQKCRELGMAAMPDIAPGALVR-LMEYAWPGNVR 412 Query: 600 ELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGEDE--------YQLIVR 651 ELEN++ER ++L RG LQ D ++P A G +E + + R Sbjct: 413 ELENLVERELILHRGGTLQF---DALMPAARRGNAPVQREAPGVEEGLELDQAISRHLRR 469 Query: 652 VLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 VL T G + G GAA+ LG+K +TL R+ RLGI Sbjct: 470 VLDLTGGRIHGRGGAAELLGVKPSTLRWRLDRLGI 504 >UniRef50_C6VVC1 Sigma54 specific transcriptional regulator, Fis family n=3 Tax=Sphingobacteriales RepID=C6VVC1_DYAFD Length = 650 Score = 313 bits (803), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 162/320 (50%), Positives = 218/320 (68%), Gaps = 15/320 (4%) Query: 378 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMN 437 F ++G+S M ++L + VA SD++VLI GE+GTGKE +A IH LS R ++ VK+N Sbjct: 335 FDSMVGQSHLMLNILDLISQVAPSDTSVLITGESGTGKEHVADTIHQLSPRKSKPFVKVN 394 Query: 438 CAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVL 497 CAA+P L+ES+LFGHE+GAFTGA+ +RIGRFE AD ++FLDE+GDMPLE+Q KLLRVL Sbjct: 395 CAALPINLIESELFGHEKGAFTGATERRIGRFEQADGGTIFLDEIGDMPLEVQVKLLRVL 454 Query: 498 QEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPE 557 Q++E ER+G + I+ ++R+I ATNR+L++ +A+ +FR D+YYRLNVFPI +P LRER E Sbjct: 455 QQREIERVGGTQPIKINIRVITATNRNLERAIAEGKFRLDIYYRLNVFPIAMPALRERTE 514 Query: 558 DIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVL 617 DI L F R+ G+NI I L L + WPGN+RELENVIER+VLL +GN Sbjct: 515 DIAPLVHHFIGYFGRKTGKNISGISDRALAMLMDYGWPGNIRELENVIERSVLLAKGN-- 572 Query: 618 QLSLPDIVLPEPETPPAATVVALEG--------EDEYQLIVRVLKETNGVVAGPKGAAQR 669 S+ + LP PA +A G E+E I+ VLK G ++G GAA+ Sbjct: 573 --SIDTVYLP---AHPAVEGIAKAGPPVLKNIFENERDHIISVLKACEGRISGENGAAKI 627 Query: 670 LGLKRTTLLSRMKRLGIDKS 689 L + TTL S+MK+LGI KS Sbjct: 628 LAIPPTTLSSKMKKLGIKKS 647 >UniRef50_B8FB78 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FB78_DESAA Length = 1036 Score = 313 bits (803), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 183/412 (44%), Positives = 262/412 (63%), Gaps = 9/412 (2%) Query: 279 RDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAE 338 R + AP E + ++C + G T+ + + F ++ LL A Sbjct: 631 RKESAPPEEWSAGSSEAARSSICAPIIFKGKTLGVLYHDNRLLNSAFKESDFELLSFFAA 690 Query: 339 RVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMV 398 + A A+DNA A +EI RLK R + + + + + + E+IG+S+A+ +L +E V Sbjct: 691 QAAAALDNANAQEEIERLK-RAMAQGGRIQSRPSFSRENYKEVIGKSQAVRKMLHLIEQV 749 Query: 399 AQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAF 458 A++ S VLILGETG GKEL A A+H S R + VK NC+A+ L+ S+LFGHE+GAF Sbjct: 750 AKTGSNVLILGETGVGKELAANAVHYHSKRRGKAFVKANCSALTETLINSELFGHEKGAF 809 Query: 459 TGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLI 518 TGAS++RIGRFELADK ++FLDE+GD+PL++Q LLRVLQ EFER+G N+ I++D RLI Sbjct: 810 TGASSRRIGRFELADKGTIFLDEIGDLPLDVQANLLRVLQSSEFERVGGNETIRSDFRLI 869 Query: 519 AATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNI 578 AATNRDL+++ AD++FR DLYYRLNVFPI +PPLR+R EDIPLLA+ F A+++ + Sbjct: 870 AATNRDLERLAADKKFRQDLYYRLNVFPILVPPLRDRKEDIPLLAEQFIRGFAQKMQIEV 929 Query: 579 DSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAA--T 636 I E + L WPGN+REL NVIER ++L+ G + + PD+ E +T + Sbjct: 930 KKISREEMNKLLKYHWPGNIRELANVIERGMILSSGPL--FTAPDL---EGQTDGHSLHR 984 Query: 637 VVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDK 688 +LE E+E I+ L++ N V GP G A+ L + +TL +RMK+LGI + Sbjct: 985 PHSLE-ENERSHILWALEQKNWKVRGPGGVAEFLDINPSTLAARMKKLGIKR 1035 >UniRef50_C7LQX0 Sigma54 specific transcriptional regulator with PAS/PAC sensor, Fis family n=2 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LQX0_DESBD Length = 647 Score = 313 bits (802), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 178/357 (49%), Positives = 237/357 (66%), Gaps = 7/357 (1%) Query: 330 LNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMY 389 L + + ER + + QEI RL +L +EN L ++ + E + E M Sbjct: 293 LGITLDVTERQQMELKLRAQLQEIERLHGQLEEENSYLRNEVMSC-RERKNLHNFGERMQ 351 Query: 390 SVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESD 449 VL +VE VA ++ TVLI GETGTGKE++A+AIH S R++R M+ +NCAA+PA L+ES+ Sbjct: 352 EVLIKVEQVASTECTVLIEGETGTGKEVLAQAIHQSSPRSHRMMITVNCAALPAALVESE 411 Query: 450 LFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNK 509 LFG E+GAFTGA ++++GRFELA S+LFLDE+G+MPLE Q KLLRVLQE EFERLGS K Sbjct: 412 LFGREKGAFTGALSRQVGRFELAQGSTLFLDEIGEMPLETQAKLLRVLQEGEFERLGSPK 471 Query: 510 IIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFK 569 I+ DVR++AA+NRDL V+ FR DLYYRLNVFPI LPPLRER EDIP L F + Sbjct: 472 TIKVDVRVLAASNRDLAVEVSQGRFRRDLYYRLNVFPILLPPLRERREDIPQLVWEFISE 531 Query: 570 IARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEP 629 R+G+ I I + L WPGN+REL NVIE A+++T+G+ L+L+ +++ P Sbjct: 532 FGDRMGKKIRRIAKNDMERLKVHAWPGNIRELRNVIEHAMIVTKGDTLELA--HLLVNAP 589 Query: 630 ETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 + P VV LE E E + I R+LK V G GAA+ L + +TL SRM++LGI Sbjct: 590 QDEP---VVTLE-EMERRHIQRILKVAGNRVRGSGGAAELLAINPSTLNSRMRKLGI 642 >UniRef50_C5S9Z4 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5S9Z4_CHRVI Length = 552 Score = 312 bits (799), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 180/396 (45%), Positives = 252/396 (63%), Gaps = 14/396 (3%) Query: 303 LPLMSGDTMLGVLKLAQCEEKVFTTTNLNL-LRQIAERVAIAVDN-------ALAYQEIH 354 +PL G ++GV+ + +L + L+ + E A A+ A A EI Sbjct: 163 IPLRVGGRVMGVIAFSAFHRTRAWPEDLIVRLKIVGEVFAQALARSRRETELAAALAEIT 222 Query: 355 RLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTG 414 RLKERL EN L + ++ + RS VL ++ A +++TVL+LGETGTG Sbjct: 223 RLKERLEAENSYLRQSGCARPAQM--LASRSPRFNQVLDEIAQAAPTNATVLLLGETGTG 280 Query: 415 KELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADK 474 KE++A +H LS R R ++K+NCAA+PA L+E++LFG E+GA+TGA A++ GRFELAD Sbjct: 281 KEVLADTLHALSQRRERPLIKVNCAALPASLIETELFGREKGAYTGALARQPGRFELADG 340 Query: 475 SSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREF 534 SLFLDEVG++PLELQ KLLRVLQ+ FER+G + I+ DVRLIAATNR+L + V F Sbjct: 341 GSLFLDEVGELPLELQAKLLRVLQDGVFERVGGTRTIRVDVRLIAATNRNLARAVQAGGF 400 Query: 535 RSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEW 594 R DL+YRLNVFP+ LPPLRER EDIP LA F + +G+ I+ + ++++ L + W Sbjct: 401 REDLFYRLNVFPVTLPPLRERREDIPWLAWEFIKHFSDSMGKPIEHVAEDSMQALLDYHW 460 Query: 595 PGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLK 654 PGNVREL N+IERA++L RG L ++L T+ ++E I+++L+ Sbjct: 461 PGNVRELRNLIERAMILARGPTLHVALECAPATTTRPTATDTLA----DNERAHILQILE 516 Query: 655 ETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSA 690 +T+ + G GAA+RLGLK TTL SRMKRLG+ +S Sbjct: 517 QTHWRIRGAGGAAERLGLKPTTLESRMKRLGLSRSG 552 >UniRef50_B9XM81 Sigma54 specific transcriptional regulator with PAS/PAC sensor, Fis family n=1 Tax=bacterium Ellin514 RepID=B9XM81_9BACT Length = 501 Score = 311 bits (797), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 168/332 (50%), Positives = 223/332 (67%), Gaps = 15/332 (4%) Query: 371 LNNVDSE-FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRN 429 L+ + SE FG II S A+ VL+Q+E+VA + + VLILGE+GTGKEL+ARAIH+LS R Sbjct: 169 LDEIRSERFGAIIASSPALKKVLQQIEVVAPTQANVLILGESGTGKELVARAIHDLSERK 228 Query: 430 NRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLEL 489 + +V++NCA++P L ES+ FGH RGAFTGA R+GRFELA+ SLFLDE+G++PL+L Sbjct: 229 GKPLVRVNCASIPKELFESEFFGHVRGAFTGAIKDRVGRFELANGGSLFLDEIGEIPLDL 288 Query: 490 QPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHL 549 Q KLLRVLQE +FER+G ++ +VR+IAATNRDL FR DLYYRL+VFPI + Sbjct: 289 QSKLLRVLQEGQFERVGEDRTRTVNVRIIAATNRDLLTEAKAGRFRLDLYYRLSVFPIEI 348 Query: 550 PPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAV 609 P LRERPEDI LA+ F + A RLG + +R L +WPGNVREL+NV+ERAV Sbjct: 349 PALRERPEDIGPLAEHFVKQSANRLGVTRPRLTKADVRELEGYDWPGNVRELQNVVERAV 408 Query: 610 LLTRGNVLQLSLPDIVLPEPETPPAATVVALEG------------EDEYQLIVRVLKETN 657 +L R L+ L + E PP+A V A +G + E Q+I+ LK+ Sbjct: 409 ILARSGRLKFELGNN--SERPFPPSARVPAPDGSIDHQPSLGELKQQEKQVILNALKQAQ 466 Query: 658 GVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKS 689 G + G +GAA L +K TTL SR++R G+ K+ Sbjct: 467 GRIYGEEGAAAILSMKPTTLASRIQRYGLKKA 498 >UniRef50_Q1DC06 Sigma-54 dependent transcriptional regulator, Fis family n=3 Tax=Proteobacteria RepID=Q1DC06_MYXXD Length = 531 Score = 310 bits (795), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 186/429 (43%), Positives = 255/429 (59%), Gaps = 25/429 (5%) Query: 277 HERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQI 336 H D P++ +L G+ + ++PL +GD GVL L + E + + ++L+ Sbjct: 102 HAHGDGDPFDGVLDLPPGH---SCMVVPLCAGDRCYGVLSLDRAECETYPQPVVDLVEVY 158 Query: 337 AERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVE 396 + +A A+ +A RL R E+ L E DSE +S M + ++ Sbjct: 159 GQMLATAIQSAEQRATFERL-HRQDHEHAKLLEAQLGGDSEGILETSKSPVMRDLARRAR 217 Query: 397 MVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERG 456 VA++D+ VLI GETGTGKE +ARAIH S R ++ V +NCAA+PAGLLES+LFGH +G Sbjct: 218 QVAETDTPVLITGETGTGKERLARAIHRWSARADQPFVTLNCAAIPAGLLESELFGHVKG 277 Query: 457 AFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVR 516 AFTGA+ R GRF++A +L LDEVG++P +LQ KLLR LQE+ FE +GS+K ++ DVR Sbjct: 278 AFTGATKDRAGRFQMAHGGTLLLDEVGELPFDLQAKLLRALQEKTFEPVGSDKTVRADVR 337 Query: 517 LIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGR 576 ++AAT+ DL++ +A + FR DLYYRL+VFP+ LPPLRER ED+P L + A R GR Sbjct: 338 ILAATHVDLQQAIAQKRFREDLYYRLSVFPLRLPPLRERREDLPQLCAFLLEEQANRTGR 397 Query: 577 NIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDI---------VLP 627 + E L L EWPGN+REL N +ERA +LTRG L D+ LP Sbjct: 398 RGMRVTPEGLVRLEAYEWPGNLRELANALERATILTRGTELGPESFDVPTRGAAVVAALP 457 Query: 628 E--------PETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLS 679 E P+ P T+ A++ E I+RVL T G V G GAA LGLK +TL S Sbjct: 458 EEPAPAAGGPKRGPVLTLAAVQREH----IMRVLTLTRGRVYGANGAAALLGLKPSTLQS 513 Query: 680 RMKRLGIDK 688 RMK+LGI + Sbjct: 514 RMKKLGIAR 522 >UniRef50_Q2LPT8 Transcriptional regulator, sigma-54-dependent n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LPT8_SYNAS Length = 645 Score = 310 bits (794), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 166/346 (47%), Positives = 236/346 (68%), Gaps = 7/346 (2%) Query: 349 AYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLIL 408 AY+EI LKE+L EN L E++ + GEIIG SEA+ + + + VA++ TVL+ Sbjct: 297 AYEEIQALKEKLEAENTYLREEVG-LQHGAGEIIGDSEAIKNTMHRALQVARTSVTVLLT 355 Query: 409 GETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGR 468 GETGTGK + A +H SGR ++ V +NCA +P L+ES+LFG E+GAFTG++A++IGR Sbjct: 356 GETGTGKGIFAHFLHQNSGRADKPFVHVNCAGLPHNLIESELFGREKGAFTGSTARQIGR 415 Query: 469 FELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKM 528 FELA ++FLDE+G++PLELQ KLLRV+++ +FERLGS I+ D R+I +TNR+L+ Sbjct: 416 FELAHGGTIFLDEIGELPLELQAKLLRVIEDGKFERLGSPHSIKVDARIITSTNRNLEDE 475 Query: 529 VADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRT 588 +++ FR DL++RL+VFPI +PPLRER DIPLL + FT K ++ +NI IPA+T+++ Sbjct: 476 ISEGRFREDLFFRLSVFPIIIPPLRERKADIPLLVEFFTHKCSKVHRKNIRHIPAQTMKS 535 Query: 589 LSNMEWPGNVRELENVIERAVLLTRGNVL----QLSLPDIVLPEPETPPAATVVALEGED 644 L N WPGNVREL NVIERAV++T+G L QLS I + + A +G + Sbjct: 536 LENYGWPGNVRELMNVIERAVIVTQGTELQLAGQLSAHSIRSRKERGIEGSEKPAFKGLN 595 Query: 645 --EYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDK 688 E + I+ L+E + GP GAAQRL + +TL +RMK+L I + Sbjct: 596 GVERRHILETLQEAGWKIEGPGGAAQRLEMNPSTLRTRMKKLQIKR 641 >UniRef50_Q2LRC8 Transcriptional regulator containing sigma 54 interaction domain n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LRC8_SYNAS Length = 697 Score = 309 bits (791), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 169/349 (48%), Positives = 238/349 (68%), Gaps = 10/349 (2%) Query: 344 VDNALAYQ--EIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQS 401 ++N L Q EI++LK +L EN+ L ++ + FG IIG S+ + VL +V+ VA + Sbjct: 354 MENELRKQLAEINKLKLQLEKENIYLRNEIKT-ERGFGGIIGHSDTLRYVLFRVQQVAPT 412 Query: 402 DSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGA 461 D+TVLILGETG GK ++A AIH +S R ++ MV +NCAA+P+ L+ES+LFG E+GAFTGA Sbjct: 413 DATVLILGETGVGKGMVAHAIHEMSARKDKTMVTVNCAALPSNLIESELFGREKGAFTGA 472 Query: 462 SAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAAT 521 A++ GRFE+AD ++FLDE+G++PLELQ KLLRVLQ+ EFERLGS + ++ DVR+IA+T Sbjct: 473 YARQAGRFEVADGGTIFLDEIGELPLELQTKLLRVLQDGEFERLGSPRTVKVDVRVIAST 532 Query: 522 NRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSI 581 +RDLK + + FR DLYYRLN FP+ LPPLR R EDIP LA+ F K +R+L + +S+ Sbjct: 533 SRDLKVEMHNGRFREDLYYRLNTFPVTLPPLRMRVEDIPELARHFIDKYSRKLNKQFESL 592 Query: 582 PAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALE 641 +T++ L WPGNVRELE+VIER V+ + V QL V + P ++ Sbjct: 593 SKDTMQMLQAYAWPGNVRELEHVIERGVITSPEPVFQL-----VEQLEQGPGMEADKPIK 647 Query: 642 GEDEY--QLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDK 688 G + + I++VL +T + G GAA LGL +TL R+K+LGI + Sbjct: 648 GFETMAREHILQVLHKTGWKIEGKGGAAAILGLNPSTLRFRLKKLGIKR 696 >UniRef50_Q1N5U9 Sigma-54 dependent transcriptional regulator/sensory box protein n=1 Tax=Bermanella marisrubri RepID=Q1N5U9_9GAMM Length = 479 Score = 309 bits (791), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 166/357 (46%), Positives = 232/357 (64%), Gaps = 6/357 (1%) Query: 332 LLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQL-NNVDSEFGEIIGRSEAMYS 390 + + I+ER I A E LKE+L EN L ++ +N S+ IIG+S A+ Sbjct: 125 VFKNISERKRIESALQKALTENRFLKEKLEAENSYLQSEIESNYQSD---IIGQSPAIEH 181 Query: 391 VLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDL 450 + Q+ + A + + +LI GE+GTGKEL+ARAIH S R + +VK+NC A+P GL++S+L Sbjct: 182 LQTQISLSAPTSANILIQGESGTGKELVARAIHQQSERQAQTLVKLNCGAIPEGLVDSEL 241 Query: 451 FGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKI 510 FGHE+GAFTGA QRIGRFELA+K +LFLDEV ++PL+ Q KLLRVLQE EFER+G NK Sbjct: 242 FGHEKGAFTGAVKQRIGRFELANKGTLFLDEVSELPLDAQVKLLRVLQEGEFERVGGNKT 301 Query: 511 IQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKI 570 I+ DVR+IAA+N++L++ V D FR DLYYRLNVF + +PPLRER D+P+L+ F K Sbjct: 302 IRVDVRIIAASNKNLEQAVHDGSFRLDLYYRLNVFSVQVPPLRERKSDLPILSHFFAKKA 361 Query: 571 ARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLS-LPDIVLPEP 629 +G++ + +L+ +S+ +WPGN+REL N IE +L G + + + Sbjct: 362 CADMGKSFKGLHMPSLKWMSHYQWPGNIRELSNWIEHNAILHTGGLFHIHPMAHARHDHS 421 Query: 630 ETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 ++V+L E E Q I + L NG +AG GAAQ L L +TL S+MK+LGI Sbjct: 422 VEHDNESIVSL-AEAEKQHIQKALLHCNGRIAGANGAAQLLQLPASTLRSKMKKLGI 477 >UniRef50_Q2IQU1 Transcriptional regulator, NifA subfamily, Fis family n=4 Tax=Anaeromyxobacter RepID=Q2IQU1_ANADE Length = 562 Score = 307 bits (787), Expect = 8e-82, Method: Compositional matrix adjust. Identities = 182/394 (46%), Positives = 244/394 (61%), Gaps = 9/394 (2%) Query: 299 TLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKE 358 +L PL+ + +LG L +A + + RQ+A VAIA+ N+L +E+ RL Sbjct: 163 SLVSFPLVFENELLGTLDIAHPPAEGLLDCCFEVARQVAHLVAIALHNSLMVEEVQRLNR 222 Query: 359 RLVDENLALTEQLNNV--DSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKE 416 L EN L E++ + DS + + SE M +V+++V +VA S +TVL+ GETGTGKE Sbjct: 223 LLGRENALLKEEIRQIKRDSRY---VAESEGMRAVVERVRLVAPSTTTVLVRGETGTGKE 279 Query: 417 LIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSS 476 +AR +H S R N V N A+P GL+ES+LFGHE+GAFTGA+ +R GRFE AD + Sbjct: 280 GLARMVHEFSPRFNAPFVAANLGAIPEGLIESELFGHEKGAFTGATRRRAGRFEQADGGT 339 Query: 477 LFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRS 536 LFLDEVGD P +Q +LLRVLQE+ ER+G + ++ DVR+IAATNR+L++MVA FR+ Sbjct: 340 LFLDEVGDAPPSVQVRLLRVLQERVVERVGGTEPVKVDVRVIAATNRNLEEMVARGTFRA 399 Query: 537 DLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPG 596 DLYYRL VFPI LPPLRER ED+ L F K A + R + + R L WPG Sbjct: 400 DLYYRLAVFPIELPPLRERREDVRPLGTYFLAKQAALMHRRPPRVGEDVWRALEAYGWPG 459 Query: 597 NVRELENVIERAVLLTRGNVLQL-SLPDIVLPEPETPPAATVVALEG--EDEY-QLIVRV 652 NVRELEN ++RA++L+ G L L +LP AA A G +DE +LI R Sbjct: 460 NVRELENFLQRALILSPGQDLSLPALPTSSALASPAAAAAAEPAPPGRFDDEVRELIERA 519 Query: 653 LKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 L+ G V GP GAA LGL+ TTL +MK+ G+ Sbjct: 520 LEHAGGRVYGPGGAAALLGLRPTTLQGKMKKYGV 553 >UniRef50_B8FLD5 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FLD5_DESAA Length = 1035 Score = 307 bits (787), Expect = 9e-82, Method: Compositional matrix adjust. Identities = 176/397 (44%), Positives = 248/397 (62%), Gaps = 13/397 (3%) Query: 297 IQTLCLLPLMSGDTMLGVLKL-AQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHR 355 IQ+ +PL D ++GVL + F +L++L + AIA+DNA AY +I R Sbjct: 645 IQSKICVPLCLHDQVVGVLYHDNRLLASAFREEDLDVLSYFSALAAIALDNARAYDQIRR 704 Query: 356 LKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGK 415 +L E E+ + +F EI+G S A+ VL ++E VA +++TVLI GETG GK Sbjct: 705 WNIKLSREK-QYYEEAHLSYLQFDEIVGHSPAINEVLSKIEQVANTETTVLITGETGVGK 763 Query: 416 ELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKS 475 EL+ARAI S R + + + +A+P L+ S+L GHE+GAFTGA+ ++ GR ELAD Sbjct: 764 ELVARAIQKHSSRAQQPFIGVQLSALPKDLMASELLGHEKGAFTGATHRQAGRLELADGG 823 Query: 476 SLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFR 535 +LFLDE+GD+ ++Q +LLRVLQ ++FER+G K + +D RLIAATNR+L+ +V D FR Sbjct: 824 TLFLDEIGDISHDIQIRLLRVLQTRQFERVGGMKTLSSDFRLIAATNRELESLVRDGRFR 883 Query: 536 SDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWP 595 +DLYYRLNVFPI++PPLR+R EDIPLLA F A +L + + I + L +WP Sbjct: 884 ADLYYRLNVFPIYVPPLRDRREDIPLLAMHFLKLHAAKLNKQVMRISDREMDMLKEYDWP 943 Query: 596 GNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETP--PAATV--VALEGEDEYQLIVR 651 GNVREL+NV+ER V+L+ D +PE ++ P TV A E+E I+R Sbjct: 944 GNVRELKNVVERGVILSTNR-------DFRMPELQSGDCPPLTVGDTATLAENERSHILR 996 Query: 652 VLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDK 688 +LK T VAG GAA+ L + +TL RM +LGI + Sbjct: 997 ILKRTGWKVAGASGAAKILDIPPSTLSFRMNKLGIKR 1033 >UniRef50_A6EHB3 Sigma-54-dependent transcriptional regulator n=1 Tax=Pedobacter sp. BAL39 RepID=A6EHB3_9SPHI Length = 664 Score = 307 bits (786), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 169/369 (45%), Positives = 236/369 (63%), Gaps = 25/369 (6%) Query: 330 LNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMY 389 L L+ IA ++ +A++N QE+ LT Q + ++ F EI+G S M Sbjct: 307 LELIGAIAAQLTLALNNLRYRQELAAGTAFF-----PLTAQ-DRLEYAFPEIVGGSPQMQ 360 Query: 390 SVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESD 449 V + VA S +TVLILGETG GKELIA AIH S R R+MV++NCAA+PA L+ES+ Sbjct: 361 EVFNLMGQVAPSTATVLILGETGVGKELIAGAIHQASDRAERQMVRINCAAIPANLIESE 420 Query: 450 LFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNK 509 LFGHE+G+FTGA+ +R G+FELAD+S++FLDE+G++ L+LQ KLLRVLQE+EFER+G + Sbjct: 421 LFGHEKGSFTGATDRRTGKFELADQSTIFLDEIGELSLDLQVKLLRVLQEKEFERIGGSG 480 Query: 510 IIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFK 569 I DVR+IAATNR+L V FR DLYYRLNVFPI LP LR+R DIPLLA F + Sbjct: 481 TISVDVRVIAATNRNLLDEVEAGRFRMDLYYRLNVFPISLPSLRDRRADIPLLANFFLER 540 Query: 570 IARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEP 629 + G+ I + + + WPGN+RELE++IER V+LT G +++ + Sbjct: 541 YKMKSGKKISGFSQKVMSAMMKYRWPGNIRELEHLIERQVILTEGTLIR---------DL 591 Query: 630 ETPPAATVVALEGEDEYQL----------IVRVLKETNGVVAGPKGAAQRLGLKRTTLLS 679 + P A V+A +G + ++ I VL+ NG ++G GAA+ LG+ TTL S Sbjct: 592 DIPAAHQVMATDGSGQTEIKTIAQNERDHIFSVLRLCNGKISGKNGAAKLLGVPATTLNS 651 Query: 680 RMKRLGIDK 688 ++K+LG+ + Sbjct: 652 KIKKLGLSR 660 >UniRef50_C8X5B4 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X5B4_DESRD Length = 522 Score = 305 bits (780), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 190/509 (37%), Positives = 284/509 (55%), Gaps = 17/509 (3%) Query: 187 FRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQ 246 + L+ I NA++ + + L ++ EI+ + D SI L H L+ +++ Sbjct: 20 YETLLRINNAIVQQTTRESLFQALSNEIYQLIEYDRFSINLYDHELRSLSYFAS--AKGV 77 Query: 247 HPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQT----LCL 302 + + E G + + V ++KE L+I D+ + F N I+ Sbjct: 78 SLGGKMTRPLEKGLIAQTVIRTKEPLII-----PDVK--NQSYFSNMNNMIEAGLNVTMG 130 Query: 303 LPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVD 362 PL+ DT+LG L + + ++ +VAIAV N LA+ + RL E L + Sbjct: 131 YPLIVRDTVLGSLHFSFKNRPDNLDEVNSFFEDLSPQVAIAVYNILAHNRLKRLNESLKN 190 Query: 363 ENLALTEQLN-NVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARA 421 E L ++ + + D E +SE+M V++QV+ VA SD+ VLI GETGTGKE IA Sbjct: 191 EKKFLKKEAHGSFDPE--NFFYKSESMSDVMQQVKNVAASDAPVLITGETGTGKEYIAHC 248 Query: 422 IHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDE 481 IH+ S R++ +VK+NC A+ + L ES+LFGH +GAFTGAS QRIGRFE+A+ ++FLDE Sbjct: 249 IHHTSLRSDALLVKVNCPALASSLFESELFGHTKGAFTGASQQRIGRFEMANNGTIFLDE 308 Query: 482 VGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYR 541 + ++P+ Q K+L VLQ++ FER+G ++ I D R++AATN+DL + + FRSDLYYR Sbjct: 309 IAELPMPQQAKILHVLQDRCFERVGESRSISADFRIVAATNKDLLHAIHNESFRSDLYYR 368 Query: 542 LNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVREL 601 LN IH+P LRERPEDIP+L + +I++RL R + L +L WPGNVREL Sbjct: 369 LNTAQIHIPSLRERPEDIPVLVINLSDQISKRLHRPSPKYSDKVLESLCQYPWPGNVREL 428 Query: 602 ENVIERAVLLTRGNVLQLS-LPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVV 660 +N + R L ++LS + + E + E E Q IV L+ GV+ Sbjct: 429 KNFVHRMFLQRSAENVKLSDVKSYLGNSQEIEYNDNNILPMHEMEKQHIVNALRICKGVL 488 Query: 661 AGPKGAAQRLGLKRTTLLSRMKRLGIDKS 689 +G GAA L +KR+TL R+KR I+ S Sbjct: 489 SGENGAASLLQMKRSTLQYRLKRHNINPS 517 >UniRef50_C7PBZ0 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Sphingobacteriales RepID=C7PBZ0_CHIPD Length = 481 Score = 304 bits (778), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 163/312 (52%), Positives = 215/312 (68%), Gaps = 1/312 (0%) Query: 378 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMN 437 F IIG S M V + + VA D++VL+LGETGTGKE +A IH+LS R + VK+N Sbjct: 166 FEGIIGSSIPMQRVFELIRQVAPLDTSVLVLGETGTGKEGVANCIHHLSPRKAKPFVKVN 225 Query: 438 CAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVL 497 CAA+P L+ES+LFGHE+GAFTGA +RIG+FE AD ++FLDE+GDMP +LQ KLLRVL Sbjct: 226 CAALPTHLIESELFGHEKGAFTGALEKRIGKFERADGGTIFLDEIGDMPADLQVKLLRVL 285 Query: 498 QEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPE 557 QE+E ER+G N I+ +VR+IAATNR+L+K +A+ FR DLYYRL+VFPI L LRER + Sbjct: 286 QEKEIERIGGNGPIKVNVRIIAATNRNLEKEIAEGRFRLDLYYRLHVFPIMLSALRERRD 345 Query: 558 DIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVL 617 DIPLL F A G+ + I LR L + WPGNVREL+N+IER+VLL+R +++ Sbjct: 346 DIPLLIAHFIRLYASATGKGVSDIAPAALRQLMDYAWPGNVRELQNLIERSVLLSRESII 405 Query: 618 -QLSLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTT 676 ++ LP V E T + E E + I+ VLK+ N ++GP GAA+ L L +T Sbjct: 406 REVILPVSVKKETTVVSTETDIKTIVELEREHILTVLKKCNHKISGPGGAAELLNLPPST 465 Query: 677 LLSRMKRLGIDK 688 L S+MK+LGI K Sbjct: 466 LASKMKKLGIVK 477 >UniRef50_D0LFQ8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LFQ8_HALO1 Length = 515 Score = 303 bits (777), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 180/398 (45%), Positives = 240/398 (60%), Gaps = 23/398 (5%) Query: 309 DTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALT 368 D ++ + L Q V LR I + A++ +E RL +L + L Sbjct: 90 DVLVDAINLGQIYRYVTKPWEAKELRGI---LTHALERYALLRENQRLMAQLREYTGYLN 146 Query: 369 EQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGR 428 ++++ +FG IIG S A+ VL +VE VA ++STVL+ GETGTGKEL+A AIH S R Sbjct: 147 QEIHGA-FDFGNIIGDSAALGEVLSKVEQVAPTNSTVLLRGETGTGKELVAHAIHINSSR 205 Query: 429 NNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLE 488 N+ V++NCAA+ G+LES+LFGHE+GAFTGA AQR GRFELAD +LFLDE GD+P+E Sbjct: 206 ENQPFVRVNCAALAPGVLESELFGHEKGAFTGAVAQRPGRFELADGGTLFLDECGDLPME 265 Query: 489 LQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIH 548 +Q KLLR LQE+EFER+G + I+ DVR+I+ATNRDL+ M+ FR DLYYRLNVFPIH Sbjct: 266 VQIKLLRALQEREFERVGGTQTIKVDVRVISATNRDLEAMIEAGSFREDLYYRLNVFPIH 325 Query: 549 LPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERA 608 LPPLR+R ED+P L F K AR + L L + WPGNVRELEN+IERA Sbjct: 326 LPPLRDRLEDLPALVAHFIAKFARSGMTRTPGVRGAALDKLRSYTWPGNVRELENIIERA 385 Query: 609 VLLTRGNVLQLSLPDI------VLPEPETPPAATVVA-----LEGEDEYQLIVRVL-KET 656 ++L RG L D P TP + A L G++ L R+L E Sbjct: 386 MILARGRELDADHLDFGRRAQNATPVSGTPSVISETASHSPPLIGDESKPLAERLLDSER 445 Query: 657 NGVVAGPK-------GAAQRLGLKRTTLLSRMKRLGID 687 ++A + AA+ LG+ R+TL RM++ G++ Sbjct: 446 REIIAAVEKSNNNIASAARMLGINRSTLYYRMRKHGLE 483 >UniRef50_C0QE85 FhlA n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QE85_DESAH Length = 492 Score = 303 bits (775), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 190/452 (42%), Positives = 261/452 (57%), Gaps = 51/452 (11%) Query: 270 EMLLINLHERDDLA-------PYERMLFDTWGNQIQTL-----------CLL-PLMSGDT 310 E +L +R D+A PY LFD + T C++ PL DT Sbjct: 56 EGYTFSLEDRKDIAAIVQEGKPY---LFDEAEPHVDTYAGVVDFPADHSCMVTPLYLDDT 112 Query: 311 MLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQ 370 + GVL L FT N+ L+ +++ +++A+ + KE L E+LA+ ++ Sbjct: 113 LQGVLTLDHHSCNRFTPQNVRLVGTLSKLISLAIAQS-------NDKEALEKEHLAILQE 165 Query: 371 LNNV----DSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS 426 N + E+IG S + V MVA S + VLI GETGTGKE++ARA+H LS Sbjct: 166 RNFLLERNAGALSELIGNSVSWNRVKDAAAMVAASQTPVLIQGETGTGKEVVARAVHRLS 225 Query: 427 GRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMP 486 R + +NC+A+ AG+ ES+LFGHE+G FTGA + R GRFELAD +LFLDE+GD+P Sbjct: 226 DRKGGPFIPVNCSAISAGVAESELFGHEKGGFTGAVSSRKGRFELADGGTLFLDEIGDLP 285 Query: 487 LELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFP 546 LE+QPKLLR LQE++ ER+G I DVR+IAA++ DL V + FR DLYYRLNVFP Sbjct: 286 LEIQPKLLRALQEKKLERIGGESTISVDVRIIAASHVDLYTAVRENRFREDLYYRLNVFP 345 Query: 547 IHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIE 606 I LPPLRER DI +LA+ FT +I R G ++ E++ L +WPGNVR+L+N +E Sbjct: 346 IRLPPLRERGSDILILAEYFTGQIRARAGHKDLALAPESVDILLQADWPGNVRQLQNTLE 405 Query: 607 RAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGED-------EYQLIV-----RVLK 654 RA +L+RG V++ IV ETP + L G D + ++V +VL Sbjct: 406 RAAILSRGGVIRAE--HIV--ADETPEDS--FCLPGADLDATALLRFDVMVKAYLQKVLT 459 Query: 655 ETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 T G V G GAA+ L LK TTL S++K+ GI Sbjct: 460 RTGGKVYGKGGAAEILDLKPTTLHSKLKKYGI 491 >UniRef50_B8F9P9 Sigma 54 interacting domain protein n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8F9P9_DESAA Length = 514 Score = 302 bits (774), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 172/395 (43%), Positives = 240/395 (60%), Gaps = 7/395 (1%) Query: 297 IQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRL 356 I++L ++ L G +GV+ E F +L+ LR + A+A+ N+ Y E+ L Sbjct: 113 IRSLMMMRLSLGSKEVGVIAFEARGESRFRREHLHRLRLLQSPFAVAISNSRRYIELLEL 172 Query: 357 KERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKE 416 K L D+N L ++L + S+ EIIG + V++QV VA S VL++GETG GKE Sbjct: 173 KNLLADDNKYLQQELLSQKSD--EIIGADFGLKHVMQQVNKVAPLSSPVLLMGETGVGKE 230 Query: 417 LIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSS 476 +IA AIH S R N +K+NC A+ L++S+LFGH RGAFTGA + GRFE A + S Sbjct: 231 VIANAIHKYSSRRNEPFIKVNCGAISETLIDSELFGHVRGAFTGAFENKRGRFERAHQGS 290 Query: 477 LFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRS 536 +FLDE+G++P Q +LLRVLQE EFE +GS K I+ D R+IAATNR+L+ MVA+ FR Sbjct: 291 IFLDEIGELPKAAQLRLLRVLQEMEFEPVGSAKTIKVDARVIAATNRNLEDMVAEGSFRK 350 Query: 537 DLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLG-RNIDSIPAETLRTLSNMEWP 595 DLY+RL VFPI++PPLRER DIP L + F K R +G S+ ++ L EWP Sbjct: 351 DLYFRLKVFPIYIPPLRERACDIPALTQYFMHKKYREMGFAEYPSLAPGAVKRLEAYEWP 410 Query: 596 GNVRELENVIERAVLLTRGNVLQLSLPDIVLPE--PETPP--AATVVALEGEDEYQLIVR 651 GNVRELEN +ERA++++ G L P PE P A A+ E I++ Sbjct: 411 GNVRELENAVERAMIVSGGKTLHFDDSGFEKPRCVPEEAPHDAEDSPAMLDEVISSHIIK 470 Query: 652 VLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 +L T G + G GAA+ +G+ TL ++M++LGI Sbjct: 471 MLHRTKGKINGEDGAARAMGVNPATLRNKMRKLGI 505 >UniRef50_Q12K16 DNA-binding protein Fis / transcriptional regulator, Fis family n=23 Tax=Alteromonadales RepID=Q12K16_SHEDO Length = 495 Score = 301 bits (772), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 166/384 (43%), Positives = 239/384 (62%), Gaps = 20/384 (5%) Query: 304 PLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDE 363 P+ G M+GV+ + R I+ + + A ++ L E+L E Sbjct: 115 PVYQGSVMVGVIAI---------------FRDISVQKQTELSLRQALNQVQALSEQLAAE 159 Query: 364 NLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIH 423 N L + L + G I G S M +L+Q+ +VA ++STVLI GE+GTGKEL+AR +H Sbjct: 160 NHELQQALADKTGNMG-IKGSSPVMAHLLQQIHLVANTNSTVLICGESGTGKELVARNLH 218 Query: 424 NLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVG 483 LS R ++ MV +NCAA LLES+LFGHE+GAFTGA+ QR G+FE ADK +LFLDEV Sbjct: 219 QLSRRKHKLMVSVNCAAFSPSLLESELFGHEKGAFTGANTQRKGKFEQADKGTLFLDEVA 278 Query: 484 DMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLN 543 ++ LE Q KLLRV+QEQEF+RLG + I+ D+RLIAA++ +L + V FR DLYYRLN Sbjct: 279 ELSLEAQSKLLRVIQEQEFQRLGGSSNIKIDIRLIAASHHNLLERVEQGLFRMDLYYRLN 338 Query: 544 VFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELEN 603 VFPIH+PPLR+R ED+P L ++ I+++L + I + + L WPGNVREL+N Sbjct: 339 VFPIHVPPLRDRLEDMPELVESMLLNISKKLAKKITCVSQAGMAELKAYHWPGNVRELQN 398 Query: 604 VIERAVLLTRGNVLQL-SLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAG 662 ++ER +L++ + L + LP L + P+A L + + I L++ N ++G Sbjct: 399 ILEREAILSQASELDIHQLPFKEL--SKIKPSANRQTL-AQAQATHIRHTLEQLNWQISG 455 Query: 663 PKGAAQRLGLKRTTLLSRMKRLGI 686 GAA++LGL +TL S+M++LGI Sbjct: 456 EHGAAKQLGLPASTLRSKMQKLGI 479 >UniRef50_C6E9E0 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Deltaproteobacteria RepID=C6E9E0_GEOSM Length = 467 Score = 301 bits (771), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 160/310 (51%), Positives = 211/310 (68%), Gaps = 15/310 (4%) Query: 381 IIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAA 440 IIG SE M S+ + +E VA SDSTVLI GE+GTGKEL+ARAIH+LS R+++ V +NCAA Sbjct: 144 IIGESEKMLSLFEMIEKVATSDSTVLIQGESGTGKELVARAIHDLSNRSDKNFVALNCAA 203 Query: 441 MPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQ 500 +P LLES+LFGH +G+FTGA A RIGRFE+ADK +LFLDE+GDM LQ KLLRVLQ + Sbjct: 204 IPDELLESELFGHVKGSFTGAVASRIGRFEMADKGTLFLDEIGDMKANLQVKLLRVLQSR 263 Query: 501 EFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIP 560 E E +GS + + DVR+IAATN++L MVA +EFR DLYYRL+V PI LPPLRER D+P Sbjct: 264 ELEPVGSTRSKKVDVRIIAATNQNLDHMVASKEFREDLYYRLSVIPIMLPPLRERGSDVP 323 Query: 561 LLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQL- 619 LL +F K R R + + + LSN +WPGNVRELEN++ER V++ V+ + Sbjct: 324 LLLNSFLEKFNRSKQRKVQGFDKQVMEILSNYDWPGNVRELENLVERLVIIKTTGVISIH 383 Query: 620 SLPD---------IVLPEPETPPAATVVALEGEDEYQ--LIVRVLKETNGVVAGPKGAAQ 668 LP+ ++ EP T P +E++ LI++ L+++ G K AA+ Sbjct: 384 DLPEKYRGGRTTTVLHGEPMTLPDDGFCLNSAVEEFENRLILQALEKSGG---NKKEAAE 440 Query: 669 RLGLKRTTLL 678 L LKRTTL+ Sbjct: 441 LLNLKRTTLI 450 >UniRef50_Q2IEG0 Transcriptional regulator, Fis family / DNA-binding protein Fis n=1 Tax=Anaeromyxobacter dehalogenans 2CP-C RepID=Q2IEG0_ANADE Length = 520 Score = 301 bits (770), Expect = 8e-80, Method: Compositional matrix adjust. Identities = 168/395 (42%), Positives = 245/395 (62%), Gaps = 20/395 (5%) Query: 303 LPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVD 362 +PL T LG L L + +T + LL +A+ A+A+ NALA+QE+ ++++ L+D Sbjct: 122 VPLRVESTQLGFLLLRAAGKGRYTAAHAELLATVADPCAVALANALAHQELVQVRDELLD 181 Query: 363 ENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAI 422 + L +L + ++ E+IG S + SV++ V A +STVL+LGETG GK++IA + Sbjct: 182 DKRFLNRELFHATAD--EVIGGSTGLRSVMELVRQAAPLNSTVLLLGETGVGKDVIANVL 239 Query: 423 HNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEV 482 H+ S R +K+NC A+P GL++S++FGHE GAFTGA A GRFE AD ++FLDE+ Sbjct: 240 HDASPRREGPFIKVNCGAIPEGLVDSEMFGHEAGAFTGARAAHRGRFERADGGTIFLDEI 299 Query: 483 GDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRL 542 GD+P Q +LLRVLQ +E ER+G + ++ D+R+IAAT+++L++MV + FR DL++RL Sbjct: 300 GDLPKGAQVRLLRVLQSREIERVGGTRPLKVDIRVIAATHQNLQQMVTEGRFREDLFFRL 359 Query: 543 NVFPIHLPPLRERPEDIPLLAKAFTFKIARRLG-RNIDSIPAETLRTLSNMEWPGNVREL 601 NV PI++PPLR R EDIP L + F R LG R +I L L WPGNVREL Sbjct: 360 NVLPINIPPLRLRAEDIPALVRHFVAVKRRGLGIRGTPTISPGALARLQAYAWPGNVREL 419 Query: 602 ENVIERAVLLTRGNVLQLSLPDIVLPEPETPPA----------ATVVALEGEDEYQLIVR 651 ENV+ER ++ + G +LS ++ + + P+ A V+A ED Sbjct: 420 ENVVERELVRSAGRGRELSFEELARSQARSAPSRHEAPPPRTLADVMAAHIED------- 472 Query: 652 VLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 VL T G + GP GAA+ LG+ +TL +RM RLGI Sbjct: 473 VLAATGGKIHGPGGAAELLGVNESTLRNRMNRLGI 507 >UniRef50_B8FD65 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FD65_DESAA Length = 447 Score = 301 bits (770), Expect = 8e-80, Method: Compositional matrix adjust. Identities = 163/339 (48%), Positives = 224/339 (66%), Gaps = 23/339 (6%) Query: 367 LTEQLNNVDSE--FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHN 424 ++E LN +++ F EI+ +S+AM VL Q++ VA +DSTVLI GE+GTGKEL+A +IH Sbjct: 112 VSEVLNRIEARKLFPEIVAQSKAMRQVLSQIKRVAPTDSTVLITGESGTGKELVADSIHR 171 Query: 425 LSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGD 484 S RN RR VK+NCAA+P LLES+LFG+E+GAFTGA+A++ G+FE A+ ++FLDE+GD Sbjct: 172 HSQRNGRRFVKINCAAIPDTLLESELFGYEKGAFTGAAARKPGKFEQANGGTVFLDEIGD 231 Query: 485 MPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNV 544 MPLE Q K+LRVL+E+E +RLG + I DVR++AATNR+++KMVAD FR DL++RLNV Sbjct: 232 MPLETQAKILRVLEEKEVDRLGGVRPIPVDVRVVAATNRNIQKMVADGAFREDLFFRLNV 291 Query: 545 FPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENV 604 FPI LPPLRERPEDIP L + F + +I + L +WPGNVREL N Sbjct: 292 FPIQLPPLRERPEDIPFLIEEFM-----KFSSKESTISPPAMHILCAHQWPGNVRELRNA 346 Query: 605 IERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGEDEY------------QLIVRV 652 +E ++L + V LP + P A V+ + GEDE ++V Sbjct: 347 VESSLLFGKEVVEPEHLPPALAGSMAVPTPAGVL-ISGEDESLDLDFRLQELEKGILVEA 405 Query: 653 LKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSAL 691 LK ++GV A AA+ LG+K +L R+K+ GID S + Sbjct: 406 LKRSDGVQA---QAARLLGIKERSLWHRVKKYGIDVSQI 441 >UniRef50_A6EHC6 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Pedobacter sp. BAL39 RepID=A6EHC6_9SPHI Length = 646 Score = 300 bits (768), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 155/314 (49%), Positives = 215/314 (68%), Gaps = 1/314 (0%) Query: 374 VDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRM 433 ++S+F IIG+S + V +++++VA D++VLILGE+GTGKE +A IH LS R ++ M Sbjct: 327 LESDFHGIIGQSSLLKDVFRKIQLVAADDTSVLILGESGTGKERVAHTIHKLSPRKSKPM 386 Query: 434 VKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKL 493 V +NCAA+P L+ES+LFGHE+GAFTGA+ +RIG+FE AD S+FLDE+G++PLE Q KL Sbjct: 387 VTVNCAALPLTLIESELFGHEKGAFTGANDKRIGKFEQADGGSIFLDEIGELPLEAQVKL 446 Query: 494 LRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLR 553 LRVLQE+E ERLG N + +VR+I ATNR+L+K VA+ FR DLYYRLNVFPI LP LR Sbjct: 447 LRVLQEKEIERLGGNGTKKINVRIITATNRNLEKEVAEGRFRLDLYYRLNVFPIELPSLR 506 Query: 554 ERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTR 613 +R EDIPLL+ F K ++ I + A ++ L +WPGN+RELE++IER+VLL++ Sbjct: 507 QRKEDIPLLSHHFIKKYSKNASAQIGGVSAASMEELQQYDWPGNIRELEHLIERSVLLSK 566 Query: 614 GNVLQLSLPDIVLPEPETPPAATV-VALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGL 672 + + P + + E E I+ +LK G V GP GAA+ L + Sbjct: 567 EEEITTIIVPTTTPSLAGSNSGEFRIKTMEEMERDHILSILKMCKGKVFGPGGAAEILNM 626 Query: 673 KRTTLLSRMKRLGI 686 TTL S++K+LGI Sbjct: 627 PSTTLNSKIKKLGI 640 >UniRef50_C5BI62 Transcriptional regulator, Fis family n=5 Tax=Gammaproteobacteria RepID=C5BI62_TERTT Length = 642 Score = 299 bits (766), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 170/370 (45%), Positives = 231/370 (62%), Gaps = 13/370 (3%) Query: 332 LLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSV 391 + R I+ER+ A +E+ LK RL DEN A +Q ++ + IIG + + Sbjct: 273 VFRDISERIETQRQLENALRELSELKARLEDEN-AYLQQEYLIERNYHGIIGEGAGIKRI 331 Query: 392 LKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLF 451 +Q+E+VAQ+++ VL+ GE+GTGKELIA+AIH S R ++ M+++NCAA+ L ES+ F Sbjct: 332 KQQIELVAQTEANVLVYGESGTGKELIAQAIHQASRRADKPMIRVNCAAIAHELFESEFF 391 Query: 452 GHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKII 511 GH +GAFTGA RIGRFELA+ +LFLDEVG++PLELQ KLLRVLQE + ER+G K Sbjct: 392 GHIKGAFTGALRDRIGRFELANGGTLFLDEVGEIPLELQSKLLRVLQEGQLERVGEEKTR 451 Query: 512 QTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIA 571 + DVR+IAATNRDLK FR DLY+RLNVFPI PLR+R EDI LLA + ++ Sbjct: 452 EVDVRIIAATNRDLKAEADQGRFREDLYFRLNVFPIQAVPLRDRREDIGLLAAHYLEQLC 511 Query: 572 RRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVL---PE 628 + R + L+ L + WPGNVREL+NV+ERAV+ +R L L LP + Sbjct: 512 HKFPRQQCKLTQRDLKQLRDYAWPGNVRELQNVLERAVITSRAGRLNLDLPQHNHQDNAQ 571 Query: 629 PETPPAATVVALEGE----DEYQLIVR-----VLKETNGVVAGPKGAAQRLGLKRTTLLS 679 P P T E E D+ Q +V+ L+++ + G GAA LG+K TTL S Sbjct: 572 PTLPALNTESITETEILSDDDMQALVKHNMLAALEKSGWKLFGSDGAAALLGMKPTTLAS 631 Query: 680 RMKRLGIDKS 689 R+KR+G+ S Sbjct: 632 RIKRMGLKPS 641 >UniRef50_B0SC18 Transcriptional regulator n=7 Tax=Bacteria RepID=B0SC18_LEPBA Length = 705 Score = 299 bits (766), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 190/501 (37%), Positives = 285/501 (56%), Gaps = 27/501 (5%) Query: 151 NRLQTFT----QIVSVVTEQIQSRVVNNVDYELLCRERDNFR-ILVAITNAVLSRLDMDE 205 NRL FT +IVSV+ Q ++ N+ +R + L+ I+ V S LD +E Sbjct: 133 NRLNAFTPEMLEIVSVLANQ-AGQIFKNLQTIRSLEQRTKIQATLIEISKVVSSTLDQNE 191 Query: 206 LVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQHPAHEQSEVDEAGTLTERV 265 + + + ++ SIVL + + L I + L + E+ +T +V Sbjct: 192 VFDSIMVTMEKSLRLEKGSIVLFNKEEALLRIVAASGLSPEEI--EKGTYQPGEGITGKV 249 Query: 266 FKSKEMLLINLHERDDLAPYERML--------FDTWGNQIQTLCLLPLMSGDTMLGVLKL 317 ++S E ++I + +A + L F + + LC P++S T LGV+ Sbjct: 250 YESGEPIII-----ESVASHPDFLNRVGYLSHFKHDPHNVSLLCA-PILSEQTTLGVVNA 303 Query: 318 AQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQE-IHRLKERLVDENLALTEQLNNVDS 376 + K T+L + VA + ++ Q + K+ + EN+ L +L N Sbjct: 304 FIVQNK---HTDLKSFLDFLQVVASIISQSIKIQNLVEEAKKEISRENIQLKRELKN-KY 359 Query: 377 EFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKM 436 +FG +IG++ +M + +++++VA S ++VLI GE+GTGKE+IA AIH S R+ VK+ Sbjct: 360 KFGSLIGKAASMEKMFEKIQLVADSRASVLITGESGTGKEMIANAIHYNSSRSENPFVKI 419 Query: 437 NCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRV 496 NCAA+P LLES+LFGH++G+FTGA + G+FELAD ++FLDE+G+M L LQ KLLRV Sbjct: 420 NCAAIPENLLESELFGHKKGSFTGAVTDKKGKFELADTGTIFLDEIGEMDLNLQSKLLRV 479 Query: 497 LQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERP 556 LQE+E E +GS K + DVR+IAATN +L+++VA+++FR+DL+YRLNV I+ PPLR+R Sbjct: 480 LQEREIEAIGSTKAKKVDVRIIAATNAELEQLVAEKKFRADLFYRLNVVKINTPPLRDRV 539 Query: 557 EDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNV 616 EDIPLL F K + ++I I E R L WPGNVRELENVIERAV+L + + Sbjct: 540 EDIPLLMNHFLEKYTKDNNKSIKGISREASRLLLKYRWPGNVRELENVIERAVVLAQDEI 599 Query: 617 LQLSLPDIVLPEPETPPAATV 637 L +L E P TV Sbjct: 600 LNEEDFSDILSNMEEMPDNTV 620 >UniRef50_B5JMU1 Sigma-54 interaction domain family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JMU1_9BACT Length = 539 Score = 297 bits (761), Expect = 8e-79, Method: Compositional matrix adjust. Identities = 201/528 (38%), Positives = 287/528 (54%), Gaps = 42/528 (7%) Query: 181 CRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYST 240 CR +L +I+ + LD+ ++V + + + ++ +I + + + Sbjct: 31 CRSVQELGLLFSISQTLEKSLDLGDIVRPALRRMQGFIGLERGTISILNRDTGGFLLAEA 90 Query: 241 HYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERM------------ 288 L + P + +D + ER +S++ ++I DLA + R Sbjct: 91 IGLPRGLPP--ANYLDMIRPILERTVESRDPVVIT-----DLAVWARKQGVEEDVLESLR 143 Query: 289 LFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAV---- 344 L D G + +PL + +G L + + ++L +L IA VA A Sbjct: 144 LADGVG-----MVSVPLKFDEEAIGTLSIERANTNFGWESDLRILGMIASIVAQAARVRR 198 Query: 345 DNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDST 404 D A Q + ERL E +A + N IIG S M SV +E VA S +T Sbjct: 199 DAAEQIQSLRAENERL-QEEIAHGFRPEN-------IIGSSSTMRSVYYHIEQVANSATT 250 Query: 405 VLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQ 464 VLI GE+GTGKEL+A+A+H S R N+ VK NCAA+P ++ES+LFGHE+GAFTGA A Sbjct: 251 VLIRGESGTGKELVAKALHEKSSRRNKPFVKFNCAALPDSIIESELFGHEKGAFTGALAM 310 Query: 465 RIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRD 524 R GRFE A+ ++FLDE+GD+ L Q KLLRVLQE+EFER+GS + + DVR+IAAT+R+ Sbjct: 311 RKGRFESANGGTIFLDEIGDISLSTQVKLLRVLQEREFERVGSQETRRVDVRVIAATSRN 370 Query: 525 LKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAE 584 L++M+ FR DLYYRLNVFPI++PPLRER DI +LA F K A+R+GR I + Sbjct: 371 LEEMMEAGTFREDLYYRLNVFPIYMPPLRERKCDILMLADHFIEKFAKRMGRKPIRISSA 430 Query: 585 TLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGED 644 + L + W GNVRELEN IERAVLL +G ++ L + ++ V LE Sbjct: 431 AIDMLVSYHWAGNVRELENCIERAVLLAKGQSIKAHHLPPTLQKKSRAESSEVATLEDAI 490 Query: 645 ---EYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKS 689 E ++IV LKET +A A++RLGL R+K+ GID S Sbjct: 491 QALEREMIVDALKETGSNLA---EASRRLGLTERKAGLRVKKYGIDVS 535 >UniRef50_C7PQF7 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Bacteroidetes RepID=C7PQF7_CHIPD Length = 461 Score = 296 bits (759), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 156/314 (49%), Positives = 218/314 (69%), Gaps = 7/314 (2%) Query: 381 IIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAA 440 IIG S+ + ++ + +VA SD++VLI GE+GTGKE IA IH LSGR ++ ++K+NCAA Sbjct: 148 IIGESQRLQQTMQHLSVVAPSDTSVLITGESGTGKEKIADLIHRLSGRASKPLIKVNCAA 207 Query: 441 MPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQ 500 MPA L+ES LFGHE+GAF+GA + IG+FE A S+FLDE+G+MP+++Q KLLRVLQE+ Sbjct: 208 MPAELIESLLFGHEKGAFSGALERHIGKFEQASGGSIFLDEIGEMPVDMQVKLLRVLQEK 267 Query: 501 EFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIP 560 E ER+G+ + DVR+I+AT+R+L+K VAD FR D YYRLNVFP+HLPPLRER EDIP Sbjct: 268 EIERIGAMHSQKVDVRIISATSRNLEKEVADGRFRMDFYYRLNVFPLHLPPLRERREDIP 327 Query: 561 LLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVL-QL 619 L F R +GR + ++ + +L WPGN+RELE++IER+VLL G V+ Q+ Sbjct: 328 ALVDYFLEMHCRNIGRPLVTVTRRVMDSLILYSWPGNIRELEHLIERSVLLCEGPVITQI 387 Query: 620 SLPDIVLPEPETPPAAT--VVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTL 677 +LP+ + E P A V E+E + I+ VL+ G + G GAA+ L + +TL Sbjct: 388 TLPEKI----EYVPVAQEERVKTMQENEREHIIDVLRRCRGKIFGKGGAAELLSMNVSTL 443 Query: 678 LSRMKRLGIDKSAL 691 R+++LGI+K L Sbjct: 444 NYRIRKLGINKDEL 457 >UniRef50_B8FJT8 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=B8FJT8_DESAA Length = 464 Score = 296 bits (759), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 180/425 (42%), Positives = 248/425 (58%), Gaps = 28/425 (6%) Query: 282 LAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVA 341 +A ++ FD + T +P M G +L L+ + + T +R E + Sbjct: 44 VAELDKQFFDV----VVTDLNMPGMDGMGVLKHLQKHSQDTQCLVLTGFGSIRNSVEAIK 99 Query: 342 IA----VDNALAYQEI-HRLK-----ERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSV 391 + + + + E+ H + +RL EN L +QL F +G S + V Sbjct: 100 MGAFDYITKPVKFDELLHSVSTAIKFKRLERENTILKKQLKK-KYRFENFVGDSPQIQRV 158 Query: 392 LKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLF 451 + +E VA +DSTVLI GE+GTGKELIARAIH S R + MV +NC A+P LLES+LF Sbjct: 159 FELIEKVADTDSTVLITGESGTGKELIARAIHYNSPRRDDPMVIINCGAIPEELLESELF 218 Query: 452 GHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKII 511 GHE+GAFTGA RIGRFE+A+ ++FLDE+GDM LQ KLLRV+QEQ FER+GS + + Sbjct: 219 GHEKGAFTGAHKTRIGRFEVANGGTIFLDEIGDMSPNLQVKLLRVIQEQAFERIGSTRTM 278 Query: 512 QTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIA 571 D+R++AATN+DL + V +EFR DLYYRLNV PI +PPLR+R DIPLL F K+A Sbjct: 279 HVDIRILAATNKDLMEAVEKKEFREDLYYRLNVIPIEVPPLRDRKSDIPLLIDFFINKLA 338 Query: 572 RRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVL-QLSLPDIVL---- 626 R + I + L WPGNVRELENV+ER ++L+ G+ + + LP +L Sbjct: 339 AEKERPVKRISQAAMNALMGHHWPGNVRELENVVERVLILSSGDTIDKEDLPATILGLDS 398 Query: 627 PEPETP---PAATVVALEGEDEYQ--LIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRM 681 EPE P+ + +EY+ LIV+ L+E N V AA+ L + RTTL+ +M Sbjct: 399 KEPEAGLKLPSGGIRFDHAVEEYEKNLIVQALEEANWV---KTQAAKLLHINRTTLVEKM 455 Query: 682 KRLGI 686 KR I Sbjct: 456 KRKNI 460 >UniRef50_B8GM58 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GM58_THISH Length = 509 Score = 295 bits (755), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 178/340 (52%), Positives = 225/340 (66%), Gaps = 16/340 (4%) Query: 362 DENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARA 421 DE AL +L ++ F EI+G S A+ +L + VA S++TVLI GETGTGKELIARA Sbjct: 171 DEAAALRAELGSLRG-FEEILGESAALRRLLADIGRVAPSEATVLITGETGTGKELIARA 229 Query: 422 IHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDE 481 IH S R+ ++K+NCAA+ A L ES+ FGHE+GAFTGA+ +R GRF+LAD +LFLDE Sbjct: 230 IHRHSRRSQGPLIKVNCAAITATLQESEFFGHEKGAFTGAAQRRDGRFKLADGGTLFLDE 289 Query: 482 VGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYR 541 VG+MPL+LQ KLLRVLQE EFE +GS + ++ DVR+IAAT+RDL +MV + FR DL YR Sbjct: 290 VGEMPLDLQAKLLRVLQEGEFEPVGSGRTVRVDVRVIAATHRDLTQMVREGGFREDLLYR 349 Query: 542 LNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSI-PAETLRTLSNMEWPGNVRE 600 LNVFP+H PPLRER ED+ LLA+A ++AR+ G + + PA+ R L WPGNVRE Sbjct: 350 LNVFPLHAPPLRERGEDVVLLAEAIATRLARQEGATLAPLSPADRAR-LKAHPWPGNVRE 408 Query: 601 LENVIERAVLLTR----GNVLQL--SLPDIVLPEPETP-----PAATVVALEG-EDEYQL 648 LENVIERA + G VL L +LP + P TP P A A E + E Sbjct: 409 LENVIERAWITGTDTPDGRVLNLVRALPGSEV-TPRTPGLAADPDAVFTAAEMLQMERSN 467 Query: 649 IVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDK 688 I R L ++G GAA+ LGL TL SRMK LGI + Sbjct: 468 IERALVSCQWKLSGVGGAARLLGLHPNTLASRMKSLGIRR 507 >UniRef50_B2V8F5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Sulfurihydrogenibium RepID=B2V8F5_SULSY Length = 440 Score = 295 bits (755), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 148/321 (46%), Positives = 224/321 (69%), Gaps = 12/321 (3%) Query: 373 NVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRR 432 +V+ EF IIG+S+ M + K++++V++S+S++LI GE+GTGKEL+A+AIH S R N+ Sbjct: 124 DVEEEFEGIIGKSQKMKDLFKEIDVVSKSESSILIEGESGTGKELVAKAIHRRSKRANQP 183 Query: 433 MVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPK 492 + +NC+A+P L E++LFGHE+G+FTGAS + IG+ ELA + +LFLDE+G+MPL +Q K Sbjct: 184 FIPINCSAIPNELFENELFGHEKGSFTGASNREIGKIELAGEGTLFLDEIGEMPLFMQAK 243 Query: 493 LLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPL 552 LLRVLQE+EF R+G ++I+ R+I+ATNR+L++MV ++EFR DL+YR+NV + +PPL Sbjct: 244 LLRVLQEREFFRVGGKELIKMRCRVISATNRNLEEMVENKEFREDLFYRINVIHLKIPPL 303 Query: 553 RERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLT 612 RER EDIPLL K F K ++ +N+ I + L L N +WPGNVR+LEN+IERAV+L Sbjct: 304 RERKEDIPLLVKKFIDKFSKINNKNVYDIDNDALEILMNYDWPGNVRQLENIIERAVVLC 363 Query: 613 RGNVLQLS-LPDIVLPEPETPPAATVVALEGED------EYQLIVRVLKETNGVVAGPKG 665 +G ++ + LPD + + + + + E E +I++VL+E N Sbjct: 364 QGEIITANHLPDRI--KSNSQKISENIRSENNSLNLYDIEKNIILKVLQEEN---FNQTR 418 Query: 666 AAQRLGLKRTTLLSRMKRLGI 686 AAQ+LG+ R L ++MK G+ Sbjct: 419 AAQKLGISRKQLRTKMKNFGL 439 >UniRef50_C7PLV9 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PLV9_CHIPD Length = 515 Score = 294 bits (753), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 153/307 (49%), Positives = 216/307 (70%), Gaps = 2/307 (0%) Query: 387 AMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLL 446 A+ V++QV VA +D+TVL+ GETGTGKEL A AIH S R + VK+NCAA+P L+ Sbjct: 209 ALRPVIQQVRQVAPTDATVLLTGETGTGKELFAEAIHLSSMRRQKAFVKINCAALPPQLI 268 Query: 447 ESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLG 506 ES+LFGHE+GAFTGA +RIG+FE+A+ +LFLDE+G++PL++Q KLLRV+QE+E ER+G Sbjct: 269 ESELFGHEKGAFTGAIHRRIGKFEMAEGGTLFLDEIGELPLDMQAKLLRVIQEKEIERIG 328 Query: 507 SNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAF 566 + I +VR+IAATNR L++ V FR DLYYRL VFPIHLP LRER EDIPLL + F Sbjct: 329 GTETIPVNVRIIAATNRTLEEEVRQGRFRQDLYYRLYVFPIHLPALRERREDIPLLLQHF 388 Query: 567 TFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLP-DIV 625 A + G+ I I + ++ L + WPGN+RE+E+++ERAV+ + + +++P + Sbjct: 389 ARNAAMKYGKPIRHIASGSVLALMDYTWPGNIREMEHMVERAVISSDEPQITIAVPGNRK 448 Query: 626 LPEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLG 685 E + + ++ L E E Q I+R L+ +NG + GP+GAA L +K TTL +RMK+LG Sbjct: 449 ALEADGNSLSPLLTL-AETERQTIIRALRYSNGRIRGPQGAADLLDIKPTTLEARMKKLG 507 Query: 686 IDKSALI 692 I K ++ Sbjct: 508 IVKEHVV 514 >UniRef50_C0QMI0 Sigma-54 dependent two component transcriptional regulator n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QMI0_DESAH Length = 524 Score = 294 bits (752), Expect = 8e-78, Method: Compositional matrix adjust. Identities = 163/407 (40%), Positives = 251/407 (61%), Gaps = 20/407 (4%) Query: 293 WGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQE 352 W + + + + +++G M G L + ++ + ++ L+ + E IA+ N L Y++ Sbjct: 111 WMDGLSAIMIEMVLTGKRM-GALPMISKKQIRYEKKHIRLISLLNEPFGIALTNCLRYRK 169 Query: 353 IHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETG 412 + LK RL+D+ L ++L +V+ + EI+G + V++ V VA +S VL+LGETG Sbjct: 170 VKELKNRLLDDKRYLEKELFHVNIQ--EIVGSDGGLKGVMESVAQVAALNSPVLLLGETG 227 Query: 413 TGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELA 472 GKE+IA+AIH SGR + +K+NC A+P L++S+LFGHE+GAFTGA ++++GRFE A Sbjct: 228 VGKEVIAKAIHMASGRRSGPFIKVNCGAIPESLIDSELFGHEKGAFTGALSRKLGRFERA 287 Query: 473 DKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADR 532 ++FLDE+G++PL+ Q +LLRVL++ E ER+G ++ + D R++AATNRDL M+ +R Sbjct: 288 HLGTIFLDEIGELPLDAQTRLLRVLEDMEIERVGGDETVSIDSRVLAATNRDLDAMIKNR 347 Query: 533 EFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNM 592 +FR DLY+RL VFPI +PPLR+R DIP L F K A+ + IPA L +L + Sbjct: 348 QFREDLYFRLKVFPIEIPPLRDRKTDIPALVHYFMHKKAKEIA--FPGIPALALNSLPIL 405 Query: 593 ---EWPGNVRELENVIERAVLLTRGNVLQLSLPDI---VLPEPE--TPPAATVVALEGED 644 +WPGN+RELEN +ERA++ RG + LS D+ + P+ P V A +G Sbjct: 406 MAYDWPGNIRELENAVERALITCRG--MPLSFDDLATAIGPKKGMIAPKDTDVEATDGLS 463 Query: 645 EYQL-----IVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 I + L++ G V GP GAA L + TL +M+RLG+ Sbjct: 464 TLNAAAASHIRKALQKCRGRVEGPHGAAVLLDVHPATLRQKMRRLGV 510 >UniRef50_C8X5C3 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X5C3_DESRD Length = 521 Score = 294 bits (752), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 169/377 (44%), Positives = 233/377 (61%), Gaps = 24/377 (6%) Query: 325 FTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGR 384 +T + L + E ++IA+ NAL ++E+ RL E L D++ ++L + E++G Sbjct: 144 YTEEHGRLFVLLREPLSIALANALKHREVVRLNELLADDSRYFQQELRAKQGQ--EVVGA 201 Query: 385 SEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 444 + V++Q + VAQ D+ VL+LGETG GK +IA IH LS R M+ +NC A+PA Sbjct: 202 EFGLRGVMEQAQQVAQLDNPVLLLGETGCGKGMIADTIHKLSRRAQGPMITVNCGAIPAS 261 Query: 445 LLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFER 504 LLES+LFGHE+GAFTGA Q+ GRFE A ++FLDE+G++PLE Q KLL VLQ +E ER Sbjct: 262 LLESELFGHEKGAFTGAERQKRGRFERAQGGTVFLDEIGELPLESQVKLLHVLQHKEIER 321 Query: 505 LGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAK 564 +G ++ I D+R+IAATNRDL MV+ +FR DL+YRLNVFP+ +PPLR+R EDIP L + Sbjct: 322 VGGSQTIALDIRIIAATNRDLAGMVSSGQFREDLWYRLNVFPVMVPPLRQRKEDIPALVR 381 Query: 565 AFTFKIARRLG-RNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQL-SLP 622 F A L + +P+ L L WPGNVRELEN IERA++ T G L++ SL Sbjct: 382 YFLQHKAVELKLPSRPKLPSGALDKLMAYHWPGNVRELENFIERALIQTPGGELEIDSLL 441 Query: 623 DIVLP--------EPET-----PPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQR 669 D +L EPE P TV A + I + L+ G ++GP GAA+ Sbjct: 442 DNLLQTDGTRGSWEPEVNSNQLPSLETVCA-------EHIRKALRRAGGKISGPGGAAEM 494 Query: 670 LGLKRTTLLSRMKRLGI 686 LG+ TL RM ++GI Sbjct: 495 LGVHPNTLRQRMDKMGI 511 >UniRef50_A8ZZC1 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZZC1_DESOH Length = 926 Score = 293 bits (749), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 163/309 (52%), Positives = 206/309 (66%), Gaps = 6/309 (1%) Query: 380 EIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCA 439 EI+G S + +VL QV+ VA +DSTVLILGETG GKEL+AR IH S R + ++ ++ Sbjct: 618 EIVGESSRIKAVLTQVDQVAPTDSTVLILGETGVGKELVARRIHQQSRRCDMPLIVVDPT 677 Query: 440 AMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQE 499 A+P GL+ES+LFGHE+GAFTGA Q+ G ELA + +LF+DEVG++P +Q KLLR LQE Sbjct: 678 AIPEGLVESELFGHEKGAFTGADRQKKGLLELAHQGTLFIDEVGEIPKSIQVKLLRALQE 737 Query: 500 QEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDI 559 + +RLG K + +D RLIAATNRDL VA FR DLYYRLNV PI +PPLRER +DI Sbjct: 738 KTIQRLGGTKPLFSDFRLIAATNRDLAGQVAAGRFREDLYYRLNVIPITVPPLRERKQDI 797 Query: 560 PLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQL 619 LLA F + + R R + E + L WPGNVRELENVIER VLL+ G+ L+L Sbjct: 798 VLLAACFLRRHSLRHNRPAMVLSPEVQQRLCAYPWPGNVRELENVIERGVLLSTGDHLEL 857 Query: 620 SLPDIVLPEPETPPAATVVALEGEDEYQ--LIVRVLKETNGVVAGPKGAAQRLGLKRTTL 677 LP P A L DE Q I VL++T G +AGP GAA+ LG+KRT+L Sbjct: 858 DLP----AGHTRPGADPFTDLPTLDELQRRYIHHVLEKTGGKIAGPDGAAKILGMKRTSL 913 Query: 678 LSRMKRLGI 686 +RMKRL + Sbjct: 914 YNRMKRLNV 922 >UniRef50_Q3A356 Two component, sigma54 specific, transcriptional regulator, Fis family n=11 Tax=Desulfuromonadales RepID=Q3A356_PELCD Length = 471 Score = 293 bits (749), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 172/340 (50%), Positives = 218/340 (64%), Gaps = 11/340 (3%) Query: 357 KERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKE 416 K RLV ENL L +QL F IIG S M V ++E V +DST+LILGE+GTGKE Sbjct: 133 KSRLVAENLYLRQQLRG-KYRFDNIIGNSLPMQYVFSRMEKVLNTDSTILILGESGTGKE 191 Query: 417 LIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSS 476 L+A+AIH R + V +NC A+PA LLES+LFGH RGAFTGA A + G+F+ A + + Sbjct: 192 LVAKAIHYNGHRREKPFVAINCGAIPAELLESELFGHVRGAFTGAVADKTGKFQQAHQGT 251 Query: 477 LFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRS 536 +FLDE+G MPL LQ KLLRVLQEQE E++GS+K I+ DVR+I+ATN +L++ V FR+ Sbjct: 252 IFLDEIGTMPLHLQMKLLRVLQEQEVEKVGSSKKIKLDVRVISATNCNLEEEVEQGRFRA 311 Query: 537 DLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPG 596 DLYYRLNV PI LPPLRER EDI LLA+ F K + + + SI + L N WPG Sbjct: 312 DLYYRLNVIPIALPPLRERREDIALLARYFLQKTCTEMNQPLISITPGAMNCLENYHWPG 371 Query: 597 NVRELENVIERAVLLTRGNVLQLS-LPDIV---LPEPETPPAATVVALE-GEDEYQLIVR 651 NVRELENVIER V LT + S LP + E E P + E G D ++I Sbjct: 372 NVRELENVIERTVTLTDSIAIGKSDLPANISGSCCEDEDPQISCPRLTESGMDMPEVIAG 431 Query: 652 V----LKETNGVVAGPKG-AAQRLGLKRTTLLSRMKRLGI 686 + +K G+ G K AA L +KRTTL+ ++KRLGI Sbjct: 432 IERCLIKSAMGLSGGVKARAASLLNIKRTTLVEKIKRLGI 471 >UniRef50_B8DJ70 Sigma54 specific transcriptional regulator, Fis family n=5 Tax=Desulfovibrio RepID=B8DJ70_DESVM Length = 601 Score = 292 bits (748), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 182/440 (41%), Positives = 241/440 (54%), Gaps = 51/440 (11%) Query: 297 IQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQ-----IAERVAIAVDNALAYQ 351 I PL M+GV+ + +L LL + A+ ++ AV NA +++ Sbjct: 160 IHAYAAYPLQFKGNMIGVMAVFYDRPMRGVLADLMLLHRKMHKIFADSLSAAVVNARSFE 219 Query: 352 EIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGET 411 EI L+ L EN L ++ + I+G S + L+QV+MVA +D+TVL+LGE+ Sbjct: 220 EIQHLRRALELENEHLRGEVRRARAPH-SIVGDSPPLRRALEQVDMVAPTDATVLLLGES 278 Query: 412 GTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFEL 471 GTGKEL+A+AIH+ S R +V++NC+A+P L ES+ FGH +GAFTGA R+GRF+L Sbjct: 279 GTGKELVAQAIHDRSQRAAAPLVRVNCSAIPRELFESEFFGHVKGAFTGALRDRVGRFQL 338 Query: 472 ADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVAD 531 AD +LFLDEVG++PLELQ KLLRVLQE FER+G + DVR+IAATNRDL+ V Sbjct: 339 ADGGTLFLDEVGEIPLELQGKLLRVLQEGVFERVGEERSRSVDVRIIAATNRDLRADVEH 398 Query: 532 REFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSN 591 FR DL++RL+VFP+ LPPLR R +DIPLLA+ F RRL I + L + Sbjct: 399 GRFRQDLFFRLSVFPVALPPLRARRDDIPLLARHFVRASCRRLNLPEPRIAHRQMAELQS 458 Query: 592 MEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAA-----TVVALEGEDEY 646 WPGNVREL+NVIER V++ G L L LP + +P AA +EG + Sbjct: 459 YPWPGNVRELQNVIERGVIMAEGGRLVLDLPPEGGMQAVSPGAAFGMPGGASPVEGGGAH 518 Query: 647 QL----------------------------------------IVRVLKETNGVVAGPKGA 666 I R L G V GP GA Sbjct: 519 DAPWGTGETGSAGKTADFGQTGAPDPAGIISEAHWRELQRANIERALTAAGGRVHGPGGA 578 Query: 667 AQRLGLKRTTLLSRMKRLGI 686 A+ LGL TTL SRMK LG+ Sbjct: 579 AELLGLPPTTLQSRMKTLGL 598 >UniRef50_A8FQ36 Formate hydrogenlyase transcriptional activator, putative n=9 Tax=Shewanella RepID=A8FQ36_SHESH Length = 518 Score = 291 bits (745), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 188/520 (36%), Positives = 286/520 (55%), Gaps = 49/520 (9%) Query: 194 TNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQHPAHEQS 253 T + S L ++E + I + ID I LNIY + D Q A Q Sbjct: 20 TQCLCSSLQLEESLQSYFDYIKSHLPIDGIY----------LNIYRPDFSDIQFIA--QV 67 Query: 254 EVDEAGTLTERVFKSKEML---------LINLHERDDLAPYERMLFDTWGNQIQTLCLLP 304 ++ TL R+ S EM +I + +L + + +I+++ LL Sbjct: 68 NDQQSSTLDRRIPISNEMCEALQDLDRPIIRIVNDIELDTVTQFVAPQVIPEIKSVILLR 127 Query: 305 LMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDEN 364 ++SG+T LGV+ + VF ++++L + ++ L + + R E L ++N Sbjct: 128 MVSGNTHLGVVGFYAKQAGVFRPRHVDMLEPHMQTFSLITAFNLKGRNLLRANEALAEQN 187 Query: 365 LALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHN 424 +L LN + ++G + V++QVE +A+ ++TVL+LGETG GKE+IA AIH Sbjct: 188 QSLKRTLNICNG----VVGAHSGLKHVMQQVESIAKLNTTVLMLGETGCGKEVIANAIHE 243 Query: 425 LSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGD 484 LS R N+ +K+NC A+P L++S++FG+ERGAFTGA +++ G FE A+ ++FLDE+G+ Sbjct: 244 LSLRANKPFIKVNCGAIPESLIDSEMFGYERGAFTGAESRKAGYFEQANGGTIFLDEIGE 303 Query: 485 MPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNV 544 +PL +Q +LLRVLQ R+G + +Q D+R+IAAT+R+LK MV+ EFR DL+YRL + Sbjct: 304 LPLSVQVRLLRVLQNSTITRVGGHDSVQLDIRVIAATHRNLKAMVSTGEFREDLWYRLAI 363 Query: 545 FPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIP---AETLRTLSNMEWPGNVREL 601 FPI +P LR+R DIPLL + F ++ + N D +P E L LS WPGNVREL Sbjct: 364 FPIEIPSLRQRRTDIPLLVQHFIEMLSAKF--NQDQLPRVAPEQLAILSQYHWPGNVREL 421 Query: 602 ENVIERAVLLTRGNVLQLSLPDIVLPEPET-------------PPAAT--VVALEGEDEY 646 NV+ERA++ L D ++PE + P AT +V LE Sbjct: 422 INVLERAIIQHPKGPLNF---DFLVPEVKAEHKEKRGETIIVDPSHATDKLVPLETMTR- 477 Query: 647 QLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 + I L+ T G + GP GAAQ L + T+ S+MK+LGI Sbjct: 478 KYIEHALRVTGGKLYGPGGAAQLLDINPNTMRSKMKKLGI 517 >UniRef50_Q4K714 Sigma-54 dependent DNA-binding response regulator n=6 Tax=cellular organisms RepID=Q4K714_PSEF5 Length = 465 Score = 291 bits (745), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 157/358 (43%), Positives = 231/358 (64%), Gaps = 24/358 (6%) Query: 342 IAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQS 401 I V AL +++I + +R+ E LA +Q+++ ++G S A VL+ V+ V +S Sbjct: 112 ITVSKALQFRDILKDNQRMRAE-LAEHQQIDS-------LVGDSPAFRRVLQAVDSVRES 163 Query: 402 DSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGA 461 ++T+L+ GE+GTGKE++ARAIH R ++ V +NCAA+P GLLES++FGH +GAFTGA Sbjct: 164 NATILLTGESGTGKEMVARAIHKHGNRADKPFVAVNCAAIPEGLLESEMFGHRKGAFTGA 223 Query: 462 SAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAAT 521 A R+GRF+ ADK +LFLDEVGDMPL LQ K+LR LQE+ E +G + + DVR+IAAT Sbjct: 224 VADRVGRFQQADKGTLFLDEVGDMPLALQAKILRALQERVIEPVGDPRERKVDVRVIAAT 283 Query: 522 NRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSI 581 N++L + VA++EFR DLYYRLNVFPI LP LRER EDI LLA+ F + G+ I Sbjct: 284 NKNLLEAVANKEFREDLYYRLNVFPIPLPALRERVEDIALLARHFAHSLGATAGKRISGF 343 Query: 582 PAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVL-QLSLPDIVL-PEPETPPAATVVA 639 E L+ +++ WPGN+REL+N +ERA ++ G V+ + LP + P+ + ++ ++ Sbjct: 344 SPEALQAMASYAWPGNIRELQNCVERATIVATGQVIEEKDLPGYLFGPQAQGTESSAAIS 403 Query: 640 LE-----------GEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 + E E I+ L+++NGV A AAQ +G+ + R+K+LGI Sbjct: 404 VGPQVPSDLEAALAEVEKAYILAALQQSNGVQA---AAAQLIGISERSFWYRLKKLGI 458 >UniRef50_C0Q938 Sigma-54 dependent DNA-binding response regulator n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0Q938_DESAH Length = 525 Score = 291 bits (744), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 164/389 (42%), Positives = 247/389 (63%), Gaps = 15/389 (3%) Query: 310 TMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTE 369 T +G+ + + ++ + +L+ + E A+A+ N L +QEI RL + L D+N L Sbjct: 129 TRIGLFGVLSEGKHRYSEFHSHLITLVHEPFAVAISNILQHQEIQRLNKILSDDNRYLHR 188 Query: 370 QLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRN 429 ++ ++ + IIG + V++ VE VA +DS V+I+GETGTGKE+IA AIH S R Sbjct: 189 EMMHLTGD--TIIGSKFGLKDVMRMVEHVAPTDSPVMIMGETGTGKEVIANAIHLSSRRK 246 Query: 430 NRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLEL 489 + +K+NC A+P L++S+LFGHE+GAFTGA +++ GRFE A ++FLDEVG++PL+ Sbjct: 247 DSAFIKINCGAIPDNLIDSELFGHEKGAFTGAVSRKRGRFERAHNGTIFLDEVGELPLQA 306 Query: 490 QPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHL 549 Q +LLRVLQ+ E ER+G ++ I DVR++AAT+++L++MV +FR+DL++RLNVFPIH+ Sbjct: 307 QVRLLRVLQQHEIERVGGSETIPVDVRIVAATHKNLEEMVRTGQFRADLWFRLNVFPIHI 366 Query: 550 PPLRERPEDIPLLAKAFTFKIARRLG-RNIDSIPAETLRTLSNMEWPGNVRELENVIERA 608 PPLR R D+P L F K + L R S+ T+ + EWPGNVREL+N++ERA Sbjct: 367 PPLRHRTIDLPALTDYFLEKKSMELKIRKRPSLAPGTMEKMQAYEWPGNVRELQNLVERA 426 Query: 609 VLLT--RGNVLQLSL-PDIVLPEPETPPAATVVALEGE-----DEYQL--IVRVLKETNG 658 ++ + + QL+ P ++ P P+ T+ +G+ DE I +VL +TNG Sbjct: 427 LIFNQMKNDESQLTFDPQLINPIPKE--NMTLKREDGKIIRPLDEVMANHIQKVLDQTNG 484 Query: 659 VVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 V G GAA L + TL RMK+L ID Sbjct: 485 KVEGKNGAASLLKINPGTLRGRMKKLKID 513 >UniRef50_A9G320 Sigma-54 dependent transcriptional regulator n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9G320_SORC5 Length = 492 Score = 290 bits (743), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 172/394 (43%), Positives = 228/394 (57%), Gaps = 18/394 (4%) Query: 307 SGDTMLGVLKLAQCEEKVFTTT-----------NLNLLRQIAERVAIAVDNALAYQEIHR 355 +G L V L E V T + LL + +A+A+ + Sbjct: 100 AGGEALAVFALRDAEGAVGCATMALGGGAALDVSPALLEAMGRLLAVALRQVQVLGRVAA 159 Query: 356 LKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQ-VEMVAQSDSTVLILGETGTG 414 + R E L E+L+ V E++ AM ++ +Q V +VA+ D+TVL+ GETGTG Sbjct: 160 IARRAQGEKRTLKEELDRVALPR-EVVAVGPAMRAIFQQMVPLVARQDTTVLVRGETGTG 218 Query: 415 KELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADK 474 KE+IAR IH LS R R + +NC A+P GL+ES LFGHERGAFTGA+A+ +G FE A Sbjct: 219 KEVIARRIHALSRRAERPFLAVNCGALPEGLVESALFGHERGAFTGATARHLGLFERASG 278 Query: 475 SSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREF 534 +L LDEVG++P Q KLLRVLQE E ER+G ++ VR+IAAT+R L+ MVA F Sbjct: 279 GTLLLDEVGELPRAAQAKLLRVLQEGEIERVGGEGAVRVSVRVIAATHRPLEDMVASTAF 338 Query: 535 RSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEW 594 R DLYYRL VFPI +PPLR+RPED+ L + K+A GR + AE++ L W Sbjct: 339 REDLYYRLQVFPIIVPPLRDRPEDLEPLTRVIVEKVAASFGRTPPRVSAESMARLRAHGW 398 Query: 595 PGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLK 654 PGNVRELENVIER+++++ G+ L LS P P A V E + I L+ Sbjct: 399 PGNVRELENVIERSMVMSTGDELILSAPLSA-----APGATGRVMTYREAAQRCIEDALR 453 Query: 655 ETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDK 688 G + G GAA LGLK TTL S+M++LGI K Sbjct: 454 AAGGKIYGEDGAAAALGLKPTTLQSKMRKLGIRK 487 >UniRef50_A8UFP5 Sigma54 specific transcriptional regulator with PAS sensor, Fis family protein n=1 Tax=Flavobacteriales bacterium ALC-1 RepID=A8UFP5_9FLAO Length = 616 Score = 290 bits (743), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 152/339 (44%), Positives = 227/339 (66%), Gaps = 22/339 (6%) Query: 367 LTEQLNNVDSEFGE------IIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIAR 420 LT Q ++ E E I+ M +VL V+ VA +D+TVLI GETGTGKEL++R Sbjct: 281 LTNQTQYLEDEIKELTSGYDIVAEDPKMQNVLSLVKHVAPTDATVLINGETGTGKELVSR 340 Query: 421 AIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLD 480 AIH S R+++ ++++NC A+P L+ES+LFGH++GAFTGA++ R GRF LADK ++FLD Sbjct: 341 AIHEASNRSDKPLIRINCGAIPTNLIESELFGHKKGAFTGATSDRKGRFLLADKGTIFLD 400 Query: 481 EVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYY 540 E+G+MP+ELQPKLLRV+QE EF+ +GS++ I+ +VR+IAAT+RDL + AD +FR DLYY Sbjct: 401 EIGEMPIELQPKLLRVIQEGEFDPVGSSETIKVNVRIIAATHRDLLQHAADGKFREDLYY 460 Query: 541 RLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRE 600 RLNVFPI +P LR R ED+ L+A +++L + + + L + WPGNVRE Sbjct: 461 RLNVFPIEVPALRHRAEDVCLIAGEMINHFSKKLNKPMVELSDIDKSHLMDYHWPGNVRE 520 Query: 601 LENVIERAVLLTRGNVLQLS--LPDIVLPEPETPP---------AATVVALEGEDEYQLI 649 L+N+IERA+++++ + + +P + E E PP + ++ LE E+ I Sbjct: 521 LQNLIERAIIISKSGTINIKDVIPKMQSDE-EHPPKTLKDKVYTSQELLKLEKEN----I 575 Query: 650 VRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDK 688 ++ LK+T ++G GAA+ L L TTL S++K LG+++ Sbjct: 576 LKALKQTRWKISGKNGAAELLQLPATTLASKIKVLGLER 614 >UniRef50_A5G9U3 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Deltaproteobacteria RepID=A5G9U3_GEOUR Length = 466 Score = 290 bits (742), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 171/353 (48%), Positives = 223/353 (63%), Gaps = 25/353 (7%) Query: 338 ERVAIAVDNALAYQEIHR--LKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQV 395 E + V L +Q + R K + +N +L LNN IIG S+ M S+ + + Sbjct: 109 EELETHVKRGLEHQALQRQSFKSKPCIKNRSL---LNN-------IIGESDRMLSLFEMI 158 Query: 396 EMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHER 455 E VA SDSTVLI GE+GTGKEL+ARAIH+LS R + V +NCAA+P LLES+LFGH + Sbjct: 159 EKVAGSDSTVLIQGESGTGKELVARAIHDLSNRATKNFVPVNCAAIPDDLLESELFGHVK 218 Query: 456 GAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDV 515 G+FTGA A RIGRFE+AD+ +LFLDE+GDM LQ KLLRVLQ +E E +G+ + + DV Sbjct: 219 GSFTGAVATRIGRFEMADRGTLFLDEIGDMKPNLQVKLLRVLQNKELEPVGAARTKKVDV 278 Query: 516 RLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLG 575 R+IAATN++L+ +VA + FR DLYYRL+V PI LPPLRER DIPLL F K R Sbjct: 279 RIIAATNQNLEHLVASKIFREDLYYRLSVIPITLPPLRERKTDIPLLLNNFLEKFNRNKQ 338 Query: 576 RNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLT-RGNVLQLSLPDI---VLPEPET 631 R + S T+ L N +WPGNVRELEN++ER V+L G + LP+ + P++ Sbjct: 339 RKVQSFDKNTMDILCNFDWPGNVRELENLVERLVILKGSGTITFQDLPEKYRGIKSAPKS 398 Query: 632 -----PPAATVVALEGED-EYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLL 678 P + ED E QLI++ L++T G K AA L LKRTTL+ Sbjct: 399 ERLTLPDTGFCLNSAVEDFENQLILQALEKTGG---NKKEAATLLNLKRTTLI 448 >UniRef50_C0QC42 Putative transcriptional activator n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QC42_DESAH Length = 922 Score = 289 bits (740), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 188/455 (41%), Positives = 262/455 (57%), Gaps = 28/455 (6%) Query: 242 YLDKQHP----AHEQSEVDEAGTLTERVFKSK-EMLLINLHERDDLAPYERMLFDTWGNQ 296 + DK+ P AH E D + + F+S E++ H+ L + +++ +T + Sbjct: 485 FEDKKTPRLIAAHNLFESD----INNKTFRSSLELIFKAFHDNTPLIKHCKVV-ETLVGR 539 Query: 297 IQTLCLLPLMSGDTMLGVLKLAQCE-EKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHR 355 + + +P T G+L + F+ N N L +A ++ V++ L Sbjct: 540 TKAMLAVPFEVKGTAKGILYHDNAYIDDCFSYFNKNELAGMASYLSKYVNHLL------N 593 Query: 356 LKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGK 415 L R+ ++ +L + E II +S M LKQV+ +A +DSTVLILGETG GK Sbjct: 594 LTRRIEEKTSKNYTRLGEISGE--NIIYQSLIMKKKLKQVDKIAGTDSTVLILGETGVGK 651 Query: 416 ELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKS 475 ELIAR IH S R + +V ++ ++P L+ES+LFGHE+GAFTGA QR GR ELA K Sbjct: 652 ELIARRIHERSLRKDYPLVVVDPTSIPETLIESELFGHEKGAFTGADKQRTGRVELAHKG 711 Query: 476 SLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFR 535 +LF+DEVG++PL +Q KLLR LQE+ RLG + I +D RLIAATNRDL+K VA FR Sbjct: 712 TLFIDEVGEIPLSIQVKLLRALQEKTIVRLGGSTTIHSDFRLIAATNRDLQKEVAKGNFR 771 Query: 536 SDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSI--PAETLRTLSNME 593 DL+YRLNV PI +PPLR+R EDI L+A+ F K R+ N +I E L Sbjct: 772 EDLFYRLNVIPIEIPPLRKRGEDILLIAEYFLKKF--RMKYNFPTIEFTPENKVMLIEYN 829 Query: 594 WPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGEDEYQ--LIVR 651 WPGN+REL N+IERAVLL+ + L++ L + P DE Q I Sbjct: 830 WPGNIRELNNIIERAVLLSEEDQLEIELKT---KNNSSHPDDFFRDRPSLDEMQRRYIGT 886 Query: 652 VLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 VL+E NG + GP GAA+RLG+KRT+L +RM+ LG+ Sbjct: 887 VLEECNGQIGGPGGAAERLGMKRTSLYARMRTLGM 921 >UniRef50_Q2LXW8 Nif-specific regulatory protein with sigma 54 interaction domain n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LXW8_SYNAS Length = 513 Score = 288 bits (738), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 174/398 (43%), Positives = 242/398 (60%), Gaps = 20/398 (5%) Query: 295 NQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFT-TTNLNLLRQIAERVAIAVDNALAYQEI 353 +++ LC+ P++ + ++GVL + +V L +L I+E +A +V I Sbjct: 115 SELAFLCV-PIIYDNRVVGVLSADKAARQVEDLDRELAMLSSISELIAKSV-------HI 166 Query: 354 HRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGT 413 L+E EN L L EIIG S M V + VA S++TVLI GETGT Sbjct: 167 RALEE----ENRRLRHMLGRSTVPDSEIIGHSRVMQEVFGLIAQVADSNTTVLINGETGT 222 Query: 414 GKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELAD 473 GKEL+ARAIH+ S R ++++NCAAMP L+ES+LFGHE+GAFTGA R GRFE A Sbjct: 223 GKELVARAIHDRSSRCKGPLIQVNCAAMPDTLIESELFGHEKGAFTGALHARRGRFEEAH 282 Query: 474 KSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADRE 533 ++FLDEVG++ Q KLLRV+QE++F+ LG+++++ DVR+IAATNR+L++ VA Sbjct: 283 GGTIFLDEVGELSAAAQAKLLRVIQEKKFQPLGASRVVSVDVRIIAATNRNLEEDVAVGH 342 Query: 534 FRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNME 593 FR+DLYYRLNVFPI+LPPLRER DI LLA F K + +G+++ I L + Sbjct: 343 FRADLYYRLNVFPIYLPPLRERGSDIILLADYFVLKYNKIMGKSVKRISNAVLEAFLSHS 402 Query: 594 WPGNVRELENVIERAVLLTRGNVLQ-LSLP---DIVLPEPETPPAATVVALEGEDEYQLI 649 WPGNVRELEN IERAVLL G+ ++ L LP I E E + A+ E +I Sbjct: 403 WPGNVRELENCIERAVLLATGDSIETLHLPPSLQIRSREGEKKESGKFNAMIESQERAMI 462 Query: 650 VRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 V LKE++G AA+ LG + + ++++ GID Sbjct: 463 VDALKESHG---NQSQAARILGTTKRIIQYKIQKFGID 497 >UniRef50_B3QSR6 Transcriptional regulator, NifA, Fis Family n=2 Tax=Bacteria RepID=B3QSR6_CHLT3 Length = 557 Score = 288 bits (738), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 170/384 (44%), Positives = 237/384 (61%), Gaps = 21/384 (5%) Query: 320 CEEKVFTTTNLNLLRQIAERVAIAVD-NALAYQE-IHRLKERL-------VDENLALTEQ 370 C E +++NLL IA ++ AV +A++E ++ K L N + + Sbjct: 171 CGENGMFNSDVNLLSIIAAMISQAVRLRQVAHEENLYHWKSNLQISAPEGKSHNSDVFDN 230 Query: 371 LNNVDSEFGE----IIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS 426 N++ E GE IIG +++M V K ++ +A +++TVLILGE+G GKEL+A AIH S Sbjct: 231 PNSI--EVGEQPANIIGNAKSMRVVFKMIDKIAPTNATVLILGESGVGKELVANAIHYKS 288 Query: 427 GRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMP 486 R +K NCAA+P ++ES+LFGHERGAFTGASA R GRFELA+ ++FLDEVG++ Sbjct: 289 QRAASPFIKFNCAALPESIVESELFGHERGAFTGASATRKGRFELANTGTIFLDEVGELS 348 Query: 487 LELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFP 546 L +Q KLLR+LQE+EFER+G NK I+ DVR+IAATNR+L++ + + +FR DL+YRLN+FP Sbjct: 349 LSIQAKLLRILQEKEFERVGGNKTIKADVRIIAATNRNLEEEIQEGKFREDLFYRLNIFP 408 Query: 547 IHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIE 606 + +PPLRER DI LLA F K + G+ + I + L WPGNVRELEN +E Sbjct: 409 VTVPPLRERKSDILLLADYFVEKYNQMNGKGVRRISTTAIDMLMRYHWPGNVRELENCVE 468 Query: 607 RAVLLTRGNVLQ-LSLPDIV--LPEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGP 663 RAV+L+ V+ LP + TP A + EY+LIV LK T G ++ Sbjct: 469 RAVILSDDGVIHGYHLPPTLQTAESSGTPCAGPLQQRLDALEYELIVEALKNTKGNMS-- 526 Query: 664 KGAAQRLGLKRTTLLSRMKRLGID 687 AA LGL + R+K+ ID Sbjct: 527 -KAAMELGLTDRVMGLRVKKFDID 549 >UniRef50_Q2LSK2 Sigma-54 dependent transcriptional regulator n=4 Tax=Bacteria RepID=Q2LSK2_SYNAS Length = 472 Score = 288 bits (737), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 162/358 (45%), Positives = 227/358 (63%), Gaps = 22/358 (6%) Query: 340 VAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVA 399 V + V+ AL+Y + +EN+ L + L +FG+++G SE M ++ +E VA Sbjct: 122 VTLTVNRALSYASLQ-------EENVTLRDHLRE-QYDFGKMLGYSECMKTIFDTIEKVA 173 Query: 400 QSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFT 459 +SDSTV+I GE+GTGKEL+ARAIH S RNN ++ +NC A+P LLES+LFGHE+GAFT Sbjct: 174 KSDSTVIIYGESGTGKELVARAIHFNSNRNNFPLIPVNCGAIPEDLLESELFGHEKGAFT 233 Query: 460 GASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIA 519 GA R+GRFELA S+FLDE+GDM LQ K+LRV+QE++FER+G K I DVR+IA Sbjct: 234 GAIRNRLGRFELAQGGSIFLDEIGDMSPALQVKVLRVIQEKQFERIGGVKTINADVRIIA 293 Query: 520 ATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNID 579 AT+++L+ V ++ FR DL+YR+NV PIHLP LRER DI +LA F K A+ + + Sbjct: 294 ATHQNLELAVTEKRFREDLFYRINVIPIHLPALRERGADIAILANHFLQKFAQSKKKEVT 353 Query: 580 SIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQL-SLPDIVLP-EPETPPAATV 637 E + + + WPGNVRELEN+IE V++ ++L LP + + ET Sbjct: 354 RFTPEAIACMLHYPWPGNVRELENLIEMLVVMKEDGEIKLEDLPSKIRQFKKETQSFKEY 413 Query: 638 -VALEGED--------EYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 + EG D E ++++ L +TNGV AA+ L L RTTL+ ++KRL I Sbjct: 414 QIPEEGIDFNDVVYQFEKNILLKALAKTNGV---KNRAAKLLNLNRTTLVEKLKRLNI 468 >UniRef50_A7HIM1 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Myxococcales RepID=A7HIM1_ANADF Length = 495 Score = 288 bits (736), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 155/320 (48%), Positives = 217/320 (67%), Gaps = 16/320 (5%) Query: 381 IIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAA 440 ++G SE M VL QV VA + +TVL+LGE+GTGKEL+ARAIH+ S R + V ++CAA Sbjct: 175 LVGSSEPMRRVLDQVRKVASTGATVLVLGESGTGKELVARAIHDASPRREQPFVSISCAA 234 Query: 441 MPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQ 500 +P GLLES+LFGHE+GAFTGA +++GRFELA+ +LFLDEVG++P +Q KLLRVLQE+ Sbjct: 235 IPEGLLESELFGHEKGAFTGAIRRKLGRFELANGGTLFLDEVGEIPHAVQVKLLRVLQER 294 Query: 501 EFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIP 560 +FER+G + ++ DVR+++ATNR+L +MV FR DLYYRLNV PI LPPLR+RP D+ Sbjct: 295 QFERVGGEETVEVDVRVVSATNRNLAQMVESGRFREDLYYRLNVVPILLPPLRDRPGDVE 354 Query: 561 LLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQ-L 619 LA+ F ++A R+ R + + E L L WPGNVRELENVIE+A++ G +++ Sbjct: 355 ELARFFVARLAPRMSRAVTGLAPEALELLRRHRWPGNVRELENVIEQALVFAEGELVRPR 414 Query: 620 SLPDIVLPEPETPPAATVVALEG--------ED-EYQLIVRVLKETNGVVAGPKGAAQRL 670 LP+ V + PPA ++ G ED E QLI+ ++ GV A A+ L Sbjct: 415 DLPEGVR---KAPPAPSLPVPSGDRSLTDILEDLERQLILAAYEKARGVKA---ETARLL 468 Query: 671 GLKRTTLLSRMKRLGIDKSA 690 G+K + L ++++ GI K+ Sbjct: 469 GIKPSALYYKLEKYGIVKAG 488 >UniRef50_Q7M8U4 TRANSCRIPTIONAL REGULATOR (NIFA FAMILY) n=1 Tax=Wolinella succinogenes RepID=Q7M8U4_WOLSU Length = 512 Score = 288 bits (736), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 186/479 (38%), Positives = 276/479 (57%), Gaps = 29/479 (6%) Query: 217 YFDIDDISIVLRSHRKNKLNIYSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLI-N 275 +F +D S LN++++ L K+ +V E T K++E +++ N Sbjct: 49 HFFLDKSVYYELSEESQTLNVFASAGLSKEQEFLASYKVGEGATGL--AAKAREPIIVEN 106 Query: 276 LHERDDLAPYERMLFDTWGNQIQ---TLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNL 332 +H+ + + G++ + + +P +S + +LGVL ++ + + + Sbjct: 107 IHQN-------LLFLNKSGSRNEGEISYLAVPALSQERILGVLGVSLTKHSMSDFDEMVT 159 Query: 333 LRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVL 392 + IA ++ +Q IH K+R+ +E L E+L EIIG S + V Sbjct: 160 ILTIA--ASLMAQARRIHQSIHEEKKRISEEKLYYKEELLKQS----EIIGYSPPIKRVS 213 Query: 393 KQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFG 452 + + +A S +TVLI GETGTGKELIA+AIHN S R + +K+NCAA+P LLES+LFG Sbjct: 214 EIIAKIAPSSATVLIRGETGTGKELIAKAIHNYSPRKEKPYIKLNCAAIPENLLESELFG 273 Query: 453 HERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQ 512 HE+GAFT A R GRFELAD +LFLDEVGD+ L LQ K+LR+LQEQEFER+G +K I+ Sbjct: 274 HEKGAFTDARETRKGRFELADGGTLFLDEVGDLSLPLQAKILRILQEQEFERVGGSKTIK 333 Query: 513 TDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIAR 572 DVR++AATNRDL++MV +FR DL+YRLNV PI PPLR+R +D+ LL++ F + + Sbjct: 334 VDVRIVAATNRDLEEMVRMGDFREDLFYRLNVIPIFSPPLRDRGDDVILLSRYFLERFCK 393 Query: 573 RLGRNIDSIP-AETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLP---E 628 R + + P AE L L + +WPGN+RELEN IER VLL + + VLP Sbjct: 394 RHAKELHLTPKAEEL--LKHYDWPGNIRELENSIERLVLLAPSESIDEEVVLSVLPGRVH 451 Query: 629 PETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 T T LE E E I++ LKE +G+ AA++LG+ + ++++ I+ Sbjct: 452 GYTKEVKTRADLE-ELERSAIIKALKECHGIKL---QAAKKLGITNRQIGYKIQKYEIE 506 >UniRef50_C8W392 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W392_DESAS Length = 459 Score = 288 bits (736), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 160/352 (45%), Positives = 219/352 (62%), Gaps = 23/352 (6%) Query: 347 ALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVL 406 LA Q+ ++ +RLV E L E+L+ IG+S M V K + V SD TVL Sbjct: 110 VLAVQKSIKM-QRLVSEVAILREELDQETDSVDSFIGQSRHMQDVFKTIGKVVDSDITVL 168 Query: 407 ILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRI 466 I GE+GTGKE++AR IH+ S R++R +K+NCA +P L+ES+LFGHE+G+FTGA +Q+ Sbjct: 169 IQGESGTGKEVVARTIHSNSRRSSRPFIKINCATIPEQLMESELFGHEKGSFTGAVSQKA 228 Query: 467 GRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLK 526 G+FE+A +FLDE+G++PL Q KLLRVLQE+EFER+G K I+ DVR++AATNR+L+ Sbjct: 229 GKFEIAHNGIVFLDEIGELPLHTQAKLLRVLQEKEFERVGGTKSIEVDVRILAATNRNLE 288 Query: 527 KMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETL 586 MV + +FR DLYYRLNV + LPPLRER EDI LL F K AR+ +NI I E + Sbjct: 289 DMVQEGKFREDLYYRLNVVNVKLPPLRERKEDISLLINYFVKKFARKYNKNISGISQEAM 348 Query: 587 RTLSNMEWPGNVRELENVIERAVLLTRGNVLQL-SLP---------------DIVLPEPE 630 WPGNVRE++NV E+AV++ R +VL L +P I L + Sbjct: 349 IFAEKYAWPGNVREIKNVCEQAVVMARNSVLMLDDMPLIGNGNGFLEFKNNAKISLDTND 408 Query: 631 TPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMK 682 +VA E E Q+I++ L E N + A+ LGL R +L ++MK Sbjct: 409 KRSLKDIVA---EVEKQVILKSLNENNW---NRQNTAKALGLNRRSLYAKMK 454 >UniRef50_A6EHC5 Two component, sigma54 specific, transcriptional regulator, Fis family protein n=1 Tax=Pedobacter sp. BAL39 RepID=A6EHC5_9SPHI Length = 446 Score = 287 bits (734), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 154/311 (49%), Positives = 212/311 (68%), Gaps = 5/311 (1%) Query: 378 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMN 437 F ++IG S A++ + Q+ VA +D+ VLI GE+GTGKE+IAR +H LSGR+ +M+ +N Sbjct: 137 FSDMIGGSPALHKLQDQLMAVAPTDTAVLITGESGTGKEIIARHLHRLSGRSKEQMIAVN 196 Query: 438 CAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVL 497 CAA+PA L+ES LFGHE+GAFT A +IG+FE A +LFLDE+G+MP +LQ KLLRVL Sbjct: 197 CAALPAELIESILFGHEKGAFTDAVQTKIGKFEEASGGTLFLDEIGEMPFDLQAKLLRVL 256 Query: 498 QEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPE 557 QEQE ER+G ++ I D+R+IAATN L++ +A FR DL+YRLNVFP+ +P LRER Sbjct: 257 QEQEIERVGGSRPIPVDLRIIAATNLQLEREIARGRFRLDLFYRLNVFPLQVPSLRERRT 316 Query: 558 DIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVL 617 DIPLL F K A + GR ID + L +WPGN+RELE+V+ R++LL+R +L Sbjct: 317 DIPLLVAHFIQKHATKAGRQIDGTTDGFMAQLMRYDWPGNIRELEHVLLRSILLSRTGML 376 Query: 618 QLSLPDIVLPE--PETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRT 675 + L ++ L + E+P +A E+E IV VL+ +AG GAA LG+ T Sbjct: 377 EEGLLELKLDDVSGESPAVVKTIA---ENERDHIVEVLQRCKWKIAGAGGAADLLGIPPT 433 Query: 676 TLLSRMKRLGI 686 TL S+M++LGI Sbjct: 434 TLNSKMRKLGI 444 >UniRef50_B2S230 Formate hydrogenlyase transcriptional activator FhlA n=3 Tax=Treponema RepID=B2S230_TREPS Length = 600 Score = 287 bits (734), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 186/473 (39%), Positives = 256/473 (54%), Gaps = 70/473 (14%) Query: 274 INLHERDDLA-------PYERMLFDTWGNQIQTL-----------CLL-PLMSGDTMLGV 314 I+L +R DLA PY LFD T CL+ PL DT +G+ Sbjct: 138 IDLTKRQDLARILSQKSPY---LFDPTLAHTDTYTELIPMPQNHSCLIAPLYIDDTPIGM 194 Query: 315 LKLAQ--CEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLN 372 L L CE+ FT + + +++ +++AV A + + + L+ E AL L Sbjct: 195 LTLDHRLCEQ--FTPDVVRFITTLSKLISLAVAQTDASETLSQKSHALLTERNAL---LA 249 Query: 373 NVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRR 432 F +IG S A L +++VA SD VL+ GETGTGKEL+AR +H LS R+++ Sbjct: 250 PQSPAFKNMIGTSPAWTRTLDAIKLVAASDLPVLVCGETGTGKELVARTVHQLSTRSDKP 309 Query: 433 MVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPK 492 V +NC+A+ L ES+LFGHE+GAF+GA GRFELA +LFLDEVGD+PLELQPK Sbjct: 310 FVPVNCSALVHSLAESELFGHEKGAFSGAVGTHRGRFELAHGGTLFLDEVGDLPLELQPK 369 Query: 493 LLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPL 552 LLRVLQ+ FER+G + + VR+IAATN +L + V +FR DL YRL+VFP+ LPPL Sbjct: 370 LLRVLQDGVFERVGGERSVSVSVRIIAATNINLSEAVTQGKFREDLLYRLDVFPLSLPPL 429 Query: 553 RERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLT 612 RER ED+ LLA+ F KI R G + + + ++ +PGNVREL N++ERA LL Sbjct: 430 RERAEDVALLAEHFIQKIKTRPGFERTQLSPSAFKKIFSLTFPGNVRELRNLLERAALLA 489 Query: 613 RGNVLQLSLPDIVLPEPETPPAATVVALE----------------------------GED 644 RG+ + +V PE+ TV E ++ Sbjct: 490 RGDTIGAE--HLVCRTPESGTQTTVYPREHTEVSESVQPAIPLCIRDSSCMVRCTQGKKE 547 Query: 645 EYQLIVRV-----------LKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 E L+V L +NG + G GAA+ LGLK +TL S+MK+LG+ Sbjct: 548 ETTLVVNFHQAQRAAIQAALDASNGKIYGANGAAEILGLKPSTLQSKMKKLGL 600 >UniRef50_Q73KY8 Sigma-54 dependent transcriptional regulator, putative n=1 Tax=Treponema denticola RepID=Q73KY8_TREDE Length = 505 Score = 287 bits (734), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 171/404 (42%), Positives = 244/404 (60%), Gaps = 27/404 (6%) Query: 294 GNQIQTLCLLPLMSGDTMLGVLK-LAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQE 352 G + + + +P+ D +GV++ L + EEK F + +LN+L A + AIA NA Y Sbjct: 115 GYKNRNMIAVPMRIKDECIGVIEVLNKREEKDFDSDDLNVLELFATQTAIAYQNAKHY-- 172 Query: 353 IHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETG 412 E+ +E + L +QL D + I +S+ M L+ +A SD++VLILGE+G Sbjct: 173 -----EKSREEIICLQDQLEQ-DRGYHTFIAKSKVMNEKLELCRNIAASDASVLILGESG 226 Query: 413 TGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELA 472 GKELIA +H S R N +++NCAA+P GLLES+LFGH RGAFT A + R GRFELA Sbjct: 227 VGKELIAEQLHLNSRRVNNPFIRVNCAALPEGLLESELFGHVRGAFTDAISDRKGRFELA 286 Query: 473 DKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADR 532 DK ++FLDE+GD+PL LQ KLLRVLQE FER+GSNK + D R+IAATN++++++V Sbjct: 287 DKGTIFLDEIGDIPLTLQTKLLRVLQEMAFERVGSNKTLTVDTRIIAATNKNIEELVRQG 346 Query: 533 EFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNM 592 +FRSDLYYRLNV PI++PPLR R +DI LA F K ++ + + + + ++ Sbjct: 347 KFRSDLYYRLNVLPIYIPPLRNRKDDIQELAHFFLKKFSKEVKKPFLGFSPDAEKLINAY 406 Query: 593 EWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLP------EPE----TPPAATVVALEG 642 WPGN+RELEN +ERA +L G + D++L EPE P + V Sbjct: 407 SWPGNIRELENAVERACVL--GKPPYIEEKDLLLKFESSSFEPEVNYSNPDLKSAV---N 461 Query: 643 EDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 + + IV++L E AA++LG++RT L +K L I Sbjct: 462 DFKKSFIVKILNEHKW---NQTAAAEKLGIQRTYLSRLIKELEI 502 >UniRef50_B8IZ98 Transcriptional regulator, NifA subfamily, Fis Family n=2 Tax=Desulfovibrio RepID=B8IZ98_DESDA Length = 554 Score = 287 bits (734), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 166/397 (41%), Positives = 238/397 (59%), Gaps = 23/397 (5%) Query: 304 PLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDE 363 PL+ LGV+ A + +LR +A+ +A A+ NA ++ + +R E Sbjct: 143 PLVCRGETLGVI--AFFSRDTLAQGAMEMLRMVADHIAYAITNARLFEITRSITQRRELE 200 Query: 364 NLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIH 423 N L E+L +F IIG+S A+ ++ +Q+ +V+++++TVLI G +GTGKEL+A +H Sbjct: 201 NAHLREELYEA-RQFTGIIGKSAAIKAIREQILVVSETEATVLIQGASGTGKELVAHELH 259 Query: 424 NLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVG 483 S R N +K+NCAA+P L ES+ FGH +GAFTGA R+G F+LAD +LFLDE+ Sbjct: 260 KNSKRKNNPFIKINCAAIPHHLFESEFFGHVKGAFTGAIHDRMGFFQLADGGTLFLDEIA 319 Query: 484 DMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLN 543 ++PLELQ KLLRVLQE EF R+G K TD+RLIAATN+DLK + R FR DLYYRL Sbjct: 320 EIPLELQGKLLRVLQEGEFRRVGEEKNRHTDIRLIAATNKDLKAAIRKRTFRDDLYYRLQ 379 Query: 544 VFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELEN 603 VFP+ +P L+ER EDIPLL + F R+ GR + +P + L +WPGN+REL+N Sbjct: 380 VFPLTVPTLKEREEDIPLLVRHFIRIFCRKNGRRVFDVPEAQMNRLRQYDWPGNIRELQN 439 Query: 604 VIERAVLLTRGN--VLQLSLPDIVLPE--------------PETPPAATVVALEGEDEYQ 647 +ER V+ R + L+L + PE P+ + LE ++ Sbjct: 440 FVERMVITGRPEQALAYLALCEAASPEAEEAAPELCASFGIPKILTEKQMRQLEKDN--- 496 Query: 648 LIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRL 684 + L+ TN ++ G +GAA LG+K TTL+SR+KR Sbjct: 497 -MKAALERTNWLIYGNRGAAALLGMKPTTLISRLKRF 532 >UniRef50_UPI00016C4268 cetoacetate metabolism regulatory protein atoC n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C4268 Length = 475 Score = 286 bits (733), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 165/336 (49%), Positives = 207/336 (61%), Gaps = 30/336 (8%) Query: 375 DSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMV 434 D G IIG AM V K V VA D VLI GE+GTGKEL+ARA+H S R R V Sbjct: 136 DGGTGPIIGSCPAMMEVYKAVGRVAPQDVPVLITGESGTGKELVARAVHQYSRRAGRPFV 195 Query: 435 KMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLL 494 +NCAA+P LLES+LFGHE+GAFTGA +RIGRFE D +LFLDE+GDMPL LQ KLL Sbjct: 196 ALNCAAIPEQLLESELFGHEKGAFTGADRRRIGRFEQCDGGTLFLDEIGDMPLALQSKLL 255 Query: 495 RVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRE 554 RVLQEQ FER+G + ++TDVR+I+AT+RDLK A FR DLYYRL VF + LPPLR+ Sbjct: 256 RVLQEQAFERVGGGETVRTDVRIISATHRDLKARAAAGTFRPDLYYRLGVFTMRLPPLRD 315 Query: 555 RPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRG 614 R ED+PLL + F + R LGR + I AE L L+ WPGN+REL++V+++A+L T G Sbjct: 316 RAEDLPLLVRHFLGRFNRELGRRVSDISAEALARLTQYAWPGNLRELQSVLKQALLRTTG 375 Query: 615 NVLQLS-LPDIVLPE--PETPPAATVVALEGEDEYQLIVRVLKETNG------------- 658 VL S L D+ P P + P A D +Q + R L + + Sbjct: 376 TVLLPSALADMAGPSAAPASEPPARA------DLHQFVRRRLSDGSENLLEEARLELDRF 429 Query: 659 ----VVAGPKG----AAQRLGLKRTTLLSRMKRLGI 686 V+ +G AA+ LG+ R TL R+ LGI Sbjct: 430 LLPMVMELTRGNQVRAARVLGVARLTLRRRLHELGI 465 >UniRef50_A7HI74 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Anaeromyxobacter RepID=A7HI74_ANADF Length = 660 Score = 286 bits (733), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 164/323 (50%), Positives = 210/323 (65%), Gaps = 15/323 (4%) Query: 378 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMN 437 F EI+GRS A+ L+ V VA +++TVL++GETGTGKEL ARAIH+ S R R +VK+N Sbjct: 324 FHEILGRSPALRRALQDVTQVAATEATVLLVGETGTGKELFARAIHDRSARRARPLVKVN 383 Query: 438 CAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVL 497 CAA+PA L+ES+ FGHERGAFTGA+ +R GRF LAD ++FLDE+G++PLELQ KLLRVL Sbjct: 384 CAAIPATLIESEFFGHERGAFTGATQRRDGRFALADGGTIFLDEIGELPLELQGKLLRVL 443 Query: 498 QEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPE 557 QE EFE +G+++ + DVR++AATNRDL++ + FR DLYYRL+VFPI LPPLRER + Sbjct: 444 QEGEFEPVGASRTRRVDVRVVAATNRDLQRAAREGTFRQDLYYRLSVFPIQLPPLRERGD 503 Query: 558 DIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVL 617 D+ LLA A K+A LGR + A L + WPGNVREL NV+ERA++ + L Sbjct: 504 DVVLLAAAMAEKLAPGLGRRVAPPDAADAAALRSYPWPGNVRELRNVVERAIITSTDGRL 563 Query: 618 QLSLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKE------------TNGVVAGPKG 665 L LP P PA+ D L R L+E T V G G Sbjct: 564 NLHR---CLPAPAVAPASEPAPATRGDPEVLTDRRLRELERDNLLAALERTRWRVGGKDG 620 Query: 666 AAQRLGLKRTTLLSRMKRLGIDK 688 AA L + +TL SRMK LGI + Sbjct: 621 AAALLSVSPSTLKSRMKALGIAR 643 >UniRef50_Q2RHS4 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Bacteria RepID=Q2RHS4_MOOTA Length = 748 Score = 286 bits (732), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 167/354 (47%), Positives = 224/354 (63%), Gaps = 16/354 (4%) Query: 341 AIAVDNALAYQE--IHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMV 398 A+AV + LA + +L N L ++L +FG+++G S AM V + +E V Sbjct: 387 AVAVYHGLAENRMCLPYFIAQLEKSNFHLRQELKAFQGKFGQLVGNSAAMQEVYRLIEKV 446 Query: 399 AQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAF 458 A++D+TVLI GE+GTGKEL+ARAIH S R+ V +NCAA+P LLES+LFGH RGAF Sbjct: 447 AKTDATVLIRGESGTGKELVARAIHYHSRRSEAPFVSINCAALPETLLESELFGHARGAF 506 Query: 459 TGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLI 518 TGA + G FE A++ ++FLDE+GD+ L LQ KLLRVLQE EF R+G + + +VR++ Sbjct: 507 TGAVTAKKGLFEEANEGTIFLDEIGDISLGLQSKLLRVLQEGEFLRVGETRPTRVNVRVL 566 Query: 519 AATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNI 578 AATNRDL+K V D FR +L YRLNV I LPPLRER +DIPLLA+ F K +RLG+ + Sbjct: 567 AATNRDLEKAVKDGAFRPELLYRLNVITIWLPPLRERRDDIPLLARHFLEKSCQRLGKEV 626 Query: 579 DSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVV 638 + E + L +WPGNVRELENVIERAV+LT ++L D+ A+ Sbjct: 627 NGFTHEAMDALIRADWPGNVRELENVIERAVILTESKRIELG--DLPRQFRNMAAGASGW 684 Query: 639 ALE---------GEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKR 683 A E +LI++ L+E+ GV A AA+ LGLKR+TL +KR Sbjct: 685 AFTRGMSFKEAVAAYESRLILQALEESQGVQA---RAAEILGLKRSTLNEMIKR 735 >UniRef50_A4J616 Two component, sigma54 specific, transcriptional regulator, Fis family n=10 Tax=Bacteria RepID=A4J616_DESRM Length = 454 Score = 286 bits (732), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 153/322 (47%), Positives = 219/322 (68%), Gaps = 16/322 (4%) Query: 372 NNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNR 431 + ++ ++G+I+G S+A++ V +E VA S++TVL+ GE+GTGKE+ A +IH LS R ++ Sbjct: 134 SELNKKYGQIVGNSQAIHDVCGLIEKVADSNATVLVTGESGTGKEITALSIHQLSSRRDK 193 Query: 432 RMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQP 491 V +NCAA+P LLES+LFGHE+GAFTGA A+++GRFELA++ +LFLDE+ +MPL +Q Sbjct: 194 PFVPINCAALPESLLESELFGHEKGAFTGAVARKLGRFELANQGTLFLDEITEMPLSMQV 253 Query: 492 KLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPP 551 KLLRVLQE+EFER+G I+ DVR+IAATNRD + + FR DL+YRLNV PIHLPP Sbjct: 254 KLLRVLQEKEFERVGGTDSIKIDVRVIAATNRDPMECIRKGTFREDLFYRLNVLPIHLPP 313 Query: 552 LRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLL 611 LRER EDIPLLA F K + + E + L + EWPGN+REL+NVIER+++L Sbjct: 314 LRERTEDIPLLAMHFIKKFNPSQEQRMS---PEAMGLLISYEWPGNIRELQNVIERSIIL 370 Query: 612 TRGNVLQ-LSLPDIV--LPEPETPPAATVVALEGED-------EYQLIVRVLKETNGVVA 661 +GN ++ LP + L E + ++ +D E +LI++ L+++NG Sbjct: 371 AQGNEIKPHHLPKEIQKLDEVKNETTHGLIINFPDDGISFDEVEKELILKALEKSNG--- 427 Query: 662 GPKGAAQRLGLKRTTLLSRMKR 683 AAQ LG+ R+ LL R ++ Sbjct: 428 NQTRAAQLLGITRSALLYRAQK 449 >UniRef50_D2QRC3 Sigma 54 interacting domain protein n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QRC3_9SPHI Length = 657 Score = 285 bits (729), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 149/322 (46%), Positives = 211/322 (65%), Gaps = 8/322 (2%) Query: 377 EFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKM 436 +F IIG + + L V VA +++VLILGE+GTGKE IA+AIH+LS R +K+ Sbjct: 334 KFKGIIGNHPLLLAALDLVTQVAPYNTSVLILGESGTGKESIAQAIHSLSVRKTGPFIKV 393 Query: 437 NCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRV 496 NCAA+PA L+ES+LFGHE+GAFTGA +R G+FE + + +LFLDE+G+MPL++Q +LLRV Sbjct: 394 NCAAIPAALIESELFGHEKGAFTGAIEKRKGKFEQSHEGTLFLDEIGEMPLDMQVRLLRV 453 Query: 497 LQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERP 556 LQE+E + +G + DVR++AATNR+L++ VA+ FR DLYYRLNVFPI LPPLRER Sbjct: 454 LQEKEIDPVGGKSPKKVDVRVVAATNRNLEREVAEGRFRLDLYYRLNVFPITLPPLRERK 513 Query: 557 EDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNV 616 DI L+ + + ++ + I A + L WPGN+RELENV+ER+V+L G Sbjct: 514 SDIQALSVYVANRFCKEFSKDFNGISAGMMDELEGYTWPGNIRELENVLERSVILNDGQS 573 Query: 617 LQLSLPDIVLPEPETPPAATVVALEG-------EDEYQLIVRVLKETNGVVAGPKGAAQR 669 +L L +L + P+ + G E E + ++ VLK T G++ G GAA+ Sbjct: 574 -ELELKQSLLGTTDKVPSKVAIETLGDVRRIQRETEREYLISVLKNTKGLIRGANGAAEL 632 Query: 670 LGLKRTTLLSRMKRLGIDKSAL 691 L +K TTL +R+ +LGI + L Sbjct: 633 LHIKPTTLEARLAKLGIQREDL 654 >UniRef50_B3E7V2 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Desulfuromonadales RepID=B3E7V2_GEOLS Length = 466 Score = 285 bits (729), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 172/388 (44%), Positives = 228/388 (58%), Gaps = 39/388 (10%) Query: 317 LAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIH-RLKERLVDENLALTEQLNNVD 375 L E +F LNL + + V AL YQ + R+ E+ VDE Sbjct: 91 LPHDERLIFLPKPLNL-----DELESVVMRALEYQALKVRMPEQPVDEYPHFL------- 138 Query: 376 SEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVK 435 IIGRS M ++ + +E VA+S +TVLI GE+GTGKEL ARAIH LS R+++ V Sbjct: 139 --CSTIIGRSRQMLNLFEMIEKVAESSATVLIQGESGTGKELAARAIHQLSSRSSKNFVP 196 Query: 436 MNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLR 495 +NCAA+P LLES+LFGH +G+FTGA A RIGRFE+ADK +LFLDE+GDM LQ KLLR Sbjct: 197 VNCAAIPDDLLESELFGHVKGSFTGAYANRIGRFEMADKGTLFLDEIGDMKATLQVKLLR 256 Query: 496 VLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRER 555 VLQ +EFE +GS + + DVR+IAA+N++L + VA R+FR DLYYRL+V PI +PPLR+R Sbjct: 257 VLQAKEFEPVGSTRSQKVDVRIIAASNKNLDEQVATRDFREDLYYRLSVIPITIPPLRDR 316 Query: 556 PEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGN 615 EDIPLL F + R R + E L L N +WPGNVRELEN++ER + + Sbjct: 317 REDIPLLINHFQGQFNRDRRRLVKGFTREALEMLCNYDWPGNVRELENLVERMITMKESG 376 Query: 616 VLQLS-------LPDIVLPEP-----------ETPPAATVVALEGEDEYQ--LIVRVLKE 655 + + P V+ P E PP + D ++ LI++ L Sbjct: 377 FITVDDLPEKYLAPRTVVAPPLSVSGSVPVGKELPPEGICLN-SAVDAFENGLIMQALHR 435 Query: 656 TNGVVAGPKGAAQRLGLKRTTLLSRMKR 683 T G K AA L LKRTTL+ ++K+ Sbjct: 436 TGG---NKKEAAALLNLKRTTLIEKLKK 460 >UniRef50_B3DYD7 DNA-binding response regulator, NtrC family (Contains REC, AAA-type ATPase, and DNA-binding Fis domains) n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DYD7_METI4 Length = 486 Score = 284 bits (726), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 143/253 (56%), Positives = 180/253 (71%), Gaps = 1/253 (0%) Query: 372 NNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNR 431 N DS IIG+S M V K + VA +++TVLI+GE+G+GKEL+ARAI+ S R N+ Sbjct: 153 NAFDSRSLHIIGKSAPMQQVYKLIGQVAPTNATVLIVGESGSGKELVARAIYQYSLRANK 212 Query: 432 RMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQP 491 + +NCAA+P LLES+LFGHERG+FTGA AQRIG+FE D ++FLDE+G+MP+ Q Sbjct: 213 PFIAINCAAIPENLLESELFGHERGSFTGAMAQRIGKFEQGDGGTVFLDEIGEMPISTQA 272 Query: 492 KLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPP 551 K+LRVLQE EF RLGSN+ I+TDVR+IAATN+DL VA REFR+DL+YRLNV I LPP Sbjct: 273 KILRVLQEGEFSRLGSNEPIKTDVRIIAATNKDLAAAVAKREFRADLFYRLNVVKISLPP 332 Query: 552 LRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERA-VL 610 LRER EDIP L F K R L I ++ +R+L WPGN+RELENVI+RA VL Sbjct: 333 LRERVEDIPDLIDHFLAKHRRYLPNAPTCISSQAMRSLLAYHWPGNIRELENVIQRAMVL 392 Query: 611 LTRGNVLQLSLPD 623 T + LP+ Sbjct: 393 ATSATIQNCHLPE 405 >UniRef50_Q3J8M6 Sigma-54 specific, transcriptional regulator, Fis family n=6 Tax=Gammaproteobacteria RepID=Q3J8M6_NITOC Length = 479 Score = 283 bits (723), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 161/336 (47%), Positives = 212/336 (63%), Gaps = 29/336 (8%) Query: 378 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMN 437 F ++G S A +V +E VA S++TVLILGE+GTGKE++AR +H S R V +N Sbjct: 141 FRSLVGNSRATRTVRHLIEQVADSNATVLILGESGTGKEVVARNLHYHSSRRGNPFVPVN 200 Query: 438 CAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVL 497 C A+P LLES+LFGHE+GAFTGA R GRFELA K +LFLDE+GDMP+ +Q KLLRVL Sbjct: 201 CGAIPGELLESELFGHEKGAFTGAITARQGRFELAQKGTLFLDEIGDMPMAMQVKLLRVL 260 Query: 498 QEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPE 557 QE+ FER+GSNK+I DVR+IAAT+R+L++ + + FR DLYYRLNVFPI +PPLRER E Sbjct: 261 QERTFERVGSNKLIHVDVRIIAATHRNLEEQLQEGNFREDLYYRLNVFPIEMPPLRERVE 320 Query: 558 DIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIER-AVLLTRGNV 616 DIPLL +I G ++ PA + L WPGNVREL N++ER +L G V Sbjct: 321 DIPLLINEIITRIEHEKGASVRLTPAAVM-ALCQYPWPGNVRELANLVERLTILHPYGVV 379 Query: 617 LQLSLPDIVLPEPE--TPPAATVVAL--------------EGED--------EYQLIVRV 652 LP+ E E +P A + +L EG D E LI + Sbjct: 380 DHYDLPEKYRIEGEGISPSAPELASLERVVDTLETPRLPREGLDLKKHLSCIERSLIKQA 439 Query: 653 LKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDK 688 L+E +GVVA AA RL ++RTTL+ ++++ I + Sbjct: 440 LEEADGVVA---QAAHRLRMRRTTLVEKLRKYDIQR 472 >UniRef50_C6HY50 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HY50_9BACT Length = 477 Score = 283 bits (723), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 155/314 (49%), Positives = 209/314 (66%), Gaps = 10/314 (3%) Query: 378 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMN 437 FG+IIG+SE M + + +VAQS STVLI GE+GTGKELIA AIH S R + +K+N Sbjct: 165 FGKIIGQSEKMRELFDLLPVVAQSKSTVLIEGESGTGKELIAHAIHENSPRKDGPFIKVN 224 Query: 438 CAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVL 497 CAA+ G+LES+LFGH RGAFTGA + + GRFELA +LFLDE+G++ +Q KLLRVL Sbjct: 225 CAALSEGVLESELFGHVRGAFTGAVSSKPGRFELASGGTLFLDEIGEISASMQVKLLRVL 284 Query: 498 QEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPE 557 QE+EFER+G K ++ DVR+IAATNRDLK + FR DLYYRL V P+ LPPLRER E Sbjct: 285 QEEEFERVGGTKTLKVDVRVIAATNRDLKAAIDAGTFRRDLYYRLRVVPLFLPPLRERRE 344 Query: 558 DIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVL 617 DIPLL +F + G+N+ + E L N +PGN+REL+N+IE AVLL+ G + Sbjct: 345 DIPLLISSFLSRYNAEFGKNVVGLSQEAQNILMNHSYPGNIRELQNIIEHAVLLSTGRTI 404 Query: 618 QL-SLPDIVLPEPETPPAATVVALEGED-----EYQLIVRVLKETNGVVAGPKGAAQRLG 671 + LP + P PE A VAL + E +I + +++T G ++ AA+ LG Sbjct: 405 GVRELPRDLAPIPEESSFAD-VALSRSNALRTMEDVMIRKAVEKTQGNMS---QAAKLLG 460 Query: 672 LKRTTLLSRMKRLG 685 + R+TL +++ +G Sbjct: 461 IGRSTLWRKLREMG 474 >UniRef50_B8FMY7 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FMY7_DESAA Length = 525 Score = 282 bits (721), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 175/442 (39%), Positives = 253/442 (57%), Gaps = 34/442 (7%) Query: 262 TERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCE 321 T +S+ + I + R + P L G ++ + G V A Sbjct: 86 TRDFLRSQTLPDIRIINRPEQDPISETLLAFTGRNYSSISMFLKREGKRFGSVTVAAHGR 145 Query: 322 EKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEI 381 ++ +T +L L + ++AV L QE+ +LK ++D+ L L ++ + EI Sbjct: 146 DR-YTQEDLELFSLLKTPFSMAVGALLLTQEVSKLKS-ILDDRLELQKKRITPN----EI 199 Query: 382 IGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAM 441 IGR++ + V+K + ++A ++ VLI GETG GKELIA AIH++S R + ++ +NC A+ Sbjct: 200 IGRNQGLRDVVKMINLIAPQNTPVLINGETGVGKELIANAIHSMSPRKDGPLIIVNCGAI 259 Query: 442 PAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQE 501 P L+ES+LFGHE GAFTGA+ +R GRFE A ++FLDE+G++ ++Q KLLRVLQ QE Sbjct: 260 PQTLVESELFGHEAGAFTGAAERRKGRFERAHHGTIFLDEIGELKPDIQVKLLRVLQSQE 319 Query: 502 FERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPL 561 ER+G +K I+ + R+IAAT+R+L +MV++ FR DLYYR+NVFPI +PPLR R DIP Sbjct: 320 IERVGGSKSIKVNARIIAATHRNLARMVSEGAFREDLYYRINVFPIVVPPLRTRTNDIPA 379 Query: 562 LAKAFTFKIARRLGRNIDSIPAETLRT-----LSNMEWPGNVRELENVIERAVLLTRGNV 616 L F R+ R++ PA L L N WPGNVRELEN+IERA++L G Sbjct: 380 LTDHFI----RKKSRDLKIYPAPKLDNKAIYHLMNYHWPGNVRELENIIERALILWDGGA 435 Query: 617 LQLSLPDIVLPE-----------PETP-PAATVVALEGEDEYQLIVRVLKETNGVVAGPK 664 L +I E +TP P TVVA E+ VL T G + GP Sbjct: 436 LSFKNLNIAKTEGGAKFGAYKEKSKTPLPLETVVADHIEN-------VLALTKGRINGPN 488 Query: 665 GAAQRLGLKRTTLLSRMKRLGI 686 GAA+ L + +TL ++MK+LGI Sbjct: 489 GAAKILDVNPSTLRTKMKKLGI 510 >UniRef50_A0LFR7 Transcriptional regulator, NifA subfamily, Fis Family n=7 Tax=Deltaproteobacteria RepID=A0LFR7_SYNFM Length = 508 Score = 282 bits (721), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 162/330 (49%), Positives = 210/330 (63%), Gaps = 7/330 (2%) Query: 362 DENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARA 421 +EN L L IIGRS+ + VL+ ++ VA +++TVLI GETGTGKEL+ARA Sbjct: 172 EENSRLRRMLAEARRPTTNIIGRSKVIQEVLRAIDQVADTNTTVLISGETGTGKELVARA 231 Query: 422 IHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDE 481 IH+ S R +V++NCAAMP LLES+LFGHE+GAFTGA +R GRFE A ++FLDE Sbjct: 232 IHDNSRRAKGPLVQVNCAAMPDTLLESELFGHEKGAFTGAVTRRRGRFEEAQGGTIFLDE 291 Query: 482 VGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYR 541 VG++ Q KLLRVLQE+EF+ LGS++ ++ DVR+I A+N+DL+K VA FRSDLYYR Sbjct: 292 VGELSPIAQAKLLRVLQEREFQPLGSSRTVKVDVRVITASNKDLEKEVALGTFRSDLYYR 351 Query: 542 LNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVREL 601 LNVFPI LPPLRER DI LLA F K AR L +++ I + L WPGNVREL Sbjct: 352 LNVFPIFLPPLRERGPDILLLADYFVLKYARELDKDVKRITTSAIDMLMCYHWPGNVREL 411 Query: 602 ENVIERAVLLTRGNVL-QLSLPDIVLPEP---ETPPAATVVALEGEDEYQLIVRVLKETN 657 EN IERAVLL GN + LP + +P + + AL E LI LK+ Sbjct: 412 ENCIERAVLLAGGNAVDSWHLPPTLQMKPVGMQNVSRGKLEALVSAFERDLITDALKDVR 471 Query: 658 GVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 G AA+ LG + + ++++ GID Sbjct: 472 G---NQSQAARLLGTTKRIVQYKVEKYGID 498 >UniRef50_A3ESE7 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Leptospirillum sp. Group II RepID=A3ESE7_9BACT Length = 473 Score = 281 bits (720), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 155/329 (47%), Positives = 213/329 (64%), Gaps = 9/329 (2%) Query: 361 VDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIAR 420 + + +AL E+L S FG IIGRSE M + + ++AQS STVLI GE+GTGKEL+A Sbjct: 146 ISQIVALKEELKGRYS-FGRIIGRSEKMQELFDLLPVIAQSKSTVLIEGESGTGKELVAH 204 Query: 421 AIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLD 480 A+H S R VK+NCAA+ G+LES+LFGH +GAFTGA R GRFELA +LFLD Sbjct: 205 ALHENSPRREGPFVKLNCAALSEGVLESELFGHVKGAFTGAVQSRPGRFELASGGTLFLD 264 Query: 481 EVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYY 540 E+G++ +Q KLLRVLQE+EFER+G K ++ DVR+IAATNRDLK+ + + FR DLYY Sbjct: 265 EIGEISPSMQVKLLRVLQEEEFERVGGTKTVKVDVRVIAATNRDLKQAMEEGSFRKDLYY 324 Query: 541 RLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRE 600 RL V P+ LPPLRER D+PLL ++F + LG+NI + +E ++ L N +PGN+RE Sbjct: 325 RLRVIPVTLPPLRERQGDLPLLIQSFIERYNAELGKNIQGLTSEAMKVLLNYHYPGNIRE 384 Query: 601 LENVIERAVLLTRGNVLQL-SLPDIVLPEPETPPAATVVALEGED----EYQLIVRVLKE 655 L+N+IE A LL + + L LP +LP + +E E +LI + E Sbjct: 385 LQNIIEHAALLCNDSRIDLRHLPGDLLPAQSQSSFLELAMMEENPVRYVEKELIRLAMAE 444 Query: 656 TNGVVAGPKGAAQRLGLKRTTLLSRMKRL 684 + G V+ A++L + R+TL R+K + Sbjct: 445 SGGNVS---EVARKLSMGRSTLWRRLKEM 470 >UniRef50_Q893M0 Putative sigma-54 interacting protein n=1 Tax=Clostridium tetani RepID=Q893M0_CLOTE Length = 595 Score = 281 bits (718), Expect = 8e-74, Method: Compositional matrix adjust. Identities = 145/325 (44%), Positives = 209/325 (64%), Gaps = 11/325 (3%) Query: 370 QLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRN 429 +LNN F E+IG+S +M + + +E VA + +++ GE+GTGKEL+ RA+H R Sbjct: 273 KLNNDKIGFKEMIGQSNSMKELYELIEKVADKNVNIMVTGESGTGKELVVRALHYGGERR 332 Query: 430 NRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLEL 489 + VK+NCAAMP +LES+LFGHE+GAFTGA +R+GRFELA K +LFLDE+GDM L + Sbjct: 333 DNPFVKVNCAAMPKDILESELFGHEKGAFTGADKKRVGRFELAHKGTLFLDEIGDMDLSI 392 Query: 490 QPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHL 549 Q K LR++Q+QEFER+G NK I+ DVR+I ATN+DLKK V + FR DLYYRLN +++ Sbjct: 393 QAKFLRIIQQQEFERVGGNKTIKVDVRIICATNKDLKKEVKEGRFREDLYYRLNTITLYV 452 Query: 550 PPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAV 609 PPLRER EDIP L F + ++ + I E L +WPGNVRELEN +ERA+ Sbjct: 453 PPLRERKEDIPFLIHHFLKEKGKKFDKIAPKISPEVFDALMEYDWPGNVRELENAMERAI 512 Query: 610 LLTRGNVLQL-SLP-DIVLPEPETPPAATVVALEGED------EYQLIVRVLKETNGVVA 661 +L ++++L +LP IV E + V ++ ++ E ++I+ L++ + Sbjct: 513 ILCGKDLIRLNNLPISIVKNNKEFDESKHVTPIDIKEITIRNMEREIIIEALEKCD---W 569 Query: 662 GPKGAAQRLGLKRTTLLSRMKRLGI 686 ++ LG+ R TL ++MK I Sbjct: 570 NRTKTSKSLGISRRTLYNKMKEFNI 594 >UniRef50_Q027A1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q027A1_SOLUE Length = 450 Score = 280 bits (717), Expect = 9e-74, Method: Compositional matrix adjust. Identities = 164/351 (46%), Positives = 215/351 (61%), Gaps = 20/351 (5%) Query: 344 VDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDS 403 VD AL E+ L+E EN L L EF I+GRS AM + +E V S + Sbjct: 112 VDKAL---EVRALRE----ENRELKAALGR-RYEFDNIVGRSPAMQEIFAAIERVGPSRA 163 Query: 404 TVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASA 463 TVL+ GE+G GK+LIARAIH S R +R +VK+NC A+P L+ES+LFG+E+GAFTGA Sbjct: 164 TVLLTGESGVGKDLIARAIHFHSPRKDRPLVKINCTAIPENLMESELFGYEKGAFTGAQT 223 Query: 464 QRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNR 523 + G+FE AD ++FLDE+GD+P +Q KLLRVLQE+EFERLGSN DVRL+AATN+ Sbjct: 224 TKPGKFEQADTGTVFLDEIGDVPAAIQVKLLRVLQEREFERLGSNVTRHIDVRLVAATNQ 283 Query: 524 DLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPA 583 DL+ + FR DLYYRLNV P+++PPLRER DIP LA F K+A G ++SI Sbjct: 284 DLRAALEQGTFREDLYYRLNVVPLNIPPLRERKVDIPFLANHFVHKLAPDTGCQVESITD 343 Query: 584 ETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVL---PEPETPPAATVVAL 640 + L WPGNVRELENVIER++++ G QL DI L P P Sbjct: 344 AGMEKLMAYHWPGNVRELENVIERSLVMATGT--QLDADDIKLESAPRPRAQGNDNHFLP 401 Query: 641 EG----EDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 EG + E ++I L+ +G AA+ LGL R L R+ ++G++ Sbjct: 402 EGLSLDQYEQEIIREALRRADG---NKSQAARLLGLTRNALRYRLTQMGLE 449 >UniRef50_A9G6P0 Sigma-54 dependent DNA-binding response regulator n=2 Tax=Myxococcales RepID=A9G6P0_SORC5 Length = 481 Score = 280 bits (717), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 163/333 (48%), Positives = 209/333 (62%), Gaps = 28/333 (8%) Query: 378 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMN 437 FG IIG S + + +E VA + +TVLI GE+GTGKEL+ARA+H SGR +R +K+N Sbjct: 147 FG-IIGESPPIQELYAILERVADTPTTVLISGESGTGKELVARALHENSGRRDRPFIKVN 205 Query: 438 CAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVL 497 CAA+P L+ES+LFG+ERGAFTGA A + GRFELA +LFLDE+G++P E+Q KLLRVL Sbjct: 206 CAAIPKDLMESELFGYERGAFTGAVASKPGRFELASGGTLFLDEIGEIPNEMQVKLLRVL 265 Query: 498 QEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPE 557 QE EFER+G K I DVRL+AATNRDLK+ +A FR DL+YRLNV PI LP LR+R Sbjct: 266 QESEFERVGGIKTIHVDVRLVAATNRDLKREIAAGTFREDLFYRLNVVPIALPALRDRRS 325 Query: 558 DIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVL 617 DIP L F K RL ++I+SI E L L++ WPGN+RELENV+ERA+L G + Sbjct: 326 DIPHLCAHFVAKFNARLKKSIESIEPEALERLASHAWPGNIRELENVVERALLFADGARI 385 Query: 618 QL-SLPDIV---------------------LPEPETPPA--ATVVALEGEDEYQLIVRVL 653 +L LP+ + P TP V A + E LI R L Sbjct: 386 RLDDLPEEIRGGATSAPGAALPLAAAAADTSAAPSTPDGLKEQVKAAMSKLERDLIERAL 445 Query: 654 KETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 K+T+G V AA+ L + R L +MK L + Sbjct: 446 KQTHGNVT---HAARLLKISRKGLQLKMKELNL 475 >UniRef50_C0GUF2 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GUF2_9DELT Length = 554 Score = 278 bits (712), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 157/386 (40%), Positives = 239/386 (61%), Gaps = 14/386 (3%) Query: 312 LGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQL 371 +G+L L + +T + ++ + + ++A+ NAL Y+E +LK L D N L +L Sbjct: 170 MGLLLLVAEGKNRYTKEHARIMSSLNKPFSVALANALQYEEAIQLKNMLEDYNRDLRSEL 229 Query: 372 NNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNR 431 + + ++ I+G + V++ V VA +S VL+ GETGTGKE+ A A+H S R++ Sbjct: 230 SGLSAD-NRIVGAEFGLRQVMRMVRQVAPLESPVLLQGETGTGKEIFANALHAASLRSDG 288 Query: 432 RMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQP 491 +K+NC +P L++S+LFGHE+GAFTGA ++ GRFE ADK ++FLDE+G++PL +Q Sbjct: 289 PFIKVNCGGLPESLVDSELFGHEKGAFTGAISRNRGRFERADKGTIFLDEIGELPLNIQA 348 Query: 492 KLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPP 551 KLLRVLQ+ E ER+G ++ I DVR+I+AT+R+L++MV EFR DL++RLNVFPI +PP Sbjct: 349 KLLRVLQQNEIERVGGSRTIPVDVRIISATHRNLEQMVQRGEFREDLWFRLNVFPIMIPP 408 Query: 552 LRERPEDIPLLAKAFTFKIAR--RLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAV 609 LR+RP+D+P L + R ++ R I IP+ T+ L WPGNVREL+N++ER + Sbjct: 409 LRQRPQDLPALLDHLVSRKCREMKITREI-RIPSGTMDRLKKRAWPGNVRELQNLVERTL 467 Query: 610 LLTRGN-----VLQLSLP----DIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVV 660 + + VL L L + ET V+ E E + I + L+ G + Sbjct: 468 IQAHADNPDSAVLNLDLAVSGQKSIETNLETSGNTQVLTFE-EAAARHIKKALEVARGKI 526 Query: 661 AGPKGAAQRLGLKRTTLLSRMKRLGI 686 GP GAA+ LGL +TL +M++L I Sbjct: 527 TGPGGAAEILGLNPSTLRGKMRKLNI 552 >UniRef50_B8FCN8 Transcriptional regulator, NifA subfamily, Fis Family n=2 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FCN8_DESAA Length = 529 Score = 278 bits (712), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 164/399 (41%), Positives = 243/399 (60%), Gaps = 9/399 (2%) Query: 293 WGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQE 352 +G +Q+ +L L+ ++GVL L K +T + L R + E A+A+ N++ +E Sbjct: 109 FGGAVQSALILDLVIEGRLIGVLTLHGEVGKTYTARHEQLFRLLNEPFAVALSNSMRQRE 168 Query: 353 IHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETG 412 +++LKE L D+N E N E++G + V++ VA +S VL+LGETG Sbjct: 169 LNKLKELLTDDNPYFQE--NEEAFSENEVVGADYGLRGVMEMARQVAPLESPVLLLGETG 226 Query: 413 TGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELA 472 GKELIA A+H S R N ++K+NC A+P L++S+LFGHE+GAFTGAS+ + GRFE A Sbjct: 227 VGKELIASAVHRASPRRNGPLIKVNCGAIPDTLIDSELFGHEKGAFTGASSMKRGRFERA 286 Query: 473 DKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADR 532 D+ ++FLDEV ++ E Q +LLRVLQE+E ER+G+ + D+R+IAAT+R+L +V+ Sbjct: 287 DEGTIFLDEVAELSPEAQVRLLRVLQEKEIERVGAAETTHVDIRVIAATHRNLDGLVSMG 346 Query: 533 EFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFT--FKIARRLGRNIDSIPAETLRTLS 590 FR DL +RL VFPI +PPLR+R DIP L + F + +LG I + + L Sbjct: 347 RFRQDLLFRLKVFPIVIPPLRDRKGDIPSLVQHFVRIKSLDMKLG-TIPPLAPGAMDKLM 405 Query: 591 NMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVL-PEPETPPAATVVALEGEDEYQ-- 647 + WPGNVRELEN +ERA++L+ G D+ L P P+T + ++L D+ Sbjct: 406 DYSWPGNVRELENAVERALILSGGKKPVFQEFDLGLKPGPKTKNVES-LSLPTMDQAMAD 464 Query: 648 LIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 L+ + L G V G GAA+ LG+ TL +RMK+LG+ Sbjct: 465 LMRKALVLAKGRVEGKGGAAEILGMHPMTLRNRMKKLGV 503 >UniRef50_B3DZ60 DNA-binding response regulator, NtrC family (Contains REC, AAA-type ATPase, and DNA-binding Fis domains) n=4 Tax=Verrucomicrobia RepID=B3DZ60_METI4 Length = 464 Score = 278 bits (711), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 160/333 (48%), Positives = 222/333 (66%), Gaps = 18/333 (5%) Query: 363 ENLALTEQLNNVDSEFG--EIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIAR 420 ENL L QLN ++G +IIG S AM +V ++++ VA S +TVL+ GE+GTGKEL+A Sbjct: 130 ENLQLKRQLN---WKYGLEKIIGNSAAMKAVFEKIKQVASSKATVLLEGESGTGKELVAH 186 Query: 421 AIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLD 480 AIH LS R N V ++CAA+ LLES+LFGHE+GAFTGA +RIGRFE A + +LFLD Sbjct: 187 AIHQLSPRKNFPFVVVHCAALSPQLLESELFGHEKGAFTGAIERRIGRFEEAARGTLFLD 246 Query: 481 EVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYY 540 E+G++ L Q KLLR L E+ +R+GSNK++ DVR+IAATN++L+KMV + +FR DL++ Sbjct: 247 EIGEIDLPTQVKLLRALGEKTIQRVGSNKVVAVDVRVIAATNKNLEKMVEEGKFREDLFF 306 Query: 541 RLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRE 600 RLNV I +PPLRER EDIPLLA+AF + A G+ ID + E ++ L +WPGNVRE Sbjct: 307 RLNVVRIVMPPLRERKEDIPLLAQAFLAEFAAENGKKIDRLSPEAMKILLEYDWPGNVRE 366 Query: 601 LENVIERAVLLTRGNVLQ-LSLPD-IVLPEPETPPAATVVALE------GEDEYQLIVRV 652 L+ IE V+L +G ++ LP+ I +P P +V + E E E +LI+ Sbjct: 367 LKMAIEHGVVLCQGEEIRPRDLPERIRIPRPLLSAPISVESSEPDCFNLKEAEKRLILHA 426 Query: 653 LKETNGVVAGPK-GAAQRLGLKRTTLLSRMKRL 684 L+ V G K AA++LG+ R TL ++K+ Sbjct: 427 LR----VCQGKKTSAAKKLGISRKTLQRKIKQF 455 >UniRef50_D1RLY9 Transcriptional regulator FleQ n=1 Tax=Legionella longbeachae D-4968 RepID=D1RLY9_LEGLO Length = 468 Score = 278 bits (710), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 151/337 (44%), Positives = 217/337 (64%), Gaps = 30/337 (8%) Query: 378 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMN 437 F ++G S ++ +V + +E VA ++++VL+LGE+GTGKE++AR IH S R N+ + +N Sbjct: 134 FRSLVGNSTSIRTVRRLIEQVADTEASVLVLGESGTGKEVVARNIHAFSSRANKPFIPIN 193 Query: 438 CAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVL 497 C A+P LLES+LFGHE+GAFTGA R GRFELA+ +LFLDE+GDMPL +Q KLLRVL Sbjct: 194 CGAIPGELLESELFGHEKGAFTGAITTRQGRFELANSGTLFLDEIGDMPLPMQVKLLRVL 253 Query: 498 QEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPE 557 QE+ FER+GSNK I +VR+IAAT+R+L++ + + +FR DL+YRLNVFPI +PPLRER E Sbjct: 254 QERCFERVGSNKSIDVNVRIIAATHRNLEEAIKEGKFREDLFYRLNVFPIEMPPLRERAE 313 Query: 558 DIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIER-AVLLTRGNV 616 DIPL+ +I R I + + + LS WPGN+REL N++ER +L +G + Sbjct: 314 DIPLIFNELIARIESE-NRPIVHLMPDAMAALSEYSWPGNIRELANLVERLTILYPKGIL 372 Query: 617 LQLSLPDIVLPE------PETPPA-----------ATVVALEGED--------EYQLIVR 651 + LP + E +TP + TV + EG D E LI + Sbjct: 373 NKEDLPQKIRSEYKTYFDSDTPESEREALLRVISQGTVSSSEGIDLKEHLVKTELALISQ 432 Query: 652 VLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDK 688 L E++ VV+ AA L ++RTTL+ +M++ G+ + Sbjct: 433 ALNESDWVVS---HAANYLNMRRTTLVEKMRKYGLTR 466 >UniRef50_B8JEK1 Sensor protein n=14 Tax=cellular organisms RepID=B8JEK1_ANAD2 Length = 1079 Score = 278 bits (710), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 153/322 (47%), Positives = 201/322 (62%), Gaps = 14/322 (4%) Query: 378 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMN 437 F EI+G + AM V VE VA +D+TVL+ GETGTGKEL+ARAIH S R +R V +N Sbjct: 757 FEEIVGTAPAMREVFAMVEQVAPADATVLLRGETGTGKELVARAIHRRSPRRDRPFVAVN 816 Query: 438 CAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVL 497 C A+P L+ES+ FGHE+GAFTGA A+R+GRFE AD S+LFLDEVGD+ L +Q KLLRVL Sbjct: 817 CTAIPKDLMESEFFGHEKGAFTGAVARRVGRFEQADGSTLFLDEVGDLDLAIQAKLLRVL 876 Query: 498 QEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPE 557 QEQE R+G+ ++ DVR++AATNRDL+ +V + FR DL+YRLNV P+ LPPLRERP+ Sbjct: 877 QEQEITRVGARDPLKVDVRIVAATNRDLEALVHEGRFRDDLFYRLNVIPLRLPPLRERPQ 936 Query: 558 DIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVL 617 D+P L + F A+R GR P + L WPGNVREL N+ ERAVL+ V Sbjct: 937 DLPALLEHFLRSFAQRYGRTSPVPPPDLLAAARAYPWPGNVRELRNLCERAVLMGWAAVA 996 Query: 618 QL-SLPDIVLPEPET----PPAATVVALEGED------EYQLIVRVLKETNGVVAGPKGA 666 + V P P+ P ++ LE E + + R+LKE G + Sbjct: 997 PIFGAGAGVTPRPDAGAGVPVDTSLPLLEARQRLVERFEREYLTRLLKERRGRIG---EV 1053 Query: 667 AQRLGLKRTTLLSRMKRLGIDK 688 A+ G+ L +MK G+ + Sbjct: 1054 ARAAGIAERNLYEKMKAYGLSR 1075 >UniRef50_Q1PYM7 Similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYM7_9BACT Length = 469 Score = 278 bits (710), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 178/412 (43%), Positives = 251/412 (60%), Gaps = 47/412 (11%) Query: 301 CLLPLMSG----DTMLGVLKLAQCE--EKVFTTTNLNLLRQIAERVAIAVDNALAYQEIH 354 L+ +M+G D+ + V++L + EK F L+ LR + E+ A+ QE+ Sbjct: 77 ALMVVMTGYGSVDSAVEVMRLGAYDYLEKPF---KLDRLRSVVEK---ALRRQGLRQEVL 130 Query: 355 RLKERLVDENLALTEQLNNVDSEFGEIIGRSEAM---YSVLKQVEMVAQSDSTVLILGET 411 +KE+ Q + G IIG S M YS++KQV S +TVLI GE+ Sbjct: 131 EIKEK----------QWTFDEESDGIIIGNSPQMKEIYSLIKQV--AKSSSTTVLIQGES 178 Query: 412 GTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGA-SAQRIGRFE 470 GTGKEL+ARA+H LS R + R V +NCAA+ LLE++LFG+E+GAFTGA +A + G FE Sbjct: 179 GTGKELVARAVHRLSARKSGRFVDINCAALTESLLEAELFGYEKGAFTGAATAGKPGLFE 238 Query: 471 LADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVA 530 +ADK ++FLDE+G+M + LQ KLLR+LQE++F+R+G + I+ DVR+IA+TNR+L++ +A Sbjct: 239 IADKGTVFLDEIGEMGVLLQAKLLRILQERQFKRVGGIQDIKIDVRIIASTNRNLEEEIA 298 Query: 531 DREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLS 590 FR DLYYRL V PI++PPLRER EDI LL K F K G+NI IP +T R L Sbjct: 299 SGNFRKDLYYRLKVLPIYVPPLRERREDIMLLVKYFIHKYNNEFGKNICDIPPDTERILL 358 Query: 591 NMEWPGNVRELENVIERAVLLTRGNVLQLS-LPDIVLPEPETPPAATV--------VALE 641 WPGN+REL+NV+ER VL+ G+ L + +I + + E+ A + V+ + Sbjct: 359 EYGWPGNIRELKNVVERGVLIANGSALSPKYVANISVGKKESESLAGITVDGNTDCVSSD 418 Query: 642 GED-------EYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 G D E Q I VLKET+ AA+ LG+ RTTL +++K GI Sbjct: 419 GLDARSLAFMEKQHIENVLKETS---WRRTEAARVLGINRTTLYNKIKEYGI 467 >UniRef50_C0GRG2 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GRG2_9DELT Length = 464 Score = 278 bits (710), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 143/320 (44%), Positives = 207/320 (64%), Gaps = 12/320 (3%) Query: 375 DSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMV 434 +S F I+G S M ++ + VE AQSD V I GE+GTGKEL+A+AIHNLS R + + Sbjct: 143 ESSFQGIVGHSRQMKNLFELVEKAAQSDFPVFICGESGTGKELVAQAIHNLSPRAEQPYI 202 Query: 435 KMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLL 494 ++NCAA+ LLES+LFGH +GAFTGA R GRFE A K +FLDE+GD+P+ +Q KLL Sbjct: 203 QVNCAALNESLLESELFGHVKGAFTGALQHRKGRFEAAHKGDIFLDEIGDLPMAMQVKLL 262 Query: 495 RVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRE 554 RVL+ + FER+G N+ I D+R I ATN++L ++A FR DL+YR+NV PIHLPPLRE Sbjct: 263 RVLETKTFERVGDNRTISVDLRFITATNKNLPDLIARGGFREDLFYRINVIPIHLPPLRE 322 Query: 555 RPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRG 614 R ED+P L F +++R+ +NI + E +R WPGNVREL++ +E + +L G Sbjct: 323 RKEDVPHLVDFFIKRLSRKNKKNIQGLSPEAMRIFMQYSWPGNVRELKSALEYSYVLAEG 382 Query: 615 NVLQL-SLPDIV------LPEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAA 667 + ++ +LP+ + + PPA + + Q ++ LK+++G AA Sbjct: 383 DRIRSENLPEYLKDGGNDFQAVDLPPAPAENL--QQRQKQELIEALKQSSG---NKSQAA 437 Query: 668 QRLGLKRTTLLSRMKRLGID 687 + LG+ R T+L+RM++ GID Sbjct: 438 RLLGINRVTVLNRMRKYGID 457 >UniRef50_Q1PYI3 Strongly similar to sigma 54 response regulatory protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYI3_9BACT Length = 448 Score = 278 bits (710), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 163/384 (42%), Positives = 236/384 (61%), Gaps = 19/384 (4%) Query: 303 LPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALA----------YQE 352 LP M G ++L +K + T + ++ V D LA E Sbjct: 57 LPGMGGLSLLQEIKKKNSSIAIVVVTAYSSIKSAVNAVKHGADEYLAKPVDVEELELVLE 116 Query: 353 IHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETG 412 R K++LV +N L E+L + F E++G S M+ + K +E VA S ++VLI+GETG Sbjct: 117 KLREKQQLVIQNRLLKEELKD-KYTFSELVGGSPQMHRIFKMIEDVAPSTASVLIMGETG 175 Query: 413 TGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELA 472 TGKEL+A AIH S R + V ++CAA+ G+LES+LFGHE+GAFTGA R GRFELA Sbjct: 176 TGKELVAHAIHYRSERAGKPFVALHCAALSEGILESELFGHEKGAFTGAIQSRKGRFELA 235 Query: 473 DKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADR 532 D +LFLDE+ +M L++Q KLLRVL++ EFER+G K I+ DVR IAATNR+L++ V++ Sbjct: 236 DGGTLFLDELAEMSLKVQVKLLRVLEKGEFERVGGEKTIKVDVRCIAATNRNLEEEVSEG 295 Query: 533 EFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNM 592 FR DL+YRLNV I +PPLRER +DIP+L+ F K A++ + I E ++ L + Sbjct: 296 RFREDLFYRLNVINIQMPPLRERKDDIPILSNYFAVKYAKKYKKEIKGFDPEAIKALLSH 355 Query: 593 EWPGNVRELENVIERAVLLTRGNVLQLS-LPDIVLPEPETPPAATV---VALEGEDEYQL 648 W GN+REL+N IERA++L + + + + LP+ ++P+ E P + L+ E E ++ Sbjct: 356 HWQGNIRELQNTIERAIVLCKSDTISVDHLPESIMPDNEYIPVIKIPIGTTLK-EAEKEI 414 Query: 649 IVRVLKETNGVVAGPKGAAQRLGL 672 I R L+ TNG + AA+ LG+ Sbjct: 415 IQRTLQITNG---SKQSAAKILGI 435 >UniRef50_C3ICC4 Sigma54 specific transcriptional regulator, Fis n=4 Tax=Bacillus thuringiensis RepID=C3ICC4_BACTU Length = 693 Score = 277 bits (709), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 147/323 (45%), Positives = 208/323 (64%), Gaps = 14/323 (4%) Query: 374 VDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRM 433 ++ F EIIG S+ + L VA+SDSTVLI GE+GTGKELIA+ IH +S R ++ Sbjct: 366 LNDSFLEIIGCSDVLMETLFIANKVAKSDSTVLITGESGTGKELIAKGIHKVSLRKDKPF 425 Query: 434 VKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKL 493 +++NCAA+P L+ES+LFGHE+GAFTGA R G+FE A+ ++FLDE+GD+ L+LQ KL Sbjct: 426 IRVNCAAIPPNLIESELFGHEKGAFTGALHMRRGKFEQANNGTIFLDEIGDLKLDLQVKL 485 Query: 494 LRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLR 553 LRVLQE+E R+G +K I+ +VR++AATN +L+KMV DREFR DLYYRLNV PIH+PPLR Sbjct: 486 LRVLQEKEIVRVGGDKTIKLNVRVLAATNGNLQKMVHDREFREDLYYRLNVIPIHIPPLR 545 Query: 554 ERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTR 613 ER DI L + F L + I S + L L WPGN+REL+NVIERA+ L+ Sbjct: 546 ERKADIQSLIEYFRGHFNTSLNKEIHSYTDDFLHALMKYNWPGNIRELQNVIERAMNLSE 605 Query: 614 GNVLQLS-LPDIV--------LPEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPK 664 +VL++ LPD + + + TV+ + EY+ ++LK Sbjct: 606 NDVLEIGDLPDNINMNSQQNSIINNQIENTETVLTM---SEYE--KKILKHVIQFYPSFN 660 Query: 665 GAAQRLGLKRTTLLSRMKRLGID 687 A + LGL T+ +++++ ++ Sbjct: 661 AAGKALGLTHKTVAAKVRKYNLE 683 >UniRef50_B6WRE4 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WRE4_9DELT Length = 521 Score = 277 bits (709), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 180/413 (43%), Positives = 234/413 (56%), Gaps = 24/413 (5%) Query: 291 DTWGNQIQTLCLLPLMSGDTMLGVLKLAQC-EEKVFTTTNLNLLRQIAERVAIAVDNALA 349 D + I +C+ P+ D +LG L + + + V + +L IA +A A A A Sbjct: 110 DLQKDTIAFICV-PIKFEDEVLGALSVDRVFADAVTLEEDERILTIIASMIAHA---ARA 165 Query: 350 YQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILG 409 Q + + ++EN+ L L+ G +G S+AM V +Q+ VA S +TVL+ G Sbjct: 166 RQNVMDERVAAIEENMRLRNALSAPLRPHG-FVGNSDAMRLVYEQISQVAPSSTTVLLYG 224 Query: 410 ETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRF 469 E+GTGKEL A AIH+ R+ + +NCAA+P L+ES+LFGHE+GAFTGAS R GRF Sbjct: 225 ESGTGKELAAHAIHSAGKRSKGPFISLNCAALPENLIESELFGHEKGAFTGASGIRKGRF 284 Query: 470 ELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMV 529 ELAD +LFLDEVG++ L Q KLLRVLQE+ FERLG + + DVR+I ATNRDL +MV Sbjct: 285 ELADGGTLFLDEVGELSLLTQAKLLRVLQERCFERLGGTESLSVDVRIITATNRDLARMV 344 Query: 530 ADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTL 589 + FR DLYYRLNVFPIH+PPLRER DI LA F K A GR+ I + L Sbjct: 345 EEGTFRRDLYYRLNVFPIHMPPLRERQNDIQPLAAYFVDKYAAANGRSGIRISLAVMDML 404 Query: 590 SNMEWPGNVRELENVIERAVLLTR--GNVLQLSLP-----------DIVLPEPETPPAAT 636 WPGN+RELENV+ERAVLL G +L LP P P AA+ Sbjct: 405 QRYTWPGNIRELENVMERAVLLVGQDGLILPQHLPRELHSTHCPFGPAAHKGPVEPYAAS 464 Query: 637 VVALEGEDEYQ--LIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 + DE + I L G + AAQ LGL + RMK+ GI+ Sbjct: 465 GTLQDRLDELERACITDALARHKGHMG---HAAQALGLTERVMALRMKKHGIN 514 >UniRef50_A7HBA5 Two component, sigma54 specific, transcriptional regulator, Fis family n=6 Tax=Bacteria RepID=A7HBA5_ANADF Length = 466 Score = 277 bits (708), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 152/335 (45%), Positives = 224/335 (66%), Gaps = 11/335 (3%) Query: 357 KERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKE 416 ++ LV EN L + L + F +++ +S AM SV + A+S+ST+L+LGE+G+GKE Sbjct: 123 QQSLVRENAVLRQALKQ-EYRFRDLLSKSPAMQSVFELARTAARSNSTILVLGESGSGKE 181 Query: 417 LIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSS 476 ++ARA+H S R V ++CAA+ LLES+LFGHE+G+FTGA ++R G+FE A + Sbjct: 182 VLARAVHAESPRAGGPFVAVSCAALTESLLESELFGHEKGSFTGAISRRKGKFEAAHGGT 241 Query: 477 LFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRS 536 LFLDEVGD+ +LQ LLRVL+E+ F R+G N+ I+ DVR+IAATNRDL++ + +FR Sbjct: 242 LFLDEVGDIGPKLQLDLLRVLEERRFHRVGGNEPIEVDVRIIAATNRDLRRAAHEGKFRE 301 Query: 537 DLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPG 596 DL+YRLNV PI +PPLRER EDIPLL + F +++ + R I+ + + + L +WPG Sbjct: 302 DLFYRLNVIPILVPPLRERREDIPLLVENFVERLSVEMKRRIEGVSPDAMGALMAHDWPG 361 Query: 597 NVRELENVIERAVLLTRGNVLQLSLPDIVLP---EPETPPAATVVALEGEDEYQLIVRVL 653 NVREL NV+ER ++ G V+QLS D+ LP E + P T+ +LE E E + + VL Sbjct: 362 NVRELRNVLERGAVVATGTVIQLS--DLGLPTRLEAASKP-GTLASLE-EVEKRHVAAVL 417 Query: 654 KETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDK 688 NG V+ +A+ LG+ R TL ++M++ G+ + Sbjct: 418 AHANGNVS---QSARILGIDRVTLYNKMRKYGLRR 449 >UniRef50_A6DT60 Sigma-54 dependent transcriptional regulator/response regulator n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DT60_9BACT Length = 463 Score = 277 bits (708), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 151/314 (48%), Positives = 211/314 (67%), Gaps = 10/314 (3%) Query: 380 EIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCA 439 +II +S AM +VL+ V+ +A + S+VLI GETGTGKE+IA+AIH S R+ + + ++CA Sbjct: 152 QIIYQSVAMENVLRTVQQIAPARSSVLITGETGTGKEVIAKAIHAASTRSKKAFIAVHCA 211 Query: 440 AMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQE 499 A+ A L ES+LFGHE+G+FTGA+ +RIGRFE AD +LFLDE+G++ Q KLLR+L+ Sbjct: 212 ALNANLFESELFGHEKGSFTGANEKRIGRFEAADGGTLFLDEIGEIDAATQVKLLRILES 271 Query: 500 QEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDI 559 + FER+G N+ + +D RLIAATNRDL+KMV EFR DLYYRL+V + LPPLR+R EDI Sbjct: 272 RSFERVGGNETLYSDARLIAATNRDLRKMVQAGEFREDLYYRLDVINLELPPLRDRREDI 331 Query: 560 PLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQL 619 P L + + N+ A+ + L +WPGNVREL NV+ER +L++ L L Sbjct: 332 PALLQHWLISSVTENQLNVKGFTADAMARLCTYDWPGNVRELRNVVERMAVLSQQEYLDL 391 Query: 620 -SLPD-IVLPEPETPPAATV----VALE-GEDEYQLIVRVLKETNGVVAGPKGAAQRLGL 672 +LPD ++L E + A + AL+ E+E LI++ LKE+N AA+RLG+ Sbjct: 392 PNLPDHVLLGEQQLSETAKIEDKDKALDVAENEKVLILKALKESNN---NRTLAAERLGM 448 Query: 673 KRTTLLSRMKRLGI 686 R TL R+K+ GI Sbjct: 449 SRRTLHRRLKQFGI 462 >UniRef50_C0GSE0 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GSE0_9DELT Length = 730 Score = 277 bits (708), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 165/392 (42%), Positives = 238/392 (60%), Gaps = 24/392 (6%) Query: 302 LLPLMSGDTMLGVLKLAQCEEKVFTTTN-LNLLRQIAERVAIAVDNALAYQE-IHRLKER 359 ++PL D + G + LA C K ++ + L+ + + + A+ +QE I +LK+ Sbjct: 358 VVPLYYEDILCGAM-LASCSSKCKCDSDSMELISLVLSHASGTIRRAILHQEEIKKLKQG 416 Query: 360 LVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIA 419 + + + F +IGR M ++ + ++ VA +D TVLI GE+GTGKEL+A Sbjct: 417 VSE------------SAGFEGMIGRDYRMQTIYRLIQDVAPTDVTVLIQGESGTGKELVA 464 Query: 420 RAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFL 479 +AIH S R + V +NC+A PA LLES+LFGHE+GAFTGA QR GRFE A ++FL Sbjct: 465 KAIHARSSRRDNPFVVINCSAYPATLLESELFGHEKGAFTGAIRQRPGRFEQARGGTVFL 524 Query: 480 DEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLY 539 DE+ ++ L Q KLLRVLQ Q+FERLG K I+ DVR++AATN+DL + V FR DLY Sbjct: 525 DEIAEVDLSAQVKLLRVLQTQKFERLGGEKSIEVDVRILAATNKDLLEEVKAGRFREDLY 584 Query: 540 YRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVR 599 YRL+V PI+LPPLRER D LLA+ F + A + I+ I + +R L + WPGNVR Sbjct: 585 YRLDVVPINLPPLRERGNDTALLARHFLERFAAVQDKRINEISSSAMRALLDYSWPGNVR 644 Query: 600 ELENVIERAVLLTRGNVLQL-SLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNG 658 ELENV+E+AV+L +G + L LPD + + P + + E L++ L+ Sbjct: 645 ELENVMEQAVVLCKGETIALEDLPDKL--QGARPARRKTIE---DQEKNLLLETLEACGW 699 Query: 659 VVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSA 690 K AA+RLG+ R+TL +++K+ GI S+ Sbjct: 700 ---NKKMAAERLGIGRSTLYAKLKKHGIMDSS 728 >UniRef50_A9AYA4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AYA4_HERA2 Length = 457 Score = 277 bits (708), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 140/238 (58%), Positives = 173/238 (72%) Query: 380 EIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCA 439 ++IG S AM + KQ+ VA +D+TVLI GETGTGKE++A IH S R N MVK+NCA Sbjct: 146 KMIGNSPAMQEIYKQIGRVAHTDATVLITGETGTGKEVLANLIHVNSARRNGPMVKVNCA 205 Query: 440 AMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQE 499 A+P LLES+LFGHE+GAFTGA AQR GRFELA K S+FLDE+G+M L Q KLLR+LQE Sbjct: 206 ALPESLLESELFGHEKGAFTGAVAQRKGRFELAHKGSIFLDEIGEMTLATQKKLLRILQE 265 Query: 500 QEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDI 559 +EFER+G ++ DVR+IAATNRDL+ V FR DLYYRLNV +HLP LR+R DI Sbjct: 266 REFERVGGTTTVRVDVRVIAATNRDLEADVRAGTFREDLYYRLNVITLHLPALRQRIGDI 325 Query: 560 PLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVL 617 PLLA+ F K I E + L+N +WPGNVR+LE+ IERAV+L+RGNV+ Sbjct: 326 PLLAEFFLDKYRYAPSSPPARISEEAMERLNNYDWPGNVRQLEHEIERAVILSRGNVI 383 >UniRef50_C9RBQ4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Ammonifex degensii KC4 RepID=C9RBQ4_AMMDK Length = 470 Score = 277 bits (708), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 159/322 (49%), Positives = 201/322 (62%), Gaps = 20/322 (6%) Query: 379 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNC 438 G +IG S AM V K + +A SD TVLI GE+GTGKEL+A AIH S R + VK++C Sbjct: 137 GTLIGCSPAMQEVYKTIGRIADSDVTVLIQGESGTGKELVAEAIHYNSPRQGKPFVKIDC 196 Query: 439 AAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQ 498 A+P LLES+LFGHE+GAFTGA +++G+FELAD ++FLDE+GD+ LQ KLLR LQ Sbjct: 197 TAIPENLLESELFGHEKGAFTGAHTRKLGKFELADGGTVFLDEIGDISPALQAKLLRFLQ 256 Query: 499 EQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPED 558 E+ FER+G + + DVR+IAATN+DL++ V FR DLYYRLNV I LPPLRER ED Sbjct: 257 EKAFERVGGTETRRVDVRIIAATNKDLEERVKSGLFREDLYYRLNVVEIKLPPLRERKED 316 Query: 559 IPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQ 618 I LL F R+ G+ + + L WPGNVREL NV ERAVL+ RGNV+ Sbjct: 317 IMLLVDYFVSLSNRKFGKQVTGLTRSVADILLQYNWPGNVRELRNVCERAVLMARGNVIT 376 Query: 619 L-SLPDIVL------PEPETP-------PAATVVALEGEDEYQLIVRVLKETNGVVAGPK 664 SLP+ +L E P P +VA E E I+R L+E G Sbjct: 377 PESLPEYLLRAVRGRTEAWHPAEDRGVLPLKEMVA---EMERSAILRALEEYRG---NKT 430 Query: 665 GAAQRLGLKRTTLLSRMKRLGI 686 A+ LG+ RTTL ++MK LGI Sbjct: 431 AVARALGMSRTTLYAKMKELGI 452 >UniRef50_C9S238 PAS modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Geobacillus RepID=C9S238_GEOSY Length = 467 Score = 276 bits (707), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 153/340 (45%), Positives = 220/340 (64%), Gaps = 28/340 (8%) Query: 369 EQLNNVDSEFG--EIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS 426 EQ + + F ++IG S A+ ++ +QV +A+S+STVLI GE+GTGKE++A++IH LS Sbjct: 129 EQSSRYGTRFSLDDVIGSSPAITALKEQVMKIAKSESTVLIRGESGTGKEVLAQSIHRLS 188 Query: 427 GRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGAS-AQRIGRFELADKSSLFLDEVGDM 485 RN V +NCAA+P LLES+LFG+E GAFTGA + GRFELA +LFLDE+GDM Sbjct: 189 HRNKGPFVAINCAAIPEALLESELFGYEEGAFTGAKKGGKPGRFELARGGTLFLDEIGDM 248 Query: 486 PLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVF 545 PL LQ KLLRVLQE+ ER+G K I+ DVR+IAAT++DL+ M+A+ +FR DLY+RLNV Sbjct: 249 PLYLQAKLLRVLQERRIERVGGTKSIEVDVRIIAATHKDLESMIANNQFREDLYFRLNVI 308 Query: 546 PIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVI 605 P+++PPLRER ED+ L + + +K +RLG+ ++ L+ + + WPGN+RELEN++ Sbjct: 309 PLYVPPLRERKEDLYELIQYYMYKFCKRLGKEPKRFSSQALKKIFDYHWPGNIRELENMV 368 Query: 606 ERAVLLTRGNVLQLS-LPDIV--------------LPEPET----PPAATVVALEGEDEY 646 E V L G+++ +S LP + + EP+T P + + E E Sbjct: 369 EYIVNLEIGDLVTISSLPASIREMSKDQRHDMEEEMKEPQTVSHLPKSLYKI---NEVEE 425 Query: 647 QLIVRVLKETNGVVAGPKGAAQRLGLKRTTL---LSRMKR 683 QLI++ L+ G + AA+ LG+ TL L +MKR Sbjct: 426 QLIIQALQRFGTSTEGKRKAAEALGISLATLYRKLEKMKR 465 >UniRef50_Q1D6H5 Sigma-54 dependent DNA-binding response regulator n=7 Tax=Myxococcales RepID=Q1D6H5_MYXXD Length = 474 Score = 276 bits (707), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 153/327 (46%), Positives = 202/327 (61%), Gaps = 24/327 (7%) Query: 381 IIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAA 440 IIG S + V K ++ VA + STVLI GE+GTGKELIA A+H S R ++ +K+NCAA Sbjct: 137 IIGDSSTIQEVYKIIDKVADTPSTVLITGESGTGKELIATALHGASSRRDKPFIKINCAA 196 Query: 441 MPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQ 500 +P LLES+LFG+ERGAFTGA + GRFELAD+ +LFLDE+G++P+E+Q KLLR +QE Sbjct: 197 IPHTLLESELFGYERGAFTGAVTSKPGRFELADEGTLFLDEIGEIPVEMQVKLLRAIQEG 256 Query: 501 EFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIP 560 EFER+G K + DVRL+AATNRDL+ + FR DLYYRL V PI LP LRER D+P Sbjct: 257 EFERVGGIKTTRVDVRLVAATNRDLQAEIEAGRFRKDLYYRLAVVPISLPALRERRSDVP 316 Query: 561 LLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNV---- 616 +LA+ F K RRL + I+ I + + L WPGN+RELEN+IER +L G + Sbjct: 317 MLARHFVEKYNRRLNKKIEGIADDAMALLQGYAWPGNIRELENLIERVLLFADGPLITAR 376 Query: 617 -----------------LQLSLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGV 659 L ++ I +P E V E E LIV+ L+ET G Sbjct: 377 DLPEPVRQGTGVQAGANLASAVASIDVPTGEVGLKDIVRMKAAELERDLIVKKLEETGGN 436 Query: 660 VAGPKGAAQRLGLKRTTLLSRMKRLGI 686 V AA+ L + R +L ++MK G+ Sbjct: 437 VT---RAARLLQISRKSLQTKMKEFGL 460 >UniRef50_B3Q676 Transcriptional regulator, NifA subfamily, Fis Family n=9 Tax=Bacteria RepID=B3Q676_RHOPT Length = 561 Score = 276 bits (706), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 174/403 (43%), Positives = 230/403 (57%), Gaps = 26/403 (6%) Query: 295 NQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIH 354 +++ C+ P++ +LG + C E+V+ N LL Q AE +A+ E++ Sbjct: 160 DKLAFFCV-PIVLAQKVLGTI----CAERVYM--NQRLLNQDAELLAMVASLIAPAVELY 212 Query: 355 RL----KERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGE 410 + K RL EN L +L IIG S+ M V V VA + +TVL+LGE Sbjct: 213 LIENVDKVRLETENRRLKSELKQ-RFRPANIIGNSKPMQEVYAMVHKVASTKATVLLLGE 271 Query: 411 TGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFE 470 +G GKEL+A A+H S + +K NCAA+P L ES+LFGHERGAFT A A G FE Sbjct: 272 SGVGKELVASALHYNSPVADGPFIKANCAALPEALAESELFGHERGAFTSAIATHKGYFE 331 Query: 471 LADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVA 530 A ++FLDEVG++ L Q KLLRVLQE+ FER+G K ++ DVR+IAATNR+L +MVA Sbjct: 332 QASGGTIFLDEVGELSLPTQAKLLRVLQERTFERVGGAKPVKVDVRIIAATNRNLAEMVA 391 Query: 531 DREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLS 590 + FR DL+YRLNVFPI +PPLR+R D+ LA F + +G+ I I + L Sbjct: 392 EGTFREDLFYRLNVFPITIPPLRDRGSDVITLADHFVTTYSAEIGKPIKRISTPAINMLM 451 Query: 591 NMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEG--ED---- 644 + WPGNVRELENVIER+V+L V+ LP P T G ED Sbjct: 452 SYHWPGNVRELENVIERSVILAEEGVIH----GYDLPPSLQTPTETGTGFSGTLEDRVTA 507 Query: 645 -EYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 EY++IV LK +NG V AA LGL R L RM+R G+ Sbjct: 508 VEYEMIVEALKASNGNVG---QAATTLGLTRRMLGLRMERHGL 547 >UniRef50_Q1INE5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Acidobacteria RepID=Q1INE5_ACIBL Length = 459 Score = 276 bits (706), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 159/360 (44%), Positives = 226/360 (62%), Gaps = 25/360 (6%) Query: 338 ERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEM 397 E A V ALA++ R EN+ L EQ+ + +++ RS+AM + +E Sbjct: 111 EETAHLVSKALAHK-------RTEQENVRLKEQIE--EHAHVDLVWRSDAMKKINDAIET 161 Query: 398 VAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGA 457 VA +D+TVLI GE+GTGKE++ARAIH LS R MV ++C A+ LLES+LFGHE+GA Sbjct: 162 VAPTDATVLITGESGTGKEVVARAIHALSTRRFHPMVPVHCGALTETLLESELFGHEKGA 221 Query: 458 FTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRL 517 FTGA ++ G+FE+A+ ++FLDE+GD+ L+ Q LLRVLQE+E R+G N+ I+ D R+ Sbjct: 222 FTGAQYRKKGKFEVAEGGTVFLDEIGDISLKTQTDLLRVLQEREIVRVGGNQPIKVDFRI 281 Query: 518 IAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRN 577 +AATN+DL+K++ + FR DL+YRLNVF I LPPLR+R EDIPLL FT K A ++ + Sbjct: 282 VAATNKDLEKLIEEGHFRPDLFYRLNVFRIELPPLRDRREDIPLLVNHFTKKFAEQMNKR 341 Query: 578 IDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATV 637 + + + + L WPGNVRELEN +ERA+++ + +L D VL + AAT+ Sbjct: 342 VTRVASPAMNMLQQYPWPGNVRELENAVERAMVVAQEP--ELRETDFVL---KVKAAATM 396 Query: 638 VALEG-------ED-EYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKS 689 + G ED E + I+ VL ETN AA+ L + R TL ++KR G K+ Sbjct: 397 SSTNGTGTPKTLEDIEKEHILHVLDETNW---NQTRAAEMLDIDRVTLHHKIKRYGWQKT 453 >UniRef50_C1A631 Putative NtrC family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A631_GEMAT Length = 472 Score = 276 bits (706), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 154/333 (46%), Positives = 202/333 (60%), Gaps = 28/333 (8%) Query: 379 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNC 438 GE+IG S AM V + V +D+ VLI GE+GTGKEL A A+H S R +R V++NC Sbjct: 138 GEMIGDSPAMRDVRALLARVGPTDARVLITGESGTGKELAAAALHVSSARRDRPFVRVNC 197 Query: 439 AAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQ 498 AA+P L+ES++FGHERGAFTGA+ +RIGRFELA +LFLDEVGD+ E Q KLLR ++ Sbjct: 198 AAIPRDLVESEMFGHERGAFTGATERRIGRFELAHTGTLFLDEVGDLGAEAQAKLLRAIE 257 Query: 499 EQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPED 558 +E ER+G K I+ DVR++AATN+DL + VAD FR DL++RLNV PIHLPPLR+RP D Sbjct: 258 AREIERVGGGKPIKVDVRILAATNKDLTRAVADGSFREDLFFRLNVIPIHLPPLRDRPGD 317 Query: 559 IPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQ 618 +P L + F+ + R GR + L LS WPGN+REL NV+ER +L G+ + Sbjct: 318 LPALVRHFSARHRTRTGRPLVQWHESALGALSAYRWPGNIRELANVVERLAILHAGSEVT 377 Query: 619 LSLPDIVLPEPETPPAATVVALEGED-------------------------EYQLIVRVL 653 + VLPE P AT G + E +LI L Sbjct: 378 RTEVRQVLPETAALPGATSAVPSGTEAGTEVDTPDPASAAHMPLSDALDAYERRLISAAL 437 Query: 654 KETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 +++G VA AA+RL R L RM+RLG+ Sbjct: 438 AQSDGNVA---EAARRLQTDRPNLYRRMRRLGL 467 >UniRef50_Q2LRW3 Response regulator containing sigma 54 interaction domain n=3 Tax=Bacteria RepID=Q2LRW3_SYNAS Length = 457 Score = 276 bits (705), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 149/339 (43%), Positives = 228/339 (67%), Gaps = 17/339 (5%) Query: 359 RLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELI 418 RL +EN+ L +++N ++ E+ G+S + +++ + +VA +++ +LI+GE GTGKEL+ Sbjct: 122 RLEEENVLLKQKINR---DY-ELTGKSPPIIELMEMISIVAPTNAWILIMGENGTGKELV 177 Query: 419 ARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLF 478 ARAIH S R ++ MV++NCAA+P L+ES+LFGHE+GAFTGA+ ++ G+F++A + ++F Sbjct: 178 ARAIHRQSKRADKPMVEVNCAAIPEELIESELFGHEKGAFTGATEKKRGKFDIAHEGTIF 237 Query: 479 LDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDL 538 LDEV DM L+ Q K+LR+LQE++FER+G NK+IQ DVR++AATN+DL+K + + FR DL Sbjct: 238 LDEVADMSLKAQAKILRILQEKKFERVGGNKVIQLDVRVLAATNKDLEKEMEEGRFRQDL 297 Query: 539 YYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNV 598 +YRLNV P+ +PPLR R EDIPLLA+ F A + G +I + L L WPGNV Sbjct: 298 FYRLNVIPLKVPPLRSRKEDIPLLAERFLSDFALKEGEPGKTIQDDALALLMEHSWPGNV 357 Query: 599 RELENVIERAVLLTRGNVLQL----SLP-DIVLPEPETPPAATVVA-----LEGEDEYQL 648 REL+N IER ++T NV+ + LP D EP P ++A + + E Q Sbjct: 358 RELKNFIERLAIMTTSNVITVHDIPPLPRDGHKVEPFREPGFELLAGSFREAKMDFEKQY 417 Query: 649 IVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 I R L+E +G ++ A+ +GL+R+ L ++K G++ Sbjct: 418 ISRKLREFDGNIS---KTAESIGLERSNLHKKIKAYGLE 453 >UniRef50_A4J443 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Peptococcaceae RepID=A4J443_DESRM Length = 455 Score = 276 bits (705), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 142/317 (44%), Positives = 209/317 (65%), Gaps = 10/317 (3%) Query: 381 IIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAA 440 IIG S +M +V K + VA S++TVLI GE+GTGKEL+ARAIH S R N +K+NCA Sbjct: 142 IIGNSPSMRNVYKDIGRVADSNATVLIQGESGTGKELVARAIHYNSSRRNNPFIKVNCAN 201 Query: 441 MPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQ 500 +P LLES+LFG+E+GAFTGAS+ ++GRFELA + ++F DE+G++ L Q KLLR +QE+ Sbjct: 202 LPDSLLESELFGYEKGAFTGASSLKVGRFELAHEGTIFFDEIGEISLATQAKLLRAIQEK 261 Query: 501 EFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIP 560 EF+R+G K I+ +VR++AATNR LK+ V + EFR DL++RLNV I +PPLR+R EDIP Sbjct: 262 EFDRVGGTKTIKVNVRILAATNRKLKQSVREGEFREDLFFRLNVVNIEIPPLRDRKEDIP 321 Query: 561 LLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVL--- 617 LL F K + + I E ++ L +WPGNVRELENV+ER++++ RG ++ Sbjct: 322 LLIAHFLAKYNKEFNKEIKGFSKEAIKLLIGYDWPGNVRELENVVERSIIMARGAIIVPE 381 Query: 618 QLSLPDIVLPEPET----PPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLK 673 + L V +P ++ + + E ++I++ L+E N A+ L + Sbjct: 382 DIQLGATVSQQPTELEILDENLSLKQIISDVERKVILKALEENNWCRT---TVAKVLKIN 438 Query: 674 RTTLLSRMKRLGIDKSA 690 R +L ++MK LGI+++ Sbjct: 439 RRSLYAKMKELGIEENG 455 >UniRef50_B5ER80 Transcriptional regulator, NifA, Fis Family n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5ER80_ACIF5 Length = 545 Score = 276 bits (705), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 153/330 (46%), Positives = 213/330 (64%), Gaps = 8/330 (2%) Query: 296 QIQTLCLLPLMSGDTMLGVLKLAQCE--EKVFTTTNLNLLRQIAERVAIAVDNALAYQEI 353 ++ +P+ G +GVL + + E + V +++ LL+ IA V V+ +Q I Sbjct: 118 RLHAFVGVPIKVGYECIGVLAIYRSERHKGVSFRSDVRLLQMIANLVGQTVN---LHQGI 174 Query: 354 HRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGT 413 + RL+ E L ++L S +IG S AM +V V A +TVL+ GE+GT Sbjct: 175 SAERNRLLQEKHRLQKELQKRYS-IKNVIGNSRAMQAVFADVHQAAPGKATVLLRGESGT 233 Query: 414 GKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELAD 473 GKE+IARAIH LS R ++ V +NCAA+P +LES+LFGHERGAFTGA+ +R GRFELAD Sbjct: 234 GKEVIARAIHYLSPRRDKAFVSLNCAALPESILESELFGHERGAFTGATQERKGRFELAD 293 Query: 474 KSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADRE 533 +LFLDE+GD+ Q KLLRVLQE+EFER+G + + +VR+IAATNR+L++ V+ E Sbjct: 294 GGTLFLDEIGDISPAFQAKLLRVLQEREFERVGGTQTRRVNVRIIAATNRNLEEAVSKGE 353 Query: 534 FRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNME 593 FR+DLYYR+NV I LPPLRER EDIP L + F + R + P E L+T+ + Sbjct: 354 FRADLYYRINVVSIFLPPLRERREDIPALIEHFLARYNAENQRKLTLTP-EALQTMVSCY 412 Query: 594 WPGNVRELENVIERAVLLTRGNVLQ-LSLP 622 WPGNVRELEN +ER + RG++++ L +P Sbjct: 413 WPGNVRELENCVERTATMMRGDIIRNLDVP 442 >UniRef50_P30667 Nif-specific regulatory protein n=6 Tax=Bacteria RepID=NIFA_AZOBR Length = 625 Score = 276 bits (705), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 169/434 (38%), Positives = 246/434 (56%), Gaps = 20/434 (4%) Query: 193 ITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQHPAHEQ 252 ++ + S LD+ + + EV + + Y + + L N L + + + L + A Q Sbjct: 20 VSKILGSSLDLQQTLREVLRALAYQLQMHRGRVYLVGE-DNVLRLVAANGLSNE--AAAQ 76 Query: 253 SEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGN-----QIQTLCLLPLMS 307 E + +T R+ K+ ++ +LA L T G Q+ +L +P+ + Sbjct: 77 IEFRDGEGITGRILKTGMPAVV-----PNLAEEPLFLNRTGGREDLDEQVASLVGVPIKA 131 Query: 308 GDTMLGVLKLAQCEE---KVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDEN 364 ++GVL + + + + +++ L +A + V E R R E Sbjct: 132 AGVVVGVLTIDRISDEGPQGHFGSDVRFLTMVANLIGQTVRLHRTVAEERRFMMR---ET 188 Query: 365 LALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHN 424 + ++L V + +++ S M V+ QV VA STVLI GE+GTGKELIARAIHN Sbjct: 189 FRMQKELRPVAAPINDVVCTSPNMLEVMAQVHRVAPFKSTVLIRGESGTGKELIARAIHN 248 Query: 425 LSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGD 484 +S R + +++NCAA+P LLES+LFGHE+GAFTGA GRFELA +LFLDE+GD Sbjct: 249 MSPRKDAPFIRVNCAALPESLLESELFGHEKGAFTGAQKDHKGRFELASGGTLFLDEIGD 308 Query: 485 MPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNV 544 + Q KLLRVLQEQEFER+G +K I+TDVRLI ATN +L++ V +FR+DLY+R+NV Sbjct: 309 ISPNFQAKLLRVLQEQEFERVGGSKTIKTDVRLICATNLNLEEAVGHGKFRADLYFRINV 368 Query: 545 FPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENV 604 IHLPPLRER +DI LA+ F K A+ G + + E L L+ WPGNVRELEN Sbjct: 369 VTIHLPPLRERRQDIGPLARHFVAKFAKDNGMAL-VMEDEALEVLNRCTWPGNVRELENC 427 Query: 605 IERAVLLTRGNVLQ 618 IERA +R +++ Sbjct: 428 IERAATQSRDGIIR 441 >UniRef50_B8FEY3 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Deltaproteobacteria RepID=B8FEY3_DESAA Length = 460 Score = 275 bits (704), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 159/343 (46%), Positives = 216/343 (62%), Gaps = 22/343 (6%) Query: 359 RLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELI 418 R+V EN L +L + S FG IIG+S AM ++ + VA +++TVLI GE+GTGKE++ Sbjct: 121 RVVQENRLLKNELGDRYS-FGNIIGKSPAMVNIFDTIVKVAPTNATVLIQGESGTGKEMV 179 Query: 419 ARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLF 478 A++IH S R + V +NCAA+ +LES+LFGHE+GAFTGA+A + GRFELAD +LF Sbjct: 180 AKSIHFNSHRKDAPWVAVNCAALAESILESELFGHEKGAFTGAAAMKKGRFELADGGTLF 239 Query: 479 LDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDL 538 LDE+G++ LQ KLLRVLQE+ FER+G K I+ D+RLIAATNRDLKK V + FR DL Sbjct: 240 LDEIGEISSSLQVKLLRVLQEKTFERVGGVKPIEVDIRLIAATNRDLKKEVENSAFREDL 299 Query: 539 YYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLG--RNIDSIPAETLRTLSNMEWPG 596 +YRLNV PI LPPLRER +DIPLL F K A + + + R WPG Sbjct: 300 FYRLNVLPIQLPPLRERQKDIPLLVDHFLQKYASGPSGESRVRKVHPDVHRLFQEYAWPG 359 Query: 597 NVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGED------------ 644 NVRELENVIERA++L + +S+ D LP T + + +EG Sbjct: 360 NVRELENVIERAIILCNSDA--ISVND--LPRELTRSVSNTLHMEGIPVDATLYETLSMV 415 Query: 645 EYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 E +I R + ++ V + AAQ LG+ ++ L ++K+ G+D Sbjct: 416 EQAMIKRAMLMSDNVQS---HAAQILGIGKSGLNQKIKKFGLD 455 >UniRef50_B4UM36 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Anaeromyxobacter sp. K RepID=B4UM36_ANASK Length = 465 Score = 275 bits (704), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 153/314 (48%), Positives = 198/314 (63%), Gaps = 11/314 (3%) Query: 377 EFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKM 436 E G ++G S M V +++ A SD VL+ GETGTGK+L AR IH S R R V + Sbjct: 134 EAGGVLGDSAPMRRVRDRLDAAAASDVPVLVTGETGTGKDLCARTIHERSHRAGRPFVVV 193 Query: 437 NCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRV 496 NCAA+P L ES+LFGHE+GAFTGA +RIGRFE AD +LFLDEVG++ Q KLLR Sbjct: 194 NCAAIPEALFESELFGHEKGAFTGADRKRIGRFEAADGGTLFLDEVGELAASSQAKLLRA 253 Query: 497 LQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERP 556 L+ FE +GSN+ ++ DVR+IAATNRDL +A FR DLYYRLNV +H PPLRER Sbjct: 254 LESSTFEPVGSNRSVRVDVRVIAATNRDLASAIARGAFRKDLYYRLNVIDLHAPPLRERR 313 Query: 557 EDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNV 616 D+P+L AF +IA RLGR + + + L+ ++PGNVREL++ +ERAV L RG Sbjct: 314 GDVPVLTAAFLARIAGRLGRPVPQLEPAVVAALAAHDYPGNVRELQHALERAVALARGGP 373 Query: 617 LQLS--LPDIVLPEP--ETPPAATVVALEGED----EYQLIVRVLKETNGVVAGPKGAAQ 668 ++L PD+ P P E PA +A GE E Q I R L++T G A AA Sbjct: 374 IRLEHLPPDLAGPLPAGEAAPAGEGLARLGEAVEQFEQQYIRRALEKTGGHRA---RAAA 430 Query: 669 RLGLKRTTLLSRMK 682 LG+ R +L R++ Sbjct: 431 LLGISRKSLWERLR 444 >UniRef50_B5YI42 AdnA n=3 Tax=Bacteria RepID=B5YI42_THEYD Length = 324 Score = 275 bits (703), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 145/320 (45%), Positives = 210/320 (65%), Gaps = 18/320 (5%) Query: 381 IIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAA 440 IIG+S + +L ++ ++++D+T LI+GE+GTGKEL+A+ IH S R + + +NCAA Sbjct: 2 IIGQSIQIQRILTFIDKLSKTDTTALIMGESGTGKELVAKMIHQKSSRAEKPFIPVNCAA 61 Query: 441 MPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQ 500 +P+ LLES+LFGHE+GAFTGA R GRFELA++ ++FLDE+GDMPL LQ K+LRV+QE+ Sbjct: 62 IPSELLESELFGHEKGAFTGAQNCRYGRFELANEGTIFLDEIGDMPLHLQVKILRVIQEK 121 Query: 501 EFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIP 560 FER+G + IQ +VR+IAATN+DL+ V + FR DL++RLNV P+ +PPLRER EDIP Sbjct: 122 TFERIGGTRPIQVNVRIIAATNKDLENEVKEGRFREDLFWRLNVVPVVIPPLRERKEDIP 181 Query: 561 LLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQL- 619 LL + F K + + G ++ I E ++ N WPGNVRELEN+IER +L G + + Sbjct: 182 LLCEYFINKFSHKFGYSL-QIKPEVMQIFLNYTWPGNVRELENLIERLYVLNEGGNINIK 240 Query: 620 -----------SLPDIVLPEPETPPAATVVALEGEDEYQ--LIVRVLKETNGVVAGPKGA 666 S ++P+ P ++ + E EY+ LI+ L + + A Sbjct: 241 DIPERIRFGENSFQKELIPDDLNPFSSGIDLNEVLKEYEKKLILHALNLHGWIKS---RA 297 Query: 667 AQRLGLKRTTLLSRMKRLGI 686 A+ L + RTTL+ +MKRL I Sbjct: 298 AKYLNINRTTLIEKMKRLNI 317 >UniRef50_A5G703 Two component, sigma-54 specific, transcriptional regulator, Fis family n=7 Tax=Geobacter RepID=A5G703_GEOUR Length = 453 Score = 275 bits (702), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 150/308 (48%), Positives = 202/308 (65%), Gaps = 7/308 (2%) Query: 380 EIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCA 439 E+I AM +V K + VA S +TVLI GE+GTGKEL+AR IH LS R + +NCA Sbjct: 143 ELIFSGSAMDAVRKMIYDVAPSTATVLIHGESGTGKELVARMIHLLSKRKGAAFIPLNCA 202 Query: 440 AMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQE 499 A+P LLES+LFGHE+GAFTGA R G+FELA+ ++FLDE+G+MP LQ KLLRVLQE Sbjct: 203 AIPENLLESELFGHEKGAFTGAMQARRGKFELAEGGTIFLDEIGEMPALLQAKLLRVLQE 262 Query: 500 QEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDI 559 + FER+G + I+T+VR+IAATNRDL + VA++ FR DL+YRLNVFPI +PPLR R + + Sbjct: 263 RVFERVGGSMQIRTNVRVIAATNRDLNREVAEKRFRDDLFYRLNVFPITVPPLRARLDAL 322 Query: 560 PLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQL 619 LA+ F + A + G+ + I E LR + WPGN+REL+NVIER V+L R + Sbjct: 323 AGLARYFCARFAVKTGKKLKGINPEALRLMKAYHWPGNIRELQNVIERGVILAREELTAP 382 Query: 620 SLPDIVL-PEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLL 678 LP ++ E E P ++ + E I+ LK G + AA+ LG+ + TL Sbjct: 383 ELPAMIAGKETEGGPKVGILK---DIERNCILEALKNNRG---NRRMAAETLGISKRTLQ 436 Query: 679 SRMKRLGI 686 R+K LG+ Sbjct: 437 YRLKELGL 444 >UniRef50_C8WZC4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8WZC4_DESRD Length = 448 Score = 275 bits (702), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 151/330 (45%), Positives = 208/330 (63%), Gaps = 4/330 (1%) Query: 357 KERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKE 416 + +L++EN + QL + S G ++G+S+AM + +E VAQ ++ VL+ GETGTGKE Sbjct: 122 RSQLLEENQTMRRQLRDRYS-LGNMVGKSKAMQELFNLIEKVAQYEANVLVTGETGTGKE 180 Query: 417 LIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSS 476 L+AR IH N V ++CAA+P LLES+LFGH RGAFTGA+ Q+ G+ ELA + Sbjct: 181 LVARGIHYAGQEENLPFVPIDCAAVPETLLESELFGHSRGAFTGAAEQKKGQIELAHGGT 240 Query: 477 LFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRS 536 LFLDE+G++PL LQ K LR LQE+E RLG + + DVR+IAATNRDL+ +A ++R Sbjct: 241 LFLDEIGELPLALQKKFLRFLQEKEIVRLGETRRRKVDVRIIAATNRDLEAEIAAGQWRE 300 Query: 537 DLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPG 596 DL+YRLNV I +PPLRER +DIP L F K + G+ I + E + +WPG Sbjct: 301 DLFYRLNVISIEIPPLRERRDDIPPLVNHFLAKYNAQNGKAIQGMTGEVMEVFMAYDWPG 360 Query: 597 NVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKET 656 NVRELENVIERAV+L G+ + +S L E P +T E E +LIV+ L++T Sbjct: 361 NVRELENVIERAVVLCMGDSIAMSCLPPKLQERSAPAPSTDGVNLMEMEKRLIVQTLEKT 420 Query: 657 NGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 AA+ LG+ R L ++MK G+ Sbjct: 421 E---QNQSAAARELGISRKQLRTKMKHHGL 447 >UniRef50_Q1Q6P9 Similar to Sigma-54 dependent transcriptional regulator n=2 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q6P9_9BACT Length = 512 Score = 275 bits (702), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 149/327 (45%), Positives = 208/327 (63%), Gaps = 20/327 (6%) Query: 378 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMN 437 F +IG+S M ++ +E V+Q+DSTVLI GETGTGKEL+ARAIH S R + +V +N Sbjct: 188 FHSLIGKSYLMQNIYDLIEKVSQTDSTVLITGETGTGKELVARAIHYNSHRKDYNLVAVN 247 Query: 438 CAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVL 497 CAA+P LLES+LFGH +G+FTGA + G+FELADK ++FLDE+G++ + Q KLLRVL Sbjct: 248 CAALPETLLESELFGHVKGSFTGAIRDKKGKFELADKGTIFLDEIGELSIPTQVKLLRVL 307 Query: 498 QEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPE 557 QE+ ER+G K I+ D+R+IAATN+D+ +++ FR DL+YRLN+ I LP L+ER + Sbjct: 308 QERYIERVGDEKTIKVDIRIIAATNQDILELIEKGTFRKDLFYRLNIISIRLPSLKERTD 367 Query: 558 DIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVL 617 DIPLL F K R +NI+ I LR L WPGN+RELE VIE+AVLL + Sbjct: 368 DIPLLVNHFIEKFNIRFKKNINGISPNALRKLLAYSWPGNIRELEGVIEKAVLLEESETI 427 Query: 618 Q-LSLP-------DIVLPEP--ETPPAATVVALEG-----EDEYQLIVRVLKETNGVVAG 662 + + LP ++ LP+P P ++ L+ E EY V V ++ +G + Sbjct: 428 ENIELPTDHSATTNLCLPKPLNAGPDISSYEDLQKRLDMLEREY--FVSVFQKHHGRIG- 484 Query: 663 PKGAAQRLGLKRTTLLSRMKRLGIDKS 689 A GL R T+L++MK+ + KS Sbjct: 485 --SIAACTGLNRRTILNKMKKFSLKKS 509 >UniRef50_Q1PZ68 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZ68_9BACT Length = 470 Score = 275 bits (702), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 145/341 (42%), Positives = 218/341 (63%), Gaps = 16/341 (4%) Query: 360 LVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIA 419 L +EN L ++ ++ +GE++G+S+ M V ++E V +D TVL+ GE+G+GKEL A Sbjct: 130 LQEENTRLRMEIGMLEG-YGELLGQSKIMQEVFDRIEKVVTADVTVLLQGESGSGKELAA 188 Query: 420 RAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFL 479 IH S R N + MNCAA+P L+ES+LFGHERG+FTGA+ +R+G+FE+A+ ++ L Sbjct: 189 HEIHRRSKRKNGPFIVMNCAAVPETLIESELFGHERGSFTGATERRMGKFEMANNGTILL 248 Query: 480 DEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLY 539 DE+GDM L Q KLLRVLQEQ+FERLG + + DVR+I+AT+RDL++ + + FR DLY Sbjct: 249 DEIGDMSLSTQSKLLRVLQEQKFERLGGTETLAVDVRIISATHRDLEEEIEEGRFREDLY 308 Query: 540 YRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVR 599 YR+NV I +PPLR+R EDIPLL F +++ +N+ SI + ++ LS WPGN+R Sbjct: 309 YRINVVNIKIPPLRKRKEDIPLLVNRFIQHFSKKHYKNVVSISNDAMKKLSAYNWPGNIR 368 Query: 600 ELENVIERAVLLTRGNVLQLS-LPDIVLPEPETPPAATVV-----------ALEGEDEYQ 647 +L+N IE A++LT +VL +S L + ++ E +TP + V L E Sbjct: 369 QLKNTIESAIVLTNNDVLDISDLSEDIIREEKTPDSTKNVHYHLSFREAKKILIENFEKD 428 Query: 648 LIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDK 688 I + L+E G ++ A+ L + R L ++K L ++K Sbjct: 429 FISKKLEECGGNIS---HTAEALDMHRQNLQQKIKDLQLNK 466 >UniRef50_D0MEW0 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MEW0_RHOM4 Length = 495 Score = 275 bits (702), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 165/392 (42%), Positives = 232/392 (59%), Gaps = 20/392 (5%) Query: 295 NQIQTLCLLPLMSGDTMLGVLKLAQCEEK-VFTTTNLNLLRQIAERVAIAVDNALAYQEI 353 +IQ++ +PL + ++G + L ++ FT NL L A + AIA++NA YQ Sbjct: 113 QRIQSIACVPLRIKERLIGAIYLDSLSQRGRFTRDNLPFLEAFAHQAAIAIENAQLYQA- 171 Query: 354 HRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGT 413 L +EN L ++ + F EI+G+S AM V + V +D+TVLI GE+GT Sbjct: 172 ------LREENRRLRSEIQRLHG-FDEIVGQSPAMREVFDTMARVLDTDATVLIEGESGT 224 Query: 414 GKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELAD 473 GKELIARAIH S R ++ V + C ++P LLES+LFG+++GAFTGA + + G FE+AD Sbjct: 225 GKELIARAIHYNSERKDKPFVVVFCGSLPDELLESELFGYKKGAFTGALSDKKGLFEVAD 284 Query: 474 KSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADRE 533 ++FLDEVGD+ +Q LLRVLQE E R+G ++ + DVR+I+ATN+ L+++V + Sbjct: 285 GGTVFLDEVGDLSPRMQTALLRVLQEGEIRRVGDTQVRKVDVRVISATNKPLRELVQQGK 344 Query: 534 FRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNME 593 FR DLYYRLN I +PPLR R DIPLLA F K A + +I E L L Sbjct: 345 FREDLYYRLNTIQITVPPLRHRRGDIPLLAHHFLDKYAVKKRAHIKGFTPEALELLERYH 404 Query: 594 WPGNVRELENVIERAVLLTRGNVL---QLSLPDIVLPEPETPPAATVVALEGEDEYQLIV 650 WPGNVRELEN IERAV+L RG ++ L LPD +P P E E ++++ Sbjct: 405 WPGNVRELENTIERAVVLARGELITPEDLRLPDTDGADPFEPDLPL-----KEVERRVVL 459 Query: 651 RVLKETNGVVAGPKGAAQRLGLKRTTLLSRMK 682 R LK G ++ A+ LG+ R L ++K Sbjct: 460 RTLKRHGGNIS---ETARVLGVSRRWLHYKLK 488 >UniRef50_C7PDE5 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PDE5_CHIPD Length = 651 Score = 275 bits (702), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 167/434 (38%), Positives = 252/434 (58%), Gaps = 34/434 (7%) Query: 276 LHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQ 335 ++E+ ++ ++ L DT+ IQ+ + P++ + ++ ++T +++LL Sbjct: 234 VNEKPNVPSLQKTLIDTFN--IQSYLVFPVVLSNGQSFHYFFYSRQKNIYTNIHISLLDN 291 Query: 336 IAERVAIAVDNALAYQEIHRLKERLV-DENLALTE----------QLNNVD-SEFGEIIG 383 + R +A L E+++ ENLA+++ Q N ++ EF IIG Sbjct: 292 L--RTGLAT-----------LAEKMIYGENLAISKNTPVHYERKLQGNTLNYPEFRSIIG 338 Query: 384 RSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPA 443 + L VA +++VLILGE+GTGKE +A+AIH LS R N + +NCAA+P Sbjct: 339 NHHLLLGALDLAAQVAFYNTSVLILGESGTGKEKLAQAIHLLSPRKNAPFITVNCAAIPV 398 Query: 444 GLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFE 503 L+ES+LFGHE+GAFTGA +R G+FE AD ++FLDE+G++ E+Q K+LR LQE+E + Sbjct: 399 ALIESELFGHEKGAFTGAIEKRKGKFEQADGGTIFLDEIGELSPEMQVKILRFLQEKEIQ 458 Query: 504 RLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLA 563 +G N + + +VR+IAATNR+L+K VA FR DLYYR+NVFPI LP LRER DI L+ Sbjct: 459 CIGGNSLTKVNVRVIAATNRNLEKEVAAENFRLDLYYRINVFPITLPSLRERRSDIKELS 518 Query: 564 KAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPD 623 F K + I + + +WPGN+RELENVIE++ +L G +L L Sbjct: 519 IYFAEKFCSEFNKPFHGIVTSMMEEMIAYDWPGNIRELENVIEQSAILNDGKS-KLELKR 577 Query: 624 IVLPE---PETPPAAT---VVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTL 677 + + P T P T V ++ E E + I+ VLK+ +G V G GAAQ + +K TTL Sbjct: 578 TLTGKATIPVTTPIKTFEDVKNIQAETEREYIISVLKQADGRVRGANGAAQLMNIKPTTL 637 Query: 678 LSRMKRLGIDKSAL 691 S+M +L I + L Sbjct: 638 ESKMAKLKIRREDL 651 >UniRef50_O06645 Putative transcriptional activator HbpR n=1 Tax=Pseudomonas nitroreducens RepID=O06645_9PSED Length = 570 Score = 275 bits (702), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 132/240 (55%), Positives = 175/240 (72%), Gaps = 1/240 (0%) Query: 375 DSEFGEIIGRSEAMYSVLK-QVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRM 433 D + GE++ S A++ VL+ + VA++D+TVL+LGE+G+GK LIAR IH LS R ++ Sbjct: 223 DDQGGELVIGSSAVFKVLRHKTACVAETDATVLLLGESGSGKSLIAREIHRLSNRADQAF 282 Query: 434 VKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKL 493 V++NCAA+P L+ES+LFG ERGAFTGA+A R GRFE A + +LFLDE+ + + Q KL Sbjct: 283 VEVNCAAIPDQLIESELFGVERGAFTGATATREGRFEAAHQGTLFLDEIATLSMTAQSKL 342 Query: 494 LRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLR 553 LRVLQ E ERLGSN+ I T VRLIAATN DLKK V D FR DLYYRLNVFPI +PPLR Sbjct: 343 LRVLQNGELERLGSNRTIHTSVRLIAATNADLKKAVQDGHFREDLYYRLNVFPIQIPPLR 402 Query: 554 ERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTR 613 ER +DI L+ + ++R GR + I + ++ L +WPGN+RELENVIERA+++ + Sbjct: 403 ERRDDISLITSVLIARFSKRHGRKLKGISSAAMQVLIYHDWPGNIRELENVIERAIIMAQ 462 >UniRef50_Q6MMW8 Acetoacetate metabolism regulatory protein atoC n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MMW8_BDEBA Length = 470 Score = 275 bits (702), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 150/343 (43%), Positives = 219/343 (63%), Gaps = 15/343 (4%) Query: 356 LKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGK 415 L+ R + +LA++ + + D E EI+G S M V + + + D+TVL+ GE GTGK Sbjct: 124 LEARDLISSLAMSNPVFDDDIE-SEIVGGSSKMKEVFNLIYRLCKVDTTVLVRGENGTGK 182 Query: 416 ELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKS 475 EL+ARAIH S R + V +NC A+P L+ES+LFGHE+GAFTGA ++IG+F+LA+ Sbjct: 183 ELVARAIHFNSPRKSGAFVAINCGAIPENLMESELFGHEKGAFTGAVERKIGKFQLANNG 242 Query: 476 SLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFR 535 +LFLDE+G++ ++Q KLLRVLQE++F +GSN+ ++T R+IAATNR+L+KM+ + EFR Sbjct: 243 TLFLDEIGELRPDMQVKLLRVLQERKFTPVGSNREVKTTTRIIAATNRNLEKMMEEGEFR 302 Query: 536 SDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWP 595 DL+YRLNV PI LPPLRER +DI LA F K +++ GR I +I E L L + WP Sbjct: 303 EDLFYRLNVMPIFLPPLRERADDIEALAGNFIKKFSKQHGRQITAITPEALDMLKSYRWP 362 Query: 596 GNVRELENVIERAVLLTRGNVLQL-SLPDIVLPEPETPPAATVV----------ALEGED 644 GN+RELEN+IER+ ++ + + + SLPD + P+ T A + E Sbjct: 363 GNIRELENIIERSFIVENSHQITVDSLPDSIKLTPKDGADKTASVGYSGPLDFDAFKEEM 422 Query: 645 EYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 E + IV LK NG + A + + TLL ++++ GI+ Sbjct: 423 EKEFIVSALKANNGRINQTVAQAN---IPKNTLLRKIRKYGIN 462 >UniRef50_Q1D5E1 Sigma-54 dependent transcriptional regulator, Fis family n=4 Tax=Myxococcales RepID=Q1D5E1_MYXXD Length = 529 Score = 274 bits (701), Expect = 8e-72, Method: Compositional matrix adjust. Identities = 169/412 (41%), Positives = 240/412 (58%), Gaps = 33/412 (8%) Query: 294 GNQIQTLCLLPLMSGDTML-GVLK-LAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQ 351 G + +L +PL GD L GVL+ L + E FT + L IA +V+ A+ + YQ Sbjct: 128 GYRTTSLLAVPLRDGDGALYGVLQVLNRRGEDRFTDEDTQRLTAIASQVSTALQSTSLYQ 187 Query: 352 EIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGET 411 E+ R KE + V F IIG S + ++ + V A +D+TVL+ GE+ Sbjct: 188 ELQRAKE----------QPQVPVGYFFNRIIGESPQLQAIYRLVRKAAPTDATVLLRGES 237 Query: 412 GTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFEL 471 G+GKEL ARA+H R ++ +K++CAA+PA L+E++LFGHERGAFTGA + G+FE Sbjct: 238 GSGKELFARAVHVNGPRRDQPFIKVDCAALPATLIENELFGHERGAFTGADHRVPGKFEA 297 Query: 472 ADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVAD 531 A ++F+DE+G++PL +Q KLLRV+Q++EFER+G + ++ DVR++AAT+RDL +MVA+ Sbjct: 298 ASGGTVFIDEIGELPLPVQGKLLRVIQDREFERVGGTQAVKVDVRIVAATHRDLARMVAE 357 Query: 532 REFRSDLYYRLNVFPIHLPPLRER-PEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLS 590 FR DLYYR+ V + LPPLRER EDI LA+ F +ARR + A + L Sbjct: 358 GRFREDLYYRIKVVEVVLPPLRERGAEDIERLARHFVAAVARRHRLTPPRLSAAAVERLK 417 Query: 591 NMEWPGNVRELENVIERAVLLTRGNVLQ--LSLPD--------------IVLPEPETPPA 634 WPGNVRELEN IE AV+L G +L+ L LPD + P P Sbjct: 418 RYRWPGNVRELENCIESAVVLCEGEILEEHLPLPDVDRAALPPPAAAQGVNAPTAPAPLD 477 Query: 635 ATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 A ++ L E E + I+RVL G AA+ L + R TL ++K G+ Sbjct: 478 AGLLPL-AEVERRHILRVLDAVKG---NRTAAARVLAIGRNTLARKLKEYGL 525 >UniRef50_B9ZRC2 Transcriptional regulator, Fis family n=2 Tax=Chromatiales RepID=B9ZRC2_9GAMM Length = 473 Score = 274 bits (701), Expect = 8e-72, Method: Compositional matrix adjust. Identities = 159/340 (46%), Positives = 212/340 (62%), Gaps = 35/340 (10%) Query: 381 IIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAA 440 ++G M +V + V VA++D+T LILGETG+GKE+IARAIH S R ++ V +NC A Sbjct: 138 LVGVHPTMLAVKRLVAQVARTDATALILGETGSGKEVIARAIHAASDRADKPFVAVNCGA 197 Query: 441 MPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQ 500 +PA LLES+LFGHE+GAFTGA R GRFELA +LFLDE+GDMPL +Q KLLRVLQE+ Sbjct: 198 IPADLLESELFGHEKGAFTGAFTARTGRFELAGDGTLFLDEIGDMPLPMQVKLLRVLQER 257 Query: 501 EFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIP 560 FER+GSNK I T+ R+IAAT+R+L V + FR DL++RLNVFPI LPPLRER DIP Sbjct: 258 VFERVGSNKSISTNARIIAATHRNLDDAVTEGSFRQDLFFRLNVFPIELPPLRERASDIP 317 Query: 561 LLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLS 620 L A ++ R G + + LS + W GN+REL N++E+ ++ + L Sbjct: 318 SLVAALEDRL-REQGMTPAHLTPAVMAHLSQLPWKGNIRELANLLEQLAIMYPDLPVDLG 376 Query: 621 -LPDIVLPE--------PET---------PPAATVVALEG-------------EDEYQLI 649 LP V PE P++ P A +A EG + E ++I Sbjct: 377 QLPPRVRPEGIEDLTMPPQSDANGQAGSAPNGALGLAREGLPPEGVDLRGYLNDLEREMI 436 Query: 650 VRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKS 689 V L ET VVA AA+RLG++RTTL+ RM++ G+ K+ Sbjct: 437 VTALNETGQVVA---RAARRLGMRRTTLVERMRKFGLGKA 473 >UniRef50_P27713 Nif-specific regulatory protein n=3 Tax=Burkholderiales RepID=NIFA_HERSE Length = 542 Score = 274 bits (700), Expect = 9e-72, Method: Compositional matrix adjust. Identities = 176/464 (37%), Positives = 259/464 (55%), Gaps = 27/464 (5%) Query: 193 ITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQHPAHEQ 252 I+ + S LD+ + + EV + + + + + L +L + S L + + Sbjct: 20 ISKILGSSLDLSKTLREVLNVLSAHLETKRVLLSLMQD-SGELQLVSAIGLSYEEFQSGR 78 Query: 253 SEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQ-----TLCLLPLMS 307 V E +T ++F+++ +++ DLA L T Q Q + +P+ + Sbjct: 79 YRVGEG--ITGKIFQTETPIVVR-----DLAQEPLFLARTSPRQSQDGEVISFVGVPIKA 131 Query: 308 GDTMLGVLKLAQCEEKVFTTTN--LNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENL 365 MLGVL + + + + + + LL +A + V Y+ + +++L +E Sbjct: 132 AREMLGVLCVFRDGQSPSRSVDHEVRLLTMVANLIGQTVR---LYRSVAAERQQLQEEKR 188 Query: 366 ALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNL 425 L+ QL + +IG S+AM V QV A S ST+L+ GE+GTGKE+IARAIH L Sbjct: 189 QLSRQLQG-KYKLDNVIGISKAMQEVFAQVHQSAPSRSTMLLRGESGTGKEVIARAIHYL 247 Query: 426 SGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDM 485 S R + +K+NCAA+ LLES+LFGHE+GAFTGA +R GRFELA +LFLDE+G++ Sbjct: 248 SPRKDGPFIKVNCAALSETLLESELFGHEKGAFTGAQGERKGRFELAHGGTLFLDEIGEI 307 Query: 486 PLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVF 545 Q KLLRVLQE+EFER+G ++ I+ DVRL+ ATNRDL+K VA EFR+DLYYR+NV Sbjct: 308 SPAFQAKLLRVLQEREFERVGGSRSIKVDVRLVTATNRDLEKAVAKGEFRADLYYRINVV 367 Query: 546 PIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVI 605 I +PPLRER EDIP L + F K R + ++ + ++ + N WPGNVRELEN + Sbjct: 368 SIFIPPLRERREDIPYLVEHFLEKFRVENQRAMVAMSPQAMKVMMNCYWPGNVRELENCV 427 Query: 606 ERAVLLTRGNVL--------QLSLPDIVLPEPETPPAATVVALE 641 ER + RG+++ Q VL EP VV LE Sbjct: 428 ERTATMMRGDLITEVHFSCQQNKCLTKVLHEPGQQQPVVVVPLE 471 >UniRef50_B0K647 Sigma54 specific transcriptional regulator, Fis family n=12 Tax=Firmicutes RepID=B0K647_THEPX Length = 544 Score = 274 bits (700), Expect = 9e-72, Method: Compositional matrix adjust. Identities = 148/323 (45%), Positives = 210/323 (65%), Gaps = 15/323 (4%) Query: 374 VDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRM 433 +D F IIG S + L A++DSTVLI GE+GTGKEL+A AIH S R ++ Sbjct: 224 LDKAFDIIIGNSGKLKDALTIASKAAETDSTVLIRGESGTGKELVANAIHYASKRKDKPF 283 Query: 434 VKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKL 493 +++NCAA+P LLES+LFGHERGAFTGA Q+IG+FELAD ++FLDE+GD+P E+Q KL Sbjct: 284 IRVNCAAIPVTLLESELFGHERGAFTGAVTQKIGKFELADGGTIFLDEIGDIPPEIQVKL 343 Query: 494 LRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLR 553 LRV+QE+EFER+G K I+ DVR+IAATN+DL+K + + FR DLYYRLNV P+ LPPLR Sbjct: 344 LRVIQEKEFERVGGIKTIKVDVRIIAATNKDLEKAIKEGTFREDLYYRLNVIPVILPPLR 403 Query: 554 ERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTR 613 ER DIPLL + F K+ ++L +N+ + + ++ L +WPGN+RELEN+IER + L+ Sbjct: 404 ERRGDIPLLVEHFIEKLNKKLNKNVKKVTKKAMQALIYYDWPGNIRELENIIERCITLSD 463 Query: 614 GNVLQL-SLPDIVLPEPETPPAATVVALEGED---------EYQLIVRVLKETNGVVAGP 663 + + LP + E T ++ L GE+ EY++I ++ Sbjct: 464 TDYIDYEDLPQYIRNETTTVSDDDIIYL-GENSELLTMEEYEYKIIKAAIQRYKSF---- 518 Query: 664 KGAAQRLGLKRTTLLSRMKRLGI 686 A + LGL T+ ++ ++ G+ Sbjct: 519 NKAGKVLGLTHKTIAAKARKFGL 541 >UniRef50_P05407 Nif-specific regulatory protein n=11 Tax=Rhizobiales RepID=NIFA_BRAJA Length = 582 Score = 274 bits (700), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 137/237 (57%), Positives = 181/237 (76%), Gaps = 1/237 (0%) Query: 381 IIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAA 440 IIG S A+ ++L+++ +VA+S+STVL+ GE+GTGKEL+A+AIH S R R VK+NCAA Sbjct: 230 IIGDSPALSALLEKIVVVARSNSTVLLRGESGTGKELVAKAIHESSVRAKRPFVKLNCAA 289 Query: 441 MPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQ 500 +P +LES+LFGHE+GAFTGA + R GRFELADK +LFLDE+G++ Q KLLRVLQEQ Sbjct: 290 LPETVLESELFGHEKGAFTGAVSARKGRFELADKGTLFLDEIGEISPPFQAKLLRVLQEQ 349 Query: 501 EFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIP 560 EFER+GSN I+ DVR+IAATNR+L++ VA EFR+DLYYR++V P+ LPPLRER DIP Sbjct: 350 EFERVGSNHTIKVDVRVIAATNRNLEEAVARSEFRADLYYRISVVPLLLPPLRERRSDIP 409 Query: 561 LLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVL 617 LLA+ F K GR++ ++ A + L + ++PGNVRELEN IER L+ G + Sbjct: 410 LLAREFLRKFNSENGRSL-TLEASAIDVLMSCKFPGNVRELENCIERTATLSAGTSI 465 >UniRef50_Q1PYK0 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYK0_9BACT Length = 456 Score = 273 bits (699), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 148/316 (46%), Positives = 203/316 (64%), Gaps = 11/316 (3%) Query: 353 IHRLKER--LVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGE 410 I R+ ER L+ EN +NVD + + ++ M + +Q++ +AQS ++VLI GE Sbjct: 115 ISRVNERQKLIAEN-KYWRSASNVDEKSEPVYSKNSKMSQIYEQLKKIAQSKASVLIQGE 173 Query: 411 TGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFE 470 +GTGKEL+ARAIH S R + +++NCAA+ LLES+LFGHERGA+TGA A+RIGRFE Sbjct: 174 SGTGKELVARAIHYFSPRCEKPFIRVNCAALAESLLESELFGHERGAYTGAVAKRIGRFE 233 Query: 471 LADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVA 530 LA++ +L LDEV ++ +Q KLLRVL+E+EFER+G K I+ DVR++A TNRDL K + Sbjct: 234 LANEGTLLLDEVSEISPNIQAKLLRVLEEEEFERVGGEKTIKIDVRIVATTNRDLAKEIQ 293 Query: 531 DREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLS 590 FR DL+YRLNV PIHLPPLRER EDIPLLA + K + ++ SI + LS Sbjct: 294 KGTFREDLFYRLNVVPIHLPPLRERREDIPLLANTYLEKYSSENNSSVKSIEKRAMDYLS 353 Query: 591 NMEWPGNVRELENVIERAVLLTRGNVLQL----SLPDIVLPEPETPPAATVVALEGED-- 644 WPGNVREL+N+++RAV++ L L SL DI E + + G+ Sbjct: 354 QYNWPGNVRELKNIMQRAVVMGSSEELGLENFTSLIDIKKSEHTMCNDSVNIKKNGQSIE 413 Query: 645 --EYQLIVRVLKETNG 658 E +LI L++T G Sbjct: 414 DAEKELIFTTLEKTGG 429 >UniRef50_C4XJ05 Fis family transcriptional regulator n=2 Tax=Desulfovibrio RepID=C4XJ05_DESMR Length = 447 Score = 273 bits (698), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 167/370 (45%), Positives = 225/370 (60%), Gaps = 31/370 (8%) Query: 330 LNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSE--FGEIIGRSEA 387 L+ RQI A + E+ RL E + D+ + E L+ +D+ F ++G S A Sbjct: 86 LHSTRQIDVLAQTPAPAARSRDELDRL-EGVFDQ---VVELLSAMDARALFPNMVGESRA 141 Query: 388 MYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLE 447 M +V Q+ VA +D+TVL+LGE+G GKEL A ++H SGR V +NCAA+P GLLE Sbjct: 142 MRAVFSQLLKVAATDATVLLLGESGVGKELAALSLHEKSGRAKGPFVAVNCAAIPEGLLE 201 Query: 448 SDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGS 507 S+LFGHERGAFTGA A++IG+FE A + +LFLDE+GDMP E Q K+LR ++ ++FER+G Sbjct: 202 SELFGHERGAFTGAVARKIGKFEKAAQGTLFLDEIGDMPPETQAKILRAIESRQFERVGG 261 Query: 508 NKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAF- 566 K ++ DVR++AAT+RDL +M+ FR DLY+RLNVFP+ LPPLR+R EDIPLLA F Sbjct: 262 GKPLRLDVRVVAATHRDLPEMIRQGRFREDLYHRLNVFPVRLPPLRDRREDIPLLAGRFL 321 Query: 567 -TFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGN-VLQLSLPDI 624 F+ RL E L+ L +WPGNVREL+NV+ERA +L G+ + LP + Sbjct: 322 EGFRPGARLS-------VEALQRLLAHDWPGNVRELKNVLERATVLAGGDEIAPRHLPGL 374 Query: 625 VLPEPETPPAATVVALEGED--------EYQLIVRVLKETNGVVAGPKGAAQRLGLKRTT 676 PA E D E LI L T GV + AA LG+K + Sbjct: 375 S----GQGPAEATAGDEAADLDSRLAAYERTLIEAALSRTGGVQS---RAAALLGIKERS 427 Query: 677 LLSRMKRLGI 686 L R+K+LGI Sbjct: 428 LWHRVKKLGI 437 >UniRef50_A5D2K0 Transcriptional regulator n=2 Tax=Clostridia RepID=A5D2K0_PELTS Length = 568 Score = 273 bits (697), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 149/329 (45%), Positives = 208/329 (63%), Gaps = 14/329 (4%) Query: 367 LTEQLNNVDSE---FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIH 423 LT++L V + F +IIG S + + E AQS+STVLILGE+GTGKEL+A AIH Sbjct: 240 LTDKLGQVTTSKYSFDDIIGDSPELRKCITLAEKSAQSNSTVLILGESGTGKELLAHAIH 299 Query: 424 NLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVG 483 S R +K+NCAA+P LLES+ FG+ +GAFTGA +IG+FELA ++FLDE+G Sbjct: 300 AASMRRENPFIKVNCAAIPDTLLESEFFGYAKGAFTGAVKSKIGKFELAHGGTIFLDEIG 359 Query: 484 DMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLN 543 DM L LQ KLLRVLQE EFER+G N+ I+ DVR+IAATNR+L++++ FR DLYYRLN Sbjct: 360 DMNLLLQAKLLRVLQEMEFERVGGNQTIKVDVRVIAATNRNLRELIRQGRFREDLYYRLN 419 Query: 544 VFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELEN 603 V I +PPLR R ED+P L + R+LG+N+ I + L + +WPGNVRELEN Sbjct: 420 VVEITMPPLRARKEDLPALVSHLITSLNRKLGKNVKGISKDAEEVLFSYDWPGNVRELEN 479 Query: 604 VIERAV------LLTRGNVLQLSLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETN 657 VIER + +LT+ N +Q + + ++ +E +E LI + + + Sbjct: 480 VIERVMVTADEEILTKKNFIQ----HVNQFRMSSERDVDLMPIEQMEEM-LIRKAISKFG 534 Query: 658 GVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 V G + AAQ L + TL +++K++ + Sbjct: 535 NTVEGKRRAAQALNISLATLYNKLKKIKV 563 >UniRef50_D1R5K3 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R5K3_9CHLA Length = 462 Score = 273 bits (697), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 137/263 (52%), Positives = 186/263 (70%), Gaps = 3/263 (1%) Query: 353 IHRLKERL--VDENLALTEQLNNVDS-EFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILG 409 I + KE L V EN L +Q++ DS +IIG S M +L+ V VAQS+++V I G Sbjct: 113 IEKAKEHLSLVQENQYLRQQVSTGDSRNHFQIIGESPIMKQILRDVTRVAQSNASVFING 172 Query: 410 ETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRF 469 E+GTGKE+IA+AIH S R+ +K+NCAA+P L+ES+ FGHE+GAFTGA+ +R+GRF Sbjct: 173 ESGTGKEVIAQAIHANSARSQFPFIKVNCAAIPETLIESEFFGHEKGAFTGANFKRLGRF 232 Query: 470 ELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMV 529 ELA K +L LDE+ ++PL +Q KLLR +QEQEFER+G +K I+ DVRLI+ +NRD+K + Sbjct: 233 ELAHKGTLLLDEITEIPLAVQAKLLRAIQEQEFERVGGSKPIKVDVRLISTSNRDMKDAI 292 Query: 530 ADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTL 589 A + R DLYYRLNV PI+LPPLR+RPEDI LA F K+ + + E+++ L Sbjct: 293 AHKILREDLYYRLNVVPIYLPPLRDRPEDILPLAHYFLEKMCMENHKQAKTFSKESIKKL 352 Query: 590 SNMEWPGNVRELENVIERAVLLT 612 WPGNVREL N++ERAV++T Sbjct: 353 VGYAWPGNVRELANIVERAVVMT 375 >UniRef50_Q3AR86 DNA-binding protein Fis / transcriptional regulator, Fis family n=11 Tax=Chlorobiaceae RepID=Q3AR86_CHLCH Length = 549 Score = 273 bits (697), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 142/310 (45%), Positives = 203/310 (65%), Gaps = 6/310 (1%) Query: 381 IIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAA 440 IIG ++ M S+ ++ +A++ +T L+LGE+G GKEL+A AIH S R + +K NCAA Sbjct: 237 IIGNTKPMVSLYSMIDKIAKTSATTLVLGESGVGKELVASAIHFKSRRAEKPFIKFNCAA 296 Query: 441 MPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQ 500 +P ++ES+LFGHE+GAFTGA A R GRFE+A+ ++FLDEVG++ L +Q KLLR+LQE+ Sbjct: 297 LPENIVESELFGHEKGAFTGALATRHGRFEMANNGTIFLDEVGELSLSVQAKLLRILQEK 356 Query: 501 EFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIP 560 EFER+G +K I+ DVR+IAATNR+L++++ +FR DL+YRLN+FPI +PPLRER DI Sbjct: 357 EFERVGGSKTIKVDVRVIAATNRNLEELIRQGQFREDLFYRLNIFPITVPPLRERKTDIL 416 Query: 561 LLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQ-L 619 LLA F K + + + I + L WPGNVREL+N IERAV+L+ NV+ Sbjct: 417 LLADYFVEKYNKANQKGVRRISTTAIDMLMRYHWPGNVRELQNCIERAVILSEDNVIHGY 476 Query: 620 SLPDIV--LPEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTL 677 LP + TP ++ E ++I+ LK T G ++ AA +LGL + Sbjct: 477 HLPPTLQTAESSGTPYTGSLQQKLDAIEKEMIIEALKRTQGNMS---RAAMQLGLSERIM 533 Query: 678 LSRMKRLGID 687 R+K+ ID Sbjct: 534 GLRIKKFNID 543 >UniRef50_A0LJL7 Two component, sigma54 specific, transcriptional regulator, Fis family n=21 Tax=Bacteria RepID=A0LJL7_SYNFM Length = 476 Score = 273 bits (697), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 162/357 (45%), Positives = 225/357 (63%), Gaps = 22/357 (6%) Query: 338 ERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEM 397 ER+ +++ NAL + HRL+E ENL ++ + + GRSEA+ S+ +Q+ Sbjct: 108 ERILVSIKNALDF---HRLEE----ENLLWRQKAHRTS----HMTGRSEAVESLREQIRR 156 Query: 398 VAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGA 457 A +++TVLI GE GTGKEL AR IH LS R++R MV++NCAA+P L+ES+LFGHE+GA Sbjct: 157 AAPTNATVLITGENGTGKELAARMIHQLSKRSHRPMVEVNCAAIPEDLIESELFGHEKGA 216 Query: 458 FTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRL 517 FTGA +R GRF++A+ +LFLDE+GDM L Q K+LR+LQEQ FER+G ++ IQ DVR+ Sbjct: 217 FTGAHERRRGRFDVANGGTLFLDEIGDMSLRTQAKILRILQEQVFERVGGSRTIQVDVRV 276 Query: 518 IAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRN 577 +AATN+D+++ + FR DLYYRLNV PI +PPLR+R +DIPLL + F +A Sbjct: 277 VAATNKDIQREIEAGRFRQDLYYRLNVIPIFVPPLRDRLQDIPLLVEDFLDDMAAESAMG 336 Query: 578 IDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGN-VLQLSLP-DIV--LPEP--ET 631 I L WPGN+REL N IER V++T G + LP D + LP+P E Sbjct: 337 RKEIDPAVFGPLQQYSWPGNIRELRNFIERMVIMTPGQRIGPRDLPLDFLNRLPKPPEEA 396 Query: 632 PP--AATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 P AT+ E ++R L E V+ A ++GL+R+ L +MK LGI Sbjct: 397 GPYQCATLREARSVFERAYLLRKLDEFAWNVS---LTAAQVGLERSHLHRKMKALGI 450 >UniRef50_C9RS71 Transcriptional regulator, NifA subfamily, Fis Family n=5 Tax=Bacteria RepID=C9RS71_FIBSS Length = 509 Score = 272 bits (696), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 162/404 (40%), Positives = 244/404 (60%), Gaps = 20/404 (4%) Query: 293 WGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVA-IAVDNALAYQ 351 + Q+ +C+ PL+ ++G L + + V +T+L+ + E +A I D A Sbjct: 112 YETQVAFICV-PLIHDGQVIGTLSI---DRPVDGSTDLDRDVALLEIIANITGDAANECI 167 Query: 352 EIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGET 411 E+H +E +++EN L + L+N GE++G M V +QV VA SD+TVLI G + Sbjct: 168 ELHGEREAMLEENRKLRDMLSN---NPGELVGNCREMRQVYEQVRQVAPSDATVLIRGGS 224 Query: 412 GTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFEL 471 GTGKE+IARAI NLS R ++ + +NCAA+P L+ES+LFGHE+GAFTGA +RIGR E Sbjct: 225 GTGKEMIARAIVNLSARKDKPFITLNCAALPENLVESELFGHEKGAFTGALNRRIGRAEA 284 Query: 472 ADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVAD 531 A+ +LFLDEVGD+ ++ Q KLLR LQE+ F R+GSN+ + +DVR +AAT+R+L++++A Sbjct: 285 ANGGTLFLDEVGDLTMQTQVKLLRFLQERTFSRVGSNEELHSDVRFLAATSRNLEELIAQ 344 Query: 532 REFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSN 591 +FR DL+YRLN+FPI +P L +R DI LLA+ F K+ R + + + + L + Sbjct: 345 GKFREDLFYRLNIFPITMPDLAKRKSDIILLAEHFIEKMNLRYNKKVGRLSTTAINLLMS 404 Query: 592 MEWPGNVRELENVIERAVLLTRGNVLQ-LSLP-----DIVLPEPETPPAATVVALE---G 642 WPGNVRELEN IER VL + + +LP + + P+ + LE Sbjct: 405 YHWPGNVRELENCIERGVLTATDDCIHSYNLPPSLQTSLSVGSVGGTPSDKIAPLEVMMD 464 Query: 643 EDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 E ++I +K +G ++ A + LG+ + RM +LGI Sbjct: 465 NYEREIITEAIKRNDGNIS---AAGRDLGVSPRMMNYRMNKLGI 505 >UniRef50_C3WG76 Sigma-54 dependent transcriptional regulator n=2 Tax=Fusobacterium RepID=C3WG76_FUSMR Length = 588 Score = 272 bits (696), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 150/356 (42%), Positives = 228/356 (64%), Gaps = 20/356 (5%) Query: 345 DNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDST 404 ++A +++I + ++EN+A E NN +I G SEA + + + +A + ST Sbjct: 240 NSAFIFEDIKK-----INENIA--EITNNNVISLNDIYGNSEATKKLKENILKIADTSST 292 Query: 405 VLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQ 464 VLI GE+GTGKEL+AR++H+ S R N+ V +NC+A+P LLES+LFG+ +GAFTGA+ Sbjct: 293 VLITGESGTGKELVARSLHSHSNRKNKPFVVINCSAIPDSLLESELFGYVKGAFTGANNN 352 Query: 465 -RIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNR 523 RIG+FELA+ +FLDE+GDMPL LQ K+LRV+QE++ ER+GSNK I D+++IAATN Sbjct: 353 GRIGKFELANTGVIFLDEIGDMPLYLQAKILRVIQEKKIERIGSNKSIDLDIKIIAATNV 412 Query: 524 DLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPA 583 +L++ + +++FRSDLYYRLNV P L PLRER EDI + + K R G+NI SI Sbjct: 413 NLEEKIKEQKFRSDLYYRLNVIPFKLLPLRERKEDILPIIEKLIKKYNRISGKNIISIDD 472 Query: 584 ETLRTLSNMEWPGNVRELENVIERAVLLT-RGNVLQLSL--PDIVLPEPETPPAATVVAL 640 E + + +WPGNVRELENVIE ++ ++L SL +I PP ++ + + Sbjct: 473 EVKQAFLSYDWPGNVRELENVIELMFNISGNSSILNSSLLPENISKKSVSNPPKSSQIII 532 Query: 641 EG-EDEYQ--------LIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 + D+++ I++ L++ G K ++++G+ TTL ++KR GI+ Sbjct: 533 KNPSDDFENFDIIEKNYILQGLEKFGNTTEGKKIISEKIGIGLTTLYRKLKRFGIE 588 >UniRef50_P12626 Nitrogen fixation protein anfA n=11 Tax=Bacteria RepID=ANFA_AZOVI Length = 533 Score = 272 bits (696), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 190/510 (37%), Positives = 268/510 (52%), Gaps = 28/510 (5%) Query: 189 ILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQHP 248 IL I+ + D+ + +S V + + + + L R + I+ + L ++ Sbjct: 33 ILYKISQIITGNADLADALSIVLGVMQQHLKMQRGIVTLYDMRAETIFIHDSFGLTEEEK 92 Query: 249 AHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSG 308 V E G + V K ++ L E D R+ G +P+M Sbjct: 93 KRGIYAVGE-GITGKVVETGKAIVARRLQEHPDFLGRTRV--SRNGKAKAAFFCVPIMRA 149 Query: 309 DTMLGVLKLAQCEEKVFTTTNL-----NLLRQIAERVAIAVDNALAYQEIHRLKERLVDE 363 +LG + E+V+ L LL IA +A V+ L + I R+ RL +E Sbjct: 150 QKVLGTI----AAERVYMNPRLLKQDVELLTMIATMIAPLVELYL-IENIERV--RLENE 202 Query: 364 NLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIH 423 N L L + IIG S+ M V + + VA + +TVLILGE+G GKEL+A AIH Sbjct: 203 NRRLKHALKE-RFKPSNIIGNSKPMQEVYELIHKVASTKATVLILGESGVGKELVANAIH 261 Query: 424 NLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVG 483 S +V NCA +P L ES+LFGHE+G+FTGA G FE AD ++FLDEVG Sbjct: 262 YNSPNAEAALVTSNCAPLPENLAESELFGHEKGSFTGALTMHKGCFEQADGGTIFLDEVG 321 Query: 484 DMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLN 543 ++ +Q KL+RVLQ + FER+G +K ++ DVR+IAATNR+L +MV FR DLYYRLN Sbjct: 322 ELSPTVQAKLVRVLQNRTFERVGGSKPVKVDVRIIAATNRNLVEMVEQGTFREDLYYRLN 381 Query: 544 VFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELEN 603 VFPI +PPLRER D+ LA F +R G+N+ I L L + WPGNVRELEN Sbjct: 382 VFPITVPPLRERGSDVIALADHFVSAFSRENGKNVKRISTPALNMLMSYHWPGNVRELEN 441 Query: 604 VIERAVLLTRGNVLQ-LSLPDIVLPEPETPPAATVVALEGED-----EYQLIVRVLKETN 657 V+ERAV+L+ +V+ +LP + E+ T L E+ E ++IV LK ++ Sbjct: 442 VMERAVILSDDDVIHSYNLPPSLQTSKES---GTAFGLTLEEKIKAVECEMIVEALKNSS 498 Query: 658 GVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 G + AA+ LGL R L RM+R GI Sbjct: 499 GHIG---EAAKELGLARRMLGVRMERYGIS 525 >UniRef50_Q0SQI9 Phosphocarrier HPr/sensory box protein/sigma-54 dependent transcriptional regulator n=21 Tax=Clostridium RepID=Q0SQI9_CLOPS Length = 668 Score = 272 bits (696), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 132/254 (51%), Positives = 179/254 (70%), Gaps = 1/254 (0%) Query: 375 DSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMV 434 +S F IIG + + ++ + +++ STVLI GE+GTGKELIA+AIHN S R N+ V Sbjct: 352 NSSFNNIIGSTRTLKDIMYMCQKASETTSTVLIRGESGTGKELIAKAIHNNSNRKNKPFV 411 Query: 435 KMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLL 494 ++NCA++P LLES+LFG+E+GAFTGA + G+F +AD ++FLDE+GDMPL +Q KLL Sbjct: 412 RVNCASIPENLLESELFGYEKGAFTGAVQSKPGKFAIADTGTIFLDEIGDMPLSMQVKLL 471 Query: 495 RVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRE 554 RVLQE+E E +G DVR+IAATNR+L++M+ D FR DLYYRLNV I+LPPLRE Sbjct: 472 RVLQEREIESVGGITPKNIDVRVIAATNRNLEEMIEDGSFREDLYYRLNVLGINLPPLRE 531 Query: 555 RPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRG 614 R EDIP LA+ F K+ ++L + I I + L L WPGN+RELEN++ERA+ L G Sbjct: 532 RKEDIPELAEHFITKLNKKLHKTILGIKQDALNLLIEYSWPGNIRELENIMERAINLCDG 591 Query: 615 NVLQLS-LPDIVLP 627 + + S LP + P Sbjct: 592 DYIDSSYLPSYLKP 605 >UniRef50_D0LWE6 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LWE6_HALO1 Length = 684 Score = 272 bits (695), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 172/442 (38%), Positives = 250/442 (56%), Gaps = 18/442 (4%) Query: 253 SEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTML 312 +EV + ++ RV S+ +I + +++LA E +L G +I ++ +PL GD + Sbjct: 253 AEVRASRSVLRRVL-SERAAVITANAQEELASSESIL----GGKILSMVAVPLWRGDEIT 307 Query: 313 GVLKL-AQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQL 371 G+++ + + + +L + + + A+A+DNA + +ERL EN L + Sbjct: 308 GLIQADNRASAGMLSERDLEVALLLGAQAALAIDNAALVSRLKVAEERLRGENTYLKRRE 367 Query: 372 NNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNR 431 N+ F IIG S AM ++ Q+ V + +TV I GETGTGKELIA AIH S R ++ Sbjct: 368 ENL--RFENIIGESSAMQAIFDQLRKVVDTRATVCIEGETGTGKELIATAIHYESNRRDK 425 Query: 432 RMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQP 491 V NCAA+P LLES+LFGH++GAFT A + G FE+AD +LFLDE+G+MPL LQ Sbjct: 426 MFVAQNCAALPENLLESELFGHKKGAFTSADTDKKGLFEIADGGTLFLDEIGEMPLSLQA 485 Query: 492 KLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPP 551 K+LRVLQE LGS + Q D R+I ATNRDL V FR DLYYRL VFPI LPP Sbjct: 486 KVLRVLQEGTIRPLGSTRERQVDARIICATNRDLAAEVEKGSFRQDLYYRLVVFPIRLPP 545 Query: 552 LRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLL 611 LRER EDIP L + F + +R + + E L +S +WPGN+RELEN ++R V+ Sbjct: 546 LRERREDIPPLCEHFLKRYSREFRQEVLGFSQECLDVMSTYQWPGNIRELENEVQRLVIQ 605 Query: 612 T-RGNVLQLSLPDIVLPEPE------TPPAATVVALEGEDEYQLIVRVLKETNGVVAGPK 664 T G+ +++S L + E P T+ A+ + E L+ L+E + Sbjct: 606 TDAGSWIEVSELSPRLRKVEGTLARIAPKKGTLKAMMEQVERWLLAEALREHDN---NKT 662 Query: 665 GAAQRLGLKRTTLLSRMKRLGI 686 AQ LG+ R L ++ + + Sbjct: 663 RTAQSLGITREGLHKKLSKYSM 684 >UniRef50_B5YL21 Acetoacetate metabolism regulatory protein AtoC n=3 Tax=Bacteria RepID=B5YL21_THEYD Length = 446 Score = 272 bits (695), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 141/322 (43%), Positives = 212/322 (65%), Gaps = 12/322 (3%) Query: 369 EQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGR 428 ++L +++ F EIIG+S+ + + ++MVA+S++ VLI GE+GTGKEL+ARAIH S R Sbjct: 124 QKLEKIETPFPEIIGKSKTIQEIFYIMQMVAESNANVLITGESGTGKELVARAIHKNSLR 183 Query: 429 NNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLE 488 ++ + ++C +P LLES+LFGHE+GAFTGA+ ++ G ELA++ ++FLDE+G++P+ Sbjct: 184 KSKPFIIVDCTTIPENLLESELFGHEKGAFTGATERKTGLIELANEGTVFLDEIGELPML 243 Query: 489 LQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIH 548 LQ KLLR LQE+E +R+GS + I+ DVR+I+ATN+DL+K + + FR DLY+RLNV I+ Sbjct: 244 LQKKLLRFLQEKEIQRIGSTQRIKVDVRVISATNKDLEKAIKEGSFREDLYWRLNVVRIN 303 Query: 549 LPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERA 608 LPPLRER EDIPLL F K ++ + I + E + L N WPGN+REL NVIERA Sbjct: 304 LPPLRERKEDIPLLVNHFLNKFSKENNKPIPQLEPEVMNALINYYWPGNIRELANVIERA 363 Query: 609 VLLTRGNVLQLS-LPDIVLPEPETPPAATVVALEGEDEYQLI----VRVLKETNGVVAGP 663 V+L+ ++ + LP + + T++ E+ + L+ +LK N Sbjct: 364 VVLSPSGLISIKHLPRRI----QENTGWTIIK---ENTFNLLEVEKALILKALNSTGWNQ 416 Query: 664 KGAAQRLGLKRTTLLSRMKRLG 685 AA+ LG+ R L ++MK G Sbjct: 417 TKAAEILGISRKQLRTKMKHHG 438 >UniRef50_Q1JZC1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JZC1_DESAC Length = 455 Score = 272 bits (695), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 155/358 (43%), Positives = 223/358 (62%), Gaps = 25/358 (6%) Query: 338 ERVAIAVDNALAYQEIHRLKERLVDENLALTEQL-NNVDSEFGEIIGRSEAMYSVLKQVE 396 E + + VD AL Y +L +EN L +L N D ++G S AM S+ Q+ Sbjct: 107 EEMLLTVDKALDY-------SKLQNENWLLRRELEQNRDRT---LVGNSPAMESLRNQIA 156 Query: 397 MVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERG 456 VA + +++LI GE+GTGKEL+A+A+H LS R+N+ +V +NCAA LLES+LFGHERG Sbjct: 157 QVAPAKTSILITGESGTGKELVAQALHRLSPRSNKALVSINCAAFAENLLESELFGHERG 216 Query: 457 AFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVR 516 AFTGA ++ G E++D +LFLDE+G+ PL LQPKLLRVLQE+ F R+G I +D+R Sbjct: 217 AFTGALERKKGLMEVSDGGTLFLDEIGEFPLNLQPKLLRVLQEKTFRRVGGTAEISSDIR 276 Query: 517 LIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGR 576 +IAAT+R+L++M+ + FR DLYYRLNV +HLPPLR R EDIPLL++ F +++R +G Sbjct: 277 IIAATHRNLEQMITEGTFREDLYYRLNVVSLHLPPLRHRREDIPLLSQLFLERLSRDMGC 336 Query: 577 NIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVL-QLSLPDIVLPE-PETPPA 634 + + ++ L + EWPGNVREL+N++ER +L G L Q LP + P Sbjct: 337 PLPQLSSQAQHDLYHYEWPGNVRELQNILERGLLFCDGPTLEQNHLPQQFHSQAPHHNGC 396 Query: 635 ATVVALEGED---------EYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKR 683 + A+ + E +LI L + GV A AA+ LG+ R+ L ++K+ Sbjct: 397 SETAAMPLQQPLPEHLETIEQKLIQAALIDARGVQA---KAAELLGISRSNLQYKLKK 451 >UniRef50_C9KM56 Sigma-54 dependent transcriptional regulator/sensory box protein n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KM56_9FIRM Length = 560 Score = 271 bits (694), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 143/315 (45%), Positives = 203/315 (64%), Gaps = 11/315 (3%) Query: 378 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMN 437 F IG+S + VL A S + VLI GE+GTGKE+IA IH SGR +++N Sbjct: 250 FANYIGKSGKVVDVLALASKAADSSANVLIRGESGTGKEVIAEGIHYASGRRRGPFIRVN 309 Query: 438 CAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVL 497 C A+P LLES+LFGHE+GAFTGA +++G+FELA+ ++FLDE+G++ LQ KLLRVL Sbjct: 310 CGAIPGALLESELFGHEKGAFTGAVRRKLGKFELANHGTIFLDEIGELDKNLQVKLLRVL 369 Query: 498 QEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPE 557 Q++EF+R+G + I DVR+IAATNRDL+ MV + FR DLYYRLNV PI LPPLR+RP+ Sbjct: 370 QQKEFDRVGGEETIHVDVRIIAATNRDLEAMVREGTFRDDLYYRLNVIPIILPPLRDRPD 429 Query: 558 DIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVL 617 DIPLL + F KI++ +++ I + ++ + WPGNVRELENVIER + L +++ Sbjct: 430 DIPLLVEHFIEKISKENKKDVRGITPDAMQMFMHYRWPGNVRELENVIERVITLMDTDLI 489 Query: 618 QLS-LP-----DIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLG 671 + LP DI E ++ TV+ E E E Q+I L++ GAA+ L Sbjct: 490 TAAMLPSYIKGDIAGREVQSLADDTVLPWE-EYEKQIIANALRQGTSF----NGAAKLLR 544 Query: 672 LKRTTLLSRMKRLGI 686 + T+ ++ ++ G+ Sbjct: 545 ISHKTVAAKARKYGL 559 >UniRef50_C7LR14 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LR14_DESBD Length = 476 Score = 271 bits (694), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 145/321 (45%), Positives = 209/321 (65%), Gaps = 8/321 (2%) Query: 375 DSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMV 434 ++ F ++G S M V +E AQSD+ V I GE+GTGKEL+ARAIH+L R+++ V Sbjct: 159 ETMFHGMVGHSAQMRRVFHLIEKAAQSDAPVFIYGESGTGKELVARAIHDLGPRSDQPYV 218 Query: 435 KMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLL 494 + NCAA+ LLES+LFGH +GAFTGA R GRFE A +FLDE+GD+P+ +Q KLL Sbjct: 219 QFNCAALNEALLESELFGHVKGAFTGAFRHRQGRFEAAHGGDIFLDEIGDLPMPVQVKLL 278 Query: 495 RVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRE 554 RVL+ + FER+G N+ + DVR+I ATN+ L ++++ +FR DL+YR+NV P+HLP LRE Sbjct: 279 RVLETKTFERVGDNRQLSVDVRIITATNKVLPELISQGQFREDLFYRINVIPVHLPSLRE 338 Query: 555 RPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERA-VLLTR 613 R EDIPLLA F ++ + ++I + +TLR + WPGNVREL++ +E A VL Sbjct: 339 RKEDIPLLADYFIQRLRMKSDKDIKGLSPQTLRLFMDYSWPGNVRELKSSLEYAFVLADH 398 Query: 614 GNVLQLSLP-DIVLPEPETPPAATVVALEGED-EYQLIVRVLKETNGVVAGPKGAAQRLG 671 G++ LP ++V+ P P A G D + Q +V+ L + G AA+ LG Sbjct: 399 GHIEPEHLPHNVVVTAP--PVAEPRYGNPGHDSQRQQLVQALHQAGG---NKSEAARILG 453 Query: 672 LKRTTLLSRMKRLGIDKSALI 692 + R T+L+RM++ GID + +I Sbjct: 454 INRVTVLNRMRKHGIDMTRVI 474 >UniRef50_C7LX45 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LX45_DESBD Length = 529 Score = 271 bits (693), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 175/479 (36%), Positives = 273/479 (56%), Gaps = 23/479 (4%) Query: 187 FRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQ 246 R+L+AI+ + LD++ + + K + + ++ L +L I +++ L Sbjct: 10 LRVLLAISKVIDQALDLESALESILKILSDTMSMRRATVTLYDPLSGRLAISTSYGLSAL 69 Query: 247 HPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGN-----QIQTLC 301 +DE +T +F++ + ++ D++ E + D G + + Sbjct: 70 EKQRGVYRMDEG--ITGIIFRTAKPYVV-----PDIS-LEPLFLDKTGTRRISQERISFV 121 Query: 302 LLPLMSGDTMLGVLKLAQCEEKVFTTT-NLNLLRQIAERVAIAVDNALAYQE-IHRLKER 359 +P++ + +GV+ + ++VFT L+ + VA + L+ E + + + Sbjct: 122 GVPILLHGSPIGVMNV----DRVFTGQEQLDADTEFLTVVATLISQFLSLNEKVKKREAA 177 Query: 360 LVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIA 419 L EN +L Q+ ++ I+G+S+AM V + V VA + +TVL+LGE+GTGK LI Sbjct: 178 LKQENTSLKYQIAR-ENHGPYIVGKSQAMLEVEQYVAKVAITKATVLLLGESGTGKTLIG 236 Query: 420 RAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFL 479 R IH LS R +K+NCAA+P LLE++LFG+E+GAFTGA++ + GRFE A ++FL Sbjct: 237 RIIHELSDRKTHPFIKVNCAAIPENLLEAELFGYEKGAFTGANSTKPGRFEDAHLGTIFL 296 Query: 480 DEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLY 539 DE+G++PL LQ KLLRVLQE+EFER+GSNK + DVR+I+ATNR+L+ +V FR DLY Sbjct: 297 DEIGELPLTLQSKLLRVLQEREFERIGSNKTRKVDVRIISATNRELEALVGHGLFREDLY 356 Query: 540 YRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVR 599 YRLNVFP+H+P +RER EDIP L F ++ R GR++ ++ L L +WPGNVR Sbjct: 357 YRLNVFPVHVPAVRERKEDIPRLLNHFQKEMEREYGRSL-TLTTGALDLLLAYDWPGNVR 415 Query: 600 ELENVIERAVLLTRGNVLQLSLP-DIVLPEPETP-PAATVVALEGEDEYQLIVRVLKET 656 ELEN++ER V+LT ++ L + PE P PA E + + LKET Sbjct: 416 ELENLVERLVILTDDKPVEAELVRGFLTPETHRPGPARHAPEPPAHPEQEDYCQPLKET 474 >UniRef50_B8FGF3 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Bacteria RepID=B8FGF3_DESAA Length = 1047 Score = 271 bits (693), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 158/385 (41%), Positives = 235/385 (61%), Gaps = 8/385 (2%) Query: 303 LPLMSGDTMLGVLKL-AQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLV 361 LP+++ + GV+ L + F +LL+ AE +A V N + E RL++ Sbjct: 663 LPILAPGHLRGVIYLESMYVNDAFDLVPHSLLKLGAEHLARYVHNLV---ECIRLRQEA- 718 Query: 362 DENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARA 421 LA +++ + II RS AM+ +L+Q EM A+S++T+L+ GETGTGKEL+ + Sbjct: 719 -SRLASFKEIRFGQRKDDSIITRSRAMFQILEQAEMAARSEATLLVTGETGTGKELLVKR 777 Query: 422 IHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDE 481 IH+ S R+ MV ++ +P L+ES+LFGHE+GAFTGA ++++G E+A + +LF+DE Sbjct: 778 IHHFSNRSKGPMVTVDSTTIPENLVESELFGHEKGAFTGADSRKLGLIEMAHEGTLFIDE 837 Query: 482 VGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYR 541 +G++P + Q KLLR L+ + F R+G + +++D RL+AATNR L K V FR DLYYR Sbjct: 838 IGELPPQTQVKLLRALESRTFHRVGGAQAVKSDFRLVAATNRSLAKEVEQGRFRQDLYYR 897 Query: 542 LNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVREL 601 LNV + LPPLRER +D+ +LA+ F + G + L+ WPGNVREL Sbjct: 898 LNVIHLVLPPLRERGDDVIVLARHFLDHYCSKYGFKPLNFNRRDEDMLTAYSWPGNVREL 957 Query: 602 ENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVVA 661 +NVIERAV+L+ G L + D V E + E + Y I +VL++T G + Sbjct: 958 KNVIERAVILSGGRRPALDIRDGVQAEGRDFFSGAPTMEEVQRRY--ITKVLEKTKGRID 1015 Query: 662 GPKGAAQRLGLKRTTLLSRMKRLGI 686 GP GAA+ LG+KR+TL SRM +LG+ Sbjct: 1016 GPGGAAEILGMKRSTLYSRMYKLGL 1040 >UniRef50_B5ZJF6 Transcriptional regulator, NifA, Fis Family n=4 Tax=Gluconacetobacter diazotrophicus RepID=B5ZJF6_GLUDA Length = 581 Score = 271 bits (693), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 149/323 (46%), Positives = 207/323 (64%), Gaps = 16/323 (4%) Query: 303 LPLMSGDTMLGVLKL---AQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKER 359 +P++S D ++GV+ L A EE V + ++ LL +A + V +HRL +R Sbjct: 137 VPILSRDRLVGVMLLDRPAIPEESVVGSMDVCLLSMVAGLMGQMV-------RLHRLVQR 189 Query: 360 -----LVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTG 414 L D LA + I+G S A+ +VL++VE+VA+SD TVL+ GE+GTG Sbjct: 190 DRENLLHDSGLAQPAAPVADGGGYMGIVGDSPALRAVLQKVEIVARSDVTVLLRGESGTG 249 Query: 415 KELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADK 474 KEL A+AIH S R+ + VK+NCAA+P +LES+LFGHE+GAFTGA QR GRFELAD Sbjct: 250 KELFAQAIHQASPRHRKPFVKLNCAALPESVLESELFGHEKGAFTGAIGQRKGRFELADG 309 Query: 475 SSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREF 534 +LF+DE+G++ Q KLLRVLQE EFER+G + ++ DVR++ ATNR+L++ V+ F Sbjct: 310 GTLFMDEIGEISPSFQAKLLRVLQEGEFERVGGTRTLKVDVRVVTATNRNLEEAVSKGRF 369 Query: 535 RSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEW 594 R+DLYYRL+V PI LPPLR+RP DIP+LA F + R +I ++ + L+ + Sbjct: 370 RADLYYRLSVIPIFLPPLRDRPTDIPMLANEFLRRF-NETNRTSLTIASDGMDVLTTCYF 428 Query: 595 PGNVRELENVIERAVLLTRGNVL 617 PGNVRELEN I R L G + Sbjct: 429 PGNVRELENCIRRTATLAPGQTI 451 >UniRef50_D2R4F1 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R4F1_9PLAN Length = 533 Score = 271 bits (693), Expect = 7e-71, Method: Compositional matrix adjust. Identities = 172/402 (42%), Positives = 245/402 (60%), Gaps = 21/402 (5%) Query: 303 LPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVD 362 +PL + V+ L + VFT + L +AE +A+AV+N +E+ L+E++ Sbjct: 118 VPLACEHGLFAVMILVSRKGVVFTEGHQQLALALAEPLAVAVENDRRLKELVALREKVEA 177 Query: 363 ENLALTEQLNNVD-SEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARA 421 EN L +L D SE I+G + V+++ +VA++D VL+LGETG+GKE+IARA Sbjct: 178 ENRRLLSKLGRSDLSE--TIVGSESGLREVMERATLVARADVPVLLLGETGSGKEVIARA 235 Query: 422 IHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDE 481 +H S R +++NC A+PA L++S+LFGHE+G+FTGASA R G FE AD +LFLDE Sbjct: 236 VHRGSRRAEGPFLRVNCGAIPAELVDSELFGHEKGSFTGASAIRKGWFERADGGTLFLDE 295 Query: 482 VGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYR 541 G++ Q +LLRVLQ+ FER+G K + DVR+IAAT+R+L+ MV + FR DL+YR Sbjct: 296 CGELTPAAQVRLLRVLQDGTFERVGGEKQLHVDVRVIAATHRNLQGMVREGTFREDLWYR 355 Query: 542 LNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVREL 601 L VFP+HLPPLR+R EDIP +A F + A R G + E + L N WPGN REL Sbjct: 356 LAVFPVHLPPLRDRREDIPAMAIHFAARAAARYGLRPCNPTEEDMHLLLNYSWPGNAREL 415 Query: 602 ENVIERAVLLTRGNVLQL--SLPDI-VLPEPETPPAA--------------TVVALEGED 644 V+ERA +L G+ L + +L ++ LP +PPA TVV L+ E Sbjct: 416 GAVMERAAILGNGHSLDVATALGNVPALPAATSPPAQRAPAAVASSSASRETVVTLD-EA 474 Query: 645 EYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 + I L T+G + G +GAA+ LG+ TL +RM++LGI Sbjct: 475 NRRHIQSALAATDGQIEGHRGAAKILGINPHTLRARMRKLGI 516 >UniRef50_B8FXH0 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8FXH0_DESHD Length = 703 Score = 271 bits (693), Expect = 7e-71, Method: Compositional matrix adjust. Identities = 158/338 (46%), Positives = 213/338 (63%), Gaps = 20/338 (5%) Query: 361 VDENLAL-TEQLNNVDSE---FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKE 416 ++ENLA E+L S F +IIG S M +Q+ ST+LILGE+GTGKE Sbjct: 372 LEENLAYYKEELGKFHSSQFVFDDIIGESPRMKKAKSLAHRASQTTSTILILGESGTGKE 431 Query: 417 LIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGA-SAQRIGRFELADKS 475 + + AIH S R+N +K+NCAA+P LLES+LFG++ GAFTGA + G+FELADK Sbjct: 432 VFSHAIHKSSIRSNGPYIKVNCAALPEDLLESELFGYDEGAFTGARKGGKPGKFELADKG 491 Query: 476 SLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFR 535 ++FLDE+GDM L +Q KLLRVLQE+E ERLG + I+ DVR+IAATNRDL KMV + +FR Sbjct: 492 TIFLDEIGDMSLGMQAKLLRVLQERELERLGGTEPIKVDVRIIAATNRDLHKMVMEHKFR 551 Query: 536 SDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWP 595 DLYYRLNV I LPPLRER EDI +A+ KI +RLG +I + E++ L +WP Sbjct: 552 LDLYYRLNVLTIDLPPLRERKEDIGFIARGLIEKINKRLGTDIQGVRPESITHLCAYDWP 611 Query: 596 GNVRELENVIERAVLLTRGNVL---QLSLPDIVLPEPETPPAATVVALEGEDEYQLIV-- 650 GN+RELEN++ERA+++ + L+LP ++ ET + E EY L Sbjct: 612 GNIRELENILERAIVICDEAWILPKHLALPGVM----ET----ITLGAEQTLEYALQAAE 663 Query: 651 -RVLKETNGVVAGPKGAAQR-LGLKRTTLLSRMKRLGI 686 +L +T V G K A R LG+ R+ L ++ + I Sbjct: 664 REILDKTLRRVQGNKVQAARILGIHRSVLYKKLAKYNI 701 >UniRef50_B8IZX3 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 RepID=B8IZX3_DESDA Length = 522 Score = 271 bits (693), Expect = 7e-71, Method: Compositional matrix adjust. Identities = 159/329 (48%), Positives = 194/329 (58%), Gaps = 33/329 (10%) Query: 381 IIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAA 440 +G SE M V Q+ VA S +TV + GE+GTGKEL ARAIH+ S R + + +NCAA Sbjct: 194 FVGNSEGMQKVYAQIAQVAPSVTTVFLQGESGTGKELAARAIHSGSARAGKPFISLNCAA 253 Query: 441 MPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQ 500 +P L+ES+LFGHERGAFTGASA R GRFELA +LFLDEVG++ L Q KLLRVLQE+ Sbjct: 254 LPENLIESELFGHERGAFTGASATRKGRFELAHGGTLFLDEVGELSLMTQAKLLRVLQER 313 Query: 501 EFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIP 560 FERLG + DVR I ATNR+L+ MVA FR DL+YRLNVFPI+LPPLR RPEDI Sbjct: 314 AFERLGGMETHYVDVRFITATNRNLEHMVAKESFRRDLFYRLNVFPIYLPPLRGRPEDIL 373 Query: 561 LLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLS 620 LA F K A+ GR + + L WPGN+RELENV+ERAVLL L Sbjct: 374 PLANHFIRKFAQANGRENVRLSLSVMDMLQRYAWPGNIRELENVMERAVLL-------LG 426 Query: 621 LPDIVLPEPETPPA---ATVVALEGED-------------------EYQLIVRVLKETNG 658 +VLP+ PPA A + GE E IV L+ + G Sbjct: 427 REGLVLPQ-HLPPALHGAHCAGISGESACAARPGFSGSLQDQLDELERASIVEALEFSQG 485 Query: 659 VVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 + AA LGL + RMK+ I+ Sbjct: 486 QMG---KAAASLGLTERIMALRMKKYEIN 511 >UniRef50_D1CFK1 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Bacteria RepID=D1CFK1_THET1 Length = 466 Score = 271 bits (692), Expect = 9e-71, Method: Compositional matrix adjust. Identities = 138/237 (58%), Positives = 169/237 (71%) Query: 381 IIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAA 440 IIG S M V K + +VA SD+TVLI GETGTGKEL+A IH S + +VK+NCAA Sbjct: 146 IIGNSPVMQEVYKTIGLVAASDATVLITGETGTGKELVAETIHYNSTFSQGPLVKVNCAA 205 Query: 441 MPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQ 500 +P LLES+LFGHE+G+FTGA QR GRFELA K ++FLDE+G+M L Q KLLRVLQE+ Sbjct: 206 LPETLLESELFGHEKGSFTGADRQRKGRFELAHKGTIFLDEIGEMTLGTQRKLLRVLQER 265 Query: 501 EFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIP 560 EFER+G + I+ D R+IAATN+ L++ VA +FR DL+YRLNV IHLPPLRER EDIP Sbjct: 266 EFERVGGSSTIKVDTRVIAATNKKLEEEVAAGKFREDLFYRLNVIHIHLPPLRERKEDIP 325 Query: 561 LLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVL 617 LL F K SI E ++ L +WPGNVRELEN IERAV+L +G V+ Sbjct: 326 LLVDYFLQKHRYHKDGPPASISEEAIKVLMEHDWPGNVRELENTIERAVILAQGGVI 382 >UniRef50_A0LFW8 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Bacteria RepID=A0LFW8_SYNFM Length = 472 Score = 270 bits (691), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 154/370 (41%), Positives = 219/370 (59%), Gaps = 29/370 (7%) Query: 338 ERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEM 397 ER+ VD AL +Q++ + EN L E+L S+F +IG S AM ++ Q++ Sbjct: 109 ERILHVVDQALKWQQLQK-------ENTYLRERLEG-KSQFASLIGSSRAMRTLHNQIDR 160 Query: 398 VAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGA 457 VA++ +TVLI GE+GTGKEL+AR +H S R + + + +NC+ +P ++ES+LFGH RG+ Sbjct: 161 VAKTSATVLITGESGTGKELVARELHKHSLRKDEQFIPLNCSTLPESIIESELFGHLRGS 220 Query: 458 FTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRL 517 FTGA + G E A+ +LFLDE+GD+ + +Q KLLR+LQE E++ +GSN I + D+R Sbjct: 221 FTGALRDKKGLIEEANHGTLFLDEIGDLSMAMQVKLLRLLQEGEYKAIGSNTIRRVDIRF 280 Query: 518 IAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRN 577 IAATN++L + + EFR DL+YRLNV I +PPLRER +DIPLL +F K +N Sbjct: 281 IAATNQNLHEKIRRGEFREDLFYRLNVINIVVPPLRERLDDIPLLVHSFLEKYNVLHHKN 340 Query: 578 IDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATV 637 I + TL L +WPGNVRELEN IER V++ GN L+ D+ LP E P + T Sbjct: 341 IKRVSPVTLNALMQRDWPGNVRELENTIERGVIMASGNTLETE--DVTLPCREAPSSETP 398 Query: 638 VALEG----------------EDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRM 681 + EG E + Q I + L +G V+ AA+ GLKR L M Sbjct: 399 LFSEGDIYSMPFKEAKDKLIEEFQSQYISKALARHSGNVS---QAARESGLKRQYLHRLM 455 Query: 682 KRLGIDKSAL 691 + +D Sbjct: 456 RETNVDSKTF 465 >UniRef50_B9M8I7 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Geobacter sp. FRC-32 RepID=B9M8I7_GEOSF Length = 678 Score = 270 bits (691), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 150/335 (44%), Positives = 210/335 (62%), Gaps = 11/335 (3%) Query: 351 QEIHRLKERLVDENLALTE--QLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLIL 408 Q+I+R+ +L N E ++N G I+ R E + ++ QV V +S+STVLI Sbjct: 348 QQINRINMQL---NYYKNELYKVNGTSYTVGSIVCRDERIATLKSQVLQVGRSNSTVLIT 404 Query: 409 GETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQ-RIG 467 GE+GTGKEL A +IHN S R +K+NC+A+P L E++LFG+E GAFTGA Q + G Sbjct: 405 GESGTGKELFAHSIHNASNRRKEPFIKVNCSAIPGELAEAELFGYEDGAFTGARKQGKPG 464 Query: 468 RFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKK 527 +FELAD ++FLDE+GDMPL LQ KLLRV+Q++E ER+G K + DVR+IAATNRDLK+ Sbjct: 465 KFELADCGTIFLDEIGDMPLALQSKLLRVIQDKEIERVGGVKARKVDVRIIAATNRDLKR 524 Query: 528 MVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLR 587 MV + FR DLY+R+NV + +PPLR+R +DIPLLA F K +LGR ++ I L Sbjct: 525 MVTEGTFREDLYFRINVVELKIPPLRDRRKDIPLLADTFIRKYNNQLGRRVEGITEAALE 584 Query: 588 TLSNMEWPGNVRELENVIERAVLLTRGNVLQLS-LPDIVLPEPETPPAATVVALEGEDEY 646 L+ +WPGN+RELEN+IER + +++L LP+ ++ P A L E Sbjct: 585 ALTRYDWPGNIRELENIIERMLNYRESGLIELQDLPEEIVGRPGGMAAKATQTL-AVMEM 643 Query: 647 QLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRM 681 + I L E G AA+ LG+ R+ L ++ Sbjct: 644 ETIQAALAEAGG---NKSKAARLLGISRSKLYEKL 675 >UniRef50_D2UDB2 Probable flagellar sigma-54 dependent transcriptional activator fleq protein n=1 Tax=Xanthomonas albilineans RepID=D2UDB2_XANAL Length = 495 Score = 270 bits (690), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 160/353 (45%), Positives = 217/353 (61%), Gaps = 51/353 (14%) Query: 383 GRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMP 442 G SEA+ + + ++ VA D+TVL+LGE+GTGKE++ARAIH S R + V +NC A+P Sbjct: 140 GNSEAVTLLRRLIDQVAAFDTTVLVLGESGTGKEVVARAIHQKSPRCDGPFVAINCGAIP 199 Query: 443 AGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEF 502 LLES+LFGHE+G+FTGA + R GRFE+A+ +L LDE+GDM L +Q KLLRVLQE+ F Sbjct: 200 PDLLESELFGHEKGSFTGALSARKGRFEMAEGGTLLLDEIGDMSLPMQVKLLRVLQERSF 259 Query: 503 ERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLL 562 ER+G N I+ +VR+IAAT+R+L++ +AD +FR DL+YRLNVFPI +P LRER +D+P L Sbjct: 260 ERVGGNVTIRCNVRVIAATHRNLEERIADNQFREDLFYRLNVFPIEMPALRERSDDLPAL 319 Query: 563 AKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLS-L 621 ++A R GR E L+ L N EWPGNVREL N++ER +L G+++++ L Sbjct: 320 VHTIAAQLA-RTGRGEVRFSEEALQALCNYEWPGNVRELTNLVERLAVLHPGSLVRVQDL 378 Query: 622 P-----------DIVLP-------EPETPP----------------AATVVAL----EGE 643 P D+ P EP P AT VA G Sbjct: 379 PARYRGDFASSIDVSAPPSPVTTTEPRRLPNVVDLRTGGKLHGEYSQATQVAATLPESGL 438 Query: 644 D--------EYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDK 688 D E LI L+ T GVVA AAQ LGL+RTTL+ ++++ GID+ Sbjct: 439 DLRGHMANIELALINEALERTQGVVA---HAAQLLGLRRTTLVEKLRKYGIDR 488 >UniRef50_C4FI59 AAA family ATPase n=1 Tax=Sulfurihydrogenibium yellowstonense SS-5 RepID=C4FI59_9AQUI Length = 531 Score = 270 bits (690), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 143/308 (46%), Positives = 204/308 (66%), Gaps = 8/308 (2%) Query: 381 IIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAA 440 +I +S M VL + VA + + VL+ GE+GTGK ++A+ IHN S R ++ VK+NCAA Sbjct: 229 LITKSSLMVYVLDIAKTVADTTANVLLEGESGTGKNVLAKYIHNQSSRRDKPFVKINCAA 288 Query: 441 MPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQ 500 +P LLES+LFG+ +GAFTGA + G+ ELAD +LFLDE+G++P LQ KLL ++QE+ Sbjct: 289 IPDNLLESELFGYVKGAFTGAVKDKPGKVELADGGTLFLDEIGELPTYLQSKLLHLIQEK 348 Query: 501 EFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIP 560 EFERLG K + DVR+IAATN+DL ++V + +FR DLYYRL V I +P LRER EDIP Sbjct: 349 EFERLGDTKTKKVDVRIIAATNKDLSQLVKEGKFREDLYYRLKVISIKVPALRERKEDIP 408 Query: 561 LLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLS 620 L F +++ ++I I E +R L N ++PGN+RELEN+IERAV+L +G +++S Sbjct: 409 FLINYFIDLYSKQYNKHIKGISPEAVRLLLNYDYPGNIRELENIIERAVILAKGKFIEVS 468 Query: 621 -LPDIVLPEPETPPAATVVALEGE-DEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLL 678 LPD ++ + T L+ E DE Q I+RVL+ N AA+ L + R TL Sbjct: 469 DLPDEIVYNTKI---LTQNDLDEEIDEKQKILRVLESVNW---NKSKAAKILNIDRVTLW 522 Query: 679 SRMKRLGI 686 ++K+ G+ Sbjct: 523 RKLKKYGL 530 >UniRef50_Q2LUG8 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=6 Tax=Bacteria RepID=Q2LUG8_SYNAS Length = 456 Score = 270 bits (690), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 153/340 (45%), Positives = 213/340 (62%), Gaps = 10/340 (2%) Query: 355 RLKER--LVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETG 412 R+ ER L+ EN L QL + II S+ M ++ VA S +TVL+ GE+G Sbjct: 117 RVAERRTLIRENEILRRQLKDQGVTTDAIIFTSQKMAALTSMAARVASSRATVLLQGESG 176 Query: 413 TGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELA 472 TGKEL+AR IH LS R+ R ++ +NC A+P L+ES+LFGHE+GAFTGA+++RIGRFE A Sbjct: 177 TGKELLARLIHQLSPRSTRPIITVNCGALPESLIESELFGHEKGAFTGATSRRIGRFEEA 236 Query: 473 DKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADR 532 D +LFLDE+G++ + +Q KLLR LQE+EF+R+G N I+ DVR+I+ATNRDL+ MV + Sbjct: 237 DGGTLFLDEIGELTMPVQVKLLRFLQEREFQRVGGNTNIRADVRIISATNRDLETMVKEE 296 Query: 533 EFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNM 592 +FR DLYYRLNV + +PPLRER EDIP L F + A G+ I I +E L Sbjct: 297 KFREDLYYRLNVVVMSIPPLRERREDIPALIDHFLERFAAENGKKISGISSEARDLLMKY 356 Query: 593 EWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGEDEYQLIVRV 652 ++PGNVRELEN+IERAV++ R ++ + D+ E + V EGE + + Sbjct: 357 DYPGNVRELENIIERAVVIARNEIIYME--DLPFREDTLVATSGGVPEEGEGRLRGAIEN 414 Query: 653 LKETNGVVAGPKG------AAQRLGLKRTTLLSRMKRLGI 686 L++ A K AA+ LGL L ++K+ G+ Sbjct: 415 LEKQMIQDAMEKAGDHQTRAAEMLGLSERMLRYKLKKYGL 454 >UniRef50_A8ZZQ7 Sigma-54 factor interaction domain-containing protein n=4 Tax=Proteobacteria RepID=A8ZZQ7_DESOH Length = 684 Score = 270 bits (689), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 156/406 (38%), Positives = 241/406 (59%), Gaps = 11/406 (2%) Query: 287 RMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDN 346 ++ +G++I + + PL+ + +G + +T ++ L + + +A+ N Sbjct: 277 KLYMPIFGSEICCISM-PLIHKERPIGAAVVGLEGRARYTEEHMQLFALLHDPFVLALSN 335 Query: 347 ALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVL 406 + ++E+ RLK + +E L E+L+ + IIG S + V++ +VA DS VL Sbjct: 336 NIRHREVIRLKNLVEEEKKDLAEELHCTAPD--TIIGGSLGLEKVMENARLVAGQDSPVL 393 Query: 407 ILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRI 466 + GETG GKE+IA IH S R + ++K+NC A+P L++S+LFGHE+GAFTGA+ Q++ Sbjct: 394 LTGETGVGKEMIANFIHWQSSRKDGPLIKVNCGAIPDTLVDSELFGHEKGAFTGATRQKL 453 Query: 467 GRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLK 526 GRFE A+ ++FLDE+ ++PL Q ++LRVL + ER+G + I D+R+IAAT+R+L+ Sbjct: 454 GRFERANGGTIFLDEIAELPLPAQVRMLRVLHNKIIERVGGTESIPVDIRIIAATHRNLE 513 Query: 527 KMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIP---A 583 + V FR DL++RLNVFPI +PPLR R D+P L+ F K +R L I P Sbjct: 514 ERVKAGRFREDLWFRLNVFPIRIPPLRSRTMDVPALSDHFIEKKSREL--KIHPTPPLSP 571 Query: 584 ETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLS--LPDIVLPEPETPPAATVVALE 641 + + L+ WPGNVRELENVIER ++L G L P EP T L Sbjct: 572 DAMARLTAYSWPGNVRELENVIERELILNTGGPLTFQNLSPTPTHEEPAGHDMKTEDILS 631 Query: 642 GEDEY-QLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 +D + + + +VL +NG + GP GAA+ + +K TL +RMK+LGI Sbjct: 632 LDDLFVRHVKKVLVLSNGKINGPGGAAEMMKIKPNTLRNRMKKLGI 677 >UniRef50_B8DQY9 Transcriptional regulator, NifA subfamily, Fis Family n=8 Tax=Desulfovibrio RepID=B8DQY9_DESVM Length = 579 Score = 269 bits (688), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 172/435 (39%), Positives = 251/435 (57%), Gaps = 24/435 (5%) Query: 186 NFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDK 245 + L AI+ LD+++ + EV + + + +I L +L I ++H L Sbjct: 9 KLKALYAISQVFDRALDLEQALGEVLRVLSETLSMKRATITLPDRETGQLVIAASHGLTP 68 Query: 246 QHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQ----TLC 301 + +DE T T +F++ ++ D L L T +++ + Sbjct: 69 EERGRGVYRLDEGVTGT--IFQTARPYIVRDVRTDPL-----FLDRTGARKVEKGKISFL 121 Query: 302 LLPLMSGDTMLGVLKLAQC-EEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKER- 359 +P++ +GVL + + + V T+ ++ L +A VA L+ E +L ER Sbjct: 122 GVPILKQGAPIGVLNVDRLFSDDVSTSEDVEFLGIVATLVA----QFLSLNE--QLNERV 175 Query: 360 --LVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKEL 417 L EN+ L ++ +D I+GRS AM V +Q+E VA + +TVL+LGE+G GK L Sbjct: 176 DTLRRENVKLRTRV--LDERGDYIVGRSAAMLDVQRQIERVAPTRATVLLLGESGVGKTL 233 Query: 418 IARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSL 477 IAR +HNLS R VK+NCA++P LLE++LFGHE+GAFTGA+A R GRFE A + ++ Sbjct: 234 IARLLHNLSDRMVHPFVKVNCASIPETLLEAELFGHEKGAFTGAAAVRAGRFEEAHRGTI 293 Query: 478 FLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSD 537 FLDE+G++P +Q KLLRV+Q++EFERLGSN+ + DVR++AATNRDL + FR D Sbjct: 294 FLDEIGELPPGIQAKLLRVIQDREFERLGSNQTHRVDVRIVAATNRDLALLSEQGRFRQD 353 Query: 538 LYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGN 597 LYYRL VFPI +P LRERP+D+ L F K AR R I P + L L EWPGN Sbjct: 354 LYYRLCVFPIRVPSLRERPDDVERLLNHFLAKAARDYRRVITLAP-DALGLLRRHEWPGN 412 Query: 598 VRELENVIERAVLLT 612 VRE+EN+IER +L+ Sbjct: 413 VREMENLIERLAILS 427 >UniRef50_Q9APD9 Transcriptional regulatory protein zraR n=89 Tax=Proteobacteria RepID=ZRAR_KLEOX Length = 443 Score = 269 bits (688), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 156/349 (44%), Positives = 218/349 (62%), Gaps = 19/349 (5%) Query: 338 ERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEM 397 +++ + + ALA+ RL E V E A ++FG ++G S AM ++L + + Sbjct: 111 DKLQLTLSEALAHT---RLSESPVTETPA---------AQFG-MVGDSPAMRALLNNITL 157 Query: 398 VAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGA 457 VA SD+TVLI GE+GTGKEL+ARA+H S R+ R +V +NCAA+ LLES+LFGHE+GA Sbjct: 158 VAPSDATVLIHGESGTGKELVARALHASSARSRRPLVILNCAALNESLLESELFGHEKGA 217 Query: 458 FTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRL 517 FTGA +R GRF AD +LFLDE+GD+ +Q +LLR +QE+E +R+GSN+ + DVRL Sbjct: 218 FTGADKRREGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTLSVDVRL 277 Query: 518 IAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRN 577 IAAT+RDL + V+ FR DLYYRLNV I +PPLR R EDIP LA+ F + A R + Sbjct: 278 IAATHRDLAEEVSAGRFRQDLYYRLNVVTIDMPPLRHRREDIPPLARYFLQRYAERNRKA 337 Query: 578 IDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVL---QLSLPDIVLPEPETPPA 634 + + + L + WPGN+RELEN +ERAV+L G + +L L P + P Sbjct: 338 VQGFTPQAMDLLIHYAWPGNIRELENAVERAVVLLTGEYISERELPLAITGTPVADAPHG 397 Query: 635 ATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKR 683 + E E + I+ L+ T G AA+RLG+ R TLL+++ R Sbjct: 398 DDSIQPLVEVEKEAILAALERTGG---NKTEAARRLGITRKTLLAKLSR 443 >UniRef50_D2TTF4 Two-component system response regulator n=3 Tax=Proteobacteria RepID=D2TTF4_CITRO Length = 441 Score = 269 bits (688), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 155/350 (44%), Positives = 226/350 (64%), Gaps = 17/350 (4%) Query: 343 AVDNALAYQEIHRLKERLVDENLA----LTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMV 398 A+D + + RL+E L +++LA + +L +V + ++G+S AM +L ++ MV Sbjct: 100 ALDYLIKPLDFDRLQETL-EKSLAHAQEVAGELPSVSASQSGMVGKSPAMQQLLSEIAMV 158 Query: 399 AQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAF 458 A SD+TVLI G++GTGKEL+ARA+H S R+++ +V +NCAA+ LLES+LFGHE+GAF Sbjct: 159 APSDATVLIHGDSGTGKELVARALHASSARSDKPLVTLNCAALNESLLESELFGHEKGAF 218 Query: 459 TGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLI 518 TGA +R GRF AD +LFLDE+GD+ +Q +LLR +QE+E +R+GSN+ + DVRLI Sbjct: 219 TGADKRREGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTLSVDVRLI 278 Query: 519 AATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNI 578 AAT+RDL + + FR DLYYRLNV I P LR+R EDIPLLA+ F + A R + + Sbjct: 279 AATHRDLAQEASAGRFRQDLYYRLNVVTIETPSLRQRREDIPLLAEHFLQRFAARNRKAV 338 Query: 579 DSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNV-----LQLSLPDIVLPEPETPP 633 + + L + WPGN+RELEN IERAV+L G L L++ + +P P Sbjct: 339 KGFTPQAMDLLIHYAWPGNIRELENAIERAVVLLTGEYISERELPLAIANQAMP---LMP 395 Query: 634 AATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKR 683 A + L E E ++I+ L++T G AA++LG+ R TLL+++ R Sbjct: 396 AQAIQPLV-EVEKEVILAALEKTGG---NKTEAARQLGITRKTLLAKLSR 441 >UniRef50_A4VMJ3 Transcriptional regulator FleQ n=69 Tax=Gammaproteobacteria RepID=A4VMJ3_PSEU5 Length = 504 Score = 269 bits (688), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 153/344 (44%), Positives = 213/344 (61%), Gaps = 37/344 (10%) Query: 378 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMN 437 F ++G S A+ V + +E VA ++++VLILGE+GTGKE++AR +H S R V +N Sbjct: 158 FRSLVGTSRAVQHVRQMMEQVADTEASVLILGESGTGKEVVARNLHYHSKRRQGPFVPVN 217 Query: 438 CAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVL 497 C A+PA LLES+LFGHE+GAFTGA R GRFELA+ +LFLDE+GDMPL +Q KLLRVL Sbjct: 218 CGAIPAELLESELFGHEKGAFTGAITARAGRFELAEGGTLFLDEIGDMPLPMQVKLLRVL 277 Query: 498 QEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPE 557 QE+ FER+GSN+ DVR+IAAT++DL+KM+ + FR DLYYRLNVFPI + PLRER E Sbjct: 278 QERTFERVGSNRTQNADVRIIAATHKDLEKMIEEGTFREDLYYRLNVFPIEMAPLRERVE 337 Query: 558 DIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIER-AVLLTRGNV 616 DIPLL ++ R + + +L +WPGNVREL N++ER A++ G + Sbjct: 338 DIPLLMNELISRMEHE-KRGSIRFNSAAIMSLCRHDWPGNVRELANLVERMAIMHPYGVI 396 Query: 617 LQLSLPD-----------------------IVLPEPE-TPPAATVVALEGED-------- 644 + LP + P P A ++ +EG D Sbjct: 397 GVMELPKKFRHVDDDDEQYATSLHDEMEERAAISAPMVVPEAQAMLPVEGLDLKEYLGNL 456 Query: 645 EYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDK 688 E LI + L++ GVVA AA+RL ++RTTL+ +M++ G+++ Sbjct: 457 EQGLIHQALEDAGGVVA---RAAERLRIRRTTLVEKMRKYGMNR 497 >UniRef50_B1ZR63 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZR63_OPITP Length = 490 Score = 269 bits (688), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 144/314 (45%), Positives = 197/314 (62%), Gaps = 25/314 (7%) Query: 339 RVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMV 398 ++ + + A Y+++ R+ L D+ + E G ++GRS AM + + +E V Sbjct: 110 QIDVILKKAQTYRQLLRVNRLLSDDP----------EDEEGILVGRSPAMIRLRQIIERV 159 Query: 399 AQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAF 458 A +D+TVLI GE+GTGKE++AR + S R ++ +K+NCAA+ L+ES+ FGHERGAF Sbjct: 160 APTDATVLITGESGTGKEMVAREFYRRSPRRSQAFIKVNCAAISENLIESEFFGHERGAF 219 Query: 459 TGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLI 518 TGA+ +R GRFELA + +L LDEV ++P LQ KLLRVLQE+EFER+G ++ I+ +VR+I Sbjct: 220 TGATERREGRFELAHQGTLLLDEVSEIPANLQAKLLRVLQEREFERVGGSRTIKVNVRII 279 Query: 519 AATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNI 578 A +NRDL + V EFR DLYYRLNVFP+H+P LRERPEDI LLA F + AR+ G + Sbjct: 280 ATSNRDLMRHVEKGEFRQDLYYRLNVFPVHVPALRERPEDIALLADHFLRRFARKHGVKV 339 Query: 579 DSIPAETLRTLSNMEWPGNVRELENVIERAVLLTR-------------GNVLQLSLPDIV 625 L WPGNVREL+N +ERAV+L+ G+ L LP Sbjct: 340 TGFADSARAALIGYRWPGNVRELQNTVERAVILSETGRAVTAAALGLPGDFLPGELPLEP 399 Query: 626 LPEPETP--PAATV 637 P PE P P A V Sbjct: 400 APAPEVPALPVAAV 413 >UniRef50_Q8Z333 Transcriptional regulatory protein zraR n=36 Tax=Proteobacteria RepID=ZRAR_SALTI Length = 441 Score = 269 bits (688), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 151/315 (47%), Positives = 204/315 (64%), Gaps = 17/315 (5%) Query: 376 SEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVK 435 ++FG +IG S AM +L ++ MVA SD+TVLI G++GTGKEL+ARA+H S R+++ +V Sbjct: 137 AQFG-MIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSARSDKPLVT 195 Query: 436 MNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLR 495 +NCAA+ LLES+LFGHE+GAFTGA +R GRF AD +LFLDE+GD+ +Q +LLR Sbjct: 196 LNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPLMQVRLLR 255 Query: 496 VLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRER 555 +QE+E +R+GSN+ I DV LIAAT+RDL + V+ FR DLYYRLNV I +P LR+R Sbjct: 256 AIQEREVQRVGSNQTISVDVWLIAATHRDLAEEVSAGRFRQDLYYRLNVVAIEMPSLRQR 315 Query: 556 PEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGN 615 EDIPLLA F + A R + + + + L + +WPGN+RELEN IERAV+L G Sbjct: 316 REDIPLLADHFLRRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAIERAVVLLTGE 375 Query: 616 VLQLSLPDIVLPEPETP--PAATVVALEGEDEYQLIVRVLKETNGVVAGPKG-----AAQ 668 + E E P AAT + E E Q +V V KE G AA+ Sbjct: 376 YIS---------ERELPLAIAATPIKAENSAEIQPLVDVEKEVILAALEKTGGNKTEAAR 426 Query: 669 RLGLKRTTLLSRMKR 683 +LG+ R TLL+++ R Sbjct: 427 QLGITRKTLLAKLSR 441 >UniRef50_Q7UE04 Cetoacetate metabolism regulatory protein atoC n=1 Tax=Rhodopirellula baltica RepID=Q7UE04_RHOBA Length = 481 Score = 269 bits (688), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 150/329 (45%), Positives = 204/329 (62%), Gaps = 28/329 (8%) Query: 381 IIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAA 440 I+G AM V + + VA D+ VLILGETGTGKE++ARAI+ S R+++ +NCAA Sbjct: 151 ILGSCPAMVDVFRSIGRVASRDAAVLILGETGTGKEVVARAIYQHSQRHDQVFHAINCAA 210 Query: 441 MPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQ 500 +P LLES+LFGHERG+FTGA +RIG+FE+ + +LFLDE+GDM +Q KLLRVLQE+ Sbjct: 211 IPEALLESELFGHERGSFTGADQRRIGKFEICNGGTLFLDEIGDMTPVMQTKLLRVLQEK 270 Query: 501 EFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIP 560 EFER+G +K I+TDVR++AATNRDL+ +AD FRSDL+YRLN F I LPPLRER ED+ Sbjct: 271 EFERVGGSKPIKTDVRILAATNRDLESAMADGSFRSDLFYRLNEFTIELPPLRERGEDVA 330 Query: 561 LLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLS 620 +A+ F A +LG++ SI ET++ L WPGNVREL+ ++++ +L G V+ + Sbjct: 331 RMAEHFFSLFADQLGKDFVSIAPETMQRLMAHSWPGNVRELQGIVKQTLLKASGPVIVPA 390 Query: 621 LPDIVLPEPETPPAATVVALEGEDEYQ-------------------------LIVRVLKE 655 E +P ++ E E LI V+K Sbjct: 391 FLPSGFGESSSPGNNVEISNGWESEVSKEINRRLASGSCTVSEDIHNEVDRILIREVMKA 450 Query: 656 TNGVVAGPKGAAQRLGLKRTTLLSRMKRL 684 T ++ A+ RLG+ R TL SRMK L Sbjct: 451 TGNNLS---EASLRLGISRPTLRSRMKHL 476 >UniRef50_Q1PV55 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PV55_9BACT Length = 448 Score = 269 bits (687), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 143/314 (45%), Positives = 208/314 (66%), Gaps = 10/314 (3%) Query: 378 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMN 437 FG IIG S + + + V+ +++ +LI GETGTGKEL+A+AIH S RNN R VK++ Sbjct: 140 FGNIIGESPKIKKIYDIISHVSGTEANILIQGETGTGKELVAKAIHYNSARNNHRFVKVD 199 Query: 438 CAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVL 497 C+++ LLES+LFGHE+GAFTGA+ R+GRF AD ++FLDE+G++ L +Q KLLRVL Sbjct: 200 CSSLTETLLESELFGHEKGAFTGATKDRVGRFRKADHGTIFLDEIGNISLAVQAKLLRVL 259 Query: 498 QEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPE 557 Q+ EFE +GS++ I+ DVR+IAATN DL+ V FRSDL+YRLNV I LPPLRER E Sbjct: 260 QDSEFEAVGSDESIKVDVRIIAATNADLEGCVEKGLFRSDLFYRLNVIRIFLPPLRERTE 319 Query: 558 DIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVL 617 DIPLLA F ++ + ++ +TL L++ WPGN+RELENVIERAV+L + N Sbjct: 320 DIPLLAAHFLAIHNKKNRKTVEGFSRDTLNILTSYAWPGNIRELENVIERAVILCKKN-- 377 Query: 618 QLSLPDIVLPEPE--TPPAATVVALE---GEDEYQLIVRVLKETNGVVAGPKGAAQRLGL 672 +++ D+ L + + T P + L+ + E Q+I+ L+ + A + A+ L + Sbjct: 378 RITPEDVPLYQEKMGTRPGLSGKPLQELLEQTERQIIINTLEAND---ADKEKTAKILKI 434 Query: 673 KRTTLLSRMKRLGI 686 R +L +++ + I Sbjct: 435 SRASLYNKLNKYKI 448 >UniRef50_B4U9N2 Transcriptional regulator, NifA subfamily, Fis Family n=5 Tax=Aquificaceae RepID=B4U9N2_HYDS0 Length = 502 Score = 268 bits (686), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 158/442 (35%), Positives = 255/442 (57%), Gaps = 22/442 (4%) Query: 183 ERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHY 242 E + +L +++ A LS+ D D+ + ++ K + ++ ++ I + I Sbjct: 8 ENIDVSLLTSVSKA-LSQKDFDKALRDILKIFYSFWGVEYSYIAFYDKSTKTIKIREAFG 66 Query: 243 LDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCL 302 ++ + ++ + + +FK+ ++I + D + + D N+ Sbjct: 67 FNQ---SVKKILFESGKGIVGNIFKNSIPVVIKDPKHDKAFLNKTKILDKIKNE--AFIG 121 Query: 303 LPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVD 362 +P+ S D +GV L + +LN ++ V I + + ++L L + Sbjct: 122 VPIRSEDRTIGVFCLFK---------DLNKHEELTRIVDIMLVVSAMIGMSYKLFGILQE 172 Query: 363 ENLALTEQLNNVDSEFGE------IIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKE 416 E + EQ + EF + +G+SEA+ ++ ++ +A +DSTVL+LGE+G GK Sbjct: 173 EKASWEEQRQLLAKEFSDTFSIEGFVGKSEAIITLKDTIQKIAMTDSTVLLLGESGVGKT 232 Query: 417 LIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSS 476 LIA+AIH LS R ++ + +NCAA+P LLE++LFG+E+GAFTGA + G+FELA+ + Sbjct: 233 LIAKAIHTLSERKDKPFISVNCAAIPETLLEAELFGYEKGAFTGAVHSKKGKFELANGGT 292 Query: 477 LFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRS 536 +FLDE+G++PL+ Q KLLRV+QE+E E+LG+ K I +VR+IA+TN+DL MVA EFR Sbjct: 293 IFLDEIGELPLQSQSKLLRVIQEKELEKLGAEKSIFVNVRVIASTNKDLASMVARGEFRE 352 Query: 537 DLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPG 596 DLYYRLNV PI +P LRER EDIPLL K F K + ++I+ I E + L N WPG Sbjct: 353 DLYYRLNVIPIRVPALRERKEDIPLLVKHFLDKFNKHYKKHIN-IEKEAMEALVNYNWPG 411 Query: 597 NVRELENVIERAVLLTRGNVLQ 618 N+RELEN+IER V++ ++ + Sbjct: 412 NIRELENLIERLVVINNKDITK 433 >UniRef50_UPI00016C44AF cetoacetate metabolism regulatory protein atoC n=5 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C44AF Length = 490 Score = 268 bits (686), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 147/333 (44%), Positives = 206/333 (61%), Gaps = 23/333 (6%) Query: 372 NNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNR 431 ++ D+E +I+G+ AM V K + +A D VLILGE+GTGKEL+ARA++ S R+++ Sbjct: 137 DSADTE--QIVGQCPAMLDVYKAIGRIAPQDVPVLILGESGTGKELVARALYLHSPRSDK 194 Query: 432 RMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQP 491 V +NCAA+P LLES+LFGHE+GAFTGA +R+G+FE A ++FLDE+GDMP Q Sbjct: 195 PFVAINCAAIPDALLESELFGHEKGAFTGADRRRVGKFEQAQGGTVFLDEIGDMPPAAQA 254 Query: 492 KLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPP 551 K+LR+LQ+Q FER+G N+ +QTDVR+IAATNRDL +V D +FR DL YRLN F + LPP Sbjct: 255 KMLRLLQDQRFERVGGNESVQTDVRVIAATNRDLSALVRDSKFREDLLYRLNSFTVTLPP 314 Query: 552 LRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLL 611 LR+R DI L F R+L +N+ + A L L + WPGNVREL+N + AV+ Sbjct: 315 LRDRTGDIEPLVSHFVTAANRKLKKNVRGVDAAALAVLESHRWPGNVRELQNAMRYAVVQ 374 Query: 612 TRGNVLQLSLPDIVLPEPETPPA---------ATVVALEGEDEYQ---------LIVRVL 653 G V+ L PP +++ + D Y+ L+ VL Sbjct: 375 AVGEVITPDCLPASLRGAAAPPGDALELTALITSLLRVGATDIYRQVTHTVDRALLTAVL 434 Query: 654 KETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 + +G K AA RLG+ RTTL ++++ LG+ Sbjct: 435 EHVHG---NQKQAADRLGISRTTLRAKLQTLGL 464 >UniRef50_Q6ALT7 Related to two-component system response regulator (Ntr family) n=1 Tax=Desulfotalea psychrophila RepID=Q6ALT7_DESPS Length = 453 Score = 268 bits (686), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 146/316 (46%), Positives = 208/316 (65%), Gaps = 10/316 (3%) Query: 378 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMN 437 F +IGR+ M V ++V VA +++TVLI GETGTGKEL+A AIH+ S R + ++++N Sbjct: 138 FENLIGRNIKMLDVYQKVNDVAVANTTVLITGETGTGKELVAEAIHSRSARKSGPLIRVN 197 Query: 438 CAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVL 497 CAA L+ S+LFG+E+GAF+GA A + G FELAD ++ LDE+GD+PL+ Q LLR+L Sbjct: 198 CAAFTETLINSELFGYEKGAFSGAMALKKGCFELADNGTILLDEIGDIPLQTQTCLLRLL 257 Query: 498 QEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPE 557 F+R+G K ++T+ R+I ATN DL MV ++ FR DL+YR+NV IH+PPLRER Sbjct: 258 DSGSFQRVGGVKTLKTNSRIICATNLDLWHMVQEKLFREDLFYRINVVSIHMPPLRERKS 317 Query: 558 DIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVL 617 DIPLLA+ F K ++G++I IP T+ L +WPGNVREL NVIE+AV+ + Sbjct: 318 DIPLLARYFLKKYCGQIGKDISHIPDSTMEMLHRYDWPGNVRELANVIEQAVVFCKRK-- 375 Query: 618 QLSLPDIVLPEPETP-PAATVVALEG----EDEYQLIVRVLKETNGVVAGPKGAAQRLGL 672 +L+L ++ L ET P A ++ L + LI VL ET + K AA++L + Sbjct: 376 ELALHNLPLKVRETSLPKAFILNLASRSLPDAASALIQNVLAETGWNM---KQAAEKLDI 432 Query: 673 KRTTLLSRMKRLGIDK 688 R TL S++K+ GI+K Sbjct: 433 ARGTLYSKIKKYGIEK 448 >UniRef50_C1PBV8 Putative sigma54 specific transcriptional regulator n=1 Tax=Bacillus coagulans 36D1 RepID=C1PBV8_BACCO Length = 553 Score = 268 bits (685), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 139/314 (44%), Positives = 208/314 (66%), Gaps = 9/314 (2%) Query: 378 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMN 437 F +I+G SE + ++ + V++SD T+++ GE+GTGKE+ A+AIH+ S R N+ V +N Sbjct: 240 FEDILGVSEILKQTIQSAKRVSKSDVTIMLRGESGTGKEMFAQAIHHESERKNQPFVALN 299 Query: 438 CAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVL 497 CAA+P LLES+LFG+E+GAFTGA ++ GRFELA+ +LFLDE+GDM L LQ K+LRVL Sbjct: 300 CAAIPENLLESELFGYEKGAFTGAEKEKPGRFELANHGTLFLDEIGDMSLYLQAKILRVL 359 Query: 498 QEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPE 557 QE+ ER+GSNK + DVR+I AT+R+L++++ EFR DLYYR++V PI++PPLR R E Sbjct: 360 QEKTLERIGSNKSRKIDVRIITATHRNLEELIRKGEFREDLYYRISVIPIYIPPLRARKE 419 Query: 558 DIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVL 617 D+P+L + F K ++ L R+ ++ AETL L +WPGN+REL+NV+ V L G+ + Sbjct: 420 DLPILIEHFIQKFSKDLNRDSKNLAAETLDRLMQYDWPGNIRELQNVVRHFVELQIGDTV 479 Query: 618 QL-SLPDIVLPEPETPPAATVVALEGEDEYQL------IVRVLKETNGVVAGPKGAAQRL 670 L SLP + ++ P + V + + YQ ++ +L+ G K A L Sbjct: 480 TLESLPSSLQRGAKSFPPS--VKPKRTNHYQTRLEKRKVLELLERNGWSTEGKKKTAADL 537 Query: 671 GLKRTTLLSRMKRL 684 G+ TL +K++ Sbjct: 538 GISLATLYRYLKKI 551 >UniRef50_Q1NW39 Nif-specific regulatory protein n=2 Tax=Deltaproteobacteria RepID=Q1NW39_9DELT Length = 541 Score = 268 bits (685), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 164/432 (37%), Positives = 247/432 (57%), Gaps = 10/432 (2%) Query: 190 LVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQHPA 249 L I+ + S LD+ + ++E +H ++ ++VL +L I +++ L A Sbjct: 18 LYQISQLIGSALDISKTLNETLGVLHETLRMERATLVLEECDSGRLTIVASYGLSPAEIA 77 Query: 250 HEQSEVDEAGTLTERVFKSKEMLLI-NLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSG 308 +E + R+F S ++ ++H R + +I + +P+M Sbjct: 78 RGIYRPEEG--VIGRIFASAYPFVVPDVHREPLFLNRTRARTNLPKGEI-SFIGVPVMLA 134 Query: 309 DTMLGVLKLAQC-EEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLAL 367 + +GVL + + ++ ++ L +A + ++ + ++ L +EN L Sbjct: 135 ENPVGVLSVDRLFGPEISFEEDIRFLTVVATMIGQFLNLQRTFASSQQV---LREENSQL 191 Query: 368 TEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSG 427 +L + + + IIG+ + + V + VA S +T L+LGE+GTGKEL+ARAIH Sbjct: 192 RRKLQDRFNRY-NIIGQCKRIQEVYDYIAKVAPSRATALLLGESGTGKELVARAIHQAGP 250 Query: 428 RNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPL 487 R +K+NCAA+P LLES+L GHE+GAFTGA Q+ GRFELAD +LFLDE+G++PL Sbjct: 251 RAGEPFIKLNCAALPENLLESELLGHEKGAFTGAVGQKKGRFELADGGTLFLDEIGELPL 310 Query: 488 ELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPI 547 LQ KLLRVLQE+ FERLG ++ I DVR+IAATNR L+ V + FR+DLYYRLNV P+ Sbjct: 311 ALQAKLLRVLQERTFERLGGSRTIAVDVRIIAATNRSLEAGVEEGVFRADLYYRLNVVPV 370 Query: 548 HLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIER 607 LPPLRER EDIPLL F + + R R A +R L+ WPGNVREL+N++ER Sbjct: 371 VLPPLRERREDIPLLLDHF-LRESNRHNRRRVKFAAAVIRRLNEYSWPGNVRELQNLVER 429 Query: 608 AVLLTRGNVLQL 619 V++ G V+ L Sbjct: 430 LVIMVDGEVVNL 441 >UniRef50_Q53206 Nif-specific regulatory protein n=5 Tax=Alphaproteobacteria RepID=NIFA_RHISN Length = 594 Score = 268 bits (685), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 133/233 (57%), Positives = 170/233 (72%), Gaps = 1/233 (0%) Query: 381 IIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAA 440 I+G S A+ V++ V++VAQ++S VL+ GE+GTGKE A+AIH LS R + VK+NCAA Sbjct: 252 IVGESPALRQVVESVKVVAQTNSAVLLRGESGTGKEFFAKAIHELSPRRKKPFVKLNCAA 311 Query: 441 MPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQ 500 + AG+LES+LFGHE+GAFTGA +QR GRFELAD +L LDE+G++ Q KLLRVLQE Sbjct: 312 LSAGVLESELFGHEKGAFTGAISQRAGRFELADGGTLLLDEIGEISPAFQAKLLRVLQEG 371 Query: 501 EFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIP 560 E ER+G K ++ DVRLI ATN+DL+ VA+ EFR+DLYYR+NV P+ LPPLRER DIP Sbjct: 372 ELERVGGTKTLKVDVRLICATNKDLETAVAEGEFRADLYYRINVVPLFLPPLRERNGDIP 431 Query: 561 LLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTR 613 LAK F + R RN++ PA L LS ++PGNVRELEN + R L R Sbjct: 432 RLAKVFLDRFNRENNRNLEFTPA-ALEILSRCKFPGNVRELENCVRRTATLAR 483 >UniRef50_A9DEH7 PAS domain:sigma-54-dependent transcriptional regulator, Fis family protein n=3 Tax=Alphaproteobacteria RepID=A9DEH7_9RHIZ Length = 623 Score = 268 bits (685), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 151/343 (44%), Positives = 212/343 (61%), Gaps = 10/343 (2%) Query: 349 AYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLIL 408 A ++I L+ERL EN L E++ V S + +++G S A+ L Q+ +VA ++S VLI Sbjct: 277 AMEQIEALRERLEQENEYLQEEIQQVRSHY-DLVGGSPAIQRTLAQINLVAATESNVLIT 335 Query: 409 GETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGR 468 GE GTGK L+A A H S R R ++++NCA + ES+LFGH RGAF GA R G+ Sbjct: 336 GEGGTGKALVASATHKASSRAKRPIIRVNCAGISPASFESELFGHVRGAFAGALHDRTGK 395 Query: 469 FELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKM 528 E+A+ +LFLDEV ++PL+LQ +L+VL+++ FERLG ++ + +VR+IAA+ +DL+ Sbjct: 396 IEIANGGTLFLDEVSEIPLDLQGTILKVLRDKTFERLGESRTNKINVRVIAASTKDLELC 455 Query: 529 VADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRT 588 V FR DLY+ LNVFPI PLRER DIP L + F RL ++ +R Sbjct: 456 VKQGSFREDLYFFLNVFPIECRPLRERVADIPELTQYFLKLACERLNLPKPTVTKANIRE 515 Query: 589 LSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIV---LPEPETPPAATVVALEGEDE 645 L WPGNVREL+NVIER +L+RG+ L L + L E +T V+ E + Sbjct: 516 LQAYHWPGNVRELQNVIERGAILSRGDKLVLEFHKLGRKRLSELDTE----VMTEEQMRD 571 Query: 646 YQL--IVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 Q+ I+ LK TNG V+G GAA LG++ TTL SR+K+ GI Sbjct: 572 LQIKNIIACLKMTNGKVSGDDGAANLLGIRPTTLYSRIKKFGI 614 >UniRef50_Q897M6 Transcriptional regulatory protein n=1 Tax=Clostridium tetani RepID=Q897M6_CLOTE Length = 567 Score = 268 bits (684), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 149/327 (45%), Positives = 208/327 (63%), Gaps = 18/327 (5%) Query: 369 EQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGR 428 ++ N+ F IIG+S+ + + A+++S VLI GE+GTGKEL A AIH S R Sbjct: 248 DESNSASYSFDNIIGKSDKINKTKDLAKKAAKTNSNVLIRGESGTGKELFAHAIHMESER 307 Query: 429 NNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQ-RIGRFELADKSSLFLDEVGDMPL 487 +K+NCAA+P LLES+LFG+E GAFTGA + +IG+FELAD ++FLDE+GDMPL Sbjct: 308 VYGNFIKLNCAAIPRDLLESELFGYEGGAFTGAKKEGKIGKFELADGGTIFLDEIGDMPL 367 Query: 488 ELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPI 547 +Q KLLRVLQE+E ER+G+ + + DVR+I+ATNRDL+KM+ + EFR DLYYRLNV + Sbjct: 368 HMQAKLLRVLQEREVERIGATRSKKIDVRVISATNRDLEKMIKEGEFREDLYYRLNVVTV 427 Query: 548 HLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIER 607 ++PPLRER EDI +L++ KI+++LG+ S E + L N +W G VR+LEN+IER Sbjct: 428 NIPPLRERREDIKILSEYLLEKISKKLGKKTKSFSKEAMSCLMNYKWEGGVRQLENIIER 487 Query: 608 AVLLTRGNVLQLSLPDIVLPEPETPPAATV---VALEGEDEYQLIVRVLK----ETNGVV 660 AV L N + EP+ P V +E D +LI +V K ET Sbjct: 488 AVNLVEHN---------EMIEPKHFPGNIVSNKYIVEDSDLNKLINQVEKDIILETLIYC 538 Query: 661 AGPKG-AAQRLGLKRTTLLSRMKRLGI 686 K AA++L + RT+L ++ + I Sbjct: 539 NWNKTLAAKKLNISRTSLYEKIAKHNI 565 >UniRef50_Q3ABV5 Sigma-54 dependent transcriptional regulator n=3 Tax=Bacteria RepID=Q3ABV5_CARHZ Length = 732 Score = 268 bits (684), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 151/323 (46%), Positives = 196/323 (60%), Gaps = 29/323 (8%) Query: 381 IIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAA 440 I G++E + V K +E A SD VLI GE+G GKE+ AR IH LS R ++ V +NCAA Sbjct: 422 ITGQTEKIIEVKKLIEKAAMSDGNVLIQGESGVGKEIAARTIHYLSERADKPFVAINCAA 481 Query: 441 MPAGLLESDLFGHERGAFTGAS-AQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQE 499 +P LLES+LFG+E GAFTGA + G+ E AD +LFLDE+GDMPL +Q KLLR +Q Sbjct: 482 IPENLLESELFGYEEGAFTGAKRGGKAGKIEQADGGTLFLDEIGDMPLSMQVKLLRFIQN 541 Query: 500 QEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDI 559 +EFER+GSN + D+R+IAATN+ L K+V + FR DLYYRLNVF I++PPLRER +DI Sbjct: 542 REFERIGSNTPRKVDIRIIAATNQPLAKLVKEGRFRMDLYYRLNVFNINIPPLRERRDDI 601 Query: 560 PLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQL 619 PLL F + R + +E + L N WPGN+REL+NVIERA L GN+++ Sbjct: 602 PLLVNRFMNEFCERRKMAPKIVTSEAMNILMNYSWPGNIRELQNVIERAYYLAEGNLIK- 660 Query: 620 SLPDIVLPEPETPPAA-TVVALEGED--------------EYQLIVRVLKETNGVVAGPK 664 PE PA T AL GE E +LI+ LK TN Sbjct: 661 ---------PEHLPAQLTSKALSGERITKITTFKEAVAEVEKKLIIEGLKATN---YNKL 708 Query: 665 GAAQRLGLKRTTLLSRMKRLGID 687 A+ LG+ R TL ++K GI+ Sbjct: 709 ACAKLLGIPRATLYQKIKEYGIE 731 >UniRef50_B3DZA5 Transcriptional regulator NifA, contains GAF, AAA-type ATPase, and DNA binding domains n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DZA5_METI4 Length = 529 Score = 268 bits (684), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 156/336 (46%), Positives = 209/336 (62%), Gaps = 31/336 (9%) Query: 379 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNC 438 G +IG+S+ M +V+ V VA S STVL+ GE+GTGKE+IAR IH LS R +K+NC Sbjct: 194 GGVIGQSKQMQAVMDLVYHVAPSRSTVLLRGESGTGKEVIARTIHYLSPRKEGPFIKVNC 253 Query: 439 AAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQ 498 +A+P +LES+LFGHE+GAFTGA +R GRFELA +LFLDE+GD+ +Q KLLRVLQ Sbjct: 254 SALPETILESELFGHEKGAFTGALFERKGRFELAHGGTLFLDEIGDISPAVQVKLLRVLQ 313 Query: 499 EQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPED 558 E+EFER+G NK I+ DVR+I ATN++L++ V EFR+DLY+R+NV I LPPLRER ED Sbjct: 314 EREFERVGGNKTIRVDVRVITATNKNLEEAVLKGEFRADLYFRINVVSISLPPLRERKED 373 Query: 559 IPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVL- 617 IPLLA KI + L R + P E L+ L N WPGNVRELEN +ERA +R N + Sbjct: 374 IPLLADHILNKIGKELNRKLRITP-EALKLLINCHWPGNVRELENCLERAATNSRNNWID 432 Query: 618 ---------QLSLPDI------VLPEP-----------ETPPAATVVALEGEDEYQLIVR 651 Q S P + V+ P ETP ++ L +D + I++ Sbjct: 433 EIDVACRRNQCSSPMLWKKELQVISTPVVSSEEAKSREETPRSSFFSPLISDDPKEKIIQ 492 Query: 652 VLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 +++ V A AA+ L + L +K+ GI+ Sbjct: 493 AMEKCGWVQA---KAARLLNITPRQLGYALKKYGIE 525 >UniRef50_Q1D245 Sigma-54 dependent DNA-binding response regulator MrpB n=3 Tax=Cystobacterineae RepID=Q1D245_MYXXD Length = 488 Score = 268 bits (684), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 160/370 (43%), Positives = 221/370 (59%), Gaps = 35/370 (9%) Query: 342 IAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQS 401 + V+ AL Y+++ R + + EN A + G+I+G S M ++K++ V S Sbjct: 118 LVVERALEYRQLSRRADEVHRENAA---------ARLGDIVGTSPLMQQLVKEIGKVTGS 168 Query: 402 DSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGA 461 +TVLI GE+GTGKELIAR IHN S R + +NC+A+ LLES+LFGHE+GAFTGA Sbjct: 169 HATVLITGESGTGKELIARVIHNYSYDEPRPFIGINCSAIVDTLLESELFGHEKGAFTGA 228 Query: 462 SAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAAT 521 +A + G+FELA+ ++FLDE+GDM L LQ KLLRVLQE+EFER+G K I+ R+IAAT Sbjct: 229 TAGKPGKFELAEDGTVFLDEIGDMSLMLQAKLLRVLQEREFERVGGVKRIKLRARVIAAT 288 Query: 522 NRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSI 581 +R L + V FR DLY RL V + +PPLRER EDIP L K +I ++ + + + Sbjct: 289 HRALVEEVEAGRFREDLYQRLKVITLQIPPLRERREDIPPLVKHLLERINEKVHKRVTRV 348 Query: 582 PAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQL-SLPDIVLPEPETPP------- 633 P E + L+ + W GNVRELENV+ RAV+L G+VL+ LP + P P P Sbjct: 349 PGEVMERLTRLPWRGNVRELENVLTRAVVLAPGDVLRGDDLPALESPLPSPEPGRATSAH 408 Query: 634 --AATVVALEGED-----------EYQLIVRVLKETNGVVAGPKG-AAQRLGLKRTTLLS 679 A+ + A ED E QLI R + V G KG Q LG+ R TL Sbjct: 409 HTASAMFAAPAEDDASLIPTLEEAERQLIARAMT----VTKGHKGRTCQILGISRPTLER 464 Query: 680 RMKRLGIDKS 689 ++++ G+ +S Sbjct: 465 KLQKYGLAQS 474 >UniRef50_A6TCX4 Anaerobic nitric oxide reductase transcription regulator norR n=84 Tax=Gammaproteobacteria RepID=NORR_KLEP7 Length = 516 Score = 267 bits (683), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 151/331 (45%), Positives = 211/331 (63%), Gaps = 9/331 (2%) Query: 284 PYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIA 343 PY+ ++ ++ LPL +G T++G L L + F + + LR IA VA A Sbjct: 97 PYDGLIPGHESLKVHACVGLPLFAGQTLIGALTLDGMDADRFDSFSDEELRLIAALVAGA 156 Query: 344 VDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDS 403 ++NAL L RL +N+ + +N E EIIG S M + K++++VA SD Sbjct: 157 LNNAL-------LIARLEAQNVLPAQAVNYPLPERQEIIGLSGPMLQLKKEIDIVAASDL 209 Query: 404 TVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASA 463 VLI GETGTGKEL+A+A+H S R +V +NCAA+P + ES+LFGH +GAFTGA + Sbjct: 210 NVLISGETGTGKELVAKAVHQGSPRAANPLVYLNCAALPESVAESELFGHVKGAFTGAIS 269 Query: 464 QRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNR 523 R G+FE+AD +LFLDE+G++ L LQ KLLRVLQ + +R+G ++ ++ DVR++AATNR Sbjct: 270 NRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRSLRVDVRVLAATNR 329 Query: 524 DLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPA 583 DL++ V + FR+DLY+RL+VFP+ +PPLRER D+ LLA F + R+G I A Sbjct: 330 DLRQEVVEGRFRADLYHRLSVFPLSVPPLRERESDVVLLAGYFCEQCRLRMGL-ARVILA 388 Query: 584 ETLRT-LSNMEWPGNVRELENVIERAVLLTR 613 E R L WPGNVRELE+ I RAV+L R Sbjct: 389 EAARNRLQQWSWPGNVRELEHAIHRAVVLAR 419 >UniRef50_D0LSM1 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LSM1_HALO1 Length = 557 Score = 267 bits (683), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 170/406 (41%), Positives = 240/406 (59%), Gaps = 20/406 (4%) Query: 297 IQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRL 356 +Q PL+ LGVL + + T ++ ++LR +AE A A+ A A++++ + Sbjct: 152 VQGFVGQPLICRGQRLGVLGV--FVRQPVTQSSTSVLRILAEHAAAAIATARAFEQVDEM 209 Query: 357 KERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKE 416 + +L EN L E + + D E ++G S AM V +++ VA + + VLILGE+GTGKE Sbjct: 210 RRQLQAENAYLREVVADRDHE---MVGESTAMAHVRGEIQAVAPTHANVLILGESGTGKE 266 Query: 417 LIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSS 476 L+ARA+H S R ++++NCA++ L ES+ FGH +GAF+GA R G FE A+ + Sbjct: 267 LVARAVHRASRRAAGPLIEVNCASVVRELAESEFFGHTKGAFSGAIRDRAGWFEAAEGGT 326 Query: 477 LFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRS 536 LFLDE+ ++PLELQ KLLRVLQE + R+G + DVR++AATNRDLK+ VA FR Sbjct: 327 LFLDEIAELPLELQGKLLRVLQEGRYARVGETRTRDADVRIVAATNRDLKEEVAAGRFRE 386 Query: 537 DLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPG 596 DL+YRLNVFPI +PPLR+R D+P LA +I R + ++ E L L WPG Sbjct: 387 DLFYRLNVFPIRVPPLRDRAGDMPALAGHLLAQICRAMKVPPVTLDNEQLGRLQAHTWPG 446 Query: 597 NVRELENVIERAVLL--TRGNVLQLSL---PDIVLPEPETPPA---------ATVVALEG 642 NVREL NV+ERAV++ +R + + + D +P A AT+ L Sbjct: 447 NVRELRNVLERAVIVAASRKGPVAVRIDASTDASGAQPSVASAAGRADAGRVATLSELR- 505 Query: 643 EDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDK 688 E E + I L G V GP GAA LG+K TTL SR+KR G+ K Sbjct: 506 ERERENIAAALDACGGRVYGPSGAAALLGVKPTTLASRIKRYGLAK 551 >UniRef50_Q2LXQ0 Response regulator with sigma 54 interaction domain n=2 Tax=Deltaproteobacteria RepID=Q2LXQ0_SYNAS Length = 502 Score = 267 bits (683), Expect = 9e-70, Method: Compositional matrix adjust. Identities = 126/237 (53%), Positives = 170/237 (71%) Query: 381 IIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAA 440 I+G SE + + K +E VA + +T+LI GETGTGKELIA AIH S R + +K+NC A Sbjct: 139 IVGCSEKIREIYKTIEKVASTKTTILITGETGTGKELIAHAIHRGSPRKDNAYIKINCGA 198 Query: 441 MPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQ 500 + L+E++LFG+E+GAFTGA++ + G+FELAD+ ++FLDE+G++P ++Q KLL+VLQ+Q Sbjct: 199 IAKNLIEAELFGYEKGAFTGAASAKPGKFELADQGTIFLDEIGEIPRDMQVKLLQVLQDQ 258 Query: 501 EFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIP 560 FER+G K IQ DVR+IAATNRDL K + + FR DLYYRLNV PI +PPLRER EDI Sbjct: 259 TFERVGGIKTIQVDVRIIAATNRDLIKEIKEGNFREDLYYRLNVVPIKMPPLRERKEDII 318 Query: 561 LLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVL 617 L F + +L +I I + L WPGN+RELEN+IER +LLT+GN + Sbjct: 319 PLTHYFLDRFNDKLNMDIKGIDPQVLECFKKYNWPGNIRELENLIERIILLTKGNTI 375 >UniRef50_B5Y7I9 Acetoacetate metabolism regulatory protein AtoC (Ornithine/argininedecarboxylase inhibitor) (Ornithine decarboxylase antizyme) n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y7I9_COPPD Length = 459 Score = 267 bits (683), Expect = 9e-70, Method: Compositional matrix adjust. Identities = 139/265 (52%), Positives = 178/265 (67%), Gaps = 3/265 (1%) Query: 381 IIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAA 440 ++G S AM V K + VA +D TVLI GE+GTGKEL++RAIH S RN V +NCAA Sbjct: 153 MVGMSAAMQEVYKLIGRVASTDVTVLITGESGTGKELVSRAIHYNSPRNKGPFVVVNCAA 212 Query: 441 MPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQ 500 +P LLES+LFG+E+GAFTGA ++IG+FELA+ ++ LDE+GDM LQ K+LRVLQE Sbjct: 213 IPEDLLESELFGYEKGAFTGADERKIGKFELANHGTILLDEIGDMSPMLQAKILRVLQEH 272 Query: 501 EFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIP 560 ER+G + I DVR++AATN+DL+ +V FR DLY+RLNV I LPPLRER EDIP Sbjct: 273 VIERIGGTRSIPVDVRVLAATNKDLQSLVKSGSFREDLYFRLNVVQIQLPPLRERKEDIP 332 Query: 561 LLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLS 620 LLA F K A + + + E + L ++PGNVRELEN+I RAV L G VL L Sbjct: 333 LLADHFIKKYAAETSKEVTGVTPEVMAALMAYDYPGNVRELENIIARAVALCSGKVLTLD 392 Query: 621 L--PDIVLPEPETPPAATVVALEGE 643 + P +V P+P P V+ LE E Sbjct: 393 VLPPQVVEPKPALRPLKEVL-LEAE 416 >UniRef50_Q2RVQ1 Transcriptional regulator, NifA, Fis family n=3 Tax=Alphaproteobacteria RepID=Q2RVQ1_RHORT Length = 600 Score = 267 bits (683), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 146/336 (43%), Positives = 209/336 (62%), Gaps = 12/336 (3%) Query: 291 DTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTT---NLNLLRQIAERVAIAVDNA 347 D +++Q++ +P+ G G L + + ++ ++ L +A +A V Sbjct: 126 DGLDDEVQSMICVPIKGGVKPFGSLSIERHRDRGTRFKFEHDVRFLTMVATLIAQTVS-- 183 Query: 348 LAYQEIHRLKERLVDENLALTEQLNNVDSEFG-----EIIGRSEAMYSVLKQVEMVAQSD 402 + + ++RL++E L + L + ++GRS AM + QV +A S Sbjct: 184 -LERRVVGDRDRLIEEKARLEKALPKREKPLKGTILENVVGRSSAMMKISAQVRQIAPSR 242 Query: 403 STVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGAS 462 +TVL+ GE+GTGKELIA+AIH LS R+++ +K+NCAA+P LLES+LFGHE+GAFTGA+ Sbjct: 243 ATVLLRGESGTGKELIAQAIHYLSPRSDKPFIKVNCAALPETLLESELFGHEKGAFTGAT 302 Query: 463 AQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATN 522 +R GRFE+A +LFLDE+G++ + Q KLLRVLQE EFER+G K I+ DVRL+AATN Sbjct: 303 TERKGRFEMASGGTLFLDEIGEITVHFQAKLLRVLQEGEFERVGGGKTIKVDVRLVAATN 362 Query: 523 RDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIP 582 +DL+ V EFR+DLYYR+NV PI LP LRER ED+PLLA+ F K GR++ Sbjct: 363 KDLEDAVTRGEFRADLYYRINVVPIFLPALRERREDVPLLAQFFLTKFNEENGRSL-RFS 421 Query: 583 AETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQ 618 L + +PGNVRELEN + RA L + V+Q Sbjct: 422 EGALTAMGGCNFPGNVRELENCVCRAATLAQDEVIQ 457 >UniRef50_A6C332 Two component, sigma54 specific, transcriptional regulator, Fis family protein n=2 Tax=Bacteria RepID=A6C332_9PLAN Length = 1035 Score = 267 bits (683), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 151/345 (43%), Positives = 215/345 (62%), Gaps = 23/345 (6%) Query: 313 GVLKLAQ-CEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERL------VDEN- 364 G + L Q ++ +L L + + +IA+ + +Q++ RL E + +D+ Sbjct: 613 GFVALGQRTTGSAYSAEDLTFLNAMGQITSIALHSTKIHQDLRRLNEEMRIKVEKIDDQR 672 Query: 365 ---LALTEQLNNV-----------DSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGE 410 L +L N D + G I G S A+ SV++ V VA S+STVL+ GE Sbjct: 673 RLVSVLQSELTNSQEIAERSTPAHDVQRGMIKGNSPAIRSVMETVRKVANSESTVLVRGE 732 Query: 411 TGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFE 470 +GTGKEL+A+A+H S R+ + +V++NCAA+ LLES+LFGH +GAFTGA R+GRFE Sbjct: 733 SGTGKELLAQAVHENSSRHEKPLVRVNCAALSPSLLESELFGHVKGAFTGAHEDRVGRFE 792 Query: 471 LADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVA 530 LA+ +LFLDE+GD+ L+ Q KLLRVLQE+ FER+G ++ + DVRLI AT+++L++ + Sbjct: 793 LANGGTLFLDEIGDISLDTQVKLLRVLQERAFERVGGSETLHVDVRLITATHQNLEQRIT 852 Query: 531 DREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLS 590 + FR DLYYRLNV I LPPLRER EDI LA F + A RLG+ I I + + L Sbjct: 853 EGLFREDLYYRLNVISITLPPLRERREDIFELAFYFLKRTANRLGKRISHIDPDAIEALE 912 Query: 591 NMEWPGNVRELENVIERAVLLTRGNVLQLS-LPDIVLPEPETPPA 634 WPGN+R+LENVIERAV+L V+ + LP +L + + PA Sbjct: 913 RAPWPGNIRQLENVIERAVVLAESEVITMKDLPADLLEQKKRLPA 957 >UniRef50_Q06065 Acetoacetate metabolism regulatory protein atoC n=32 Tax=Proteobacteria RepID=ATOC_ECOLI Length = 461 Score = 267 bits (682), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 149/322 (46%), Positives = 202/322 (62%), Gaps = 12/322 (3%) Query: 377 EFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKM 436 ++G I+ S AM + K +A S ++VLI GE+GTGKELIARAIH S R +K+ Sbjct: 141 QWGHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKV 200 Query: 437 NCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRV 496 NCAA+P LLES+LFGHE+GAFTGA R G FE A++ +L LDE+G+MPL LQ KLLR+ Sbjct: 201 NCAALPESLLESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEIGEMPLVLQAKLLRI 260 Query: 497 LQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERP 556 LQE+EFER+G ++ I+ D+R+IAATNRDL+ MV + FR DL+YRLNV + LPPLR+R Sbjct: 261 LQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRLNVIHLILPPLRDRR 320 Query: 557 EDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNV 616 EDI LLA F K + R+I I + L+ WPGN+REL NVIERAV++ G + Sbjct: 321 EDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMNSGPI 380 Query: 617 L-------QLSLPDIVLPEPETPPAATVVALE--GEDEYQLIVRVLKETNGVVAGPKGAA 667 + Q+ P E +T P E E ++I+ VL++ G A Sbjct: 381 IFSEDLPPQIRQPVCNAGEVKTAPVGERNLKEEIKRVEKRIIMEVLEQQEG---NRTRTA 437 Query: 668 QRLGLKRTTLLSRMKRLGIDKS 689 LG+ R L+ +++ GID + Sbjct: 438 LMLGISRRALMYKLQEYGIDPA 459 >UniRef50_C1SIN5 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SIN5_9BACT Length = 431 Score = 267 bits (682), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 159/392 (40%), Positives = 241/392 (61%), Gaps = 22/392 (5%) Query: 303 LPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAI-AVDNALAYQEIHRLKERLV 361 + +M G T LG++ V T + ++ E + + AVD +I +L + L Sbjct: 54 MDVMDGLTFLGMMNRKGHSVPVIVITAFSTVKTAVESMKLGAVDYLTKPVDIPQLMDALE 113 Query: 362 DENLALTEQLNNVDS-EFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIAR 420 N + L V++ FG + + E + S+++Q+++VA +D+TVLILGE+GTGKE++AR Sbjct: 114 KINEQSGDVLTPVENYRFGGVYTQ-EGLGSIIEQLKLVAPTDATVLILGESGTGKEIVAR 172 Query: 421 AIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLD 480 +IH+ S R R + +NCAA+ ++ES+LFGH +GAFT A G FE AD +LFLD Sbjct: 173 SIHDNSKRAQRPYLAINCAALSENIIESELFGHVKGAFTTAVKDNKGLFEAADGGTLFLD 232 Query: 481 EVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYY 540 E+G++ L +Q KLLRVLQE FER+G + ++T+VR++AATNR+LKK+ +FR DLY+ Sbjct: 233 EIGELSLNVQAKLLRVLQEGAFERVGDTRTLKTNVRIVAATNRNLKKLSEKGDFREDLYF 292 Query: 541 RLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRE 600 RL VFP+ +PPLRER E+I L K F K A +LG+ I S +R LS+ +PGN+RE Sbjct: 293 RLAVFPVEVPPLRERKEEIAPLVKFFIDKHAEKLGKLIKSADPAYIRKLSDYGFPGNIRE 352 Query: 601 LENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATV-----VALEGEDEYQLIVRVLKE 655 LEN++ER+++LT G L EP T PA +++ G +E LI++ LK+ Sbjct: 353 LENIVERSIILTTGTKL----------EPVTLPAFGTERDGGLSIRG-NERDLIIKALKK 401 Query: 656 TNGVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 T G AA+ L + R TL +++K ++ Sbjct: 402 TGG---NKTKAAEILQISRRTLHNKLKEFDLE 430 >UniRef50_C1SI14 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SI14_9BACT Length = 507 Score = 267 bits (682), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 133/305 (43%), Positives = 197/305 (64%), Gaps = 5/305 (1%) Query: 387 AMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLL 446 ++++ + + VA+ ++VLI GETG GKE+ A IH S RNN +K+NC +P L+ Sbjct: 202 CLHNLFESAKNVAKFSTSVLITGETGVGKEVFANYIHRNSTRNNEPFIKVNCGTIPENLI 261 Query: 447 ESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLG 506 +++LFGHE+GAFTGA + + GRFELADK +LFLDE+ ++PL Q KLLRV+Q EFERLG Sbjct: 262 DNELFGHEKGAFTGADSTQKGRFELADKGTLFLDELAELPLNCQAKLLRVVQFGEFERLG 321 Query: 507 SNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAF 566 K I+ +VR+IAATN+DL +M+ D +FR DLY+R+NVFP+ +PP+RER +DIP L Sbjct: 322 GTKTIKVNVRIIAATNKDLIQMIEDGDFREDLYWRINVFPLKIPPIRERKKDIPDLITCL 381 Query: 567 TFKIARRLG-RNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGN--VLQLSLPD 623 KI +RL I + + + +WPGNVRE+EN +ER ++ G+ ++L + D Sbjct: 382 IMKICKRLEITEPPVISPDQMEKIIQYDWPGNVREMENFLEREIIQNFGSAQAIELKISD 441 Query: 624 IVLPEPETPPAATVVALEGEDEY--QLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRM 681 + E P + D + I+++L++T ++G KGAA L + TL RM Sbjct: 442 LDSTERHKQPDKNAACNKDMDNMMREHILKILEQTKWRISGTKGAASLLKMHPNTLRHRM 501 Query: 682 KRLGI 686 K+LG+ Sbjct: 502 KKLGL 506 >UniRef50_Q1D552 Sigma-54 dependent DNA-binding reponse regulator Nla6 n=8 Tax=Cystobacterineae RepID=Q1D552_MYXXD Length = 484 Score = 267 bits (682), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 139/298 (46%), Positives = 196/298 (65%), Gaps = 19/298 (6%) Query: 339 RVAIAVDNALAYQEIHR----LKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQ 394 R+ + +D AL +E R L+ RL +QL + D +I +S M V++ Sbjct: 110 RLKVCIDRALEKKETMREVQTLRRRL--------KQLGSSD-----LIAQSVGMRKVIEL 156 Query: 395 VEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHE 454 VE VA S ++V I GE+GTGKE+++RA+HNLS R ++ + +NCA++PA L+ES+LFGHE Sbjct: 157 VEKVAPSKASVSISGESGTGKEVVSRAVHNLSLRRDKPFIAINCASIPATLIESELFGHE 216 Query: 455 RGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTD 514 RGAFTGA +R G FE+A +LFLDE+G++P+ELQ KLLRVL+E + RLG I+ D Sbjct: 217 RGAFTGADQRRPGVFEMAHGGTLFLDELGEIPIELQAKLLRVLEEGKLRRLGGKVEIEVD 276 Query: 515 VRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRL 574 VR++ ATNRDLK+ + + FR DLY+RLNVF IHLPPLRER +D+P+L + F K Sbjct: 277 VRVLCATNRDLKQEIKNGRFREDLYFRLNVFQIHLPPLRERRDDVPILVQHFVDKFRGDS 336 Query: 575 GRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSL--PDIVLPEPE 630 G+ + + E + L N +WPGN+REL N +ERAV+L G ++ PD+ PE Sbjct: 337 GKRVSGVHPEAMEVLKNYDWPGNIRELRNAVERAVILCDGELITREHLPPDMAGKSPE 394 >UniRef50_C0QF87 Transcriptional regulator (PAS/PAC domain protein) n=2 Tax=Bacteria RepID=C0QF87_DESAH Length = 710 Score = 266 bits (681), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 146/319 (45%), Positives = 202/319 (63%), Gaps = 15/319 (4%) Query: 378 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMN 437 F +II EA + ++ E+ AQS S++LI GE+GTGKEL+A++IH ++R+VK+N Sbjct: 393 FDQIITSHEAFKKIKERAEIAAQSSSSILITGESGTGKELMAQSIHEAGVSRDKRLVKVN 452 Query: 438 CAAMPAGLLESDLFGHERGAFTGASAQ-RIGRFELADKSSLFLDEVGDMPLELQPKLLRV 496 CAA+PA LLES+ FG+ GAFTGA Q ++G+ LAD +LFLDE+GDM LQ KLLRV Sbjct: 453 CAAIPADLLESEFFGYAPGAFTGAQKQGKLGKLALADGGTLFLDEIGDMSPNLQSKLLRV 512 Query: 497 LQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERP 556 LQ++ FE +GSNK R+IAATN+DL +MV ++ FR DLYYRLNV H+PPLRERP Sbjct: 513 LQDKSFEPIGSNKTTHVSFRVIAATNQDLHQMVQEKRFRGDLYYRLNVIHFHIPPLRERP 572 Query: 557 EDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNV 616 +DI LL F K LG I I + + L WPGNVRELENV+ER +GN+ Sbjct: 573 QDIILLVHFFIEKYNHILGSAIQDISDDAMTVLLEHTWPGNVRELENVVERVANFVKGNL 632 Query: 617 LQLS--LPDIVLPEPETP------PAATVVALEG--EDEYQLIVR-VLKETNGVVAGPKG 665 + + P++ E ++P P +T L +D +L ++ L+E +G A Sbjct: 633 VDIDDLPPNLKEKEKKSPSFMAGSPLSTKQRLHKSRDDHDKLAIQSALREADGNKA---K 689 Query: 666 AAQRLGLKRTTLLSRMKRL 684 AA+ LG+ R+ L ++M R Sbjct: 690 AAKILGISRSWLYTKMARF 708 >UniRef50_B8FJU0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FJU0_DESAA Length = 443 Score = 266 bits (681), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 148/310 (47%), Positives = 199/310 (64%), Gaps = 15/310 (4%) Query: 380 EIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCA 439 +II + + M L+ V+ VA S + VLI GE+GTGKEL AR IH S R ++ V +N A Sbjct: 134 KIITQDDRMKRCLEVVDSVADSKAAVLISGESGTGKELFARQIHYSSSRKDKNFVAVNVA 193 Query: 440 AMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQE 499 A+P LLES+LFGHE+GAFTGA ++IG+FELA +L LDE+ +M + LQ KLLRVLQE Sbjct: 194 ALPETLLESELFGHEKGAFTGAINRKIGKFELASGGTLLLDEITEMDIGLQAKLLRVLQE 253 Query: 500 QEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDI 559 E +R+G + DVR++A TNRD+++ +AD +FRSDLYYRL V P+ LPPLRER D+ Sbjct: 254 SEVDRVGGTSPVNVDVRVVATTNRDVEQAIADGKFRSDLYYRLAVIPLKLPPLRERSSDV 313 Query: 560 PLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQL 619 LLA+ F K R G+N+ + TL N++WPGNVRELEN IERAVLL +G+ Q+ Sbjct: 314 ILLAEHFIRKYNARDGKNVKGLTKNAQNTLLNLDWPGNVRELENTIERAVLLCKGD--QI 371 Query: 620 SLPDIVLPEPETPPAA--------TVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLG 671 D+ + P PP A +V E E Q+I + L +T G AAQ LG Sbjct: 372 DHNDLFMEPP--PPKALPRQDSIPSVSTTLREMEEQMIYQALDQTEG---NRTHAAQILG 426 Query: 672 LKRTTLLSRM 681 + TL +++ Sbjct: 427 ISVRTLRNKL 436 >UniRef50_C9S255 Proprionate catabolism activator, Fis family n=2 Tax=Geobacillus RepID=C9S255_GEOSY Length = 639 Score = 266 bits (681), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 148/322 (45%), Positives = 207/322 (64%), Gaps = 20/322 (6%) Query: 378 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMN 437 F IIG++ ++ + + AQ+D+T+LI GETGTGKEL A++IHN S RN V +N Sbjct: 314 FEHIIGKNSTFMKLIDKAQHYAQTDATILIRGETGTGKELFAQSIHNASNRNRHPFVAVN 373 Query: 438 CAAMPAGLLESDLFGHERGAFTGA-SAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRV 496 CAA+P +LES+LFG+E GAFTGA + G FELA + ++FLDE+G+M L LQ +LLRV Sbjct: 374 CAALPESILESELFGYEEGAFTGARKGGKQGLFELAHRGTIFLDEIGEMSLPLQSRLLRV 433 Query: 497 LQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERP 556 LQE+E RLGS+ +I DVR+IAATNRDLK MV D FR DLYYRLNV I LPPLRER Sbjct: 434 LQEKEVMRLGSDMVIPIDVRIIAATNRDLKSMVKDGLFRQDLYYRLNVLSIELPPLRERL 493 Query: 557 EDIPLLAKAF--TFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRG 614 +D+P L + F +K+ ++L I+ + + L L + WPGN+RELEN+ ER +L + Sbjct: 494 DDLPDLFRFFLKNYKLDKQL---IEKVLSIMLPVLCHHNWPGNIRELENIAERVSVLLKA 550 Query: 615 NVLQLSLPDIVLPEPETPPAATVVALEGED--------EYQLIVRVLKETNGVVAGPKGA 666 +V ++ +++ + + + L+ D E Q I++VL+E G A Sbjct: 551 HV---TMDEVLAEVKKELFGSHIEILDSTDLTKEVENWERQRILQVLREVRG---SKTKA 604 Query: 667 AQRLGLKRTTLLSRMKRLGIDK 688 A LG+ RTTL ++K GID+ Sbjct: 605 AALLGISRTTLWRKIKDYGIDR 626 >UniRef50_Q01Q08 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01Q08_SOLUE Length = 428 Score = 266 bits (681), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 156/353 (44%), Positives = 218/353 (61%), Gaps = 15/353 (4%) Query: 338 ERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEM 397 +RV +AV NA+ + + ERL E + T ++ IG + A ++Q M Sbjct: 89 DRVLLAVKNAMEQSTLRQENERL-RELVGSTPKM----------IGATPAWQRAVEQASM 137 Query: 398 VAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGA 457 A+SD+ VL++GE+GTGKEL+A IH+ S N VK+NCAA+P LLE++LFGHE+G+ Sbjct: 138 AARSDARVLLIGESGTGKELLAAHIHSASPFANGPFVKVNCAAIPTELLETELFGHEKGS 197 Query: 458 FTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRL 517 FTGA+ R G+FELAD ++FLDEVGD+ Q KLLRVLQE EF R+G II+ VR+ Sbjct: 198 FTGATNMRRGKFELADGGTIFLDEVGDLHGGSQAKLLRVLQEGEFHRVGGEAIIRVSVRV 257 Query: 518 IAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRN 577 ++ATNRDL+ MVA +FR DLYYRL+V PI +P LRERP DI LLA+ F + R Sbjct: 258 VSATNRDLQAMVAAEKFREDLYYRLSVVPIRVPALRERPHDIRLLAEYFLEEFCSRNNFK 317 Query: 578 IDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVL-QLSLPDIVLPEPETPPAAT 636 + L WPGN REL NV+ER +LT G L + ++P V + E P +T Sbjct: 318 RKVMDESVYPMLEAYHWPGNARELRNVVERMAILTPGERLTRDAIPVEVRVQREAGPKST 377 Query: 637 VVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKS 689 + E + I+R L+E++ V+ GAA+ LG++RT L R++ LG+ + Sbjct: 378 IQEARESAEREHILRALEESSWNVS---GAARTLGMERTNLHKRIRALGLTRG 427 >UniRef50_Q1IRB0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IRB0_ACIBL Length = 458 Score = 266 bits (680), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 149/344 (43%), Positives = 215/344 (62%), Gaps = 17/344 (4%) Query: 357 KERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKE 416 ++RL+ +N+ L E+ F IIG M + ++++ +A SDSTVL+LGE+GTGKE Sbjct: 119 RQRLMRDNVVLREEYAR-KMGFPRIIGEHPTMQNSAREMQRIAGSDSTVLLLGESGTGKE 177 Query: 417 LIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSS 476 L ARAIH LS R+ + V +NCAAMP GL+E++LFGHE+GAFTGA+ ++ G+FE+A++ + Sbjct: 178 LFARAIHQLSIRSTQPFVALNCAAMPEGLIENELFGHEKGAFTGANTRKSGKFEMANRGT 237 Query: 477 LFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRS 536 +FLDE+G++PL LQ KLLRVL+E ERLGS +Q DVR++AATNR+L++ V FR Sbjct: 238 IFLDEIGELPLNLQSKLLRVLEEHVVERLGSTMPLQLDVRVVAATNRELEQAVEAGAFRR 297 Query: 537 DLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPG 596 DLYYRL VFPI +PPLRER ED+ L+A+ F + L + S+ + L L WPG Sbjct: 298 DLYYRLAVFPIRIPPLRERGEDVILIAEHFLAHFRQELKKPRLSLAPDALAALRAHLWPG 357 Query: 597 NVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKET 656 NVREL+N IERA +L + +++ D+ L AA + D + V + Sbjct: 358 NVRELQNTIERAAIL---HDTEVTAADLGLSANLRSAAAVSLGEHSIDMGGSLPEVSAQA 414 Query: 657 NGVVAGPK-------------GAAQRLGLKRTTLLSRMKRLGID 687 + + K AA+RLG+ TLL+++ G+D Sbjct: 415 SRTIEKAKIEATLRECKWNKSAAAERLGISYKTLLTKIHGYGLD 458 >UniRef50_C8QWL5 Transcriptional regulator, NifA, Fis Family n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QWL5_9DELT Length = 539 Score = 266 bits (680), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 158/379 (41%), Positives = 231/379 (60%), Gaps = 25/379 (6%) Query: 292 TWGNQIQTLCLLPLMSGDTMLGVLKL-------AQCEEKV-FTTTNLNLLRQIAERVAIA 343 + G ++ +C+ P+ G +G L + + E+ + F T L+ Q +RV Sbjct: 136 SRGEELSFICV-PIRRGPDTIGALSVDREYREGEEFEQDLRFLTILSGLVAQTVKRV--- 191 Query: 344 VDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDS 403 Q +++ ++RL EN L +L+ I+ S M VL+ + VA S++ Sbjct: 192 -------QLVNQEQQRLEQENSQLRRELSE-KYRVSSILSNSSRMQEVLEMIHRVAASNA 243 Query: 404 TVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASA 463 TVL+ GE+GTGK ++ARA+H+ S R + +NC+A+P LLES+LFGHERGAFTGA Sbjct: 244 TVLLRGESGTGKSMVARAVHHNSKRAAGPFITVNCSALPETLLESELFGHERGAFTGAHE 303 Query: 464 QRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNR 523 R GRFELA+ +LFLDE+G++ +Q KLL V+Q++EF+R+G ++ ++ DVRLI ATN+ Sbjct: 304 TRKGRFELAEGGTLFLDEIGELSTAVQVKLLSVVQDREFQRVGGSRPLKCDVRLITATNK 363 Query: 524 DLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPA 583 DL+K VA+ FR DLYYRLNVFPI+LPPLRER DI LLA+ F K A +NI I Sbjct: 364 DLEKAVAEGTFREDLYYRLNVFPIYLPPLRERRTDILLLAEFFLEKFASENDKNIRRIST 423 Query: 584 ETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQ-LSLPDIVLPEP---ETPPAATVVA 639 + L+ WPGNVREL+N +ERAVL+ + ++ LP + E P++ A Sbjct: 424 PAIDLLTQYHWPGNVRELQNCLERAVLICDEDTIKSYHLPPTLQSSDSLREVSPSSFTAA 483 Query: 640 LEGEDEYQLIVRVLKETNG 658 +E E +LI+ LK+T+G Sbjct: 484 VES-FERELIIDALKKTDG 501 >UniRef50_B5EFV3 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Geobacter RepID=B5EFV3_GEOBB Length = 482 Score = 266 bits (680), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 142/309 (45%), Positives = 200/309 (64%), Gaps = 9/309 (2%) Query: 381 IIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAA 440 +IG S M + K V VA SD+TVLI GE+GTGKEL+ARA++N S R NR + +NCAA Sbjct: 145 MIGSSPEMIEIWKMVGTVADSDATVLIQGESGTGKELLARAVYNNSKRKNRPFLAVNCAA 204 Query: 441 MPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQ 500 +P LLES+LFGHE+GAFT A ++RIG+FE + ++FLDE+G+M Q K LRVL+ Q Sbjct: 205 LPEALLESELFGHEKGAFTDAHSRRIGKFEQCNGGTIFLDEIGEMSQANQGKFLRVLENQ 264 Query: 501 EFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIP 560 EFER+G N+ I+ DVR+IAATN+ L V ++ FR DLYYRL V LPPLR+R EDIP Sbjct: 265 EFERVGGNETIKVDVRVIAATNKSLITNVKEKTFRMDLYYRLRVVNFFLPPLRDRAEDIP 324 Query: 561 LLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLS 620 LL + F K +++ G+NI ++ ETL L++ W GN+REL+NVI A + RG++L Sbjct: 325 LLVELFVKKFSKKYGKNIKAVAPETLAMLTSHPWEGNIRELKNVINSATVFCRGDIL--- 381 Query: 621 LPDIVLPEPETPPAATVVALE--GEDEYQLIVRVLKET-NGVVAGPKGA---AQRLGLKR 674 +P V LE G+D Y++ +L+ +G+ KGA + +GL++ Sbjct: 382 VPGDFESFLTAKAGFKEVDLEAAGDDYYEVFWSMLEPVFDGICQKNKGAIYESVNMGLEK 441 Query: 675 TTLLSRMKR 683 + M++ Sbjct: 442 ALIHMAMEK 450 >UniRef50_C1SIC3 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SIC3_9BACT Length = 540 Score = 266 bits (679), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 137/321 (42%), Positives = 207/321 (64%), Gaps = 7/321 (2%) Query: 299 TLCLLPLMSGDTMLGVLKLAQCEEKVFT-TTNLNLLRQIAERVAIAVDNALAY----QEI 353 + +P+ + GVL + + K+++ TT++++L+ IA +A + + + I Sbjct: 121 SFIAVPIKHQNQTYGVLAVDKVVSKMYSITTDVDILKMIATLMASFLHKVQFFTSEMEAI 180 Query: 354 HRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGT 413 + K R+ +E L L ++ ++ ++G M VL +V+MV SDS VLI GE+GT Sbjct: 181 QQEKSRIEEEKLKLIGEVTQ-KYQYEGLVGSGRLMRKVLDKVQMVTASDSAVLIRGESGT 239 Query: 414 GKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELAD 473 GKE++A+ IH S R + V +NCAA+P L+ES+LFG+ +GAFTGA+ ++ G+FE AD Sbjct: 240 GKEVVAKTIHYNSNRRKKPFVAVNCAAIPGELIESELFGYSKGAFTGAAGEKKGKFEQAD 299 Query: 474 KSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADRE 533 ++FLDE+GDMP+E Q KLLRVLQ++ E+LG K +Q DVR++AATN++L+ V E Sbjct: 300 GGTIFLDEIGDMPMEAQSKLLRVLQDKVVEKLGGTKPVQVDVRILAATNKNLEAAVQSGE 359 Query: 534 FRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNME 593 FR DLYYRLNVF I LPPLR+R EDIP +A+ +++R +N +I E + L N Sbjct: 360 FRLDLYYRLNVFAIFLPPLRKRKEDIPEIAQHILKNLSKRYNKNY-TISPEAVTALMNCN 418 Query: 594 WPGNVRELENVIERAVLLTRG 614 +PGN+RELEN +ER+ G Sbjct: 419 YPGNIRELENCLERSAFTAGG 439 >UniRef50_Q1PVM8 Similar to sigma-54 dependent transcriptional response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PVM8_9BACT Length = 453 Score = 266 bits (679), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 154/338 (45%), Positives = 215/338 (63%), Gaps = 14/338 (4%) Query: 352 EIHRL--KERLVDENLALTEQLNNVDSEFG--EIIGRSEAMYSVLKQVEMVAQSDSTVLI 407 EI++L K+ LV N+ L +QL D ++G IIG S +M VL V ++ +++TVLI Sbjct: 116 EINKLVEKQNLVRNNILLQKQL---DEKYGLTGIIGNSASMQKVLTMVNQISGTNATVLI 172 Query: 408 LGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIG 467 GE+GTGKELIA+ IHN S R + +V +N AA+P +LES+LFGHE+G+FTGA QR G Sbjct: 173 TGESGTGKELIAKTIHNNSLRKHNPLVILNSAAIPENILESELFGHEKGSFTGALYQRKG 232 Query: 468 RFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKK 527 +FE A + + FLDE+GDMPL Q KLLRVL++ R+GSN+ I+ DVRLIAATN++L Sbjct: 233 KFEYAHRGTFFLDEIGDMPLSAQAKLLRVLEDGMITRIGSNESIEVDVRLIAATNQELGN 292 Query: 528 MVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLR 587 ++ + +FR DLY+RLNV I LPPLRER EDIPLL AF + +R + I I E + Sbjct: 293 LIKEGKFREDLYFRLNVIRIKLPPLRERLEDIPLLLDAFIREFSRLYSKEILQITPEARK 352 Query: 588 TLSNMEWPGNVRELENVIERAVLLTRGNVLQL-SLPDIVLPEPETPPAA--TVVALEGED 644 L +WPGN+REL+N IE V++T L + LPD + + + P + + + ED Sbjct: 353 ILLRYQWPGNIRELKNCIESMVVITTKKYLDVEDLPDHIEKKSDEMPVSHGLMAGMTMED 412 Query: 645 -EYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRM 681 E +LI L G + AA+ LG+ TL ++ Sbjct: 413 AEIELIKCTLASVGG---NREEAARMLGIGERTLYRKL 447 >UniRef50_C0GSN4 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GSN4_9DELT Length = 519 Score = 266 bits (679), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 181/510 (35%), Positives = 283/510 (55%), Gaps = 26/510 (5%) Query: 189 ILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQHP 248 +L I+ + LD+D+ + + K + + + L I ++H L Q Sbjct: 13 VLHEISKVIEKALDLDKALEAILKILADSLSMKRGAFSFIEEDSGLLVISASHGLTSQEK 72 Query: 249 AHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQ-----TLCLL 303 +DE +T R+F + + ++ D+A E + D G++ + + Sbjct: 73 NRGVYRMDEG--VTGRIFSTGKPFIV-----PDIAK-EPLFLDKTGSRSMEKERISFAGV 124 Query: 304 PLMSGDTMLGVLKLAQC-EEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVD 362 P+ T +GVL + + ++ + ++ LL +A VA V +++ +E L Sbjct: 125 PVTLQGTTVGVLTVDRLFDQDISLEEDIQLLSIVAAMVAQFVS---LNRQVKDREENLRR 181 Query: 363 ENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAI 422 EN L +L++ F I+G+S +M V + +E VA + +TVL+LGE+GTGK LIA I Sbjct: 182 ENQNLKTRLSSSFQRFF-IVGKSSSMLQVRQMMEKVAPTRATVLLLGESGTGKTLIAGII 240 Query: 423 HNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEV 482 H LS R +K+NCA++P LLES+LFG+E+GAFTGA + GRFE A + ++FLDE+ Sbjct: 241 HELSERGKFPFIKVNCASLPENLLESELFGYEKGAFTGAERSKPGRFEEAHRGTIFLDEI 300 Query: 483 GDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRL 542 G+MP LQ KLLR LQE+EFERLG K + DVR+IAATN++L K V + FR DLYYRL Sbjct: 301 GEMPAGLQAKLLRFLQEREFERLGGVKTHRVDVRVIAATNKELDKEVQEGRFREDLYYRL 360 Query: 543 NVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELE 602 NVFPI +P LRER EDIP L F K+AR GR + + +L L EWPGN+RE+E Sbjct: 361 NVFPIWVPSLRERREDIPSLINHFLDKMAREYGRRL-VLSNSSLDYLVEYEWPGNIREME 419 Query: 603 NVIERAVLLTRGNVLQLS-LPDIVLPEPETPPAATVVALEG---EDEYQLIVRVLKETNG 658 N++E+ +++ G ++ L LP + E P A + + E + I+ L+ + Sbjct: 420 NLMEKLSIMSEGQIVALKDLPSDMQQEKVCPGKVQEQARDHSLLDMEKKEILSALQRNSW 479 Query: 659 VVAGPKGAAQRLGLKRTTLLSRMKRLGIDK 688 + + AA+ LGL + + R+K+ +++ Sbjct: 480 IQS---RAARELGLTQRQMGYRIKKFNLEE 506 >UniRef50_Q17ZX8 Putative sigma-54 interacting protein n=8 Tax=Clostridium RepID=Q17ZX8_CLOD6 Length = 591 Score = 266 bits (679), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 138/314 (43%), Positives = 204/314 (64%), Gaps = 12/314 (3%) Query: 381 IIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAA 440 IIG S A+ + K+ + ++S STVLI GE+GTGKEL ARAIHN S R + + +NCAA Sbjct: 280 IIGESVAIRNSKKEALIASKSTSTVLITGESGTGKELFARAIHNHSNRVDNPFIAVNCAA 339 Query: 441 MPAGLLESDLFGHERGAFTGAS-AQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQE 499 +P LLES+LFG+E GAFTGA ++G FE+A K S+FLDE+GDM L LQ KLLRVLQE Sbjct: 340 IPDNLLESELFGYEEGAFTGAKKGGKLGMFEVAHKGSIFLDEIGDMSLHLQSKLLRVLQE 399 Query: 500 QEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDI 559 +E ++GS + DVR+IAATN+DL+KMV + FR DLYYRLNV PI LP LRER EDI Sbjct: 400 KELNKIGSKSNVSIDVRIIAATNKDLEKMVQNGTFREDLYYRLNVIPIKLPSLRERKEDI 459 Query: 560 PLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQL 619 PL+ K + +++L +N+ I + + + +WPGN+REL+N+IE +V ++ +++ + Sbjct: 460 PLIIKHMVKEYSKKLDKNVIDIDSRVVDAMMEYKWPGNIRELQNIIEYSVNMSSSSIITM 519 Query: 620 SLPDIVLPEPETPPAATVVALEGE-----DEYQL--IVRVLKETNGVVAGPKGAAQRLGL 672 + V+P+ + + ++ + DE + I++ L + + A+ LG+ Sbjct: 520 N----VIPQKIKNTSVEELEVKSDRIIPLDELEKIEIIKALNKYKDYKKDKELTAKALGI 575 Query: 673 KRTTLLSRMKRLGI 686 R TL ++++ I Sbjct: 576 SRATLYRKIEKYNI 589 >UniRef50_B5YH04 Transcriptional regulator n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YH04_THEYD Length = 511 Score = 265 bits (678), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 153/332 (46%), Positives = 215/332 (64%), Gaps = 14/332 (4%) Query: 297 IQTLCLLPLMSGDTMLGVLKLAQ--CEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIH 354 I LC+ P+ D +LGV+ + EE+ +L +L +A + + E + Sbjct: 116 ISFLCV-PIRIEDEILGVISADRIYAEEQGDVDDDLRVLSVVASLIG----QFIKLWESY 170 Query: 355 RLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTG 414 ++ E DEN+ L QL + F ++G+S + +VLK V VA +D+TVL+ GE+GTG Sbjct: 171 KIME---DENIILRAQLKD-RYNFPNLVGQSPSFQAVLKTVMKVASTDATVLLFGESGTG 226 Query: 415 KELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADK 474 KELIA+ IH S R V +NCAA+P LLE++LFG E+GAFTGA +RIG+FE A+ Sbjct: 227 KELIAKTIHFQSKRAKGPFVAINCAAIPENLLEAELFGSEKGAFTGA-VKRIGKFEQANG 285 Query: 475 SSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREF 534 ++FLDE+ ++PL LQPKLLRVLQE+ E LGS+K I+ DVRLI+ATN+DL + + F Sbjct: 286 GTIFLDEIAELPLSLQPKLLRVLQERTVEPLGSSKTIRVDVRLISATNKDLSEEIRKGNF 345 Query: 535 RSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEW 594 R DL++RLNV PI++PPLRER EDIPLL + + K + R SI E L+ L + +W Sbjct: 346 REDLFWRLNVIPIYIPPLRERKEDIPLLVE-YYLKSFCNIYRKSVSIDEEALKVLVSYDW 404 Query: 595 PGNVRELENVIERAVLLTRGNVLQL-SLPDIV 625 PGNVREL N IER V++T + +++ LPD V Sbjct: 405 PGNVRELANTIERLVVMTESSKIKVYDLPDTV 436 >UniRef50_B6YRB5 Nif-specific regulatory protein n=1 Tax=Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 RepID=B6YRB5_AZOPC Length = 521 Score = 265 bits (678), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 145/314 (46%), Positives = 204/314 (64%), Gaps = 14/314 (4%) Query: 381 IIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAA 440 ++G S M + V+ VA ++STV+I GE+G GKELIA AIH S R + V++NC+A Sbjct: 205 MVGNSALMRELYGLVKRVAPTNSTVIIRGESGVGKELIAEAIHKASSRIKKPFVRVNCSA 264 Query: 441 MPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQ 500 +P L+ES+LFG+E+GAFTGA Q GRFELAD ++FLDE+ D+P +Q KLLR+LQ++ Sbjct: 265 LPENLIESELFGYEKGAFTGAERQHSGRFELADGGTIFLDEIADIPFSVQVKLLRILQQR 324 Query: 501 EFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIP 560 +FER+G IQTDVR++ ATNR+L++M+ + FR DLYYR++VFPI++P LRER DI Sbjct: 325 QFERIGGTHTIQTDVRIVTATNRNLEEMLQNNTFREDLYYRIHVFPIYVPALRERRADIT 384 Query: 561 LLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQ-L 619 +L F KI ++ N+ I + L L WPGNVRELENVIERA++LT +V+ Sbjct: 385 ILTDHFIQKINKQNQTNVKRITSGALDMLMMYSWPGNVRELENVIERAMILTTDDVIHSY 444 Query: 620 SLPDIVLPEPETPPAATVVALE------GEDEYQLIVRVLKETNGVVAGPKGAAQRLGLK 673 +LP P +T ++ V + G+ E Q+I+ L G VA K A Q LG+ Sbjct: 445 NLP----PSLQTGVSSDTVKVGRLDLVLGKVERQMIMDTLIANRGNVA--KSAFQ-LGIS 497 Query: 674 RTTLLSRMKRLGID 687 + R+KR I+ Sbjct: 498 ERVMGLRIKRYNIN 511 >UniRef50_B3E8H3 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Bacteria RepID=B3E8H3_GEOLS Length = 451 Score = 265 bits (678), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 144/310 (46%), Positives = 199/310 (64%), Gaps = 3/310 (0%) Query: 380 EIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCA 439 E++ +AM V + VA + +TVLI GE+GTGKEL AR IH S R + V +NCA Sbjct: 145 EVLFAGQAMQQVRTLIADVAPTQATVLISGESGTGKELAARMIHRASPRRDAPFVALNCA 204 Query: 440 AMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQE 499 A+P LLES+LFGHE+GAFTGA+ R G+FELA +LFLDE+G++PL LQ K LRVLQE Sbjct: 205 AIPETLLESELFGHEKGAFTGATQARQGKFELASGGTLFLDEIGELPLALQSKFLRVLQE 264 Query: 500 QEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDI 559 + FER+G N+ ++ DVR+IAATNRDL++ V R FR DLYYRL+VFPIHLP LR+R + + Sbjct: 265 RVFERVGGNRELRADVRIIAATNRDLEEEVRVRRFREDLYYRLHVFPIHLPALRDRRDGL 324 Query: 560 PLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQL 619 P+L + + A + GR + I + L ++ WPGN+REL+NVIERAV+L +G V L Sbjct: 325 PVLVRYLLRRAAIQTGREVQDIEQQALAAVAEYGWPGNIRELQNVIERAVILCKGQVTLL 384 Query: 620 SLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLS 679 LP V + + + G + +L + AA++LG+ + TL Sbjct: 385 DLPGGV---RQVTASGVIPKSNGSLRDRERNDILDALATCGNNRRLAAEKLGISKRTLQY 441 Query: 680 RMKRLGIDKS 689 R+K G+ +S Sbjct: 442 RLKEYGLIES 451 >UniRef50_Q2RKJ6 Sigma54 specific transcriptional regulator with PAS sensor, Fis family n=2 Tax=Bacteria RepID=Q2RKJ6_MOOTA Length = 636 Score = 265 bits (677), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 147/310 (47%), Positives = 201/310 (64%), Gaps = 8/310 (2%) Query: 378 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMN 437 F +I+ +S M ++++ A +++TVLI GETGTGKE++A++IHN S R N V +N Sbjct: 317 FEDIVTQSPVMAKIIERARQFAAAEATVLINGETGTGKEMVAQSIHNASRRRNGPFVAVN 376 Query: 438 CAAMPAGLLESDLFGHERGAFTGA-SAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRV 496 CAA+P LLES+LFG+E GAFTGA + G FELA +LFLDE+G++ L LQ +LLRV Sbjct: 377 CAAVPENLLESELFGYEEGAFTGARKGGKKGLFELAHGGTLFLDEIGELSLNLQARLLRV 436 Query: 497 LQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERP 556 LQ++ R+G ++++ DVR+IAAT+R+LK +A FR DLYYRLNV I+LPPLRERP Sbjct: 437 LQQKAIMRVGGDRVLPVDVRIIAATHRNLKDAIARDAFRRDLYYRLNVLQINLPPLRERP 496 Query: 557 EDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNV 616 ED+PLL KA KI+RR GR E + + WPGNVRELEN++ER V+L G Sbjct: 497 EDLPLLIKALVEKISRRAGRLPPIFSEEIIARMQAYSWPGNVRELENILERLVVLRSGEE 556 Query: 617 LQLS-LPDIVLPEPETPPAATVVALEG---EDEYQLIVRVLKETNGVVAGPKGAAQRLGL 672 ++ L +I+ P P +AL G E E ++I R L T + +RLGL Sbjct: 557 VEAGDLDEILEPAENQPQPVLQLALRGTLAEMEGEIIRRTLALTGN---NKEETCRRLGL 613 Query: 673 KRTTLLSRMK 682 +TTL R+K Sbjct: 614 SKTTLWRRLK 623 >UniRef50_B3E4E8 Putative sigma54 specific transcriptional regulator n=1 Tax=Geobacter lovleyi SZ RepID=B3E4E8_GEOLS Length = 408 Score = 265 bits (677), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 153/336 (45%), Positives = 207/336 (61%), Gaps = 5/336 (1%) Query: 352 EIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGET 411 ++ +E+L EN +L + L F I+G S + ++ + E +A S +V+I GET Sbjct: 78 QLRTAREQLARENSSLKKNLRR-SFPFSSILGTSPQIRELIGKAERIADSRLSVIITGET 136 Query: 412 GTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFEL 471 GTGKEL A+AIH S R+ + V +NC+A+P + ES++FG E+G TG A RIG+ + Sbjct: 137 GTGKELFAKAIHFNSPRSAKPFVAVNCSAIPETIFESEMFGIEKGVATGVEA-RIGKIQQ 195 Query: 472 ADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVAD 531 A +LFLDEVG+MPL+LQ KLLRVL+E+ ER+GS I D+R+IAATNRDL K +A Sbjct: 196 AQGGTLFLDEVGEMPLQLQAKLLRVLEERTLERVGSRTAIPVDLRIIAATNRDLTKEIAK 255 Query: 532 REFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSN 591 FR DLYYRLN + +PPLRER DI L+A+ F K R GR I E L L Sbjct: 256 GSFREDLYYRLNGVTLRIPPLRERKGDIDLIARQFLEKWGRSCGRPPMRIAKEALERLRG 315 Query: 592 MEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGEDEYQLIVR 651 WPGNVREL+N IERAV L G+ + ++ L + T PAA +L + E QLI + Sbjct: 316 YTWPGNVRELDNEIERAVALAYGDTITMTDLSDPLQQQTTLPAAGGKSLLKDSEKQLIEQ 375 Query: 652 VLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 LKE G AA+RLG+ R L ++KRLG++ Sbjct: 376 ALKEAKG---NKTQAAERLGMSREGLRKKLKRLGME 408 >UniRef50_D2MK88 Formate hydrogenlyase transcriptional activator n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MK88_9BACT Length = 447 Score = 265 bits (677), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 133/250 (53%), Positives = 169/250 (67%), Gaps = 1/250 (0%) Query: 378 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMN 437 + +IIGRS + +L+Q++ VA + + VLI GETGTGKELIA+A+H S R+ MV +N Sbjct: 118 YADIIGRSPQVVEILRQIDKVANTTAKVLICGETGTGKELIAQALHENSDRSMNEMVSVN 177 Query: 438 CAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVL 497 CAA+P LLES LFGHERGAFT A Q IG+FE A+ S+LFLDE+GDMPL LQ KLLR + Sbjct: 178 CAAIPDLLLESQLFGHERGAFTDAKTQHIGKFERANNSTLFLDEIGDMPLSLQVKLLRAV 237 Query: 498 QEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPE 557 + E ER+G K I D+R+IAAT+ L + V FR DLYYRLN I LPPLRERPE Sbjct: 238 ETGEIERIGGTKPIPVDIRIIAATHCKLVQSVESGSFRQDLYYRLNTVSIALPPLRERPE 297 Query: 558 DIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGN-V 616 DI +LAK F K + + + + ET L N WPGN+RELEN + A+L GN + Sbjct: 298 DIRVLAKHFVEKHSGTFAKRVTKVIPETFTCLQNYPWPGNIRELENALIHAILFAEGNGI 357 Query: 617 LQLSLPDIVL 626 L LP+ +L Sbjct: 358 LPTDLPEEIL 367 >UniRef50_C1ZB08 Sigma-54 interacting regulator n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZB08_PLALI Length = 1098 Score = 265 bits (677), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 166/453 (36%), Positives = 251/453 (55%), Gaps = 28/453 (6%) Query: 188 RILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQH 247 ++L + AV D + L +A + +I LR R + + + Sbjct: 481 KVLQRMNRAVGQLADAESLAQRMAGSCQDVIQAERAAIYLREGRSTNFRLIAAEGVWPNV 540 Query: 248 PAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMS 307 + D TL + + + RD + P + L D I L + +S Sbjct: 541 SMQISTSADFVMTLA----AATTLQAVPAASRDSMNPVQSFLRDLQAELIHALEVEGELS 596 Query: 308 GDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERL---VD-- 362 G +LG + V++ ++ L + + +A+ A ++++ RL E L VD Sbjct: 597 GFVVLG----PRQTNGVYSAEDITFLTAMGQITGVALHCAKVHKDLSRLNEELRLKVDRI 652 Query: 363 -----ENLALTEQLNNVD--------SEF--GEIIGRSEAMYSVLKQVEMVAQSDSTVLI 407 + L L ++N +EF G I G S+A+ VL+ V A SDS+VLI Sbjct: 653 EQQKQQILMLQAEINESQEPESPAPVTEFNRGMIRGSSQALMEVLEVVRKAAASDSSVLI 712 Query: 408 LGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIG 467 GE+GTGKEL+A+AIH S R + +V ++CAA+ GLLES+LFGH +G+FTGA A + G Sbjct: 713 TGESGTGKELLAQAIHANSPRRDGPLVIVHCAALSTGLLESELFGHVKGSFTGAYADKPG 772 Query: 468 RFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKK 527 RFELA+ +LFLDE+G++PLE Q KLLRVLQ++ FER+GS++ ++ DVR++AAT+++L++ Sbjct: 773 RFELANGGTLFLDEIGEIPLETQVKLLRVLQQRTFERVGSSETLRCDVRVVAATHKNLEQ 832 Query: 528 MVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLR 587 + D FR DLYYRLNV I LP LRER +D+ L + F + A + G+ + I L Sbjct: 833 AIRDSRFREDLYYRLNVVHIALPALRERKDDLYELFRHFLKQAANKTGKRVFRIDESALA 892 Query: 588 TLSNMEWPGNVRELENVIERAVLLTRGNVLQLS 620 L +WPGN+RELENVIERAV+L+ N + L+ Sbjct: 893 ALLAYQWPGNIRELENVIERAVVLSESNTVTLA 925 >UniRef50_B8DLN3 Two component, sigma54 specific, transcriptional regulator, Fis family n=12 Tax=Deltaproteobacteria RepID=B8DLN3_DESVM Length = 491 Score = 265 bits (677), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 142/291 (48%), Positives = 192/291 (65%), Gaps = 10/291 (3%) Query: 338 ERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEM 397 E+V IA AL Y ++ R EN AL + L ++ E+ GRS M ++ Q+ Sbjct: 108 EKVLIAAQRALEYGDLRR-------ENEALRDSLPTAHAD--EMNGRSPVMETLRGQIAR 158 Query: 398 VAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGA 457 VA +D+ VLI GE GTGKEL ARAIH S R +R +V +NCAA+P L+ES+LFGHE+GA Sbjct: 159 VAPTDAWVLITGENGTGKELAARAIHAGSRRADRPLVAVNCAAIPEELIESELFGHEKGA 218 Query: 458 FTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRL 517 FTGA + + G+FE+A K +LFLDE+GDM L+ Q K+LR+LQEQ+FER+G ++ ++ DVR+ Sbjct: 219 FTGADSAKAGKFEMAHKGTLFLDEIGDMSLKTQAKILRILQEQQFERVGGHRTMRVDVRV 278 Query: 518 IAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRN 577 IAATN++L+ +A FR DLYYRL VFP+ LPPLRER D+PLL F ++AR G Sbjct: 279 IAATNKNLEDEIAAGTFREDLYYRLRVFPLVLPPLREREGDVPLLIDLFAQRLARDYGVR 338 Query: 578 IDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRG-NVLQLSLPDIVLP 627 + + L+ WPGNVREL N +ER ++L G V + LP LP Sbjct: 339 PATFAPDAQEALARYPWPGNVRELRNFVERMLILHAGLEVTRSMLPPEFLP 389 >UniRef50_B2S3B3 Response regulatory protein n=28 Tax=Spirochaetales RepID=B2S3B3_TREPS Length = 458 Score = 265 bits (676), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 155/355 (43%), Positives = 218/355 (61%), Gaps = 18/355 (5%) Query: 325 FTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGR 384 F T L+L R+++ V AL +E L+ ++ L +Q+ N S F I+G Sbjct: 100 FLTKPLDL-----NRLSLLVRRALQNRE-------LIVQHRELIKQIGNRTS-FENIVGE 146 Query: 385 SEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 444 S AM V V+ A S ++VLI GE+G GKELIA AIHNLS R + ++K++CA+ G Sbjct: 147 SPAMNKVFDMVKKAAASKASVLITGESGVGKELIANAIHNLSPRKAKPLIKVHCASFAEG 206 Query: 445 LLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFER 504 +LES+LFGHERGAFTGA + GRFELA + S+FLDE+G++ + +Q KLLRVLQE+ FER Sbjct: 207 VLESELFGHERGAFTGAVNRMKGRFELAHEGSMFLDEIGEVSMAVQIKLLRVLQERSFER 266 Query: 505 LGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAK 564 +G + I+ DVR+I+ATNR+L + + FR DLYYRLNV IH+P LRER ED+PLL Sbjct: 267 VGGRETIKVDVRVISATNRNLLEEIKRNLFREDLYYRLNVVHIHVPALRERKEDLPLLIA 326 Query: 565 AFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQL-SLPD 623 F +IA G+ I SI + L +WPGN+R+L N IE AV+++ G V+ + L + Sbjct: 327 TFLKEIAEENGKKITSIDPQAQSALHAYDWPGNIRQLRNCIESAVIMSSGPVIHIEDLSE 386 Query: 624 IVLPEPETPPAATVVALEGED-EYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTL 677 + ET + + ED E ++I++ L+ G A LG+ R TL Sbjct: 387 PIRSLGETSSIRIPIGVSMEDAEKEIILQTLEAQKG---NKSKTADVLGIGRKTL 438 >UniRef50_Q3A2M3 Two component, sigma54 specific, transcriptional regulator, Fis family n=16 Tax=Bacteria RepID=Q3A2M3_PELCD Length = 492 Score = 265 bits (676), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 156/360 (43%), Positives = 218/360 (60%), Gaps = 24/360 (6%) Query: 338 ERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEM 397 E + + V+NAL ++ R ENL L ++L S F IIG+S+ M V +E Sbjct: 133 EEIRLVVENALERMDLRR-------ENLQLKKELGQRFS-FANIIGKSKVMQGVYDLIEK 184 Query: 398 VAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGA 457 V+ S VLI GE+GTGKEL+ARAIH S R++R V + C A+P LLES+LFGHE+GA Sbjct: 185 VSASKVNVLITGESGTGKELVARAIHYNSDRHDRPFVAIYCGAIPENLLESELFGHEKGA 244 Query: 458 FTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRL 517 FTGA Q+ G FE+AD +LFLDE+ ++P +Q KLLRV+QE EF ++G + ++ DVRL Sbjct: 245 FTGAVQQKQGLFEVADGGTLFLDEIAELPPMMQVKLLRVIQEHEFRKVGGTRDLKVDVRL 304 Query: 518 IAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRN 577 +AATN+DL + V + +FR DLYYRLNV + LPPLR+R EDIPLL F K+ Sbjct: 305 VAATNKDLAQAVTEDQFREDLYYRLNVIQVGLPPLRDRREDIPLLVSHFLQKLTPGFS-- 362 Query: 578 IDSIPAETLRTLSNMEWPGNVRELENVIERAVLL-TRGNVLQLSLPDIVLPEPETPPAA- 635 +IP +R + WPGN+RELEN +ER V+L +G + + SLP +L T Sbjct: 363 -TTIPDGVMRRFLDYHWPGNIRELENTVERCVVLGGKGEITEDSLPPHMLCISGTGDQQL 421 Query: 636 TVVALEGED--------EYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 T + EG D E ++++ L T GV K AA+ L + ++ R+ + GI+ Sbjct: 422 TELPEEGLDLDDYLGAIEKDILLKALDRTGGV---RKRAAELLHITFRSIRYRLAKFGIE 478 >UniRef50_D0LQ47 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LQ47_HALO1 Length = 665 Score = 264 bits (675), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 137/268 (51%), Positives = 178/268 (66%), Gaps = 6/268 (2%) Query: 360 LVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIA 419 L EN L+EQL +G S A +VL+ V V S++TVL+ GE+G+GKE++A Sbjct: 295 LAVENRELSEQLGGR-----AFVGSSPAAETVLRFVSKVGPSEATVLLTGESGSGKEMVA 349 Query: 420 RAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFL 479 RAIH+ S R + + +NCAA+ L+ES+LFGHERGAFTGAS ++ GRFELADK +LFL Sbjct: 350 RAIHDASRRASAPFIAINCAALTETLIESELFGHERGAFTGASERKAGRFELADKGTLFL 409 Query: 480 DEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLY 539 DEVG++PL Q K LRVL+EQ FER+G + I DVR++AATNRDL MV FR DLY Sbjct: 410 DEVGELPLSCQTKFLRVLEEQVFERVGGGRTIAVDVRVVAATNRDLPSMVRQGRFREDLY 469 Query: 540 YRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVR 599 YRL+V +PPLR R DIP+LA+ F + +++ R + E L L+ WPGNVR Sbjct: 470 YRLSVIHTVVPPLRARTSDIPVLAEHFLARFRKQVARRVAGFSPEALAALTRHPWPGNVR 529 Query: 600 ELENVIERAVLLTRGN-VLQLSLPDIVL 626 EL N +ERAV+L G +L LP VL Sbjct: 530 ELRNAVERAVVLGEGPWILPAHLPPDVL 557 >UniRef50_A1ATK4 Two component, sigma54 specific, transcriptional regulator, Fis family n=12 Tax=Deltaproteobacteria RepID=A1ATK4_PELPD Length = 480 Score = 264 bits (675), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 139/264 (52%), Positives = 182/264 (68%), Gaps = 4/264 (1%) Query: 381 IIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAA 440 IIG S AM S+ K + VA SD T+LI GE+GTGKE++ARAIH SGR + V +NCAA Sbjct: 145 IIGNSAAMQSIYKTIGKVADSDITILIQGESGTGKEMVARAIHFNSGRLGKPFVAINCAA 204 Query: 441 MPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQ 500 +P LLES+LFG ERGAFTGAS ++ G+FE A++ ++FLDE+GDMPL+LQ K+LRVLQE Sbjct: 205 IPRDLLESELFGSERGAFTGASERKQGKFEQANQGTIFLDEIGDMPLDLQAKILRVLQEH 264 Query: 501 EFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIP 560 E R+G + I +VR++AATN++L++ V REFR DLYYRLNV PI L PLRER +DIP Sbjct: 265 EVTRVGGTQSIAVNVRIVAATNQELQERVRQREFREDLYYRLNVVPITLAPLRERRDDIP 324 Query: 561 LLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLS 620 L + F + L + E + LS WPGNVRELEN I+RAV+L+ +L + Sbjct: 325 ELVRYFLDRTCTELSIPPKQLTPEAMALLSRHSWPGNVRELENTIKRAVILSNDPMLTEA 384 Query: 621 LPDIVLPEPE----TPPAATVVAL 640 D + PE E TP A++ A+ Sbjct: 385 DFDGLQPEGEETAMTPQDASLEAI 408 >UniRef50_UPI00016C4DD7 sigma-54 dependent transcriptional regulator/response regulator n=2 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C4DD7 Length = 475 Score = 264 bits (675), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 160/351 (45%), Positives = 214/351 (60%), Gaps = 24/351 (6%) Query: 356 LKER-LVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTG 414 L++R L DE AL +L + F ++ RS M + + + VA + STVLI GETGTG Sbjct: 124 LRDRALQDEVAALRRELGERHT-FQNVLSRSPKMVDLFELIGHVAGTASTVLIRGETGTG 182 Query: 415 KELIARAIHNLSGRNNR--RMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELA 472 KE IARAIH S N R V +NC A+ LLES+LFGHE+G++TGA +RIGRFELA Sbjct: 183 KEQIARAIHQASA-NYRTGEFVAVNCGALNENLLESELFGHEKGSYTGADRKRIGRFELA 241 Query: 473 DKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADR 532 K +LFLDE+GD+P+ +Q KLLRVLQE+ FER+G + I+ DVR++AAT++D++K+V D Sbjct: 242 HKGTLFLDEIGDVPMSMQVKLLRVLQERRFERVGGAEPIEIDVRVVAATHQDMEKLVKDG 301 Query: 533 EFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNM 592 +FR DLYYRLNV I +PPLRER EDIP+L F K R+G+ +I E L L+ Sbjct: 302 KFREDLYYRLNVVRIDIPPLRERTEDIPVLVSHFCQKFV-RVGQKPPTISPEALDLLTKC 360 Query: 593 EWPGNVRELENVIERAVLLTRGNVLQLS-LPDIVLPEPETPPAAT--------------V 637 WPGNVR+LEN IERA + R V++ LP V PE+ A + Sbjct: 361 PWPGNVRQLENAIERACVTARDGVIRTKDLPPEVGRRPESSAAGKHPFHVDLNRKLPDQL 420 Query: 638 VALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDK 688 L E + I R LK + G V A+ GL R ++ ++ + IDK Sbjct: 421 SELTAAFEERYIRRALKRSRGHVG---KCAKITGLSRRSITDKIAQYKIDK 468 >UniRef50_C9XRA6 Probable sigma54-dependent transcriptional regulator n=7 Tax=Clostridium difficile RepID=C9XRA6_CLODC Length = 605 Score = 264 bits (675), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 126/233 (54%), Positives = 173/233 (74%), Gaps = 1/233 (0%) Query: 375 DSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMV 434 +S+ IIG SEAM V ++ + +A+S+STVLI GE+GTGKELIARAIH R N+ + Sbjct: 270 NSDIESIIGNSEAMLKVKERTKKLAKSNSTVLITGESGTGKELIARAIHAEGSRWNKPFI 329 Query: 435 KMNCAAMPAGLLESDLFGHERGAFTGASAQ-RIGRFELADKSSLFLDEVGDMPLELQPKL 493 +NCAA+P LLES+LFG+ +GAF+GAS+ ++G+FELA++ +FLDE+GD+ + LQ KL Sbjct: 330 AINCAAIPENLLESELFGYIKGAFSGASSGGKVGKFELANEGVIFLDEIGDLSMPLQAKL 389 Query: 494 LRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLR 553 LRVLQE++F R+GSNK+I D+R+IAATN++L K+V + +FR DLYYRLNV PI+LPPLR Sbjct: 390 LRVLQERKFARIGSNKLIDLDIRVIAATNKNLLKLVNEGKFRDDLYYRLNVIPINLPPLR 449 Query: 554 ERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIE 606 ER +DI + F K + LG ++ I + L N WPGN+RELEN +E Sbjct: 450 ERKDDIEAIMMKFASKYSLELGIQLNKIEENVMNMLINYNWPGNIRELENAVE 502 >UniRef50_C1A568 Putative NtrC family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A568_GEMAT Length = 526 Score = 264 bits (675), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 144/319 (45%), Positives = 201/319 (63%), Gaps = 22/319 (6%) Query: 338 ERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEM 397 +++ +AVD AL + + R E L E + Q N +IIG S A+ +L+ V M Sbjct: 146 QQLELAVDQALEFVRLRRENETLRKEVM----QFRNER----QIIGDSPAIRRILQTVSM 197 Query: 398 VAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGA 457 A + +TVL+ GE+GTGKEL ARAIH+ S R ++ +K+NCAA+P GL+ES LFGHE+GA Sbjct: 198 AAPTRATVLLQGESGTGKELFARAIHDQSERRDKPFIKLNCAALPEGLVESALFGHEKGA 257 Query: 458 FTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRL 517 FTGA + G FE A++ +L LDE+ +M L+LQ KLLRVLQEQEFER+G I+ DVR+ Sbjct: 258 FTGAIKRVEGAFERANRGTLLLDEISEMRLDLQAKLLRVLQEQEFERVGGTSPIKVDVRI 317 Query: 518 IAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRN 577 +A TNRDL FR DLYYRL+ P+ +PPLR+R ED+P+LA F + A +G+ Sbjct: 318 VATTNRDLAMEADHGTFRQDLYYRLSTIPVLIPPLRDRAEDVPVLALRFAMRTAAEIGKK 377 Query: 578 IDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQ--------------LSLPD 623 I+ + + L +L WPGN+REL++VIERAV+LT ++Q L P+ Sbjct: 378 IEGLSQDALESLQQYPWPGNIRELQHVIERAVILTPDPIIQPHCLEGTRFGLAHSLGAPN 437 Query: 624 IVLPEPETPPAATVVALEG 642 + TP A V+A+ G Sbjct: 438 MRPRAIATPGAQPVLAVSG 456 >UniRef50_A5GBB3 Two component, sigma-54 specific, transcriptional regulator, Fis family n=6 Tax=Desulfuromonadales RepID=A5GBB3_GEOUR Length = 500 Score = 264 bits (675), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 160/407 (39%), Positives = 236/407 (57%), Gaps = 45/407 (11%) Query: 309 DTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALT 368 D+ + LKL E+ + N+ LR + +D A ++R + E L Sbjct: 88 DSAVRALKLG-AEDYIGKPFNMEALRHV-------IDKAF--------EKRQLREKLDFF 131 Query: 369 EQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDS-TVLILGETGTGKELIARAIHNLSG 427 + +E +++G S +M ++ K +++ A +D+ TVLILGE+GTGKEL+ARAIHN S Sbjct: 132 RKELRKKTEHDKLVGNSASMVNLFKMIKVCADTDAKTVLILGESGTGKELVARAIHNHSA 191 Query: 428 RNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPL 487 R ++NCAA+P LLES+LFGHE+GA+T AS +R G FELA+ ++FLDE+GDMP Sbjct: 192 RAEAPFAEVNCAAIPETLLESELFGHEKGAYTDASKRRKGIFELAEGGTVFLDEIGDMPF 251 Query: 488 ELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPI 547 +Q K+L+V++ + F RLG+ + IQ DVR+IAAT++DL MV +R FR DL+YRLNV I Sbjct: 252 SMQAKVLKVIETKRFRRLGAEEDIQADVRIIAATHQDLPAMVKERRFRGDLFYRLNVMNI 311 Query: 548 HLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIER 607 LPPLRER +DIP L + F ++ GR ++ + ET+ L+ WPGNVREL N IER Sbjct: 312 PLPPLRERTDDIPSLVQYFIERLNEEYGRRVEGVSPETMAYLTGYGWPGNVRELRNAIER 371 Query: 608 AVLLTRGNVLQ-LSLPDIVLPEPETPPAATV-----------------------VALEGE 643 ++L +L + L + + ET ++ ++LE E Sbjct: 372 TMMLEHSRILTPVFLNAEIKQQYETAQNKSLHVDSHASAQHSFARGHITIPTGGISLE-E 430 Query: 644 DEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSA 690 E QLI L+ + G AA+ L + R TL RMK+ G+ +S+ Sbjct: 431 LERQLIRMGLEISGG---NQTKAAKYLKMSRDTLRYRMKKFGMSESS 474 >UniRef50_D2R8T8 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Planctomycetaceae RepID=D2R8T8_9PLAN Length = 457 Score = 264 bits (675), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 159/362 (43%), Positives = 212/362 (58%), Gaps = 24/362 (6%) Query: 336 IAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFG--EIIGRSEAMYSVLK 393 I E + ++++ AL+ + ++V+EN+ L QL D FG I+G M V Sbjct: 107 IDEELLLSIERALS-------QRKVVEENVQLKAQL---DLRFGLENIVGHEHRMQKVFD 156 Query: 394 QVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGH 453 VE +A + +TVLI GE+GTGK L+ARAIH R ++ V++ C AMP LLES+LFGH Sbjct: 157 MVERIADTRATVLITGESGTGKSLLARAIHRRGSRRDQAFVEVACGAMPESLLESELFGH 216 Query: 454 ERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQT 513 G+FTGA+ +IG+F ADK ++FLDE+G LQ KLLRVLQE EFE +GS K + Sbjct: 217 AAGSFTGATGDKIGKFTQADKGTIFLDEIGTASASLQVKLLRVLQELEFEPVGSTKTQRV 276 Query: 514 DVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARR 573 D R+I ATN L++ VA FR DLYYR+NV I +PPLRER DIPLLA F + Sbjct: 277 DTRVILATNEKLEQAVAAGRFRQDLYYRVNVINIEVPPLRERIADIPLLANHFLQRTCEE 336 Query: 574 LGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQ-------LSLPDIVL 626 G+ + + + WPGNVREL+NV+ERAVLL RG +Q ++ IV Sbjct: 337 SGKRSQGFSDDVITAMQRYNWPGNVRELQNVVERAVLLGRGPKVQVEDLTPAIASGQIVS 396 Query: 627 PEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 +P A ALE E +I+ VL+ A LG+ RTTL +MKRLG+ Sbjct: 397 IDP-VGNKALKEALESP-ERAIILDVLEMHQW---NRNATADALGINRTTLYKKMKRLGL 451 Query: 687 DK 688 DK Sbjct: 452 DK 453 >UniRef50_Q2IQM1 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Myxococcales RepID=Q2IQM1_ANADE Length = 485 Score = 264 bits (675), Expect = 9e-69, Method: Compositional matrix adjust. Identities = 147/309 (47%), Positives = 203/309 (65%), Gaps = 7/309 (2%) Query: 378 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMN 437 F I+G + +++V + V+ A + +TVLILGE+GTGKEL A+A+H S R ++ +K+N Sbjct: 150 FHNIVGDAPELHAVYEVVKRAAPTRATVLILGESGTGKELFAQALHEESPRADKAFIKVN 209 Query: 438 CAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVL 497 CAA+ LLES+LFGHE+GAFTGA ++ GRFELAD +LFLDE+GD+ LQ KLLRVL Sbjct: 210 CAALSETLLESELFGHEKGAFTGAIGRKEGRFELADGGTLFLDEIGDISPALQIKLLRVL 269 Query: 498 QEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPE 557 Q++EFER+G + ++ DVRL+AATNRDL V + FR DLYYRLNV + LPPLR+R Sbjct: 270 QQREFERVGGTQTLKVDVRLVAATNRDLAAEVKNGRFREDLYYRLNVVAVTLPPLRQRKG 329 Query: 558 DIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVL 617 DIP L F K ++ G++I + TL + + +WPGNVRELENV+ERAV+L +G+ L Sbjct: 330 DIPALVSHFIDKYSKAYGKDIRGLAPGTLNAVLSHDWPGNVRELENVVERAVVLCKGSEL 389 Query: 618 QLS--LPDIVLPEP-ETPPAATVV-ALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLK 673 P + P P E P A + A E E + I+R L+ G + AA+ LG+ Sbjct: 390 TADDLPPTLRGPRPRERAPGALIPGATLYEIEREAILRTLEMVGGSTS---RAAEILGIS 446 Query: 674 RTTLLSRMK 682 + R+K Sbjct: 447 VRKIQYRLK 455 >UniRef50_A6LVD4 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Clostridium beijerinckii NCIMB 8052 RepID=A6LVD4_CLOB8 Length = 689 Score = 264 bits (674), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 153/409 (37%), Positives = 240/409 (58%), Gaps = 31/409 (7%) Query: 305 LMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERL---- 360 L +G++++G + + E V +N+N + I + V E+ +L E+L Sbjct: 286 LKTGESIIGAI--SYKENGVIIVSNVNPI-VIDGEITGVVSIVKNVTEVQKLSEKLTQVS 342 Query: 361 -----VDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGK 415 ++E L T++ DS F + IG S + L A++D+TVLI GE+GTGK Sbjct: 343 AKADYLEEELMRTKK---PDSAFSKYIGHSGKILDALATTLKAAKTDTTVLIRGESGTGK 399 Query: 416 ELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKS 475 ELIA IH S + +++NCAA+P LLES+LFG+E+GAFTGA +++G+FELA Sbjct: 400 ELIAEGIHFSSKNSKGPFIRVNCAAIPQNLLESELFGYEKGAFTGAIKRKLGKFELAQNG 459 Query: 476 SLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFR 535 ++ LDE+G+M +Q K+LRV+QE+EF+R+G + I+ +VR+IAAT+R+L++MV EFR Sbjct: 460 TILLDEIGEMDKSMQAKVLRVIQEKEFQRIGGEETIKINVRIIAATHRNLEEMVKSMEFR 519 Query: 536 SDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWP 595 DLYYRLNV PI LPPLRER +DI L + F KI +R+ + I + + + +L +WP Sbjct: 520 EDLYYRLNVIPIFLPPLRERKQDIAPLLEHFIDKIGKRINKRITVVTNDAMESLLEYKWP 579 Query: 596 GNVRELENVIERAVLLTRGNVLQLS-LPDIVLPEPETPPAATVVALEGEDEYQLIVRV-- 652 GN+RELEN++ER + L V++LS LP + + T A + + +E +++ Sbjct: 580 GNIRELENLVERIMALNETEVIELSDLPAYMRKDINTVKNA--IKSKNNNEIDMLIETDE 637 Query: 653 ---LKETNGVV--------AGPKGAAQRLGLKRTTLLSRMKRLGIDKSA 690 LKE ++ A + LGL T+ ++ ++ GI+K Sbjct: 638 ILPLKEYEKIIIEKALKKYGSYNAAGKALGLTHKTVAAKARQYGIEKKV 686 >UniRef50_C8X1R7 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X1R7_DESRD Length = 471 Score = 264 bits (674), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 150/320 (46%), Positives = 197/320 (61%), Gaps = 15/320 (4%) Query: 378 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMN 437 G I+G+SE M V +V A S STVLI GE+GTGKELIARAIH S + ++ V +N Sbjct: 149 LGNIMGKSEVMQEVFSRVRAAAASRSTVLIQGESGTGKELIARAIHYNSDQADQPFVTVN 208 Query: 438 CAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVL 497 C+A+ LLES+LFGH +GAFTGA R GRFE A + S+FLDE+G++ +Q KLLRVL Sbjct: 209 CSALTETLLESELFGHVKGAFTGAVRDRAGRFEEAHRGSIFLDEIGELSQTIQVKLLRVL 268 Query: 498 QEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPE 557 QE+E ER+G ++ D+R+I AT+RDL +++A FR DLYYRL VFPI LPPLR+R E Sbjct: 269 QEREVERVGDSQTRTIDIRVIVATHRDLNELLAQGVFRQDLYYRLKVFPITLPPLRQRRE 328 Query: 558 DIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVL 617 D+PLL F K G+ + + E +R + WPGNVRELEN IE A +LT G + Sbjct: 329 DLPLLVNHFIAKQNEATGKRVTGLAPEAMRLVFEYHWPGNVRELENAIEHAFVLTSGEQI 388 Query: 618 QLS-LPDIVL---PEPETPPAATVVALEGE-------DEYQLIVRVLKETNGVVAGPKGA 666 Q++ LP ++ P PE A V G D QL+ L E N Sbjct: 389 QVNDLPAEIITPRPSPERAREAGVPRTAGSRQHHEQPDREQLL--ALLEANQ--WNKAAV 444 Query: 667 AQRLGLKRTTLLSRMKRLGI 686 A++LG+ RT + MK+ GI Sbjct: 445 ARQLGVSRTAVWKYMKKWGI 464 >UniRef50_Q306N7 PilR2 n=17 Tax=Deltaproteobacteria RepID=Q306N7_MYXXD Length = 474 Score = 264 bits (674), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 158/349 (45%), Positives = 217/349 (62%), Gaps = 16/349 (4%) Query: 357 KERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKE 416 +ERLV EN L +Q + + G I+G S A++++L+QV +A D+TVLI GE+GTGKE Sbjct: 122 RERLVRENRRL-KQASLPSTPGGHILGESPALHALLRQVARLAPVDTTVLISGESGTGKE 180 Query: 417 LIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSS 476 LIAR +H S R V +NC A+P+GL+ES+LFGH +GAFT A + G F AD + Sbjct: 181 LIARELHVRSPRAPMSFVAVNCGAIPSGLIESELFGHAKGAFTDARTAKRGLFAEADGGT 240 Query: 477 LFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRS 536 LFLDEVG++PL Q KLLRVLQE E +G N++ + +VR++AAT RDL ++VA +FR Sbjct: 241 LFLDEVGELPLAAQVKLLRVLQEGEIRPVGENRVEKVNVRVVAATLRDLSRLVAKGDFRE 300 Query: 537 DLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRN--IDSIPAETLRTLSNMEW 594 DLYYRLNV + +PPLRER ED+PLLA+AF + R L R + + AE L + W Sbjct: 301 DLYYRLNVVNLRVPPLRERREDVPLLARAFIARFNRELNREPPVAGLTAEAEALLKSYAW 360 Query: 595 PGNVRELENVIERAVLLT-RGNVLQLSLPDIVL------PEPETPPAATVVALEGEDEYQ 647 PGNVRELEN +ERAVLL ++L +LP+ + P E P V+ G+ + Sbjct: 361 PGNVRELENAMERAVLLADEPHILPANLPERLWAASPPGPHGEKPHGDPVLQGGGDLSLK 420 Query: 648 LIVRVLKET--NGVVAGPKG----AAQRLGLKRTTLLSRMKRLGIDKSA 690 +R L+E+ + KG AA+ L + LL ++K GID A Sbjct: 421 RAIRELEESYIRAALRKTKGNRTRAAELLDISHRALLYKIKEYGIDPDA 469 >UniRef50_B8GTB8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GTB8_THISH Length = 453 Score = 263 bits (673), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 152/352 (43%), Positives = 217/352 (61%), Gaps = 21/352 (5%) Query: 344 VDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDS 403 V+ AL++ + R EN+ L E+ N V +E IIGRS AM V + ++ A D Sbjct: 116 VERALSHWNLSR-------ENMRLREE-NKVFAEGDVIIGRSAAMDEVHRLIDAAAAYDC 167 Query: 404 TVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASA 463 +VLI GE+GTGKEL+AR IH S R + V +NCAA+P ++ES+LFG+++GAFTGA Sbjct: 168 SVLITGESGTGKELVARQIHLKSPRRDNSFVAINCAAIPEQIIESELFGYQKGAFTGAER 227 Query: 464 QRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNR 523 + G FE A+ ++FLDEV + L LQ KLLRVLQ+ F RLG + +VR++AATNR Sbjct: 228 AKPGLFETANGGTIFLDEVNNASLSLQAKLLRVLQDATFYRLGDTEPRHVNVRVLAATNR 287 Query: 524 DLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPA 583 D+ ++A FR DLYYRL V IH+P LR+R +D+PLLA F K A+R + +D + Sbjct: 288 DVPGLIAQETFREDLYYRLRVIEIHIPALRDRRDDVPLLANYFISKYAKRFNKPVDGMST 347 Query: 584 ETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEG- 642 + L L +WPGNVRELENVI+RA++L +G V+ ++ PE +V A++ Sbjct: 348 QVLGALMRHDWPGNVRELENVIQRALILCQGKVID---EGVLPPEISRGTELSVRAIDHM 404 Query: 643 ------EDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDK 688 E E I + L+ETNG A A+ LG+ ++TL ++KR I++ Sbjct: 405 QPQTLEEVEVYFIRKTLRETNGDRA---LCAEILGIDKSTLWRKIKRYSIEE 453 >UniRef50_B5YHK7 SasR n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YHK7_THEYD Length = 462 Score = 263 bits (673), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 152/353 (43%), Positives = 216/353 (61%), Gaps = 35/353 (9%) Query: 353 IHRLKER--LVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGE 410 I + +ER L+ ENL L ++L G IIG+S M VL V+ +++TVLI GE Sbjct: 113 IRKAEERMNLIKENLMLRKELYEKFKMDG-IIGKSRKMLQVLDIVKKATPTNATVLIYGE 171 Query: 411 TGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFE 470 +GTGKELIARAIH S R ++ + +NCAA+P L+ES+LFG+E GAFTGA+ ++IG E Sbjct: 172 SGTGKELIARAIHYNSPRKDKPFIAINCAAIPDTLIESELFGYEPGAFTGANTRKIGLIE 231 Query: 471 LADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVA 530 ADK +LFLDE+ ++PL Q KLLRVLQ++E ++GS + DVR+IAATN++L + V Sbjct: 232 SADKGTLFLDEIAEIPLSTQSKLLRVLQDKEVRKIGSKDTNKVDVRIIAATNKNLSEQVE 291 Query: 531 DREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLS 590 +FR DLYYRL V + +PPLRER EDIP L F K ++ G+ ++ I + L L Sbjct: 292 KNKFREDLYYRLKVITVEIPPLRERKEDIPDLVHFFIEKYSKEFGKRVNGIEEKALEALL 351 Query: 591 NMEWPGNVRELENVIERAVLLTRGNVLQL-------------SLPDIVLPEPETPPAATV 637 N WPGN+RELE+VIERA+++ + + +L DI +P+ Sbjct: 352 NYSWPGNIRELESVIERAIIICEKDKITFNDIQDELRVITPKNLFDIDIPD--------- 402 Query: 638 VALEG----EDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 EG E E +LI + L ++N V+A AA+ LG+ T R+K+ G+ Sbjct: 403 ---EGINYEELEKELIKKALIKSNFVIA---KAARLLGMSYDTFWYRLKKFGL 449 >UniRef50_C8QYP0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QYP0_9DELT Length = 506 Score = 263 bits (672), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 137/269 (50%), Positives = 179/269 (66%), Gaps = 11/269 (4%) Query: 381 IIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAA 440 +IGR +L++ VA S +TVL+LGE+GTGKE+ AR IH++S R V +NCAA Sbjct: 152 VIGRDRHFLRLLERARTVASSKATVLVLGESGTGKEVFARFIHHVSDRKAGPFVALNCAA 211 Query: 441 MPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQ 500 +P GLLES+LFGHE+GAFTGA + G+FELA +L LDE+G++PL LQ KLLRVLQE+ Sbjct: 212 LPEGLLESELFGHEKGAFTGAVMAKKGKFELAHGGTLLLDEIGEVPLHLQAKLLRVLQEE 271 Query: 501 EFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIP 560 E +RLG + ++ DV ++A TNRDL + V D FR DLYYRLNV PI LP LRERP+DI Sbjct: 272 EVDRLGGKEPVKVDVHVVATTNRDLAEAVKDGTFRQDLYYRLNVIPIRLPSLRERPDDIF 331 Query: 561 LLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQL- 619 LLA F K +RR + + + A + + +WPGNVRE+EN++ER VLL+ G+ L+L Sbjct: 332 LLADFFIEKHSRRYNKPLKKLSAAARQRFLDYDWPGNVREMENLLERGVLLSNGDELELW 391 Query: 620 -----SLP-----DIVLPEPETPPAATVV 638 LP LPEP P A V Sbjct: 392 DFWDDELPPEPAASAELPEPSGPADAEPV 420 >UniRef50_Q1JW16 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JW16_DESAC Length = 459 Score = 263 bits (672), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 145/339 (42%), Positives = 202/339 (59%), Gaps = 28/339 (8%) Query: 378 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMN 437 F ++GRS AM V +++ + A SD+ V+I GETGTGKEL+ARAIH S R + +N Sbjct: 123 FHNLVGRSVAMQEVFRKIRLYAASDAAVVITGETGTGKELVARAIHEESERRLGPYIALN 182 Query: 438 CAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVL 497 C+A+ LLES+LFGHE+GAFTGA GRFE A+ SLFLDE+GDMPL Q +LLRVL Sbjct: 183 CSAISEDLLESELFGHEKGAFTGAIRSHRGRFERANGGSLFLDEIGDMPLHTQTRLLRVL 242 Query: 498 QEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPE 557 +E++ E +GS +++ DVR+I ATN L+K V FRSDLY+R++V IHLPPLRER + Sbjct: 243 EERQVEPVGSERVLPIDVRIICATNVGLEKAVGQNRFRSDLYHRISVLRIHLPPLRERRD 302 Query: 558 DIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVL 617 DIPLL K F + + GR+++ + E + L + WPGN+REL NV+ER + V+ Sbjct: 303 DIPLLVKRFLRRFSDSYGRSVERLTPEAMELLQSYLWPGNIRELRNVMERVFVENHAPVI 362 Query: 618 QLSL------------------------PDIVLP-EPETPPAATVVALEGEDEYQLIVRV 652 P ++ P +P PA + E Q I R Sbjct: 363 GARAFSEWVRERQNFVQNRWEESPPREEPALITPYDPAPRPATMTLKPAEELTEQAIRRA 422 Query: 653 LKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSAL 691 +E +G ++ AA+RLG+ R TL +K+L +D+ L Sbjct: 423 YEECDGNIS---AAARRLGIHRATLYRHLKKLNLDRDDL 458 >UniRef50_A5F6B9 Flagellar regulatory protein A n=61 Tax=Gammaproteobacteria RepID=A5F6B9_VIBC3 Length = 488 Score = 263 bits (671), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 146/359 (40%), Positives = 212/359 (59%), Gaps = 52/359 (14%) Query: 378 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMN 437 F ++G+S + V +E V+ +++ VLILGE+GTGKE++AR IH SGR N V +N Sbjct: 134 FRSLVGQSMGIQEVRHLIEQVSTTEANVLILGESGTGKEVVARNIHYHSGRRNGPFVPIN 193 Query: 438 CAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVL 497 C A+PA LLES+LFGHE+GAFTGA R GRFELA+ +LFLDE+GDMP+ +Q KLLRVL Sbjct: 194 CGAIPAELLESELFGHEKGAFTGAITARKGRFELAEGGTLFLDEIGDMPMSMQVKLLRVL 253 Query: 498 QEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPE 557 QE+ FER+G N I+ +VR+IAAT+R+L++M+ ++FR DLYYRLNVFPI +P LR+R + Sbjct: 254 QERCFERVGGNSTIKANVRVIAATHRNLEEMIDGQKFREDLYYRLNVFPIEMPALRDRID 313 Query: 558 DIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVL 617 DIPLL + ++ + I P + ++ +WPGNVREL N++ER V+L +++ Sbjct: 314 DIPLLLQELMTRMEAEGAQPICFTP-RAINSMMEHDWPGNVRELANLVERMVILYPNSLV 372 Query: 618 QLS------------------------------------------------LPDIVLPEP 629 ++ +PDI P+ Sbjct: 373 DVNHLPTKYRYSDIPEFQPEPSRFSSVEEQERDVLEGIFAEDFNFEEPQEFVPDIDAPQA 432 Query: 630 ETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDK 688 P + L + E LI + L+ GVVA AA LG++RTTL+ +M++ + + Sbjct: 433 LPPEGVNLKELLADLEVNLINQALEAQGGVVA---RAADMLGMRRTTLVEKMRKYNMQR 488 >UniRef50_A3ER00 Transcriptional regulator, NifA, Fis Family n=3 Tax=Leptospirillum RepID=A3ER00_9BACT Length = 553 Score = 263 bits (671), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 156/334 (46%), Positives = 208/334 (62%), Gaps = 30/334 (8%) Query: 382 IGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAM 441 IGRS M + + V +VA+S +TVLI+GE+GTGKE++A+AIH S RN R V++NCAA+ Sbjct: 203 IGRSRIMQQISESVHLVAKSRATVLIMGESGTGKEVVAKAIHFNSPRNRRPFVQINCAAI 262 Query: 442 PAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQE 501 P LLES+LFGHE+GAFTGA R G+FE A + +LFLDEVG++ +Q KLLRVLQE+ Sbjct: 263 PESLLESELFGHEKGAFTGAHVSRPGKFEQAHEGTLFLDEVGEISPAVQVKLLRVLQERV 322 Query: 502 FERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPL 561 ER+G K I DVR+IAATNR+L++ + +FR DLYYRLNV PI+LPPLR+R EDIPL Sbjct: 323 VERVGGTKTIPVDVRIIAATNRNLEEAIRKNQFREDLYYRLNVVPIYLPPLRQRKEDIPL 382 Query: 562 LAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQ--- 618 L F + + GR++ +I E + L +WPGNVRELEN +ER V++T+ + + Sbjct: 383 LVNHFLGRFNQENGRSM-TISPEAISALIEHDWPGNVRELENTMERLVVMTQADSIDITD 441 Query: 619 ----LSLPDIVLP---EPETPPAA------TVVALEGED----------EYQLIVRVLKE 655 L+L LP E E PA+ +L+GE E I+ VL Sbjct: 442 VRRTLALFPSTLPHRREVEEKPASRDSGKENGSSLKGESLLLPEAVSELERAKILDVLDR 501 Query: 656 TNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKS 689 T + AA LG+ L RM + GID S Sbjct: 502 TGWIKT---RAAALLGITPRQLGYRMMKYGIDPS 532 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P19323 Formate hydrogenlyase transcriptional activator ... 1039 0.0 UniRef50_P40734 Formate hydrogenlyase transcriptional activator ... 1005 0.0 UniRef50_Q2RXL4 Transcriptional regulator, NifA subfamily, Fis f... 828 0.0 UniRef50_A0KL56 Formate hydrogenlyase transcriptional activator ... 779 0.0 UniRef50_Q026M7 Transcriptional regulator, NifA subfamily, Fis F... 748 0.0 UniRef50_Q1ZUC7 Formate hydrogenlyase transcriptional activator ... 693 0.0 UniRef50_P71229 Hydrogenase-4 transcriptional activator n=45 Tax... 690 0.0 UniRef50_D0Z425 Formate hydrogenlyase transcriptional activator ... 681 0.0 UniRef50_A6EHC4 Sigma-54-dependent transcriptional regulator n=1... 622 e-176 UniRef50_A7HFP7 Transcriptional regulator, NifA subfamily, Fis F... 621 e-176 UniRef50_C1F0X6 Sigma-54 dependent transcriptional regulator, Fi... 613 e-174 UniRef50_Q1ZGP7 Formate hydrogen-lyase transcriptional activator... 607 e-172 UniRef50_P12626 Nitrogen fixation protein anfA n=11 Tax=Bacteria... 599 e-169 UniRef50_B3U4Q6 Nif-specific regulatory protein n=3 Tax=Bacteria... 599 e-169 UniRef50_C7PQF6 Transcriptional regulator, NifA subfamily, Fis F... 597 e-169 UniRef50_B3Q676 Transcriptional regulator, NifA subfamily, Fis F... 596 e-168 UniRef50_B0SC18 Transcriptional regulator n=7 Tax=Bacteria RepID... 595 e-168 UniRef50_P27713 Nif-specific regulatory protein n=3 Tax=Burkhold... 592 e-167 UniRef50_Q1NW39 Nif-specific regulatory protein n=2 Tax=Deltapro... 591 e-167 UniRef50_UPI00016C3921 transcriptional regulator, NifA subfamily... 588 e-166 UniRef50_C3X424 Transcriptional regulator containing GAF n=2 Tax... 587 e-166 UniRef50_B5JMU1 Sigma-54 interaction domain family n=1 Tax=Verru... 585 e-165 UniRef50_B3QSR6 Transcriptional regulator, NifA, Fis Family n=2 ... 584 e-165 UniRef50_B6WRE4 Putative uncharacterized protein n=1 Tax=Desulfo... 581 e-164 UniRef50_C8QWL5 Transcriptional regulator, NifA, Fis Family n=1 ... 581 e-164 UniRef50_C7PN78 Sigma54 specific transcriptional regulator, Fis ... 579 e-163 UniRef50_C0GSN4 Transcriptional regulator, NifA subfamily, Fis F... 579 e-163 UniRef50_D2QLL9 Transcriptional regulator, NifA subfamily, Fis F... 578 e-163 UniRef50_A4CKT3 Transcriptional regulator, NifA subfamily, Fis F... 574 e-162 UniRef50_Q7M8U4 TRANSCRIPTIONAL REGULATOR (NIFA FAMILY) n=1 Tax=... 572 e-161 UniRef50_B4U9N2 Transcriptional regulator, NifA subfamily, Fis F... 568 e-160 UniRef50_C6W352 Sigma54 specific transcriptional regulator, Fis ... 568 e-160 UniRef50_B8FJD2 Transcriptional regulator, NifA subfamily, Fis F... 567 e-160 UniRef50_B4DAQ1 Transcriptional regulator, NifA subfamily, Fis F... 567 e-160 UniRef50_A3ER00 Transcriptional regulator, NifA, Fis Family n=3 ... 567 e-160 UniRef50_B5EIR5 Transcriptional regulator, NifA subfamily, Fis F... 566 e-159 UniRef50_Q2LXW8 Nif-specific regulatory protein with sigma 54 in... 566 e-159 UniRef50_Q39TH4 Transcriptional regulator, NifA subfamily, Fis f... 565 e-159 UniRef50_C7LX45 Transcriptional regulator, NifA subfamily, Fis F... 564 e-159 UniRef50_A0LFR7 Transcriptional regulator, NifA subfamily, Fis F... 564 e-159 UniRef50_B8FLD5 Transcriptional regulator, NifA subfamily, Fis F... 563 e-159 UniRef50_A6EHB3 Sigma-54-dependent transcriptional regulator n=1... 563 e-158 UniRef50_Q3AR86 DNA-binding protein Fis / transcriptional regula... 562 e-158 UniRef50_B5ER80 Transcriptional regulator, NifA, Fis Family n=2 ... 562 e-158 UniRef50_A0LH02 Transcriptional regulator, NifA subfamily, Fis F... 561 e-158 UniRef50_D0MEW0 Transcriptional regulator, NifA subfamily, Fis F... 560 e-158 UniRef50_B8FJT8 Two component, sigma54 specific, transcriptional... 557 e-157 UniRef50_Q022Z3 Transcriptional regulator, Fis family n=1 Tax=Ca... 557 e-157 UniRef50_A5G4X7 Transcriptional regulator, NifA subfamily, Fis F... 557 e-157 UniRef50_A1ALJ3 Sigma-54 factor, interaction domain-containing p... 556 e-156 UniRef50_D2QGL7 Two component, sigma54 specific, transcriptional... 556 e-156 UniRef50_B5YH04 Transcriptional regulator n=1 Tax=Thermodesulfov... 556 e-156 UniRef50_C8X5B4 Transcriptional regulator, NifA subfamily, Fis F... 554 e-156 UniRef50_C1SIC3 Transcriptional regulator containing GAF, AAA-ty... 548 e-154 UniRef50_C6VTN7 Sigma 54 interacting domain protein n=1 Tax=Dyad... 546 e-153 UniRef50_A4SC79 DNA-binding protein Fis / transcriptional regula... 545 e-153 UniRef50_C7PEX2 Sigma54 specific transcriptional regulator, Fis ... 544 e-153 UniRef50_Q1D5E1 Sigma-54 dependent transcriptional regulator, Fi... 544 e-153 UniRef50_Q1PYB5 Similar to sigma 54 response regulatory protein ... 544 e-153 UniRef50_B6YRB5 Nif-specific regulatory protein n=1 Tax=Candidat... 543 e-153 UniRef50_A1AL12 Transcriptional regulator, Fis family n=1 Tax=Pe... 543 e-152 UniRef50_P30667 Nif-specific regulatory protein n=6 Tax=Bacteria... 542 e-152 UniRef50_UPI00016C5695 DNA-binding protein Fis / transcriptional... 542 e-152 UniRef50_C0GSE0 Sigma54 specific transcriptional regulator, Fis ... 541 e-152 UniRef50_Q2IQU1 Transcriptional regulator, NifA subfamily, Fis f... 541 e-152 UniRef50_C5S9Z4 Transcriptional regulator, NifA subfamily, Fis F... 541 e-152 UniRef50_C6VVC1 Sigma54 specific transcriptional regulator, Fis ... 541 e-152 UniRef50_Q39TT6 Transcriptional regulator, Fis family / DNA-bind... 540 e-152 UniRef50_D0KWC0 Transcriptional regulator, NifA subfamily, Fis F... 538 e-151 UniRef50_A8ZZQ7 Sigma-54 factor interaction domain-containing pr... 538 e-151 UniRef50_B8DJ70 Sigma54 specific transcriptional regulator, Fis ... 538 e-151 UniRef50_C0Q938 Sigma-54 dependent DNA-binding response regulato... 537 e-151 UniRef50_C9RS71 Transcriptional regulator, NifA subfamily, Fis F... 537 e-151 UniRef50_C7LPL8 Sigma54 specific transcriptional regulator with ... 537 e-151 UniRef50_B8IZX3 Transcriptional regulator, NifA subfamily, Fis F... 537 e-151 UniRef50_B8FB78 Transcriptional regulator, NifA subfamily, Fis F... 536 e-151 UniRef50_C1ZA32 Transcriptional regulator containing GAF, AAA-ty... 536 e-150 UniRef50_D2R1I6 Sigma 54 interacting domain protein n=1 Tax=Pire... 535 e-150 UniRef50_C7LTG8 Sigma54 specific transcriptional regulator with ... 535 e-150 UniRef50_C8X5C3 Sigma54 specific transcriptional regulator, Fis ... 534 e-150 UniRef50_B8F9P9 Sigma 54 interacting domain protein n=1 Tax=Desu... 534 e-150 UniRef50_A8FQ36 Formate hydrogenlyase transcriptional activator,... 533 e-149 UniRef50_Q73KY8 Sigma-54 dependent transcriptional regulator, pu... 532 e-149 UniRef50_B8FMY7 Sigma54 specific transcriptional regulator, Fis ... 532 e-149 UniRef50_D1TMK5 Transcriptional regulator NifA n=1 Tax=Burkholde... 530 e-149 UniRef50_Q2RHS4 Sigma54 specific transcriptional regulator, Fis ... 529 e-148 UniRef50_C0QE85 FhlA n=1 Tax=Desulfobacterium autotrophicum HRM2... 529 e-148 UniRef50_Q086E2 Two component, sigma54 specific, transcriptional... 529 e-148 UniRef50_B8DQY9 Transcriptional regulator, NifA subfamily, Fis F... 528 e-148 UniRef50_B3DZA5 Transcriptional regulator NifA, contains GAF, AA... 528 e-148 UniRef50_A8IQ96 Transcriptional regulator n=18 Tax=Proteobacteri... 528 e-148 UniRef50_A8ZV27 Transcriptional regulator, Fis family n=2 Tax=De... 527 e-148 UniRef50_A0LIA2 Sigma54 specific transcriptional regulator, Fis ... 526 e-148 UniRef50_C2KAU4 Sigma-54-dependent transcriptional regulator n=1... 526 e-147 UniRef50_A4VJ57 Nitrogen fixation positive regulatory protein n=... 526 e-147 UniRef50_Q1DC06 Sigma-54 dependent transcriptional regulator, Fi... 525 e-147 UniRef50_Q2LUG3 Transcriptional regulator containing GAF, AAA-ty... 525 e-147 UniRef50_A6C332 Two component, sigma54 specific, transcriptional... 525 e-147 UniRef50_D0LFQ8 Two component, sigma54 specific, transcriptional... 525 e-147 UniRef50_Q2RVQ1 Transcriptional regulator, NifA, Fis family n=3 ... 525 e-147 UniRef50_C7PLV9 Sigma54 specific transcriptional regulator, Fis ... 525 e-147 UniRef50_C9RBQ4 Two component, sigma54 specific, transcriptional... 524 e-147 UniRef50_B1Y713 Transcriptional regulator, NifA, Fis Family n=4 ... 524 e-147 UniRef50_Q893M0 Putative sigma-54 interacting protein n=1 Tax=Cl... 523 e-147 UniRef50_A6EHC6 Transcriptional regulator, NifA subfamily, Fis F... 523 e-146 UniRef50_Q2IEG0 Transcriptional regulator, Fis family / DNA-bind... 523 e-146 UniRef50_C7PBZ0 Two component, sigma54 specific, transcriptional... 522 e-146 UniRef50_A4J443 Two component, sigma54 specific, transcriptional... 522 e-146 UniRef50_D0LWE6 Transcriptional regulator, NifA subfamily, Fis F... 521 e-146 UniRef50_B8FCN8 Transcriptional regulator, NifA subfamily, Fis F... 521 e-146 UniRef50_Q1D574 Sigma-54 dependent transcriptional regulator, Fi... 521 e-146 UniRef50_C8WZC4 Two component, sigma54 specific, transcriptional... 520 e-146 UniRef50_Q2LRC8 Transcriptional regulator containing sigma 54 in... 520 e-146 UniRef50_Q1D6H5 Sigma-54 dependent DNA-binding response regulato... 519 e-145 UniRef50_D2QRC3 Sigma 54 interacting domain protein n=1 Tax=Spir... 519 e-145 UniRef50_C1ZB08 Sigma-54 interacting regulator n=1 Tax=Planctomy... 519 e-145 UniRef50_C8W392 Two component, sigma54 specific, transcriptional... 519 e-145 UniRef50_A9EN62 Sigma-54 dependent transcriptional regulator n=1... 519 e-145 UniRef50_B5YL21 Acetoacetate metabolism regulatory protein AtoC ... 518 e-145 UniRef50_B8IZ98 Transcriptional regulator, NifA subfamily, Fis F... 518 e-145 UniRef50_Q311G4 DNA-binding protein Fis / transcriptional regula... 518 e-145 UniRef50_A9F816 Protein kinase n=12 Tax=Bacteria RepID=A9F816_SORC5 517 e-145 UniRef50_A4J616 Two component, sigma54 specific, transcriptional... 517 e-145 UniRef50_A9ET26 Transcriptional regulator n=2 Tax=Myxococcales R... 517 e-145 UniRef50_C0QMI0 Sigma-54 dependent two component transcriptional... 517 e-145 UniRef50_B8GM58 Transcriptional regulator, NifA subfamily, Fis F... 517 e-145 UniRef50_P09133 Nif-specific regulatory protein n=18 Tax=Rhizobi... 516 e-144 UniRef50_C0GUF2 Sigma54 specific transcriptional regulator, Fis ... 515 e-144 UniRef50_A9GA77 Protein kinase n=15 Tax=Bacteria RepID=A9GA77_SORC5 515 e-144 UniRef50_Q3A356 Two component, sigma54 specific, transcriptional... 514 e-144 UniRef50_P03027 Nif-specific regulatory protein n=14 Tax=Proteob... 514 e-144 UniRef50_C6HY50 Sigma54 specific transcriptional regulator, Fis ... 514 e-144 UniRef50_C4XRA9 Transcriptional regulatory protein ZraR n=9 Tax=... 513 e-144 UniRef50_Q01S08 Transcriptional regulator, NifA subfamily, Fis F... 513 e-144 UniRef50_C4FI59 AAA family ATPase n=1 Tax=Sulfurihydrogenibium y... 513 e-144 UniRef50_B8FEY3 Two component, sigma54 specific, transcriptional... 513 e-144 UniRef50_A0YEC8 Transcriptional regulatory protein n=2 Tax=Prote... 513 e-143 UniRef50_A5D2K0 Transcriptional regulator n=2 Tax=Clostridia Rep... 512 e-143 UniRef50_Q1N5U9 Sigma-54 dependent transcriptional regulator/sen... 512 e-143 UniRef50_Q1D4K8 Sigma-54 dependent DNA-binding response regulato... 512 e-143 UniRef50_D2QZ64 Transcriptional regulator, NifA subfamily, Fis F... 512 e-143 UniRef50_Q2LSK2 Sigma-54 dependent transcriptional regulator n=4... 511 e-143 UniRef50_Q1INE5 Two component, sigma54 specific, transcriptional... 511 e-143 UniRef50_B5ZJF6 Transcriptional regulator, NifA, Fis Family n=4 ... 510 e-143 UniRef50_D2R3W1 Sigma54 specific transcriptional regulator, Fis ... 510 e-142 UniRef50_A8ZZC1 Transcriptional regulator, NifA subfamily, Fis F... 510 e-142 UniRef50_Q0SQI9 Phosphocarrier HPr/sensory box protein/sigma-54 ... 509 e-142 UniRef50_UPI00016C585F ornithine decarboxylase inhibitor-putativ... 509 e-142 UniRef50_B0VES5 Putative uncharacterized protein n=1 Tax=Candida... 509 e-142 UniRef50_A7HBA5 Two component, sigma54 specific, transcriptional... 509 e-142 UniRef50_P05407 Nif-specific regulatory protein n=11 Tax=Rhizobi... 508 e-142 UniRef50_A0L6X2 Transcriptional regulator, NifA, Fis Family n=6 ... 508 e-142 UniRef50_Q06065 Acetoacetate metabolism regulatory protein atoC ... 508 e-142 UniRef50_Q8Z333 Transcriptional regulatory protein zraR n=36 Tax... 508 e-142 UniRef50_Q2IQM1 Two component, sigma54 specific, transcriptional... 508 e-142 UniRef50_C8WE21 Transcriptional regulator, NifA, Fis Family n=4 ... 508 e-142 UniRef50_C0QC42 Putative transcriptional activator n=1 Tax=Desul... 507 e-142 UniRef50_C0GRG2 PAS modulated sigma54 specific transcriptional r... 507 e-142 UniRef50_D2TTF4 Two-component system response regulator n=3 Tax=... 507 e-142 UniRef50_Q027A1 Two component, sigma54 specific, transcriptional... 507 e-142 UniRef50_Q1PZT5 Strongly similar to sigma 54 response regulatory... 507 e-142 UniRef50_A3ESE7 Sigma54 specific transcriptional regulator, Fis ... 506 e-142 UniRef50_B8FIT8 PAS modulated sigma54 specific transcriptional r... 506 e-141 UniRef50_Q1PYI3 Strongly similar to sigma 54 response regulatory... 506 e-141 UniRef50_Q2LUG8 Response regulator containing CheY-like receiver... 506 e-141 UniRef50_Q4K714 Sigma-54 dependent DNA-binding response regulato... 506 e-141 UniRef50_C9KM56 Sigma-54 dependent transcriptional regulator/sen... 505 e-141 UniRef50_Q3ABV5 Sigma-54 dependent transcriptional regulator n=3... 505 e-141 UniRef50_B8GQ33 NifA subfamily transcriptional regulator n=1 Tax... 505 e-141 UniRef50_C1ZGY0 Transcriptional regulator containing GAF, AAA-ty... 505 e-141 UniRef50_A4J593 Sigma54 specific transcriptional regulator, Fis ... 505 e-141 UniRef50_C5BI62 Transcriptional regulator, Fis family n=5 Tax=Ga... 504 e-141 UniRef50_Q2LPT8 Transcriptional regulator, sigma-54-dependent n=... 504 e-141 UniRef50_A7H973 Sigma54 specific transcriptional regulator, Fis ... 504 e-141 UniRef50_Q897M6 Transcriptional regulatory protein n=1 Tax=Clost... 503 e-140 UniRef50_B5YHK7 SasR n=1 Tax=Thermodesulfovibrio yellowstonii DS... 503 e-140 UniRef50_B9XM81 Sigma54 specific transcriptional regulator with ... 502 e-140 UniRef50_C8W252 PAS modulated sigma54 specific transcriptional r... 502 e-140 UniRef50_B3DZ60 DNA-binding response regulator, NtrC family (Con... 502 e-140 UniRef50_B5WAL2 PAS modulated sigma54 specific transcriptional r... 502 e-140 UniRef50_Q1Q6P9 Similar to Sigma-54 dependent transcriptional re... 502 e-140 UniRef50_Q1PV55 Strongly similar to sigma 54 response regulator ... 502 e-140 UniRef50_B3E4S0 Two component, sigma54 specific, transcriptional... 502 e-140 UniRef50_A8UFP5 Sigma54 specific transcriptional regulator with ... 501 e-140 UniRef50_A5G9U3 Two component, sigma54 specific, transcriptional... 500 e-140 UniRef50_Q3ACE2 Sigma-54 dependent transcriptional regulator n=1... 500 e-140 UniRef50_C7LQX0 Sigma54 specific transcriptional regulator with ... 500 e-140 UniRef50_C6E9E0 Two component, sigma54 specific, transcriptional... 500 e-140 UniRef50_C1SGB7 Response regulator with CheY-like receiver, AAA-... 500 e-140 UniRef50_A6GJF4 Sigma-54 dependent, Vanadium nitrogenase transcr... 500 e-140 UniRef50_Q6ARB9 Probable two-component system response regulator... 500 e-139 UniRef50_D0LSM1 Transcriptional regulator, NifA subfamily, Fis F... 500 e-139 UniRef50_C6MX44 Two component, sigma54 specific, transcriptional... 499 e-139 UniRef50_Q1Q1B9 Strong similarity to sigma 54 response regulator... 498 e-139 UniRef50_B8FXH0 PAS modulated sigma54 specific transcriptional r... 498 e-139 UniRef50_B2S230 Formate hydrogenlyase transcriptional activator ... 498 e-139 UniRef50_Q9APD9 Transcriptional regulatory protein zraR n=89 Tax... 498 e-139 UniRef50_A3ZZQ6 Nitrogen fixation protein anfA (Sigma-54 depende... 497 e-139 UniRef50_A9A0V6 Two component, sigma54 specific, transcriptional... 497 e-139 UniRef50_C0Z5U4 Probable transcriptional regulator n=1 Tax=Brevi... 497 e-139 UniRef50_B8JAZ2 Two component, sigma54 specific, transcriptional... 497 e-139 UniRef50_A7HIM1 Two component, sigma54 specific, transcriptional... 497 e-139 UniRef50_C7LR14 PAS modulated sigma54 specific transcriptional r... 496 e-138 UniRef50_A9G6P0 Sigma-54 dependent DNA-binding response regulato... 495 e-138 UniRef50_Q1D552 Sigma-54 dependent DNA-binding reponse regulator... 495 e-138 UniRef50_B2A1V9 PAS modulated sigma54 specific transcriptional r... 495 e-138 UniRef50_C7PDE5 Sigma54 specific transcriptional regulator, Fis ... 495 e-138 UniRef50_Q21UU9 Two component, sigma54 specific, transcriptional... 495 e-138 UniRef50_B8FGF3 Sigma54 specific transcriptional regulator, Fis ... 495 e-138 UniRef50_Q3A2M3 Two component, sigma54 specific, transcriptional... 495 e-138 UniRef50_Q53206 Nif-specific regulatory protein n=5 Tax=Alphapro... 495 e-138 UniRef50_C0QRG3 Transcriptional regulatory protein ZraR n=2 Tax=... 495 e-138 UniRef50_Q12K16 DNA-binding protein Fis / transcriptional regula... 494 e-138 UniRef50_A4J599 Sigma54 specific transcriptional regulator, Fis ... 494 e-138 UniRef50_B9M8I7 PAS modulated sigma54 specific transcriptional r... 494 e-138 UniRef50_A6LYP8 Sigma54 specific transcriptional regulator, Fis ... 494 e-138 UniRef50_A6M003 Two component, sigma54 specific, transcriptional... 494 e-138 UniRef50_B3E7V2 Two component, sigma54 specific, transcriptional... 494 e-138 UniRef50_B0K647 Sigma54 specific transcriptional regulator, Fis ... 493 e-138 UniRef50_A9GEU8 Protein kinase n=1 Tax=Sorangium cellulosum 'So ... 493 e-138 UniRef50_Q1Q0T6 Strongly similar to sigma 54 response regulator ... 493 e-137 UniRef50_D0LMB6 Sigma 54 interacting domain protein n=1 Tax=Hali... 493 e-137 UniRef50_Q6MMW8 Acetoacetate metabolism regulatory protein atoC ... 492 e-137 UniRef50_Q1D1F9 DNA-binding reponse regulator HsfA n=3 Tax=Myxoc... 492 e-137 UniRef50_B2S3B3 Response regulatory protein n=28 Tax=Spirochaeta... 492 e-137 UniRef50_D2R4Q9 Sigma54 specific transcriptional regulator, Fis ... 492 e-137 UniRef50_B5YI42 AdnA n=3 Tax=Bacteria RepID=B5YI42_THEYD 492 e-137 UniRef50_Q1IL93 Two component, sigma54 specific, transcriptional... 492 e-137 UniRef50_B8FD65 Sigma54 specific transcriptional regulator, Fis ... 492 e-137 UniRef50_C9RXL1 GAF modulated sigma54 specific transcriptional r... 492 e-137 UniRef50_C7PQF7 Two component, sigma54 specific, transcriptional... 491 e-137 UniRef50_D1R5K3 Putative uncharacterized protein n=1 Tax=Parachl... 491 e-137 UniRef50_D1CFK1 Two component, sigma54 specific, transcriptional... 491 e-137 UniRef50_Q2LRW3 Response regulator containing sigma 54 interacti... 490 e-137 UniRef50_A9AYA4 Two component, sigma54 specific, transcriptional... 490 e-137 UniRef50_Q01W56 Sigma54 specific transcriptional regulator, Fis ... 490 e-137 UniRef50_P54931 Nif-specific regulatory protein n=9 Tax=Alphapro... 490 e-137 UniRef50_B2V8F5 Two component, sigma54 specific, transcriptional... 489 e-136 UniRef50_Q1PYM7 Similar to sigma 54 response regulator n=1 Tax=C... 489 e-136 UniRef50_A1ATK4 Two component, sigma54 specific, transcriptional... 489 e-136 UniRef50_B8IZ33 Two component, sigma54 specific, transcriptional... 489 e-136 UniRef50_B1ZR63 Two component, sigma54 specific, transcriptional... 489 e-136 UniRef50_Q39SU6 Two component, sigma54 specific, transcriptional... 489 e-136 Sequences not found previously or not previously below threshold: UniRef50_A6GDL8 Sigma-54 dependent transcriptional regulator, Fi... 504 e-141 UniRef50_Q7UK84 Probable two-component response regulator n=1 Ta... 504 e-141 UniRef50_C9RIK1 Transcriptional regulator, NifA subfamily, Fis F... 502 e-140 UniRef50_B5YHF3 Acetoacetate metabolism regulatory protein AtoC ... 502 e-140 UniRef50_A3ZU96 Probable two-component response regulator n=1 Ta... 500 e-140 UniRef50_C1ZJW6 Transcriptional regulator containing GAF, AAA-ty... 492 e-137 UniRef50_B8FWA2 PAS modulated sigma54 specific transcriptional r... 491 e-137 >UniRef50_P19323 Formate hydrogenlyase transcriptional activator n=72 Tax=Enterobacteriaceae RepID=FHLA_ECOLI Length = 692 Score = 1039 bits (2686), Expect = 0.0, Method: Composition-based stats. Identities = 692/692 (100%), Positives = 692/692 (100%) Query: 1 MSYTPMSDLGQQGLFDITRTLLQQPDLASLCEALSQLVKRSALADNAAIVLWQAQTQRAS 60 MSYTPMSDLGQQGLFDITRTLLQQPDLASLCEALSQLVKRSALADNAAIVLWQAQTQRAS Sbjct: 1 MSYTPMSDLGQQGLFDITRTLLQQPDLASLCEALSQLVKRSALADNAAIVLWQAQTQRAS 60 Query: 61 YYASREKDTPIKYEDETVLAHGPVRSILSRPDTLHCSYEEFCETWPQLDAGGLYPKFGHY 120 YYASREKDTPIKYEDETVLAHGPVRSILSRPDTLHCSYEEFCETWPQLDAGGLYPKFGHY Sbjct: 61 YYASREKDTPIKYEDETVLAHGPVRSILSRPDTLHCSYEEFCETWPQLDAGGLYPKFGHY 120 Query: 121 CLMPLAAEGHIFGGCEFIRYDDRPWSEKEFNRLQTFTQIVSVVTEQIQSRVVNNVDYELL 180 CLMPLAAEGHIFGGCEFIRYDDRPWSEKEFNRLQTFTQIVSVVTEQIQSRVVNNVDYELL Sbjct: 121 CLMPLAAEGHIFGGCEFIRYDDRPWSEKEFNRLQTFTQIVSVVTEQIQSRVVNNVDYELL 180 Query: 181 CRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYST 240 CRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYST Sbjct: 181 CRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYST 240 Query: 241 HYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTL 300 HYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTL Sbjct: 241 HYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTL 300 Query: 301 CLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERL 360 CLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERL Sbjct: 301 CLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERL 360 Query: 361 VDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIAR 420 VDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIAR Sbjct: 361 VDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIAR 420 Query: 421 AIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLD 480 AIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLD Sbjct: 421 AIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLD 480 Query: 481 EVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYY 540 EVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYY Sbjct: 481 EVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYY 540 Query: 541 RLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRE 600 RLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRE Sbjct: 541 RLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRE 600 Query: 601 LENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVV 660 LENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVV Sbjct: 601 LENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVV 660 Query: 661 AGPKGAAQRLGLKRTTLLSRMKRLGIDKSALI 692 AGPKGAAQRLGLKRTTLLSRMKRLGIDKSALI Sbjct: 661 AGPKGAAQRLGLKRTTLLSRMKRLGIDKSALI 692 >UniRef50_P40734 Formate hydrogenlyase transcriptional activator n=63 Tax=Enterobacteriaceae RepID=FHLA_SALTY Length = 692 Score = 1005 bits (2598), Expect = 0.0, Method: Composition-based stats. Identities = 625/691 (90%), Positives = 653/691 (94%) Query: 1 MSYTPMSDLGQQGLFDITRTLLQQPDLASLCEALSQLVKRSALADNAAIVLWQAQTQRAS 60 MSYTPMSDLGQQGLFDITRTLLQQPDLASL EALSQLVKRSALAD+A IVLWQAQ+QRA Sbjct: 1 MSYTPMSDLGQQGLFDITRTLLQQPDLASLSEALSQLVKRSALADSAGIVLWQAQSQRAQ 60 Query: 61 YYASREKDTPIKYEDETVLAHGPVRSILSRPDTLHCSYEEFCETWPQLDAGGLYPKFGHY 120 YYA+RE P++YEDETVLAHGPVR ILSRPD LHC++ EF ETWPQL A GLYP+FGHY Sbjct: 61 YYATRENGRPVEYEDETVLAHGPVRRILSRPDALHCNFHEFTETWPQLAASGLYPEFGHY 120 Query: 121 CLMPLAAEGHIFGGCEFIRYDDRPWSEKEFNRLQTFTQIVSVVTEQIQSRVVNNVDYELL 180 CL+PLAAEG IFGGCEFIR +DRPWSEKE++RL TFTQIV VV EQIQ+RV NNVDY+LL Sbjct: 121 CLLPLAAEGRIFGGCEFIRQEDRPWSEKEYDRLHTFTQIVGVVAEQIQNRVNNNVDYDLL 180 Query: 181 CRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYST 240 CRERDNFRILVAITNAVLSRLD+DELVSEVAKEIH+YF+ID ISIVLRSHRKNKLNIYST Sbjct: 181 CRERDNFRILVAITNAVLSRLDIDELVSEVAKEIHHYFNIDAISIVLRSHRKNKLNIYST 240 Query: 241 HYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTL 300 HYLD+ HPAHEQSEVDEAGTLTERVFKSKEMLLINL+ERD LAPYERMLFDTWGNQIQTL Sbjct: 241 HYLDEHHPAHEQSEVDEAGTLTERVFKSKEMLLINLNERDPLAPYERMLFDTWGNQIQTL 300 Query: 301 CLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERL 360 CLLPLMSG TMLGVLKLAQCEEKVFTT NL LLRQIAERVAIAVDNALAYQEIHRLKERL Sbjct: 301 CLLPLMSGKTMLGVLKLAQCEEKVFTTANLKLLRQIAERVAIAVDNALAYQEIHRLKERL 360 Query: 361 VDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIAR 420 VDENLALTEQLNNVDSEFGEIIGRSEAMY+VLKQVEMVAQSDSTVLILGETGTGKELIAR Sbjct: 361 VDENLALTEQLNNVDSEFGEIIGRSEAMYNVLKQVEMVAQSDSTVLILGETGTGKELIAR 420 Query: 421 AIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLD 480 AIHNLSGR+ RRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLD Sbjct: 421 AIHNLSGRSGRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLD 480 Query: 481 EVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYY 540 EVGDMPLELQPKLLRVLQEQEFERLGSNK+IQTDVRLIAATNRDLKKMVADREFR+DLYY Sbjct: 481 EVGDMPLELQPKLLRVLQEQEFERLGSNKLIQTDVRLIAATNRDLKKMVADREFRNDLYY 540 Query: 541 RLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRE 600 RLNVFPI LPPLRERPEDIPLL KAFTFKIARR+GRNIDSIPAETLRTLS+MEWPGNVRE Sbjct: 541 RLNVFPIQLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSSMEWPGNVRE 600 Query: 601 LENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVV 660 LENV+ERAVLLTRGNVLQLSLPDI P+T P AT EGEDEYQLI+RVLKETNGVV Sbjct: 601 LENVVERAVLLTRGNVLQLSLPDITAVTPDTSPVATESDKEGEDEYQLIIRVLKETNGVV 660 Query: 661 AGPKGAAQRLGLKRTTLLSRMKRLGIDKSAL 691 AGPKGAAQRLGLKRTTLLSRMKRLGIDK AL Sbjct: 661 AGPKGAAQRLGLKRTTLLSRMKRLGIDKDAL 691 >UniRef50_Q2RXL4 Transcriptional regulator, NifA subfamily, Fis family n=6 Tax=Proteobacteria RepID=Q2RXL4_RHORT Length = 733 Score = 828 bits (2140), Expect = 0.0, Method: Composition-based stats. Identities = 309/716 (43%), Positives = 413/716 (57%), Gaps = 38/716 (5%) Query: 14 LFDITRTLLQQPDLASLCEALSQLVKRSALADNAAIVLWQAQTQRASYYASREKDTPIKY 73 L D++ L DL SL AL L L D ++L+ A T + ++ + Sbjct: 14 LLDVSEILELNRDLNSLLGALCDLPASIGLFDYVNLLLYDAPTDTMTLFSQGDVGGGYAR 73 Query: 74 EDETVLAHGPVRSILSRPDTLHCSYEEFCETWPQLDAGGLYPKFGHYCLMPLAAEGHIFG 133 D GP + + +R CS EE+ + ++ A + G YC MPL G Sbjct: 74 IDGLAPTEGPGQVVWARQRPFVCSGEEYRRHFLKIAALRRNQRVGLYCQMPLTTSQRRLG 133 Query: 134 GCEFIRYDDRPWSEKEFNRLQTFTQIVSVVTEQIQSRVVNNVDYELLCRERDNFRILVAI 193 G EFI + E + L+ ++++ E + ++ E L ERD+ ILV + Sbjct: 134 GVEFISSRPTTYDEDDLTFLRRVASVIAISVENALIGEMRQMEEERLRGERDHNHILVEV 193 Query: 194 TNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQHPAHEQS 253 TNAV+S+L +++LV EV++ IH +F +D +S+ L + S ++ P + Sbjct: 194 TNAVISKLKLEDLVDEVSRSIHRFFGVDFVSLDLVDPATATIKSRSVYFQKGLGPVWGSA 253 Query: 254 EVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLG 313 + + +F++K ++ + LA + Q C +PL+S +LG Sbjct: 254 QGPLGASPMAPLFETKAPRILARADLGALARGHDQMTLLTNAGFQVACGIPLLSAGHVLG 313 Query: 314 VLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALT----- 368 VL LA E FT N+ LL ++A R+ IAV+NALAY EI RLK++L EN L Sbjct: 314 VLTLASRERDKFTDYNIGLLGEVASRICIAVENALAYGEISRLKDQLSRENKQLAKERYY 373 Query: 369 -EQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSG 427 E+ +FG+IIG S A+ VL+QVE+VA SDSTVLILGETGTGKELIARAIH LS Sbjct: 374 LEEEIRRTEDFGDIIGISPAIRGVLEQVELVADSDSTVLILGETGTGKELIARAIHMLSQ 433 Query: 428 RNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPL 487 R R M+K+NCAA+P+ LLESDLFGHE+GAFTGA AQ+ GRFELAD+ +LFLDEVGD+P+ Sbjct: 434 RKKRTMIKVNCAAIPSALLESDLFGHEKGAFTGAIAQKSGRFELADRGTLFLDEVGDIPI 493 Query: 488 ELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPI 547 +LQPKLLR LQE+E ER+G ++ I DVR+IAATNRDL MV R FR DLYYRLNVFPI Sbjct: 494 DLQPKLLRALQEREIERVGGHQPIPVDVRMIAATNRDLTGMVEKRLFRGDLYYRLNVFPI 553 Query: 548 HLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIER 607 +PPLRER EDIPL+A F K AR++ R I++ AET+ L N+ WPGNVREL+NVIER Sbjct: 554 LIPPLRERREDIPLMADYFMRKTARKMNRAIEAFSAETMDMLLNLPWPGNVRELQNVIER 613 Query: 608 AVLLTRGNVLQLS---------------------------LPDIVLPEPETPPAATVVAL 640 AV+LT+G VL L LP PP A Sbjct: 614 AVILTKGPVLHLPATELRHHLAPSAALPSEDAVIPLRAAVLPSAASAPDPLPPPAGSSPN 673 Query: 641 EGED-----EYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSAL 691 G+ E I+RVL+ETNG+V GP+GAA LG+KRTTLLSRM+RLGI + Sbjct: 674 PGDLAGEAIERDQILRVLRETNGIVGGPRGAAAHLGMKRTTLLSRMRRLGISPKEV 729 Score = 61.4 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 71/180 (39%), Gaps = 4/180 (2%) Query: 185 DNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLD 244 + + +L+ ++ + D++ L+ + D ++++L + + ++S + Sbjct: 9 ERYELLLDVSEILELNRDLNSLLGALCDLPASIGLFDYVNLLLYDAPTDTMTLFSQGDVG 68 Query: 245 KQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLP 304 + + E + V+ + + + E L ++ C +P Sbjct: 69 GGYARIDGLAPTEGPG--QVVWARQRPFVCSGEEYRRHFLKIAALRR--NQRVGLYCQMP 124 Query: 305 LMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDEN 364 L + LG ++ + +L LR++A +AI+V+NAL + +ERL E Sbjct: 125 LTTSQRRLGGVEFISSRPTTYDEDDLTFLRRVASVIAISVENALIGEMRQMEEERLRGER 184 >UniRef50_A0KL56 Formate hydrogenlyase transcriptional activator n=5 Tax=Gammaproteobacteria RepID=A0KL56_AERHH Length = 709 Score = 779 bits (2012), Expect = 0.0, Method: Composition-based stats. Identities = 288/718 (40%), Positives = 389/718 (54%), Gaps = 51/718 (7%) Query: 1 MSYTPMSDLG---QQGLFDITRTLLQQPDLASLCEALSQLVKRSALADNAAIVLWQAQTQ 57 +S P++D+ G +++ LL L + L+++ D ++L + Sbjct: 4 VSAIPLTDISPIWDDGFLSLSKNLLSAVTLDDFIKKLNRIQPCFRQVDRVNLILNLGTGE 63 Query: 58 RASYYASREKDTPIKYEDETVLAHGPVRSILSRPDTLHCSYEE--------FCETWPQLD 109 A +Y E+ GP I + D LH S E+ F QL Sbjct: 64 EAVFYYLGEQ--------------GPAHLICRKAD-LHFSREQAIVLPASRFRHRCEQLA 108 Query: 110 AGGLYPKFGHYCLMPLAAEGHIFGGCEFIRYDDRPWSEKEFNRLQTFTQIVSVVTEQIQS 169 + +Y YC +P+ GG EFI + + + +L IV++ E + Sbjct: 109 STPVYDGLHSYCQLPITTARSHLGGVEFISREANAFPMETLAKLTQLAAIVAIALENVLD 168 Query: 170 RVVNNVDYELLCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRS 229 + L ERD+ +ILV +TNAV+ + + EL + +H++F I + + + Sbjct: 169 KERTLEQANSLRLERDSCKILVDVTNAVIKLVRIAELPQSLFTILHHHFGISSLCLAEYN 228 Query: 230 HRKNKLNIYSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERML 289 + Y + ++ P E L + S E + + R Sbjct: 229 ATSDSFKSYLVNQQQREQPGIINHSCFEKNCLQGALGHS-EPFFLYREQGHGCQSSCRFT 287 Query: 290 FDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALA 349 + C+LPL +LGVL L+ + F +++LL Q+A R AIA++N A Sbjct: 288 SQILPPDADSSCILPLRYRGNLLGVLILSHPQADFFADLDISLLEQVAARTAIAMNNVQA 347 Query: 350 YQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILG 409 QEI L +F II +S M VL++V++VAQSD TVLILG Sbjct: 348 QQEIS---NTTGAREKTLRVDGPAPQGDFANIIYQSAVMEKVLEKVKLVAQSDCTVLILG 404 Query: 410 ETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRF 469 ETGTGKELIA+AIH LS R++ MVK+NCAA+P GL+ESDLFGHE+GAFTGA QRIGRF Sbjct: 405 ETGTGKELIAQAIHALSARHDHEMVKVNCAAIPTGLIESDLFGHEKGAFTGALTQRIGRF 464 Query: 470 ELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMV 529 E A K +LFLDEVGDMPL+LQPKLLRVLQE E ER+G++ I DVRL+AATN DL MV Sbjct: 465 ERAHKGTLFLDEVGDMPLDLQPKLLRVLQEHELERVGNSNPIAIDVRLVAATNCDLLSMV 524 Query: 530 ADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTL 589 ++ FRSDLYYRLNVFPI LPPLRER EDIPLL F KIA+R+ R I SIPA+ ++ L Sbjct: 525 KNKRFRSDLYYRLNVFPIELPPLRERREDIPLLVNFFIKKIAKRMRRTITSIPADAMKML 584 Query: 590 SNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLP--------------------EP 629 ++ W GN+RELEN+IERAV++TRG+VL LS PD +LP Sbjct: 585 VSLPWYGNIRELENIIERAVVMTRGHVLNLS-PDELLPLKGFHKIETLVYDEPARELFRE 643 Query: 630 ETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 P +GEDE I+R LK NG+VAG +GAAQRLG+KRTTLLS+MKRLGI Sbjct: 644 PLPALPQGDEAQGEDERVSIIRALKACNGIVAGERGAAQRLGMKRTTLLSKMKRLGIS 701 >UniRef50_Q026M7 Transcriptional regulator, NifA subfamily, Fis Family n=4 Tax=Bacteria RepID=Q026M7_SOLUE Length = 706 Score = 748 bits (1933), Expect = 0.0, Method: Composition-based stats. Identities = 267/685 (38%), Positives = 395/685 (57%), Gaps = 26/685 (3%) Query: 12 QGLFDITRTLLQQPDLASLCEALSQLVKRSALADNA---------AIVLWQAQTQRASYY 62 + L +++ + D L A+++ + R D +LW A + Sbjct: 25 EALIRVSQAIGAHRDPKELFRAMTRELHRVMQFDGIVIAQYDEASNEILWNACEVCSQQG 84 Query: 63 ASREKDTPIKYEDETVLAHGPVRSILSRPDTLHCSYEEFCETWPQLDAGGLYPKFGHYCL 122 A R D P DET+ + + R + L + +P++ F C Sbjct: 85 AVRPPDIP---ADETI-----TKWVYQRQEPLVIPALDQETRFPRMIEFLRSKGFQSICA 136 Query: 123 MPLAAEGHIFGGCEFIRYDDRPWSEKEFNRLQTFTQIVSVVTEQIQSRVVNNVDYELLCR 182 +PL G + ++E L ++ + + + V L R Sbjct: 137 LPLTTVHRRIGSVAVASKRPDAYCKEEVRFLSLVADQAALAIDDALNFETSQVAQAALQR 196 Query: 183 ERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHY 242 + D R+L+ + N++ S L++ EL+ ++ I D + + L +L +Y+ + Sbjct: 197 KNDRLRLLLEVNNSIASNLELRELLRAISASIRPVMQCDGVGVALPEGENQQLRVYALDF 256 Query: 243 LDKQHPAHEQSEVDEAG-TLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLC 301 + E + + R F++ E I D P ++ +C Sbjct: 257 PNGNGRVREDILIPANEDSPGARAFQNGEPANILSASIDPTDPL------ATAEGLKAVC 310 Query: 302 LLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLV 361 +PL+S + +G+L LA+ E F+ ++ L + +VAIAV+NALAY EI LK+RL Sbjct: 311 HIPLISRNRTVGLLSLARLEPVAFSPRDIEFLSLVGNQVAIAVENALAYHEISALKDRLA 370 Query: 362 DENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARA 421 E + L +++ + + F EI+GRS+A+ +VL+++E VA +DSTVLI GETGTGKELIARA Sbjct: 371 QEKIYLEDEIRS-ELNFEEIVGRSQALRTVLQEIETVAPTDSTVLIYGETGTGKELIARA 429 Query: 422 IHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDE 481 IHNLS R+ VK+NCAA+P GLLES++FGHE+GAFTGA AQRIGRFELA ++FLDE Sbjct: 430 IHNLSSRSRNSFVKLNCAAIPTGLLESEMFGHEKGAFTGAVAQRIGRFELAHHGTVFLDE 489 Query: 482 VGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYR 541 +G++PLELQPKLLRVLQE+EFERLGS++ ++TD RLIAATNRDL MV DR FR+DL+YR Sbjct: 490 IGEIPLELQPKLLRVLQEREFERLGSSRTMRTDARLIAATNRDLATMVEDRNFRADLFYR 549 Query: 542 LNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVREL 601 LNVFP+ +P LR+RPEDIPLL + F + ARR+G+ +D+IP ET+ L WPGN+REL Sbjct: 550 LNVFPVQVPALRDRPEDIPLLVRHFVQQFARRMGKAVDTIPTETMNVLVRYHWPGNIREL 609 Query: 602 ENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVVA 661 +N++ERAV+L+ G VL++ L D+ L P A LE E + I+ L+ + V++ Sbjct: 610 QNLLERAVILSAGPVLKVPLNDLQLQAPAPTTARKTETLES-AERRHILEALEAADWVIS 668 Query: 662 GPKGAAQRLGLKRTTLLSRMKRLGI 686 GPKGAA+ LGLKR+TL +RM++LGI Sbjct: 669 GPKGAAEALGLKRSTLQARMEKLGI 693 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 42/222 (18%), Positives = 96/222 (43%), Gaps = 11/222 (4%) Query: 185 DNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLD 244 + + L+ ++ A+ + D EL + +E+H D I I N++ +++ + Sbjct: 22 ERYEALIRVSQAIGAHRDPKELFRAMTRELHRVMQFDGIVIAQYDEASNEI-LWNACEVC 80 Query: 245 KQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLP 304 Q A ++ T+T+ V++ +E L+I +++ P + G Q++C LP Sbjct: 81 SQQGAVRPPDIPADETITKWVYQRQEPLVIPALDQETRFPRMIEFLRSKGF--QSICALP 138 Query: 305 LMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDEN 364 L + +G + +A + + L +A++ A+A+D+AL ++ + L +N Sbjct: 139 LTTVHRRIGSVAVASKRPDAYCKEEVRFLSLVADQAALAIDDALNFETSQVAQAALQRKN 198 Query: 365 LALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVL 406 L L +S + + + + ++ S V+ Sbjct: 199 DRLRLLLEVNNSIASNL--------ELRELLRAISASIRPVM 232 >UniRef50_Q1ZUC7 Formate hydrogenlyase transcriptional activator n=4 Tax=Vibrionaceae RepID=Q1ZUC7_PHOAS Length = 717 Score = 693 bits (1789), Expect = 0.0, Method: Composition-based stats. Identities = 269/704 (38%), Positives = 400/704 (56%), Gaps = 37/704 (5%) Query: 11 QQGLFDITRTLLQQPDLASLCEALSQLVKRSALADNAAIVLWQAQTQRASYYASREKDTP 70 + L ++ LL D++ + + L+ + ++L + S Y ++D Sbjct: 24 ESDLMTFSKALLSINDISGVMDFLNNEDLLFINVERVNLLLKNDLDSQPSLYYL-DQDKQ 82 Query: 71 IKYEDETVLAHGPVRSILSRPDTLHCSYEEFCETWPQLDAGGLYPKFGHYCLMPLAAEGH 130 + D T G + + R E +T+PQL+ Y +YC +PL+ Sbjct: 83 CQQFDYTGSITG-LHGVTMRDYCHQMDGETLYQTFPQLENHPAYDSVFNYCKIPLSICNQ 141 Query: 131 IFGGCEFIRYD--DRPWSEKEFNRLQTFTQIVSVVTEQIQSRVVNNVDYELLCRERDNFR 188 G E+I D SEK+F + F ++S + E I + E L E++NF+ Sbjct: 142 PLGAIEYINLTMPDDSESEKQF---KLFNNMISAMIEHIIEHQTASTFTEKLTTEKNNFQ 198 Query: 189 ILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQHP 248 +LV +TN V+S+ EL+ + + ++ +FD+ D+SI + N +S +++ + Sbjct: 199 VLVDVTNTVISQSTKKELIGSLLRFLYQHFDMTDLSI--IQLQDGHYNQHSACFINNE-- 254 Query: 249 AHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSG 308 Q L + K+ + + +N + + + ++++T C++PL+ Sbjct: 255 IDYQCHFFTNDKLIKNAIKNNKPVFLNAIDIKKMQADNNS--PYFPSRVKTACVMPLVFR 312 Query: 309 DTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALT 368 +G + + E + T+L L +QIA RVA+A+ + +Q + N+ Sbjct: 313 GIAVGYISFMKPIEAPYQNTDLELFKQIAARVALAMHSIKTHQASTPNQPITKFVNI--- 369 Query: 369 EQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGR 428 ++ F +II +SE M VL+QV +VA DSTVLILGE+GTGKELIARAIH LS R Sbjct: 370 DEGMGEHVIFDDIISQSEVMNKVLEQVALVASCDSTVLILGESGTGKELIARAIHKLSLR 429 Query: 429 NNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLE 488 + MVKMNCAA+PAGL ES+LFGHERGAFTGA +QR+GRFE A K +LFLDE+GDMPLE Sbjct: 430 SKTDMVKMNCAAIPAGLFESELFGHERGAFTGAISQRVGRFEQAHKGTLFLDEIGDMPLE 489 Query: 489 LQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIH 548 LQPKLLR LQE E ER+G N +I DVR++ ATN DL + V +++FR+DLYYRLNVFPI Sbjct: 490 LQPKLLRALQENEIERVGKNALISVDVRIVVATNVDLLRRVEEKKFRNDLYYRLNVFPIQ 549 Query: 549 LPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERA 608 +PPLRER EDIPLL K FT ++A+++G+ I +I AE L +S WPGNVREL N +ER+ Sbjct: 550 IPPLRERAEDIPLLVKHFTRELAKKMGKTITAIAAEDLAVMSVFPWPGNVRELRNFVERS 609 Query: 609 VLLTRGNVLQLSLPDI-------VLPEPETPP---------AATVVALEGEDEYQLI--- 649 V+LTRGNVL + + ++ +P + PP A++G+ +I Sbjct: 610 VILTRGNVLNVPVHELKAVSHSACVPTEKVPPVNPEAAGVINTPEPAVKGDVVKPIIDKA 669 Query: 650 --VRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSAL 691 ++ LK +GVVAGP GAA +LGLKRTTLLSRM+++GI+ Sbjct: 670 DVIKALKACHGVVAGPNGAANQLGLKRTTLLSRMQKMGINSQDF 713 >UniRef50_P71229 Hydrogenase-4 transcriptional activator n=45 Tax=Enterobacteriaceae RepID=HYFR_ECOLI Length = 670 Score = 690 bits (1781), Expect = 0.0, Method: Composition-based stats. Identities = 291/627 (46%), Positives = 393/627 (62%), Gaps = 25/627 (3%) Query: 79 LAHGPVRSILSRPDTLHCSYEEFCETW----PQLDAGGLYPK-FGHYCLMPLAAEGHIFG 133 PV+ I LH F + + A Y Y + Sbjct: 46 PPFSPVQLI-----ELHVLKSNFYYRYHDDGSDVTATTEYQGEMVDYSRHAVLLGSSGMA 100 Query: 134 GCEFIRYDDRPWSEKEFNRLQTFTQIVSVVTEQIQSRVVNNVDYELLCRERDNFRILVAI 193 FIR ++ ++ +I++ V + + V LL ++RD+ R+LV I Sbjct: 101 ELRFIRTHGSRFTSQDCTLFNWLARIITPVLQSWLNDEEQQVALRLLEKDRDHHRVLVDI 160 Query: 194 TNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNK-LNIYSTHYLDKQHPAHEQ 252 TNAVLS LD+D+L+++VA+EIH++F + +S+VL HRKN+ +++ + L H A Sbjct: 161 TNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSD-LSASHCACLP 219 Query: 253 SEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTML 312 + L + ++++ L + + L + +L N ++ L+PL G+ Sbjct: 220 RCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLTFGNHTP 279 Query: 313 GVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLN 372 G L LA +F+ N LL+ IA+R+AIAV NA A++ + L+E L EN L+EQL Sbjct: 280 GALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLL 339 Query: 373 NVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRR 432 + + G+II +S+AM +L+QV++VA+SDSTVLI GETGTGKE+IARAIH LS R ++ Sbjct: 340 S-NLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKP 398 Query: 433 MVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPK 492 +VK+NCAA+PA LLES+LFGH++GAFTGA GRFE+AD +LFLDE+GD+PLELQPK Sbjct: 399 LVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPK 458 Query: 493 LLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPL 552 LLRVLQE+E ERLG ++ I +VR+IAATNRDL +MV DR+FRSDL+YRLNVFP+ LPPL Sbjct: 459 LLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPL 518 Query: 553 RERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLT 612 R+RPEDIPLLAK FT K+AR + R ID+IP E LR L + +WPGNVRELENVIERAVLLT Sbjct: 519 RDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLT 578 Query: 613 RGNVLQLSL------------PDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVV 660 RGN L L L D L E+E Q IV+VL+ETNG+V Sbjct: 579 RGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIV 638 Query: 661 AGPKGAAQRLGLKRTTLLSRMKRLGID 687 AGP+GAA RLG+KRTTLLSRM+RLGI Sbjct: 639 AGPRGAATRLGMKRTTLLSRMQRLGIS 665 >UniRef50_D0Z425 Formate hydrogenlyase transcriptional activator n=1 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0Z425_LISDA Length = 739 Score = 681 bits (1758), Expect = 0.0, Method: Composition-based stats. Identities = 257/727 (35%), Positives = 398/727 (54%), Gaps = 64/727 (8%) Query: 14 LFDITRTLLQQPDLASLCEALSQLVKRSALADNAAIVLWQAQTQRASYYASREKDTPIKY 73 L ++ LL D++ + L+ D ++L + Y D + Sbjct: 27 LMSFSKALLSINDISGVMTFLNNEDLLFIQVDRVNLLLKNNIDDTPTLYFL---DNGNEQ 83 Query: 74 EDETVLAHGPVRSILSRPDTLH-CSYEEFCETWPQLDAGGLYPKFGHYCLMPLAAEGHIF 132 ++ H ++ + H S E +T+PQL Y YC +PL G Sbjct: 84 KNYQYNQHSLALHKIASCEYYHDISGHELYQTFPQLVDHPAYYDVNRYCKIPLLIAGKPL 143 Query: 133 GGCEFIRYD--DRPWSEKEFNRLQTFTQIVSVVTEQIQSRVVNNVDYELLCRERDNFRIL 190 G E+I + D SE++F + F +++ + E I + + + L E+ NF++L Sbjct: 144 GAIEYINHKLADSIESERQF---KLFNNMIAAMIEHIIEHQLASDFTQQLSNEKKNFQVL 200 Query: 191 VAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQHPAH 250 V ITN V+S+ EL+S + ++ +F + ++SI+ + + ++ L+ + Sbjct: 201 VDITNTVISQSTKKELISSLLHFLYQHFAMTELSIIQLQ-DNHYMQMFC--GLNNNNTEF 257 Query: 251 EQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDT 310 ++ + + ++ + +L++ ++ + + E + +++++ C++P++ Sbjct: 258 HCHFFNDDKMI-KHAIENNKPVLLDHNQLEQIRQDENG--PYFPSKVKSACIVPMVFRGL 314 Query: 311 MLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQ 370 +G + + E + ++ L++QIA RVA+A+ + A+Q R E E+ Sbjct: 315 TIGYICYMKRETLNYQQYDIELVQQIASRVALAMHSIKAHQ---ATLPRTETEQYVSIEE 371 Query: 371 LNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNN 430 + + F +II +SEAM VL++V MVA DSTVLILGE+GTGKELIARAIH +S R+ Sbjct: 372 SYDEHAIFDDIISQSEAMNQVLEKVAMVASCDSTVLILGESGTGKELIARAIHKMSLRSK 431 Query: 431 RRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQ 490 RMVKMNCAA+PAGL ES+LFGHERGAFTGA +QR+GRFE A K +LFLDE+GDMPLELQ Sbjct: 432 TRMVKMNCAAIPAGLFESELFGHERGAFTGAISQRVGRFEQAHKGTLFLDEIGDMPLELQ 491 Query: 491 PKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLP 550 PKLLR LQE E ER+G N++I DVR++ ATN DL MV ++FR+DLYYRLNVFPI +P Sbjct: 492 PKLLRALQENEIERVGKNQLISVDVRIVVATNVDLLAMVDAKQFRNDLYYRLNVFPIEVP 551 Query: 551 PLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVL 610 PLR+R EDIPLL K F ++A+++G+ I +I A L + WPGNVREL N +ER+V+ Sbjct: 552 PLRQRAEDIPLLVKHFARQLAQKMGKKITAIAASDLELMQRFSWPGNVRELHNFVERSVI 611 Query: 611 LTRGNVLQLSLPDIVLPEP---------ETPPAATVVALEGEDE---------------- 645 LTRG+VL + + +++ +P E+ + + +L+ E Sbjct: 612 LTRGHVLNIPVDELISLQPHIVQNSRKMESQASLSKTSLKQAQELPQVASIDDLTSSGSE 671 Query: 646 ---------------------YQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRL 684 +I+ LK GV+AGP GAA LGLKRTTLLSRM+++ Sbjct: 672 SVCSVDTAAKNEVKKVRPIVDQSMIINALKRCQGVIAGPNGAANMLGLKRTTLLSRMQKM 731 Query: 685 GIDKSAL 691 GI Sbjct: 732 GISSQDY 738 >UniRef50_A6EHC4 Sigma-54-dependent transcriptional regulator n=1 Tax=Pedobacter sp. BAL39 RepID=A6EHC4_9SPHI Length = 550 Score = 622 bits (1604), Expect = e-176, Method: Composition-based stats. Identities = 205/546 (37%), Positives = 323/546 (59%), Gaps = 21/546 (3%) Query: 163 VTEQIQSRVVNNVDYELLCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDD 222 ++ Q Q+R++ ++ ++ +E+++ +L++++NA+ + + +L + +++ FD D+ Sbjct: 10 LSAQDQNRMLLEINERIIRKEQES-AVLLSLSNAIATIRNKYDLFEVIDQKLKTLFDFDE 68 Query: 223 ISIVLRSHRKNKLNIYSTHYLDKQHPAHEQSEVDEAGT--------LTERVFKSKEMLLI 274 I L + K +S +++ + + A T L E + S ++ Sbjct: 69 FVICLINEDKKT---HSPFLYNQREDFRNAAGIPPASTKRYSLDDGLCEAMLASAHPIVF 125 Query: 275 NLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLR 334 + E L I+ + + + D G L + + +LL Sbjct: 126 EVEEVMQWPDPPIWLGFWQNKGIREMIGMKIFDRDECSGFFYLYAKKSNAVSNQYYSLLH 185 Query: 335 QIAERVAIAVDNALA-------YQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEA 387 I+ ++++AV N A Q+I+ K++L DE L EQ+N E++G+S A Sbjct: 186 SISLQISVAVSNIRANEKIEEQLQQINTYKQQLEDEKSYLQEQINT-RYHHSEMVGQSSA 244 Query: 388 MYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLE 447 + V +E VA SDSTVLILGETGTGKEL+AR+IHNLS R ++ M+K+NCAA+PA L+E Sbjct: 245 IRQVFDLIEQVAASDSTVLILGETGTGKELVARSIHNLSPRKDKLMIKVNCAALPANLVE 304 Query: 448 SDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGS 507 S+LFGHE+G+FTGAS +RIG+FELA +LFLDE+G++ ++Q KLLR LQE+E ER+G Sbjct: 305 SELFGHEKGSFTGASERRIGKFELAHNGTLFLDEIGELSPDIQVKLLRALQEKEIERIGG 364 Query: 508 NKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFT 567 +I+T+VR+IAATNR+L K V + FRSDLYYRLNVFPI +PPLR R EDI L+ F Sbjct: 365 KGVIKTNVRIIAATNRNLMKEVEEGNFRSDLYYRLNVFPITIPPLRNRKEDIQALSAHFI 424 Query: 568 FKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVL-QLSLPDIVL 626 +A++ GR + + L+TL WPGN+RELE++IER++LL+RGN++ ++ LP + Sbjct: 425 QHLAKKTGRQVKGMTKGVLKTLQEYPWPGNIRELEHLIERSILLSRGNIINEVHLPKVEH 484 Query: 627 PEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 E T + E+E I+ +LK G ++G GAA+ L + TTL S++K+ I Sbjct: 485 MEDLTSNKEIRIKTIFENERDHILNILKLCKGKISGNGGAAELLSIPATTLNSKIKKFNI 544 Query: 687 DKSALI 692 K +I Sbjct: 545 KKEHVI 550 >UniRef50_A7HFP7 Transcriptional regulator, NifA subfamily, Fis Family n=2 Tax=Myxococcaceae RepID=A7HFP7_ANADF Length = 674 Score = 621 bits (1602), Expect = e-176, Method: Composition-based stats. Identities = 239/538 (44%), Positives = 333/538 (61%), Gaps = 14/538 (2%) Query: 163 VTEQIQSRVVNNVDYELLCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDD 222 + E I R+ + L ER+ R+L+ + +++ LD+ E+ +A + D Sbjct: 141 LVEDITERMRL---RDELDAERNRLRLLLDVNELLVAHLDLREMFQALASSLRRVTDCHF 197 Query: 223 ISIVLRSHRKNKLNIYSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDL 282 I + L +L + + D + E + G+ + + F++ +L+N E + Sbjct: 198 IGLALPDAATGELRQHIVDHPDGKGAITEGMVLPLHGSASGKAFRTGAPVLLNDPEANRQ 257 Query: 283 APY-------ERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQ 335 P R + + +LPL+ +LGVL+L + + F + + + Sbjct: 258 DPDLYGTPEGARFYRTVLEEGVPSGYVLPLVHRGEVLGVLQLKKYADARFKEREIEFMSK 317 Query: 336 IAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQV 395 +A +++IAV NAL Y+E+ KERL E + L E++ + +F EIIG S + VL Q+ Sbjct: 318 VAGQLSIAVANALEYREVKESKERLDRERVYLKEEIRSAH-DFEEIIGVSRTLKQVLGQI 376 Query: 396 EMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHER 455 + VA +DSTVLILGETGTGKELIARAIHN S R +R VK+NC+A+P GLLES+LFGHER Sbjct: 377 DTVAVTDSTVLILGETGTGKELIARAIHNRSRRRDRPFVKVNCSAIPTGLLESELFGHER 436 Query: 456 GAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDV 515 GAFTGA+A RIGRFE AD+ +LFLDE+GD+P++LQPKLLRVLQE+EFERLG+++ + DV Sbjct: 437 GAFTGATAPRIGRFEAADQGTLFLDEIGDLPVDLQPKLLRVLQEREFERLGASRTRRVDV 496 Query: 516 RLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLG 575 R++AATNR L MV + FR DLYYRLNVFPI LPPLRER DIPLL + F ARR+G Sbjct: 497 RVVAATNRGLATMVGEGRFREDLYYRLNVFPITLPPLRERAGDIPLLVRHFVGVYARRMG 556 Query: 576 RNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAA 635 + ID IP ++R L WPGNVREL+NVIERAV+LT G VL+L+L + E P A Sbjct: 557 KQIDHIPDASMRALVGYHWPGNVRELQNVIERAVILTPGAVLELALAERAAGAREDRPDA 616 Query: 636 TVVA---LEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSA 690 E E + I+ L+E V+ GP GAA RLGL+RT+L+ RM++LGI + Sbjct: 617 AAPNGHRTLQEVEREHILGALQEAKWVIGGPNGAAARLGLRRTSLMYRMEKLGIARPT 674 >UniRef50_C1F0X6 Sigma-54 dependent transcriptional regulator, Fis family n=3 Tax=Bacteria RepID=C1F0X6_ACIC5 Length = 781 Score = 613 bits (1581), Expect = e-174, Method: Composition-based stats. Identities = 235/555 (42%), Positives = 329/555 (59%), Gaps = 8/555 (1%) Query: 139 RYDDRPWS-EKEFNRLQTFTQIVSVVTEQIQSRVVNNVDYELLCRERDNFRILVAITNAV 197 RY+D W K+ +R I ++ +Q Q + + +L R R +L ++ +V Sbjct: 234 RYEDEGWRIRKDGSRFWANVLITALYDQQRQIIGYSKLTRDLTERRRAEEALLAELSVSV 293 Query: 198 LSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQHPAHEQSEVDE 257 L L + +++ VA + D SI L KN L+ Y P E S E Sbjct: 294 LPGLKIQQMLHAVASSMQRIVAHDYASITLLDQSKNVLHSYILSAAGDSGPEMELSVAPE 353 Query: 258 AGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKL 317 + + + + L +L D + + L + I LPL+ + G L + Sbjct: 354 SSPEAAVLHTHEALFLPSL---QDSSFPQDALRHALSSGIHAAWWLPLVHEGRVAGALCI 410 Query: 318 AQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSE 377 K + + L Q+A ++A+ + A +++ ++L +E L E+L + Sbjct: 411 GVRNPKTLEHVSRHTLTQMAAQIALTIQGINAARQLSAQTQKLKEEKRYLEEELRT-EYS 469 Query: 378 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMN 437 F EI+G E++ VLKQVE VA +D+T LILGETGTGKELIARAIHNLS R+ VK+N Sbjct: 470 FEEIVGNGESLRRVLKQVETVAPTDATTLILGETGTGKELIARAIHNLSARDGHTFVKVN 529 Query: 438 CAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVL 497 C+++P GLLES+LFGHE+GAFTGA QRIGR ELA + +LFLDE+GD+PL+LQPKLLR L Sbjct: 530 CSSIPTGLLESELFGHEKGAFTGAIQQRIGRLELAHQGTLFLDEIGDLPLDLQPKLLRAL 589 Query: 498 QEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPE 557 QE+E ERLG + I D RL+AAT+RDL +MV D +FRSDLYYRL VFPI LPPLR+R E Sbjct: 590 QEKEIERLGGRRTIPVDFRLLAATHRDLARMVKDGQFRSDLYYRLKVFPILLPPLRQRRE 649 Query: 558 DIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVL 617 DIP L F K ARR+ ++I+ IP + L WPGN+RELEN +ERAV+LTRG +L Sbjct: 650 DIPELVNYFVAKHARRMNKHIEEIPEPVMSALVRWHWPGNIRELENFLERAVILTRGPLL 709 Query: 618 QLSLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTL 677 + L ++ ET + + E I++VL++ +GV+AG GAA+RLGLKRTTL Sbjct: 710 RAPLSELQELNIETDEPQSTLEA---AERAHILQVLRDCDGVIAGAGGAAERLGLKRTTL 766 Query: 678 LSRMKRLGIDKSALI 692 SRMK+LGI++ + Sbjct: 767 NSRMKKLGIERREYL 781 >UniRef50_Q1ZGP7 Formate hydrogen-lyase transcriptional activator n=1 Tax=Psychromonas sp. CNPT3 RepID=Q1ZGP7_9GAMM Length = 766 Score = 607 bits (1565), Expect = e-172, Method: Composition-based stats. Identities = 265/725 (36%), Positives = 395/725 (54%), Gaps = 59/725 (8%) Query: 21 LLQQPDLASLCEALSQLVKRSALADNAAIVLWQAQTQRASYYASREKDTPIKYEDETVLA 80 L +L L + L+ L + + ++++ A + + E + Sbjct: 48 LCTANNLQELVKKLNTLSAITESLQSVHLLIYHADKKNHILFYPEENKVNSLQLGRLEID 107 Query: 81 HGPVRSILSRPDTLHCSYEEFCETWPQLDAGGLYPKFGHYCLMPLAAEGHIFGGCEFIRY 140 P +L + + F + + + +PL+A G E + Sbjct: 108 PKPNGVLLVKKYQ-TYDKKTFTDKFNDYSHLKNFSNAHSIYHVPLSAFNRYIGKIEVVNI 166 Query: 141 DDRPWSEKEFNRLQTFTQIVSVVTEQIQSRVVNN----------------VDYEL----- 179 S + L+ + +VS+V +I +N+ V+ Sbjct: 167 AP--LSASGISDLEQISTVVSLVLAKIFDGNLNHHYGFQDELLGYAKPLSVEENRADVDA 224 Query: 180 -LCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIY 238 L + +LV +T AV+ +++ + L + + + +F I+ ISI+ S L+ + Sbjct: 225 ALEGNSLHNHVLVEVTEAVIGQVNFEGLATVLFLHLQEHFGIEFISIMSFSSDSESLSCH 284 Query: 239 STHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTW-GNQI 297 + + + +S+ +A T+ E V +SK+ L ++ + L + D + +++ Sbjct: 285 EVNQGKEGKAQYIESQKPKAKTMEEHVIQSKKTLQLSRSDYPLLKHKFLHVDDHYMSHKL 344 Query: 298 QTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLK 357 + C+ PL+ +LGV+K EK F+ L+LL+QIA R+++A++ +Q + Sbjct: 345 SSECVFPLLFRQQVLGVIKYGHRAEKYFSEERLDLLKQIAARISVAIN---YFQNSSKFM 401 Query: 358 ERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKEL 417 + ++L ++ + FG II +S+AM V ++V MVA DSTVLILGETGTGKE+ Sbjct: 402 MKSTPKDLMSVDKTEQSKAMFGGIISQSKAMREVFQRVLMVADCDSTVLILGETGTGKEM 461 Query: 418 IARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSL 477 IA IHN S R++++MVKMNC+A+P+GL ESDLFGH +GAFTGA Q++GRFE A KSS Sbjct: 462 IANMIHNASNRSHKKMVKMNCSAVPSGLFESDLFGHVKGAFTGAVNQQVGRFEEAHKSSF 521 Query: 478 FLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSD 537 FLDE+GDMPL+LQPK+LR LQE E ER+G + II DVR+IAAT+ DL MV D FR D Sbjct: 522 FLDEIGDMPLQLQPKVLRALQEGEIERVGKHTIIPVDVRMIAATHCDLLSMVKDNSFRRD 581 Query: 538 LYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGN 597 LYYRLNVFPI +PPLRER EDIPLLAK FT ++++ R+I SI ETLR L ++ WPGN Sbjct: 582 LYYRLNVFPIRIPPLRERREDIPLLAKHFTQLFSKKMNRDIQSISPETLRILYSLPWPGN 641 Query: 598 VRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAA---------------------- 635 VREL+NVIERAV++ +G VL L + ++ P+ P+ Sbjct: 642 VRELKNVIERAVIMNKGQVLHLPMSELKEYFPDIDPSPLCVQDGTKKEAGCFPDTVDLYG 701 Query: 636 --------TVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 + V E + I++VLKETNG+VAGPKGAA RLGLKRTTLLSRM+RLGI Sbjct: 702 ENTIPKNVSAVKSVKSMEREQIIKVLKETNGIVAGPKGAAHRLGLKRTTLLSRMQRLGIT 761 Query: 688 KSALI 692 + LI Sbjct: 762 SNDLI 766 >UniRef50_P12626 Nitrogen fixation protein anfA n=11 Tax=Bacteria RepID=ANFA_AZOVI Length = 533 Score = 599 bits (1546), Expect = e-169, Method: Composition-based stats. Identities = 185/508 (36%), Positives = 270/508 (53%), Gaps = 16/508 (3%) Query: 189 ILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQHP 248 IL I+ + D+ + +S V + + + + L R + I+ + L ++ Sbjct: 33 ILYKISQIITGNADLADALSIVLGVMQQHLKMQRGIVTLYDMRAETIFIHDSFGLTEEEK 92 Query: 249 AHEQSEVDEAGTLTERVFKSKEMLLIN-LHERDDLAPYERMLFDTWGNQIQTLCLLPLMS 307 V E +T +V ++ + ++ L E D R+ + G +P+M Sbjct: 93 KRGIYAVGEG--ITGKVVETGKAIVARRLQEHPDFLGRTRVSRN--GKAKAAFFCVPIMR 148 Query: 308 GDTMLGVLKLAQCE-EKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLA 366 +LG + + ++ LL IA +A V+ L + I R+ RL +EN Sbjct: 149 AQKVLGTIAAERVYMNPRLLKQDVELLTMIATMIAPLVELYL-IENIERV--RLENENRR 205 Query: 367 LTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS 426 L L + IIG S+ M V + + VA + +TVLILGE+G GKEL+A AIH S Sbjct: 206 LKHALKE-RFKPSNIIGNSKPMQEVYELIHKVASTKATVLILGESGVGKELVANAIHYNS 264 Query: 427 GRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMP 486 +V NCA +P L ES+LFGHE+G+FTGA G FE AD ++FLDEVG++ Sbjct: 265 PNAEAALVTSNCAPLPENLAESELFGHEKGSFTGALTMHKGCFEQADGGTIFLDEVGELS 324 Query: 487 LELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFP 546 +Q KL+RVLQ + FER+G +K ++ DVR+IAATNR+L +MV FR DLYYRLNVFP Sbjct: 325 PTVQAKLVRVLQNRTFERVGGSKPVKVDVRIIAATNRNLVEMVEQGTFREDLYYRLNVFP 384 Query: 547 IHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIE 606 I +PPLRER D+ LA F +R G+N+ I L L + WPGNVRELENV+E Sbjct: 385 ITVPPLRERGSDVIALADHFVSAFSRENGKNVKRISTPALNMLMSYHWPGNVRELENVME 444 Query: 607 RAVLLTRGNVLQ-LSLPDIVLPEPETPPAATVVALE--GEDEYQLIVRVLKETNGVVAGP 663 RAV+L+ +V+ +LP + E+ A + E E ++IV LK ++G + Sbjct: 445 RAVILSDDDVIHSYNLPPSLQTSKESGTAFGLTLEEKIKAVECEMIVEALKNSSGHIG-- 502 Query: 664 KGAAQRLGLKRTTLLSRMKRLGIDKSAL 691 AA+ LGL R L RM+R GI + Sbjct: 503 -EAAKELGLARRMLGVRMERYGISYKSF 529 >UniRef50_B3U4Q6 Nif-specific regulatory protein n=3 Tax=Bacteria RepID=B3U4Q6_9BACT Length = 517 Score = 599 bits (1545), Expect = e-169, Method: Composition-based stats. Identities = 197/515 (38%), Positives = 304/515 (59%), Gaps = 8/515 (1%) Query: 180 LCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYS 239 + R NF L+ +TNA+ S+ D+D L +A +I D I L + + Y+ Sbjct: 1 MQRATLNFETLLEVTNALNSQRDIDSLWRVIADQIRKVIPWDRAGITLYESQTDSFRFYA 60 Query: 240 THYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTW--GNQI 297 S + G+ V ++ LH R+DL + L D + + Sbjct: 61 VITNMATPALAHDSVIPREGSAVGWVHDNR-----RLHIREDLQKEQVFLEDRYYVQEGL 115 Query: 298 QTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLK 357 + +PL+ D LG L + + + L+Q+A ++A A+D+ LAY++I +L Sbjct: 116 GRMINMPLLVRDHCLGTLNIGSVQTGHLDQDDCKFLQQVATQIAYAIDHVLAYEQIQQLS 175 Query: 358 ERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKEL 417 +RL EN L E++ ++G S + V+ ++ VA +D+TVL+LGETGTGKE+ Sbjct: 176 DRLRRENEYLAEEV-KASRNLRLVVGTSSSFRKVVDLLKAVAPTDTTVLLLGETGTGKEV 234 Query: 418 IARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSL 477 +A+A+H+LS R ++ +++NCAA+P+GL+ES+LFGHERGAFTGA +R GRFELA +L Sbjct: 235 LAQALHDLSLRCHKPFIRVNCAALPSGLIESELFGHERGAFTGAQLRRAGRFELAHTGTL 294 Query: 478 FLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSD 537 FLDE+G+MPLE Q KLLRVLQ+ +R+G + + DVRL+AATN DL+ V FR+D Sbjct: 295 FLDEIGEMPLETQAKLLRVLQDGMVDRIGGTQPVAVDVRLVAATNADLQAAVRQGTFRAD 354 Query: 538 LYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGN 597 L+YRL++FPI LPPLR+R EDI LLA+ F I +L R + +++ L WPGN Sbjct: 355 LFYRLHIFPIALPPLRDRREDIHLLAQHFLALIGGKLKRAHLAFDPQSMARLLTYNWPGN 414 Query: 598 VRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETN 657 VREL+NVIERAV+L+ + + + + + + P++++ G+ E I+ VL++T Sbjct: 415 VRELQNVIERAVILSGSSQVTVDEMLLPVVQAVHSPSSSLPVSLGDLERYHIIEVLEQTK 474 Query: 658 GVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSALI 692 + G +GAA LGL TL SR+++LG+ + + I Sbjct: 475 WRIYGEQGAAHLLGLNPETLRSRLRKLGLRRPSSI 509 Score = 75.6 bits (185), Expect = 6e-12, Method: Composition-based stats. Identities = 56/354 (15%), Positives = 110/354 (31%), Gaps = 19/354 (5%) Query: 12 QGLFDITRTLLQQPDLASLCEALSQLVKRSALADNAAIVLWQAQTQRASYYAS-REKDTP 70 + L ++T L Q D+ SL ++ +++ D A I L+++QT +YA TP Sbjct: 9 ETLLEVTNALNSQRDIDSLWRVIADQIRKVIPWDRAGITLYESQTDSFRFYAVITNMATP 68 Query: 71 IKYEDETVLAHGPVRSILSRPDTLHCSYEEFCETWPQLDAGGLYPKFGHYCLMPLAAEGH 130 D + G + LH + E D + G MPL H Sbjct: 69 ALAHDSVIPREGSAVGWVHDNRRLHIREDLQKEQVFLEDRYYVQEGLGRMINMPLLVRDH 128 Query: 131 IFGGCEFIRYDDRPWSEKEFNRLQTFTQIVSVVTEQIQSRVVNNVDYELLCRERDNFRIL 190 G + + LQ ++ + + + + L RE + Sbjct: 129 CLGTLNIGSVQTGHLDQDDCKFLQQVATQIAYAIDHVLAYEQIQQLSDRLRRENEYLAEE 188 Query: 191 VAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNI-YSTHYLD----K 245 V + + + +V + D ++L K + + H L K Sbjct: 189 VKASRNLRLVVGTSSSFRKVVDLLKAVAPTDTTVLLLGETGTGKEVLAQALHDLSLRCHK 248 Query: 246 QHPAHEQSEVDEAGTLTERVFKSKEMLL---INLHERDDLAPYERMLFDTWGNQIQTLCL 302 + + +E + + R +LA + D G Sbjct: 249 PFIRVNCAALPSGLIESELFGHERGAFTGAQLRRAGRFELAHTGTLFLDEIGE------- 301 Query: 303 LPLMSGDTMLGVLK---LAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEI 353 +PL + +L VL+ + + ++ L+ + AV ++ Sbjct: 302 MPLETQAKLLRVLQDGMVDRIGGTQPVAVDVRLVAATNADLQAAVRQGTFRADL 355 >UniRef50_C7PQF6 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PQF6_CHIPD Length = 1082 Score = 597 bits (1539), Expect = e-169, Method: Composition-based stats. Identities = 213/589 (36%), Positives = 328/589 (55%), Gaps = 22/589 (3%) Query: 116 KFGHYCLMPLAAEGHIFGGCEFIRYDDRPWSEKEFNRLQTFTQIVSVVTEQIQSRVVNNV 175 + L +FGG + + +S + ++ F+ +S + + Sbjct: 495 GINEIAGVRLMHNNEVFGGMTLLAENINSFSADDMRLIERFSYHLSGLVANML------- 547 Query: 176 DYELLCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKL 235 E + + IL++ + + + L++ + + + F +DI++ + + K Sbjct: 548 ANEAIQQREKEKEILLSFSADIARTRGAEALIAVMRQRLKSIFHFNDITVGIFNAEKTAF 607 Query: 236 NIYSTHYLD-----KQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHER-DDLAPYERML 289 + + + +E A + + + S + L + + Sbjct: 608 KVLVADVEERRTSHPEFKEIAFAEYPIADGIHDMLLHSDKPELFYIENLLMKNPGRHPGI 667 Query: 290 FDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALA 349 + I+ + + L++ + +G + + E F +L+LL+ I+++VA+AV N LA Sbjct: 668 QFIFERGIKEIAGVKLVNQNEDIGFITMLSEERNSFRHRDLHLLKGISDQVAVAVANILA 727 Query: 350 -------YQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSD 402 +EI+ KE+L +E L L +++++V +IIG M V + V+ + Sbjct: 728 DEKIGQQLKEINGYKEKLEEEKLYLQQEISSV-YTHTDIIGAGPEMQRVFHMLSQVSFAQ 786 Query: 403 STVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGAS 462 STVLILGETGTGKELIARAIHN S R N+ MVK+NCAA+PA L+ES+LFGHERG+FTGA Sbjct: 787 STVLILGETGTGKELIARAIHNGSPRKNKLMVKVNCAALPANLIESELFGHERGSFTGAI 846 Query: 463 AQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATN 522 +RIG+FELA+ +LFLDE+G+MPL+LQ KLLR +QE+E ER+G I+TDVR+IAATN Sbjct: 847 ERRIGKFELANHGTLFLDEIGEMPLDLQVKLLRAIQEREIERIGGKSTIKTDVRIIAATN 906 Query: 523 RDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIP 582 R+L+K VA+ FRSDLYYRLNVFPI LPPLR+R EDI LLA F + AR GR + Sbjct: 907 RNLQKEVAEGRFRSDLYYRLNVFPIVLPPLRDRKEDISLLAAHFIERFARSTGRKNIKLS 966 Query: 583 AETLRTLSNMEWPGNVRELENVIERAVLLTRGNVL-QLSLPDIVLPEPETPPAATVVALE 641 + ++ L+ WPGNVRELE+V+ER++LLT+GN++ ++ L E + Sbjct: 967 STAMKQLTAYNWPGNVRELEHVLERSILLTQGNIIREIHLSSQPKSEAKVRQEEDFSRTL 1026 Query: 642 GEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSA 690 E E I+ VL + G + GP GAA+ LGL +TL R+++LGI K Sbjct: 1027 DEMERDYILGVLNKCKGKIFGPGGAAEILGLHVSTLNHRIRKLGIQKEH 1075 >UniRef50_B3Q676 Transcriptional regulator, NifA subfamily, Fis Family n=9 Tax=Bacteria RepID=B3Q676_RHOPT Length = 561 Score = 596 bits (1536), Expect = e-168, Method: Composition-based stats. Identities = 182/514 (35%), Positives = 265/514 (51%), Gaps = 14/514 (2%) Query: 183 ERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHY 242 + +IL I + D+ LVS + + + ++L + + I+ + Sbjct: 48 RVNVLQILFRINQVLTQNADLATLVSIILDGMRQQMRMQRGVMMLYDRHSDAIFIHDSFG 107 Query: 243 LDKQHPAHEQSEVDEAGTLTERVFKSKEMLLI-NLHERDDLAPYERMLFDTWGNQIQTLC 301 L ++ E +T +V ++ + ++I + + D R Sbjct: 108 LTEEERGRGIYAPGEG--ITGKVVETGKPIIIPRVIDSPDFLDRTRAHNKGRKQDKLAFF 165 Query: 302 LLPLMSGDTMLGVLKLAQCE-EKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERL 360 +P++ +LG + + + + LL +A +A AV+ L + + ++ RL Sbjct: 166 CVPIVLAQKVLGTICAERVYMNQRLLNQDAELLAMVASLIAPAVELYL-IENVDKV--RL 222 Query: 361 VDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIAR 420 EN L +L IIG S+ M V V VA + +TVL+LGE+G GKEL+A Sbjct: 223 ETENRRLKSELKQ-RFRPANIIGNSKPMQEVYAMVHKVASTKATVLLLGESGVGKELVAS 281 Query: 421 AIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLD 480 A+H S + +K NCAA+P L ES+LFGHERGAFT A A G FE A ++FLD Sbjct: 282 ALHYNSPVADGPFIKANCAALPEALAESELFGHERGAFTSAIATHKGYFEQASGGTIFLD 341 Query: 481 EVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYY 540 EVG++ L Q KLLRVLQE+ FER+G K ++ DVR+IAATNR+L +MVA+ FR DL+Y Sbjct: 342 EVGELSLPTQAKLLRVLQERTFERVGGAKPVKVDVRIIAATNRNLAEMVAEGTFREDLFY 401 Query: 541 RLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRE 600 RLNVFPI +PPLR+R D+ LA F + +G+ I I + L + WPGNVRE Sbjct: 402 RLNVFPITIPPLRDRGSDVITLADHFVTTYSAEIGKPIKRISTPAINMLMSYHWPGNVRE 461 Query: 601 LENVIERAVLLTRGNVLQ-LSLPDIVLPEPETPP--AATVVALEGEDEYQLIVRVLKETN 657 LENVIER+V+L V+ LP + ET + T+ EY++IV LK +N Sbjct: 462 LENVIERSVILAEEGVIHGYDLPPSLQTPTETGTGFSGTLEDRVTAVEYEMIVEALKASN 521 Query: 658 GVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSAL 691 G V AA LGL R L RM+R G+ Sbjct: 522 GNVG---QAATTLGLTRRMLGLRMERHGLTYKTF 552 >UniRef50_B0SC18 Transcriptional regulator n=7 Tax=Bacteria RepID=B0SC18_LEPBA Length = 705 Score = 595 bits (1534), Expect = e-168, Method: Composition-based stats. Identities = 198/605 (32%), Positives = 307/605 (50%), Gaps = 58/605 (9%) Query: 124 PLAAEGHIFGGCEFIRYDDRPWSEKEFNRLQTFTQIVSVVTEQIQSRVVNNVDYELLCRE 183 P+ E I G ++ + +IVSV+ Q ++ N+ + Sbjct: 117 PMIVEDDIIGVISLDSNRLNAFTPEML-------EIVSVLANQA-GQIFKNLQTIRSLEQ 168 Query: 184 RDNFR-ILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHY 242 R + L+ I+ V S LD +E+ + + ++ SIVL + + L I + Sbjct: 169 RTKIQATLIEISKVVSSTLDQNEVFDSIMVTMEKSLRLEKGSIVLFNKEEALLRIVAASG 228 Query: 243 LDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQ--TL 300 L + + E +T +V++S E ++I + + +L Sbjct: 229 LSPEEIEKGTYQPGEG--ITGKVYESGEPIIIESVASHPDFLNRVGYLSHFKHDPHNVSL 286 Query: 301 CLLPLMSGDTMLGVLKLAQCEEKVFTTTN-LNLLRQIAERVAIAVDNALAYQEIHRLKER 359 P++S T LGV+ + K + L+ L+ +A ++ ++ +E K+ Sbjct: 287 LCAPILSEQTTLGVVNAFIVQNKHTDLKSFLDFLQVVASIISQSIKIQNLVEE---AKKE 343 Query: 360 LVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIA 419 + EN+ L +L N +FG +IG++ +M + +++++VA S ++VLI GE+GTGKE+IA Sbjct: 344 ISRENIQLKRELKN-KYKFGSLIGKAASMEKMFEKIQLVADSRASVLITGESGTGKEMIA 402 Query: 420 RAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFL 479 AIH S R+ VK+NCAA+P LLES+LFGH++G+FTGA + G+FELAD ++FL Sbjct: 403 NAIHYNSSRSENPFVKINCAAIPENLLESELFGHKKGSFTGAVTDKKGKFELADTGTIFL 462 Query: 480 DEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLY 539 DE+G+M L LQ KLLRVLQE+E E +GS K + DVR+IAATN +L+++VA+++FR+DL+ Sbjct: 463 DEIGEMDLNLQSKLLRVLQEREIEAIGSTKAKKVDVRIIAATNAELEQLVAEKKFRADLF 522 Query: 540 YRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVR 599 YRLNV I+ PPLR+R EDIPLL F K + ++I I E R L WPGNVR Sbjct: 523 YRLNVVKINTPPLRDRVEDIPLLMNHFLEKYTKDNNKSIKGISREASRLLLKYRWPGNVR 582 Query: 600 ELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVA-------------------- 639 ELENVIERAV+L + +L +L E P TV Sbjct: 583 ELENVIERAVVLAQDEILNEEDFSDILSNMEEMPDNTVEVSHSNHVESVSGAEPLDLGSG 642 Query: 640 -----------------LEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMK 682 + E E +LI +K+ A+ LG+ R TL ++K Sbjct: 643 RLTSGQLDGLDGRAMEIVVSEVESRLIQYAMKKFR---YTKTRVAKFLGINRNTLDKKIK 699 Query: 683 RLGID 687 L I+ Sbjct: 700 ELNIE 704 Score = 67.5 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 24/169 (14%), Positives = 68/169 (40%), Gaps = 9/169 (5%) Query: 187 FRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQ 246 + + + A+ S D D L+ + ++ S++L +++ L+ ++ +++Q Sbjct: 9 IQSIHEVATAMNSTQDPDGLLELILDRCIQICAVESGSLMLIDEKQSVLDAVTSRGMNQQ 68 Query: 247 HPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLM 306 + ++ + +T + + L+N +D +I++ + P++ Sbjct: 69 LLRETKLKIGQG--ITGMAASTGKAKLVNDVSKDPDYI-------QVKEEIKSELVAPMI 119 Query: 307 SGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHR 355 D ++GV+ L FT L ++ +A + N + + + Sbjct: 120 VEDDIIGVISLDSNRLNAFTPEMLEIVSVLANQAGQIFKNLQTIRSLEQ 168 >UniRef50_P27713 Nif-specific regulatory protein n=3 Tax=Burkholderiales RepID=NIFA_HERSE Length = 542 Score = 592 bits (1526), Expect = e-167, Method: Composition-based stats. Identities = 173/537 (32%), Positives = 275/537 (51%), Gaps = 44/537 (8%) Query: 189 ILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQHP 248 + I+ + S LD+ + + EV + + + + + L +L + S L + Sbjct: 16 TIYEISKILGSSLDLSKTLREVLNVLSAHLETKRVLLSLMQ-DSGELQLVSAIGLSYEEF 74 Query: 249 AHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSG 308 + V E +T ++F+++ +++ ++ L + ++ + +P+ + Sbjct: 75 QSGRYRVGEG--ITGKIFQTETPIVVRDLAQEPLFLARTSPRQSQDGEVISFVGVPIKAA 132 Query: 309 DTMLGVLKLAQCEEKVFTTTN--LNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLA 366 MLGVL + + + + + + LL +A + V Y+ + +++L +E Sbjct: 133 REMLGVLCVFRDGQSPSRSVDHEVRLLTMVANLIGQTV---RLYRSVAAERQQLQEEKRQ 189 Query: 367 LTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS 426 L+ QL + +IG S+AM V QV A S ST+L+ GE+GTGKE+IARAIH LS Sbjct: 190 LSRQLQG-KYKLDNVIGISKAMQEVFAQVHQSAPSRSTMLLRGESGTGKEVIARAIHYLS 248 Query: 427 GRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMP 486 R + +K+NCAA+ LLES+LFGHE+GAFTGA +R GRFELA +LFLDE+G++ Sbjct: 249 PRKDGPFIKVNCAALSETLLESELFGHEKGAFTGAQGERKGRFELAHGGTLFLDEIGEIS 308 Query: 487 LELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFP 546 Q KLLRVLQE+EFER+G ++ I+ DVRL+ ATNRDL+K VA EFR+DLYYR+NV Sbjct: 309 PAFQAKLLRVLQEREFERVGGSRSIKVDVRLVTATNRDLEKAVAKGEFRADLYYRINVVS 368 Query: 547 IHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIE 606 I +PPLRER EDIP L + F K R + ++ + ++ + N WPGNVRELEN +E Sbjct: 369 IFIPPLRERREDIPYLVEHFLEKFRVENQRAMVAMSPQAMKVMMNCYWPGNVRELENCVE 428 Query: 607 RAVLLTRGNVLQ---------------LSLPDIVLPEPETP-----------------PA 634 R + RG+++ L P P P Sbjct: 429 RTATMMRGDLITEVHFSCQQNKCLTKVLHEPGQQQPVVVVPLERISAPYGAIFAEWDGQG 488 Query: 635 ATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSAL 691 A E + ++ +++ V A AA+ L + + +++ I+ Sbjct: 489 QATGAAPPTSERERLIWAMEQCGWVQA---KAARALNISPRQMGYALQKFNIEVKKF 542 >UniRef50_Q1NW39 Nif-specific regulatory protein n=2 Tax=Deltaproteobacteria RepID=Q1NW39_9DELT Length = 541 Score = 591 bits (1523), Expect = e-167, Method: Composition-based stats. Identities = 179/526 (34%), Positives = 274/526 (52%), Gaps = 34/526 (6%) Query: 186 NFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDK 245 + L I+ + S LD+ + ++E +H ++ ++VL +L I +++ L Sbjct: 14 ELQALYQISQLIGSALDISKTLNETLGVLHETLRMERATLVLEECDSGRLTIVASYGLSP 73 Query: 246 QHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPL 305 A +E + R+F S ++ R+ L + +P+ Sbjct: 74 AEIARGIYRPEEG--VIGRIFASAYPFVVPDVHREPLFLNRTRARTNLPKGEISFIGVPV 131 Query: 306 MSGDTMLGVLKLAQ-CEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDEN 364 M + +GVL + + ++ ++ L +A + ++ + ++ L +EN Sbjct: 132 MLAENPVGVLSVDRLFGPEISFEEDIRFLTVVATMIGQFLNLQRTFASSQQV---LREEN 188 Query: 365 LALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHN 424 L +L + + + IIG+ + + V + VA S +T L+LGE+GTGKEL+ARAIH Sbjct: 189 SQLRRKLQDRFNRY-NIIGQCKRIQEVYDYIAKVAPSRATALLLGESGTGKELVARAIHQ 247 Query: 425 LSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGD 484 R +K+NCAA+P LLES+L GHE+GAFTGA Q+ GRFELAD +LFLDE+G+ Sbjct: 248 AGPRAGEPFIKLNCAALPENLLESELLGHEKGAFTGAVGQKKGRFELADGGTLFLDEIGE 307 Query: 485 MPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNV 544 +PL LQ KLLRVLQE+ FERLG ++ I DVR+IAATNR L+ V + FR+DLYYRLNV Sbjct: 308 LPLALQAKLLRVLQERTFERLGGSRTIAVDVRIIAATNRSLEAGVEEGVFRADLYYRLNV 367 Query: 545 FPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENV 604 P+ LPPLRER EDIPLL F + R R + A +R L+ WPGNVREL+N+ Sbjct: 368 VPVVLPPLRERREDIPLLLDHFLRESNRHNRRRVK-FAAAVIRRLNEYSWPGNVRELQNL 426 Query: 605 IERAVLLTRGNVLQLSLPDIVLPEPE-----------TPPAATVVALE------------ 641 +ER V++ G V+ L L +P+ PAA + A Sbjct: 427 VERLVIMVDGEVVNLDDLPAYLADPDPANRRCPRGFADQPAAVLPAPSWVDQGMAAGRSL 486 Query: 642 GEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 E E + ++ L+ V AA+ LG+ + R+++ I+ Sbjct: 487 WEMEKEEVLAALRRHGWV---QTRAARDLGITPRQMGYRIRKYAIE 529 >UniRef50_UPI00016C3921 transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C3921 Length = 527 Score = 588 bits (1517), Expect = e-166, Method: Composition-based stats. Identities = 224/511 (43%), Positives = 304/511 (59%), Gaps = 24/511 (4%) Query: 200 RLDMDELVSEVAKEIHYYFDIDDISIVLRSHRK--NKLNIYSTHYLDK-QHPAHEQSEVD 256 D+ L+ ++++ + + +S L KL A +E+ Sbjct: 12 HTDLAALLRDLSQALGPHLPRGYLSFALLEPHSHAGKLQFLEPVGGGPAPKSADTPTELP 71 Query: 257 EAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLK 316 + T V+ ++E L +++ D P R F G ++ C +PL + LG + Sbjct: 72 AGESPTAHVWDTQEPLWLDVTA-DGRFPVLRTAFAKQG--VRCACFVPLTTPRRKLGAMA 128 Query: 317 LAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDS 376 ++N Q+ VA+AV+ AL QE+ R RL E L L E++ D Sbjct: 129 FTSYLPVSPAPDDINFTLQVGRLVALAVEGALTRQELERANARLAAEKLYLEEEIR-ADR 187 Query: 377 EFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKM 436 E++G S + VLKQVE+VA +DS VL+ GETGTGKEL+ARA+H LS R+ R VK+ Sbjct: 188 RMHEVVGDSRTLQEVLKQVEVVAPTDSAVLVTGETGTGKELVARAVHRLSARSERTFVKL 247 Query: 437 NCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRV 496 NCAA+P GLLES+LFGHE+GAFTGA +R+GRFELAD +LFLDEVGD+P ELQPKLLRV Sbjct: 248 NCAAIPTGLLESELFGHEKGAFTGAVERRLGRFELADGGTLFLDEVGDIPQELQPKLLRV 307 Query: 497 LQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERP 556 LQEQEFERLGS K ++ +VRL+AAT+R+L K+VA+ +FRSDLYYRL+VFP+HLP LR+R Sbjct: 308 LQEQEFERLGSAKTVKVNVRLVAATHRNLAKLVAEGKFRSDLYYRLHVFPVHLPALRDRR 367 Query: 557 EDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNV 616 EDIP L + F A+R G+ I++IPAE + L WPGNVREL+++IERAV+LT G+ Sbjct: 368 EDIPSLVRHFVALFAQRFGKRIETIPAEAMAALERYAWPGNVRELQHLIERAVILTTGSE 427 Query: 617 LQLSLPDIVLPEPETPPAATVV-----------------ALEGEDEYQLIVRVLKETNGV 659 L++ L ++ E P E E LI R L V Sbjct: 428 LRVPLGELTPTTAEPPSHPRPAVALTIPPTSPAEPPPQFNALRESERDLIRRALDRCGWV 487 Query: 660 VAGPKGAAQRLGLKRTTLLSRMKRLGIDKSA 690 + GP GAA +LGLKRTTLLSRMK+LG+ + Sbjct: 488 IGGPNGAAAQLGLKRTTLLSRMKKLGLTRDG 518 Score = 57.5 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 32/226 (14%), Positives = 59/226 (26%), Gaps = 7/226 (3%) Query: 26 DLASLCEALSQLVKRSALADNAAIVLWQAQTQRASYYASREKDTPIKYEDETVLAH---- 81 DLA+L LSQ + + L + + + Sbjct: 14 DLAALLRDLSQALGPHLPRGYLSFALLEPHSHAGKLQFLEPVGGGPAPKSADTPTELPAG 73 Query: 82 -GPVRSILSRPDTLHCSYEEFCETWPQLDAGGLYPKFGHYCLMPLAAEGHIFGGCEFIRY 140 P + + L +P L C +PL G F Y Sbjct: 74 ESPTAHVWDTQEPLWLDV-TADGRFPVLRTAFAKQGVRCACFVPLTTPRRKLGAMAFTSY 132 Query: 141 DDRPWSEKEFNRLQTFTQIVSVVTEQIQSRVVNNVDYELLCRERDNFRILVAITNAVLSR 200 + + N ++V++ E +R L E+ + + Sbjct: 133 LPVSPAPDDINFTLQVGRLVALAVEGALTRQELERANARLAAEKLYLEEEIRADRRMHEV 192 Query: 201 LDMDELVSEVAKEIHYYFDIDDISIVLRSHRKN-KLNIYSTHYLDK 245 + + EV K++ D +V +L + H L Sbjct: 193 VGDSRTLQEVLKQVEVVAPTDSAVLVTGETGTGKELVARAVHRLSA 238 >UniRef50_C3X424 Transcriptional regulator containing GAF n=2 Tax=Oxalobacter formigenes RepID=C3X424_OXAFO Length = 540 Score = 587 bits (1514), Expect = e-166, Method: Composition-based stats. Identities = 225/518 (43%), Positives = 313/518 (60%), Gaps = 10/518 (1%) Query: 183 ERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHY 242 + D F LV +T+AV++ D+ L + A +H +F +D IS+ +LN+ + + Sbjct: 19 DHDFFHFLVDLTDAVIAATDIPCLAEKTADYLHEFFGLDYISLETYEPASFRLNVQAIRF 78 Query: 243 LDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCL 302 + + TL + +E +L N + A + G+ +Q L Sbjct: 79 EQGKRRLYNSFSKPLHATLLGAALRKQEKILFNRNAILSNAAKYPYVARLAGDGLQVLLY 138 Query: 303 LPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVD 362 LPL+S +LG L + + FT + LL +I+ R+A+A+D L++++ + Sbjct: 139 LPLVSAGNLLGTLGVGSFKPCHFTPETMALLNRISARLAVALDVMLSHRKKTAPASVSPN 198 Query: 363 ENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAI 422 E+ + + +IG S A+ S+L+Q+E+VA S++TVL+ GETGTGK LIA+ I Sbjct: 199 ESPITGDNIEETPPPHH-LIGHSVAIQSILQQIEIVASSNATVLLQGETGTGKGLIAQTI 257 Query: 423 HNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEV 482 HNLS R R MVKMNC A+P+ L+ES+LFGHE+GAFTGA +RIG FE ADKS+LFLDE+ Sbjct: 258 HNLSDRKARDMVKMNCTAIPSELMESELFGHEKGAFTGALNKRIGHFEQADKSTLFLDEI 317 Query: 483 GDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRL 542 GDMPL+LQPKLL VLQE + RLGS I DVR IAATN DL + D+ FRSDL+YRL Sbjct: 318 GDMPLDLQPKLLSVLQEHQIRRLGSPHTISVDVRCIAATNCDLVAKIEDKTFRSDLFYRL 377 Query: 543 NVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELE 602 NVFPI +PPLRER EDIP LA+ F K AR + R+I IP+ETL ++ + WPGN+RELE Sbjct: 378 NVFPITVPPLRERAEDIPSLARFFIRKYAREMNRHITGIPSETLALMTRLPWPGNIRELE 437 Query: 603 NVIERAVLL-TRGNVLQLSLPDIVLPEPETPPAA--------TVVALEGEDEYQLIVRVL 653 NV+ERAV+L ++G VL LS ++ + P V E + +V L Sbjct: 438 NVMERAVILTSQGGVLNLSPESLLSYTTQNSPLTVHASSQPVVPVPAIPETDKDTLVNAL 497 Query: 654 KETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSAL 691 +ET G + G GAA RLGLKRTTLL+R+KR GI+ Sbjct: 498 RETGGQIGGKTGAAARLGLKRTTLLARLKRFGINADDF 535 >UniRef50_B5JMU1 Sigma-54 interaction domain family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JMU1_9BACT Length = 539 Score = 585 bits (1509), Expect = e-165, Method: Composition-based stats. Identities = 193/526 (36%), Positives = 283/526 (53%), Gaps = 14/526 (2%) Query: 171 VVNNVDYELLCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSH 230 + N + CR +L +I+ + LD+ ++V + + + ++ +I + + Sbjct: 21 ELLNRATGVSCRSVQELGLLFSISQTLEKSLDLGDIVRPALRRMQGFIGLERGTISILNR 80 Query: 231 RKNKLNIYSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHE--RDDLAPYERM 288 + L + P +D + ER +S++ ++I E + Sbjct: 81 DTGGFLLAEAIGLPRGLPPAN--YLDMIRPILERTVESRDPVVITDLAVWARKQGVEEDV 138 Query: 289 LFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNAL 348 L + +PL + +G L + + ++L +L IA VA A A Sbjct: 139 LESLRLADGVGMVSVPLKFDEEAIGTLSIERANTNFGWESDLRILGMIASIVAQA---AR 195 Query: 349 AYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLIL 408 ++ + L EN L E++ + IIG S M SV +E VA S +TVLI Sbjct: 196 VRRDAAEQIQSLRAENERLQEEIAHG-FRPENIIGSSSTMRSVYYHIEQVANSATTVLIR 254 Query: 409 GETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGR 468 GE+GTGKEL+A+A+H S R N+ VK NCAA+P ++ES+LFGHE+GAFTGA A R GR Sbjct: 255 GESGTGKELVAKALHEKSSRRNKPFVKFNCAALPDSIIESELFGHEKGAFTGALAMRKGR 314 Query: 469 FELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKM 528 FE A+ ++FLDE+GD+ L Q KLLRVLQE+EFER+GS + + DVR+IAAT+R+L++M Sbjct: 315 FESANGGTIFLDEIGDISLSTQVKLLRVLQEREFERVGSQETRRVDVRVIAATSRNLEEM 374 Query: 529 VADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRT 588 + FR DLYYRLNVFPI++PPLRER DI +LA F K A+R+GR I + + Sbjct: 375 MEAGTFREDLYYRLNVFPIYMPPLRERKCDILMLADHFIEKFAKRMGRKPIRISSAAIDM 434 Query: 589 LSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEG---EDE 645 L + W GNVRELEN IERAVLL +G ++ L + ++ V LE E Sbjct: 435 LVSYHWAGNVRELENCIERAVLLAKGQSIKAHHLPPTLQKKSRAESSEVATLEDAIQALE 494 Query: 646 YQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSAL 691 ++IV LKET + A++RLGL R+K+ GID S Sbjct: 495 REMIVDALKETG---SNLAEASRRLGLTERKAGLRVKKYGIDVSRF 537 >UniRef50_B3QSR6 Transcriptional regulator, NifA, Fis Family n=2 Tax=Bacteria RepID=B3QSR6_CHLT3 Length = 557 Score = 584 bits (1506), Expect = e-165, Method: Composition-based stats. Identities = 184/553 (33%), Positives = 297/553 (53%), Gaps = 41/553 (7%) Query: 171 VVNNVDYELLCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSH 230 N + + + + +L I+ A+++ D+++++ V + + + I + + Sbjct: 2 ETVNQNIKTNEEQPNELTLLAEISRALINEEDINKILRLVLLIMSEHMGMLRGVITIFNR 61 Query: 231 RKNKLNIYSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLF 290 ++ I + L + A + ++ E + +V ++ + +++ ++ L + Sbjct: 62 DSGEIVIKESFGLSPEEQARGRYKLGEG--IIGQVVETGKPVVVPSIAKEPLFLDKTRSR 119 Query: 291 DTWGNQIQTLCLLPLMSGDTMLGVLKLAQ----------------------CEEKVFTTT 328 + +P+ +G ++G L + C E + Sbjct: 120 EKDEKNDLCFVCVPIRAGQEVIGTLSADRKVSSKNPRVALTQTQGGKQTRGCGENGMFNS 179 Query: 329 NLNLLRQIAERVAIAVD-NALAYQE-IHRLKERLV-------DENLALTEQLNNVD--SE 377 ++NLL IA ++ AV +A++E ++ K L N + + N+++ + Sbjct: 180 DVNLLSIIAAMISQAVRLRQVAHEENLYHWKSNLQISAPEGKSHNSDVFDNPNSIEVGEQ 239 Query: 378 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMN 437 IIG +++M V K ++ +A +++TVLILGE+G GKEL+A AIH S R +K N Sbjct: 240 PANIIGNAKSMRVVFKMIDKIAPTNATVLILGESGVGKELVANAIHYKSQRAASPFIKFN 299 Query: 438 CAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVL 497 CAA+P ++ES+LFGHERGAFTGASA R GRFELA+ ++FLDEVG++ L +Q KLLR+L Sbjct: 300 CAALPESIVESELFGHERGAFTGASATRKGRFELANTGTIFLDEVGELSLSIQAKLLRIL 359 Query: 498 QEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPE 557 QE+EFER+G NK I+ DVR+IAATNR+L++ + + +FR DL+YRLN+FP+ +PPLRER Sbjct: 360 QEKEFERVGGNKTIKADVRIIAATNRNLEEEIQEGKFREDLFYRLNIFPVTVPPLRERKS 419 Query: 558 DIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVL 617 DI LLA F K + G+ + I + L WPGNVRELEN +ERAV+L+ V+ Sbjct: 420 DILLLADYFVEKYNQMNGKGVRRISTTAIDMLMRYHWPGNVRELENCVERAVILSDDGVI 479 Query: 618 Q-LSLPDIVLPEPE--TPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKR 674 LP + TP A + EY+LIV LK T G ++ AA LGL Sbjct: 480 HGYHLPPTLQTAESSGTPCAGPLQQRLDALEYELIVEALKNTKGNMS---KAAMELGLTD 536 Query: 675 TTLLSRMKRLGID 687 + R+K+ ID Sbjct: 537 RVMGLRVKKFDID 549 >UniRef50_B6WRE4 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WRE4_9DELT Length = 521 Score = 581 bits (1499), Expect = e-164, Method: Composition-based stats. Identities = 191/528 (36%), Positives = 266/528 (50%), Gaps = 26/528 (4%) Query: 180 LCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYS 239 + R+L ++ + D+ + + + + I L S ++ I Sbjct: 1 MRETVSELRLLFDLSQVIDHSRDISHSLEATLSLMAQHLHMMRGMITLVSPHTGEIRIEV 60 Query: 240 THYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQT 299 H L+ + E +T RV +S + ++++ + D + I Sbjct: 61 AHGLNPAEQRRGHYALGEG--VTGRVIQSGQPMVVSNVSASPIFLNRTRSRDLQKDTI-A 117 Query: 300 LCLLPLMSGDTMLGVLKLAQ-CEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKE 358 +P+ D +LG L + + + V + +L IA +A A A A Q + + Sbjct: 118 FICVPIKFEDEVLGALSVDRVFADAVTLEEDERILTIIASMIAHA---ARARQNVMDERV 174 Query: 359 RLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELI 418 ++EN+ L L+ G +G S+AM V +Q+ VA S +TVL+ GE+GTGKEL Sbjct: 175 AAIEENMRLRNALSAPLRPHG-FVGNSDAMRLVYEQISQVAPSSTTVLLYGESGTGKELA 233 Query: 419 ARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLF 478 A AIH+ R+ + +NCAA+P L+ES+LFGHE+GAFTGAS R GRFELAD +LF Sbjct: 234 AHAIHSAGKRSKGPFISLNCAALPENLIESELFGHEKGAFTGASGIRKGRFELADGGTLF 293 Query: 479 LDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDL 538 LDEVG++ L Q KLLRVLQE+ FERLG + + DVR+I ATNRDL +MV + FR DL Sbjct: 294 LDEVGELSLLTQAKLLRVLQERCFERLGGTESLSVDVRIITATNRDLARMVEEGTFRRDL 353 Query: 539 YYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNV 598 YYRLNVFPIH+PPLRER DI LA F K A GR+ I + L WPGN+ Sbjct: 354 YYRLNVFPIHMPPLRERQNDIQPLAAYFVDKYAAANGRSGIRISLAVMDMLQRYTWPGNI 413 Query: 599 RELENVIERAVLLT--RGNVLQLSLPDIVL-------------PEPETPPAATVVALEGE 643 RELENV+ERAVLL G +L LP + P + T+ E Sbjct: 414 RELENVMERAVLLVGQDGLILPQHLPRELHSTHCPFGPAAHKGPVEPYAASGTLQDRLDE 473 Query: 644 DEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSAL 691 E I L G + AAQ LGL + RMK+ GI+ Sbjct: 474 LERACITDALARHKGHMG---HAAQALGLTERVMALRMKKHGINYKDF 518 >UniRef50_C8QWL5 Transcriptional regulator, NifA, Fis Family n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QWL5_9DELT Length = 539 Score = 581 bits (1497), Expect = e-164, Method: Composition-based stats. Identities = 176/525 (33%), Positives = 280/525 (53%), Gaps = 16/525 (3%) Query: 169 SRVVNNVDYELLCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLR 228 + N E L R+ + L IT + S D+ ++++ + +++ ++ + Sbjct: 15 NGAGNGEATEPLPRDYADLACLYEITRELASSADLRVCLAKILAILSRQKGLNNGAVTII 74 Query: 229 SHRKNKLNIYSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERM 288 + ++ H + + + E +T RV S +++ + L Sbjct: 75 NPLTGQIETEVAHGITVEARKKGTYRIGEG--ITGRVVASGAPIVVPRISEEPLFLDRTS 132 Query: 289 LFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQ-CEEKVFTTTNLNLLRQIAERVAIAVDNA 347 + G ++ + +P+ G +G L + + E +L L ++ VA V Sbjct: 133 ARRSRGEEL-SFICVPIRRGPDTIGALSVDREYREGEEFEQDLRFLTILSGLVAQTVKRV 191 Query: 348 LAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLI 407 +++ ++RL EN L +L+ I+ S M VL+ + VA S++TVL+ Sbjct: 192 QL---VNQEQQRLEQENSQLRRELSE-KYRVSSILSNSSRMQEVLEMIHRVAASNATVLL 247 Query: 408 LGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIG 467 GE+GTGK ++ARA+H+ S R + +NC+A+P LLES+LFGHERGAFTGA R G Sbjct: 248 RGESGTGKSMVARAVHHNSKRAAGPFITVNCSALPETLLESELFGHERGAFTGAHETRKG 307 Query: 468 RFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKK 527 RFELA+ +LFLDE+G++ +Q KLL V+Q++EF+R+G ++ ++ DVRLI ATN+DL+K Sbjct: 308 RFELAEGGTLFLDEIGELSTAVQVKLLSVVQDREFQRVGGSRPLKCDVRLITATNKDLEK 367 Query: 528 MVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLR 587 VA+ FR DLYYRLNVFPI+LPPLRER DI LLA+ F K A +NI I + Sbjct: 368 AVAEGTFREDLYYRLNVFPIYLPPLRERRTDILLLAEFFLEKFASENDKNIRRISTPAID 427 Query: 588 TLSNMEWPGNVRELENVIERAVLLTRGNVLQ-LSLPDIVLPEP---ETPPAATVVALEGE 643 L+ WPGNVREL+N +ERAVL+ + ++ LP + E P++ A+E Sbjct: 428 LLTQYHWPGNVRELQNCLERAVLICDEDTIKSYHLPPTLQSSDSLREVSPSSFTAAVES- 486 Query: 644 DEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDK 688 E +LI+ LK+T+G AA L + ++K+ I+ Sbjct: 487 FERELIIDALKKTDG---NQTRAAALLETSLRIINYKIKKYAIEP 528 >UniRef50_C7PN78 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PN78_CHIPD Length = 541 Score = 579 bits (1493), Expect = e-163, Method: Composition-based stats. Identities = 201/533 (37%), Positives = 303/533 (56%), Gaps = 16/533 (3%) Query: 174 NVDYELLCRERDNFRILVAITNAVLSRLDMDELVS-EVAKEIHYYFDIDDISIVLRSHRK 232 + E L ++ IL+ ++N + + ++L + ++ F+ +I + + Sbjct: 2 EMFSEQLVQKEKEQAILLELSNRIAAARHREDLWDNLITAQLLELFNSKYYTICMINEDG 61 Query: 233 NKLNIY-----STHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYER 287 + + ST + V ++ + L + Sbjct: 62 VTHSPFLHSEESTIKSRTGETPIISDLHPIEDGVFNLVLEADGPVSFELQKLMRGRLVPP 121 Query: 288 MLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNA 347 ++ + + + + + +G G+L L + F+ + L I + I + N Sbjct: 122 YIYRWFNVGVVEMMAVKICNGQQPKGLLYLFTDQRDAFSEVDARLTNAITNILGIGISNI 181 Query: 348 LA-------YQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQ 400 LA QEI R +++L +EN L EQ + + F +I+G S M + + VA Sbjct: 182 LANETIEKQLQEIERFRQKLQNENHYLQEQ-QGLQNTFADIVGTSAEMQRRITILSRVAP 240 Query: 401 SDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTG 460 S+STVL+LGETGTGKE+ ARAIH S R + M+K+NCAA+P L+ES+LFGHE+G+FTG Sbjct: 241 SESTVLLLGETGTGKEVFARAIHAGSPRRDNLMIKVNCAALPPHLIESELFGHEKGSFTG 300 Query: 461 ASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAA 520 A+ +RIG+FELAD S+LFLDE+G++PLE Q KLLRVLQE+E ER+G I+ +VR++AA Sbjct: 301 ATQRRIGKFELADHSTLFLDEIGELPLEFQSKLLRVLQEKEIERIGGKGSIKVNVRIVAA 360 Query: 521 TNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDS 580 TNR+L++ V FRSDLYYRL+VFPI +PPLRER EDIP LA F + A R S Sbjct: 361 TNRNLEEEVRAGRFRSDLYYRLHVFPIAIPPLRERKEDIPALANHFLQRFAANSRREAPS 420 Query: 581 IPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVL-QLSLPDIVLPEPETPPAATVVA 639 I A+ + L + EWPGNVRELE+++ER +LLT V+ ++ LP + + + P + ++ Sbjct: 421 ISAKAMEGLMHYEWPGNVRELEHLMERTLLLTTTPVIAKIDLPGVPVTASKDPDSTFILP 480 Query: 640 LEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSALI 692 L+ E + I++VLK NG +AGP GAA +L L TTL SRMK+LGI KS + Sbjct: 481 LDL-MEKEYILKVLKLCNGRIAGPNGAAAKLKLPSTTLNSRMKKLGIKKSHYV 532 >UniRef50_C0GSN4 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GSN4_9DELT Length = 519 Score = 579 bits (1492), Expect = e-163, Method: Composition-based stats. Identities = 178/509 (34%), Positives = 279/509 (54%), Gaps = 16/509 (3%) Query: 184 RDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYL 243 + +L I+ + LD+D+ + + K + + + L I ++H L Sbjct: 8 QVKLNVLHEISKVIEKALDLDKALEAILKILADSLSMKRGAFSFIEEDSGLLVISASHGL 67 Query: 244 DKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLL 303 Q +DE +T R+F + + ++ ++ L + +I + + Sbjct: 68 TSQEKNRGVYRMDEG--VTGRIFSTGKPFIVPDIAKEPLFLDKTGSRSMEKERI-SFAGV 124 Query: 304 PLMSGDTMLGVLKLAQ-CEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVD 362 P+ T +GVL + + ++ + ++ LL +A VA V +++ +E L Sbjct: 125 PVTLQGTTVGVLTVDRLFDQDISLEEDIQLLSIVAAMVAQFVS---LNRQVKDREENLRR 181 Query: 363 ENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAI 422 EN L +L++ F I+G+S +M V + +E VA + +TVL+LGE+GTGK LIA I Sbjct: 182 ENQNLKTRLSSSFQRFF-IVGKSSSMLQVRQMMEKVAPTRATVLLLGESGTGKTLIAGII 240 Query: 423 HNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEV 482 H LS R +K+NCA++P LLES+LFG+E+GAFTGA + GRFE A + ++FLDE+ Sbjct: 241 HELSERGKFPFIKVNCASLPENLLESELFGYEKGAFTGAERSKPGRFEEAHRGTIFLDEI 300 Query: 483 GDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRL 542 G+MP LQ KLLR LQE+EFERLG K + DVR+IAATN++L K V + FR DLYYRL Sbjct: 301 GEMPAGLQAKLLRFLQEREFERLGGVKTHRVDVRVIAATNKELDKEVQEGRFREDLYYRL 360 Query: 543 NVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELE 602 NVFPI +P LRER EDIP L F K+AR GR + + +L L EWPGN+RE+E Sbjct: 361 NVFPIWVPSLRERREDIPSLINHFLDKMAREYGRRLV-LSNSSLDYLVEYEWPGNIREME 419 Query: 603 NVIERAVLLTRGNVLQL-SLPDIVLPEPETPPAATVVALEG---EDEYQLIVRVLKETNG 658 N++E+ +++ G ++ L LP + E P A + + E + I+ L+ + Sbjct: 420 NLMEKLSIMSEGQIVALKDLPSDMQQEKVCPGKVQEQARDHSLLDMEKKEILSALQRNSW 479 Query: 659 VVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 + AA+ LGL + + R+K+ ++ Sbjct: 480 I---QSRAARELGLTQRQMGYRIKKFNLE 505 >UniRef50_D2QLL9 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QLL9_9SPHI Length = 875 Score = 578 bits (1491), Expect = e-163, Method: Composition-based stats. Identities = 207/609 (33%), Positives = 321/609 (52%), Gaps = 30/609 (4%) Query: 97 SYEEFCETWPQLDAGGLYPKFGHYCLMPLAAEGHIFGGCEFIRYDDRPWSEKEFNRLQTF 156 ++++ CE + + L P+ + F +++K++ + Sbjct: 272 AFDQLCERYITARSCRDNFGVRSLVLFPIQLKRKAFTTIILSSIRADGFTQKDYQAVNLI 331 Query: 157 TQIVSVVTEQIQSRVVNNVDYELLCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHY 216 +++ + + YE + R +AI NA + D ++ +VA I+ Sbjct: 332 APQIALALDNLL-------AYEEIEARRQTKTTELAIVNAFQNGKDSHAIIPQVAAIINE 384 Query: 217 YFDIDDISIVLRSHRKNKLNIYSTHYLDKQHPAHEQSEVDEAGTLTERVFKSK------- 269 D +++ R +L + + Q + E + + + Sbjct: 385 LMPFDLLAVY----RIGRLLESAAIDMAVQKQGGVFVAITEKDVVPQTLADQASWKQALA 440 Query: 270 -------EMLLINLHERDDLAPYERML-FDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCE 321 E + + D+ + F +++ +P+ S + L LA Sbjct: 441 DMETWLVEPAINVGQQFVDIQQRSVVSRFYAEALGLKSSMYVPIFSKGKPIAALILASKA 500 Query: 322 EKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEI 381 FT +L L+ I+ +A+A++N AY+ I L E L E L E++ F EI Sbjct: 501 AYAFTPKDLCTLQDISVELALALENLSAYERIKVLSEHLEQEKTYLAEEIKTSH-NFEEI 559 Query: 382 IGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAM 441 IG S +M +V + VA +D TVLI+GETGTGKELIARA+H+LS R +R +VK+NCAA+ Sbjct: 560 IGTSSSMQTVFNAIGQVAPTDYTVLIMGETGTGKELIARAVHSLSARRDRPVVKINCAAL 619 Query: 442 PAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQE 501 PA L+ES+LFGHERG+FTGA+ +RIG+FELA+ +LFLDE+G++PLELQ KLLR +QE+E Sbjct: 620 PAQLIESELFGHERGSFTGATEKRIGKFELANGGTLFLDEIGELPLELQAKLLRAIQEKE 679 Query: 502 FERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPL 561 ER+G +I + R+IAATNR+L++ VA FRSDLYYRLNVFPI +PPLRER EDI Sbjct: 680 IERVGGKGVILINTRIIAATNRNLQQEVAAGRFRSDLYYRLNVFPIVVPPLRERQEDILP 739 Query: 562 LAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSL 621 L F KI+++LG+ I +I +L+ L WPGN+RELE+V+ER+ +L++ L L+ Sbjct: 740 LTMHFLQKISKKLGKPITNIANASLQQLLQYPWPGNIRELEHVLERSSILSQSATLTLAE 799 Query: 622 PDIVLPEPETP---PAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLL 678 P P ++ V + I+ L ++ + G GAA+ L +K TTL Sbjct: 800 PLRAATTAFPPFVVQSSEEVKSIDDAMRLAILAALAKSGNRIRGTGGAAELLNIKPTTLE 859 Query: 679 SRMKRLGID 687 +RMK+L I Sbjct: 860 ARMKKLNIS 868 >UniRef50_A4CKT3 Transcriptional regulator, NifA subfamily, Fis Family protein n=1 Tax=Robiginitalea biformata HTCC2501 RepID=A4CKT3_9FLAO Length = 791 Score = 574 bits (1480), Expect = e-162, Method: Composition-based stats. Identities = 195/610 (31%), Positives = 330/610 (54%), Gaps = 32/610 (5%) Query: 100 EFCETWPQLDAGGLYPKFGHYCLMPLAAEGHIFGGCEFIRYDDRPWSEKEFNRLQTFTQI 159 E E++ ++D L + L G G I ++++ N I Sbjct: 195 EERESFLKIDREVLNSGVENVNEETLTVRG---GDTRIISTKKSRFTDEAGNHF--LIGI 249 Query: 160 VSVVTEQIQSRVVNNVDYELLCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFD 219 + +TE+ ++ ++D L A +++ D+ E + K + Sbjct: 250 IRDITERKRAEQALEDRARRSEIKKDAILKL-----AGMAQDDLQETFRRITKLAAQTLE 304 Query: 220 IDDISIVLRSHRKNKLNIYSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHER 279 ++ +SI ++ N++ + + ++ ++ + ++ +L+ + + Sbjct: 305 LERVSIWKFTNSGNEILCEALYIENEGQHRRGDRLTRADCPNYFKLLEQQKSVLVP-NAQ 363 Query: 280 DDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKV--FTTTNLNLLRQIA 337 +D A + N I++L + + S G+L + +T +L +A Sbjct: 364 EDPATADFGPGYLKPNGIKSLMDVFVYSAHQPYGILCFEHVGPGIRSWTAEDLEFASSMA 423 Query: 338 ERVAIAVDN-----------------ALAYQEIHRLKERLVDENLALTEQLNNVDSEFGE 380 V++ V++ + A +E+ L+ RL EN+ L +L ++ + E Sbjct: 424 NVVSLMVESNERKKAEEQIRQANLELSKANKELDTLRNRLEQENMYLRNEL-DLAFNYQE 482 Query: 381 IIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAA 440 ++ S+A+ VL +VE VA +++TVL+ GE+GTGKEL+ARAIHN+S R+ + M+K+NCAA Sbjct: 483 MVYSSQAISQVLTEVEQVAATNATVLLQGESGTGKELLARAIHNISPRSGKPMIKVNCAA 542 Query: 441 MPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQ 500 +P LLES+LFGH++GAFTGA + ++G+FELAD +LFLDE+G++PLE+QPKLLR LQE Sbjct: 543 IPGELLESELFGHKKGAFTGAVSNKVGKFELADGGTLFLDEIGELPLEMQPKLLRFLQEG 602 Query: 501 EFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIP 560 E E +G ++ + DVR+IAATNR LK+ V +FR DLY+R+NVFPI +PPLRER EDIP Sbjct: 603 EIEVVGGTEVRKLDVRIIAATNRYLKEEVEKGDFREDLYFRINVFPIEVPPLRERKEDIP 662 Query: 561 LLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLS 620 +L + F K R+ G+NI + E + L EWPGN+RELEN++ERA +++RG L + Sbjct: 663 ILVEHFMDKFNRKYGKNISFVTEEAMSQLKQYEWPGNIRELENLLERATIVSRGETLIIP 722 Query: 621 LPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSR 680 + + + P ++L + I+ VL + + G GAA+ L ++ +TL R Sbjct: 723 GFESQSQKSKMPLRNNNLSLTT-VQRNHILHVLDMCDWKITGQGGAAELLDMRPSTLRDR 781 Query: 681 MKRLGIDKSA 690 M++LGI++ Sbjct: 782 MQKLGIERPG 791 >UniRef50_Q7M8U4 TRANSCRIPTIONAL REGULATOR (NIFA FAMILY) n=1 Tax=Wolinella succinogenes RepID=Q7M8U4_WOLSU Length = 512 Score = 572 bits (1474), Expect = e-161, Method: Composition-based stats. Identities = 184/515 (35%), Positives = 281/515 (54%), Gaps = 18/515 (3%) Query: 181 CRERDNFRILVAITNAVLSRL-DMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYS 239 C R L I+ A+ + ++ + E + +F +D S LN+++ Sbjct: 12 CTRYQELRALYDISLALGGSVGEVKKAFEEALGLLKRHFFLDKSVYYELSEESQTLNVFA 71 Query: 240 THYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQT 299 + L K+ +V E T K++E +++ ++ L + + + Sbjct: 72 SAGLSKEQEFLASYKVGEGAT--GLAAKAREPIIVENIHQNLLFLNKS---GSRNEGEIS 126 Query: 300 LCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKER 359 +P +S + +LGVL ++ + + + + IA ++ +Q IH K+R Sbjct: 127 YLAVPALSQERILGVLGVSLTKHSMSDFDEMVTILTIA--ASLMAQARRIHQSIHEEKKR 184 Query: 360 LVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIA 419 + +E L E+L EIIG S + V + + +A S +TVLI GETGTGKELIA Sbjct: 185 ISEEKLYYKEELLKQS----EIIGYSPPIKRVSEIIAKIAPSSATVLIRGETGTGKELIA 240 Query: 420 RAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFL 479 +AIHN S R + +K+NCAA+P LLES+LFGHE+GAFT A R GRFELAD +LFL Sbjct: 241 KAIHNYSPRKEKPYIKLNCAAIPENLLESELFGHEKGAFTDARETRKGRFELADGGTLFL 300 Query: 480 DEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLY 539 DEVGD+ L LQ K+LR+LQEQEFER+G +K I+ DVR++AATNRDL++MV +FR DL+ Sbjct: 301 DEVGDLSLPLQAKILRILQEQEFERVGGSKTIKVDVRIVAATNRDLEEMVRMGDFREDLF 360 Query: 540 YRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVR 599 YRLNV PI PPLR+R +D+ LL++ F + +R + + + + L + +WPGN+R Sbjct: 361 YRLNVIPIFSPPLRDRGDDVILLSRYFLERFCKRHAKEL-HLTPKAEELLKHYDWPGNIR 419 Query: 600 ELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVV--ALEGEDEYQLIVRVLKETN 657 ELEN IER VLL + + VLP V A E E I++ LKE + Sbjct: 420 ELENSIERLVLLAPSESIDEEVVLSVLPGRVHGYTKEVKTRADLEELERSAIIKALKECH 479 Query: 658 GVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSALI 692 G+ AA++LG+ + ++++ I+ + Sbjct: 480 GI---KLQAAKKLGITNRQIGYKIQKYEIEPEDYL 511 >UniRef50_B4U9N2 Transcriptional regulator, NifA subfamily, Fis Family n=5 Tax=Aquificaceae RepID=B4U9N2_HYDS0 Length = 502 Score = 568 bits (1464), Expect = e-160, Method: Composition-based stats. Identities = 166/510 (32%), Positives = 276/510 (54%), Gaps = 14/510 (2%) Query: 177 YELLCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLN 236 + E + +L +++ A+ S+ D D+ + ++ K + ++ ++ I + Sbjct: 2 SNKIKLENIDVSLLTSVSKAL-SQKDFDKALRDILKIFYSFWGVEYSYIAFYDKSTKTIK 60 Query: 237 IYSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQ 296 I ++ + ++ + + +FK+ ++I + D + + D N+ Sbjct: 61 IREAFGFNQ---SVKKILFESGKGIVGNIFKNSIPVVIKDPKHDKAFLNKTKILDKIKNE 117 Query: 297 IQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRL 356 +P+ S D +GV L + K L + I V+ + + I + Sbjct: 118 --AFIGVPIRSEDRTIGVFCLFKDLNK---HEELTRIVDIMLVVSAMIGMSYKLFGILQE 172 Query: 357 KERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKE 416 ++ +E L + + +G+SEA+ ++ ++ +A +DSTVL+LGE+G GK Sbjct: 173 EKASWEEQRQLLAKEFSDTFSIEGFVGKSEAIITLKDTIQKIAMTDSTVLLLGESGVGKT 232 Query: 417 LIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSS 476 LIA+AIH LS R ++ + +NCAA+P LLE++LFG+E+GAFTGA + G+FELA+ + Sbjct: 233 LIAKAIHTLSERKDKPFISVNCAAIPETLLEAELFGYEKGAFTGAVHSKKGKFELANGGT 292 Query: 477 LFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRS 536 +FLDE+G++PL+ Q KLLRV+QE+E E+LG+ K I +VR+IA+TN+DL MVA EFR Sbjct: 293 IFLDEIGELPLQSQSKLLRVIQEKELEKLGAEKSIFVNVRVIASTNKDLASMVARGEFRE 352 Query: 537 DLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPG 596 DLYYRLNV PI +P LRER EDIPLL K F K + ++I+ I E + L N WPG Sbjct: 353 DLYYRLNVIPIRVPALRERKEDIPLLVKHFLDKFNKHYKKHIN-IEKEAMEALVNYNWPG 411 Query: 597 NVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKET 656 N+RELEN+IER V++ ++ + + + + ++ E + I + L++ Sbjct: 412 NIRELENLIERLVVINNKDITKEDVL-LATKINSNKLQTDIPSIIESTEKEAIKKALEKC 470 Query: 657 NGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 V AA+ LGL L R+K+ I Sbjct: 471 GYV---KSKAAKILGLTLRQLDYRIKKYNI 497 >UniRef50_C6W352 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Dyadobacter fermentans DSM 18053 RepID=C6W352_DYAFD Length = 693 Score = 568 bits (1464), Expect = e-160, Method: Composition-based stats. Identities = 208/538 (38%), Positives = 317/538 (58%), Gaps = 16/538 (2%) Query: 159 IVSVVTEQIQSRVVNNVDYELLCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYF 218 I+ + QI + N + E + R + +++ ++ + +L +K + F Sbjct: 164 ILQGICSQIAIAMGNIMANEDIFRRQAEQELMLGFSSDITGVKTKSDLEIVTSKTLERLF 223 Query: 219 DIDDISIVLRSHRKNKLNIYSTHYLDKQHPAHEQSEVDEAGTLTER----VFKSKEMLLI 274 + + L + L Y Q ++E + + E VF+S + +L+ Sbjct: 224 NTRISVLYLLDTDQVTLRPYLYDRQFFQETEVAENEAFYSLNINEEHVKLVFESSQPVLL 283 Query: 275 NLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLR 334 ++ E + A ++ + + L G+ LG++ + + +L+ Sbjct: 284 DIDENLE-AKCLKLSIQRELSGFNRVYASALRLGEQKLGMVWMLG------DQVSGPILQ 336 Query: 335 QIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQ 394 I +++ AV N LA ++I RL+++L DEN L +QLN +F EI+G EAM V + Sbjct: 337 GICAQISTAVSNVLANEQILRLQKQLEDENHYLKQQLNK---DFEEIVGGGEAMQQVYRL 393 Query: 395 VEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHE 454 + +VA+S++TVL+LGETGTGKELIA+A+H+ S R ++ M+K+NCAAMPA L+ES+LFGHE Sbjct: 394 ISLVAESNATVLLLGETGTGKELIAKAVHHTSARKDKLMIKVNCAAMPASLIESELFGHE 453 Query: 455 RGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTD 514 RGAFTGA +RIG+FELA+ S+LFLDEVG+MP+E Q KLLRVLQE+E ER+G I+ + Sbjct: 454 RGAFTGAVERRIGKFELANNSTLFLDEVGEMPMETQVKLLRVLQEKEMERVGGKTTIKLN 513 Query: 515 VRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRL 574 VR+IAATNRDL+ V FRSDLYYRLNVFPI+LPPLR+R EDI LA F K ++ + Sbjct: 514 VRIIAATNRDLEAEVKAGRFRSDLYYRLNVFPINLPPLRDRREDIESLAGFFLAKFSKSI 573 Query: 575 GRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVL-QLSLPDIVLPEPETPP 633 G+ + A LR L WPGNVRELE++IER+V+L ++ + LP + Sbjct: 574 GKKTVKLSANALRQLQAYLWPGNVRELEHLIERSVILATDPMIREFFLPQATGATTDEHT 633 Query: 634 AATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSAL 691 + + LE + E I++VL+ G ++G GAA+ LG+ T+ S+M++LGI K+ Sbjct: 634 MQSDLTLE-QVERMHIIQVLRRCGGKISGIGGAAEILGIPGNTIHSKMRKLGITKAEY 690 >UniRef50_B8FJD2 Transcriptional regulator, NifA subfamily, Fis Family n=2 Tax=Bacteria RepID=B8FJD2_DESAA Length = 1038 Score = 567 bits (1463), Expect = e-160, Method: Composition-based stats. Identities = 186/513 (36%), Positives = 288/513 (56%), Gaps = 16/513 (3%) Query: 180 LCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNK--LNI 237 L +++ ++ + + + + +LV + ++ + ++ L + K + + Sbjct: 539 LRTDKNLLEEIMKLGQELATIRNDRDLVRHILATVNRITGAERGAVFLVNKETGKPAVVL 598 Query: 238 YSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQI 297 + + +Q + + + + E F + R L R + Sbjct: 599 RAARNIMEQDISRPEFQSSMK-MVREAAFTGR--------ARFRLTEAPRQSHPLENKVV 649 Query: 298 QTLCLLPLMSGDTMLGVLKLAQCE-EKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRL 356 + +P+ +T+LGVL + +++ +L + + AIA+DNA +++ L Sbjct: 650 HSCICVPMKFRETVLGVLYVDNRIFPSALKESDIRILDFFSSQAAIALDNARIHEQNRAL 709 Query: 357 KERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKE 416 +L +E L EQ + E +G A+ VL V+ +A +DSTVLILGETG GKE Sbjct: 710 IRKLEEEKRYLEEQQSEFQPPV-EFVGECAAVRKVLNDVKKIAATDSTVLILGETGVGKE 768 Query: 417 LIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSS 476 LI+ AIH S R + +++NC+ P GL+ S+LFGHE+GAFTGA +R+GRFELAD + Sbjct: 769 LISTAIHERSSRAGKPFIRVNCSMFPEGLIASELFGHEKGAFTGADKRRLGRFELADGGT 828 Query: 477 LFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRS 536 LFLDE+GD+ E+Q +LLRVLQ +EFER+G +++D RL+AATNRDL++ V +FR Sbjct: 829 LFLDEIGDISHEVQVRLLRVLQNKEFERVGGRSTLRSDFRLLAATNRDLREDVKTGKFRE 888 Query: 537 DLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPG 596 DLYYRLNV + +PPLRER EDIPLL F + A+ LG+ ++ E L L +WPG Sbjct: 889 DLYYRLNVLSLKIPPLRERKEDIPLLVDYFLDRHAKNLGKPRGAVTPEDLDKLVAYDWPG 948 Query: 597 NVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKET 656 NVRELENVIER+ +L+ G L++ PD+ ++LE E+E + I+ LK+T Sbjct: 949 NVRELENVIERSAILSSGARLEI--PDLFQSGASFALDREALSLE-ENERRHILWALKKT 1005 Query: 657 NGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKS 689 G V GP GAA+ L + TL SR+K+LGI + Sbjct: 1006 GGKVRGPGGAAELLEINHNTLFSRIKKLGIKRK 1038 >UniRef50_B4DAQ1 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DAQ1_9BACT Length = 987 Score = 567 bits (1462), Expect = e-160, Method: Composition-based stats. Identities = 224/735 (30%), Positives = 337/735 (45%), Gaps = 106/735 (14%) Query: 7 SDLGQQGLFDITRTLLQQPDLASLCEALSQLVKRSALADNAAIVLWQAQTQRASYYASRE 66 + + + L +ITR + L AL++ ++ + D I L A R + + Sbjct: 307 THIETEALLNITRAIGHHLQRDVLFGALAECLQTAVPTDCFGIALPVA-GARIQAHILNQ 365 Query: 67 KDTPIKYEDETV--LAHGPVRSILSRPDTLHC-SYEEFCETWPQLDAGGLYPKFGHYCLM 123 K+ + T+ ++ + + E E +P+ + C++ Sbjct: 366 KNIRSEGAPPTLHEAKGSAAEWVMKNREWYVAATRREVSERFPKTSEMMQREQMESACVL 425 Query: 124 PLAAEGHIFGGCEFIRYDDRPWSEKEFNRLQTFTQIVSVVTEQIQSRVVNN------VDY 177 PL A + G F+ ++ + + V+V + + Sbjct: 426 PLVAGDRVRGALFFLAAGKESYAALQHAFMNQVASAVAVALDDCLVQEEMRRLGEELAAQ 485 Query: 178 ELLCRERDNFRILVAITNAVLSRLDMDELVSEVAKEI----------HYYFDIDDISIVL 227 ++ E+ + + + +E ++ E ++ + +I + Sbjct: 486 KIARLEQQKEEVTHELEETSKALDASEERFRDLFDEAPIAYVHEELDSHFIRANRAAIRI 545 Query: 228 R-----SHRKNKLNIYSTHYLDKQHPAHEQSE-VDEAGTLTERVFK-----SKEMLLINL 276 ++ D Q E E + + V + + + I Sbjct: 546 LGIKPEDVPHTYGKTFAPDTPDAQRRMREAFESIGRGTDTSGVVLEMRRKDNGKPFWIQW 605 Query: 277 HERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQI 336 R D G +T+ I Sbjct: 606 WSRPD----------PSGKYTRTM--------------------------------FLDI 623 Query: 337 AERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVE 396 +RV + + K RL +N L E++ + F EI+G S ++ VL+QV+ Sbjct: 624 TDRVLM-----------EQDKARLEAQNTYLQEEIRSQH-NFVEIVGNSPSLLQVLRQVD 671 Query: 397 MVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERG 456 VA +DSTVLI GETGTGKELIARAIH+ S R R +VK+NC A+ GL+ES+LFGH +G Sbjct: 672 RVASTDSTVLICGETGTGKELIARAIHDRSPRRERPLVKVNCGAISTGLVESELFGHVKG 731 Query: 457 AFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVR 516 AFTGA A R GRFELAD ++FLDEVG++P E Q KLLRVLQEQEFE +GS K ++ DVR Sbjct: 732 AFTGAIANREGRFELADGGTIFLDEVGELPPETQVKLLRVLQEQEFEPIGSTKTVKVDVR 791 Query: 517 LIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGR 576 +IAATNRDL+ MV + +FRSDL+YRLNV P+ +PPLR+R DIPLL F K AR+LG+ Sbjct: 792 VIAATNRDLETMVREGKFRSDLFYRLNVVPLTMPPLRQRANDIPLLTMFFLEKFARKLGK 851 Query: 577 NIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLS---LPDI--------- 624 ++ I ET+ L WPGN+REL+NVIERAV+L+ G++L + LP Sbjct: 852 SLGQIAEETMARLCQYPWPGNIRELQNVIERAVVLSTGSLLTVEKGALPGATGVMAQGPG 911 Query: 625 ---------VLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRT 675 TP AT + E Q I VL++TN + G GAA+ L L+ + Sbjct: 912 WTPERAMIDAAEPLSTPLGATSGNALEDVERQHIASVLQQTNWRIEGANGAAKILNLQPS 971 Query: 676 TLLSRMKRLGIDKSA 690 TL SRM++LGI + A Sbjct: 972 TLRSRMQKLGIVRPA 986 Score = 106 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 54/257 (21%), Positives = 102/257 (39%), Gaps = 5/257 (1%) Query: 119 HYCLMPL-AAEGHIFGGCEFIRYDDRPWSEKEFNRLQTFTQIVSVVTEQIQSRVVNNVDY 177 Y +P+ A G G + +E++ L+ F E+ Q+ + Sbjct: 242 SYVGVPMRNASGRTIGHIAVLHTQPMEPTEEDIATLKIFAARGCAELERKQADDRLRQAH 301 Query: 178 ELLCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNI 237 L R L+ IT A+ L D L +A+ + D I L ++ Sbjct: 302 AELRRTHIETEALLNITRAIGHHLQRDVLFGALAECLQTAVPTDCFGIALP-VAGARIQA 360 Query: 238 YSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLI-NLHERDDLAPYERMLFDTWGNQ 296 + + + + + + G+ E V K++E + E + P + Q Sbjct: 361 HILNQKNIRSEGAPPTLHEAKGSAAEWVMKNREWYVAATRREVSERFPKTSEMMQR--EQ 418 Query: 297 IQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRL 356 +++ C+LPL++GD + G L ++ + + Q+A VA+A+D+ L +E+ RL Sbjct: 419 MESACVLPLVAGDRVRGALFFLAAGKESYAALQHAFMNQVASAVAVALDDCLVQEEMRRL 478 Query: 357 KERLVDENLALTEQLNN 373 E L + +A EQ Sbjct: 479 GEELAAQKIARLEQQKE 495 >UniRef50_A3ER00 Transcriptional regulator, NifA, Fis Family n=3 Tax=Leptospirillum RepID=A3ER00_9BACT Length = 553 Score = 567 bits (1461), Expect = e-160, Method: Composition-based stats. Identities = 186/528 (35%), Positives = 274/528 (51%), Gaps = 39/528 (7%) Query: 191 VAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQHPAH 250 AI+ + S D+D + + + + + SI+L + ++L H L ++ Sbjct: 15 FAISRELASSPDLDGALKRILEIMDEKLGLHRSSILLLENDSDELRTEIAHGLSEEEIRK 74 Query: 251 EQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQ-TLCLLPLMSGD 309 E +T V K+ + +++ R+ ++ + +PL Sbjct: 75 G--RFKEGEGITGAVLKTGDPIVVPDISREPRFLNRTGSRSERASRGKLAFLAVPLTFQA 132 Query: 310 TMLGVLKLAQCEEKVF--TTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLAL 367 +GVL E L +L I+ +A AV + ++ +++L + L L Sbjct: 133 RKVGVLSADCTIEPGSGNLDEELRVLTTISSIIAQAV---ILRKQFVEERKKLEERALRL 189 Query: 368 TEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSG 427 L + IGRS M + + V +VA+S +TVLI+GE+GTGKE++A+AIH S Sbjct: 190 EHHLKD-RYSIEGWIGRSRIMQQISESVHLVAKSRATVLIMGESGTGKEVVAKAIHFNSP 248 Query: 428 RNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPL 487 RN R V++NCAA+P LLES+LFGHE+GAFTGA R G+FE A + +LFLDEVG++ Sbjct: 249 RNRRPFVQINCAAIPESLLESELFGHEKGAFTGAHVSRPGKFEQAHEGTLFLDEVGEISP 308 Query: 488 ELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPI 547 +Q KLLRVLQE+ ER+G K I DVR+IAATNR+L++ + +FR DLYYRLNV PI Sbjct: 309 AVQVKLLRVLQERVVERVGGTKTIPVDVRIIAATNRNLEEAIRKNQFREDLYYRLNVVPI 368 Query: 548 HLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIER 607 +LPPLR+R EDIPLL F + + GR++ +I E + L +WPGNVRELEN +ER Sbjct: 369 YLPPLRQRKEDIPLLVNHFLGRFNQENGRSM-TISPEAISALIEHDWPGNVRELENTMER 427 Query: 608 AVLLTRGNVLQ-------LSLPDIVLP---EPETPPAAT----------------VVALE 641 V++T+ + + L+L LP E E PA+ + Sbjct: 428 LVVMTQADSIDITDVRRTLALFPSTLPHRREVEEKPASRDSGKENGSSLKGESLLLPEAV 487 Query: 642 GEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKS 689 E E I+ VL T + AA LG+ L RM + GID S Sbjct: 488 SELERAKILDVLDRTGWI---KTRAAALLGITPRQLGYRMMKYGIDPS 532 >UniRef50_B5EIR5 Transcriptional regulator, NifA subfamily, Fis Family n=6 Tax=Bacteria RepID=B5EIR5_GEOBB Length = 664 Score = 566 bits (1459), Expect = e-159, Method: Composition-based stats. Identities = 202/540 (37%), Positives = 314/540 (58%), Gaps = 24/540 (4%) Query: 161 SVVTEQIQSRVVNN-VDYELLCRERDNFRILVAITNAVL--SRLDMDELVSEVAKEIHYY 217 +V + I + + + E L E L +++A + ++D + + +++ + Sbjct: 123 GLVVQDITEQKLRQSLQTERLQVE----AFLSNLSSAFINVPVSEVDRKIEKALQKVVNF 178 Query: 218 FDIDDISIVLRSHRKNKLNIYSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLH 277 + SI + ++ L I ++ L P +E+ + + + E ++ Sbjct: 179 LGFERSSIWHFTPDRSSLRITHSYALPGVKP--PPTELMNLIPIWIEMIQLGESFRVSDV 236 Query: 278 ERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNL-NLLRQI 336 E + + I+++ +P G T++G + K L LR + Sbjct: 237 EELSDKFWREKQYCKDQGGIKSIMFIPASVGGTIVGAITFVSYSVKKEWPDELTQRLRLL 296 Query: 337 AERVAIAVDNALA-------YQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMY 389 E A A++ A EI +LK+RL EN+ L +Q+ +V+ + EIIG+SEA+ Sbjct: 297 WEVFANALERKRADQKIQNALAEIRQLKDRLEAENVYLRDQI-DVEYKHEEIIGKSEAIR 355 Query: 390 SVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESD 449 +VL+Q++ VA +DSTVLILGETGTGKELIARAIHN R R M+K+NCAA+PA L+E++ Sbjct: 356 NVLQQIQQVAPTDSTVLILGETGTGKELIARAIHNAGQRKARAMIKVNCAALPAALIEAE 415 Query: 450 LFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNK 509 LFGHE+GA+TGA + +IGRFE A+ S++FLDE+G++PLELQ KLLRV+QE +FERLG++K Sbjct: 416 LFGHEKGAYTGAVSSQIGRFEAANGSTIFLDEIGELPLELQSKLLRVIQEGQFERLGNSK 475 Query: 510 IIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFK 569 ++ DVR+IAATN LK+ V + +FR DLYYRLNVFPI +PPLR+R EDIPLL A + Sbjct: 476 PVKADVRVIAATNVSLKQAVKEGKFREDLYYRLNVFPIFVPPLRDRQEDIPLLVWAMVEE 535 Query: 570 IARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEP 629 ++ G+ I+ IP + + + WPGN+REL N++ERA++L+ G L + + D Sbjct: 536 FSKVFGKTIERIPRKNMEIMERYLWPGNIRELRNLVERAMILSNGGTLVVDILDGSAAAA 595 Query: 630 ETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKS 689 P E + I +L++T + G GAA+ L +K TTL SR+K+LG+ + Sbjct: 596 NEP------MTMEAAERKHIGFILEKTGWRIRGKGGAAEILDMKPTTLHSRIKKLGVKRK 649 Score = 42.9 bits (100), Expect = 0.044, Method: Composition-based stats. Identities = 35/257 (13%), Positives = 78/257 (30%), Gaps = 26/257 (10%) Query: 116 KFGHYCLMPLAAEGHIFGGCEFIRYD-DRPWSEKEFNRLQTFTQIVSVVTEQIQSRVVNN 174 +P + G I G F+ Y + W ++ RL+ ++ + E+ ++ Sbjct: 255 GIKSIMFIPASVGGTIVGAITFVSYSVKKEWPDELTQRLRLLWEVFANALERKRADQKIQ 314 Query: 175 VD-------YELLCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVL 227 + L E R + + + E + V ++I D ++L Sbjct: 315 NALAEIRQLKDRLEAENVYLRDQIDVEYKHEEIIGKSEAIRNVLQQIQQVAPTDSTVLIL 374 Query: 228 RSHRKNKLNIYSTHYLDKQHPAHEQSEVDEAGTLTERVFK--------SKEMLLINLHER 279 K I + Q A +V+ A + + + + R Sbjct: 375 GETGTGKELIARAIHNAGQRKARAMIKVNCAALPAALIEAELFGHEKGAYTGAVSSQIGR 434 Query: 280 DDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVL---KLAQCEEKVFTTTNLNLLRQI 336 + A + D G LPL +L V+ + + ++ ++ Sbjct: 435 FEAANGSTIFLDEIGE-------LPLELQSKLLRVIQEGQFERLGNSKPVKADVRVIAAT 487 Query: 337 AERVAIAVDNALAYQEI 353 + AV +++ Sbjct: 488 NVSLKQAVKEGKFREDL 504 >UniRef50_Q2LXW8 Nif-specific regulatory protein with sigma 54 interaction domain n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LXW8_SYNAS Length = 513 Score = 566 bits (1459), Expect = e-159, Method: Composition-based stats. Identities = 181/512 (35%), Positives = 269/512 (52%), Gaps = 22/512 (4%) Query: 185 DNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLD 244 + L AI + ++ + + V +E++ + I L ++ + H +D Sbjct: 7 EELAALHAIARTLAQPGELRDQLERVLQEMNQRVGMQRGMISLLDRESGEVWLDVAHGVD 66 Query: 245 KQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLP 304 Q +T +V ++ + + ++ +P Sbjct: 67 IQGME---VSYQPGEGITGKVAQTGRPMAVANLGQETHFLDRTGARRFLNRSELAFLCVP 123 Query: 305 LMSGDTMLGVLKLAQCEEKVFT-TTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDE 363 ++ + ++GVL + +V L +L I+E +A +V L +E Sbjct: 124 IIYDNRVVGVLSADKAARQVEDLDRELAMLSSISELIAKSVH-----------IRALEEE 172 Query: 364 NLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIH 423 N L L EIIG S M V + VA S++TVLI GETGTGKEL+ARAIH Sbjct: 173 NRRLRHMLGRSTVPDSEIIGHSRVMQEVFGLIAQVADSNTTVLINGETGTGKELVARAIH 232 Query: 424 NLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVG 483 + S R ++++NCAAMP L+ES+LFGHE+GAFTGA R GRFE A ++FLDEVG Sbjct: 233 DRSSRCKGPLIQVNCAAMPDTLIESELFGHEKGAFTGALHARRGRFEEAHGGTIFLDEVG 292 Query: 484 DMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLN 543 ++ Q KLLRV+QE++F+ LG+++++ DVR+IAATNR+L++ VA FR+DLYYRLN Sbjct: 293 ELSAAAQAKLLRVIQEKKFQPLGASRVVSVDVRIIAATNRNLEEDVAVGHFRADLYYRLN 352 Query: 544 VFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELEN 603 VFPI+LPPLRER DI LLA F K + +G+++ I L + WPGNVRELEN Sbjct: 353 VFPIYLPPLRERGSDIILLADYFVLKYNKIMGKSVKRISNAVLEAFLSHSWPGNVRELEN 412 Query: 604 VIERAVLLTRGNVLQ-LSLPDIVL---PEPETPPAATVVALEGEDEYQLIVRVLKETNGV 659 IERAVLL G+ ++ L LP + E E + A+ E +IV LKE++G Sbjct: 413 CIERAVLLATGDSIETLHLPPSLQIRSREGEKKESGKFNAMIESQERAMIVDALKESHG- 471 Query: 660 VAGPKGAAQRLGLKRTTLLSRMKRLGIDKSAL 691 AA+ LG + + ++++ GID Sbjct: 472 --NQSQAARILGTTKRIIQYKIQKFGIDPRRF 501 >UniRef50_Q39TH4 Transcriptional regulator, NifA subfamily, Fis family n=1 Tax=Geobacter metallireducens GS-15 RepID=Q39TH4_GEOMG Length = 556 Score = 565 bits (1458), Expect = e-159, Method: Composition-based stats. Identities = 212/520 (40%), Positives = 309/520 (59%), Gaps = 16/520 (3%) Query: 179 LLCRERDNFRILVAITNAVLSRL---DMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKL 235 ER F +L++ ++V S L ++D+ + + + + D ++V S +++ Sbjct: 32 STLEERLRFEMLLSEISSVYSNLPVEEVDKTIESGLQRLGEFLGADRCNLVQFSEDGSRV 91 Query: 236 NIYSTHYLDKQHPAHEQSEVDEAG-TLTERVFKSKEMLLINLHERDDLAPYERMLFDTWG 294 ++ + D P D ++F +++ + H D A + Sbjct: 92 LVFHSWIHDDAKPDPGFIAPDHNLFPWFAKMFHLGKVVQFS-HLDDLPAEAATDITALLA 150 Query: 295 NQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNL-NLLRQIAERVAIAVDN------- 346 +I++ +P+ G + G L LA L LR + E A A+ Sbjct: 151 LRIKSQVSVPISVGGHVFGTLSLATVRSYRSWPDELVPRLRLVGEIFANALVRKQKELQI 210 Query: 347 ALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVL 406 A+Q+I L E L + L E++ +++ + IIG+S + VL +++ +A +D+TVL Sbjct: 211 RKAFQQIKELNEELAADCTYLREEI-DLNYDVHHIIGQSLPLKRVLAKIQQIALTDTTVL 269 Query: 407 ILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRI 466 ILGETGTGKEL+ARAIH S R +R MVK+NCA++PA L+ES+LFGHE+GAFT A ++I Sbjct: 270 ILGETGTGKELVARAIHAASQRRDRPMVKVNCASLPANLIESELFGHEKGAFTSAQVRQI 329 Query: 467 GRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLK 526 GRFE AD+++LFLDE+G++PLE Q KLLRVLQE EFERLGS++ ++ DVR++AATNRDL+ Sbjct: 330 GRFEFADRNTLFLDEIGELPLESQAKLLRVLQEGEFERLGSSRTLKVDVRIVAATNRDLE 389 Query: 527 KMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETL 586 + V FR DL+YRLN+FPI +PPLRER EDIPLL F K R+LG++I IPA + Sbjct: 390 EEVRKGRFRQDLWYRLNIFPITVPPLRERTEDIPLLINLFVNKFGRKLGKSIRRIPAGVM 449 Query: 587 RTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGEDEY 646 ++L +WPGNVRELENVIERA + T G LQ L D + T A E E Sbjct: 450 KSLQAYDWPGNVRELENVIERAAINTVGPSLQ--LLDNLKSSLVTEKTAAPRLTLEEAER 507 Query: 647 QLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 I++VL +TNG + GPKGAA LG+ +TL +RM++LGI Sbjct: 508 SHILQVLADTNGRIEGPKGAALILGINHSTLRARMRKLGI 547 >UniRef50_C7LX45 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LX45_DESBD Length = 529 Score = 564 bits (1453), Expect = e-159, Method: Composition-based stats. Identities = 171/518 (33%), Positives = 280/518 (54%), Gaps = 26/518 (5%) Query: 185 DNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLD 244 R+L+AI+ + LD++ + + K + + ++ L +L I +++ L Sbjct: 8 TELRVLLAISKVIDQALDLESALESILKILSDTMSMRRATVTLYDPLSGRLAISTSYGLS 67 Query: 245 KQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLP 304 +DE +T +F++ + ++ + L + +I + +P Sbjct: 68 ALEKQRGVYRMDEG--ITGIIFRTAKPYVVPDISLEPLFLDKTGTRRISQERI-SFVGVP 124 Query: 305 LMSGDTMLGVLKLAQ-CEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDE 363 ++ + +GV+ + + + + L +A ++ + +++ + + L E Sbjct: 125 ILLHGSPIGVMNVDRVFTGQEQLDADTEFLTVVATLISQFLS---LNEKVKKREAALKQE 181 Query: 364 NLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIH 423 N +L Q+ ++ I+G+S+AM V + V VA + +TVL+LGE+GTGK LI R IH Sbjct: 182 NTSLKYQIAR-ENHGPYIVGKSQAMLEVEQYVAKVAITKATVLLLGESGTGKTLIGRIIH 240 Query: 424 NLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVG 483 LS R +K+NCAA+P LLE++LFG+E+GAFTGA++ + GRFE A ++FLDE+G Sbjct: 241 ELSDRKTHPFIKVNCAAIPENLLEAELFGYEKGAFTGANSTKPGRFEDAHLGTIFLDEIG 300 Query: 484 DMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLN 543 ++PL LQ KLLRVLQE+EFER+GSNK + DVR+I+ATNR+L+ +V FR DLYYRLN Sbjct: 301 ELPLTLQSKLLRVLQEREFERIGSNKTRKVDVRIISATNRELEALVGHGLFREDLYYRLN 360 Query: 544 VFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELEN 603 VFP+H+P +RER EDIP L F ++ R GR++ ++ L L +WPGNVRELEN Sbjct: 361 VFPVHVPAVRERKEDIPRLLNHFQKEMEREYGRSL-TLTTGALDLLLAYDWPGNVRELEN 419 Query: 604 VIERAVLLTRGNVLQLSL------PDIVLPEPETPPAATVVALEGED--------EYQLI 649 ++ER V+LT ++ L P+ P P E ED E + + Sbjct: 420 LVERLVILTDDKPVEAELVRGFLTPETHRPGPARHAPEPPAHPEQEDYCQPLKETERREV 479 Query: 650 VRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 + LK + AA+ L L + R+++ ++ Sbjct: 480 LAALKRNAWIQY---KAARELNLTPRQMGYRVRKFNLE 514 >UniRef50_A0LFR7 Transcriptional regulator, NifA subfamily, Fis Family n=7 Tax=Deltaproteobacteria RepID=A0LFR7_SYNFM Length = 508 Score = 564 bits (1453), Expect = e-159, Method: Composition-based stats. Identities = 181/512 (35%), Positives = 262/512 (51%), Gaps = 22/512 (4%) Query: 185 DNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLD 244 + R L I V ++ + + + + ++ + + + + + +D Sbjct: 8 EELRTLHEIARVVSRSAELKDQLQQTLDILSSRLGMERGMVSVLDLQTGEAWLDVARGVD 67 Query: 245 KQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLP 304 + +T +V +S + I + L + + +P Sbjct: 68 VE---RGTIRYRPGEGITGKVAQSGRPMGIANLGDEALFLDRTGARRSLNREELAFLCVP 124 Query: 305 LMSGDTMLGVLKLAQCEEKVFT-TTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDE 363 + +GVL + +V + +L +AE + V + +E Sbjct: 125 IFYQGRSVGVLSADKLARRVEDLDKEVEILSAVAELLGKVVHF-----------RAVEEE 173 Query: 364 NLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIH 423 N L L IIGRS+ + VL+ ++ VA +++TVLI GETGTGKEL+ARAIH Sbjct: 174 NSRLRRMLAEARRPTTNIIGRSKVIQEVLRAIDQVADTNTTVLISGETGTGKELVARAIH 233 Query: 424 NLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVG 483 + S R +V++NCAAMP LLES+LFGHE+GAFTGA +R GRFE A ++FLDEVG Sbjct: 234 DNSRRAKGPLVQVNCAAMPDTLLESELFGHEKGAFTGAVTRRRGRFEEAQGGTIFLDEVG 293 Query: 484 DMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLN 543 ++ Q KLLRVLQE+EF+ LGS++ ++ DVR+I A+N+DL+K VA FRSDLYYRLN Sbjct: 294 ELSPIAQAKLLRVLQEREFQPLGSSRTVKVDVRVITASNKDLEKEVALGTFRSDLYYRLN 353 Query: 544 VFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELEN 603 VFPI LPPLRER DI LLA F K AR L +++ I + L WPGNVRELEN Sbjct: 354 VFPIFLPPLRERGPDILLLADYFVLKYARELDKDVKRITTSAIDMLMCYHWPGNVRELEN 413 Query: 604 VIERAVLLTRGNVLQ-LSLPDIVLPEP---ETPPAATVVALEGEDEYQLIVRVLKETNGV 659 IERAVLL GN + LP + +P + + AL E LI LK+ G Sbjct: 414 CIERAVLLAGGNAVDSWHLPPTLQMKPVGMQNVSRGKLEALVSAFERDLITDALKDVRG- 472 Query: 660 VAGPKGAAQRLGLKRTTLLSRMKRLGIDKSAL 691 AA+ LG + + ++++ GID Sbjct: 473 --NQSQAARLLGTTKRIVQYKVEKYGIDPRRF 502 >UniRef50_B8FLD5 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FLD5_DESAA Length = 1035 Score = 563 bits (1451), Expect = e-159, Method: Composition-based stats. Identities = 192/570 (33%), Positives = 300/570 (52%), Gaps = 20/570 (3%) Query: 125 LAAEGHIFGGCEFIRYDDRPWSEKEFNRLQTFTQIVSVVTEQIQSRVVNNVDYELLCRER 184 ++ ++R P + + +Q ++ + E++ + ++ + Sbjct: 482 MSLIRSRLETARYLRKIGDPGAGDKLT--TQVSQSLASMDEKLVPDDLRHMVSRD-GNSK 538 Query: 185 DNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHR---KNKLNIYSTH 241 R ++ + ++ D ELV + + + +I + K +L + ++ Sbjct: 539 KLLREILELGQELVKIRDYHELVQRIISTGNRVTGAERGAIFMSEKGNSGKEELRLKASR 598 Query: 242 YLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLC 301 L H A+ + + E V S L+ + D + IQ+ Sbjct: 599 NLTSDHVANPSFV--SSMKMIEMVAASGRGLIAGVESTDTEGY-------SSEGAIQSKI 649 Query: 302 LLPLMSGDTMLGVLKLA-QCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERL 360 +PL D ++GVL + F +L++L + AIA+DNA AY +I R +L Sbjct: 650 CVPLCLHDQVVGVLYHDNRLLASAFREEDLDVLSYFSALAAIALDNARAYDQIRRWNIKL 709 Query: 361 VDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIAR 420 E E+ + +F EI+G S A+ VL ++E VA +++TVLI GETG GKEL+AR Sbjct: 710 SREKQYY-EEAHLSYLQFDEIVGHSPAINEVLSKIEQVANTETTVLITGETGVGKELVAR 768 Query: 421 AIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLD 480 AI S R + + + +A+P L+ S+L GHE+GAFTGA+ ++ GR ELAD +LFLD Sbjct: 769 AIQKHSSRAQQPFIGVQLSALPKDLMASELLGHEKGAFTGATHRQAGRLELADGGTLFLD 828 Query: 481 EVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYY 540 E+GD+ ++Q +LLRVLQ ++FER+G K + +D RLIAATNR+L+ +V D FR+DLYY Sbjct: 829 EIGDISHDIQIRLLRVLQTRQFERVGGMKTLSSDFRLIAATNRELESLVRDGRFRADLYY 888 Query: 541 RLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRE 600 RLNVFPI++PPLR+R EDIPLLA F A +L + + I + L +WPGNVRE Sbjct: 889 RLNVFPIYVPPLRDRREDIPLLAMHFLKLHAAKLNKQVMRISDREMDMLKEYDWPGNVRE 948 Query: 601 LENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVV 660 L+NV+ER V+L+ +P+ + P A E+E I+R+LK T V Sbjct: 949 LKNVVERGVILSTNR--DFRMPE-LQSGDCPPLTVGDTATLAENERSHILRILKRTGWKV 1005 Query: 661 AGPKGAAQRLGLKRTTLLSRMKRLGIDKSA 690 AG GAA+ L + +TL RM +LGI + Sbjct: 1006 AGASGAAKILDIPPSTLSFRMNKLGIKRPG 1035 >UniRef50_A6EHB3 Sigma-54-dependent transcriptional regulator n=1 Tax=Pedobacter sp. BAL39 RepID=A6EHB3_9SPHI Length = 664 Score = 563 bits (1451), Expect = e-158, Method: Composition-based stats. Identities = 213/678 (31%), Positives = 342/678 (50%), Gaps = 51/678 (7%) Query: 26 DLASLCEALSQLVKRSALADNAAIVLWQAQTQ--RASYYASREKDT--PIKYEDETVLAH 81 +L E L + + D A+VL+ + + R Y + + ++ +++ Sbjct: 23 NLREFLEVLVRKLCPLFSIDCVALVLYDEKLEYIRNMYCSVPPVNGMRNVEVMTKSLGLS 82 Query: 82 GPVRSILSRPDTLHCSYEEFCETWPQ---LDAGGLYPKFGHYCLMPLAAEGHIFGGCEFI 138 G I + S++E+ + + + + GL K+ C +PL I G E + Sbjct: 83 GITAEIAGYQFPVLKSHDEWVDGYGENHCVSQQGLQYKYH--CYIPLEINNMILGTLE-L 139 Query: 139 RYDDRPWSEKEFNRLQTFTQIVSVVTEQIQ--SRVVNNVDYELLCRERD--NFRILVAIT 194 DD+ S++ + T +++ + + ++ ++ + + +R ++ L+A++ Sbjct: 140 HNDDKHLSQEGMSFCCTLADLLAELVDSKLPALQMPAHLVTDNVEEDRGVPHYAALIALS 199 Query: 195 NAVLSRLDMDELVSEVAKEIHYY-FDIDDISIVLRSHRKNKLNIYSTHYLDKQHPAHEQS 253 NA+L D +L V +++ + F D + I H Sbjct: 200 NALLLVSDEVQLEEVVGRQLLQFSFIADHLLIYPVDHIAEH------------------- 240 Query: 254 EVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLG 313 + + V + ++I + + L + + + M DT L Sbjct: 241 ------AVFDNVISAGVPVIIPARDMRSVPVLSEWLVEAHDDVVVGTA----MYQDTALL 290 Query: 314 VLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNN 373 L + + K + L L+ IA ++ +A++N QE+ + Sbjct: 291 GLLYLRLKNKEQSAPLLELIGAIAAQLTLALNNLRYRQELAAGTA------FFPLTAQDR 344 Query: 374 VDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRM 433 ++ F EI+G S M V + VA S +TVLILGETG GKELIA AIH S R R+M Sbjct: 345 LEYAFPEIVGGSPQMQEVFNLMGQVAPSTATVLILGETGVGKELIAGAIHQASDRAERQM 404 Query: 434 VKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKL 493 V++NCAA+PA L+ES+LFGHE+G+FTGA+ +R G+FELAD+S++FLDE+G++ L+LQ KL Sbjct: 405 VRINCAAIPANLIESELFGHEKGSFTGATDRRTGKFELADQSTIFLDEIGELSLDLQVKL 464 Query: 494 LRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLR 553 LRVLQE+EFER+G + I DVR+IAATNR+L V FR DLYYRLNVFPI LP LR Sbjct: 465 LRVLQEKEFERIGGSGTISVDVRVIAATNRNLLDEVEAGRFRMDLYYRLNVFPISLPSLR 524 Query: 554 ERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTR 613 +R DIPLLA F + + G+ I + + + WPGN+RELE++IER V+LT Sbjct: 525 DRRADIPLLANFFLERYKMKSGKKISGFSQKVMSAMMKYRWPGNIRELEHLIERQVILTE 584 Query: 614 GNVL-QLSLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGL 672 G ++ L +P T + ++E I VL+ NG ++G GAA+ LG+ Sbjct: 585 GTLIRDLDIPAAHQVMATDGSGQTEIKTIAQNERDHIFSVLRLCNGKISGKNGAAKLLGV 644 Query: 673 KRTTLLSRMKRLGIDKSA 690 TTL S++K+LG+ + Sbjct: 645 PATTLNSKIKKLGLSRQH 662 >UniRef50_Q3AR86 DNA-binding protein Fis / transcriptional regulator, Fis family n=11 Tax=Chlorobiaceae RepID=Q3AR86_CHLCH Length = 549 Score = 562 bits (1450), Expect = e-158, Method: Composition-based stats. Identities = 168/543 (30%), Positives = 276/543 (50%), Gaps = 41/543 (7%) Query: 181 CRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYST 240 + + +L ++ + D+++++ V + + I + + ++ I + Sbjct: 6 QNDYGSISLLAEVSRTITHEEDINKVLRLVLFIMSENMHMQRGMITILNRSTGEIVINES 65 Query: 241 HYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTL 300 L ++ + + E + V K+ + +++ + + L + Sbjct: 66 FGLTEEERERGRYHIGEG--VIGHVVKTGKAVIVPSIQDEPLFLDRTGSRAQAKKEELCF 123 Query: 301 CLLPLMSGDTMLGVLKLAQCEEKVFTTTN--------------------LNLLRQIAERV 340 +P+ +G ++G L + E V + ++ L IA + Sbjct: 124 ICIPIKAGSEIIGTLSADRHVEPVTADEHRRKTRQTDDRDERIDKLQFYVDQLSIIAAMI 183 Query: 341 AIAVD-NALAYQEIHRLKERL------------VDENLALTEQLNNVDSEFGEIIGRSEA 387 + AV LAY+ + + L E+ + IIG ++ Sbjct: 184 SQAVRLKQLAYEAGSKNVQDLSNLPPFAASIPPRSEDRQVNAIPPPSPDRPANIIGNTKP 243 Query: 388 MYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLE 447 M S+ ++ +A++ +T L+LGE+G GKEL+A AIH S R + +K NCAA+P ++E Sbjct: 244 MVSLYSMIDKIAKTSATTLVLGESGVGKELVASAIHFKSRRAEKPFIKFNCAALPENIVE 303 Query: 448 SDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGS 507 S+LFGHE+GAFTGA A R GRFE+A+ ++FLDEVG++ L +Q KLLR+LQE+EFER+G Sbjct: 304 SELFGHEKGAFTGALATRHGRFEMANNGTIFLDEVGELSLSVQAKLLRILQEKEFERVGG 363 Query: 508 NKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFT 567 +K I+ DVR+IAATNR+L++++ +FR DL+YRLN+FPI +PPLRER DI LLA F Sbjct: 364 SKTIKVDVRVIAATNRNLEELIRQGQFREDLFYRLNIFPITVPPLRERKTDILLLADYFV 423 Query: 568 FKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQ-LSLPDIVL 626 K + + + I + L WPGNVREL+N IERAV+L+ NV+ LP + Sbjct: 424 EKYNKANQKGVRRISTTAIDMLMRYHWPGNVRELQNCIERAVILSEDNVIHGYHLPPTLQ 483 Query: 627 PEPE--TPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRL 684 TP ++ E ++I+ LK T G ++ AA +LGL + R+K+ Sbjct: 484 TAESSGTPYTGSLQQKLDAIEKEMIIEALKRTQGNMS---RAAMQLGLSERIMGLRIKKF 540 Query: 685 GID 687 ID Sbjct: 541 NID 543 >UniRef50_B5ER80 Transcriptional regulator, NifA, Fis Family n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5ER80_ACIF5 Length = 545 Score = 562 bits (1449), Expect = e-158, Method: Composition-based stats. Identities = 179/543 (32%), Positives = 279/543 (51%), Gaps = 52/543 (9%) Query: 185 DNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLD 244 + ++ + S +D++ +++V K + + I IVLR + + + + L Sbjct: 11 QELTTIYEVSKVLSSSMDLEHTLNDVLKTLESHLHISPSMIVLR-MNEEIVGVIAATGLS 69 Query: 245 KQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLP 304 + + E + ++ ++ ++I ++ + R ++ +P Sbjct: 70 VAEIERGRYRLGEG--MIGKIMRAGMPIVIPDVSQEPAFLH-RAFEPEISQRLHAFVGVP 126 Query: 305 LMSGDTMLGVLKLAQCEE--KVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVD 362 + G +GVL + + E V +++ LL+ IA V V+ +Q I + RL+ Sbjct: 127 IKVGYECIGVLAIYRSERHKGVSFRSDVRLLQMIANLVGQTVN---LHQGISAERNRLLQ 183 Query: 363 ENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAI 422 E L ++L +IG S AM +V V A +TVL+ GE+GTGKE+IARAI Sbjct: 184 EKHRLQKELQK-RYSIKNVIGNSRAMQAVFADVHQAAPGKATVLLRGESGTGKEVIARAI 242 Query: 423 HNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEV 482 H LS R ++ V +NCAA+P +LES+LFGHERGAFTGA+ +R GRFELAD +LFLDE+ Sbjct: 243 HYLSPRRDKAFVSLNCAALPESILESELFGHERGAFTGATQERKGRFELADGGTLFLDEI 302 Query: 483 GDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRL 542 GD+ Q KLLRVLQE+EFER+G + + +VR+IAATNR+L++ V+ EFR+DLYYR+ Sbjct: 303 GDISPAFQAKLLRVLQEREFERVGGTQTRRVNVRIIAATNRNLEEAVSKGEFRADLYYRI 362 Query: 543 NVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELE 602 NV I LPPLRER EDIP L + F + R + ++ E L+T+ + WPGNVRELE Sbjct: 363 NVVSIFLPPLRERREDIPALIEHFLARYNAENQRKL-TLTPEALQTMVSCYWPGNVRELE 421 Query: 603 NVIERAVLLTRGNVLQ---------------------------------LSLPDIVLPEP 629 N +ER + RG++++ +S+P P+ Sbjct: 422 NCVERTATMMRGDIIRNLDVPCQRNQCLSMALRPLEGSHPIVTMKLSSGMSVPPHAAPDV 481 Query: 630 ETPPAATVVALEGE-----DEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRL 684 E A +GE E +++ + V A AA+ LG L + + Sbjct: 482 EGQVTDASGAGDGEGSLPLSERDRLIQAMDRCGWVQA---KAARLLGTTTRKLGYALNKH 538 Query: 685 GID 687 GI+ Sbjct: 539 GIE 541 >UniRef50_A0LH02 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LH02_SYNFM Length = 510 Score = 561 bits (1446), Expect = e-158, Method: Composition-based stats. Identities = 167/509 (32%), Positives = 270/509 (53%), Gaps = 12/509 (2%) Query: 181 CRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYST 240 ++ + L +D+ + + + + +I L L I ++ Sbjct: 4 RIRETELNVIFETCRVIGQALKLDQALDTILAILSSSLAMKRATITLEDEDTGYLIIRAS 63 Query: 241 HYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTL 300 H L DE +T +F+S + ++ ++ L + + + Sbjct: 64 HGLTDAERRRGVYRKDEG--ITGLIFQSADSYVVPDISKEPLF-LNKTRSRLIQKESISF 120 Query: 301 CLLPLMSGDTMLGVLKLAQ-CEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKER 359 +P++ +GVL + + ++V ++ LL +A +A V L Q R + Sbjct: 121 LGVPILLHGKAIGVLHVDRLFGDEVPFEEDIRLLSIVATLIAQFVS--LNRQVKLREAKL 178 Query: 360 LVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIA 419 L D + + + + D F ++GRS +M V + +E VA S ++VL+LGE+GTGK L+A Sbjct: 179 LRDCSPSGKKGIEAGDRFF--MVGRSPSMLVVQRHIEKVAPSKASVLLLGESGTGKTLVA 236 Query: 420 RAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFL 479 + +H LS R++ VK+NCA++P LLES+LFG+E+GAFTGA + GR E A+ ++FL Sbjct: 237 QMLHELSIRSSAPFVKINCASLPENLLESELFGYEKGAFTGAVRSKPGRIEEAEGGTVFL 296 Query: 480 DEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLY 539 DEVG++ LQ KLLR LQ++EFERLGS + DVR++AATNRDL +VA+ FR DLY Sbjct: 297 DEVGELTPALQAKLLRFLQDKEFERLGSTRTRVVDVRVLAATNRDLAAVVAEGTFREDLY 356 Query: 540 YRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVR 599 YRLNVFPI +PPLR R EDIP L F +I+R GR I I + L+ +WPGNVR Sbjct: 357 YRLNVFPIQIPPLRARKEDIPDLLHHFLDRISREYGRRI-GITNAAMALLAGYDWPGNVR 415 Query: 600 ELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGV 659 E+EN++ER V++ + + +++ L E T ++ + E + I+ L+ Sbjct: 416 EMENLVERMVIMADEDEIGVNVLPPFLSEQMTGSGGETLSRIEKMERKEILAALERNGW- 474 Query: 660 VAGPKGAAQRLGLKRTTLLSRMKRLGIDK 688 A+ LG+ + R+++ G+D+ Sbjct: 475 --NQTRTAKELGITLRQIGYRVRKFGLDR 501 >UniRef50_D0MEW0 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MEW0_RHOM4 Length = 495 Score = 560 bits (1445), Expect = e-158, Method: Composition-based stats. Identities = 178/506 (35%), Positives = 270/506 (53%), Gaps = 21/506 (4%) Query: 184 RDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRK-NKLNIYSTHY 242 R + LV I + + D + ++ +V + + + I+L++ + I S Sbjct: 7 RTSLDALVEIAQTINTLRDPEAVLEKVLEIAMETLEAERGFILLKAPQHPEGFAIRSQRN 66 Query: 243 LDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCL 302 Q V + ++ V + E +L+ ++D+ +IQ++ Sbjct: 67 FTDQQLGE---LVRISTSVVHEVLRRGEPVLVYEAQQDE---RYGKAESIVLQRIQSIAC 120 Query: 303 LPLMSGDTMLGVLKLAQC-EEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLV 361 +PL + ++G + L + FT NL L A + AIA++NA YQ L Sbjct: 121 VPLRIKERLIGAIYLDSLSQRGRFTRDNLPFLEAFAHQAAIAIENAQLYQ-------ALR 173 Query: 362 DENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARA 421 +EN L ++ + F EI+G+S AM V + V +D+TVLI GE+GTGKELIARA Sbjct: 174 EENRRLRSEIQRLHG-FDEIVGQSPAMREVFDTMARVLDTDATVLIEGESGTGKELIARA 232 Query: 422 IHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDE 481 IH S R ++ V + C ++P LLES+LFG+++GAFTGA + + G FE+AD ++FLDE Sbjct: 233 IHYNSERKDKPFVVVFCGSLPDELLESELFGYKKGAFTGALSDKKGLFEVADGGTVFLDE 292 Query: 482 VGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYR 541 VGD+ +Q LLRVLQE E R+G ++ + DVR+I+ATN+ L+++V +FR DLYYR Sbjct: 293 VGDLSPRMQTALLRVLQEGEIRRVGDTQVRKVDVRVISATNKPLRELVQQGKFREDLYYR 352 Query: 542 LNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVREL 601 LN I +PPLR R DIPLLA F K A + +I E L L WPGNVREL Sbjct: 353 LNTIQITVPPLRHRRGDIPLLAHHFLDKYAVKKRAHIKGFTPEALELLERYHWPGNVREL 412 Query: 602 ENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVVA 661 EN IERAV+L RG ++ D+ LP+ + E E ++++R LK G ++ Sbjct: 413 ENTIERAVVLARGELITPE--DLRLPDTDGADPFEPDLPLKEVERRVVLRTLKRHGGNIS 470 Query: 662 GPKGAAQRLGLKRTTLLSRMKRLGID 687 A+ LG+ R L ++K + Sbjct: 471 ---ETARVLGVSRRWLHYKLKEWDVQ 493 >UniRef50_B8FJT8 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=B8FJT8_DESAA Length = 464 Score = 557 bits (1437), Expect = e-157, Method: Composition-based stats. Identities = 179/432 (41%), Positives = 241/432 (55%), Gaps = 24/432 (5%) Query: 275 NLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLR 334 H D A L + + + T +P M G +L L+ + + T +R Sbjct: 33 RTHTATDGAEAVAELDKQFFDVVVTDLNMPGMDGMGVLKHLQKHSQDTQCLVLTGFGSIR 92 Query: 335 QIAERVAIA----VDNALAYQEIHRLK------ERLVDENLALTEQLNNVDSEFGEIIGR 384 E + + + + + E+ +RL EN L +QL F +G Sbjct: 93 NSVEAIKMGAFDYITKPVKFDELLHSVSTAIKFKRLERENTILKKQLKK-KYRFENFVGD 151 Query: 385 SEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 444 S + V + +E VA +DSTVLI GE+GTGKELIARAIH S R + MV +NC A+P Sbjct: 152 SPQIQRVFELIEKVADTDSTVLITGESGTGKELIARAIHYNSPRRDDPMVIINCGAIPEE 211 Query: 445 LLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFER 504 LLES+LFGHE+GAFTGA RIGRFE+A+ ++FLDE+GDM LQ KLLRV+QEQ FER Sbjct: 212 LLESELFGHEKGAFTGAHKTRIGRFEVANGGTIFLDEIGDMSPNLQVKLLRVIQEQAFER 271 Query: 505 LGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAK 564 +GS + + D+R++AATN+DL + V +EFR DLYYRLNV PI +PPLR+R DIPLL Sbjct: 272 IGSTRTMHVDIRILAATNKDLMEAVEKKEFREDLYYRLNVIPIEVPPLRDRKSDIPLLID 331 Query: 565 AFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQ-LSLPD 623 F K+A R + I + L WPGNVRELENV+ER ++L+ G+ + LP Sbjct: 332 FFINKLAAEKERPVKRISQAAMNALMGHHWPGNVRELENVVERVLILSSGDTIDKEDLPA 391 Query: 624 IVLPEPETPPAATVVALEG---------EDEYQLIVRVLKETNGVVAGPKGAAQRLGLKR 674 +L P A + G E E LIV+ L+E N V AA+ L + R Sbjct: 392 TILGLDSKEPEAGLKLPSGGIRFDHAVEEYEKNLIVQALEEANWV---KTQAAKLLHINR 448 Query: 675 TTLLSRMKRLGI 686 TTL+ +MKR I Sbjct: 449 TTLVEKMKRKNI 460 >UniRef50_Q022Z3 Transcriptional regulator, Fis family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q022Z3_SOLUE Length = 705 Score = 557 bits (1436), Expect = e-157, Method: Composition-based stats. Identities = 225/533 (42%), Positives = 306/533 (57%), Gaps = 24/533 (4%) Query: 161 SVVTEQIQSRVV-NNVDYELLCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFD 219 S VTE++ V + E C +D R + S D D + A+ + + + Sbjct: 193 SYVTEELDRSVAEGHFGSEGWCMRQDGERFWGNVVTV--SLKDEDGKLQGFARVVRDFSE 250 Query: 220 IDDISIVLRSHRKNKLNIYSTHYLDKQHPAHEQSEVDEAG-TLTERVFKSKEMLLINLHE 278 + LR R +L ST L + E + EA E V ++E LL Sbjct: 251 RRERDEKLRGKRS-RLRTTSTDTLIAGIVSGEFDRIPEANDAFLELVGYTREDLLTGCLR 309 Query: 279 RDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAE 338 DL P E D ++ G + E + + +L A Sbjct: 310 WPDLTPPEYFALDELAHE-----------EGLRFGACAPYEKELIRKGGSRVQVLVATAV 358 Query: 339 RVAIAVDNALAYQEIHRLKERL-VDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEM 397 QE+ RL V E TE++ + +EF EI+GRS AM VL Q+E+ Sbjct: 359 LKLAPFRWISFVQELSAFDRRLPVAETGEFTEEIVVLKNEFVEIVGRSAAMNRVLGQIEL 418 Query: 398 VAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGA 457 VA +++TVLILGETGTGKEL+ARA+H +S R +R V +NCAA+P GLLES+LFG+ERGA Sbjct: 419 VAPTNATVLILGETGTGKELVARAVHQMSPRRDRPFVTLNCAAIPTGLLESELFGYERGA 478 Query: 458 FTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRL 517 FTGA +Q+IGRFE+A++ +LFLDEVGD+PL+LQPKLLR LQE+ FERLG K I DVRL Sbjct: 479 FTGALSQKIGRFEMANRGTLFLDEVGDIPLDLQPKLLRALQEKSFERLGGTKTIPIDVRL 538 Query: 518 IAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRN 577 +AATNR+L +M+ D+ FRSDLYYRL VFPI PLR+ PEDIP+LA+ F K AR +G+ Sbjct: 539 VAATNRNLTQMMGDKLFRSDLYYRLKVFPITTSPLRDHPEDIPILARHFMQKYAREMGKQ 598 Query: 578 IDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATV 637 ID+IP + L+ L WPGNVRELEN IERAV+LT+G+ L+ L +I E P +T+ Sbjct: 599 IDTIPPDALQALVKWPWPGNVRELENFIERAVILTQGSSLRAPLAEIRPDAAELPGDSTL 658 Query: 638 VALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSA 690 + E ++++L ET V++ AA RLG+ RTTL + M +LGI + Sbjct: 659 EFV----ERAHLLKILGETGWVIS---KAAARLGMPRTTLNAMMGKLGISRKD 704 >UniRef50_A5G4X7 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Geobacter uraniireducens Rf4 RepID=A5G4X7_GEOUR Length = 726 Score = 557 bits (1436), Expect = e-157, Method: Composition-based stats. Identities = 233/694 (33%), Positives = 346/694 (49%), Gaps = 46/694 (6%) Query: 16 DITRTLLQQPDLASL-CEALSQLVKRSALADNAAIVL--WQAQTQRASYYASREKDTPIK 72 ++R + DL AL + + + D +++ RAS+ E Sbjct: 45 SMSRIITVSADLVDREIAALLRQMLTTCGFDRCGLMMLTQDKTEVRASHACHGE-GIAAV 103 Query: 73 YEDETVLAHGPVRSILSRPDTLH---CSYEEFCETWPQLDAGGLYP---KFGHYCLMPLA 126 E T+ P + + LH S+ E P +A Y +P+ Sbjct: 104 PETYTLRDLFP----WTGENLLHGNIVSFSSLAELPPLAEADRRNYAALGVQSYLAIPIY 159 Query: 127 AEGHIFGGCEFI--RYDDRP---WSEKEFNRLQTFTQIVSVVTEQIQSRVVNNVDYELLC 181 A G EF + R WS++ + L+ F ++ + + + L Sbjct: 160 AG----GSVEFFIDAHHVRARHIWSKESISLLRLFGEVCA---NALGGGHDTRNEEVRLQ 212 Query: 182 RERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTH 241 ER + V N +D + + +++ F D ++ S K + + Sbjct: 213 FERFVSDLSVKFINVTADEVDRE--IIAALEQVREMFQFDGFGLISLSPDKGEAIVSHAC 270 Query: 242 YLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGN-QIQTL 300 Y + + E+ ++ T+ EM I+ + R+D+ + +W +++ Sbjct: 271 YGEGIERSPEKIDISLRFPWTKERLLRGEM--IHFNSREDVPEDAAVDRQSWQAMKVKAN 328 Query: 301 CLLPLMSGDTMLGVLKL-AQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQE------- 352 +P++ ++ ++ + L LR + E A A+ + E Sbjct: 329 FSIPILVAGSVAYIIAAHDVRATRCLDEGLLLRLRLLGEIFANALFRCKSEAEFRNSCTE 388 Query: 353 IHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETG 412 I RLKE+L E L ++ +IIG+S A+ VL+ VE VA +DSTVLI GETG Sbjct: 389 IQRLKEKLQLEAEYLQTEIICSHCN-EQIIGQSAALDKVLRLVEQVASTDSTVLICGETG 447 Query: 413 TGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELA 472 TGKEL+ARAI LS R N+ +VK+NCA++PA L+ES+LFG E+GA+TGA ++ GRFE+A Sbjct: 448 TGKELVARAIQELSLRRNKPIVKVNCASLPAALVESELFGREKGAYTGALTRQAGRFEVA 507 Query: 473 DKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADR 532 D +++FLDE+ +M ELQ KLLRVLQE +FERLGS K I DVR+IAATNR+L + V Sbjct: 508 DGATIFLDEISEMSPELQAKLLRVLQEGQFERLGSTKTIHVDVRVIAATNRNLAEEVKKG 567 Query: 533 EFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNM 592 FR DLYYRLNVF I +PPLRER EDIPLLA AF + ++G+ I+ I + L N Sbjct: 568 TFREDLYYRLNVFQIVVPPLRERAEDIPLLAWAFVHEFNEKMGKKINRIAKSDMNALQNY 627 Query: 593 EWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGEDEYQLIVRV 652 WPGNVREL NVIE V+++ GN L + LP+ E P L E E Q I V Sbjct: 628 HWPGNVRELRNVIEYGVIVSTGNGLHVRLPEGSGEEIARP------LLMDEVERQHITGV 681 Query: 653 LKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 L+ T + G GAA+ LG+ +TL SRM++LGI Sbjct: 682 LQRTGWRIKGENGAARILGMNPSTLYSRMQKLGI 715 >UniRef50_A1ALJ3 Sigma-54 factor, interaction domain-containing protein n=5 Tax=Desulfuromonadales RepID=A1ALJ3_PELPD Length = 517 Score = 556 bits (1433), Expect = e-156, Method: Composition-based stats. Identities = 185/508 (36%), Positives = 285/508 (56%), Gaps = 12/508 (2%) Query: 185 DNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLD 244 + +T + S L++ + + +F +D +S+ + + + + D Sbjct: 3 NRDEFFREVTVRICSSLEIKTALRSAFTYLREFFPLDMLSLGICDASLSAIRRVAHVTAD 62 Query: 245 KQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLP 304 E V + + ++ + ++++ D + R L + LLP Sbjct: 63 STETHDEIIPVPGQLWASLQRWEMRSPVMVD----SDQSGLVRALAPHLKLDENSGILLP 118 Query: 305 LMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDEN 364 L SG+ MLG L L F ++ LL +A+ IA+ NALA++++ R ++ L+D+N Sbjct: 119 LWSGEGMLGWLTLYAWGAGRFDAGHVALLATVADPFVIALANALAHEKLLRYRDNLIDDN 178 Query: 365 LALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHN 424 L+++L EI+G + + V++ V VA ++TVL+LGETGTGKELIA AIH+ Sbjct: 179 RFLSKELFTQGG--DEIVGANLGLRHVMEMVRQVAPLNNTVLLLGETGTGKELIANAIHS 236 Query: 425 LSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGD 484 S R + ++K+NC A+P L++S+LFGHE+GAFTGA +R GRFE AD ++FLDE+G+ Sbjct: 237 ASPRKDGPLIKVNCGAIPEQLIDSELFGHEKGAFTGAVTERRGRFERADGGTIFLDEIGE 296 Query: 485 MPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNV 544 +PL+ Q +LLRVLQ E +R+G ++ I D+R+IAAT+R+L+ M+A+ FR DL++RLNV Sbjct: 297 LPLQAQVRLLRVLQNHEIDRVGGSRPIPVDIRVIAATHRNLESMIAENRFREDLWFRLNV 356 Query: 545 FPIHLPPLRERPEDIPLLAKAFTFKIARRLGR-NIDSIPAETLRTLSNMEWPGNVRELEN 603 FP+ +PPLR+R EDIP L + F + R LG + I L L WPGNVRELEN Sbjct: 357 FPLFIPPLRQRREDIPGLTRHFISQKCRELGMAAMPDIAPGALVRLMEYAWPGNVRELEN 416 Query: 604 VIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGEDEY-----QLIVRVLKETNG 658 ++ER ++L RG LQ P +E E + + RVL T G Sbjct: 417 LVERELILHRGGTLQFDALMPAARRGNAPVQREAPGVEEGLELDQAISRHLRRVLDLTGG 476 Query: 659 VVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 + G GAA+ LG+K +TL R+ RLGI Sbjct: 477 RIHGRGGAAELLGVKPSTLRWRLDRLGI 504 >UniRef50_D2QGL7 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Flexibacteraceae RepID=D2QGL7_9SPHI Length = 488 Score = 556 bits (1433), Expect = e-156, Method: Composition-based stats. Identities = 195/417 (46%), Positives = 275/417 (65%), Gaps = 6/417 (1%) Query: 275 NLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLR 334 L + P + I + + + D + +L + ++ T +L L+ Sbjct: 75 RLKQNPATQPIPVLFMTALSETIDKVNGFNMGAVDYITKPFQLQEVLSRIHTHLSLRRLQ 134 Query: 335 QIAERVAIAVDNAL--AYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVL 392 Q E++ AL A E+ RLK++L EN L E++ F EI+ +S+A VL Sbjct: 135 QSMEQLVAERTQALTKALAEVERLKDQLQAENTYLREEIKQTK-NFDEIVTQSKAFQKVL 193 Query: 393 KQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFG 452 + VE VA +++TVLILGE+GTGKEL+ARA+HNLS R N+ +VK+NCAA+PA L+ES+LFG Sbjct: 194 RSVEQVAPTNTTVLILGESGTGKELLARAVHNLSSRKNKPLVKINCAALPATLIESELFG 253 Query: 453 HERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQ 512 HE+GAFTGA+AQ++GRFELAD ++FLDE+G+MPL+LQ KLLRVLQE EFER+GS K ++ Sbjct: 254 HEKGAFTGATAQKVGRFELADGGTIFLDEIGEMPLDLQAKLLRVLQEGEFERVGSTKTMK 313 Query: 513 TDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIAR 572 +VR+IAATNRDL+ A+ FR DLYYRL+VFPI PLR R EDIPLL + F K Sbjct: 314 VNVRVIAATNRDLEIESAEGRFREDLYYRLSVFPIVSLPLRTRKEDIPLLVRHFCAKHGA 373 Query: 573 RLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETP 632 +G+ ID+IPA L TL++ WPGN+RELEN+++RA++++ G L + D + +P Sbjct: 374 DMGKTIDTIPATVLDTLTDYHWPGNIRELENLVQRALIMSPGRTLVIG--DWLRKKPLAN 431 Query: 633 PAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKS 689 AT++ +E E E I+ VL+ T+ V+G GAA+ L + TTL SRMK+LGI + Sbjct: 432 QKATLMTME-EAERAHIISVLELTHWKVSGDNGAARLLDMIPTTLDSRMKKLGIRRP 487 >UniRef50_B5YH04 Transcriptional regulator n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YH04_THEYD Length = 511 Score = 556 bits (1433), Expect = e-156, Method: Composition-based stats. Identities = 173/509 (33%), Positives = 277/509 (54%), Gaps = 24/509 (4%) Query: 179 LLCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIY 238 + + + L ++ + S D+ + + V + + D+ SI + + +++I Sbjct: 1 MTRHKNIELKALFEVSRVLTSSFDLAQNLYSVLEILSKELDMRRGSIFIFDKKTEEISIV 60 Query: 239 STHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQ 298 + + L ++ + + + E + +V ++ + I E++ + + Sbjct: 61 AAYGLTQEEMSRGRYRIGEG--IVGKVIETGLPMFIPDIEKEPQFLNKTGSRP--NKKGI 116 Query: 299 TLCLLPLMSGDTMLGVLKLAQ--CEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRL 356 + +P+ D +LGV+ + EE+ +L +L +A + + +Y Sbjct: 117 SFLCVPIRIEDEILGVISADRIYAEEQGDVDDDLRVLSVVASLIGQFIKLWESY------ 170 Query: 357 KERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKE 416 + + DEN+ L QL + F ++G+S + +VLK V VA +D+TVL+ GE+GTGKE Sbjct: 171 -KIMEDENIILRAQLKD-RYNFPNLVGQSPSFQAVLKTVMKVASTDATVLLFGESGTGKE 228 Query: 417 LIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSS 476 LIA+ IH S R V +NCAA+P LLE++LFG E+GAFTGA RIG+FE A+ + Sbjct: 229 LIAKTIHFQSKRAKGPFVAINCAAIPENLLEAELFGSEKGAFTGAVK-RIGKFEQANGGT 287 Query: 477 LFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRS 536 +FLDE+ ++PL LQPKLLRVLQE+ E LGS+K I+ DVRLI+ATN+DL + + FR Sbjct: 288 IFLDEIAELPLSLQPKLLRVLQERTVEPLGSSKTIRVDVRLISATNKDLSEEIRKGNFRE 347 Query: 537 DLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPG 596 DL++RLNV PI++PPLRER EDIPLL + + +++ SI E L+ L + +WPG Sbjct: 348 DLFWRLNVIPIYIPPLRERKEDIPLLVEYYLKSFCNIYRKSV-SIDEEALKVLVSYDWPG 406 Query: 597 NVRELENVIERAVLLTRGNVLQL-SLPDIVLP----EPETPPAATVVALEGEDEYQLIVR 651 NVREL N IER V++T + +++ LPD V +P + + E E I+ Sbjct: 407 NVRELANTIERLVVMTESSKIKVYDLPDTVRGVFKLKPYSLGDLKLPTEVEELERIRIMD 466 Query: 652 VLKETNGVVAGPKGAAQRLGLKRTTLLSR 680 L + N + + AQ LGL L R Sbjct: 467 TLPKFNFNI---RKTAQALGLTERQLNYR 492 >UniRef50_C8X5B4 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X5B4_DESRD Length = 522 Score = 554 bits (1428), Expect = e-156, Method: Composition-based stats. Identities = 186/517 (35%), Positives = 280/517 (54%), Gaps = 7/517 (1%) Query: 176 DYELLCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKL 235 + + L+ I NA++ + + L ++ EI+ + D SI L H L Sbjct: 9 ATRVTLNPTRRYETLLRINNAIVQQTTRESLFQALSNEIYQLIEYDRFSINLYDHELRSL 68 Query: 236 NIYSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGN 295 + +++ + + E G + + V ++KE L+I + Y + + Sbjct: 69 SYFAS--AKGVSLGGKMTRPLEKGLIAQTVIRTKEPLIIPDVKNQS---YFSNMNNMIEA 123 Query: 296 QIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHR 355 + PL+ DT+LG L + + ++ +VAIAV N LA+ + R Sbjct: 124 GLNVTMGYPLIVRDTVLGSLHFSFKNRPDNLDEVNSFFEDLSPQVAIAVYNILAHNRLKR 183 Query: 356 LKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGK 415 L E L +E L ++ + + +SE+M V++QV+ VA SD+ VLI GETGTGK Sbjct: 184 LNESLKNEKKFLKKEAHG-SFDPENFFYKSESMSDVMQQVKNVAASDAPVLITGETGTGK 242 Query: 416 ELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKS 475 E IA IH+ S R++ +VK+NC A+ + L ES+LFGH +GAFTGAS QRIGRFE+A+ Sbjct: 243 EYIAHCIHHTSLRSDALLVKVNCPALASSLFESELFGHTKGAFTGASQQRIGRFEMANNG 302 Query: 476 SLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFR 535 ++FLDE+ ++P+ Q K+L VLQ++ FER+G ++ I D R++AATN+DL + + FR Sbjct: 303 TIFLDEIAELPMPQQAKILHVLQDRCFERVGESRSISADFRIVAATNKDLLHAIHNESFR 362 Query: 536 SDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWP 595 SDLYYRLN IH+P LRERPEDIP+L + +I++RL R + L +L WP Sbjct: 363 SDLYYRLNTAQIHIPSLRERPEDIPVLVINLSDQISKRLHRPSPKYSDKVLESLCQYPWP 422 Query: 596 GNVRELENVIERAVLLTRGNVLQLSLPDIVLPEP-ETPPAATVVALEGEDEYQLIVRVLK 654 GNVREL+N + R L ++LS L E + E E Q IV L+ Sbjct: 423 GNVRELKNFVHRMFLQRSAENVKLSDVKSYLGNSQEIEYNDNNILPMHEMEKQHIVNALR 482 Query: 655 ETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSAL 691 GV++G GAA L +KR+TL R+KR I+ S Sbjct: 483 ICKGVLSGENGAASLLQMKRSTLQYRLKRHNINPSDY 519 >UniRef50_C1SIC3 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SIC3_9BACT Length = 540 Score = 548 bits (1413), Expect = e-154, Method: Composition-based stats. Identities = 166/536 (30%), Positives = 275/536 (51%), Gaps = 39/536 (7%) Query: 184 RDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYL 243 + + I+ + S + + ++ ++ I+L N+L + ++ L Sbjct: 8 KTALNTIYEISVILNSSNMIQHSLYRSLLQMSDTLSMERGLILLHDKDTNELFVEASIGL 67 Query: 244 DKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLL 303 D + + +VFK +LI +++ + + L + + + Sbjct: 68 DNDEGPVKNMRYKADEGVVGKVFKYGIPILIPDVQKEPMFLNK--LGRNAKKEEISFIAV 125 Query: 304 PLMSGDTMLGVLKLAQCEEKVFT-TTNLNLLRQIAERVAIAVDNAL----AYQEIHRLKE 358 P+ + GVL + + K+++ TT++++L+ IA +A + + I + K Sbjct: 126 PIKHQNQTYGVLAVDKVVSKMYSITTDVDILKMIATLMASFLHKVQFFTSEMEAIQQEKS 185 Query: 359 RLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELI 418 R+ +E L L ++ ++ ++G M VL +V+MV SDS VLI GE+GTGKE++ Sbjct: 186 RIEEEKLKLIGEVTQ-KYQYEGLVGSGRLMRKVLDKVQMVTASDSAVLIRGESGTGKEVV 244 Query: 419 ARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLF 478 A+ IH S R + V +NCAA+P L+ES+LFG+ +GAFTGA+ ++ G+FE AD ++F Sbjct: 245 AKTIHYNSNRRKKPFVAVNCAAIPGELIESELFGYSKGAFTGAAGEKKGKFEQADGGTIF 304 Query: 479 LDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDL 538 LDE+GDMP+E Q KLLRVLQ++ E+LG K +Q DVR++AATN++L+ V EFR DL Sbjct: 305 LDEIGDMPMEAQSKLLRVLQDKVVEKLGGTKPVQVDVRILAATNKNLEAAVQSGEFRLDL 364 Query: 539 YYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNV 598 YYRLNVF I LPPLR+R EDIP +A+ +++R +N +I E + L N +PGN+ Sbjct: 365 YYRLNVFAIFLPPLRKRKEDIPEIAQHILKNLSKRYNKN-YTISPEAVTALMNCNYPGNI 423 Query: 599 RELENVIERAVLLTRGNVLQLSLPD---------------------IVLPEPETPPAATV 637 RELEN +ER+ G ++ + P+ P Sbjct: 424 RELENCLERSAFTAGGGEIKTKHISCMRGEMCMSHFMEEQLSGSSTAITPQTGGIPDNDY 483 Query: 638 VALEGE------DEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 + E DE + +V+ L++ V A AA+ L + + R+K+ I Sbjct: 484 SEADNELISGNMDERERVVQALEKAGWVQA---KAARMLDMTVRQMNYRIKKFNIK 536 >UniRef50_C6VTN7 Sigma 54 interacting domain protein n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VTN7_DYAFD Length = 479 Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats. Identities = 181/402 (45%), Positives = 256/402 (63%), Gaps = 8/402 (1%) Query: 298 QTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDN-------ALAY 350 + + L G L+ E + + L Q++ V++A+ N + Sbjct: 75 HEVLAIALHDESGTWGHLRFYSDREAISPAIPMALPDQVSSVVSLAIANIVSTEKLSRQL 134 Query: 351 QEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGE 410 +EI + +L ++N L E+ + +IIG S M V + + V+ ++STVL+LGE Sbjct: 135 EEIKHYQSQLEEQNAYLLEE-AKEGFSYDDIIGSSGPMQRVFQLLSQVSFTNSTVLLLGE 193 Query: 411 TGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFE 470 TGTGKEL+ARAIHN S R +R MV++NCAA+PA L+ES+LFGHE+G+FTGA +RIG+FE Sbjct: 194 TGTGKELVARAIHNSSARKDRLMVRVNCAAIPAHLIESELFGHEKGSFTGAFERRIGKFE 253 Query: 471 LADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVA 530 LA++++LFLDE+G+MPL++Q KLLR +QE+E ER+G +I+ DVR+IAATNR+L + V Sbjct: 254 LANQATLFLDEIGEMPLDMQAKLLRAIQEREIERIGGKGVIKVDVRIIAATNRNLLEEVQ 313 Query: 531 DREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLS 590 FRSDL+YRL+VFPI LPPLRER DI LLAK F + A+ G++I I + ++ L Sbjct: 314 QGRFRSDLFYRLHVFPITLPPLRERTGDISLLAKQFVGRFAKNNGKSISRISSNVMKALL 373 Query: 591 NMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGEDEYQLIV 650 WPGNVRELE+ +ER VLL R +V++ L P A E+E + I+ Sbjct: 374 AYPWPGNVRELEHQMERCVLLARDHVIRDVLLPSPTQSGHAPAAGIYTKTHEENEREYII 433 Query: 651 RVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSALI 692 RVL + NG + GP GAAQ L LK TL S++K+LGI K +I Sbjct: 434 RVLNQCNGKIYGPGGAAQLLNLKVGTLNSKIKKLGISKEQII 475 >UniRef50_A4SC79 DNA-binding protein Fis / transcriptional regulator, Fis family n=11 Tax=Bacteria RepID=A4SC79_PROVI Length = 704 Score = 545 bits (1406), Expect = e-153, Method: Composition-based stats. Identities = 217/584 (37%), Positives = 324/584 (55%), Gaps = 31/584 (5%) Query: 124 PLAAEGHIFGGCEFIRYDDRPWSEKEFNRLQTFTQIVSVVTEQIQSRVVNNVDYELLCRE 183 PL + G + G F+ D++ WSE E + L + T +S+ Y+ L + Sbjct: 129 PLLSGGEVIGFLNFVSRDEKAWSEAERDLLASVTSPISMAVSNAL-------AYDELRQR 181 Query: 184 RDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISI-VLRSHRKNKLNIYSTHY 242 + +A+ NA+++ D +++ V ++I + + I V +L H Sbjct: 182 EAETAMQLAVNNALMTIRDRGQMLLAVCEQISKLLPVVYLGIRVFGDDGTPRLADNFMHD 241 Query: 243 LDKQHPAHEQSEVDEAGTLTERVFKSKEML----LINLHERDDLAPYERMLFDTWGN-QI 297 + + + E + + +S+E++ + + LA R++ + I Sbjct: 242 EEGRFISVSTEERLSHTGDEDAMRESRELIAHPGVYSGDRFLQLARESRLVAEVQERYGI 301 Query: 298 QTLCLLPLMSG-DTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRL 356 T+ L + G++ + F L L I ++++A+ N LA+ EI L Sbjct: 302 CTIISAQLWDAPGSHAGLII--SSSRRPFEEAELATLNLIIPQLSLALQNLLAFDEIDTL 359 Query: 357 KERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKE 416 ++RL E L E++ V F EIIG S + +VL++V VA +D+TVLI GETGTGKE Sbjct: 360 RQRLEGERTYLKEEIRAVH-NFEEIIGTSAPLAAVLRRVSQVAPTDATVLIQGETGTGKE 418 Query: 417 LIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSS 476 L ARAIH LS RN R +V++NCAA+PA L+ES+LFGHE+G+FTGA+ +RIG+FELAD + Sbjct: 419 LFARAIHTLSPRNERVLVRVNCAALPATLIESELFGHEKGSFTGATGRRIGKFELADGGT 478 Query: 477 LFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRS 536 +FLDE+G++PLELQ K+LRVLQE+E ERLG K+I +VR+IAA+NRDL+K VA FR+ Sbjct: 479 IFLDEIGELPLELQSKMLRVLQEREIERLGGGKLIPVNVRVIAASNRDLQKEVAAGRFRA 538 Query: 537 DLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPG 596 DL++RLN FPI LPPLR R DI +LA F K AR GR I ++ L +W G Sbjct: 539 DLFFRLNAFPIFLPPLRARTGDISMLALHFAQKFAREFGRPNRPIRERDMQELKERQWKG 598 Query: 597 NVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEG------------ED 644 N+REL + IE+AV+LT G VL S I+ P A + +G E Sbjct: 599 NIRELAHAIEQAVILTDGPVLDFS--TILTPRSRHLAALSPSPAKGIQSMAIFEEEVREM 656 Query: 645 EYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDK 688 E LI+ L + G V+G GAA+ L + TL +R+++LG+ K Sbjct: 657 ERTLILDALDQAKGRVSGKGGAAELLSIHPKTLYTRIEKLGLRK 700 Score = 91.0 bits (225), Expect = 2e-16, Method: Composition-based stats. Identities = 45/213 (21%), Positives = 91/213 (42%), Gaps = 9/213 (4%) Query: 185 DNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLD 244 ++ R+ I++AV S D EL + ++ F D IV + ++++ +L Sbjct: 8 ESRRLTQYISDAVGSVRDPQELFHTLTDKLRLMFKFDSAVIVTIDKDRRYVSVFFEMFLF 67 Query: 245 KQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHER-----DDLAPYERMLFDTWGNQIQT 299 + AG+ E + +++ + +D P ++ +D QI Sbjct: 68 PIAQGFANEKRLLAGSWFEPFLTKPAVATVSIGDELRRHGNDSYPILKIFYDAGMRQI-- 125 Query: 300 LCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKER 359 L PL+SG ++G L +EK ++ +LL + +++AV NALAY E+ + + Sbjct: 126 -VLSPLLSGGEVIGFLNFVSRDEKAWSEAERDLLASVTSPISMAVSNALAYDELRQREAE 184 Query: 360 LVDENLALTEQLNNVDSEFGEIIGRSEAMYSVL 392 + LA+ L + ++ E + +L Sbjct: 185 TAMQ-LAVNNALMTIRDRGQMLLAVCEQISKLL 216 >UniRef50_C7PEX2 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PEX2_CHIPD Length = 653 Score = 544 bits (1402), Expect = e-153, Method: Composition-based stats. Identities = 194/540 (35%), Positives = 300/540 (55%), Gaps = 24/540 (4%) Query: 166 QIQSRVVNNVDYELLCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISI 225 I N L RE+ + L I + + ++ + ++ + + + D + I Sbjct: 117 DIARYKHQNNLQMALQREQLMQKQLQQI---IEAPFELADKIARIPDVLQTFVPFDYLHI 173 Query: 226 VLRSHRKNKLNIYSTHYLDKQHPAH-------EQSEVDEAGTLTERVFK-----SKEMLL 273 + R + L S H + ++ LT R+ + + Sbjct: 174 AITGKRPHTLEDLSFQRTGFDEYEHLDNTALCKSLGLERNTILTGRIAQLENETGGYLSD 233 Query: 274 INLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLL 333 + +E L D + + L +G+ L V+ +T LL Sbjct: 234 AEFRQWIADKIWESKLSDHLRLNARLAIAVTLPAGN--LAVISFYSRNADTYTEELFTLL 291 Query: 334 RQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLK 393 ++ + ++ Q+ L R+V + + L + + F I+GRS SVL Sbjct: 292 GRMENGIRQLLEQIQ--QKNDALSARIVARKR-VEKPLIDNEVLFEGIVGRSPVFLSVLH 348 Query: 394 QVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGH 453 + MV+ + S+VLILGE+GTGKELIAR IH S R N+ ++ +NCAA+PA L+ES+LFGH Sbjct: 349 SINMVSAAPSSVLILGESGTGKELIARCIHRQSPRKNKPLITVNCAALPAELIESELFGH 408 Query: 454 ERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQT 513 E+GAFTGA+ +R G+FE+AD ++FLDE+G++P+E Q KLLRVLQE+EFER+G +K+I+ Sbjct: 409 EKGAFTGATDKRAGKFEMADGGTIFLDEIGELPIESQVKLLRVLQEKEFERVGGSKVIKV 468 Query: 514 DVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARR 573 DVR+IAATNR+L+K VA+ FR DLYYRLNVFP+ LP LRER EDIPLLA+ F K++ + Sbjct: 469 DVRVIAATNRNLEKEVAEGRFRLDLYYRLNVFPVELPSLRERKEDIPLLAQHFVDKLSEK 528 Query: 574 LGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPE--- 630 L RNI I + L+ L + +WPGN+RE+E+V+ER++L+T G +L+ + + +P Sbjct: 529 LSRNITDISPDALKALRSYDWPGNIREMEHVMERSLLMTTGTILKQIMLPKMAAQPVGTT 588 Query: 631 -TPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKS 689 + + E E + I++VLK G V G GAA+ LGL +TL S++++LGI + Sbjct: 589 ISSADGNRIKTLEEMEIEHILQVLKSCKGKVCGVGGAAELLGLPPSTLNSKIRKLGIKRD 648 >UniRef50_Q1D5E1 Sigma-54 dependent transcriptional regulator, Fis family n=4 Tax=Myxococcales RepID=Q1D5E1_MYXXD Length = 529 Score = 544 bits (1401), Expect = e-153, Method: Composition-based stats. Identities = 181/518 (34%), Positives = 271/518 (52%), Gaps = 40/518 (7%) Query: 188 RILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQH 247 ++L+ V +D+D + + I D ++ L + +L + H Sbjct: 29 QVLLPFGGLVGREVDLDAFLQTLMDRIAITLQADRGTLWLLDPARRELFSRAAHL----- 83 Query: 248 PAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMS 307 P Q V + V K+ + + + + + G + +L +PL Sbjct: 84 PEVSQIRVKLGQGVAGTVAKAGHAINVPDPRGEQRFFAD--IDRMTGYRTTSLLAVPLRD 141 Query: 308 GDTML-GVLK-LAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENL 365 GD L GVL+ L + E FT + L IA +V+ A+ + YQE+ R KE+ Sbjct: 142 GDGALYGVLQVLNRRGEDRFTDEDTQRLTAIASQVSTALQSTSLYQELQRAKEQ------ 195 Query: 366 ALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNL 425 V F IIG S + ++ + V A +D+TVL+ GE+G+GKEL ARA+H Sbjct: 196 ----PQVPVGYFFNRIIGESPQLQAIYRLVRKAAPTDATVLLRGESGSGKELFARAVHVN 251 Query: 426 SGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDM 485 R ++ +K++CAA+PA L+E++LFGHERGAFTGA + G+FE A ++F+DE+G++ Sbjct: 252 GPRRDQPFIKVDCAALPATLIENELFGHERGAFTGADHRVPGKFEAASGGTVFIDEIGEL 311 Query: 486 PLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVF 545 PL +Q KLLRV+Q++EFER+G + ++ DVR++AAT+RDL +MVA+ FR DLYYR+ V Sbjct: 312 PLPVQGKLLRVIQDREFERVGGTQAVKVDVRIVAATHRDLARMVAEGRFREDLYYRIKVV 371 Query: 546 PIHLPPLRERP-EDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENV 604 + LPPLRER EDI LA+ F +ARR + A + L WPGNVRELEN Sbjct: 372 EVVLPPLRERGAEDIERLARHFVAAVARRHRLTPPRLSAAAVERLKRYRWPGNVRELENC 431 Query: 605 IERAVLLTRGNVLQLSLP----------------DIVLPEPETPPAATVVALEGEDEYQL 648 IE AV+L G +L+ LP + P P A ++ L E E + Sbjct: 432 IESAVVLCEGEILEEHLPLPDVDRAALPPPAAAQGVNAPTAPAPLDAGLLPL-AEVERRH 490 Query: 649 IVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 I+RVL G AA+ L + R TL ++K G+ Sbjct: 491 ILRVLDAVKG---NRTAAARVLAIGRNTLARKLKEYGL 525 >UniRef50_Q1PYB5 Similar to sigma 54 response regulatory protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYB5_9BACT Length = 645 Score = 544 bits (1401), Expect = e-153, Method: Composition-based stats. Identities = 183/391 (46%), Positives = 259/391 (66%), Gaps = 12/391 (3%) Query: 304 PLMSGDTMLGVLKL-----AQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKE 358 PL++ +G++ + + + + + + L Q E + + AL EI LK+ Sbjct: 256 PLITHKGAIGIVVVMVDITERRKMEDSRQKDHDKLEQQVEERTLELRTAL--SEIKTLKD 313 Query: 359 RLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELI 418 RL EN+ L + N F +I+G+S+++ VL + E VA +++TVLILGETGTGKELI Sbjct: 314 RLEAENIYLRHE-NKRRHHFAQILGQSDSLKYVLYRAEQVAPTNATVLILGETGTGKELI 372 Query: 419 ARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLF 478 A AIH++S R R M+ +NCAA+P L+ES+LFG E+GAFTGA +RIGRFE+A+ S+L Sbjct: 373 AFAIHDMSPRKERPMITVNCAALPGNLIESELFGREKGAFTGADTRRIGRFEVANGSTLC 432 Query: 479 LDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDL 538 LDE+G++PLELQ KLLRV+Q EFERLGS I+ DVR++A TNR+L++ + + FR DL Sbjct: 433 LDEIGELPLELQAKLLRVIQHNEFERLGSPHTIKVDVRIVATTNRNLEEEIRNGRFRQDL 492 Query: 539 YYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNV 598 YYRLNVFPI +PPLR+R EDIPL+ AF + +R+LG+ I SI E ++ L + WPGNV Sbjct: 493 YYRLNVFPITVPPLRQRKEDIPLMVHAFVERYSRKLGKQITSIQKEAMKALQDYPWPGNV 552 Query: 599 RELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNG 658 RELE++IERAV+L G VLQL+ E +P ++ V E E I+++L ET Sbjct: 553 RELESIIERAVILCPGPVLQLAD----KLEISSPAFSSTVRTLEETERDQILKILSETRW 608 Query: 659 VVAGPKGAAQRLGLKRTTLLSRMKRLGIDKS 689 + G GAA LG+ +TL +RM +LGI + Sbjct: 609 RIEGKNGAAAILGIHPSTLRARMHKLGIVRP 639 >UniRef50_B6YRB5 Nif-specific regulatory protein n=1 Tax=Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 RepID=B6YRB5_AZOPC Length = 521 Score = 543 bits (1400), Expect = e-153, Method: Composition-based stats. Identities = 166/514 (32%), Positives = 266/514 (51%), Gaps = 14/514 (2%) Query: 178 ELLCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNI 237 C + L + + + D + + + K + + I L L Sbjct: 8 RGKCCAEADLTFLSNMGDLLNEMEDPKDALEGILKNLCGFLKAFVGMITLHDRLSGMLMT 67 Query: 238 YSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQI 297 ++ L + + E + RV +++ +I+ +D + + T + Sbjct: 68 SVSYGLTAEEKMKAIYQTGEG--IIGRVAATRKPAIISDISKDSVFLNRTGIVST--ERP 123 Query: 298 QTLCLLPLMSGDTMLGVLKLAQC-EEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRL 356 +P+++ + ++G L + + + + + +L I + + + Sbjct: 124 MAFLCVPVINKNELVGTLSIHKVNDRGMDFSYEEKILTIIGSLIGKHISVRRRH---IEE 180 Query: 357 KERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKE 416 E L EN L Q ++G S M + V+ VA ++STV+I GE+G GKE Sbjct: 181 LEELRRENQLLQSQSIEKPFRPDNMVGNSALMRELYGLVKRVAPTNSTVIIRGESGVGKE 240 Query: 417 LIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSS 476 LIA AIH S R + V++NC+A+P L+ES+LFG+E+GAFTGA Q GRFELAD + Sbjct: 241 LIAEAIHKASSRIKKPFVRVNCSALPENLIESELFGYEKGAFTGAERQHSGRFELADGGT 300 Query: 477 LFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRS 536 +FLDE+ D+P +Q KLLR+LQ+++FER+G IQTDVR++ ATNR+L++M+ + FR Sbjct: 301 IFLDEIADIPFSVQVKLLRILQQRQFERIGGTHTIQTDVRIVTATNRNLEEMLQNNTFRE 360 Query: 537 DLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPG 596 DLYYR++VFPI++P LRER DI +L F KI ++ N+ I + L L WPG Sbjct: 361 DLYYRIHVFPIYVPALRERRADITILTDHFIQKINKQNQTNVKRITSGALDMLMMYSWPG 420 Query: 597 NVRELENVIERAVLLTRGNVLQ-LSLPDIVLP--EPETPPAATVVALEGEDEYQLIVRVL 653 NVRELENVIERA++LT +V+ +LP + +T + + G+ E Q+I+ L Sbjct: 421 NVRELENVIERAMILTTDDVIHSYNLPPSLQTGVSSDTVKVGRLDLVLGKVERQMIMDTL 480 Query: 654 KETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 G VA +A +LG+ + R+KR I+ Sbjct: 481 IANRGNVA---KSAFQLGISERVMGLRIKRYNIN 511 >UniRef50_A1AL12 Transcriptional regulator, Fis family n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A1AL12_PELPD Length = 687 Score = 543 bits (1399), Expect = e-152, Method: Composition-based stats. Identities = 193/525 (36%), Positives = 278/525 (52%), Gaps = 19/525 (3%) Query: 173 NNVDYELLCRERDNFRILVAITNAVLSRL---DMDELVSEVAKEIHYYFDIDDISIVLRS 229 + + L R+ L ++ D+D + + +F D ++ Sbjct: 158 RKQNEQTLLRQLSFESFLAETSSVFAKSTLPSDLDHQIEHALWRLLDHFHGDRCGLIKVD 217 Query: 230 HRKNKLNIYSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERML 289 K I Y + ++ + R + + + +R Sbjct: 218 LEGEKTIITHAVYREGLERLPGDVDLVALFPWSFRQLREGRCYCFSDLAELPV-EADRDR 276 Query: 290 FDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTN-LNLLRQIAERVAIAVDNAL 348 I++ +PL + + ++ + + T + LN L+ I + A+ Sbjct: 277 ASWMAMGIRSGLHVPLRVENRVHYLIVVESHSGILAGTEDVLNRLQIIGDLFVNALHRKA 336 Query: 349 AYQEIH-------RLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQS 401 E+ RLK++L E L ++ +I+G+SE + VL VE VA + Sbjct: 337 TEDELRSSCDEIARLKDKLELEADYLRSEVRASRFN-DQIVGQSEPIQGVLAMVEQVAPT 395 Query: 402 DSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGA 461 STVL+ GETGTGKEL+A+AIHN S R ++ MVK+NCA++P+ L+ES+LFG ERGA+TGA Sbjct: 396 PSTVLVYGETGTGKELVAQAIHNHSPRRDKLMVKVNCASLPSSLVESELFGRERGAYTGA 455 Query: 462 SAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAAT 521 +++GRFELAD SSLFLDE+ ++ LELQ KLLRVLQE EFERLGS + I+ DVR+IAAT Sbjct: 456 LTRQMGRFELADGSSLFLDEIAELSLELQSKLLRVLQEGEFERLGSPRTIKVDVRVIAAT 515 Query: 522 NRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSI 581 NR+L + V FR DLYYRL+VFPI +PPLRER EDIPLLA F ++G+ I I Sbjct: 516 NRNLLEEVRKGRFREDLYYRLSVFPIVVPPLRERREDIPLLAWEFVRDFNEKMGKRILRI 575 Query: 582 PAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALE 641 + L + WPGNVREL NVIE AV+++ G+ L++ LP+ ++ P + Sbjct: 576 AKRDMLALQSYSWPGNVRELRNVIEYAVIVSPGDELKIRLPENIVNAP------PQMTTL 629 Query: 642 GEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 E E I VL+ T + G GAA L L TL SRMK+LGI Sbjct: 630 EEMERHYIQDVLRRTEWRIKGEGGAAHILDLNPATLYSRMKKLGI 674 >UniRef50_P30667 Nif-specific regulatory protein n=6 Tax=Bacteria RepID=NIFA_AZOBR Length = 625 Score = 542 bits (1398), Expect = e-152, Method: Composition-based stats. Identities = 167/447 (37%), Positives = 247/447 (55%), Gaps = 12/447 (2%) Query: 179 LLCRERDNFRIL--VAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLN 236 + + N +L ++ + S LD+ + + EV + + Y + + L N L Sbjct: 4 AMRQSTSNLELLTIYEVSKILGSSLDLQQTLREVLRALAYQLQMHRGRVYLVGED-NVLR 62 Query: 237 IYSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQ 296 + + + L + A Q E + +T R+ K+ ++ + L + Q Sbjct: 63 LVAANGLSNE--AAAQIEFRDGEGITGRILKTGMPAVVPNLAEEPLFLNRTGGREDLDEQ 120 Query: 297 IQTLCLLPLMSGDTMLGVLKLAQCE---EKVFTTTNLNLLRQIAERVAIAVDNALAYQEI 353 + +L +P+ + ++GVL + + + +++ L +A + V E Sbjct: 121 VASLVGVPIKAAGVVVGVLTIDRISDEGPQGHFGSDVRFLTMVANLIGQTVRLHRTVAEE 180 Query: 354 HRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGT 413 R R E + ++L V + +++ S M V+ QV VA STVLI GE+GT Sbjct: 181 RRFMMR---ETFRMQKELRPVAAPINDVVCTSPNMLEVMAQVHRVAPFKSTVLIRGESGT 237 Query: 414 GKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELAD 473 GKELIARAIHN+S R + +++NCAA+P LLES+LFGHE+GAFTGA GRFELA Sbjct: 238 GKELIARAIHNMSPRKDAPFIRVNCAALPESLLESELFGHEKGAFTGAQKDHKGRFELAS 297 Query: 474 KSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADRE 533 +LFLDE+GD+ Q KLLRVLQEQEFER+G +K I+TDVRLI ATN +L++ V + Sbjct: 298 GGTLFLDEIGDISPNFQAKLLRVLQEQEFERVGGSKTIKTDVRLICATNLNLEEAVGHGK 357 Query: 534 FRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNME 593 FR+DLY+R+NV IHLPPLRER +DI LA+ F K A+ G + + E L L+ Sbjct: 358 FRADLYFRINVVTIHLPPLRERRQDIGPLARHFVAKFAKDNGMALV-MEDEALEVLNRCT 416 Query: 594 WPGNVRELENVIERAVLLTRGNVLQLS 620 WPGNVRELEN IERA +R +++ Sbjct: 417 WPGNVRELENCIERAATQSRDGIIRTE 443 >UniRef50_UPI00016C5695 DNA-binding protein Fis / transcriptional regulator, Fis family n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C5695 Length = 635 Score = 542 bits (1396), Expect = e-152, Method: Composition-based stats. Identities = 178/338 (52%), Positives = 232/338 (68%), Gaps = 1/338 (0%) Query: 353 IHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETG 412 + R + RL +N+ L E+L F EI+G+S A+ SVL++V VA +DSTVLI GETG Sbjct: 299 MEREQARLQQQNVYLQEELKAAH-NFDEIVGQSPALVSVLQRVSKVAGTDSTVLITGETG 357 Query: 413 TGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELA 472 TGKEL+ARA+H+ S R + ++K+NCAA+P L+ES+LFGHE+GAFTGA A++ GRFELA Sbjct: 358 TGKELVARAVHSASPRKAKPLIKLNCAALPTHLVESELFGHEKGAFTGAVARKPGRFELA 417 Query: 473 DKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADR 532 D +LFLDEVG++ LE Q KLLRVLQE+EFER+G ++ DVR+IAATNRDL ++V + Sbjct: 418 DGGTLFLDEVGELSLEAQAKLLRVLQEREFERVGGTAPVKVDVRVIAATNRDLAQLVKEG 477 Query: 533 EFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNM 592 FR+DL YRLNVFP+ LP LRERP DIPLL + F K A RLG+ I+ + +TL L Sbjct: 478 AFRADLLYRLNVFPVRLPALRERPGDIPLLVRFFVTKFAGRLGKRIERVSGDTLDALVGY 537 Query: 593 EWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGEDEYQLIVRV 652 +WPGN+RELENVIERA +L+ G L + + + PA E I V Sbjct: 538 DWPGNIRELENVIERAAILSDGPELVIDPDVLPVTRGGAAPAGAGGQSLVAVEADHIRSV 597 Query: 653 LKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSA 690 L +T V+ GP GAA LGL TL SRMK+LGI + + Sbjct: 598 LAQTGWVIEGPNGAATVLGLHPNTLRSRMKKLGILRPS 635 >UniRef50_C0GSE0 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GSE0_9DELT Length = 730 Score = 541 bits (1395), Expect = e-152, Method: Composition-based stats. Identities = 187/572 (32%), Positives = 284/572 (49%), Gaps = 47/572 (8%) Query: 124 PLAAEGHIFGGCEFIRYDDRPWSEKEFNRLQTFTQIVSVVTEQIQSRVVN-NVDYELLCR 182 PLAA G E + D ++ + +Q + +T +IQ E L Sbjct: 191 PLAALVKAAGEVEPGKKMDVQFNVQGQKEIQALSDAFRRMTSRIQEYTTRLEEQAEALEH 250 Query: 183 ERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYS--- 239 + + V + DMDE+ + + I I++ ++ L + + Sbjct: 251 AHRRMQTTCEVARNVSALSDMDEIGGYLMRRIKKIIHCPSNLILVFGPDRDVLFVITEKG 310 Query: 240 ----THYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGN 295 + Q + T+ RVF+S L E + Sbjct: 311 TYPVSDRQTAQSIDAALQNLQGVETIDGRVFES-------------LPLPEGFVLGEKQ- 356 Query: 296 QIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQE-IH 354 ++PL D + G + + + + ++ L+ + + + A+ +QE I Sbjct: 357 -----VVVPLYYEDILCGAMLASCSSKCKCDSDSMELISLVLSHASGTIRRAILHQEEIK 411 Query: 355 RLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTG 414 +LK+ + + + F +IGR M ++ + ++ VA +D TVLI GE+GTG Sbjct: 412 KLKQGVSE------------SAGFEGMIGRDYRMQTIYRLIQDVAPTDVTVLIQGESGTG 459 Query: 415 KELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADK 474 KEL+A+AIH S R + V +NC+A PA LLES+LFGHE+GAFTGA QR GRFE A Sbjct: 460 KELVAKAIHARSSRRDNPFVVINCSAYPATLLESELFGHEKGAFTGAIRQRPGRFEQARG 519 Query: 475 SSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREF 534 ++FLDE+ ++ L Q KLLRVLQ Q+FERLG K I+ DVR++AATN+DL + V F Sbjct: 520 GTVFLDEIAEVDLSAQVKLLRVLQTQKFERLGGEKSIEVDVRILAATNKDLLEEVKAGRF 579 Query: 535 RSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEW 594 R DLYYRL+V PI+LPPLRER D LLA+ F + A + I+ I + +R L + W Sbjct: 580 REDLYYRLDVVPINLPPLRERGNDTALLARHFLERFAAVQDKRINEISSSAMRALLDYSW 639 Query: 595 PGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLK 654 PGNVRELENV+E+AV+L +G + L L T+ + E L++ L+ Sbjct: 640 PGNVRELENVMEQAVVLCKGETIALEDLPDKLQGARPARRKTI----EDQEKNLLLETLE 695 Query: 655 ETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 K AA+RLG+ R+TL +++K+ GI Sbjct: 696 ACGW---NKKMAAERLGIGRSTLYAKLKKHGI 724 >UniRef50_Q2IQU1 Transcriptional regulator, NifA subfamily, Fis family n=4 Tax=Anaeromyxobacter RepID=Q2IQU1_ANADE Length = 562 Score = 541 bits (1395), Expect = e-152, Method: Composition-based stats. Identities = 195/505 (38%), Positives = 277/505 (54%), Gaps = 7/505 (1%) Query: 186 NFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDK 245 + RI+ VLS +D+ ++ + + +F ++I S + Sbjct: 52 HRRIVEEAIELVLSTVDLQAVLERTGRLLRRHFGETRVAINRLSAEDPTRAEVVLVSDPR 111 Query: 246 QHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPL 305 Q + AG+ + +++ + E L +G +L PL Sbjct: 112 QPSPEVGTSFPLAGSAAGEALAKRLPCVVDPLRPREPRWREEPLLAAYGYG--SLVSFPL 169 Query: 306 MSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENL 365 + + +LG L +A + + RQ+A VAIA+ N+L +E+ RL L EN Sbjct: 170 VFENELLGTLDIAHPPAEGLLDCCFEVARQVAHLVAIALHNSLMVEEVQRLNRLLGRENA 229 Query: 366 ALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNL 425 L E++ + + + SE M +V+++V +VA S +TVL+ GETGTGKE +AR +H Sbjct: 230 LLKEEIRQIKRD-SRYVAESEGMRAVVERVRLVAPSTTTVLVRGETGTGKEGLARMVHEF 288 Query: 426 SGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDM 485 S R N V N A+P GL+ES+LFGHE+GAFTGA+ +R GRFE AD +LFLDEVGD Sbjct: 289 SPRFNAPFVAANLGAIPEGLIESELFGHEKGAFTGATRRRAGRFEQADGGTLFLDEVGDA 348 Query: 486 PLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVF 545 P +Q +LLRVLQE+ ER+G + ++ DVR+IAATNR+L++MVA FR+DLYYRL VF Sbjct: 349 PPSVQVRLLRVLQERVVERVGGTEPVKVDVRVIAATNRNLEEMVARGTFRADLYYRLAVF 408 Query: 546 PIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVI 605 PI LPPLRER ED+ L F K A + R + + R L WPGNVRELEN + Sbjct: 409 PIELPPLRERREDVRPLGTYFLAKQAALMHRRPPRVGEDVWRALEAYGWPGNVRELENFL 468 Query: 606 ERAVLLTRGNVLQL-SLPDIVLPEPETPPAATVVALEG--EDE-YQLIVRVLKETNGVVA 661 +RA++L+ G L L +LP AA A G +DE +LI R L+ G V Sbjct: 469 QRALILSPGQDLSLPALPTSSALASPAAAAAAEPAPPGRFDDEVRELIERALEHAGGRVY 528 Query: 662 GPKGAAQRLGLKRTTLLSRMKRLGI 686 GP GAA LGL+ TTL +MK+ G+ Sbjct: 529 GPGGAAALLGLRPTTLQGKMKKYGV 553 >UniRef50_C5S9Z4 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5S9Z4_CHRVI Length = 552 Score = 541 bits (1394), Expect = e-152, Method: Composition-based stats. Identities = 197/535 (36%), Positives = 297/535 (55%), Gaps = 20/535 (3%) Query: 167 IQSRVVNNVDYELLCRERDNFRILVAITNAVLSRLDMDELVSEV---AKEIHYYFDIDDI 223 + R +N L R+L ++ A+ + L + +++E+ + + D Sbjct: 27 VDRRRPSNATEVSLAERLAFERLLGDLS-ALFANLPPERVIAEIEAALARLVDFLGFDRS 85 Query: 224 SIVLRSHRKNKLNIYSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLA 283 S + + + + + + V +S ++L++ D Sbjct: 86 SFGEFRDEDSPIEVLCS--VARNGIETTPLGVGLPLPWYFGALRSGQLLVLPDLPADLPP 143 Query: 284 PYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNL-LRQIAERVAI 342 E + + +++ +PL G ++GV+ + +L + L+ + E A Sbjct: 144 EAEIEAEFSRQSGLRSNLSIPLRVGGRVMGVIAFSAFHRTRAWPEDLIVRLKIVGEVFAQ 203 Query: 343 AVDN-------ALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQV 395 A+ A A EI RLKERL EN L + + + RS VL ++ Sbjct: 204 ALARSRRETELAAALAEITRLKERLEAENSYLRQ--SGCARPAQMLASRSPRFNQVLDEI 261 Query: 396 EMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHER 455 A +++TVL+LGETGTGKE++A +H LS R R ++K+NCAA+PA L+E++LFG E+ Sbjct: 262 AQAAPTNATVLLLGETGTGKEVLADTLHALSQRRERPLIKVNCAALPASLIETELFGREK 321 Query: 456 GAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDV 515 GA+TGA A++ GRFELAD SLFLDEVG++PLELQ KLLRVLQ+ FER+G + I+ DV Sbjct: 322 GAYTGALARQPGRFELADGGSLFLDEVGELPLELQAKLLRVLQDGVFERVGGTRTIRVDV 381 Query: 516 RLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLG 575 RLIAATNR+L + V FR DL+YRLNVFP+ LPPLRER EDIP LA F + +G Sbjct: 382 RLIAATNRNLARAVQAGGFREDLFYRLNVFPVTLPPLRERREDIPWLAWEFIKHFSDSMG 441 Query: 576 RNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAA 635 + I+ + ++++ L + WPGNVREL N+IERA++L RG L ++L P T Sbjct: 442 KPIEHVAEDSMQALLDYHWPGNVRELRNLIERAMILARGPTLHVAL----ECAPATTTRP 497 Query: 636 TVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSA 690 T ++E I+++L++T+ + G GAA+RLGLK TTL SRMKRLG+ +S Sbjct: 498 TATDTLADNERAHILQILEQTHWRIRGAGGAAERLGLKPTTLESRMKRLGLSRSG 552 >UniRef50_C6VVC1 Sigma54 specific transcriptional regulator, Fis family n=3 Tax=Sphingobacteriales RepID=C6VVC1_DYAFD Length = 650 Score = 541 bits (1394), Expect = e-152, Method: Composition-based stats. Identities = 167/398 (41%), Positives = 239/398 (60%), Gaps = 8/398 (2%) Query: 297 IQTLCLLPL----MSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQE 352 +++ ++P+ + G F +L L ++ + A+ + Sbjct: 253 MRSNLVMPIANISIDGKQFF--FCFYSRRPDAFGEQDLELCARLQPAIESAIRKMIRAAS 310 Query: 353 IHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETG 412 L D + + + F ++G+S M ++L + VA SD++VLI GE+G Sbjct: 311 TSGPDMEL-DHAIEVMAGSRSESPVFDSMVGQSHLMLNILDLISQVAPSDTSVLITGESG 369 Query: 413 TGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELA 472 TGKE +A IH LS R ++ VK+NCAA+P L+ES+LFGHE+GAFTGA+ +RIGRFE A Sbjct: 370 TGKEHVADTIHQLSPRKSKPFVKVNCAALPINLIESELFGHEKGAFTGATERRIGRFEQA 429 Query: 473 DKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADR 532 D ++FLDE+GDMPLE+Q KLLRVLQ++E ER+G + I+ ++R+I ATNR+L++ +A+ Sbjct: 430 DGGTIFLDEIGDMPLEVQVKLLRVLQQREIERVGGTQPIKINIRVITATNRNLERAIAEG 489 Query: 533 EFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNM 592 +FR D+YYRLNVFPI +P LRER EDI L F R+ G+NI I L L + Sbjct: 490 KFRLDIYYRLNVFPIAMPALRERTEDIAPLVHHFIGYFGRKTGKNISGISDRALAMLMDY 549 Query: 593 EWPGNVRELENVIERAVLLTRGNVLQ-LSLPDIVLPEPETPPAATVVALEGEDEYQLIVR 651 WPGN+RELENVIER+VLL +GN + + LP E V+ E+E I+ Sbjct: 550 GWPGNIRELENVIERSVLLAKGNSIDTVYLPAHPAVEGIAKAGPPVLKNIFENERDHIIS 609 Query: 652 VLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKS 689 VLK G ++G GAA+ L + TTL S+MK+LGI KS Sbjct: 610 VLKACEGRISGENGAAKILAIPPTTLSSKMKKLGIKKS 647 >UniRef50_Q39TT6 Transcriptional regulator, Fis family / DNA-binding protein Fis n=1 Tax=Geobacter metallireducens GS-15 RepID=Q39TT6_GEOMG Length = 473 Score = 540 bits (1391), Expect = e-152, Method: Composition-based stats. Identities = 183/365 (50%), Positives = 251/365 (68%), Gaps = 5/365 (1%) Query: 327 TTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSE 386 + + ++ + + A E+ LK RL EN+ L ++ + + F EI+ + Sbjct: 112 EYSCSFIKDMTQHFQTQEALRRALDEVQTLKNRLEAENVYLMNEI-KLSNNFDEIVTGNP 170 Query: 387 AMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLL 446 L+ VE VA +D++VLILGETG GKELIARAIHNLS R +R ++++NCAA+PA L+ Sbjct: 171 IFMKALQLVEQVAPTDASVLILGETGVGKELIARAIHNLSNRRDRPLIRLNCAALPATLM 230 Query: 447 ESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLG 506 E++LFGHERGAFTGA+ ++ GRF+LAD +LFLDEVGD+P+ELQ KLLRVLQE EFERLG Sbjct: 231 ENELFGHERGAFTGANCRKPGRFDLADGGTLFLDEVGDLPMELQSKLLRVLQEGEFERLG 290 Query: 507 SNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAF 566 + I+ DVR++AAT+ DLK ++A+ FRSDLYYRLNVFPI PPLRER EDIPLL + F Sbjct: 291 GAETIKVDVRILAATHVDLKALLAEGRFRSDLYYRLNVFPIQCPPLRERREDIPLLVRHF 350 Query: 567 TFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVL 626 + G++I+ IP + +L WPGN+REL+NVIERAV+++RGN L++ L Sbjct: 351 VKASCEKNGKSIELIPRHVMESLEGYPWPGNIRELQNVIERAVIISRGNKLEID----SL 406 Query: 627 PEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 P+ A ++ E + I+R L+ T V GPKGAA+ LGLKRTTL +RM++LGI Sbjct: 407 PKMVIAADAAPISPLEVTEREHIIRALETTAWRVGGPKGAAEILGLKRTTLQARMRKLGI 466 Query: 687 DKSAL 691 ++ L Sbjct: 467 NRQGL 471 >UniRef50_D0KWC0 Transcriptional regulator, NifA subfamily, Fis Family n=2 Tax=Chromatiales RepID=D0KWC0_HALNC Length = 539 Score = 538 bits (1387), Expect = e-151, Method: Composition-based stats. Identities = 164/531 (30%), Positives = 268/531 (50%), Gaps = 36/531 (6%) Query: 183 ERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHY 242 E I+ + + DE ++ + + + ++ + L+ + L+I ++ Sbjct: 15 EDVELLIIYEASRLMTHNGTADEAINGILRLMSQMIGLNRGRVTLKDDDMDTLSIRYSYG 74 Query: 243 LDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCL 302 L A + E +T RV +++++ ++ + + + + T + Sbjct: 75 LTPPERARGHYVIGEG--VTGRVMQTRQVAVVQNIDDEPVYLTRAVERGTLPQETVAFLA 132 Query: 303 LPLMSGDTMLGVLKLAQCE-EKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLV 361 +P++ +T LGVL + K + ++NLL+ +A +A + + +E L L Sbjct: 133 VPILYNNTPLGVLGAHRLRGRKRPFSRDINLLQVLATLIAQILSLSRLIEEKTAL---LA 189 Query: 362 DENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARA 421 DEN AL + L+ I+G S A+ L+Q V+ + +TVL+ GE+GTGKE AR Sbjct: 190 DENRALKQALDQKTEGTHGILGESPALRHALRQALHVSPTQATVLLTGESGTGKERFARL 249 Query: 422 IHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDE 481 +H S + + +NCAA+P LLES+LFGHE+GAFTGA ++ G ELA+ +LFLDE Sbjct: 250 VHITSQLRDGPFMAINCAAIPEALLESELFGHEKGAFTGAVVKKQGIIELANNGTLFLDE 309 Query: 482 VGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYR 541 +GD+ L+LQ KLL VL+++ +R+G + I +VR+IAAT+++L+K V + +FR DL+YR Sbjct: 310 IGDLALDLQSKLLHVLEKRAIKRVGGTQDIPVNVRIIAATHKNLQKAVNEGQFRIDLFYR 369 Query: 542 LNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVREL 601 LNVFPIHLPPLRER D+ LA+ F + RN L L WPGN+R+L Sbjct: 370 LNVFPIHLPPLRERGGDVSHLARHFLQRANHEFDRN-TVFGPGVLERLDGYNWPGNIRQL 428 Query: 602 ENVIERAVLLTRGNVLQLS--------------------------LPDIVLPEPETPPAA 635 EN+++RAVL+ + + + + LP P Sbjct: 429 ENIVKRAVLIAQNREITIDDVILILQHESHIGEHLEAGSTKSVAPIEPPSLPSKSHQPTQ 488 Query: 636 TVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 DE Q ++ L++T G AA LG+ R++RLG+ Sbjct: 489 RGYGWVRADETQGLLDALRQTGG---NKTRAAMTLGMTPRQFRYRLERLGL 536 >UniRef50_A8ZZQ7 Sigma-54 factor interaction domain-containing protein n=4 Tax=Proteobacteria RepID=A8ZZQ7_DESOH Length = 684 Score = 538 bits (1386), Expect = e-151, Method: Composition-based stats. Identities = 195/688 (28%), Positives = 321/688 (46%), Gaps = 34/688 (4%) Query: 18 TRTLLQQP-----DLASLCEALSQLVKRSALADNAAIVLWQAQTQRASYYASREKDTPIK 72 + TLLQ+ D L E L+++ + + W + + T I Sbjct: 5 SDTLLQRVQQRIFDEGDLQEGLNEVYHCVSAVMPVGKMSWLQFHYDLNMLRVIAQATEIG 64 Query: 73 YEDETVLAHGPVRSILSRPDTLHCSY---EEFCETWPQLDAGGL----YPKFGHYCLMPL 125 E + P I L CS E + P+ D G K + + L Sbjct: 65 GEKTNFTYNLPGELI-----ALLCSRDIPEIYLMNHPEKDPLGKEICNRAKLFDWSSLFL 119 Query: 126 AAEGHI--FGGCEFIRYDDRPWSEKEFNRLQTFTQ-IVSVVTEQIQSRVVNNVDYELLCR 182 + H +G + ++E L + + V+ I + +L Sbjct: 120 NFQNHTGTYGAIMIMTDRKNRYTEAHGRLLSGLKKPLQRVMDALILDNETRSPHPKLKEP 179 Query: 183 ERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHY 242 +D +T + LD+ VS+ + + + D + + R + + Y Sbjct: 180 VKDKNEFFRQVTRRLCGHLDLQAGVSQCLQYLSRFMPADALFVRQREPEFQSERVLAESY 239 Query: 243 LDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCL 302 + ++ I + R + + ++ +G++I Sbjct: 240 GFFHQQTGTLIPLPIPA-------DTRRTPGIRIINRPEDSSALKLYMPIFGSEI-CCIS 291 Query: 303 LPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVD 362 +PL+ + +G + +T ++ L + + +A+ N + ++E+ RLK + + Sbjct: 292 MPLIHKERPIGAAVVGLEGRARYTEEHMQLFALLHDPFVLALSNNIRHREVIRLKNLVEE 351 Query: 363 ENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAI 422 E L E+L+ IIG S + V++ +VA DS VL+ GETG GKE+IA I Sbjct: 352 EKKDLAEELHCTAP--DTIIGGSLGLEKVMENARLVAGQDSPVLLTGETGVGKEMIANFI 409 Query: 423 HNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEV 482 H S R + ++K+NC A+P L++S+LFGHE+GAFTGA+ Q++GRFE A+ ++FLDE+ Sbjct: 410 HWQSSRKDGPLIKVNCGAIPDTLVDSELFGHEKGAFTGATRQKLGRFERANGGTIFLDEI 469 Query: 483 GDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRL 542 ++PL Q ++LRVL + ER+G + I D+R+IAAT+R+L++ V FR DL++RL Sbjct: 470 AELPLPAQVRMLRVLHNKIIERVGGTESIPVDIRIIAATHRNLEERVKAGRFREDLWFRL 529 Query: 543 NVFPIHLPPLRERPEDIPLLAKAFTFKIARRLG-RNIDSIPAETLRTLSNMEWPGNVREL 601 NVFPI +PPLR R D+P L+ F K +R L + + + L+ WPGNVREL Sbjct: 530 NVFPIRIPPLRSRTMDVPALSDHFIEKKSRELKIHPTPPLSPDAMARLTAYSWPGNVREL 589 Query: 602 ENVIERAVLLTRGNVLQLS--LPDIVLPEPETPPAATVVALEGEDEY-QLIVRVLKETNG 658 ENVIER ++L G L P EP T L +D + + + +VL +NG Sbjct: 590 ENVIERELILNTGGPLTFQNLSPTPTHEEPAGHDMKTEDILSLDDLFVRHVKKVLVLSNG 649 Query: 659 VVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 + GP GAA+ + +K TL +RMK+LGI Sbjct: 650 KINGPGGAAEMMKIKPNTLRNRMKKLGI 677 >UniRef50_B8DJ70 Sigma54 specific transcriptional regulator, Fis family n=5 Tax=Desulfovibrio RepID=B8DJ70_DESVM Length = 601 Score = 538 bits (1386), Expect = e-151, Method: Composition-based stats. Identities = 188/482 (39%), Positives = 250/482 (51%), Gaps = 57/482 (11%) Query: 255 VDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGV 314 V + L +V E E + I PL M+GV Sbjct: 124 VPLSEPLVGQVALRGEPTWAASPEDWARPAW------AVDESIHAYAAYPLQFKGNMIGV 177 Query: 315 LKLAQCEEKVFTTTNLNLL-----RQIAERVAIAVDNALAYQEIHRLKERLVDENLALTE 369 + + +L LL + A+ ++ AV NA +++EI L+ L EN L Sbjct: 178 MAVFYDRPMRGVLADLMLLHRKMHKIFADSLSAAVVNARSFEEIQHLRRALELENEHLRG 237 Query: 370 QLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRN 429 ++ + I+G S + L+QV+MVA +D+TVL+LGE+GTGKEL+A+AIH+ S R Sbjct: 238 EVRRARAP-HSIVGDSPPLRRALEQVDMVAPTDATVLLLGESGTGKELVAQAIHDRSQRA 296 Query: 430 NRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLEL 489 +V++NC+A+P L ES+ FGH +GAFTGA R+GRF+LAD +LFLDEVG++PLEL Sbjct: 297 AAPLVRVNCSAIPRELFESEFFGHVKGAFTGALRDRVGRFQLADGGTLFLDEVGEIPLEL 356 Query: 490 QPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHL 549 Q KLLRVLQE FER+G + DVR+IAATNRDL+ V FR DL++RL+VFP+ L Sbjct: 357 QGKLLRVLQEGVFERVGEERSRSVDVRIIAATNRDLRADVEHGRFRQDLFFRLSVFPVAL 416 Query: 550 PPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAV 609 PPLR R +DIPLLA+ F RRL I + L + WPGNVREL+NVIER V Sbjct: 417 PPLRARRDDIPLLARHFVRASCRRLNLPEPRIAHRQMAELQSYPWPGNVRELQNVIERGV 476 Query: 610 LLTRGNVLQLSLPDIVLPEPETPPAA-----TVVALEG---------------------- 642 ++ G L L LP + +P AA +EG Sbjct: 477 IMAEGGRLVLDLPPEGGMQAVSPGAAFGMPGGASPVEGGGAHDAPWGTGETGSAGKTADF 536 Query: 643 ------------------EDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRL 684 E + I R L G V GP GAA+ LGL TTL SRMK L Sbjct: 537 GQTGAPDPAGIISEAHWRELQRANIERALTAAGGRVHGPGGAAELLGLPPTTLQSRMKTL 596 Query: 685 GI 686 G+ Sbjct: 597 GL 598 >UniRef50_C0Q938 Sigma-54 dependent DNA-binding response regulator n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0Q938_DESAH Length = 525 Score = 537 bits (1385), Expect = e-151, Method: Composition-based stats. Identities = 177/515 (34%), Positives = 284/515 (55%), Gaps = 16/515 (3%) Query: 183 ERDNFR-ILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTH 241 E D FR + I+ S LD+++ + + + + V+ N +NI ++ Sbjct: 5 ENDFFRQTALRIS----SSLDINKAMRNCMNYLKQHIPASGMYFVVYEPGLNIINILASI 60 Query: 242 YLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLC 301 K + + + + S+E + +++ +D + + + +L Sbjct: 61 MPKKIQGSARRISIPAEYQDDLKKRFSEESQIKIINDLNDEPEPLQKIVNLVFPFECSLL 120 Query: 302 LLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLV 361 + L T +G+ + + ++ + +L+ + E A+A+ N L +QEI RL + L Sbjct: 121 EMHLKLDGTRIGLFGVLSEGKHRYSEFHSHLITLVHEPFAVAISNILQHQEIQRLNKILS 180 Query: 362 DENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARA 421 D+N L ++ ++ IIG + V++ VE VA +DS V+I+GETGTGKE+IA A Sbjct: 181 DDNRYLHREMMHLTG--DTIIGSKFGLKDVMRMVEHVAPTDSPVMIMGETGTGKEVIANA 238 Query: 422 IHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDE 481 IH S R + +K+NC A+P L++S+LFGHE+GAFTGA +++ GRFE A ++FLDE Sbjct: 239 IHLSSRRKDSAFIKINCGAIPDNLIDSELFGHEKGAFTGAVSRKRGRFERAHNGTIFLDE 298 Query: 482 VGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYR 541 VG++PL+ Q +LLRVLQ+ E ER+G ++ I DVR++AAT+++L++MV +FR+DL++R Sbjct: 299 VGELPLQAQVRLLRVLQQHEIERVGGSETIPVDVRIVAATHKNLEEMVRTGQFRADLWFR 358 Query: 542 LNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLG-RNIDSIPAETLRTLSNMEWPGNVRE 600 LNVFPIH+PPLR R D+P L F K + L R S+ T+ + EWPGNVRE Sbjct: 359 LNVFPIHIPPLRHRTIDLPALTDYFLEKKSMELKIRKRPSLAPGTMEKMQAYEWPGNVRE 418 Query: 601 LENVIERAVL---LTRGNVLQLSLPDIVLPEPETP-----PAATVVALEGEDEYQLIVRV 652 L+N++ERA++ + P ++ P P+ ++ E I +V Sbjct: 419 LQNLVERALIFNQMKNDESQLTFDPQLINPIPKENMTLKREDGKIIRPLDEVMANHIQKV 478 Query: 653 LKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 L +TNG V G GAA L + TL RMK+L ID Sbjct: 479 LDQTNGKVEGKNGAASLLKINPGTLRGRMKKLKID 513 >UniRef50_C9RS71 Transcriptional regulator, NifA subfamily, Fis Family n=5 Tax=Bacteria RepID=C9RS71_FIBSS Length = 509 Score = 537 bits (1385), Expect = e-151, Method: Composition-based stats. Identities = 178/515 (34%), Positives = 274/515 (53%), Gaps = 31/515 (6%) Query: 186 NFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDK 245 ++ I+ A++ D+++L+ V + + + L L I ++ LD+ Sbjct: 10 EISVIQKISVAIIHERDVEKLLENVLGILESELGMLRGTFALLFGDT--LKIEASRGLDE 67 Query: 246 QHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQ---TLCL 302 + E +T V + +I DL R L T + Sbjct: 68 TEKQRGFYRMGEG--ITGHVAERGLSHVI-----PDLRKDSRFLNRTGSRHYETQVAFIC 120 Query: 303 LPLMSGDTMLGVLKLAQCEEKVFT-TTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLV 361 +PL+ ++G L + + + ++ LL IA I D A E+H +E ++ Sbjct: 121 VPLIHDGQVIGTLSIDRPVDGSTDLDRDVALLEIIAN---ITGDAANECIELHGEREAML 177 Query: 362 DENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARA 421 +EN L + L+N GE++G M V +QV VA SD+TVLI G +GTGKE+IARA Sbjct: 178 EENRKLRDMLSN---NPGELVGNCREMRQVYEQVRQVAPSDATVLIRGGSGTGKEMIARA 234 Query: 422 IHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDE 481 I NLS R ++ + +NCAA+P L+ES+LFGHE+GAFTGA +RIGR E A+ +LFLDE Sbjct: 235 IVNLSARKDKPFITLNCAALPENLVESELFGHEKGAFTGALNRRIGRAEAANGGTLFLDE 294 Query: 482 VGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYR 541 VGD+ ++ Q KLLR LQE+ F R+GSN+ + +DVR +AAT+R+L++++A +FR DL+YR Sbjct: 295 VGDLTMQTQVKLLRFLQERTFSRVGSNEELHSDVRFLAATSRNLEELIAQGKFREDLFYR 354 Query: 542 LNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVREL 601 LN+FPI +P L +R DI LLA+ F K+ R + + + + L + WPGNVREL Sbjct: 355 LNIFPITMPDLAKRKSDIILLAEHFIEKMNLRYNKKVGRLSTTAINLLMSYHWPGNVREL 414 Query: 602 ENVIERAVLLTRGNVLQ-LSLPDIVLPEPE-----TPPAATVVALEGED---EYQLIVRV 652 EN IER VL + + +LP + P+ + LE E ++I Sbjct: 415 ENCIERGVLTATDDCIHSYNLPPSLQTSLSVGSVGGTPSDKIAPLEVMMDNYEREIITEA 474 Query: 653 LKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 +K +G ++ A + LG+ + RM +LGI Sbjct: 475 IKRNDGNIS---AAGRDLGVSPRMMNYRMNKLGIK 506 >UniRef50_C7LPL8 Sigma54 specific transcriptional regulator with PAS/PAC sensor, Fis family n=2 Tax=Deltaproteobacteria RepID=C7LPL8_DESBD Length = 575 Score = 537 bits (1384), Expect = e-151, Method: Composition-based stats. Identities = 198/532 (37%), Positives = 290/532 (54%), Gaps = 15/532 (2%) Query: 166 QIQSRVVNNVDYELLCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISI 225 ++Q+ + E L R+ F L A D LV V ++ + Sbjct: 53 EMQNEELRQTQ-EALETSRNAFAELYDFAPAGYFSFDPQGLVRSVNLLGAQLLGLEREHL 111 Query: 226 -----VLRSHRKNKLNIYSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERD 280 + ++S H D F ++ + Sbjct: 112 LGKPMSRWIPDADGRKVFSKHCADVLRREGNDICEIWLQRANGMKFHARLRSIAKESVEG 171 Query: 281 DLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVL-KLAQCEEKVFTTTNLNLLRQIAER 339 M+ D + + L G L + + TN L+ +I R Sbjct: 172 THGAIRSMIVDVTEEEKLKIAL------QNAHGELEQKVMERTRELLLTNKRLVLEIGVR 225 Query: 340 VAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVA 399 +A +EI +LK+RL EN+ L + FGEIIG+S A+ V ++E +A Sbjct: 226 KDTEESLRMAIKEIKQLKDRLQAENIYLQHEAAQ-KFNFGEIIGQSSAIAHVFDKIEQIA 284 Query: 400 QSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFT 459 ++TVL+ GETG GK ++ARAIH S R +R MV +NC A+PA L+ES+LFG E+GAFT Sbjct: 285 SQNTTVLLQGETGCGKGVVARAIHARSARKDRAMVTINCTALPANLIESELFGREKGAFT 344 Query: 460 GASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIA 519 GASA+++GRFELAD ++FLDE+G+MP+ELQ KLLRV+Q+ EFERLGS + I+ DVR+IA Sbjct: 345 GASARQMGRFELADGGTIFLDEIGEMPMELQCKLLRVIQDGEFERLGSPRTIKVDVRIIA 404 Query: 520 ATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNID 579 A+NR L++ + + FR DLYYRLNVFPI +PPLR R +DI LL F K +++G+ I+ Sbjct: 405 ASNRKLEEEIKNGSFREDLYYRLNVFPITIPPLRARKDDIRLLVNFFVAKFNKKIGKKIE 464 Query: 580 SIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVA 639 +IP E L L N +WPGNVRELE+VIERA+++++G LQ+ P+P A V A Sbjct: 465 TIPKEALEALENYDWPGNVRELESVIERAIIISKGPSLQILDQFNTSPKPSETSGADVKA 524 Query: 640 LEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSAL 691 L + E I+ VL++TN V G GAA L + +TL +RM++ GI+++++ Sbjct: 525 LV-DLERDHIIHVLQKTNWRVEGKNGAAAILDINPSTLRARMRKFGINRNSI 575 >UniRef50_B8IZX3 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 RepID=B8IZX3_DESDA Length = 522 Score = 537 bits (1383), Expect = e-151, Method: Composition-based stats. Identities = 179/518 (34%), Positives = 250/518 (48%), Gaps = 38/518 (7%) Query: 185 DNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLD 244 +L + + D+ + + + K + + +I L S ++ + + L Sbjct: 17 QQLSLLYELAQIMNFTTDLTQALDKALKLMARQLHMMRGAITLISPHTGEIRTEAGYGLK 76 Query: 245 KQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLP 304 + E +T RV +S + I+ + L D I + +P Sbjct: 77 PAELRRGRYVRGEG--ITGRVIESGRPMYISNVSEEPLFLNRTRSRDLSKEGI-SFICVP 133 Query: 305 LMSGDTMLGVLKLAQC-EEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDE 363 + D ++G L + ++ + LL ++ + A E Sbjct: 134 IRLNDQVVGALSVDHLLVDEATLEDEMRLLTIVSTLLGHA-----------------ALE 176 Query: 364 NLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIH 423 ++ + +G SE M V Q+ VA S +TV + GE+GTGKEL ARAIH Sbjct: 177 TQGRMDEETSSPLRPRGFVGNSEGMQKVYAQIAQVAPSVTTVFLQGESGTGKELAARAIH 236 Query: 424 NLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVG 483 + S R + + +NCAA+P L+ES+LFGHERGAFTGASA R GRFELA +LFLDEVG Sbjct: 237 SGSARAGKPFISLNCAALPENLIESELFGHERGAFTGASATRKGRFELAHGGTLFLDEVG 296 Query: 484 DMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLN 543 ++ L Q KLLRVLQE+ FERLG + DVR I ATNR+L+ MVA FR DL+YRLN Sbjct: 297 ELSLMTQAKLLRVLQERAFERLGGMETHYVDVRFITATNRNLEHMVAKESFRRDLFYRLN 356 Query: 544 VFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELEN 603 VFPI+LPPLR RPEDI LA F K A+ GR + + L WPGN+RELEN Sbjct: 357 VFPIYLPPLRGRPEDILPLANHFIRKFAQANGRENVRLSLSVMDMLQRYAWPGNIRELEN 416 Query: 604 VIERAVLL--TRGNVLQLSLPDIVLP------------EPETPPAATVVALEGEDEYQLI 649 V+ERAVLL G VL LP + + ++ E E I Sbjct: 417 VMERAVLLLGREGLVLPQHLPPALHGAHCAGISGESACAARPGFSGSLQDQLDELERASI 476 Query: 650 VRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 V L+ + G + AA LGL + RMK+ I+ Sbjct: 477 VEALEFSQGQMG---KAAASLGLTERIMALRMKKYEIN 511 >UniRef50_B8FB78 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FB78_DESAA Length = 1036 Score = 536 bits (1382), Expect = e-151, Method: Composition-based stats. Identities = 199/542 (36%), Positives = 299/542 (55%), Gaps = 20/542 (3%) Query: 156 FTQIVSVVTEQIQSRVVNNVDYELLCRERDNFRIL---VAITNAVLSRLDMDELVSEVAK 212 +S V EQ + L R+L ++ N + S D EL+ + Sbjct: 507 MADRLSGVLEQYHEETIPPDLKPLFRTRASAQRLLSGIYSLGNDMASVQDGKELLHSILS 566 Query: 213 EIHYYFDIDDISIVLRSHRKNK--LNIYSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKE 270 ++ + +I + + + + + ++ L E R+ + Sbjct: 567 TVNQLTGAERGAIFVANEDPHGPPMKLRASRNLTADQVERPAFEPSM------RLIQQAA 620 Query: 271 MLLINLHE--RDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLA-QCEEKVFTT 327 L ++ R + AP E + ++C P++ LGVL + F Sbjct: 621 SLGVDKKSFIRKESAPPEEWSAGSSEAARSSICA-PIIFKGKTLGVLYHDNRLLNSAFKE 679 Query: 328 TNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEA 387 ++ LL A + A A+DNA A +EI RLK R + + + + + + E+IG+S+A Sbjct: 680 SDFELLSFFAAQAAAALDNANAQEEIERLK-RAMAQGGRIQSRPSFSRENYKEVIGKSQA 738 Query: 388 MYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLE 447 + +L +E VA++ S VLILGETG GKEL A A+H S R + VK NC+A+ L+ Sbjct: 739 VRKMLHLIEQVAKTGSNVLILGETGVGKELAANAVHYHSKRRGKAFVKANCSALTETLIN 798 Query: 448 SDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGS 507 S+LFGHE+GAFTGAS++RIGRFELADK ++FLDE+GD+PL++Q LLRVLQ EFER+G Sbjct: 799 SELFGHEKGAFTGASSRRIGRFELADKGTIFLDEIGDLPLDVQANLLRVLQSSEFERVGG 858 Query: 508 NKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFT 567 N+ I++D RLIAATNRDL+++ AD++FR DLYYRLNVFPI +PPLR+R EDIPLLA+ F Sbjct: 859 NETIRSDFRLIAATNRDLERLAADKKFRQDLYYRLNVFPILVPPLRDRKEDIPLLAEQFI 918 Query: 568 FKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLP 627 A+++ + I E + L WPGN+REL NVIER ++L+ G + + Sbjct: 919 RGFAQKMQIEVKKISREEMNKLLKYHWPGNIRELANVIERGMILSSGPLFTA---PDLEG 975 Query: 628 EPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 + + +LE E+E I+ L++ N V GP G A+ L + +TL +RMK+LGI Sbjct: 976 QTDGHSLHRPHSLE-ENERSHILWALEQKNWKVRGPGGVAEFLDINPSTLAARMKKLGIK 1034 Query: 688 KS 689 + Sbjct: 1035 RP 1036 >UniRef50_C1ZA32 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains n=10 Tax=Bacteria RepID=C1ZA32_PLALI Length = 551 Score = 536 bits (1382), Expect = e-150, Method: Composition-based stats. Identities = 194/481 (40%), Positives = 280/481 (58%), Gaps = 24/481 (4%) Query: 229 SHRKNKLNIYSTHYLDKQHPA-------HEQSEVDEAGTLTERVFKSKEMLLINLHERDD 281 H+ L + ++ P+ + + R+ + + + ++ Sbjct: 67 QHQTECLKLVASRGSSLTTPSITWTAVDGAFQYMPYSVRKVGRIAATG-LAIEEPEIQEP 125 Query: 282 LAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVA 341 L + I+ PL+ +LGVL + ++ + LR IA+ A Sbjct: 126 LPEWIARPEWVRAEGIRGFAGQPLIHRGKVLGVLGV--FARQIIGEECMGWLRMIADHAA 183 Query: 342 IAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQS 401 A+ A A+ EI L++RL EN L E++ FGE+IG+S A+ +V +Q+++VA + Sbjct: 184 AAIVTARAFAEIESLRKRLELENEYLREEVTG-SGAFGELIGQSPALGTVSQQIDLVAPT 242 Query: 402 DSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGA 461 DS+VLILGE+GTGKEL+AR IH S R+NR ++K+NCAA+P L ES+ FGH +GAFTGA Sbjct: 243 DSSVLILGESGTGKELVAREIHRRSRRSNRPLIKVNCAAVPRELYESEFFGHAKGAFTGA 302 Query: 462 SAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAAT 521 R+GRFELAD +LFLDEVG++PLELQ KLLRVLQE E ER+G + + +VR+IAAT Sbjct: 303 LRDRVGRFELADGGTLFLDEVGEIPLELQAKLLRVLQEGELERVGEERTRKVNVRIIAAT 362 Query: 522 NRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSI 581 NRDL+ FR DLYYRL+VFP+ +PPLR R ED+PLLA F AR++GR + Sbjct: 363 NRDLRMEAEAGRFRQDLYYRLSVFPVEVPPLRRRKEDVPLLASHFLRIAARKVGRPQPLL 422 Query: 582 PAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEP----ETPPAATV 637 ++ L +WPGNVREL++VIERAV+ + L + LP +P ++P +T Sbjct: 423 TLAIVQKLQQYDWPGNVRELQHVIERAVITSTNERLLIELPQTTGSKPTRSVKSPSNSTA 482 Query: 638 VALE---------GEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDK 688 + E + E + I+ L+ T+G ++GP GAA LGLK TTL SR+K LGI Sbjct: 483 TSQEIPIRTDLEIRQMEAENILAALQATHGKISGPGGAAALLGLKPTTLASRIKALGIKP 542 Query: 689 S 689 + Sbjct: 543 A 543 >UniRef50_D2R1I6 Sigma 54 interacting domain protein n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R1I6_9PLAN Length = 539 Score = 535 bits (1379), Expect = e-150, Method: Composition-based stats. Identities = 187/439 (42%), Positives = 262/439 (59%), Gaps = 11/439 (2%) Query: 254 EVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLG 313 ++ K+ L + D +R +I + PL+ +LG Sbjct: 102 RFPVGVRKVGQIAKTGRSLEVADVAHDHGWAADRTWIS--NERIASFAGHPLLHRGEVLG 159 Query: 314 VLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNN 373 VL L + + LR IA+ +A A+ NA A EI LK+RL EN L E++ Sbjct: 160 VLGLFARQSP--GESCFEWLRMIADHLAAAIANARALDEIDSLKKRLEQENEYLREEVQQ 217 Query: 374 VDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRM 433 + S FG++IG+S ++ + +Q+E+VA +DS VLILGE+GTGKE++AR +H S R +R + Sbjct: 218 ITS-FGDLIGQSPSLQATTRQIELVAPTDSAVLILGESGTGKEVVARELHRRSRRADRPL 276 Query: 434 VKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKL 493 +K+NCAA+P L ES+ FGH +G+FTGA R GRFELAD+ +LFLDE+G++PL+LQ KL Sbjct: 277 IKVNCAAIPRELYESEFFGHAKGSFTGALRDRAGRFELADRGTLFLDEIGEIPLDLQAKL 336 Query: 494 LRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLR 553 LRVLQE E ER+G + + DVR+IAATNR+L+ FR DL+YRL+VFP+ LPPLR Sbjct: 337 LRVLQEGELERIGEERTRRIDVRIIAATNRNLRTEAEAGRFRQDLFYRLSVFPMELPPLR 396 Query: 554 ERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTR 613 +R EDIPLLA+ + + +R+LGR + ++ L WPGNVREL++V+ERA ++ Sbjct: 397 KRVEDIPLLAEHYLDRFSRQLGRPRPRLTLAHVQDLQRYPWPGNVRELQHVLERACIVAT 456 Query: 614 GNVLQLSLPDIVL------PEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAA 667 LQ P L EP +P A E E I + L +NG + G GAA Sbjct: 457 DGKLQFDFPKDQLKRREEPAEPSSPQHILTAAELRELEASNIRKALAASNGKIYGKNGAA 516 Query: 668 QRLGLKRTTLLSRMKRLGI 686 RL +K TTL SR+K LGI Sbjct: 517 SRLAMKPTTLASRIKALGI 535 >UniRef50_C7LTG8 Sigma54 specific transcriptional regulator with PAS/PAC sensor, Fis family n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LTG8_DESBD Length = 806 Score = 535 bits (1379), Expect = e-150, Method: Composition-based stats. Identities = 188/510 (36%), Positives = 288/510 (56%), Gaps = 22/510 (4%) Query: 192 AITNAVLSRLDMDELVSEVAKEIHYYFDI--DDISIVLRSHRKNKLNIY-STHYLDKQHP 248 + A + +EL + + + + + I+ +H + + Sbjct: 305 RLKQAEAALRASEELNRKTLQALPAHIAVIDRQGGIIAVNHAWEEFARHNDADGSPSVTV 364 Query: 249 AHEQSEV-----DEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLL 303 EV +L E + E +L + + E + + + Sbjct: 365 GANYCEVCRRATAGKDSLAEVALRGIEAVL---NGTSEQFMMEYPCHSPQEERWFFMTVA 421 Query: 304 PLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNAL-----AYQEIHRLKE 358 PL G V+ E+V L++ + + + V+ A +EI++LK+ Sbjct: 422 PLGLGGENGAVITHLNISERVRFEVE---LQKAHDELELRVEKRTYELRAANKEINQLKD 478 Query: 359 RLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELI 418 RL EN+ L +++ + FGEIIG+S+++ ++ +Q+E V+ ++TVL+LGETGTGK L+ Sbjct: 479 RLQAENICLRQEVAR-EYNFGEIIGQSDSIVNMFEQIEQVSPLNATVLLLGETGTGKGLV 537 Query: 419 ARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLF 478 ARAIH S R R M+ +NCAA+PA L+ES+LFG ERGAFTG++AQ++GRFELAD ++F Sbjct: 538 ARAIHARSARKGRSMITVNCAALPANLIESELFGRERGAFTGSNAQQLGRFELADGGTIF 597 Query: 479 LDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDL 538 LDE+G+MPLELQ KLLRV+Q+ E ERLGS + I+ DVR+IAA+NR+L+ + FR DL Sbjct: 598 LDEIGEMPLELQSKLLRVIQDGEMERLGSPRTIKVDVRIIAASNRNLQDEIRKGRFREDL 657 Query: 539 YYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNV 598 +YRLNVFPI +PPLR+R DI LL F K ++ G+NI ++P TL L WPGNV Sbjct: 658 FYRLNVFPISIPPLRQRDGDIALLINFFVAKFNKKTGKNIKTVPKNTLNALQEYHWPGNV 717 Query: 599 RELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNG 658 RELE+V+ERAV+ + G+ LQ+ D +T P + + E I++VL++T Sbjct: 718 RELESVVERAVITSPGSSLQI--LDRFETSRKTVPVDGNIKALVDLERDHILQVLRKTGW 775 Query: 659 VVAGPKGAAQRLGLKRTTLLSRMKRLGIDK 688 + G GAA L + +TL +RM++ GI + Sbjct: 776 RIEGKSGAAALLEINPSTLRARMRKFGIRR 805 >UniRef50_C8X5C3 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X5C3_DESRD Length = 521 Score = 534 bits (1377), Expect = e-150, Method: Composition-based stats. Identities = 173/498 (34%), Positives = 267/498 (53%), Gaps = 10/498 (2%) Query: 197 VLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQHPAHEQSEVD 256 + S LD+D+ + + + + D + + + L + + + V Sbjct: 16 ICSSLDIDKALERCLEYVKQFIPADSMHLSVYLPDVQMLQFVAVAGEGYEVTNADAISVP 75 Query: 257 EAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLK 316 + + +++ + E +L + ++ ++ L + +G + Sbjct: 76 AIDWEAPENQRPGMPFVHVVNDPANEPEVETVLHQLNLSSDFSVMVMHLYLDGSSIGEVA 135 Query: 317 LAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDS 376 + +T + L + E ++IA+ NAL ++E+ RL E L D++ ++L Sbjct: 136 VRSQGTHKYTEEHGRLFVLLREPLSIALANALKHREVVRLNELLADDSRYFQQELRAKQG 195 Query: 377 EFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKM 436 + E++G + V++Q + VAQ D+ VL+LGETG GK +IA IH LS R M+ + Sbjct: 196 Q--EVVGAEFGLRGVMEQAQQVAQLDNPVLLLGETGCGKGMIADTIHKLSRRAQGPMITV 253 Query: 437 NCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRV 496 NC A+PA LLES+LFGHE+GAFTGA Q+ GRFE A ++FLDE+G++PLE Q KLL V Sbjct: 254 NCGAIPASLLESELFGHEKGAFTGAERQKRGRFERAQGGTVFLDEIGELPLESQVKLLHV 313 Query: 497 LQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERP 556 LQ +E ER+G ++ I D+R+IAATNRDL MV+ +FR DL+YRLNVFP+ +PPLR+R Sbjct: 314 LQHKEIERVGGSQTIALDIRIIAATNRDLAGMVSSGQFREDLWYRLNVFPVMVPPLRQRK 373 Query: 557 EDIPLLAKAFTFKIARRLGRN-IDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGN 615 EDIP L + F A L +P+ L L WPGNVRELEN IERA++ T G Sbjct: 374 EDIPALVRYFLQHKAVELKLPSRPKLPSGALDKLMAYHWPGNVRELENFIERALIQTPGG 433 Query: 616 VLQLS-LPDIVLPEPETPPAATVVALEGEDE------YQLIVRVLKETNGVVAGPKGAAQ 668 L++ L D +L T + + + I + L+ G ++GP GAA+ Sbjct: 434 ELEIDSLLDNLLQTDGTRGSWEPEVNSNQLPSLETVCAEHIRKALRRAGGKISGPGGAAE 493 Query: 669 RLGLKRTTLLSRMKRLGI 686 LG+ TL RM ++GI Sbjct: 494 MLGVHPNTLRQRMDKMGI 511 >UniRef50_B8F9P9 Sigma 54 interacting domain protein n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8F9P9_DESAA Length = 514 Score = 534 bits (1375), Expect = e-150, Method: Composition-based stats. Identities = 179/508 (35%), Positives = 272/508 (53%), Gaps = 10/508 (1%) Query: 185 DNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYS-THYL 243 D + T + +++++ + + + + + + + ++ +Y+ Sbjct: 2 DENKFFREATLRICGSIEIEKALFDCLDYLKNFIPAESVYLHFIDLKEKTGVVYAMADGG 61 Query: 244 DKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLL 303 + L E +L++ ++ L + + G I++L ++ Sbjct: 62 GGRQLNIRFDYPAPVWRLIGDGSDLPEEVLLDRADKGALGKHMLKIAGLSG--IRSLMMM 119 Query: 304 PLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDE 363 L G +GV+ E F +L+ LR + A+A+ N+ Y E+ LK L D+ Sbjct: 120 RLSLGSKEVGVIAFEARGESRFRREHLHRLRLLQSPFAVAISNSRRYIELLELKNLLADD 179 Query: 364 NLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIH 423 N L ++L + S EIIG + V++QV VA S VL++GETG GKE+IA AIH Sbjct: 180 NKYLQQELLSQKS--DEIIGADFGLKHVMQQVNKVAPLSSPVLLMGETGVGKEVIANAIH 237 Query: 424 NLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVG 483 S R N +K+NC A+ L++S+LFGH RGAFTGA + GRFE A + S+FLDE+G Sbjct: 238 KYSSRRNEPFIKVNCGAISETLIDSELFGHVRGAFTGAFENKRGRFERAHQGSIFLDEIG 297 Query: 484 DMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLN 543 ++P Q +LLRVLQE EFE +GS K I+ D R+IAATNR+L+ MVA+ FR DLY+RL Sbjct: 298 ELPKAAQLRLLRVLQEMEFEPVGSAKTIKVDARVIAATNRNLEDMVAEGSFRKDLYFRLK 357 Query: 544 VFPIHLPPLRERPEDIPLLAKAFTFKIARRLG-RNIDSIPAETLRTLSNMEWPGNVRELE 602 VFPI++PPLRER DIP L + F K R +G S+ ++ L EWPGNVRELE Sbjct: 358 VFPIYIPPLRERACDIPALTQYFMHKKYREMGFAEYPSLAPGAVKRLEAYEWPGNVRELE 417 Query: 603 NVIERAVLLTRGNVLQLSLPDIVLPE--PETPPAATVVALEGEDE--YQLIVRVLKETNG 658 N +ERA++++ G L P PE P + DE I+++L T G Sbjct: 418 NAVERAMIVSGGKTLHFDDSGFEKPRCVPEEAPHDAEDSPAMLDEVISSHIIKMLHRTKG 477 Query: 659 VVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 + G GAA+ +G+ TL ++M++LGI Sbjct: 478 KINGEDGAARAMGVNPATLRNKMRKLGI 505 >UniRef50_A8FQ36 Formate hydrogenlyase transcriptional activator, putative n=9 Tax=Shewanella RepID=A8FQ36_SHESH Length = 518 Score = 533 bits (1373), Expect = e-149, Method: Composition-based stats. Identities = 171/516 (33%), Positives = 280/516 (54%), Gaps = 19/516 (3%) Query: 183 ERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHY 242 E + T + S L ++E + I + ID I + + + + + Sbjct: 9 EESMEKFYYKATQCLCSSLQLEESLQSYFDYIKSHLPIDGIYLNIYRPDFSDIQFIA--Q 66 Query: 243 LDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCL 302 ++ Q + + + + E + +I + +L + + +I+++ L Sbjct: 67 VNDQQSSTLDRRIPISNEMCEALQDLDRP-IIRIVNDIELDTVTQFVAPQVIPEIKSVIL 125 Query: 303 LPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVD 362 L ++SG+T LGV+ + VF ++++L + ++ L + + R E L + Sbjct: 126 LRMVSGNTHLGVVGFYAKQAGVFRPRHVDMLEPHMQTFSLITAFNLKGRNLLRANEALAE 185 Query: 363 ENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAI 422 +N +L LN + ++G + V++QVE +A+ ++TVL+LGETG GKE+IA AI Sbjct: 186 QNQSLKRTLNICNG----VVGAHSGLKHVMQQVESIAKLNTTVLMLGETGCGKEVIANAI 241 Query: 423 HNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEV 482 H LS R N+ +K+NC A+P L++S++FG+ERGAFTGA +++ G FE A+ ++FLDE+ Sbjct: 242 HELSLRANKPFIKVNCGAIPESLIDSEMFGYERGAFTGAESRKAGYFEQANGGTIFLDEI 301 Query: 483 GDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRL 542 G++PL +Q +LLRVLQ R+G + +Q D+R+IAAT+R+LK MV+ EFR DL+YRL Sbjct: 302 GELPLSVQVRLLRVLQNSTITRVGGHDSVQLDIRVIAATHRNLKAMVSTGEFREDLWYRL 361 Query: 543 NVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRN-IDSIPAETLRTLSNMEWPGNVREL 601 +FPI +P LR+R DIPLL + F ++ + ++ + + E L LS WPGNVREL Sbjct: 362 AIFPIEIPSLRQRRTDIPLLVQHFIEMLSAKFNQDQLPRVAPEQLAILSQYHWPGNVREL 421 Query: 602 ENVIERAVLLTRGNVLQLSL--PDIVLPEPE--------TPPAATVVALEGE-DEYQLIV 650 NV+ERA++ L P++ E P AT + E + I Sbjct: 422 INVLERAIIQHPKGPLNFDFLVPEVKAEHKEKRGETIIVDPSHATDKLVPLETMTRKYIE 481 Query: 651 RVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 L+ T G + GP GAAQ L + T+ S+MK+LGI Sbjct: 482 HALRVTGGKLYGPGGAAQLLDINPNTMRSKMKKLGI 517 >UniRef50_Q73KY8 Sigma-54 dependent transcriptional regulator, putative n=1 Tax=Treponema denticola RepID=Q73KY8_TREDE Length = 505 Score = 532 bits (1372), Expect = e-149, Method: Composition-based stats. Identities = 179/512 (34%), Positives = 275/512 (53%), Gaps = 23/512 (4%) Query: 183 ERDNFRILVAITNAVLSR-LDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTH 241 +RD L+ + + S D+ L+ ++ + + D S+++ +L Sbjct: 8 KRDKLNTLINTSLLINSNYSDLSVLLEKIVESAMDVVEGDAASLLMLEPDGERLRFEIAI 67 Query: 242 YLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLC 301 ++D + V K +IN D ++ + G + + + Sbjct: 68 GPKGIEAKKMVLDLD---GIAGWVIKYNRSAIINDVLSDP--RFDPTVQKVTGYKNRNMI 122 Query: 302 LLPLMSGDTMLGVLK-LAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERL 360 +P+ D +GV++ L + EEK F + +LN+L A + AIA NA Y E+ Sbjct: 123 AVPMRIKDECIGVIEVLNKREEKDFDSDDLNVLELFATQTAIAYQNAKHY-------EKS 175 Query: 361 VDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIAR 420 +E + L +QL D + I +S+ M L+ +A SD++VLILGE+G GKELIA Sbjct: 176 REEIICLQDQLEQ-DRGYHTFIAKSKVMNEKLELCRNIAASDASVLILGESGVGKELIAE 234 Query: 421 AIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLD 480 +H S R N +++NCAA+P GLLES+LFGH RGAFT A + R GRFELADK ++FLD Sbjct: 235 QLHLNSRRVNNPFIRVNCAALPEGLLESELFGHVRGAFTDAISDRKGRFELADKGTIFLD 294 Query: 481 EVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYY 540 E+GD+PL LQ KLLRVLQE FER+GSNK + D R+IAATN++++++V +FRSDLYY Sbjct: 295 EIGDIPLTLQTKLLRVLQEMAFERVGSNKTLTVDTRIIAATNKNIEELVRQGKFRSDLYY 354 Query: 541 RLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRE 600 RLNV PI++PPLR R +DI LA F K ++ + + + + ++ WPGN+RE Sbjct: 355 RLNVLPIYIPPLRNRKDDIQELAHFFLKKFSKEVKKPFLGFSPDAEKLINAYSWPGNIRE 414 Query: 601 LENVIERAVLLTRGNVLQLSLPDIVLPEPETPPA-----ATVVALEGEDEYQLIVRVLKE 655 LEN +ERA +L + ++ + P + + + + IV++L E Sbjct: 415 LENAVERACVLGKPPYIEEKDLLLKFESSSFEPEVNYSNPDLKSAVNDFKKSFIVKILNE 474 Query: 656 TNGVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 AA++LG++RT L +K L I Sbjct: 475 HKW---NQTAAAEKLGIQRTYLSRLIKELEIK 503 >UniRef50_B8FMY7 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FMY7_DESAA Length = 525 Score = 532 bits (1371), Expect = e-149, Method: Composition-based stats. Identities = 177/508 (34%), Positives = 266/508 (52%), Gaps = 20/508 (3%) Query: 192 AITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQHPAHE 251 T A+ +++ ++ + Y D ++I L + D+++P Sbjct: 10 ETTQALGEDGELEAVIHHCLLVLAKYVPADGLAIQLLEPSLKSIRTIVWQPRDEENPISG 69 Query: 252 QSEVDEAGTL------TERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPL 305 + + T +S+ + I + R + P L G ++ + L Sbjct: 70 GFPEEMKEAILLMPPKTRDFLRSQTLPDIRIINRPEQDPISETLLAFTGRNYSSISMF-L 128 Query: 306 MSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENL 365 G + +A +T +L L + ++AV L QE+ +LK L D Sbjct: 129 KREGKRFGSVTVAAHGRDRYTQEDLELFSLLKTPFSMAVGALLLTQEVSKLKSILDD--- 185 Query: 366 ALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNL 425 +L EIIGR++ + V+K + ++A ++ VLI GETG GKELIA AIH++ Sbjct: 186 --RLELQKKRITPNEIIGRNQGLRDVVKMINLIAPQNTPVLINGETGVGKELIANAIHSM 243 Query: 426 SGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDM 485 S R + ++ +NC A+P L+ES+LFGHE GAFTGA+ +R GRFE A ++FLDE+G++ Sbjct: 244 SPRKDGPLIIVNCGAIPQTLVESELFGHEAGAFTGAAERRKGRFERAHHGTIFLDEIGEL 303 Query: 486 PLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVF 545 ++Q KLLRVLQ QE ER+G +K I+ + R+IAAT+R+L +MV++ FR DLYYR+NVF Sbjct: 304 KPDIQVKLLRVLQSQEIERVGGSKSIKVNARIIAATHRNLARMVSEGAFREDLYYRINVF 363 Query: 546 PIHLPPLRERPEDIPLLAKAFTFKIARRLGR-NIDSIPAETLRTLSNMEWPGNVRELENV 604 PI +PPLR R DIP L F K +R L + + + L N WPGNVRELEN+ Sbjct: 364 PIVVPPLRTRTNDIPALTDHFIRKKSRDLKIYPAPKLDNKAIYHLMNYHWPGNVRELENI 423 Query: 605 IERAVLLTRGNVLQLSLPDIVLPEPET------PPAATVVALEGEDEYQLIVRVLKETNG 658 IERA++L G L +I E + T + LE I VL T G Sbjct: 424 IERALILWDGGALSFKNLNIAKTEGGAKFGAYKEKSKTPLPLETVV-ADHIENVLALTKG 482 Query: 659 VVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 + GP GAA+ L + +TL ++MK+LGI Sbjct: 483 RINGPNGAAKILDVNPSTLRTKMKKLGI 510 >UniRef50_D1TMK5 Transcriptional regulator NifA n=1 Tax=Burkholderia sp. CCGE1002 RepID=D1TMK5_9BURK Length = 548 Score = 530 bits (1365), Expect = e-149, Method: Composition-based stats. Identities = 177/544 (32%), Positives = 251/544 (46%), Gaps = 53/544 (9%) Query: 186 NFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDK 245 +F ++ + + S + + + + I + KL + L Sbjct: 12 DFDVVTEVLKTLDSSRNAEHALKRSLWFLSRARGWRSAFIAVEQPD-GKLGGLCSTGLSD 70 Query: 246 QHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPL 305 E + R+ +S+ +++ + D + + L P+ Sbjct: 71 G--WREGMRFPSGEGIVGRIQESESAVVVPELDGDPMFDDRTGAVRVSNAERVALLGAPI 128 Query: 306 MSGDTMLGVL--KLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDE 363 LGVL + K +L LL +A +A AL + V E Sbjct: 129 RHEGRPLGVLVALCENPDGKRVFADDLQLLEVVASPIA----RALLLDREADPSRKSVQE 184 Query: 364 NLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIH 423 ++ + IGRS +M V QV VA + +TVL+ GE+GTGKELIARAI+ Sbjct: 185 EISRRRNAAAPIYQVDWAIGRSASMQHVFAQVHQVAPARTTVLLRGESGTGKELIARAIY 244 Query: 424 NLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVG 483 LS R ++ V +NCAA+ LLES+LFGHE+GAFTGA QR GRFELA +LFLDE+G Sbjct: 245 RLSPRKDQPFVSVNCAALTETLLESELFGHEKGAFTGAQTQRKGRFELAHGGTLFLDEIG 304 Query: 484 DMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLN 543 D+ Q KLLRVLQE+EFER+G ++ DVRLI ATNR+L++MV + EFR+DLYYR+N Sbjct: 305 DISPSFQAKLLRVLQEREFERVGGTTPVRVDVRLIVATNRNLEQMVREGEFRADLYYRIN 364 Query: 544 VFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELEN 603 V I LPPLRER EDIP +A+ F + R GR + E LR LS+ WPGNVRELEN Sbjct: 365 VVSIVLPPLRERREDIPEMAQYFLNRFNRENGRAL-HFNEEALRVLSSCYWPGNVRELEN 423 Query: 604 VIERAVLLTRGNVLQ----------------LSLPDIVLPEPETPPAATVVALEG----- 642 IER + + + L P P TV Sbjct: 424 CIERTATMAHHDTIGRSSFLCEIDQCLTKVLHHLEREDAVRPARPSDVTVSNALNVPAKF 483 Query: 643 -------------------EDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKR 683 EDE + ++ ++ V A AA+ LG+ + +++ Sbjct: 484 GAPERDAGGLGMHSGEHIPEDERERLLWAMERCGWVQA---KAARLLGITARQIGYALRK 540 Query: 684 LGID 687 GI Sbjct: 541 HGIK 544 >UniRef50_Q2RHS4 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Bacteria RepID=Q2RHS4_MOOTA Length = 748 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 164/355 (46%), Positives = 222/355 (62%), Gaps = 12/355 (3%) Query: 341 AIAVDNALAYQE--IHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMV 398 A+AV + LA + +L N L ++L +FG+++G S AM V + +E V Sbjct: 387 AVAVYHGLAENRMCLPYFIAQLEKSNFHLRQELKAFQGKFGQLVGNSAAMQEVYRLIEKV 446 Query: 399 AQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAF 458 A++D+TVLI GE+GTGKEL+ARAIH S R+ V +NCAA+P LLES+LFGH RGAF Sbjct: 447 AKTDATVLIRGESGTGKELVARAIHYHSRRSEAPFVSINCAALPETLLESELFGHARGAF 506 Query: 459 TGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLI 518 TGA + G FE A++ ++FLDE+GD+ L LQ KLLRVLQE EF R+G + + +VR++ Sbjct: 507 TGAVTAKKGLFEEANEGTIFLDEIGDISLGLQSKLLRVLQEGEFLRVGETRPTRVNVRVL 566 Query: 519 AATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNI 578 AATNRDL+K V D FR +L YRLNV I LPPLRER +DIPLLA+ F K +RLG+ + Sbjct: 567 AATNRDLEKAVKDGAFRPELLYRLNVITIWLPPLRERRDDIPLLARHFLEKSCQRLGKEV 626 Query: 579 DSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAA--- 635 + E + L +WPGNVRELENVIERAV+LT ++L + Sbjct: 627 NGFTHEAMDALIRADWPGNVRELENVIERAVILTESKRIELGDLPRQFRNMAAGASGWAF 686 Query: 636 ----TVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 + E +LI++ L+E+ GV A AA+ LGLKR+TL +KR + Sbjct: 687 TRGMSFKEAVAAYESRLILQALEESQGVQA---RAAEILGLKRSTLNEMIKRYNL 738 >UniRef50_C0QE85 FhlA n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QE85_DESAH Length = 492 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 179/495 (36%), Positives = 266/495 (53%), Gaps = 14/495 (2%) Query: 198 LSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQHPAHEQSEVDE 257 +S L ++ + V I + + +++VL +++L + + E Sbjct: 5 ISTLTCEKTMDIVLTAIRELIEYE-LAVVLSCEGRSRLRVLKAAGPAATKILEGYTFSLE 63 Query: 258 AGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKL 317 + + + L + + Y ++ + + PL DT+ GVL L Sbjct: 64 DRKDIAAIVQEGKPYLFD-EAEPHVDTYAGVVDFPAD---HSCMVTPLYLDDTLQGVLTL 119 Query: 318 AQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSE 377 FT N+ L+ +++ +++A+ + + + + ++ E L L Sbjct: 120 DHHSCNRFTPQNVRLVGTLSKLISLAIAQSNDKEALEKEHLAILQERNFL---LERNAGA 176 Query: 378 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMN 437 E+IG S + V MVA S + VLI GETGTGKE++ARA+H LS R + +N Sbjct: 177 LSELIGNSVSWNRVKDAAAMVAASQTPVLIQGETGTGKEVVARAVHRLSDRKGGPFIPVN 236 Query: 438 CAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVL 497 C+A+ AG+ ES+LFGHE+G FTGA + R GRFELAD +LFLDE+GD+PLE+QPKLLR L Sbjct: 237 CSAISAGVAESELFGHEKGGFTGAVSSRKGRFELADGGTLFLDEIGDLPLEIQPKLLRAL 296 Query: 498 QEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPE 557 QE++ ER+G I DVR+IAA++ DL V + FR DLYYRLNVFPI LPPLRER Sbjct: 297 QEKKLERIGGESTISVDVRIIAASHVDLYTAVRENRFREDLYYRLNVFPIRLPPLRERGS 356 Query: 558 DIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVL 617 DI +LA+ FT +I R G ++ E++ L +WPGNVR+L+N +ERA +L+RG V+ Sbjct: 357 DILILAEYFTGQIRARAGHKDLALAPESVDILLQADWPGNVRQLQNTLERAAILSRGGVI 416 Query: 618 QLSL------PDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLG 671 + P+ P AT + + +VL T G V G GAA+ L Sbjct: 417 RAEHIVADETPEDSFCLPGADLDATALLRFDVMVKAYLQKVLTRTGGKVYGKGGAAEILD 476 Query: 672 LKRTTLLSRMKRLGI 686 LK TTL S++K+ GI Sbjct: 477 LKPTTLHSKLKKYGI 491 >UniRef50_Q086E2 Two component, sigma54 specific, transcriptional regulator, Fis family protein n=1 Tax=Shewanella frigidimarina NCIMB 400 RepID=Q086E2_SHEFN Length = 516 Score = 529 bits (1362), Expect = e-148, Method: Composition-based stats. Identities = 182/372 (48%), Positives = 248/372 (66%), Gaps = 2/372 (0%) Query: 317 LAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDS 376 + Q T TNL L +I ER Y +I +LK++L EN L +++ Sbjct: 146 IVQKRTVELTKTNLQLGLEIEERKKAEASLRDTYTQIKQLKDKLQAENTYLQKEVAR-QF 204 Query: 377 EFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKM 436 F EIIG S+ + V ++VE VA +TVL+LGETGTGK ++ARAIH+ S R R ++ + Sbjct: 205 NFDEIIGSSKLLSQVFQKVEQVAPMHATVLLLGETGTGKGVVARAIHSRSSRKKRPLITV 264 Query: 437 NCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRV 496 +C +P L+ES+LFG ERGAFTG+ +++IGRFELAD +LFLDE+G+MPLE+Q KLLRV Sbjct: 265 DCTTLPVALIESELFGRERGAFTGSDSKQIGRFELADGGTLFLDEIGEMPLEMQAKLLRV 324 Query: 497 LQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERP 556 +Q+ EFERLGS + I+ DVR+IAATNR+L + V + +FR DLYYRLNVFPI LPPLR+R Sbjct: 325 IQDGEFERLGSPRTIKVDVRIIAATNRNLIEEVRNGKFREDLYYRLNVFPITLPPLRQRK 384 Query: 557 EDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNV 616 EDI LL F K +++G+ ID I + L TL +WPGNVRELE+ IERAV+L+ G Sbjct: 385 EDISLLVNHFLIKFNKKIGKQIDIITQDALNTLQQHQWPGNVRELESAIERAVILSEGKS 444 Query: 617 LQLSLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTT 676 LQ+ + T ++ AL E EY+ IV+VL++T + G KGAA LGL +T Sbjct: 445 LQILDRFESFDKLATIEEPSMKALV-ELEYEHIVKVLQQTGWRIEGNKGAALILGLNPST 503 Query: 677 LLSRMKRLGIDK 688 L +RM++ GI + Sbjct: 504 LRARMRKQGITR 515 >UniRef50_B8DQY9 Transcriptional regulator, NifA subfamily, Fis Family n=8 Tax=Desulfovibrio RepID=B8DQY9_DESVM Length = 579 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 165/452 (36%), Positives = 255/452 (56%), Gaps = 10/452 (2%) Query: 186 NFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDK 245 + L AI+ LD+++ + EV + + + +I L +L I ++H L Sbjct: 9 KLKALYAISQVFDRALDLEQALGEVLRVLSETLSMKRATITLPDRETGQLVIAASHGLTP 68 Query: 246 QHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPL 305 + +DE +T +F++ ++ D L +I + +P+ Sbjct: 69 EERGRGVYRLDEG--VTGTIFQTARPYIVRDVRTDPLFLDRTGARKVEKGKI-SFLGVPI 125 Query: 306 MSGDTMLGVLKLAQ-CEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDEN 364 + +GVL + + + V T+ ++ L +A VA + ++++ + L EN Sbjct: 126 LKQGAPIGVLNVDRLFSDDVSTSEDVEFLGIVATLVAQFLS---LNEQLNERVDTLRREN 182 Query: 365 LALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHN 424 + L ++ + ++ I+GRS AM V +Q+E VA + +TVL+LGE+G GK LIAR +HN Sbjct: 183 VKLRTRVLDERGDY--IVGRSAAMLDVQRQIERVAPTRATVLLLGESGVGKTLIARLLHN 240 Query: 425 LSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGD 484 LS R VK+NCA++P LLE++LFGHE+GAFTGA+A R GRFE A + ++FLDE+G+ Sbjct: 241 LSDRMVHPFVKVNCASIPETLLEAELFGHEKGAFTGAAAVRAGRFEEAHRGTIFLDEIGE 300 Query: 485 MPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNV 544 +P +Q KLLRV+Q++EFERLGSN+ + DVR++AATNRDL + FR DLYYRL V Sbjct: 301 LPPGIQAKLLRVIQDREFERLGSNQTHRVDVRIVAATNRDLALLSEQGRFRQDLYYRLCV 360 Query: 545 FPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENV 604 FPI +P LRERP+D+ L F K AR R + ++ + L L EWPGNVRE+EN+ Sbjct: 361 FPIRVPSLRERPDDVERLLNHFLAKAARDY-RRVITLAPDALGLLRRHEWPGNVREMENL 419 Query: 605 IERAVLLTRGNVLQLSLPDIVLPEPETPPAAT 636 IER +L+ + + +L T A Sbjct: 420 IERLAILSESGQIDRRFLEPLLEHSATENAQP 451 Score = 46.0 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 3/45 (6%) Query: 643 EDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 + E I+ L+ V AA LG+ + R++++G+ Sbjct: 526 DIERNEIIAALRRNGWV---QHRAAAALGITPRQMGYRIRKMGLS 567 >UniRef50_B3DZA5 Transcriptional regulator NifA, contains GAF, AAA-type ATPase, and DNA binding domains n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DZA5_METI4 Length = 529 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 178/546 (32%), Positives = 268/546 (49%), Gaps = 54/546 (9%) Query: 182 RERDNFRILVAITNAVLSRLDM-DELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYST 240 ++ F + I+ + S + + E K ++ + + I +R + L Sbjct: 2 KKNGEFVAIYEISKILTSSQPLLFQSFRESLKILNIHLKLQKSLIFIRKGQDPIL----- 56 Query: 241 HYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTL 300 L + E+V K+ +++ ++ + + + +L Sbjct: 57 --LAGCGNDQADNHFSFYYFFIEQVLKNGFPIVVPDIHKEPYFSSDISHEEDGTEEPISL 114 Query: 301 CLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERL 360 LP+ +GVL + E + L +++ L Q+I + Sbjct: 115 FCLPIRYERECIGVLVCEKKRESALEPLSETTLT-------LSLATNLFGQKIKLSMDNF 167 Query: 361 VDENLALTEQLNNVDSEFGEI--------IGRSEAMYSVLKQVEMVAQSDSTVLILGETG 412 + +L + G+I IG+S+ M +V+ V VA S STVL+ GE+G Sbjct: 168 KPIPFPQSLELPPPPRKNGDIQLKNNGGVIGQSKQMQAVMDLVYHVAPSRSTVLLRGESG 227 Query: 413 TGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELA 472 TGKE+IAR IH LS R +K+NC+A+P +LES+LFGHE+GAFTGA +R GRFELA Sbjct: 228 TGKEVIARTIHYLSPRKEGPFIKVNCSALPETILESELFGHEKGAFTGALFERKGRFELA 287 Query: 473 DKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADR 532 +LFLDE+GD+ +Q KLLRVLQE+EFER+G NK I+ DVR+I ATN++L++ V Sbjct: 288 HGGTLFLDEIGDISPAVQVKLLRVLQEREFERVGGNKTIRVDVRVITATNKNLEEAVLKG 347 Query: 533 EFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNM 592 EFR+DLY+R+NV I LPPLRER EDIPLLA KI + L R + I E L+ L N Sbjct: 348 EFRADLYFRINVVSISLPPLRERKEDIPLLADHILNKIGKELNRKL-RITPEALKLLINC 406 Query: 593 EWPGNVRELENVIERAVLLTRGNVLQ-----------------------LSLP----DIV 625 WPGNVRELEN +ERA +R N + +S P + Sbjct: 407 HWPGNVRELENCLERAATNSRNNWIDEIDVACRRNQCSSPMLWKKELQVISTPVVSSEEA 466 Query: 626 LPEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLG 685 ETP ++ L +D + I++ +++ V A AA+ L + L +K+ G Sbjct: 467 KSREETPRSSFFSPLISDDPKEKIIQAMEKCGWVQA---KAARLLNITPRQLGYALKKYG 523 Query: 686 IDKSAL 691 I+ Sbjct: 524 IEIKKF 529 >UniRef50_A8IQ96 Transcriptional regulator n=18 Tax=Proteobacteria RepID=A8IQ96_AZOC5 Length = 694 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 193/390 (49%), Positives = 248/390 (63%), Gaps = 22/390 (5%) Query: 304 PLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDE 363 PL ++G + + + ++ R+ E++ A+ E+ RL+ERL E Sbjct: 314 PLRDRGRLIGAVVVFR---------DVTQKREANEQLRAALA------EVDRLRERLEME 358 Query: 364 NLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIH 423 N L E++ S G IIGRSEA+ VL+QV++VA +D+TVLI GE+GTGKELIARAIH Sbjct: 359 NAYLQEEIRAETSHRG-IIGRSEAIKKVLRQVDLVAPTDATVLITGESGTGKELIARAIH 417 Query: 424 NLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVG 483 + S R R ++++NCAA+P L ES+ FGH RGAFTGA R+GRFELAD+ +LFLDEVG Sbjct: 418 DASERRERPLIRVNCAAIPRELFESEFFGHVRGAFTGALRDRVGRFELADRGTLFLDEVG 477 Query: 484 DMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLN 543 ++PLELQ KLLRVLQE +FER+G + Q DVR+IAATNRDLK V FR DL+YRL+ Sbjct: 478 EIPLELQSKLLRVLQEGQFERIGEERTRQVDVRIIAATNRDLKAAVRAGRFREDLFYRLD 537 Query: 544 VFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELEN 603 V PI PLRER EDIPLLA F + R+ + A +R L +WPGNVREL+N Sbjct: 538 VMPIESVPLRERREDIPLLAAHFLDGVRRKPADGPLQLSAGDMRRLQTYDWPGNVRELQN 597 Query: 604 VIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGEDEYQL-----IVRVLKETNG 658 VIER ++L R L + LPD P P LE E + +L I+ L+ G Sbjct: 598 VIERGIILARNGRLHIDLPDREAP-ATAQPVPPSAELETEADRRLRLRTSILAALEAAGG 656 Query: 659 VVAGPKGAAQRLGLKRTTLLSRMKRLGIDK 688 V+GP GAA+RLGLK TTL SRMK LGI Sbjct: 657 KVSGPGGAAERLGLKPTTLASRMKTLGITP 686 >UniRef50_A8ZV27 Transcriptional regulator, Fis family n=2 Tax=Desulfobacteraceae RepID=A8ZV27_DESOH Length = 510 Score = 527 bits (1359), Expect = e-148, Method: Composition-based stats. Identities = 193/414 (46%), Positives = 276/414 (66%), Gaps = 16/414 (3%) Query: 290 FDTWGNQIQTLCLLPLMS--GDTMLGVLKLAQCEEKVFTTTNLN-LLRQIAERVAIAVDN 346 F T G +I L + + T L +L + ++V NL L+++ + +A++ Sbjct: 101 FATIGRKIMHLNARRIYTEPDQTQLILLAIEDVTDRVSYRRNLEGLVKKKTAELTVALEE 160 Query: 347 A--------LAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMV 398 A + EI +LK++L E L E++ ++ IIG+S+ + VL ++E + Sbjct: 161 AEEKNRIAETSLSEIKKLKQQLEAERAYLQEEI-KLEYNHEHIIGQSDGLKYVLYKIEQI 219 Query: 399 AQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAF 458 A SD+TVL+LGETGTGKEL+ARAIHNLS R NR M+K+NCAA+P L+ES+LFGHE+GAF Sbjct: 220 ADSDTTVLVLGETGTGKELVARAIHNLSRRKNRTMLKVNCAALPTNLIESELFGHEKGAF 279 Query: 459 TGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLI 518 TGA A+ GRFE+A+ ++LFLDE+G++PLELQPKLLRVLQ+ EFERLGS+ + D R+I Sbjct: 280 TGAHARHTGRFEVANGTTLFLDEIGELPLELQPKLLRVLQDGEFERLGSSHSTKVDARII 339 Query: 519 AATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNI 578 AATNR+L++ V + FR DL+YRLNVFPI +PPLR+R +DIPLL + + KI+RR+G+ I Sbjct: 340 AATNRNLEEEVRNGNFREDLWYRLNVFPITMPPLRDRLDDIPLLVEFYVKKISRRMGKTI 399 Query: 579 DSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVV 638 ++IP++ + TL WPGNVRELENV+ERAV+ + G L+L + ++ P + + Sbjct: 400 ETIPSKIMETLQAYPWPGNVRELENVLERAVINSSGTKLRL-VDELKRPFRGLSSSEKTL 458 Query: 639 ALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSALI 692 A E IVRVL++T V G AA+ LGL R+TL +RM++L I I Sbjct: 459 AA---VERDHIVRVLEQTQWKVGGKNSAAEILGLDRSTLRARMRKLNISPPKTI 509 >UniRef50_A0LIA2 Sigma54 specific transcriptional regulator, Fis family n=7 Tax=Proteobacteria RepID=A0LIA2_SYNFM Length = 1139 Score = 526 bits (1356), Expect = e-148, Method: Composition-based stats. Identities = 182/360 (50%), Positives = 248/360 (68%), Gaps = 6/360 (1%) Query: 330 LNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMY 389 L ++ + ER + EI RLK +L +N+AL E+++ + S +I+ RS AM Sbjct: 784 LAVIEDVTERKLMQEQLQNRLLEIERLKGQLEQDNIALREEVSLL-SPHDDIVARSPAMR 842 Query: 390 SVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESD 449 VL +VE VA +DSTVLI GETGTGKELIARA+HNLS R R +V +NCA++P L+ES+ Sbjct: 843 QVLLRVEQVAPTDSTVLITGETGTGKELIARAVHNLSARKGRPLVTVNCASLPPTLMESE 902 Query: 450 LFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNK 509 LFG E+GA+TGA ++ GRFE+AD +LFLDEVG++P ELQ K+LRVL+E FERLGS K Sbjct: 903 LFGREKGAYTGALSRMAGRFEVADGGTLFLDEVGELPPELQAKMLRVLEEGRFERLGSTK 962 Query: 510 IIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFK 569 + +VR++AATNRDL ++V FR DLYYRLNVFPI +PPLRERPEDIP L AF + Sbjct: 963 SLHVNVRILAATNRDLAQLVQAGRFRRDLYYRLNVFPIAIPPLRERPEDIPPLVWAFIHQ 1022 Query: 570 IARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEP 629 +R+G+++ + ++ L WPGNVREL NVIE A++++ G+ L++ P ++ E Sbjct: 1023 FEKRMGKHVQRVLKRSMDALERHAWPGNVRELRNVIEHAMIVSSGSTLKV-FPPMIRAED 1081 Query: 630 ETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKS 689 + A V+ LE E E + I+RVL VAG GAA+ LGLK TTL +RMK+LG+ + Sbjct: 1082 SS---AEVLNLE-ESERRHILRVLTLAGWRVAGKGGAAEILGLKPTTLEARMKKLGVRRP 1137 Score = 44.4 bits (104), Expect = 0.015, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 50/101 (49%), Gaps = 3/101 (2%) Query: 261 LTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLA-Q 319 LTE+ + + +L+ L + A +++ + WG + + ++P M+G +G + A Sbjct: 457 LTEQARQGRIVLIPRLEDLPAEASFDKEMLGRWGARSTS--VIPFMAGGVAVGAMTFAMM 514 Query: 320 CEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERL 360 +E+ +N L+ A+ A A+ A Q++ +ERL Sbjct: 515 RQERELREELVNRLKLCAQVFANAIARKRAEQKLRESEERL 555 >UniRef50_C2KAU4 Sigma-54-dependent transcriptional regulator n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=C2KAU4_9FLAO Length = 519 Score = 526 bits (1355), Expect = e-147, Method: Composition-based stats. Identities = 190/514 (36%), Positives = 293/514 (57%), Gaps = 12/514 (2%) Query: 178 ELLCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNI 237 + L + ++ +T + + LD +L + +D ++ K + I Sbjct: 13 KRLQEMQKEQLMISRLTKELSTILDKKQLQLVINTSFKTELGFNDC--MMIRDIKGNIEI 70 Query: 238 YSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQI 297 ++ H +Q + L S E+LL +L E L P G ++ Sbjct: 71 LGIGTENQNHTTDQQLDRYVKNCL-----DSAELLLFDLKELSPL-PSCFTKAKNSGMRM 124 Query: 298 QTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLK 357 LP +S VL L T +L I+ +++I N +++ + Sbjct: 125 AVGLGLPAVSESK--NVLFLFYKSFISRDTIPERILNGISTQLSITFHNIDVQEQLKTFQ 182 Query: 358 ERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKEL 417 + + ++ + F I+G+SEAM + +Q+ VA S S V+I GETGTGKEL Sbjct: 183 GN-IRDFPKEVKEEKKSEHGFHGIVGQSEAMQFIFEQITQVAPSQSNVIIFGETGTGKEL 241 Query: 418 IARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSL 477 IA+A+H LS + ++M+++NCAA+PA L+ES+LFGHE+G+FTGA+ QR G+FE A S++ Sbjct: 242 IAQAVHELSEFSGKKMIRINCAAIPANLIESELFGHEKGSFTGATEQRKGKFEQAHNSTI 301 Query: 478 FLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSD 537 FLDE+G++PLELQ +LLRVLQE+E ER+G NK I+ + R+I ATNR+L+K VA+ FR D Sbjct: 302 FLDEIGELPLELQARLLRVLQEKEIERIGGNKRIKVNARIITATNRNLEKEVAEGRFRLD 361 Query: 538 LYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGN 597 LYYRLNVFPI LPPLRER EDIPLLA F K+ + G+ I+ ++ + W GN Sbjct: 362 LYYRLNVFPIELPPLRERKEDIPLLADYFLEKLYPKTGKKINGFSQNVVKMMMANPWLGN 421 Query: 598 VRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETN 657 +RELEN++ER++L +G++++ V+ T V L+ E E + I++++K+ N Sbjct: 422 IRELENMVERSMLTAKGDIIREMDFPKVINYQNTDQEVQVKTLQ-EFEKEYILKIIKKCN 480 Query: 658 GVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSAL 691 G + G GAA+ LGL TTL+S+M++LGI+K Sbjct: 481 GRIFGEIGAAKLLGLPPTTLISKMQKLGIEKKHY 514 >UniRef50_A4VJ57 Nitrogen fixation positive regulatory protein n=10 Tax=cellular organisms RepID=A4VJ57_PSEU5 Length = 521 Score = 526 bits (1355), Expect = e-147, Method: Composition-based stats. Identities = 170/508 (33%), Positives = 267/508 (52%), Gaps = 19/508 (3%) Query: 186 NFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDK 245 + L I + ++EL++E+ +H + + + + + L + + H + Sbjct: 21 QLQALAQIARILNRGRPIEELLAEILAVLHEDLGLLHGLVSICNPKDGSLQVGAVHSDSE 80 Query: 246 QH-PAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLP 304 A E + + + K +++ + + L+D +P Sbjct: 81 TVVRACESTRYRIGEGVFGNILKHGNSVVLGRIDAEPRFLDRLALYDMDLP----FIAVP 136 Query: 305 LMS-GDTMLGVLKLA-QCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVD 362 + + T +GVL L+ +A +A V + ++ + +VD Sbjct: 137 IKAVDGTTIGVLAAQPDRRADELMPERTRLMEIVARLLAQTVRLVVNLED----GQEVVD 192 Query: 363 ENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAI 422 E L ++ ++G + +M V QV VA+ +STVLILGE+GTGKELIA AI Sbjct: 193 ERDELRREVRAKYGFENMVVGHTASMRRVFDQVRRVAKWNSTVLILGESGTGKELIASAI 252 Query: 423 HNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEV 482 H S R ++ +V++NCAA+P LLES+LFGHE+GAFTGA QR GRFE AD +LFLDE+ Sbjct: 253 HYNSPRAHQPLVRLNCAALPETLLESELFGHEKGAFTGAVKQRKGRFEQADGGTLFLDEI 312 Query: 483 GDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRL 542 G++ Q KLLRVLQE E ER+G ++ ++ +VR++AATNRDL+ V +FR DLYYRL Sbjct: 313 GEISPMFQAKLLRVLQEGELERVGGSQTVKVNVRIVAATNRDLEHEVEQGKFREDLYYRL 372 Query: 543 NVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELE 602 NV I +PPLRER DIP LA+ KIAR+ GR + + LR L + WPGNVRELE Sbjct: 373 NVMAIRVPPLRERSADIPELAEFLLDKIARQQGRKLK-LTDSALRLLMSHRWPGNVRELE 431 Query: 603 NVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATV----VALEGEDEYQLIVRVLKETNG 658 N +ER+ +++ + + + + + P A V +A + D+ + ++ L++ Sbjct: 432 NCLERSAIMSEDGTISRDVVSLTGLDHDATPLAPVPEVDLADDSLDDRERVIAALEQAGW 491 Query: 659 VVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 V A AA+ LG+ + R++ L I Sbjct: 492 VQA---KAARLLGMTPRQIAYRVQTLNI 516 >UniRef50_Q1DC06 Sigma-54 dependent transcriptional regulator, Fis family n=3 Tax=Proteobacteria RepID=Q1DC06_MYXXD Length = 531 Score = 525 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 190/520 (36%), Positives = 273/520 (52%), Gaps = 26/520 (5%) Query: 185 DNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLD 244 + R L+ + A S D L+ + D ++ L +L + Sbjct: 13 KDARDLLELATAEDSVGD---LLRRGLDWLTRVVRFDLATVFLLKE--GRLVAVAARGSL 67 Query: 245 KQHPAHEQSEVDEAGTLTERVFKSK--EMLLINLHERDDLAPYERMLFDTWGNQIQTLCL 302 + S + +++ + H D P++ +L G + + Sbjct: 68 ANAKVRQHSLPLSEFPSLRQALETRRAKAFTEEDHAHGDGDPFDGVLDLPPG---HSCMV 124 Query: 303 LPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVD 362 +PL +GD GVL L + E + + ++L+ + +A A+ +A RL + + Sbjct: 125 VPLCAGDRCYGVLSLDRAECETYPQPVVDLVEVYGQMLATAIQSAEQRATFERLHRQDHE 184 Query: 363 ENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAI 422 L QL E +S M + ++ VA++D+ VLI GETGTGKE +ARAI Sbjct: 185 HAKLLEAQLGGDSEGILE-TSKSPVMRDLARRARQVAETDTPVLITGETGTGKERLARAI 243 Query: 423 HNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEV 482 H S R ++ V +NCAA+PAGLLES+LFGH +GAFTGA+ R GRF++A +L LDEV Sbjct: 244 HRWSARADQPFVTLNCAAIPAGLLESELFGHVKGAFTGATKDRAGRFQMAHGGTLLLDEV 303 Query: 483 GDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRL 542 G++P +LQ KLLR LQE+ FE +GS+K ++ DVR++AAT+ DL++ +A + FR DLYYRL Sbjct: 304 GELPFDLQAKLLRALQEKTFEPVGSDKTVRADVRILAATHVDLQQAIAQKRFREDLYYRL 363 Query: 543 NVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELE 602 +VFP+ LPPLRER ED+P L + A R GR + E L L EWPGN+REL Sbjct: 364 SVFPLRLPPLRERREDLPQLCAFLLEEQANRTGRRGMRVTPEGLVRLEAYEWPGNLRELA 423 Query: 603 NVIERAVLLTRGNVLQLS--------------LPDIVLPEPETPPAATVVALEGEDEYQL 648 N +ERA +LTRG L LP+ P P V+ L + + Sbjct: 424 NALERATILTRGTELGPESFDVPTRGAAVVAALPEEPAPAAGGPKRGPVLTLAA-VQREH 482 Query: 649 IVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDK 688 I+RVL T G V G GAA LGLK +TL SRMK+LGI + Sbjct: 483 IMRVLTLTRGRVYGANGAAALLGLKPSTLQSRMKKLGIAR 522 >UniRef50_Q2LUG3 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LUG3_SYNAS Length = 535 Score = 525 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 168/365 (46%), Positives = 250/365 (68%), Gaps = 6/365 (1%) Query: 331 NLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYS 390 ++ R + E+ + + A A+ EI RLK++L EN+ L +++ + FGEIIG S+ + S Sbjct: 170 SMARDVTEQHRLEAELAKAFDEIKRLKDQLEAENIYLRDEI-KLKEGFGEIIGASDVIKS 228 Query: 391 VLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDL 450 + ++ VA S +TVL GETGTGK + AR +H S R +R V +NCA++PA L+ES+L Sbjct: 229 TIHKIRQVAPSKTTVLFAGETGTGKGIFARFLHRESDRRDRPFVNVNCASLPANLIESEL 288 Query: 451 FGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKI 510 FG E+GA+TG++A++IGRFELA+ ++FLDE+G++P+ELQ KLL+V++E EFER+GS Sbjct: 289 FGREKGAYTGSTARQIGRFELANNGTIFLDEIGEVPMELQAKLLKVIEEGEFERIGSPHP 348 Query: 511 IQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKI 570 I+ DVR+IAATNRDL++ + FR DLY+RLN+FPI++PPLR+R DIPLL KAF K Sbjct: 349 IKVDVRIIAATNRDLQEEIKKGRFRQDLYFRLNIFPINIPPLRDRKGDIPLLVKAFVAKF 408 Query: 571 ARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQL-----SLPDIV 625 ++ R+I IPA+ + +L N WPGNVREL NV+ERAV+++ G+ LQL ++P Sbjct: 409 SKSHNRDIKRIPAKIMESLKNYAWPGNVRELINVMERAVIVSEGSELQLAEKIDAIPLDS 468 Query: 626 LPEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLG 685 + + + E + I++ L++T + GP+GAAQ L L+ TL +RMK+LG Sbjct: 469 SIRGDESFSTGSGETLADAEREHILKALQQTGWRIEGPRGAAQILDLQPNTLRARMKKLG 528 Query: 686 IDKSA 690 I + Sbjct: 529 IKRPG 533 >UniRef50_A6C332 Two component, sigma54 specific, transcriptional regulator, Fis family protein n=2 Tax=Bacteria RepID=A6C332_9PLAN Length = 1035 Score = 525 bits (1353), Expect = e-147, Method: Composition-based stats. Identities = 182/570 (31%), Positives = 279/570 (48%), Gaps = 64/570 (11%) Query: 169 SRVVNNVDYELLCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLR 228 R+ +D ++ + L + AV D + + + + +I L Sbjct: 479 DRIQRLIDRRFFRQKYQLDKALKRMNRAVGRLGDQRSIADRMLTSCREVLQVKNAAIYLL 538 Query: 229 SHRKNKLNIYSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERM 288 + + + L H + S V L E + + + +P +++ Sbjct: 539 NPERTQF-----DLLTGFHIENAPSAVPCGPELLEVLEGELAFQRVATGLLKEASPAQQL 593 Query: 289 LFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEK-VFTTTNLNLLRQIAERVAIAVDNA 347 L + I L G + L Q ++ +L L + + +IA+ + Sbjct: 594 LRLLGFDFIYN-----LELDGEFAGFVALGQRTTGSAYSAEDLTFLNAMGQITSIALHST 648 Query: 348 LAYQEIHRLKE--RLVDENLALTEQLNNV-------------------DSEFGEIIGRSE 386 +Q++ RL E R+ E + +L +V D + G I G S Sbjct: 649 KIHQDLRRLNEEMRIKVEKIDDQRRLVSVLQSELTNSQEIAERSTPAHDVQRGMIKGNSP 708 Query: 387 AMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLL 446 A+ SV++ V VA S+STVL+ GE+GTGKEL+A+A+H S R+ + +V++NCAA+ LL Sbjct: 709 AIRSVMETVRKVANSESTVLVRGESGTGKELLAQAVHENSSRHEKPLVRVNCAALSPSLL 768 Query: 447 ESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLG 506 ES+LFGH +GAFTGA R+GRFELA+ +LFLDE+GD+ L+ Q KLLRVLQE+ FER+G Sbjct: 769 ESELFGHVKGAFTGAHEDRVGRFELANGGTLFLDEIGDISLDTQVKLLRVLQERAFERVG 828 Query: 507 SNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAF 566 ++ + DVRLI AT+++L++ + + FR DLYYRLNV I LPPLRER EDI LA F Sbjct: 829 GSETLHVDVRLITATHQNLEQRITEGLFREDLYYRLNVISITLPPLRERREDIFELAFYF 888 Query: 567 TFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQL-SLPDIV 625 + A RLG+ I I + + L WPGN+R+LENVIERAV+L V+ + LP + Sbjct: 889 LKRTANRLGKRISHIDPDAIEALERAPWPGNIRQLENVIERAVVLAESEVITMKDLPADL 948 Query: 626 LPEPETPPAATVVA----------------------------LEGEDEYQLIVRVLKETN 657 L + + PA + E + + L E + Sbjct: 949 LEQKKRLPARVFETKNVRSDTTRRIPLSEVEVITFPGSQNHVDQRLTEPEQLKLALAECD 1008 Query: 658 GVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 G AA+ LG+ R+T S++K+ I Sbjct: 1009 G---NKAQAARLLGMPRSTYYSKLKKYDIT 1035 >UniRef50_D0LFQ8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LFQ8_HALO1 Length = 515 Score = 525 bits (1352), Expect = e-147, Method: Composition-based stats. Identities = 181/447 (40%), Positives = 250/447 (55%), Gaps = 31/447 (6%) Query: 265 VFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQT--LCLLPLMSGDTMLGVLKLAQCEE 322 + + E+ +I +R +L Q + L D ++ + L Q Sbjct: 44 ILRDNEVAVIVTDQRMPRMTGLELLLKAAEIQPDAVGIILTAYTDLDVLVDAINLGQIYR 103 Query: 323 KVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEII 382 V LR I A++ +E RL +L + L ++++ +FG II Sbjct: 104 YVTKPWEAKELRGILTH---ALERYALLRENQRLMAQLREYTGYLNQEIHGA-FDFGNII 159 Query: 383 GRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMP 442 G S A+ VL +VE VA ++STVL+ GETGTGKEL+A AIH S R N+ V++NCAA+ Sbjct: 160 GDSAALGEVLSKVEQVAPTNSTVLLRGETGTGKELVAHAIHINSSRENQPFVRVNCAALA 219 Query: 443 AGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEF 502 G+LES+LFGHE+GAFTGA AQR GRFELAD +LFLDE GD+P+E+Q KLLR LQE+EF Sbjct: 220 PGVLESELFGHEKGAFTGAVAQRPGRFELADGGTLFLDECGDLPMEVQIKLLRALQEREF 279 Query: 503 ERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLL 562 ER+G + I+ DVR+I+ATNRDL+ M+ FR DLYYRLNVFPIHLPPLR+R ED+P L Sbjct: 280 ERVGGTQTIKVDVRVISATNRDLEAMIEAGSFREDLYYRLNVFPIHLPPLRDRLEDLPAL 339 Query: 563 AKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLP 622 F K AR + L L + WPGNVRELEN+IERA++L RG L Sbjct: 340 VAHFIAKFARSGMTRTPGVRGAALDKLRSYTWPGNVRELENIIERAMILARGRELDADHL 399 Query: 623 DIVLPEPETPPAATVVALEGE----------------------DEYQLIVRVLKETNGVV 660 D P + ++ E E + I+ ++++N + Sbjct: 400 DFGRRAQNATPVSGTPSVISETASHSPPLIGDESKPLAERLLDSERREIIAAVEKSNNNI 459 Query: 661 AGPKGAAQRLGLKRTTLLSRMKRLGID 687 A AA+ LG+ R+TL RM++ G++ Sbjct: 460 AS---AARMLGINRSTLYYRMRKHGLE 483 >UniRef50_Q2RVQ1 Transcriptional regulator, NifA, Fis family n=3 Tax=Alphaproteobacteria RepID=Q2RVQ1_RHORT Length = 600 Score = 525 bits (1352), Expect = e-147, Method: Composition-based stats. Identities = 157/438 (35%), Positives = 246/438 (56%), Gaps = 15/438 (3%) Query: 189 ILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQHP 248 L ++ + S LD++ + +V + Y + + L+ + +L + + + ++ Sbjct: 27 TLYEVSKILGSTLDLEHSLHDVLNVLASYMQMRRGVVTLKDAQ-RQLEVVAVSGMTLRNA 85 Query: 249 AHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSG 308 ++ A + + V + +++ D D +++Q++ +P+ G Sbjct: 86 VEGEARYPLA--VAQEVVSTAMPMIVPSMAADPRFAAFAAEADGLDDEVQSMICVPIKGG 143 Query: 309 DTMLGVLKLAQCEEKVFT---TTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENL 365 G L + + ++ ++ L +A +A V + + ++RL++E Sbjct: 144 VKPFGSLSIERHRDRGTRFKFEHDVRFLTMVATLIAQTVS---LERRVVGDRDRLIEEKA 200 Query: 366 ALTEQLNNVDSEF-----GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIAR 420 L + L + ++GRS AM + QV +A S +TVL+ GE+GTGKELIA+ Sbjct: 201 RLEKALPKREKPLKGTILENVVGRSSAMMKISAQVRQIAPSRATVLLRGESGTGKELIAQ 260 Query: 421 AIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLD 480 AIH LS R+++ +K+NCAA+P LLES+LFGHE+GAFTGA+ +R GRFE+A +LFLD Sbjct: 261 AIHYLSPRSDKPFIKVNCAALPETLLESELFGHEKGAFTGATTERKGRFEMASGGTLFLD 320 Query: 481 EVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYY 540 E+G++ + Q KLLRVLQE EFER+G K I+ DVRL+AATN+DL+ V EFR+DLYY Sbjct: 321 EIGEITVHFQAKLLRVLQEGEFERVGGGKTIKVDVRLVAATNKDLEDAVTRGEFRADLYY 380 Query: 541 RLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRE 600 R+NV PI LP LRER ED+PLLA+ F K GR++ L + +PGNVRE Sbjct: 381 RINVVPIFLPALRERREDVPLLAQFFLTKFNEENGRSL-RFSEGALTAMGGCNFPGNVRE 439 Query: 601 LENVIERAVLLTRGNVLQ 618 LEN + RA L + V+Q Sbjct: 440 LENCVCRAATLAQDEVIQ 457 Score = 43.3 bits (101), Expect = 0.036, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 8/51 (15%) Query: 641 EGEDE-----YQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 +GEDE + IV +++ V A AA+ LG+ + +K+ I Sbjct: 548 DGEDESDAGQRERIVHAMEKAGWVQA---KAARLLGMTPRQIGYALKKHDI 595 >UniRef50_C7PLV9 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PLV9_CHIPD Length = 515 Score = 525 bits (1352), Expect = e-147, Method: Composition-based stats. Identities = 177/499 (35%), Positives = 282/499 (56%), Gaps = 17/499 (3%) Query: 196 AVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQHPAHEQSEV 255 A+ S + ++L + + + Y + I + ++ + H + + Sbjct: 31 AIGSIRNENDLFAFIHTVLRPYLHTISVLIGIADG-NGTISRWC-------HKTEGLTLL 82 Query: 256 DEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVL 315 ++E + ++ ++ D + + LF++ ++ + +LPL + G L Sbjct: 83 PLPQKVSEHFMQDNISGVLEMYAPDRRSALQTTLFNS---GVREMLILPLRNHTNSFGFL 139 Query: 316 KLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLAL--TEQLNN 373 L F + +++ A ++ A L + L + L +E++ E L Sbjct: 140 CLLAKHHNTFPKSLQISVKRYAGLLSAA---TLKLMLLDALPQWLQEEDMGGDGAELLLY 196 Query: 374 VDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRM 433 D +++ A+ V++QV VA +D+TVL+ GETGTGKEL A AIH S R + Sbjct: 197 NDLLPAKLV-SGIALRPVIQQVRQVAPTDATVLLTGETGTGKELFAEAIHLSSMRRQKAF 255 Query: 434 VKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKL 493 VK+NCAA+P L+ES+LFGHE+GAFTGA +RIG+FE+A+ +LFLDE+G++PL++Q KL Sbjct: 256 VKINCAALPPQLIESELFGHEKGAFTGAIHRRIGKFEMAEGGTLFLDEIGELPLDMQAKL 315 Query: 494 LRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLR 553 LRV+QE+E ER+G + I +VR+IAATNR L++ V FR DLYYRL VFPIHLP LR Sbjct: 316 LRVIQEKEIERIGGTETIPVNVRIIAATNRTLEEEVRQGRFRQDLYYRLYVFPIHLPALR 375 Query: 554 ERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTR 613 ER EDIPLL + F A + G+ I I + ++ L + WPGN+RE+E+++ERAV+ + Sbjct: 376 ERREDIPLLLQHFARNAAMKYGKPIRHIASGSVLALMDYTWPGNIREMEHMVERAVISSD 435 Query: 614 GNVLQLSLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLK 673 + +++P + + + E E Q I+R L+ +NG + GP+GAA L +K Sbjct: 436 EPQITIAVPGNRKALEADGNSLSPLLTLAETERQTIIRALRYSNGRIRGPQGAADLLDIK 495 Query: 674 RTTLLSRMKRLGIDKSALI 692 TTL +RMK+LGI K ++ Sbjct: 496 PTTLEARMKKLGIVKEHVV 514 >UniRef50_C9RBQ4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Ammonifex degensii KC4 RepID=C9RBQ4_AMMDK Length = 470 Score = 524 bits (1351), Expect = e-147, Method: Composition-based stats. Identities = 164/402 (40%), Positives = 218/402 (54%), Gaps = 19/402 (4%) Query: 301 CLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVA-IAVDNALAYQEIHRLKER 359 +P M G +L L+ V T + + + A + + + L Sbjct: 54 IRMPEMDGIKVLQALREKHPGVPVILMTAYSDTQTTINAMRYGAFEYIVKPINLDELLST 113 Query: 360 LVDENLALTEQL----NNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGK 415 L + + G +IG S AM V K + +A SD TVLI GE+GTGK Sbjct: 114 LEKATTVTEPLVTVGKGEIAPRPGTLIGCSPAMQEVYKTIGRIADSDVTVLIQGESGTGK 173 Query: 416 ELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKS 475 EL+A AIH S R + VK++C A+P LLES+LFGHE+GAFTGA +++G+FELAD Sbjct: 174 ELVAEAIHYNSPRQGKPFVKIDCTAIPENLLESELFGHEKGAFTGAHTRKLGKFELADGG 233 Query: 476 SLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFR 535 ++FLDE+GD+ LQ KLLR LQE+ FER+G + + DVR+IAATN+DL++ V FR Sbjct: 234 TVFLDEIGDISPALQAKLLRFLQEKAFERVGGTETRRVDVRIIAATNKDLEERVKSGLFR 293 Query: 536 SDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWP 595 DLYYRLNV I LPPLRER EDI LL F R+ G+ + + L WP Sbjct: 294 EDLYYRLNVVEIKLPPLRERKEDIMLLVDYFVSLSNRKFGKQVTGLTRSVADILLQYNWP 353 Query: 596 GNVRELENVIERAVLLTRGNVLQLS-LPDIVLPE----------PETPPAATVVALEGED 644 GNVREL NV ERAVL+ RGNV+ LP+ +L E + + E Sbjct: 354 GNVRELRNVCERAVLMARGNVITPESLPEYLLRAVRGRTEAWHPAEDRGVLPLKEMVAEM 413 Query: 645 EYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 E I+R L+E G A+ LG+ RTTL ++MK LGI Sbjct: 414 ERSAILRALEEYRG---NKTAVARALGMSRTTLYAKMKELGI 452 >UniRef50_B1Y713 Transcriptional regulator, NifA, Fis Family n=4 Tax=Burkholderiales RepID=B1Y713_LEPCP Length = 593 Score = 524 bits (1351), Expect = e-147, Method: Composition-based stats. Identities = 160/445 (35%), Positives = 236/445 (53%), Gaps = 13/445 (2%) Query: 181 CRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKN---KLNI 237 R + I + + LD+ + + + + IV+ ++ +L + Sbjct: 9 ERSHVELITIYEICRILGASLDIGRTFRASLNVLAAHLGLSRVMIVMAPDDRDGEARLRV 68 Query: 238 YSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQI 297 +S+ LD++ Q E + V+ S +++ + F +++ Sbjct: 69 HSSVGLDQEQERRGQWHYGEG--VIGHVYASGMPVVVPDVAQAAEFIDRTGAFGAQADRM 126 Query: 298 QTLCLLPLMSGDTMLGVLKLAQC-EEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRL 356 ++PL + ++GVL + V + + +L A +A A A + + Sbjct: 127 MAFVVVPLKTDRAVVGVLAAQREVSGGVRLSDDQRILTMAATLMAQA---ASLHGAVTEE 183 Query: 357 KERLVDENLALTEQLN---NVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGT 413 +RL E L + L ++G S M V +V A + +TVL+ GE+GT Sbjct: 184 HKRLQLETTRLQKALAPEPRGRYTLDNVVGVSRGMQQVFSEVHQAAPARATVLLRGESGT 243 Query: 414 GKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELAD 473 GKE IARA+H LS R + +K+NCAA+ LLES+LFGHERGAFTGA+ R GRFE A Sbjct: 244 GKEAIARALHYLSPRKDAPFIKVNCAALTESLLESELFGHERGAFTGAAGDRKGRFEQAH 303 Query: 474 KSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADRE 533 +LFLDEVGD+ Q KLLRVLQE+EFER+G N+ I+ DVRLI ATNRDL+KMV E Sbjct: 304 TGTLFLDEVGDISASFQAKLLRVLQEREFERVGGNRAIKVDVRLICATNRDLEKMVKRGE 363 Query: 534 FRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNME 593 +R+DLYYR+NV I LPPLRER +DIP L F + + R + I + + LS+ Sbjct: 364 YRADLYYRINVVSIFLPPLRERRDDIPALVSHFVDRFNKENRRKL-RIAGDAMEVLSHCY 422 Query: 594 WPGNVRELENVIERAVLLTRGNVLQ 618 WPGNVRELEN IER + G++++ Sbjct: 423 WPGNVRELENCIERTATMANGDLIR 447 Score = 42.5 bits (99), Expect = 0.063, Method: Composition-based stats. Identities = 8/45 (17%), Positives = 21/45 (46%), Gaps = 3/45 (6%) Query: 643 EDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 + E + ++ +++ V A AA+ L + L +++ I+ Sbjct: 548 DGERERLIWAMEQCAWVQA---KAARLLHVTPRQLGYALRKYNIE 589 >UniRef50_Q893M0 Putative sigma-54 interacting protein n=1 Tax=Clostridium tetani RepID=Q893M0_CLOTE Length = 595 Score = 523 bits (1348), Expect = e-147, Method: Composition-based stats. Identities = 145/325 (44%), Positives = 207/325 (63%), Gaps = 11/325 (3%) Query: 370 QLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRN 429 +LNN F E+IG+S +M + + +E VA + +++ GE+GTGKEL+ RA+H R Sbjct: 273 KLNNDKIGFKEMIGQSNSMKELYELIEKVADKNVNIMVTGESGTGKELVVRALHYGGERR 332 Query: 430 NRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLEL 489 + VK+NCAAMP +LES+LFGHE+GAFTGA +R+GRFELA K +LFLDE+GDM L + Sbjct: 333 DNPFVKVNCAAMPKDILESELFGHEKGAFTGADKKRVGRFELAHKGTLFLDEIGDMDLSI 392 Query: 490 QPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHL 549 Q K LR++Q+QEFER+G NK I+ DVR+I ATN+DLKK V + FR DLYYRLN +++ Sbjct: 393 QAKFLRIIQQQEFERVGGNKTIKVDVRIICATNKDLKKEVKEGRFREDLYYRLNTITLYV 452 Query: 550 PPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAV 609 PPLRER EDIP L F + ++ + I E L +WPGNVRELEN +ERA+ Sbjct: 453 PPLRERKEDIPFLIHHFLKEKGKKFDKIAPKISPEVFDALMEYDWPGNVRELENAMERAI 512 Query: 610 LLTRGNVLQL-SLP-DIVLPEPETPPAATVVALE------GEDEYQLIVRVLKETNGVVA 661 +L ++++L +LP IV E + V ++ E ++I+ L++ + Sbjct: 513 ILCGKDLIRLNNLPISIVKNNKEFDESKHVTPIDIKEITIRNMEREIIIEALEKCDW--- 569 Query: 662 GPKGAAQRLGLKRTTLLSRMKRLGI 686 ++ LG+ R TL ++MK I Sbjct: 570 NRTKTSKSLGISRRTLYNKMKEFNI 594 >UniRef50_A6EHC6 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Pedobacter sp. BAL39 RepID=A6EHC6_9SPHI Length = 646 Score = 523 bits (1347), Expect = e-146, Method: Composition-based stats. Identities = 173/506 (34%), Positives = 279/506 (55%), Gaps = 12/506 (2%) Query: 192 AITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHR--KNKLNIYSTHYLDKQHPA 249 + + V + E + ++A + D + + S R LN++ + + Sbjct: 138 QVEHIVGKQETTAEKIKQLASAMQSLLPYDFLWVTRSSRRGAAGDLNLFRYDSQHYKSYS 197 Query: 250 HEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQI-------QTLCL 302 E+ + D + + + + L+ + + + ++ + ++ ++ + Sbjct: 198 SEELQADMELSQRDFKLWNSKALVFDGKAIFNGYEFRKLRMENEWIKVLSDHFSLESALV 257 Query: 303 LPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVD 362 + L + + ++T + ++ Q + +A+ + + Y + Sbjct: 258 VELKCEEEPFQFI-FFSTIADLYTKVHQGIVNQFHKSLAL-IAQDIFYNKREISVAAAEP 315 Query: 363 ENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAI 422 + L E ++S+F IIG+S + V +++++VA D++VLILGE+GTGKE +A I Sbjct: 316 KPQPLKEVQVPLESDFHGIIGQSSLLKDVFRKIQLVAADDTSVLILGESGTGKERVAHTI 375 Query: 423 HNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEV 482 H LS R ++ MV +NCAA+P L+ES+LFGHE+GAFTGA+ +RIG+FE AD S+FLDE+ Sbjct: 376 HKLSPRKSKPMVTVNCAALPLTLIESELFGHEKGAFTGANDKRIGKFEQADGGSIFLDEI 435 Query: 483 GDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRL 542 G++PLE Q KLLRVLQE+E ERLG N + +VR+I ATNR+L+K VA+ FR DLYYRL Sbjct: 436 GELPLEAQVKLLRVLQEKEIERLGGNGTKKINVRIITATNRNLEKEVAEGRFRLDLYYRL 495 Query: 543 NVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELE 602 NVFPI LP LR+R EDIPLL+ F K ++ I + A ++ L +WPGN+RELE Sbjct: 496 NVFPIELPSLRQRKEDIPLLSHHFIKKYSKNASAQIGGVSAASMEELQQYDWPGNIRELE 555 Query: 603 NVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATV-VALEGEDEYQLIVRVLKETNGVVA 661 ++IER+VLL++ + + P + + E E I+ +LK G V Sbjct: 556 HLIERSVLLSKEEEITTIIVPTTTPSLAGSNSGEFRIKTMEEMERDHILSILKMCKGKVF 615 Query: 662 GPKGAAQRLGLKRTTLLSRMKRLGID 687 GP GAA+ L + TTL S++K+LGI Sbjct: 616 GPGGAAEILNMPSTTLNSKIKKLGIK 641 >UniRef50_Q2IEG0 Transcriptional regulator, Fis family / DNA-binding protein Fis n=1 Tax=Anaeromyxobacter dehalogenans 2CP-C RepID=Q2IEG0_ANADE Length = 520 Score = 523 bits (1347), Expect = e-146, Method: Composition-based stats. Identities = 178/510 (34%), Positives = 280/510 (54%), Gaps = 16/510 (3%) Query: 188 RILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQH 247 + +T + S LD+ + + V + +D++ + + + + + Q Sbjct: 5 QFFRELTLRICSTLDIQKAIERVFPVLRARVPLDELRLEVLDRKLGAVRQIARVSTAGQG 64 Query: 248 PAHEQSE------VDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLC 301 A E+ + L + +L++ +D+ RM+ + + Sbjct: 65 RAGERITQVKPAIIPLPARLWRWADAMRGPILMDEASGEDM----RMMRVLTKAEHDSDL 120 Query: 302 LLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLV 361 +PL T LG L L + +T + LL +A+ A+A+ NALA+QE+ ++++ L+ Sbjct: 121 AVPLRVESTQLGFLLLRAAGKGRYTAAHAELLATVADPCAVALANALAHQELVQVRDELL 180 Query: 362 DENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARA 421 D+ L +L + + E+IG S + SV++ V A +STVL+LGETG GK++IA Sbjct: 181 DDKRFLNRELFHATA--DEVIGGSTGLRSVMELVRQAAPLNSTVLLLGETGVGKDVIANV 238 Query: 422 IHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDE 481 +H+ S R +K+NC A+P GL++S++FGHE GAFTGA A GRFE AD ++FLDE Sbjct: 239 LHDASPRREGPFIKVNCGAIPEGLVDSEMFGHEAGAFTGARAAHRGRFERADGGTIFLDE 298 Query: 482 VGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYR 541 +GD+P Q +LLRVLQ +E ER+G + ++ D+R+IAAT+++L++MV + FR DL++R Sbjct: 299 IGDLPKGAQVRLLRVLQSREIERVGGTRPLKVDIRVIAATHQNLQQMVTEGRFREDLFFR 358 Query: 542 LNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLG-RNIDSIPAETLRTLSNMEWPGNVRE 600 LNV PI++PPLR R EDIP L + F R LG R +I L L WPGNVRE Sbjct: 359 LNVLPINIPPLRLRAEDIPALVRHFVAVKRRGLGIRGTPTISPGALARLQAYAWPGNVRE 418 Query: 601 LENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALE---GEDEYQLIVRVLKETN 657 LENV+ER ++ + G +LS ++ + + P+ + I VL T Sbjct: 419 LENVVERELVRSAGRGRELSFEELARSQARSAPSRHEAPPPRTLADVMAAHIEDVLAATG 478 Query: 658 GVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 G + GP GAA+ LG+ +TL +RM RLGI Sbjct: 479 GKIHGPGGAAELLGVNESTLRNRMNRLGIT 508 >UniRef50_C7PBZ0 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Sphingobacteriales RepID=C7PBZ0_CHIPD Length = 481 Score = 522 bits (1345), Expect = e-146, Method: Composition-based stats. Identities = 163/326 (50%), Positives = 219/326 (67%), Gaps = 1/326 (0%) Query: 366 ALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNL 425 + +++ F IIG S M V + + VA D++VL+LGETGTGKE +A IH+L Sbjct: 154 EVKKEVVPPIPNFEGIIGSSIPMQRVFELIRQVAPLDTSVLVLGETGTGKEGVANCIHHL 213 Query: 426 SGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDM 485 S R + VK+NCAA+P L+ES+LFGHE+GAFTGA +RIG+FE AD ++FLDE+GDM Sbjct: 214 SPRKAKPFVKVNCAALPTHLIESELFGHEKGAFTGALEKRIGKFERADGGTIFLDEIGDM 273 Query: 486 PLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVF 545 P +LQ KLLRVLQE+E ER+G N I+ +VR+IAATNR+L+K +A+ FR DLYYRL+VF Sbjct: 274 PADLQVKLLRVLQEKEIERIGGNGPIKVNVRIIAATNRNLEKEIAEGRFRLDLYYRLHVF 333 Query: 546 PIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVI 605 PI L LRER +DIPLL F A G+ + I LR L + WPGNVREL+N+I Sbjct: 334 PIMLSALRERRDDIPLLIAHFIRLYASATGKGVSDIAPAALRQLMDYAWPGNVRELQNLI 393 Query: 606 ERAVLLTRGNVL-QLSLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPK 664 ER+VLL+R +++ ++ LP V E T + E E + I+ VLK+ N ++GP Sbjct: 394 ERSVLLSRESIIREVILPVSVKKETTVVSTETDIKTIVELEREHILTVLKKCNHKISGPG 453 Query: 665 GAAQRLGLKRTTLLSRMKRLGIDKSA 690 GAA+ L L +TL S+MK+LGI K Sbjct: 454 GAAELLNLPPSTLASKMKKLGIVKRH 479 >UniRef50_A4J443 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Peptococcaceae RepID=A4J443_DESRM Length = 455 Score = 522 bits (1345), Expect = e-146, Method: Composition-based stats. Identities = 154/416 (37%), Positives = 234/416 (56%), Gaps = 17/416 (4%) Query: 289 LFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIA----V 344 L + + T +P G +L +K A V T + + + + Sbjct: 43 LMQFKPDVLITDIRMPEKDGFGLLEQIKSAGLNIPVILMTAFGTTEVAIKAMKLGAFDYI 102 Query: 345 DNALAYQEIHRLKERLVDEN---LALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQS 401 E L +R V ++ + S IIG S +M +V K + VA S Sbjct: 103 VKPFDLDEFLDLIQRAVAQSDTVATFPQAQEPASSTGINIIGNSPSMRNVYKDIGRVADS 162 Query: 402 DSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGA 461 ++TVLI GE+GTGKEL+ARAIH S R N +K+NCA +P LLES+LFG+E+GAFTGA Sbjct: 163 NATVLIQGESGTGKELVARAIHYNSSRRNNPFIKVNCANLPDSLLESELFGYEKGAFTGA 222 Query: 462 SAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAAT 521 S+ ++GRFELA + ++F DE+G++ L Q KLLR +QE+EF+R+G K I+ +VR++AAT Sbjct: 223 SSLKVGRFELAHEGTIFFDEIGEISLATQAKLLRAIQEKEFDRVGGTKTIKVNVRILAAT 282 Query: 522 NRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSI 581 NR LK+ V + EFR DL++RLNV I +PPLR+R EDIPLL F K + + I Sbjct: 283 NRKLKQSVREGEFREDLFFRLNVVNIEIPPLRDRKEDIPLLIAHFLAKYNKEFNKEIKGF 342 Query: 582 PAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETP-------PA 634 E ++ L +WPGNVRELENV+ER++++ RG ++ + + P Sbjct: 343 SKEAIKLLIGYDWPGNVRELENVVERSIIMARGAIIVPEDIQLGATVSQQPTELEILDEN 402 Query: 635 ATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSA 690 ++ + + E ++I++ L+E N A+ L + R +L ++MK LGI+++ Sbjct: 403 LSLKQIISDVERKVILKALEENNWC---RTTVAKVLKINRRSLYAKMKELGIEENG 455 >UniRef50_D0LWE6 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LWE6_HALO1 Length = 684 Score = 521 bits (1343), Expect = e-146, Method: Composition-based stats. Identities = 177/515 (34%), Positives = 270/515 (52%), Gaps = 25/515 (4%) Query: 187 FRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQ 246 ++ L ++ + +D +V + + ++ + + + + T Sbjct: 180 YKALQPLSARLDLSATIDAVVCATFELLPQVTNVAVLMRSEVDKDRFTVAVSQTRDGSGH 239 Query: 247 HPAHEQSE-------VDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQT 299 A +S V + ++ RV S+ +I + +++LA E +L G +I + Sbjct: 240 GEARGESRGDGRPAEVRASRSVLRRVL-SERAAVITANAQEELASSESIL----GGKILS 294 Query: 300 LCLLPLMSGDTMLGVLKLA-QCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKE 358 + +PL GD + G+++ + + + +L + + + A+A+DNA + +E Sbjct: 295 MVAVPLWRGDEITGLIQADNRASAGMLSERDLEVALLLGAQAALAIDNAALVSRLKVAEE 354 Query: 359 RLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELI 418 RL EN L + N+ F IIG S AM ++ Q+ V + +TV I GETGTGKELI Sbjct: 355 RLRGENTYLKRREENL--RFENIIGESSAMQAIFDQLRKVVDTRATVCIEGETGTGKELI 412 Query: 419 ARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLF 478 A AIH S R ++ V NCAA+P LLES+LFGH++GAFT A + G FE+AD +LF Sbjct: 413 ATAIHYESNRRDKMFVAQNCAALPENLLESELFGHKKGAFTSADTDKKGLFEIADGGTLF 472 Query: 479 LDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDL 538 LDE+G+MPL LQ K+LRVLQE LGS + Q D R+I ATNRDL V FR DL Sbjct: 473 LDEIGEMPLSLQAKVLRVLQEGTIRPLGSTRERQVDARIICATNRDLAAEVEKGSFRQDL 532 Query: 539 YYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNV 598 YYRL VFPI LPPLRER EDIP L + F + +R + + E L +S +WPGN+ Sbjct: 533 YYRLVVFPIRLPPLRERREDIPPLCEHFLKRYSREFRQEVLGFSQECLDVMSTYQWPGNI 592 Query: 599 RELENVIERAVLLTR-GNVLQLSLPDIVLPEPE------TPPAATVVALEGEDEYQLIVR 651 RELEN ++R V+ T G+ +++S L + E P T+ A+ + E L+ Sbjct: 593 RELENEVQRLVIQTDAGSWIEVSELSPRLRKVEGTLARIAPKKGTLKAMMEQVERWLLAE 652 Query: 652 VLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 L+E + AQ LG+ R L ++ + + Sbjct: 653 ALREHDN---NKTRTAQSLGITREGLHKKLSKYSM 684 >UniRef50_B8FCN8 Transcriptional regulator, NifA subfamily, Fis Family n=2 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FCN8_DESAA Length = 529 Score = 521 bits (1343), Expect = e-146, Method: Composition-based stats. Identities = 168/493 (34%), Positives = 265/493 (53%), Gaps = 8/493 (1%) Query: 197 VLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQHPAHEQSEVD 256 + S L++++ + + + +S+ L + + K ++ + Sbjct: 16 ICSSLEVEKALWHSLLYVREHIPASQMSLHLYNPVTGIAETVAQATPGKYGRLSVKTHLS 75 Query: 257 EAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLK 316 E R +++ + R P + +G +Q+ +L L+ ++GVL Sbjct: 76 EK---ARRQVEAQRSQRLRRVNRVSDDPVAEEVSRYFGGAVQSALILDLVIEGRLIGVLT 132 Query: 317 LAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDS 376 L K +T + L R + E A+A+ N++ +E+++LKE L D+N E N Sbjct: 133 LHGEVGKTYTARHEQLFRLLNEPFAVALSNSMRQRELNKLKELLTDDNPYFQE--NEEAF 190 Query: 377 EFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKM 436 E++G + V++ VA +S VL+LGETG GKELIA A+H S R N ++K+ Sbjct: 191 SENEVVGADYGLRGVMEMARQVAPLESPVLLLGETGVGKELIASAVHRASPRRNGPLIKV 250 Query: 437 NCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRV 496 NC A+P L++S+LFGHE+GAFTGAS+ + GRFE AD+ ++FLDEV ++ E Q +LLRV Sbjct: 251 NCGAIPDTLIDSELFGHEKGAFTGASSMKRGRFERADEGTIFLDEVAELSPEAQVRLLRV 310 Query: 497 LQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERP 556 LQE+E ER+G+ + D+R+IAAT+R+L +V+ FR DL +RL VFPI +PPLR+R Sbjct: 311 LQEKEIERVGAAETTHVDIRVIAATHRNLDGLVSMGRFRQDLLFRLKVFPIVIPPLRDRK 370 Query: 557 EDIPLLAKAFTFKIARRLGR-NIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGN 615 DIP L + F + + I + + L + WPGNVRELEN +ERA++L+ G Sbjct: 371 GDIPSLVQHFVRIKSLDMKLGTIPPLAPGAMDKLMDYSWPGNVRELENAVERALILSGGK 430 Query: 616 VLQLSLPDIVLPEPETPPAATVVALEGEDE--YQLIVRVLKETNGVVAGPKGAAQRLGLK 673 D+ L ++L D+ L+ + L G V G GAA+ LG+ Sbjct: 431 KPVFQEFDLGLKPGPKTKNVESLSLPTMDQAMADLMRKALVLAKGRVEGKGGAAEILGMH 490 Query: 674 RTTLLSRMKRLGI 686 TL +RMK+LG+ Sbjct: 491 PMTLRNRMKKLGV 503 >UniRef50_Q1D574 Sigma-54 dependent transcriptional regulator, Fis family n=7 Tax=Myxococcales RepID=Q1D574_MYXXD Length = 630 Score = 521 bits (1342), Expect = e-146, Method: Composition-based stats. Identities = 160/511 (31%), Positives = 265/511 (51%), Gaps = 22/511 (4%) Query: 182 RERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTH 241 RE R L A + +L D++ L+ + E D ++L + ++ + Sbjct: 128 RELLLLRRLTAFSERLLGLYDLERLLEGLMDEAIEVTRADKGFLILMENGDPRVKV--AR 185 Query: 242 YLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLI-NLHERDDLAPYERMLFDTWGNQIQTL 300 + +++ + + ++ +V K ++ L++ + + + E ++ ++ ++ Sbjct: 186 NVSRENIEDAVEKDKISDSIIAKVVKEQKALIVADALDSPEFNKSESVV----NLRVHSV 241 Query: 301 CLLPLMSGDTMLGVLKLAQCE-EKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKER 359 +PLM + GVL + F + ++L A + ++ + NA+ ++ Sbjct: 242 MCVPLMQKGDLFGVLYVGNDRLVNRFEPKSADMLTIFAAQASLILQNAMLVSDLKL---- 297 Query: 360 LVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIA 419 +N L +L D +G+I+G + M V K+++ +A +D +VLI GETGTGKELIA Sbjct: 298 ---DNTELRRKLE--DQRYGDIVGACQGMRDVYKRIDKIAPTDISVLITGETGTGKELIA 352 Query: 420 RAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFL 479 R IH S R + +NC A+P LLES+LFGH +GAFTGA A + G+F+ A +LFL Sbjct: 353 REIHRRSTRAKGPFITINCGAIPENLLESELFGHVKGAFTGAVATKAGKFQAAIGGTLFL 412 Query: 480 DEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLY 539 DE+G+MPL+LQ KLLR LQE+ ++G N+ D+R++AATN+ L+ V FR DLY Sbjct: 413 DEIGEMPLQLQVKLLRALQEKVVYKVGDNRGEPVDIRVVAATNKVLEDEVKKNTFREDLY 472 Query: 540 YRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVR 599 YRLNV + LPPLRER ED+ +L + F K AR ++ WPGN+R Sbjct: 473 YRLNVVTLKLPPLRERGEDVVVLGRFFLQKYAREFSSKARGFTPSATVSMRKYGWPGNIR 532 Query: 600 ELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGV 659 ELEN +++AV+L +L D+ L P ++ + E + + I VL NG Sbjct: 533 ELENRLKKAVVLADKPLLGPD--DLDLKPENLEPIMPLLQAKEEFQKRYINEVLARNNG- 589 Query: 660 VAGPKGAAQRLGLKRTTLLSRMKRLGIDKSA 690 A+ LG+ T+ +++L +KS Sbjct: 590 --NRTKTAKDLGVDPRTIFRHLEKLEAEKSG 618 >UniRef50_C8WZC4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8WZC4_DESRD Length = 448 Score = 520 bits (1341), Expect = e-146, Method: Composition-based stats. Identities = 165/463 (35%), Positives = 252/463 (54%), Gaps = 21/463 (4%) Query: 224 SIVLRSHRKNKLNIYSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLA 283 I+L N L + S +L K+ +E + + + + +LI + D+ Sbjct: 6 RILLIDDEPNTLKVLSA-FLTKE--GYEVGTAKDGRSGLNHLQEGGWDMLITDLKLPDIT 62 Query: 284 PYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIA 343 + + + L ++ + + ++ ++ + + T ++ + + + Sbjct: 63 GLD--ILEQVKATWPKLPVVMITAYGSISNAVQAMKLGAFNYLTKPVDP-----DELLLL 115 Query: 344 VDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDS 403 V N + +L++EN + QL + G ++G+S+AM + +E VAQ ++ Sbjct: 116 VQNVFE-------RSQLLEENQTMRRQLRD-RYSLGNMVGKSKAMQELFNLIEKVAQYEA 167 Query: 404 TVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASA 463 VL+ GETGTGKEL+AR IH N V ++CAA+P LLES+LFGH RGAFTGA+ Sbjct: 168 NVLVTGETGTGKELVARGIHYAGQEENLPFVPIDCAAVPETLLESELFGHSRGAFTGAAE 227 Query: 464 QRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNR 523 Q+ G+ ELA +LFLDE+G++PL LQ K LR LQE+E RLG + + DVR+IAATNR Sbjct: 228 QKKGQIELAHGGTLFLDEIGELPLALQKKFLRFLQEKEIVRLGETRRRKVDVRIIAATNR 287 Query: 524 DLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPA 583 DL+ +A ++R DL+YRLNV I +PPLRER +DIP L F K + G+ I + Sbjct: 288 DLEAEIAAGQWREDLFYRLNVISIEIPPLRERRDDIPPLVNHFLAKYNAQNGKAIQGMTG 347 Query: 584 ETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGE 643 E + +WPGNVRELENVIERAV+L G+ + +S L E P +T E Sbjct: 348 EVMEVFMAYDWPGNVRELENVIERAVVLCMGDSIAMSCLPPKLQERSAPAPSTDGVNLME 407 Query: 644 DEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 E +LIV+ L++T AA+ LG+ R L ++MK G+ Sbjct: 408 MEKRLIVQTLEKTE---QNQSAAARELGISRKQLRTKMKHHGL 447 >UniRef50_Q2LRC8 Transcriptional regulator containing sigma 54 interaction domain n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LRC8_SYNAS Length = 697 Score = 520 bits (1341), Expect = e-146, Method: Composition-based stats. Identities = 187/509 (36%), Positives = 283/509 (55%), Gaps = 26/509 (5%) Query: 186 NFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYST----- 240 R+L I L R + + E + ++ + + + + Sbjct: 210 RLRLLGEIFVNALERSRAWKALQESEERLNLATVAAGAGLWILDTNTGQFWVTQMLRKLF 269 Query: 241 HYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTL 300 ++L + + E+ E + V +E++ +L ++DL R+L + Sbjct: 270 NFLPGEELSFERYEKTIHPDDRKGV---RELVQRSLKTQNDLTIEYRILKPDGN-----V 321 Query: 301 CLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERL 360 C +M+ G + + I ER + + EI++LK +L Sbjct: 322 CW--IMTRGRPYG-------GATGIPLRLMGICMDITERKEMENELRKQLAEINKLKLQL 372 Query: 361 VDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIAR 420 EN+ L ++ + FG IIG S+ + VL +V+ VA +D+TVLILGETG GK ++A Sbjct: 373 EKENIYLRNEI-KTERGFGGIIGHSDTLRYVLFRVQQVAPTDATVLILGETGVGKGMVAH 431 Query: 421 AIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLD 480 AIH +S R ++ MV +NCAA+P+ L+ES+LFG E+GAFTGA A++ GRFE+AD ++FLD Sbjct: 432 AIHEMSARKDKTMVTVNCAALPSNLIESELFGREKGAFTGAYARQAGRFEVADGGTIFLD 491 Query: 481 EVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYY 540 E+G++PLELQ KLLRVLQ+ EFERLGS + ++ DVR+IA+T+RDLK + + FR DLYY Sbjct: 492 EIGELPLELQTKLLRVLQDGEFERLGSPRTVKVDVRVIASTSRDLKVEMHNGRFREDLYY 551 Query: 541 RLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRE 600 RLN FP+ LPPLR R EDIP LA+ F K +R+L + +S+ +T++ L WPGNVRE Sbjct: 552 RLNTFPVTLPPLRMRVEDIPELARHFIDKYSRKLNKQFESLSKDTMQMLQAYAWPGNVRE 611 Query: 601 LENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVV 660 LE+VIER V+ + V Q L + + P + E + I++VL +T + Sbjct: 612 LEHVIERGVITSPEPVFQ--LVEQLEQGPGMEADKPIKGFETMA-REHILQVLHKTGWKI 668 Query: 661 AGPKGAAQRLGLKRTTLLSRMKRLGIDKS 689 G GAA LGL +TL R+K+LGI + Sbjct: 669 EGKGGAAAILGLNPSTLRFRLKKLGIKRP 697 >UniRef50_Q1D6H5 Sigma-54 dependent DNA-binding response regulator n=7 Tax=Myxococcales RepID=Q1D6H5_MYXXD Length = 474 Score = 519 bits (1338), Expect = e-145, Method: Composition-based stats. Identities = 162/415 (39%), Positives = 229/415 (55%), Gaps = 28/415 (6%) Query: 297 IQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIA----VDNALAYQE 352 + T ++P + G +LG ++ A + V T + + + + E Sbjct: 49 VVTDLVMPKVGGMEVLGTIRAANPDVPVIIITAHGTVDSAVDAIKAGAFDYITKPFDQAE 108 Query: 353 IHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETG 412 + + + N + + IIG S + V K ++ VA + STVLI GE+G Sbjct: 109 LSSVVAKAAKTNESARRSVRPDVKARAAIIGDSSTIQEVYKIIDKVADTPSTVLITGESG 168 Query: 413 TGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELA 472 TGKELIA A+H S R ++ +K+NCAA+P LLES+LFG+ERGAFTGA + GRFELA Sbjct: 169 TGKELIATALHGASSRRDKPFIKINCAAIPHTLLESELFGYERGAFTGAVTSKPGRFELA 228 Query: 473 DKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADR 532 D+ +LFLDE+G++P+E+Q KLLR +QE EFER+G K + DVRL+AATNRDL+ + Sbjct: 229 DEGTLFLDEIGEIPVEMQVKLLRAIQEGEFERVGGIKTTRVDVRLVAATNRDLQAEIEAG 288 Query: 533 EFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNM 592 FR DLYYRL V PI LP LRER D+P+LA+ F K RRL + I+ I + + L Sbjct: 289 RFRKDLYYRLAVVPISLPALRERRSDVPMLARHFVEKYNRRLNKKIEGIADDAMALLQGY 348 Query: 593 EWPGNVRELENVIERAVLLTRGNVLQL-SLPDIVLPEPETPPAATVVAL----------- 640 WPGN+RELEN+IER +L G ++ LP+ V A + + Sbjct: 349 AWPGNIRELENLIERVLLFADGPLITARDLPEPVRQGTGVQAGANLASAVASIDVPTGEV 408 Query: 641 ---------EGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 E E LIV+ L+ET G V AA+ L + R +L ++MK G+ Sbjct: 409 GLKDIVRMKAAELERDLIVKKLEETGGNV---TRAARLLQISRKSLQTKMKEFGL 460 >UniRef50_D2QRC3 Sigma 54 interacting domain protein n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QRC3_9SPHI Length = 657 Score = 519 bits (1338), Expect = e-145, Method: Composition-based stats. Identities = 179/569 (31%), Positives = 287/569 (50%), Gaps = 37/569 (6%) Query: 143 RPWSEKEFNRLQTFTQIVSVVTEQIQSRVVNNVDYELLCRERDNFRILVAITNAVLSRLD 202 +P+ EK+ +++ + +R+ + + E L + L+ I+ + L+ Sbjct: 103 KPFREKDL----LVALDIALYLHK--NRLESKLRQEALLERQ-----LLEISQ---NALN 148 Query: 203 MDELVSEVAKEIHYYFDID------DISIVLRSHRKNKLNIYSTHYL---DKQHPAHEQS 253 + ++A+ I D R L + Y + Sbjct: 149 AKQTFLQIARAIRTVIPFDLIVCGTRPFTASRFGDYGYLRVGLDDYQFIGRDELLTISGL 208 Query: 254 EVDEAGTLTERVFKSKEMLLINLHERDD---LAPYERMLFDTWGNQIQTLCLLPLMSGDT 310 + D + E + N + D L P +++ + +++ + P+ D Sbjct: 209 KSDALSNIIENSHTDTHVATYNNNATTDVVHLTPLQKLWLTIYN--LESYLVFPVALSDG 266 Query: 311 MLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQ 370 +++T ++L +L + A + + RL + Q Sbjct: 267 SWVHYTFYSRRREMYTQSHLAMLTGFISSLTKATEKLVQSDLSSTYTTRLSVDRKHDRAQ 326 Query: 371 LNNVD-SEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRN 429 + +F IIG + + L V VA +++VLILGE+GTGKE IA+AIH+LS R Sbjct: 327 DSQGSVPKFKGIIGNHPLLLAALDLVTQVAPYNTSVLILGESGTGKESIAQAIHSLSVRK 386 Query: 430 NRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLEL 489 +K+NCAA+PA L+ES+LFGHE+GAFTGA +R G+FE + + +LFLDE+G+MPL++ Sbjct: 387 TGPFIKVNCAAIPAALIESELFGHEKGAFTGAIEKRKGKFEQSHEGTLFLDEIGEMPLDM 446 Query: 490 QPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHL 549 Q +LLRVLQE+E + +G + DVR++AATNR+L++ VA+ FR DLYYRLNVFPI L Sbjct: 447 QVRLLRVLQEKEIDPVGGKSPKKVDVRVVAATNRNLEREVAEGRFRLDLYYRLNVFPITL 506 Query: 550 PPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAV 609 PPLRER DI L+ + + ++ + I A + L WPGN+RELENV+ER+V Sbjct: 507 PPLRERKSDIQALSVYVANRFCKEFSKDFNGISAGMMDELEGYTWPGNIRELENVLERSV 566 Query: 610 LLTRGNVLQLSLPDIVLPEPETPPAATVVALEG-------EDEYQLIVRVLKETNGVVAG 662 +L G +L L +L + P+ + G E E + ++ VLK T G++ G Sbjct: 567 ILNDGQS-ELELKQSLLGTTDKVPSKVAIETLGDVRRIQRETEREYLISVLKNTKGLIRG 625 Query: 663 PKGAAQRLGLKRTTLLSRMKRLGIDKSAL 691 GAA+ L +K TTL +R+ +LGI + L Sbjct: 626 ANGAAELLHIKPTTLEARLAKLGIQREDL 654 >UniRef50_C1ZB08 Sigma-54 interacting regulator n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZB08_PLALI Length = 1098 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 168/494 (34%), Positives = 257/494 (52%), Gaps = 29/494 (5%) Query: 167 IQSRVVNNVDYELLCRERDNF-RILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISI 225 V + RE+ ++L + AV D + L +A + +I Sbjct: 459 WARDVWQRLVDRRFFREKYQLDKVLQRMNRAVGQLADAESLAQRMAGSCQDVIQAERAAI 518 Query: 226 VLRSHRKNKLNIYSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPY 285 LR R + + + + D TL + + + RD + P Sbjct: 519 YLREGRSTNFRLIAAEGVWPNVSMQISTSADFVMTLA----AATTLQAVPAASRDSMNPV 574 Query: 286 ERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVD 345 + L D I L + +SG +LG + V++ ++ L + + +A+ Sbjct: 575 QSFLRDLQAELIHALEVEGELSGFVVLG----PRQTNGVYSAEDITFLTAMGQITGVALH 630 Query: 346 NALAYQEIHRLKERLV----------DENLALTEQLNN----------VDSEFGEIIGRS 385 A ++++ RL E L + L L ++N + G I G S Sbjct: 631 CAKVHKDLSRLNEELRLKVDRIEQQKQQILMLQAEINESQEPESPAPVTEFNRGMIRGSS 690 Query: 386 EAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGL 445 +A+ VL+ V A SDS+VLI GE+GTGKEL+A+AIH S R + +V ++CAA+ GL Sbjct: 691 QALMEVLEVVRKAAASDSSVLITGESGTGKELLAQAIHANSPRRDGPLVIVHCAALSTGL 750 Query: 446 LESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERL 505 LES+LFGH +G+FTGA A + GRFELA+ +LFLDE+G++PLE Q KLLRVLQ++ FER+ Sbjct: 751 LESELFGHVKGSFTGAYADKPGRFELANGGTLFLDEIGEIPLETQVKLLRVLQQRTFERV 810 Query: 506 GSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKA 565 GS++ ++ DVR++AAT+++L++ + D FR DLYYRLNV I LP LRER +D+ L + Sbjct: 811 GSSETLRCDVRVVAATHKNLEQAIRDSRFREDLYYRLNVVHIALPALRERKDDLYELFRH 870 Query: 566 FTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIV 625 F + A + G+ + I L L +WPGN+RELENVIERAV+L+ N + L+ Sbjct: 871 FLKQAANKTGKRVFRIDESALAALLAYQWPGNIRELENVIERAVVLSESNTVTLADLPPA 930 Query: 626 LPEPETPPAATVVA 639 L ET + + Sbjct: 931 LRRLETSAIRRMES 944 Score = 55.6 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 3/67 (4%) Query: 618 QLSLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTL 677 LS+ + V + +E QL+++ L++ G AA+ LGL R+T Sbjct: 1031 SLSVNESVWETASNETGRFASDMTESEERQLLIKALEQCQG---NKAEAARMLGLPRSTY 1087 Query: 678 LSRMKRL 684 S++K+ Sbjct: 1088 FSKLKKY 1094 >UniRef50_C8W392 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W392_DESAS Length = 459 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 163/409 (39%), Positives = 229/409 (55%), Gaps = 26/409 (6%) Query: 301 CLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIA----VDNALAYQEIHRL 356 LP G ++ LK E V T + + ++ L E+ Sbjct: 53 IRLPDADGIEVMDKLKQMGIEVPVILMTAFGTTEIAIQAMKQGAHDYLNKPLNLDELVLA 112 Query: 357 ------KERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGE 410 +RLV E L E+L+ IG+S M V K + V SD TVLI GE Sbjct: 113 VQKSIKMQRLVSEVAILREELDQETDSVDSFIGQSRHMQDVFKTIGKVVDSDITVLIQGE 172 Query: 411 TGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFE 470 +GTGKE++AR IH+ S R++R +K+NCA +P L+ES+LFGHE+G+FTGA +Q+ G+FE Sbjct: 173 SGTGKEVVARTIHSNSRRSSRPFIKINCATIPEQLMESELFGHEKGSFTGAVSQKAGKFE 232 Query: 471 LADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVA 530 +A +FLDE+G++PL Q KLLRVLQE+EFER+G K I+ DVR++AATNR+L+ MV Sbjct: 233 IAHNGIVFLDEIGELPLHTQAKLLRVLQEKEFERVGGTKSIEVDVRILAATNRNLEDMVQ 292 Query: 531 DREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLS 590 + +FR DLYYRLNV + LPPLRER EDI LL F K AR+ +NI I E + Sbjct: 293 EGKFREDLYYRLNVVNVKLPPLRERKEDISLLINYFVKKFARKYNKNISGISQEAMIFAE 352 Query: 591 NMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLP-------------EPETPPAATV 637 WPGNVRE++NV E+AV++ R +VL L ++ +T ++ Sbjct: 353 KYAWPGNVREIKNVCEQAVVMARNSVLMLDDMPLIGNGNGFLEFKNNAKISLDTNDKRSL 412 Query: 638 VALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 + E E Q+I++ L E N A+ LGL R +L ++MK + Sbjct: 413 KDIVAEVEKQVILKSLNENNWNRQN---TAKALGLNRRSLYAKMKEYDL 458 >UniRef50_A9EN62 Sigma-54 dependent transcriptional regulator n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9EN62_SORC5 Length = 648 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 170/528 (32%), Positives = 264/528 (50%), Gaps = 23/528 (4%) Query: 176 DYELLCRERDNFRILVAITNAVLSRLDMDELVSEVAK-EIHYYFDIDDISIVLRSHRKNK 234 + R+ + A + + D+DE+++E+A + +++VLR + Sbjct: 127 AEAKIERDPSALSAMYAAQKRIGAANDLDEVLAEIADAVLALVPSSTHVTVVLRDDDQ-- 184 Query: 235 LNIYSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYE-----RML 289 + +S + G V ++ + + ER + + Sbjct: 185 -EPGAAPAAFVPVLTRVRSASGKGGPPAGPVPITRSVYRKVIKERAAVLAADAPIEVGQS 243 Query: 290 FDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCE-EKVFTTTNLNLLRQIAERVAIAVDNAL 348 G I++ +PL G+ ++GVL+ + +L L +A ++AV NA Sbjct: 244 ESLMGASIRSTLAVPLWKGEEIIGVLQADNRSVPGMLNAGDLETLLVLAANASLAVANAR 303 Query: 349 AYQEIHRLKERLVDENLALTEQLNNVDSEFG---EIIGRSEAMYSVLKQVEMVAQSDSTV 405 + + +ERL EN L + G +IIG S+AM V+ Q++ V + TV Sbjct: 304 LIKRLVLAEERLQKENSFLKGREERRRGGGGGAVDIIGNSDAMRKVIGQLDKVVDTRVTV 363 Query: 406 LILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQR 465 LI GETGTGKELIA A+H S R ++ V NCAA+ LLES+LFGH++G+FTGA+ ++ Sbjct: 364 LIEGETGTGKELIAAAVHYRSRRRDKLFVAQNCAALAESLLESELFGHKKGSFTGATEEK 423 Query: 466 IGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDL 525 G FE+AD +LFLDE+ + PL LQ KLLR LQE E +G+ +VR++AATNR+L Sbjct: 424 KGLFEIADGGTLFLDEITETPLSLQSKLLRALQEGEIRPVGATSPKHVNVRIVAATNRNL 483 Query: 526 KKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAET 585 + VA FR DLYYRL VFPI LPPLRER +DI LLA F + A +G+ + Sbjct: 484 EDEVAKGRFREDLYYRLKVFPIRLPPLRERRDDISLLAAHFLERYADEIGKPCGGFSQQA 543 Query: 586 LRTLSNMEWPGNVRELENVIERAVL-LTRGNVLQLSLPDIVLPEPE------TPPAATVV 638 + + +WPGNVREL+N ++R V+ L G L + + E P ++ Sbjct: 544 MELMVAYDWPGNVRELQNEVQRIVIQLEPGAFGTPELLSPRIRQVEGLVARAGTPKGSLK 603 Query: 639 ALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 + E ++ L+ G AA+ LG+ R L ++++ GI Sbjct: 604 EMMDAVEKFFLLEALR---GHNNNKTNAAKSLGITREGLHKKLRQYGI 648 >UniRef50_B5YL21 Acetoacetate metabolism regulatory protein AtoC n=3 Tax=Bacteria RepID=B5YL21_THEYD Length = 446 Score = 518 bits (1336), Expect = e-145, Method: Composition-based stats. Identities = 153/387 (39%), Positives = 228/387 (58%), Gaps = 7/387 (1%) Query: 303 LPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAY---QEIHRLKER 359 LP M G +L LK + T + + E + + + L E+ + Sbjct: 55 LPGMDGIDLLRWLKHCEMSIPTVMLTAYGTIEKAVEAMKLGAYHYLIKPVDTELLLNVIK 114 Query: 360 LVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIA 419 E ++L +++ F EIIG+S+ + + ++MVA+S++ VLI GE+GTGKEL+A Sbjct: 115 EAIEKSKGIQKLEKIETPFPEIIGKSKTIQEIFYIMQMVAESNANVLITGESGTGKELVA 174 Query: 420 RAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFL 479 RAIH S R ++ + ++C +P LLES+LFGHE+GAFTGA+ ++ G ELA++ ++FL Sbjct: 175 RAIHKNSLRKSKPFIIVDCTTIPENLLESELFGHEKGAFTGATERKTGLIELANEGTVFL 234 Query: 480 DEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLY 539 DE+G++P+ LQ KLLR LQE+E +R+GS + I+ DVR+I+ATN+DL+K + + FR DLY Sbjct: 235 DEIGELPMLLQKKLLRFLQEKEIQRIGSTQRIKVDVRVISATNKDLEKAIKEGSFREDLY 294 Query: 540 YRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVR 599 +RLNV I+LPPLRER EDIPLL F K ++ + I + E + L N WPGN+R Sbjct: 295 WRLNVVRINLPPLRERKEDIPLLVNHFLNKFSKENNKPIPQLEPEVMNALINYYWPGNIR 354 Query: 600 ELENVIERAVLLTRGNVLQL-SLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNG 658 EL NVIERAV+L+ ++ + LP + E E LI++ L T Sbjct: 355 ELANVIERAVVLSPSGLISIKHLPRRIQENTGWTIIKENTFNLLEVEKALILKALNSTGW 414 Query: 659 VVAGPKGAAQRLGLKRTTLLSRMKRLG 685 AA+ LG+ R L ++MK G Sbjct: 415 ---NQTKAAEILGISRKQLRTKMKHHG 438 >UniRef50_B8IZ98 Transcriptional regulator, NifA subfamily, Fis Family n=2 Tax=Desulfovibrio RepID=B8IZ98_DESDA Length = 554 Score = 518 bits (1335), Expect = e-145, Method: Composition-based stats. Identities = 167/458 (36%), Positives = 243/458 (53%), Gaps = 17/458 (3%) Query: 243 LDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCL 302 L Q + + L ++ E ++ G I + Sbjct: 84 LWTQTEPSGFYRFPLGHRKVGAIAMTNRPLEVSHIEGNEDWIAAPEWIAAEG--IVSFAG 141 Query: 303 LPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVD 362 PL+ LGV+ + +LR +A+ +A A+ NA ++ + +R Sbjct: 142 QPLVCRGETLGVIAF--FSRDTLAQGAMEMLRMVADHIAYAITNARLFEITRSITQRREL 199 Query: 363 ENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAI 422 EN L E+L +F IIG+S A+ ++ +Q+ +V+++++TVLI G +GTGKEL+A + Sbjct: 200 ENAHLREELYEAR-QFTGIIGKSAAIKAIREQILVVSETEATVLIQGASGTGKELVAHEL 258 Query: 423 HNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEV 482 H S R N +K+NCAA+P L ES+ FGH +GAFTGA R+G F+LAD +LFLDE+ Sbjct: 259 HKNSKRKNNPFIKINCAAIPHHLFESEFFGHVKGAFTGAIHDRMGFFQLADGGTLFLDEI 318 Query: 483 GDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRL 542 ++PLELQ KLLRVLQE EF R+G K TD+RLIAATN+DLK + R FR DLYYRL Sbjct: 319 AEIPLELQGKLLRVLQEGEFRRVGEEKNRHTDIRLIAATNKDLKAAIRKRTFRDDLYYRL 378 Query: 543 NVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELE 602 VFP+ +P L+ER EDIPLL + F R+ GR + +P + L +WPGN+REL+ Sbjct: 379 QVFPLTVPTLKEREEDIPLLVRHFIRIFCRKNGRRVFDVPEAQMNRLRQYDWPGNIRELQ 438 Query: 603 NVIERAVL------------LTRGNVLQLSLPDIVLPEPETPPAATVVALEGEDEYQLIV 650 N +ER V+ L + L P + E + Sbjct: 439 NFVERMVITGRPEQALAYLALCEAASPEAEEAAPELCASFGIPKILTEKQMRQLEKDNMK 498 Query: 651 RVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDK 688 L+ TN ++ G +GAA LG+K TTL+SR+KR + + Sbjct: 499 AALERTNWLIYGNRGAAALLGMKPTTLISRLKRFDLYR 536 >UniRef50_Q311G4 DNA-binding protein Fis / transcriptional regulator, Fis family n=10 Tax=Desulfovibrionales RepID=Q311G4_DESDG Length = 576 Score = 518 bits (1334), Expect = e-145, Method: Composition-based stats. Identities = 156/530 (29%), Positives = 260/530 (49%), Gaps = 20/530 (3%) Query: 171 VVNNVDYELLCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSH 230 ++N ++ + + L I + + + + + + + +V+ Sbjct: 49 IMNQINTQDSRL-QPYLGTLQRIVSDMGPQRPFQSSLKSLLRTLAENHHFKRPHLVIFDP 107 Query: 231 RKNKLNIYSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLF 290 L + TH K E +T +VF S + +++ + + Sbjct: 108 ETQTLKLSLTHDPTKAQ----DVEYSPGVGVTGQVFSSGQPVIVPRMKDHPSFLNKAFGR 163 Query: 291 DTWGNQIQTLCLLPLMSGDT------MLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAV 344 +P++ ++G L + + + Q+ VA + Sbjct: 164 SEEELATLGFICVPVLGPGEEASPREVIGTLSVDTPITDLPSLEGQCRFLQV---VAGMI 220 Query: 345 DNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDST 404 N AY + +++ + + + + I+ S++M VL QV V S +T Sbjct: 221 ANQAAYLQEEMARQKHMMTQGLIGGDVAENTVQAANIVAASKSMRLVLNQVAQVGPSRAT 280 Query: 405 VLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQ 464 L+ GE+GTGKEL+A AIH S R + ++K+NCAA+P+ L+ES+LFG+++GAFTGA Sbjct: 281 ALLRGESGTGKELLAEAIHQASPRRDMPLIKLNCAALPSDLVESELFGYQKGAFTGAVQN 340 Query: 465 RIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRD 524 + G FELA K +LFLDE+G++ Q K+LR +QEQE +RLGS + I DVRLI AT++ Sbjct: 341 KKGLFELAHKGTLFLDEIGELSASAQAKVLRAIQEQEIQRLGSEQTISVDVRLICATHQH 400 Query: 525 LKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAE 584 L+++V FR DLYYR+NVFP+ +PPLRER EDI +A+ F + A ++I I Sbjct: 401 LEELVESGSFREDLYYRINVFPVFIPPLRERREDILPVAEHFLKEYAEEYQKSIKRISTP 460 Query: 585 TLRTLSNMEWPGNVRELENVIERAVLLTRGNVL-QLSLPDIVLPEPETPPAATVVALE-- 641 + L+ WPGN+REL+N IERAVL+ V+ +P + T +++ E Sbjct: 461 AIDLLTQYHWPGNIRELKNCIERAVLVCDEQVIRTYHMPPSLQTAESTATDSSLSFCEAV 520 Query: 642 GEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSAL 691 + E +L+V LK+ G + AA+ L + + ++K+ GID Sbjct: 521 AKFEQELLVDALKKARGNML---QAARDLRVSYRIVNYKVKKYGIDAKKF 567 >UniRef50_A9F816 Protein kinase n=12 Tax=Bacteria RepID=A9F816_SORC5 Length = 1673 Score = 517 bits (1333), Expect = e-145, Method: Composition-based stats. Identities = 177/527 (33%), Positives = 266/527 (50%), Gaps = 37/527 (7%) Query: 190 LVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVL-------RSHRKNKLNIYSTHY 242 L+ + + S LD +E++ + ++L H K +L + Sbjct: 1156 LLEVNRRLSSTLDAEEVLRLAMDAAIELTGAERGFVILASPSPEPGGHAKGRLEVAVARN 1215 Query: 243 LDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCL 302 LD++ Q + + +RV + E +L D+ G +++++ Sbjct: 1216 LDRERVGKSQLKFSHG--IAKRVVERGEAVLTVDALADERF---HGNASVHGLRLRSIVC 1270 Query: 303 LPLMSGDTMLGVLKLA-QCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLV 361 +P+ + +LG + L + + F + +LL A+++A+A+ N E+ L Sbjct: 1271 VPIRAHGAVLGAVYLDNRFQRGKFAEGDADLLGAFADQIAVALHNGRLMAELRDRTRALE 1330 Query: 362 DENLA------------------LTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDS 403 +E L + +F EI GRS M +VL E VA+SD Sbjct: 1331 EEQRRVAELMRSQADEIERLSHELERTRADARRDFPEIAGRSAPMRAVLALCERVAESDV 1390 Query: 404 TVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASA 463 TV + GE+GTGKEL+ARAIH R + V +NCAA+P LLES+LFGH +GAFTGA Sbjct: 1391 TVTVTGESGTGKELVARAIHAGGPRRDGPFVAVNCAALPEALLESELFGHVKGAFTGAVR 1450 Query: 464 QRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQT-DVRLIAATN 522 G F A +LFLDE+G++PL +Q KLLR LQE+ +GS++ + DVR++ ATN Sbjct: 1451 DHGGLFLSARGGTLFLDELGEVPLGVQAKLLRALQERSIRPVGSDRSVSVADVRVVCATN 1510 Query: 523 RDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIP 582 RDL+ VA FR DLYYR++V I LPPLR+RPEDIP +A+A K+A R GR + Sbjct: 1511 RDLRDEVARGRFREDLYYRVSVIEIRLPPLRDRPEDIPAIAQAIVEKLAARQGRPAFRLS 1570 Query: 583 AETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEG 642 LR LS+ WPGNVR+LENV+ RA +L+ G + + DI LP P A Sbjct: 1571 RGALRRLSSYGWPGNVRQLENVLSRACVLSPGPEIGAA--DIQLPAAAPAPRGRSRAEHQ 1628 Query: 643 EDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKS 689 E + I L + V+ ++ LG+ R TL ++ R G+ + Sbjct: 1629 GAEEERIRAALDLSRWNVS---EVSRSLGIPRMTLYRKLARYGLLRK 1672 >UniRef50_A4J616 Two component, sigma54 specific, transcriptional regulator, Fis family n=10 Tax=Bacteria RepID=A4J616_DESRM Length = 454 Score = 517 bits (1332), Expect = e-145, Method: Composition-based stats. Identities = 164/405 (40%), Positives = 238/405 (58%), Gaps = 29/405 (7%) Query: 303 LPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIA----VDNALAYQEIHRLKE 358 +P M G +L K + + T + E + + + E+ + Sbjct: 58 MPEMDGLEVLVKAKDLMPKLPIIMITAHGTIDTAIEAMKLGATDYITKPFDLDELKMVIR 117 Query: 359 R------LVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETG 412 + L +E L +LN ++G+I+G S+A++ V +E VA S++TVL+ GE+G Sbjct: 118 QALMVNHLQEEVTFLRSELNK---KYGQIVGNSQAIHDVCGLIEKVADSNATVLVTGESG 174 Query: 413 TGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELA 472 TGKE+ A +IH LS R ++ V +NCAA+P LLES+LFGHE+GAFTGA A+++GRFELA Sbjct: 175 TGKEITALSIHQLSSRRDKPFVPINCAALPESLLESELFGHEKGAFTGAVARKLGRFELA 234 Query: 473 DKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADR 532 ++ +LFLDE+ +MPL +Q KLLRVLQE+EFER+G I+ DVR+IAATNRD + + Sbjct: 235 NQGTLFLDEITEMPLSMQVKLLRVLQEKEFERVGGTDSIKIDVRVIAATNRDPMECIRKG 294 Query: 533 EFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNM 592 FR DL+YRLNV PIHLPPLRER EDIPLLA F K + E + L + Sbjct: 295 TFREDLFYRLNVLPIHLPPLRERTEDIPLLAMHFIKKFNPS---QEQRMSPEAMGLLISY 351 Query: 593 EWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALE----------G 642 EWPGN+REL+NVIER+++L +GN ++ + + + T L Sbjct: 352 EWPGNIRELQNVIERSIILAQGNEIKPHHLPKEIQKLDEVKNETTHGLIINFPDDGISFD 411 Query: 643 EDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 E E +LI++ L+++NG AAQ LG+ R+ LL R ++ + Sbjct: 412 EVEKELILKALEKSNG---NQTRAAQLLGITRSALLYRAQKYRLK 453 >UniRef50_A9ET26 Transcriptional regulator n=2 Tax=Myxococcales RepID=A9ET26_SORC5 Length = 648 Score = 517 bits (1332), Expect = e-145, Method: Composition-based stats. Identities = 162/522 (31%), Positives = 268/522 (51%), Gaps = 40/522 (7%) Query: 183 ERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHR----------- 231 E R L A + +++R +DEL+ + ++ D ++L Sbjct: 127 ELAGVRKLFAFSEKLINRRSVDELLEAMLDDVIELTHADKGFLLLLEGAEAAADTAVNGG 186 Query: 232 ---------KNKLNIYSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDL 282 KL + ++ + K+ + ++ +V S ++++ D Sbjct: 187 APAAPAAGGDRKLAVRASRNIRKEAITDAAG--GISDSIVRQVIVSGRPVIVSDALADTQ 244 Query: 283 APYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCE-EKVFTTTNLNLLRQIAERVA 341 + ++ ++ PL+S ++G L + + + +F L+LL A + + Sbjct: 245 FGRSDSVIAM---KLSSVMCAPLLSQGQIIGALYVGNDKIKHLFDRAQLDLLSIFASQAS 301 Query: 342 IAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQS 401 + + NA+ + K +LV E D +FGEIIG +M V ++++ VA + Sbjct: 302 LILQNAMLLNALRADKAKLVAELH---------DKKFGEIIGACPSMLEVFRKLQKVAAT 352 Query: 402 DSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGA 461 D +VLI GETGTGKELIAR +H S R+ V +NC A+P L+ES+LFGH +GAFTGA Sbjct: 353 DISVLITGETGTGKELIARELHRRSPRDGGPFVTINCGAIPENLIESELFGHVKGAFTGA 412 Query: 462 SAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAAT 521 A R G+F++ADK +LFLDE+G++PL LQ KLLR LQE+ R+G +K + D+R++AAT Sbjct: 413 IASRPGKFQIADKGTLFLDEIGELPLNLQVKLLRALQERVVFRVGDSKPEKVDIRIVAAT 472 Query: 522 NRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSI 581 NR+L++ + FR DLYYRLNV + LPPLRER +D+ ++AK K A LG + Sbjct: 473 NRNLEEEIRAGNFREDLYYRLNVVNLWLPPLRERGDDVLIIAKVLLSKYADELGSAVRGF 532 Query: 582 PAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALE 641 L + WPGN+R+LEN I++A++L +L + D+ L + + Sbjct: 533 SPAALSAIKKYPWPGNIRQLENRIKKALVLCDQALLAVE--DLDLGPGAETAIMPLEKAK 590 Query: 642 GEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKR 683 E + + ++ L+ NG A+ LG+ T+ +++ Sbjct: 591 EEFQRRYVLEALERNNG---NRTQTARDLGVDPRTIFRYLEK 629 >UniRef50_C0QMI0 Sigma-54 dependent two component transcriptional regulator n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QMI0_DESAH Length = 524 Score = 517 bits (1332), Expect = e-145, Method: Composition-based stats. Identities = 172/514 (33%), Positives = 278/514 (54%), Gaps = 18/514 (3%) Query: 185 DNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLD 244 D +T + L++D+ + E I + D + V+ + + L Sbjct: 3 DENVFFKNVTRLICGDLEIDKALKECLDYIRAFIPADAMGFVIYLPEQKMFETIARADLA 62 Query: 245 KQHPAHEQSEVDEAGTLTERVFKS--KEMLLINLHERDDLAPYERMLFDT-WGNQIQTLC 301 A +S A T + K+ + H D + + W + + + Sbjct: 63 G---ADTRSVKFPADTFYQNRMKTDFSAPRITVAHPGDPEDYTLKFIRQAGWMDGLSAIM 119 Query: 302 LLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLV 361 + +++G M G L + ++ + ++ L+ + E IA+ N L Y+++ LK RL+ Sbjct: 120 IEMVLTGKRM-GALPMISKKQIRYEKKHIRLISLLNEPFGIALTNCLRYRKVKELKNRLL 178 Query: 362 DENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARA 421 D+ L ++L +V+ + EI+G + V++ V VA +S VL+LGETG GKE+IA+A Sbjct: 179 DDKRYLEKELFHVNIQ--EIVGSDGGLKGVMESVAQVAALNSPVLLLGETGVGKEVIAKA 236 Query: 422 IHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDE 481 IH SGR + +K+NC A+P L++S+LFGHE+GAFTGA ++++GRFE A ++FLDE Sbjct: 237 IHMASGRRSGPFIKVNCGAIPESLIDSELFGHEKGAFTGALSRKLGRFERAHLGTIFLDE 296 Query: 482 VGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYR 541 +G++PL+ Q +LLRVL++ E ER+G ++ + D R++AATNRDL M+ +R+FR DLY+R Sbjct: 297 IGELPLDAQTRLLRVLEDMEIERVGGDETVSIDSRVLAATNRDLDAMIKNRQFREDLYFR 356 Query: 542 LNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRN-IDSIPAETLRTLSNMEWPGNVRE 600 L VFPI +PPLR+R DIP L F K A+ + I ++ +L L +WPGN+RE Sbjct: 357 LKVFPIEIPPLRDRKTDIPALVHYFMHKKAKEIAFPGIPALALNSLPILMAYDWPGNIRE 416 Query: 601 LENVIERAVLLTRGNVLQLSLP--------DIVLPEPETPPAATVVALEGEDEYQLIVRV 652 LEN +ERA++ RG L ++ P+ A ++ I + Sbjct: 417 LENAVERALITCRGMPLSFDDLATAIGPKKGMIAPKDTDVEATDGLSTLNAAAASHIRKA 476 Query: 653 LKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 L++ G V GP GAA L + TL +M+RLG+ Sbjct: 477 LQKCRGRVEGPHGAAVLLDVHPATLRQKMRRLGV 510 >UniRef50_B8GM58 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GM58_THISH Length = 509 Score = 517 bits (1331), Expect = e-145, Method: Composition-based stats. Identities = 198/517 (38%), Positives = 272/517 (52%), Gaps = 25/517 (4%) Query: 186 NFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDK 245 + +L AI N V + + + + + ++ + ++L Sbjct: 6 DHTVLQAIANGV-AAETGEAFFDALVQHLAGALNVQSAWVTEWHPEASRLR---ALSFWS 61 Query: 246 QHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPL 305 + E GT E V + ++++ +L P + D G + +PL Sbjct: 62 RGRFVPDYEYPIHGTPCEAVISGQRLVVVP-ERVVELYPDDP---DLPGQDAVSYMGMPL 117 Query: 306 MS-GDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDEN 364 T+LG L + T + R A + + + L DE Sbjct: 118 RDTDGTVLGNLAVLDSRPLEADATCQAVFGIFGARAAAELARLRRDRRLRALN----DEA 173 Query: 365 LALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHN 424 AL +L ++ F EI+G S A+ +L + VA S++TVLI GETGTGKELIARAIH Sbjct: 174 AALRAELGSLRG-FEEILGESAALRRLLADIGRVAPSEATVLITGETGTGKELIARAIHR 232 Query: 425 LSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGD 484 S R+ ++K+NCAA+ A L ES+ FGHE+GAFTGA+ +R GRF+LAD +LFLDEVG+ Sbjct: 233 HSRRSQGPLIKVNCAAITATLQESEFFGHEKGAFTGAAQRRDGRFKLADGGTLFLDEVGE 292 Query: 485 MPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNV 544 MPL+LQ KLLRVLQE EFE +GS + ++ DVR+IAAT+RDL +MV + FR DL YRLNV Sbjct: 293 MPLDLQAKLLRVLQEGEFEPVGSGRTVRVDVRVIAATHRDLTQMVREGGFREDLLYRLNV 352 Query: 545 FPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENV 604 FP+H PPLRER ED+ LLA+A ++AR+ G + + L WPGNVRELENV Sbjct: 353 FPLHAPPLRERGEDVVLLAEAIATRLARQEGATLAPLSPADRARLKAHPWPGNVRELENV 412 Query: 605 IERAVLLT----RGNVLQL--SLPDIVL----PEPETPPAATVVALEG-EDEYQLIVRVL 653 IERA + G VL L +LP + P P A A E + E I R L Sbjct: 413 IERAWITGTDTPDGRVLNLVRALPGSEVTPRTPGLAADPDAVFTAAEMLQMERSNIERAL 472 Query: 654 KETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSA 690 ++G GAA+ LGL TL SRMK LGI + Sbjct: 473 VSCQWKLSGVGGAARLLGLHPNTLASRMKSLGIRRPD 509 >UniRef50_P09133 Nif-specific regulatory protein n=18 Tax=Rhizobiales RepID=NIFA_AZOC5 Length = 615 Score = 516 bits (1329), Expect = e-144, Method: Composition-based stats. Identities = 163/566 (28%), Positives = 262/566 (46%), Gaps = 72/566 (12%) Query: 191 VAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQHPAH 250 I+ + + ++ ++ V + + I + + ++ +T + Sbjct: 57 YEISKILTAPRRLEVTLANVVNVLSSMLQMRHGMICILDSEGDP-DMVATTGWTPEMAGQ 115 Query: 251 EQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDT 310 ++ V + +++ ++ L++ D L LF + +P+ + Sbjct: 116 IRAHVPQKA--IDQIVATQMPLVVQDVTADPLFAGHEDLFGPPEEATVSFIGVPIKADHH 173 Query: 311 MLGVLKLAQ--CEEKVFT-TTNLNLLRQIAERVAIAV--------DNALAYQEIHRLKER 359 ++G L + + F ++ L +A V V D + HRL++ Sbjct: 174 VMGTLSIDRIWDGTARFRFDEDVRFLTMVANLVGQTVRLHKLVASDRDRLIAQTHRLEKA 233 Query: 360 LVDENLALTEQLNNV-DSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELI 418 L +E ++ + I+G S + ++ ++VA+S+STVL+ GE+GTGKEL Sbjct: 234 LREEKSGAEPEVAEAANGSAMGIVGDSPLVKRLIATAQVVARSNSTVLLRGESGTGKELF 293 Query: 419 ARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLF 478 ARAIH LS R + VK+NCAA+P +LES+LFGHE+GAFTGA R GRFELA +LF Sbjct: 294 ARAIHELSPRKGKPFVKVNCAALPESVLESELFGHEKGAFTGALNMRQGRFELAHGGTLF 353 Query: 479 LDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDL 538 LDE+G++ Q KLLRVLQE EFER+G N+ ++ DVRL+ ATN++L++ V+ EFR+DL Sbjct: 354 LDEIGEITPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVCATNKNLEEAVSKGEFRADL 413 Query: 539 YYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNV 598 YYR++V P+ LPPLRERP DIP LAK F + + ++ + A + L +PGNV Sbjct: 414 YYRIHVVPLILPPLRERPGDIPKLAKNFLDRFNKENKLHMM-LSAPAIDVLRRCYFPGNV 472 Query: 599 RELENVIERAVLLTRGNVLQLSL------------------PDIVLPE------------ 628 RELEN I R L V+ P V+P Sbjct: 473 RELENCIRRTATLAHDAVITPHDFACDSGQCLSAMLWKGSAPKPVMPHVPPAPTPLTPLS 532 Query: 629 ---------------------PETPPAATVVA--LEGEDEYQLIVRVLKETNGVVAGPKG 665 P T P + E + +++ ++ + V A Sbjct: 533 PAPLATAAPAAASPAPAADSLPVTCPGTEACPAVPPRQSEKEQLLQAMERSGWVQA---K 589 Query: 666 AAQRLGLKRTTLLSRMKRLGIDKSAL 691 AA+ L L + +++ ID Sbjct: 590 AARLLNLTPRQVGYALRKYDIDIKRF 615 >UniRef50_C0GUF2 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GUF2_9DELT Length = 554 Score = 515 bits (1328), Expect = e-144, Method: Composition-based stats. Identities = 170/502 (33%), Positives = 268/502 (53%), Gaps = 12/502 (2%) Query: 197 VLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQHPAHEQSEVD 256 + LD+ + + + I Y D ++I L D + + Sbjct: 55 ICGSLDLQKAMQNTLEFISSYIPADALNIGLIDPEPGVARSVVHISPDDWPESRSTVSMP 114 Query: 257 EA-GTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVL 315 + + R ++SK I + + ++ W + +L L +G+L Sbjct: 115 QNIVSKFTREWESKPGFRILNDISLEEPAVQELIRAFWPEDV-SLLRTDLALESRRMGLL 173 Query: 316 KLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVD 375 L + +T + ++ + + ++A+ NAL Y+E +LK L D N L +L+ + Sbjct: 174 LLVAEGKNRYTKEHARIMSSLNKPFSVALANALQYEEAIQLKNMLEDYNRDLRSELSGLS 233 Query: 376 SEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVK 435 ++ I+G + V++ V VA +S VL+ GETGTGKE+ A A+H S R++ +K Sbjct: 234 AD-NRIVGAEFGLRQVMRMVRQVAPLESPVLLQGETGTGKEIFANALHAASLRSDGPFIK 292 Query: 436 MNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLR 495 +NC +P L++S+LFGHE+GAFTGA ++ GRFE ADK ++FLDE+G++PL +Q KLLR Sbjct: 293 VNCGGLPESLVDSELFGHEKGAFTGAISRNRGRFERADKGTIFLDEIGELPLNIQAKLLR 352 Query: 496 VLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRER 555 VLQ+ E ER+G ++ I DVR+I+AT+R+L++MV EFR DL++RLNVFPI +PPLR+R Sbjct: 353 VLQQNEIERVGGSRTIPVDVRIISATHRNLEQMVQRGEFREDLWFRLNVFPIMIPPLRQR 412 Query: 556 PEDIPLLAKAFTFKIARRLG-RNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRG 614 P+D+P L + R + IP+ T+ L WPGNVREL+N++ER ++ Sbjct: 413 PQDLPALLDHLVSRKCREMKITREIRIPSGTMDRLKKRAWPGNVRELQNLVERTLIQAHA 472 Query: 615 N-----VLQLSLPDIVLPEPET---PPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGA 666 + VL L L ET T V E + I + L+ G + GP GA Sbjct: 473 DNPDSAVLNLDLAVSGQKSIETNLETSGNTQVLTFEEAAARHIKKALEVARGKITGPGGA 532 Query: 667 AQRLGLKRTTLLSRMKRLGIDK 688 A+ LGL +TL +M++L I Sbjct: 533 AEILGLNPSTLRGKMRKLNISP 554 >UniRef50_A9GA77 Protein kinase n=15 Tax=Bacteria RepID=A9GA77_SORC5 Length = 1739 Score = 515 bits (1327), Expect = e-144, Method: Composition-based stats. Identities = 169/525 (32%), Positives = 259/525 (49%), Gaps = 33/525 (6%) Query: 186 NFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDK 245 L+A+ + S +++ ++++ + + L +L + +D+ Sbjct: 1197 KLERLLAVFRRLNSSVEIADILAMAMDAAIDLTAAERGFL-LIEQPGGELRVAVARNVDR 1255 Query: 246 QHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPL 305 + + + ER ++E ++ + D P +++++ +P+ Sbjct: 1256 EKVGRSHLKFSYG--IAERAIATQEPVVTVDAQED---PRFHEHASVHAMRLRSVIAVPI 1310 Query: 306 MSGDTMLGVLKLA-QCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDEN 364 S D +LG L L + F +++LL A++VA+A+ NA ++ R L E Sbjct: 1311 RSPDGVLGALYLDNRFRRARFAPEDVDLLLAFADQVALALRNARLVDDLRRRTVELEAER 1370 Query: 365 LALTEQLNNV--------------------DSEFGEIIGRSEAMYSVLKQVEMVAQSDST 404 + E L ++G I+GR A+ +V ++ V + Sbjct: 1371 RRVEELLRGQAAEIDRLQEQVLVRQQALEHRYDYGAIVGRGPALRAVFATLDRVVDAPVN 1430 Query: 405 VLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQ 464 VL+ GE+GTGKEL+ARAIH R + + +NCAA+PA LLES+LFGH RGAFTGA Sbjct: 1431 VLVTGESGTGKELVARAIHFAGPRKSGPFMGINCAALPAALLESELFGHVRGAFTGADRD 1490 Query: 465 RIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRD 524 R G A +LFLDE+G+MPLE+Q KLLRVLQE+E +GS + ++ D RL+ ATNRD Sbjct: 1491 RTGLVVAARGGTLFLDELGEMPLEVQAKLLRVLQEREVRPVGSAEAVRVDFRLVCATNRD 1550 Query: 525 LKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAE 584 L A FR DLYYR+ V I LP LR+R ED+P LA F + A +LGR + E Sbjct: 1551 LLAEAARGRFREDLYYRVAVVQIRLPALRDRLEDLPELALHFVRRAAEQLGRPAPQLSHE 1610 Query: 585 TLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGED 644 LR L WPGNVRELENVI +AV+L G + D+ + D Sbjct: 1611 ALRRLGQHGWPGNVRELENVITKAVVLCDGRRIGPDDVDLPRAQ---EGGGRGAPRPPRD 1667 Query: 645 EYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKS 689 E ++ L+ T AA+ G+ R T +++RLGI++ Sbjct: 1668 ERAALLAALERTGW---NALQAAREAGMSRATFYRKLRRLGIERP 1709 >UniRef50_Q3A356 Two component, sigma54 specific, transcriptional regulator, Fis family n=11 Tax=Desulfuromonadales RepID=Q3A356_PELCD Length = 471 Score = 514 bits (1325), Expect = e-144, Method: Composition-based stats. Identities = 179/414 (43%), Positives = 233/414 (56%), Gaps = 29/414 (7%) Query: 297 IQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIA----VDNALAYQE 352 I T LP +SG +L +K V T E + + L +++ Sbjct: 63 ILTDLFLPGVSGIEILKRVKEQWPFTNVILITGKGSAESAVEAMKEGAFDYITKPLHFEK 122 Query: 353 IHRL------KERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVL 406 + + K RLV ENL L +QL F IIG S M V ++E V +DST+L Sbjct: 123 LQVIIAKAVEKSRLVAENLYLRQQLRG-KYRFDNIIGNSLPMQYVFSRMEKVLNTDSTIL 181 Query: 407 ILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRI 466 ILGE+GTGKEL+A+AIH R + V +NC A+PA LLES+LFGH RGAFTGA A + Sbjct: 182 ILGESGTGKELVAKAIHYNGHRREKPFVAINCGAIPAELLESELFGHVRGAFTGAVADKT 241 Query: 467 GRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLK 526 G+F+ A + ++FLDE+G MPL LQ KLLRVLQEQE E++GS+K I+ DVR+I+ATN +L+ Sbjct: 242 GKFQQAHQGTIFLDEIGTMPLHLQMKLLRVLQEQEVEKVGSSKKIKLDVRVISATNCNLE 301 Query: 527 KMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETL 586 + V FR+DLYYRLNV PI LPPLRER EDI LLA+ F K + + + SI + Sbjct: 302 EEVEQGRFRADLYYRLNVIPIALPPLRERREDIALLARYFLQKTCTEMNQPLISITPGAM 361 Query: 587 RTLSNMEWPGNVRELENVIERAVLLTRGNVL--------------QLSLPDIVLPEPETP 632 L N WPGNVRELENVIER V LT + + P I P T Sbjct: 362 NCLENYHWPGNVRELENVIERTVTLTDSIAIGKSDLPANISGSCCEDEDPQISCPRL-TE 420 Query: 633 PAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 + + E LI + + GV AA L +KRTTL+ ++KRLGI Sbjct: 421 SGMDMPEVIAGIERCLIKSAMGLSGGV---KARAASLLNIKRTTLVEKIKRLGI 471 >UniRef50_P03027 Nif-specific regulatory protein n=14 Tax=Proteobacteria RepID=NIFA_KLEPN Length = 524 Score = 514 bits (1324), Expect = e-144, Method: Composition-based stats. Identities = 179/525 (34%), Positives = 256/525 (48%), Gaps = 36/525 (6%) Query: 185 DNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLD 244 F + I+ + + + + EV +H + I L ++ L+I + + Sbjct: 18 QQFTAMQRISVVLSRATEASKTLQEVLSVLHNDAFMQHGMICLYDSQQEILSIEALQQTE 77 Query: 245 KQH-PAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLL 303 Q P Q L V + L++ D L+D + Sbjct: 78 DQTLPGSTQIRYRPGEGLVGTVLAQGQSLVLPRVADDQRFLDRLSLYDYDLP----FIAV 133 Query: 304 PLMS-GDTMLGVLKLAQCEEK--------VFTTTNLNLLRQIAERVAIAVDNALAYQEIH 354 PLM +GVL + F T NL+ Q + + A A Q+ Sbjct: 134 PLMGPHSRPIGVLAAHAMARQEERLPACTRFLETVANLIAQTIRLMILPTSAAQAPQQSP 193 Query: 355 RLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTG 414 R++ + ++G+S AM ++ + V++ D+TVL+ GE+GTG Sbjct: 194 RIER--------PRACTPSRGFGLENMVGKSPAMRQIMDIIRQVSRWDTTVLVRGESGTG 245 Query: 415 KELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADK 474 KELIA AIH+ S R VK NCAA+P LLES+LFGHE+GAFTGA QR GRFELAD Sbjct: 246 KELIANAIHHNSPRAAAAFVKFNCAALPDNLLESELFGHEKGAFTGAVRQRKGRFELADG 305 Query: 475 SSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREF 534 +LFLDE+G+ Q KLLR+LQE E ER+G ++ ++ +VR+IAATNR L++ V F Sbjct: 306 GTLFLDEIGESSASFQAKLLRILQEGEMERVGGDETLRVNVRIIAATNRHLEEEVRLGHF 365 Query: 535 RSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEW 594 R DLYYRLNV PI LPPLRER EDI LA KIA GR + I +R L W Sbjct: 366 REDLYYRLNVMPIALPPLRERQEDIAELAHFLVRKIAHSQGRTL-RISDGAIRLLMEYSW 424 Query: 595 PGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGE--------DEY 646 PGNVRELEN +ER+ +L+ ++ + I+ + PP A + E DE Sbjct: 425 PGNVRELENCLERSAVLSESGLIDRDV--ILFNHRDNPPKALASSGPAEDGWLDNSLDER 482 Query: 647 QLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSAL 691 Q ++ L++ V A AA+ LG+ + R++ + I L Sbjct: 483 QRLIAALEKAGWVQA---KAARLLGMTPRQVAYRIQIMDITMPRL 524 >UniRef50_C6HY50 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HY50_9BACT Length = 477 Score = 514 bits (1324), Expect = e-144, Method: Composition-based stats. Identities = 161/373 (43%), Positives = 220/373 (58%), Gaps = 20/373 (5%) Query: 318 AQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSE 377 + N LL+ V V+ ++ LK+ L Sbjct: 117 DRHRRTRLVRVNTALLKDADGHVVGGVEIFHDVTQLAELKKEL------------KGRYA 164 Query: 378 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMN 437 FG+IIG+SE M + + +VAQS STVLI GE+GTGKELIA AIH S R + +K+N Sbjct: 165 FGKIIGQSEKMRELFDLLPVVAQSKSTVLIEGESGTGKELIAHAIHENSPRKDGPFIKVN 224 Query: 438 CAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVL 497 CAA+ G+LES+LFGH RGAFTGA + + GRFELA +LFLDE+G++ +Q KLLRVL Sbjct: 225 CAALSEGVLESELFGHVRGAFTGAVSSKPGRFELASGGTLFLDEIGEISASMQVKLLRVL 284 Query: 498 QEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPE 557 QE+EFER+G K ++ DVR+IAATNRDLK + FR DLYYRL V P+ LPPLRER E Sbjct: 285 QEEEFERVGGTKTLKVDVRVIAATNRDLKAAIDAGTFRRDLYYRLRVVPLFLPPLRERRE 344 Query: 558 DIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVL 617 DIPLL +F + G+N+ + E L N +PGN+REL+N+IE AVLL+ G + Sbjct: 345 DIPLLISSFLSRYNAEFGKNVVGLSQEAQNILMNHSYPGNIRELQNIIEHAVLLSTGRTI 404 Query: 618 QL-SLPDIVLPEPETPPAATVV----ALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGL 672 + LP + P PE A V E +I + +++T G ++ AA+ LG+ Sbjct: 405 GVRELPRDLAPIPEESSFADVALSRSNALRTMEDVMIRKAVEKTQGNMS---QAAKLLGI 461 Query: 673 KRTTLLSRMKRLG 685 R+TL +++ +G Sbjct: 462 GRSTLWRKLREMG 474 >UniRef50_C4XRA9 Transcriptional regulatory protein ZraR n=9 Tax=Proteobacteria RepID=C4XRA9_DESMR Length = 462 Score = 513 bits (1323), Expect = e-144, Method: Composition-based stats. Identities = 155/364 (42%), Positives = 215/364 (59%), Gaps = 27/364 (7%) Query: 338 ERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEM 397 + + + V+ AL + RL EN L ++L EIIG+S AM + + M Sbjct: 108 DVMRLTVERALDHL-------RLARENENLRQKLGPGVVG-PEIIGKSPAMRELFSMIAM 159 Query: 398 VAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGA 457 VA +++TVL+ GE+GTGKEL+A+A+H S R MV +NCAA+ LLES+LFGHE+GA Sbjct: 160 VAPTEATVLVTGESGTGKELVAKALHAGSPRAGGPMVAVNCAALNETLLESELFGHEKGA 219 Query: 458 FTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRL 517 FTGA +R GRF ADK S+FLDE+G++ +Q KLLRV+QE+E +R+G ++ + DVR+ Sbjct: 220 FTGAERRREGRFMAADKGSIFLDEIGEIAPSIQAKLLRVIQEREIQRVGGDRPVGVDVRI 279 Query: 518 IAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRN 577 +AATNRDLKK V FR DLYYRLNV I +PPLRER +DIPLLA+ F + A + + Sbjct: 280 LAATNRDLKKEVEAGRFREDLYYRLNVVAISVPPLRERGQDIPLLAQHFLTRFAEKNRKR 339 Query: 578 IDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGN-VLQLSLPDIVLPEPETPPAAT 636 I + L WPGNVRELEN +ERAV+L+ G V + LP + E A Sbjct: 340 IKGFTPAAMDHLLRCPWPGNVRELENAVERAVILSVGEYVTERELPLSAMREAGGNGAPG 399 Query: 637 VVALE---------------GEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRM 681 + E ++I+ L++T G AA+ LG+ R TL ++ Sbjct: 400 GAGGGAPAPGDMAGLAGMALDDVEREVILATLRDTGG---NKSEAARVLGITRATLHKKL 456 Query: 682 KRLG 685 K+ G Sbjct: 457 KKYG 460 >UniRef50_Q01S08 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01S08_SOLUE Length = 509 Score = 513 bits (1323), Expect = e-144, Method: Composition-based stats. Identities = 171/511 (33%), Positives = 263/511 (51%), Gaps = 21/511 (4%) Query: 184 RDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYL 243 + ++AI+ + S+ D+ EL+ +A+E D D SI L N+L +S L Sbjct: 10 NERLAAILAISQKMNSQRDLSELLDLIAREATSLLDCDRASIFLLDRDTNEL--WSKVAL 67 Query: 244 DKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLL 303 + + + ++ + IN+ + + + G + + L + Sbjct: 68 GSDEILR----FEASRGIAGNAARTGD--TINVRDAYSDPRFYTGIDGKTGYRTRNLLAV 121 Query: 304 PLMS-GDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVD 362 + + ++G + VFT + L +A A+A++ A E+ R ++ L Sbjct: 122 AVRNQRGEIIGAFEALNKRVGVFTARDEESLAALASHAAVAIETAQLIGELRRNQDELAQ 181 Query: 363 ENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAI 422 +N L ++ + + G I+G + + V++ VE + S VLI GETGTGKEL A+AI Sbjct: 182 QNAHLWREVESRYATHG-IVGSGQRIQQVVRLVERIRDSVVNVLITGETGTGKELAAKAI 240 Query: 423 HNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEV 482 H S R + V +NCAA+P LLES+LFG E+G TG R+G+F+ AD +LFLDE+ Sbjct: 241 HYNSPRVRKPFVALNCAALPETLLESELFGIEKGVATG-VNSRVGQFQKADGGTLFLDEI 299 Query: 483 GDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRL 542 GD+ L Q K+LRVLQE+ ER+G I DVRL+AATN+DL+ +A FR DLYYR+ Sbjct: 300 GDLSLTAQAKILRVLQERVLERVGGRAPIAVDVRLLAATNKDLEAEIAKGNFREDLYYRI 359 Query: 543 NVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELE 602 V IH+PPLRE E+IPLLA+ F + R GR + +R L N WPGNVR+L Sbjct: 360 KVIHIHMPPLREIREEIPLLARHFLKEYCRETGREAMEFAPDVMRKLVNSPWPGNVRQLR 419 Query: 603 NVIERAVLLTRGNVLQLS-------LPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKE 655 N + R R ++++ L +P E ++ E E ++I L+E Sbjct: 420 NEVTRLAACARLSLIEEEDLWEGIPLVARHVPTAEPVKLQSLKKAVAEMEGRMIAEALQE 479 Query: 656 TNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 T + AA+ LGL R L+++MKR I Sbjct: 480 TRN---NQQQAAKLLGLSRQGLINKMKRYAI 507 >UniRef50_C4FI59 AAA family ATPase n=1 Tax=Sulfurihydrogenibium yellowstonense SS-5 RepID=C4FI59_9AQUI Length = 531 Score = 513 bits (1323), Expect = e-144, Method: Composition-based stats. Identities = 141/316 (44%), Positives = 202/316 (63%), Gaps = 6/316 (1%) Query: 372 NNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNR 431 S +I +S M VL + VA + + VL+ GE+GTGK ++A+ IHN S R ++ Sbjct: 220 QEAASNKSRLITKSSLMVYVLDIAKTVADTTANVLLEGESGTGKNVLAKYIHNQSSRRDK 279 Query: 432 RMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQP 491 VK+NCAA+P LLES+LFG+ +GAFTGA + G+ ELAD +LFLDE+G++P LQ Sbjct: 280 PFVKINCAAIPDNLLESELFGYVKGAFTGAVKDKPGKVELADGGTLFLDEIGELPTYLQS 339 Query: 492 KLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPP 551 KLL ++QE+EFERLG K + DVR+IAATN+DL ++V + +FR DLYYRL V I +P Sbjct: 340 KLLHLIQEKEFERLGDTKTKKVDVRIIAATNKDLSQLVKEGKFREDLYYRLKVISIKVPA 399 Query: 552 LRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLL 611 LRER EDIP L F +++ ++I I E +R L N ++PGN+RELEN+IERAV+L Sbjct: 400 LRERKEDIPFLINYFIDLYSKQYNKHIKGISPEAVRLLLNYDYPGNIRELENIIERAVIL 459 Query: 612 TRGNVLQL-SLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRL 670 +G +++ LPD ++ + + E DE Q I+RVL+ N AA+ L Sbjct: 460 AKGKFIEVSDLPDEIVYNTKILTQNDLD--EEIDEKQKILRVLESVNW---NKSKAAKIL 514 Query: 671 GLKRTTLLSRMKRLGI 686 + R TL ++K+ G+ Sbjct: 515 NIDRVTLWRKLKKYGL 530 >UniRef50_B8FEY3 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Deltaproteobacteria RepID=B8FEY3_DESAA Length = 460 Score = 513 bits (1322), Expect = e-144, Method: Composition-based stats. Identities = 160/360 (44%), Positives = 219/360 (60%), Gaps = 21/360 (5%) Query: 338 ERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEM 397 E++ + V ALA R+V EN L +L + FG IIG+S AM ++ + Sbjct: 107 EQLILFVKQALAMY-------RVVQENRLLKNELGD-RYSFGNIIGKSPAMVNIFDTIVK 158 Query: 398 VAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGA 457 VA +++TVLI GE+GTGKE++A++IH S R + V +NCAA+ +LES+LFGHE+GA Sbjct: 159 VAPTNATVLIQGESGTGKEMVAKSIHFNSHRKDAPWVAVNCAALAESILESELFGHEKGA 218 Query: 458 FTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRL 517 FTGA+A + GRFELAD +LFLDE+G++ LQ KLLRVLQE+ FER+G K I+ D+RL Sbjct: 219 FTGAAAMKKGRFELADGGTLFLDEIGEISSSLQVKLLRVLQEKTFERVGGVKPIEVDIRL 278 Query: 518 IAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIAR--RLG 575 IAATNRDLKK V + FR DL+YRLNV PI LPPLRER +DIPLL F K A Sbjct: 279 IAATNRDLKKEVENSAFREDLFYRLNVLPIQLPPLRERQKDIPLLVDHFLQKYASGPSGE 338 Query: 576 RNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPET---- 631 + + + R WPGNVRELENVIERA++L + + ++ L + Sbjct: 339 SRVRKVHPDVHRLFQEYAWPGNVRELENVIERAIILCNSDAISVNDLPRELTRSVSNTLH 398 Query: 632 ----PPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 P AT+ E +I R + ++ V AAQ LG+ ++ L ++K+ G+D Sbjct: 399 MEGIPVDATLYETLSMVEQAMIKRAMLMSDNV---QSHAAQILGIGKSGLNQKIKKFGLD 455 >UniRef50_A0YEC8 Transcriptional regulatory protein n=2 Tax=Proteobacteria RepID=A0YEC8_9GAMM Length = 639 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 176/399 (44%), Positives = 245/399 (61%), Gaps = 26/399 (6%) Query: 304 PLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDE 363 P++ +LG + + R ++++ A A E+ LK+RL E Sbjct: 243 PILVNGYILGAVVI---------------FRDVSQKKAYKKALLEALAEVESLKDRLEME 287 Query: 364 NLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIH 423 N L E++ + IIG S + ++L+Q+++VA + +TVLI GE+GTGKEL+ARAIH Sbjct: 288 NAYLQEEIKS-KFNHHRIIGSSAPLQNILQQIDLVAPTKATVLITGESGTGKELLARAIH 346 Query: 424 NLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVG 483 SGR+ R ++++NCAA+P L ES+ FGH +GAFTGAS+ R GRFELAD S+FLDEVG Sbjct: 347 ESSGRSGRSLIRVNCAAIPQDLFESEFFGHVKGAFTGASSDRPGRFELADGGSIFLDEVG 406 Query: 484 DMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLN 543 ++PL LQ KLLRVLQEQEFER+G DVR+I ATNRDLK+MVA+ FR DLY+RLN Sbjct: 407 EIPLHLQGKLLRVLQEQEFERVGEAITRTVDVRIITATNRDLKQMVAEGLFREDLYFRLN 466 Query: 544 VFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELEN 603 +FPI PLR+R +DIP L + F + A R ++ IP + L +WPGNVRELEN Sbjct: 467 IFPIESIPLRQRKDDIPQLTQHFLGQAAIRANKSDLRIPLHEIEKLKAYDWPGNVRELEN 526 Query: 604 VIERAVLLTRGNVLQL---------SLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLK 654 VIER V+L RGN+++ ++ + + + + E Q I+R L Sbjct: 527 VIERQVILIRGNIVRFNNLLSSDNNAIIEGAGADKDNKYEILTEPQLRQMEKQNIIRALH 586 Query: 655 ETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGID-KSALI 692 G V G GAA L +K TTL SR+K+LGI+ + +L+ Sbjct: 587 YCKGRVFGDGGAADLLSIKPTTLSSRIKKLGINTRDSLL 625 >UniRef50_A5D2K0 Transcriptional regulator n=2 Tax=Clostridia RepID=A5D2K0_PELTS Length = 568 Score = 512 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 152/356 (42%), Positives = 209/356 (58%), Gaps = 7/356 (1%) Query: 335 QIAERVAIAVDNALAYQEIHRLKERLVD-----ENLALT-EQLNNVDSEFGEIIGRSEAM 388 + ++ AV + +I L E L ENL Q+ F +IIG S + Sbjct: 205 VVDGKMEGAVCVFQHFTDIMNLMEELKKSTTIIENLTDKLGQVTTSKYSFDDIIGDSPEL 264 Query: 389 YSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLES 448 + E AQS+STVLILGE+GTGKEL+A AIH S R +K+NCAA+P LLES Sbjct: 265 RKCITLAEKSAQSNSTVLILGESGTGKELLAHAIHAASMRRENPFIKVNCAAIPDTLLES 324 Query: 449 DLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSN 508 + FG+ +GAFTGA +IG+FELA ++FLDE+GDM L LQ KLLRVLQE EFER+G N Sbjct: 325 EFFGYAKGAFTGAVKSKIGKFELAHGGTIFLDEIGDMNLLLQAKLLRVLQEMEFERVGGN 384 Query: 509 KIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTF 568 + I+ DVR+IAATNR+L++++ FR DLYYRLNV I +PPLR R ED+P L Sbjct: 385 QTIKVDVRVIAATNRNLRELIRQGRFREDLYYRLNVVEITMPPLRARKEDLPALVSHLIT 444 Query: 569 KIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQ-LSLPDIVLP 627 + R+LG+N+ I + L + +WPGNVRELENVIER ++ +L + V Sbjct: 445 SLNRKLGKNVKGISKDAEEVLFSYDWPGNVRELENVIERVMVTADEEILTKKNFIQHVNQ 504 Query: 628 EPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKR 683 + + + E LI + + + V G + AAQ L + TL +++K+ Sbjct: 505 FRMSSERDVDLMPIEQMEEMLIRKAISKFGNTVEGKRRAAQALNISLATLYNKLKK 560 >UniRef50_Q1N5U9 Sigma-54 dependent transcriptional regulator/sensory box protein n=1 Tax=Bermanella marisrubri RepID=Q1N5U9_9GAMM Length = 479 Score = 512 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 164/383 (42%), Positives = 233/383 (60%), Gaps = 17/383 (4%) Query: 304 PLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDE 363 P++ ++ G + + + I+ER I A E LKE+L E Sbjct: 112 PILQEGSIQGAIVV---------------FKNISERKRIESALQKALTENRFLKEKLEAE 156 Query: 364 NLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIH 423 N L ++ + +IIG+S A+ + Q+ + A + + +LI GE+GTGKEL+ARAIH Sbjct: 157 NSYLQSEIESNYQ--SDIIGQSPAIEHLQTQISLSAPTSANILIQGESGTGKELVARAIH 214 Query: 424 NLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVG 483 S R + +VK+NC A+P GL++S+LFGHE+GAFTGA QRIGRFELA+K +LFLDEV Sbjct: 215 QQSERQAQTLVKLNCGAIPEGLVDSELFGHEKGAFTGAVKQRIGRFELANKGTLFLDEVS 274 Query: 484 DMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLN 543 ++PL+ Q KLLRVLQE EFER+G NK I+ DVR+IAA+N++L++ V D FR DLYYRLN Sbjct: 275 ELPLDAQVKLLRVLQEGEFERVGGNKTIRVDVRIIAASNKNLEQAVHDGSFRLDLYYRLN 334 Query: 544 VFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELEN 603 VF + +PPLRER D+P+L+ F K +G++ + +L+ +S+ +WPGN+REL N Sbjct: 335 VFSVQVPPLRERKSDLPILSHFFAKKACADMGKSFKGLHMPSLKWMSHYQWPGNIRELSN 394 Query: 604 VIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGP 663 IE +L G + + + + E E Q I + L NG +AG Sbjct: 395 WIEHNAILHTGGLFHIHPMAHARHDHSVEHDNESIVSLAEAEKQHIQKALLHCNGRIAGA 454 Query: 664 KGAAQRLGLKRTTLLSRMKRLGI 686 GAAQ L L +TL S+MK+LGI Sbjct: 455 NGAAQLLQLPASTLRSKMKKLGI 477 >UniRef50_Q1D4K8 Sigma-54 dependent DNA-binding response regulator n=3 Tax=Myxococcus RepID=Q1D4K8_MYXXD Length = 471 Score = 512 bits (1319), Expect = e-143, Method: Composition-based stats. Identities = 157/402 (39%), Positives = 226/402 (56%), Gaps = 17/402 (4%) Query: 297 IQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNAL-----AYQ 351 + T +P M G T+L + + T + E + DN L A Q Sbjct: 51 VLTDVRMPQMDGLTLLKTAREQGSDATFVMMTAFASVETAVEAMKSGADNFLLKPLDADQ 110 Query: 352 EIHRL-----KERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVL 406 + L K L E AL +Q+ + F +IIG S + + + A + +TVL Sbjct: 111 VLVTLGKVLEKRSLRQEAEALRDQVRSRVRRFHDIIGESPQLQGIYDVIRRAAGTRATVL 170 Query: 407 ILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRI 466 ILGE+GTGKELIA+A+H S R ++ ++++CAA+ LLES+LFGHE+G+FTGA A++ Sbjct: 171 ILGESGTGKELIAQALHQESPRKDKPFIRVHCAALSENLLESELFGHEKGSFTGALARKE 230 Query: 467 GRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLK 526 GRFELAD +LFLDE+G++ +Q KLLRVLQ++EFER+G + ++ DVR++AAT+RDL Sbjct: 231 GRFELADGGTLFLDEIGEISPAVQVKLLRVLQQREFERVGGTQTLKVDVRIVAATHRDLV 290 Query: 527 KMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETL 586 V FR DLYYRLNV + LPPLR+R D+P L F K + G+ + + TL Sbjct: 291 AEVKAGRFREDLYYRLNVVSVTLPPLRDRKSDVPALVNHFLEKYSDSYGKQVRGLAPGTL 350 Query: 587 RTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGED-- 644 + L + +WPGN+RELEN IERAV+L +G L VL P +T + G Sbjct: 351 QALLSHDWPGNIRELENAIERAVVLAQGQELSTDDLPPVLRGPRPHGTSTGALIPGATLA 410 Query: 645 --EYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRL 684 E + I+R L+ G + AA+ LG+ + R+K Sbjct: 411 AIEREAILRTLEMVQGSTS---RAAEVLGISVRKIQYRLKEY 449 >UniRef50_D2QZ64 Transcriptional regulator, NifA subfamily, Fis Family n=2 Tax=Planctomycetaceae RepID=D2QZ64_9PLAN Length = 677 Score = 512 bits (1319), Expect = e-143, Method: Composition-based stats. Identities = 173/502 (34%), Positives = 256/502 (50%), Gaps = 19/502 (3%) Query: 197 VLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQHPAHEQSEVD 256 + S+ D+ + + +D + L R N N + L S Sbjct: 182 LASQPDLAAVAHLALSGLFESTQVDAGGVWLL-PRGNASNSAADLSLVASRTDRLPSYHR 240 Query: 257 EAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLK 316 + L V + E +L E D ++ P+ ++G++ Sbjct: 241 LSAFLAATVLRDGEAVLARNIEGDSQLASR---DSKGEFHTTSVLCAPIRLEKKVVGMIH 297 Query: 317 LAQCEEKVF-TTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVD 375 L + +L +A+ VA+AV N QE+ + E L +QL Sbjct: 298 LYSTDSARVPDPDDLEFTLAVADNVALAVRNLHRQQELAENLLQTRTEVQQLRKQLGAES 357 Query: 376 SEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVK 435 E++G SE + SV +Q+ A S +TVLI GE+G GKEL+ARA+H S R V Sbjct: 358 ----ELVGSSEVLSSVQRQIARAAPSRATVLIRGESGVGKELVARAVHYSSPRKRGPFVC 413 Query: 436 MNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLR 495 +NCAA+ LLES+LFGHE+GAFTGA+ ++IG+FE A + +L LDE+G+M +Q K LR Sbjct: 414 LNCAALSESLLESELFGHEKGAFTGATDRKIGKFESAHQGTLMLDEIGEMSPSIQAKFLR 473 Query: 496 VLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRER 555 VL+ FER+G ++ I+ DVR+IAATNRDL+K VA+ FR DLY+RLNV I +PPLR+R Sbjct: 474 VLEGHPFERVGGSQPIKVDVRVIAATNRDLEKAVAEGAFRRDLYFRLNVVEIQVPPLRKR 533 Query: 556 PEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGN 615 PEDI LA F + GR + L WPGNVREL+NVIERAV+L+RG+ Sbjct: 534 PEDIIELAHFFLQRFNAETGRKLRGFSPAATERLQQYRWPGNVRELKNVIERAVVLSRGD 593 Query: 616 VLQLSLPDIV-------LPEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQ 668 V++ + + +P + V + E + I+ LK TN AA Sbjct: 594 VVEPEDLHLSNLATASESGDNPSPKTSFVPMSLDDIEKRHILATLKATNWH---KSRAAA 650 Query: 669 RLGLKRTTLLSRMKRLGIDKSA 690 LG++R+TL +++R +++ Sbjct: 651 ILGVERSTLDRKIRRYELNEPG 672 >UniRef50_Q2LSK2 Sigma-54 dependent transcriptional regulator n=4 Tax=Bacteria RepID=Q2LSK2_SYNAS Length = 472 Score = 511 bits (1317), Expect = e-143, Method: Composition-based stats. Identities = 159/364 (43%), Positives = 226/364 (62%), Gaps = 22/364 (6%) Query: 338 ERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEM 397 + V + V+ AL+Y L +EN+ L + L +FG+++G SE M ++ +E Sbjct: 120 DLVTLTVNRALSYAS-------LQEENVTLRDHLRE-QYDFGKMLGYSECMKTIFDTIEK 171 Query: 398 VAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGA 457 VA+SDSTV+I GE+GTGKEL+ARAIH S RNN ++ +NC A+P LLES+LFGHE+GA Sbjct: 172 VAKSDSTVIIYGESGTGKELVARAIHFNSNRNNFPLIPVNCGAIPEDLLESELFGHEKGA 231 Query: 458 FTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRL 517 FTGA R+GRFELA S+FLDE+GDM LQ K+LRV+QE++FER+G K I DVR+ Sbjct: 232 FTGAIRNRLGRFELAQGGSIFLDEIGDMSPALQVKVLRVIQEKQFERIGGVKTINADVRI 291 Query: 518 IAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRN 577 IAAT+++L+ V ++ FR DL+YR+NV PIHLP LRER DI +LA F K A+ + Sbjct: 292 IAATHQNLELAVTEKRFREDLFYRINVIPIHLPALRERGADIAILANHFLQKFAQSKKKE 351 Query: 578 IDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQL-SLPDIVLPEPETPPAAT 636 + E + + + WPGNVRELEN+IE V++ ++L LP + + + Sbjct: 352 VTRFTPEAIACMLHYPWPGNVRELENLIEMLVVMKEDGEIKLEDLPSKIRQFKKETQSFK 411 Query: 637 VVALEGE----------DEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 + E E ++++ L +TNGV AA+ L L RTTL+ ++KRL I Sbjct: 412 EYQIPEEGIDFNDVVYQFEKNILLKALAKTNGV---KNRAAKLLNLNRTTLVEKLKRLNI 468 Query: 687 DKSA 690 + Sbjct: 469 SSES 472 >UniRef50_Q1INE5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Acidobacteria RepID=Q1INE5_ACIBL Length = 459 Score = 511 bits (1316), Expect = e-143, Method: Composition-based stats. Identities = 151/356 (42%), Positives = 220/356 (61%), Gaps = 15/356 (4%) Query: 338 ERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEM 397 E A V ALA+ +R EN+ L EQ+ + +++ RS+AM + +E Sbjct: 111 EETAHLVSKALAH-------KRTEQENVRLKEQIE--EHAHVDLVWRSDAMKKINDAIET 161 Query: 398 VAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGA 457 VA +D+TVLI GE+GTGKE++ARAIH LS R MV ++C A+ LLES+LFGHE+GA Sbjct: 162 VAPTDATVLITGESGTGKEVVARAIHALSTRRFHPMVPVHCGALTETLLESELFGHEKGA 221 Query: 458 FTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRL 517 FTGA ++ G+FE+A+ ++FLDE+GD+ L+ Q LLRVLQE+E R+G N+ I+ D R+ Sbjct: 222 FTGAQYRKKGKFEVAEGGTVFLDEIGDISLKTQTDLLRVLQEREIVRVGGNQPIKVDFRI 281 Query: 518 IAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRN 577 +AATN+DL+K++ + FR DL+YRLNVF I LPPLR+R EDIPLL FT K A ++ + Sbjct: 282 VAATNKDLEKLIEEGHFRPDLFYRLNVFRIELPPLRDRREDIPLLVNHFTKKFAEQMNKR 341 Query: 578 IDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPA--- 634 + + + + L WPGNVRELEN +ERA+++ + L+ + + + T + Sbjct: 342 VTRVASPAMNMLQQYPWPGNVRELENAVERAMVVAQEPELRETDFVLKVKAAATMSSTNG 401 Query: 635 ATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSA 690 + E + I+ VL ETN AA+ L + R TL ++KR G K+ Sbjct: 402 TGTPKTLEDIEKEHILHVLDETNW---NQTRAAEMLDIDRVTLHHKIKRYGWQKTT 454 >UniRef50_B5ZJF6 Transcriptional regulator, NifA, Fis Family n=4 Tax=Gluconacetobacter diazotrophicus RepID=B5ZJF6_GLUDA Length = 581 Score = 510 bits (1314), Expect = e-143, Method: Composition-based stats. Identities = 175/565 (30%), Positives = 274/565 (48%), Gaps = 73/565 (12%) Query: 190 LVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQHPA 249 L I+ + + + ++ V + + D+++ + L N + + + A Sbjct: 27 LHEISKILCAPTETVGIIRNVLAVLESFVDLNNAVVALFDAAGN---VETIIGTEADDAA 83 Query: 250 HEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGD 309 + ++ S++ LL+ D + T G + +P++S D Sbjct: 84 ARRYFDSIPEQAVGQIAVSRQPLLVPDVTGDTRYGFATSQAWTVGAGRIGVIGVPILSRD 143 Query: 310 TMLGVLKLAQC---EEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLA 366 ++GV+ L + EE V + ++ LL +A + V ++ + R +E L+ ++ Sbjct: 144 RLVGVMLLDRPAIPEESVVGSMDVCLLSMVAGLMGQMV---RLHRLVQRDRENLLHDSGL 200 Query: 367 LTEQLNNVDSE-FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNL 425 D + I+G S A+ +VL++VE+VA+SD TVL+ GE+GTGKEL A+AIH Sbjct: 201 AQPAAPVADGGGYMGIVGDSPALRAVLQKVEIVARSDVTVLLRGESGTGKELFAQAIHQA 260 Query: 426 SGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDM 485 S R+ + VK+NCAA+P +LES+LFGHE+GAFTGA QR GRFELAD +LF+DE+G++ Sbjct: 261 SPRHRKPFVKLNCAALPESVLESELFGHEKGAFTGAIGQRKGRFELADGGTLFMDEIGEI 320 Query: 486 PLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVF 545 Q KLLRVLQE EFER+G + ++ DVR++ ATNR+L++ V+ FR+DLYYRL+V Sbjct: 321 SPSFQAKLLRVLQEGEFERVGGTRTLKVDVRVVTATNRNLEEAVSKGRFRADLYYRLSVI 380 Query: 546 PIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVI 605 PI LPPLR+RP DIP+LA F + R +I ++ + L+ +PGNVRELEN I Sbjct: 381 PIFLPPLRDRPTDIPMLANEFLRRFN-ETNRTSLTIASDGMDVLTTCYFPGNVRELENCI 439 Query: 606 ERAVLLTRGNVLQLSL---------------PDIVLPEPETPPAATVVA----------- 639 R L G + + P P P PAA+ VA Sbjct: 440 RRTATLAPGQTIGAADFACRSDGCLSSIFWRPAAPAPGPGRHPAASDVAGDTGAATELPV 499 Query: 640 ---------------------------------LEGEDEYQLIVRVLKETNGVVAGPKGA 666 E + ++ ++ V A A Sbjct: 500 LPAPRSSSQSSPQSSAAPDPATCPSSAVCSAAQGEWSPQRDELLEAMETAGWVQA---KA 556 Query: 667 AQRLGLKRTTLLSRMKRLGIDKSAL 691 A+ LGL + +++ GI Sbjct: 557 ARILGLTPRQIGYALRKNGISIKKF 581 >UniRef50_D2R3W1 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Planctomycetaceae RepID=D2R3W1_9PLAN Length = 611 Score = 510 bits (1313), Expect = e-142, Method: Composition-based stats. Identities = 174/562 (30%), Positives = 269/562 (47%), Gaps = 34/562 (6%) Query: 128 EGHIFGGCEFIRYDDRPWSEKEFNRLQTFTQIVSVVTEQIQSRVVNNVDYELLCRERDNF 187 G EFI + + T T + V + + + + R D Sbjct: 84 CSLKIGSTEFIFLQSASRPSESEQQEHTQTIVRDRVVQGHDTGSIGVTVLRDVERAHDFL 143 Query: 188 RILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQH 247 L ++ +L D D++V E + + L +L Sbjct: 144 -TLHQLSIKLLGCTDPDQVVRESLDLLQQRTRAAVVG-FLWVSDDGQLKPKVVM------ 195 Query: 248 PAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMS 307 P +V + +LTE V + + + I+ + + D +PL+ Sbjct: 196 PEDAAGKVKLSNSLTEMVIRQGKAVWIDSQLHSEGMQTLQHYADA--------ICVPLIH 247 Query: 308 GDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLAL 367 T LG + L E F ++ + +A + +A+ A + RL+D++ Sbjct: 248 EATTLGAIHLY-LEHGRFRQSDFEVAIPLANILTVALVRARRDATLKADHRRLIDKSAV- 305 Query: 368 TEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSG 427 E+IG S+ M + ++ VA++ +VL+ GE+G GKEL+ARA+H S Sbjct: 306 ----------SDELIGDSKPMDDLRSRIARVARATGSVLVRGESGVGKELVARAVHRSSN 355 Query: 428 RNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPL 487 R++R M+ +NCAA+P L+ES LFGH++GAFTGA + +G F+ A +LFLDEVG+M L Sbjct: 356 RSDRPMLSVNCAALPRDLMESQLFGHKKGAFTGADSDHVGWFQQAHTGTLFLDEVGEMTL 415 Query: 488 ELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPI 547 E Q KLLR+L+ F +G K + DVR+IAATNRDL + V + FR DLYYRL+VF + Sbjct: 416 EGQAKLLRILEGHPFLPVGGTKEVSVDVRVIAATNRDLAEFVREGRFREDLYYRLSVFEL 475 Query: 548 HLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIER 607 ++PPLRER DI L F R+ GR ++ + L +WPGNVR+L NVI+ Sbjct: 476 YIPPLRERGSDIRKLIDFFVDHFRRQHGRPSLTLSVDAREKLEGYQWPGNVRQLRNVIDS 535 Query: 608 AVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAA 667 AV++ G+++ LPD + A E +LI LK T+G V AA Sbjct: 536 AVVMCEGSII---LPDDLGLRDVGNAAELESLRMDYWERRLIQEALKRTSGNVP---EAA 589 Query: 668 QRLGLKRTTLLSRMKRLGIDKS 689 + LGL R TL +++ GI++ Sbjct: 590 KLLGLGRATLYRKIEEYGIERK 611 >UniRef50_A8ZZC1 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZZC1_DESOH Length = 926 Score = 510 bits (1313), Expect = e-142, Method: Composition-based stats. Identities = 187/554 (33%), Positives = 276/554 (49%), Gaps = 28/554 (5%) Query: 138 IRYDDRPWSEKEFNRLQT-FTQIVSVVTEQIQSRVVNNVDYELLCRERDNFRIL--VAIT 194 ++ DD + ++ + ++ E +L + I Sbjct: 392 LKRDDPAEARRQARKAWKELAGYGETFFPDDLRHLLAEEPAREPTPEVKEEFLLRFIDII 451 Query: 195 NAVLSRLDMDELVSEVAKEIHYYFDIDDISIV-LRSHRKNKLNIYSTHYLDKQHPAHEQS 253 + ++ D L + + + + YF + ++ K + + L + Sbjct: 452 SELMPGPAPDRLFTRLVQATNRYFGAERGALFWFSDTPKQTPALRAACNLTETEIFSNAF 511 Query: 254 EVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLG 313 + A L ++ +L+ +R D + + + LP G Sbjct: 512 RSNLA--LVFDAWREGRSILVRRGDRSDD-----------PYREKAILCLPFQIEGKPRG 558 Query: 314 VLKLAQCE-EKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLN 372 VL F + L ++ + +++A E L + Sbjct: 559 VLYHDNAYVTDCFNFLDPAQLNRLVHTLGSYIEHAWDLSR--------GFEKLRPPLAVP 610 Query: 373 NVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRR 432 + + EI+G S + +VL QV+ VA +DSTVLILGETG GKEL+AR IH S R + Sbjct: 611 STVTGTVEIVGESSRIKAVLTQVDQVAPTDSTVLILGETGVGKELVARRIHQQSRRCDMP 670 Query: 433 MVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPK 492 ++ ++ A+P GL+ES+LFGHE+GAFTGA Q+ G ELA + +LF+DEVG++P +Q K Sbjct: 671 LIVVDPTAIPEGLVESELFGHEKGAFTGADRQKKGLLELAHQGTLFIDEVGEIPKSIQVK 730 Query: 493 LLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPL 552 LLR LQE+ +RLG K + +D RLIAATNRDL VA FR DLYYRLNV PI +PPL Sbjct: 731 LLRALQEKTIQRLGGTKPLFSDFRLIAATNRDLAGQVAAGRFREDLYYRLNVIPITVPPL 790 Query: 553 RERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLT 612 RER +DI LLA F + + R R + E + L WPGNVRELENVIER VLL+ Sbjct: 791 RERKQDIVLLAACFLRRHSLRHNRPAMVLSPEVQQRLCAYPWPGNVRELENVIERGVLLS 850 Query: 613 RGNVLQLSLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGL 672 G+ L+L LP P P + L+ E + + I VL++T G +AGP GAA+ LG+ Sbjct: 851 TGDHLELDLP-AGHTRPGADPFTDLPTLD-ELQRRYIHHVLEKTGGKIAGPDGAAKILGM 908 Query: 673 KRTTLLSRMKRLGI 686 KRT+L +RMKRL + Sbjct: 909 KRTSLYNRMKRLNV 922 >UniRef50_Q0SQI9 Phosphocarrier HPr/sensory box protein/sigma-54 dependent transcriptional regulator n=21 Tax=Clostridium RepID=Q0SQI9_CLOPS Length = 668 Score = 509 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 149/363 (41%), Positives = 211/363 (58%), Gaps = 15/363 (4%) Query: 336 IAERVAIAVDNALAYQEIHRLKERL---VDENLALTEQLNNV---DSEFGEIIGRSEAMY 389 I + + + I L +L E + +S F IIG + + Sbjct: 307 IDGQFKGVISTSRPVSLIKELMSKLNKSEQELDYYKNEFLRQLSKNSSFNNIIGSTRTLK 366 Query: 390 SVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESD 449 ++ + +++ STVLI GE+GTGKELIA+AIHN S R N+ V++NCA++P LLES+ Sbjct: 367 DIMYMCQKASETTSTVLIRGESGTGKELIAKAIHNNSNRKNKPFVRVNCASIPENLLESE 426 Query: 450 LFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNK 509 LFG+E+GAFTGA + G+F +AD ++FLDE+GDMPL +Q KLLRVLQE+E E +G Sbjct: 427 LFGYEKGAFTGAVQSKPGKFAIADTGTIFLDEIGDMPLSMQVKLLRVLQEREIESVGGIT 486 Query: 510 IIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFK 569 DVR+IAATNR+L++M+ D FR DLYYRLNV I+LPPLRER EDIP LA+ F K Sbjct: 487 PKNIDVRVIAATNRNLEEMIEDGSFREDLYYRLNVLGINLPPLRERKEDIPELAEHFITK 546 Query: 570 IARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLS-LPDIVLPE 628 + ++L + I I + L L WPGN+RELEN++ERA+ L G+ + S LP + P Sbjct: 547 LNKKLHKTILGIKQDALNLLIEYSWPGNIRELENIMERAINLCDGDYIDSSYLPSYLKPV 606 Query: 629 PETPPAATV----VALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRL 684 + + E E Q+I +K+ A + LGL T+ + K+ Sbjct: 607 ESKSFNLNIDIDHILPFEEYEKQIIEAAMKKYKSF----NKAGKALGLTHRTVSLKCKKY 662 Query: 685 GID 687 I+ Sbjct: 663 NIE 665 >UniRef50_UPI00016C585F ornithine decarboxylase inhibitor-putative sigma54 transciptional regulator n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C585F Length = 643 Score = 509 bits (1311), Expect = e-142, Method: Composition-based stats. Identities = 166/473 (35%), Positives = 245/473 (51%), Gaps = 32/473 (6%) Query: 223 ISIVLRSHRKNKLNIYSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLIN--LHERD 280 + L+ R+ +L + H+ S+ + L++R E + + L +RD Sbjct: 196 AVLALKEGRELELVTHRVRN-GGPATYHKVSQFVSSEVLSDRQAILAENVATDRMLKDRD 254 Query: 281 DLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQC-EEKVFTTTNLNLLRQIAER 339 +A ++ +L P+M+ D +LG+L L + +L +A Sbjct: 255 SIAEL----------KVASLICAPIMADDKVLGLLHLYRTIGHAPLNADDLEFTLAVARH 304 Query: 340 VAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVA 399 + + L EN +L QL EI+G S + + QV VA Sbjct: 305 LGTVWHRFSR-------QASLSAENRSLRSQLKIES----EIVGESAVLQQIESQVVRVA 353 Query: 400 QSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFT 459 ++ +TVL+ GE+G+GKEL+ARAIH S R + +NCAA+ LLES+LFGHE+GAFT Sbjct: 354 ETRATVLVRGESGSGKELVARAIHLHSPRREGAFICLNCAALTETLLESELFGHEKGAFT 413 Query: 460 GASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIA 519 GA+ + +G+FE AD ++FLDE+G+M L Q K LRVL+ FER+G N I+ DVR++A Sbjct: 414 GATERMVGKFEAADNGTIFLDEIGEMALSTQAKFLRVLEGHPFERVGGNTAIKVDVRVVA 473 Query: 520 ATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNID 579 ATNR L++ V FR DL+YRL V + +PPLR+R +D+PLLA+ F + AR R Sbjct: 474 ATNRPLEEAVRAGTFRRDLFYRLQVVQLDVPPLRDRLDDVPLLAEHFLKRFARETARKFK 533 Query: 580 SIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVV- 638 E L L WPGNVREL NVIERAV L G L + + + P + + Sbjct: 534 GFTPEALDKLRAYRWPGNVRELRNVIERAVALGNGPQLDAADIWLSGLDVGAPVVSAALV 593 Query: 639 ---ALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDK 688 E E + I+ LK T+ AA LG++R+TL ++ R G+ K Sbjct: 594 YKPETIEEVEKRHILETLKHTDW---NKSRAATILGIERSTLDRKIDRYGLTK 643 >UniRef50_B0VES5 Putative uncharacterized protein n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VES5_9BACT Length = 1454 Score = 509 bits (1311), Expect = e-142, Method: Composition-based stats. Identities = 166/534 (31%), Positives = 263/534 (49%), Gaps = 40/534 (7%) Query: 166 QIQSRVVNNVDYELLCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISI 225 Q SR ++ E+ E + IT + + D+D L+ + + + D + Sbjct: 949 QKISREYSSQMEEVKFEENLLNQF-YEITQNLNTITDLDVLIEQSLSSLVEIANADGGML 1007 Query: 226 VLRSHRKNKLNIYSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPY 285 +L + + P + + + ++ + + +++ + L Sbjct: 1008 LL--------------HPNPSLPDAWEYRIYHNFSPEDKYHDQFQNICYEVYQNNKLENI 1053 Query: 286 ERMLFDTWGNQIQTLCLLPLMSGDTMLGV-LKLAQCEEKVFTTTNLNLLRQIAERVAIAV 344 ++ F N I LPL +GV L + K F+ +NLL ++ ++ + + Sbjct: 1054 KQPHFAPSYNNI---LALPLSIRKNTMGVVLLFCKSGSKYFSERIINLLSALSNQIIVII 1110 Query: 345 DNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDST 404 +N L+ L + + EQL++ + + IIG+S M + + +E V + +T Sbjct: 1111 ENILS--------ANLEKSHNIIREQLSSNNI-YSNIIGKSPEMMKIFEIIEKVKDTPTT 1161 Query: 405 VLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQ 464 VL+ G +GTGKELIARA+H S R N+ V C A+P LLES+LFGH +G+FTGA+ Sbjct: 1162 VLLEGPSGTGKELIARALHYSSNRRNKAFVAQYCGALPETLLESELFGHVKGSFTGAAYD 1221 Query: 465 RIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRD 524 + G FE+AD + FLDE+ D+ Q KLLR LQE E +R+G+ K + DVR++ ATN Sbjct: 1222 KKGLFEIADGGTFFLDEISDISQSTQSKLLRFLQEGEIKRVGATKTEKVDVRVVCATNTP 1281 Query: 525 LKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAE 584 L + V EFR DLYYRLNV I +PPL+ R DIPLLA F K +R+ +N+ AE Sbjct: 1282 LMERVKSGEFRLDLYYRLNVIRIDVPPLKNRTGDIPLLAIHFLDKYNKRMNKNVMGFTAE 1341 Query: 585 TLRTLSNMEWPGNVRELENVIERAVLLTRGNV-LQLSLP--------DIVLPEPETPPAA 635 ++ L +WPGNVR+LEN IERAV L N ++ S + Sbjct: 1342 AMKVLEQYDWPGNVRQLENEIERAVTLAEPNTFIKPSDFSEEVYRHIEYSKTIAMLSGKK 1401 Query: 636 TVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKS 689 + E E +LI + L++ AA+ LGL R L+ +M+R + + Sbjct: 1402 NLKDAIEELERKLISQSLEKFQW---NQTQAAKELGLSRQGLIKKMQRYNLYRE 1452 >UniRef50_A7HBA5 Two component, sigma54 specific, transcriptional regulator, Fis family n=6 Tax=Bacteria RepID=A7HBA5_ANADF Length = 466 Score = 509 bits (1311), Expect = e-142, Method: Composition-based stats. Identities = 160/421 (38%), Positives = 246/421 (58%), Gaps = 19/421 (4%) Query: 284 PYERMLFDTWGNQIQTLCLL----PLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAER 339 P R + ++ ++ ++ P M G +L K Q E V T + Sbjct: 36 PDGRSAVEKLKSERWSIMIVDLKMPGMDGLQVLEAAKKLQPELAVVIMTAYATVDTAVTA 95 Query: 340 VAIAVDNALAY----QEIHRLKER------LVDENLALTEQLNNVDSEFGEIIGRSEAMY 389 + + + L +E+ + ++ LV EN L + L + F +++ +S AM Sbjct: 96 MKLGAYDYLVKPFDPEELSIMMQKIVSQQSLVRENAVLRQALKQ-EYRFRDLLSKSPAMQ 154 Query: 390 SVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESD 449 SV + A+S+ST+L+LGE+G+GKE++ARA+H S R V ++CAA+ LLES+ Sbjct: 155 SVFELARTAARSNSTILVLGESGSGKEVLARAVHAESPRAGGPFVAVSCAALTESLLESE 214 Query: 450 LFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNK 509 LFGHE+G+FTGA ++R G+FE A +LFLDEVGD+ +LQ LLRVL+E+ F R+G N+ Sbjct: 215 LFGHEKGSFTGAISRRKGKFEAAHGGTLFLDEVGDIGPKLQLDLLRVLEERRFHRVGGNE 274 Query: 510 IIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFK 569 I+ DVR+IAATNRDL++ + +FR DL+YRLNV PI +PPLRER EDIPLL + F + Sbjct: 275 PIEVDVRIIAATNRDLRRAAHEGKFREDLFYRLNVIPILVPPLRERREDIPLLVENFVER 334 Query: 570 IARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEP 629 ++ + R I+ + + + L +WPGNVREL NV+ER ++ G V+QLS + Sbjct: 335 LSVEMKRRIEGVSPDAMGALMAHDWPGNVRELRNVLERGAVVATGTVIQLSDLGLPTRLE 394 Query: 630 ETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKS 689 T+ +LE E E + + VL NG V+ +A+ LG+ R TL ++M++ G+ + Sbjct: 395 AASKPGTLASLE-EVEKRHVAAVLAHANGNVS---QSARILGIDRVTLYNKMRKYGLRRD 450 Query: 690 A 690 Sbjct: 451 G 451 >UniRef50_P05407 Nif-specific regulatory protein n=11 Tax=Rhizobiales RepID=NIFA_BRAJA Length = 582 Score = 508 bits (1309), Expect = e-142, Method: Composition-based stats. Identities = 171/555 (30%), Positives = 279/555 (50%), Gaps = 59/555 (10%) Query: 190 LVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQHPA 249 + I+ + + ++ ++ V + + + + L + + + Sbjct: 34 IYEISKILNAPGRLEVTLANVLGLLQSFVQMRHGLVSLFNDD-GVPELTVGAGWSEGTDE 92 Query: 250 HEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGD 309 ++ V + + E V + +++ N+ + +R + + +P+ Sbjct: 93 RYRTCVPQKA-IHEIVATGRSLMVENVAAETAFSAADREVLGASDSIPVAFIGVPIRVDS 151 Query: 310 TMLGVLKLAQCEEKV--FTTTNLNLLRQIAERVAIAVDNALAY----QEIHRLKERLVDE 363 T++G L + + E + LL +A + + + ++ K+RL + Sbjct: 152 TVVGTLTIDRIPEGSSSLLEYDARLLAMVANVIGQTIKLHRLFAGDREQSLVDKDRLEKQ 211 Query: 364 NLALTEQLNNVDS-EFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAI 422 + + IIG S A+ ++L+++ +VA+S+STVL+ GE+GTGKEL+A+AI Sbjct: 212 TVDRGPPARERKQLQAHGIIGDSPALSALLEKIVVVARSNSTVLLRGESGTGKELVAKAI 271 Query: 423 HNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEV 482 H S R R VK+NCAA+P +LES+LFGHE+GAFTGA + R GRFELADK +LFLDE+ Sbjct: 272 HESSVRAKRPFVKLNCAALPETVLESELFGHEKGAFTGAVSARKGRFELADKGTLFLDEI 331 Query: 483 GDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRL 542 G++ Q KLLRVLQEQEFER+GSN I+ DVR+IAATNR+L++ VA EFR+DLYYR+ Sbjct: 332 GEISPPFQAKLLRVLQEQEFERVGSNHTIKVDVRVIAATNRNLEEAVARSEFRADLYYRI 391 Query: 543 NVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELE 602 +V P+ LPPLRER DIPLLA+ F K GR++ ++ A + L + ++PGNVRELE Sbjct: 392 SVVPLLLPPLRERRSDIPLLAREFLRKFNSENGRSL-TLEASAIDVLMSCKFPGNVRELE 450 Query: 603 NVIERAVLLTRGNVL--------------------------------------------Q 618 N IER L+ G + + Sbjct: 451 NCIERTATLSAGTSIVRSDFACSQGQCLSTTLWKSTSYGKTDPAAPMQPVPAKSIIPLAE 510 Query: 619 LSLPDIVLPEPET--PPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTT 676 + P + EP + P +V+ + + +V ++++ V A AA+ LGL Sbjct: 511 TAPPPQAVCEPGSLAPSGTVLVSGARMADRERVVAAMEKSGWVQA---KAARLLGLTPRQ 567 Query: 677 LLSRMKRLGIDKSAL 691 + +++ GI+ Sbjct: 568 VGYALRKYGIEIKRF 582 >UniRef50_A0L6X2 Transcriptional regulator, NifA, Fis Family n=6 Tax=Proteobacteria RepID=A0L6X2_MAGSM Length = 550 Score = 508 bits (1309), Expect = e-142, Method: Composition-based stats. Identities = 164/526 (31%), Positives = 258/526 (49%), Gaps = 33/526 (6%) Query: 186 NFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDK 245 L + + ++ ++ V + + + I L +L + + H ++ Sbjct: 28 QLEALYQVGRILAEEGNLTAVLDGVLEAVEKMGGMSKSIITLSDPETGRLLVRAVHDSNE 87 Query: 246 QH--PAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLL 303 + + + ++ + L + + L D + Sbjct: 88 GFAPLGGDDIVYRPGEGVMGSIMQNGNTFICELPANEQRFLHRLGLLDPTLP----FIGV 143 Query: 304 PLMSGDTMLGVLKLA-QCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRL--KERL 360 PL +GVL + F + L +A V+ V + Y+++ L + + Sbjct: 144 PLFLDAKPIGVLAAQPVFGNRAFLREQAHFLEMVANLVSQKVRSNQRYEQLQALLSSQAV 203 Query: 361 VDENLALTEQLNNVDSEFGE---IIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKEL 417 A++ + + G ++G++ +M V+ AQ DSTVL+LGE+GTGKEL Sbjct: 204 GRSTTAMSTAIRIENERSGMQPVLLGKAASMKQVVNMALKAAQFDSTVLVLGESGTGKEL 263 Query: 418 IARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSL 477 +A +H S R +R VK+NCA++ LLES+LFGHE+GAFTGA A R GRFE+AD +L Sbjct: 264 VANTVHYNSARASRPFVKVNCASLSDNLLESELFGHEKGAFTGAIATRKGRFEMADGGTL 323 Query: 478 FLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSD 537 FLDE+G++ Q KLLRVLQE EFER+G + I+ +VR++AATNRDL V FR+D Sbjct: 324 FLDEIGEISPSFQAKLLRVLQEGEFERVGGARTIKVNVRVVAATNRDLSAEVQKGNFRAD 383 Query: 538 LYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGN 597 L+YRL+V PI +P LRER ED+PLL +A +I+ + R + SI E LR L EW GN Sbjct: 384 LFYRLHVLPIEIPALRERMEDLPLLTEALLERISTKQHRPL-SITKEALRRLMMYEWAGN 442 Query: 598 VRELENVIERAVLLTRGNVLQLSLPDIVLPEPETP-----------------PAATVVAL 640 VRELEN +ERA +L+ + S P P++ ++ Sbjct: 443 VRELENCLERAAVLSDEGHIDASHIIFSSGANREPMPALTNHRIHNASSCALPSSADLSD 502 Query: 641 EGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 +E + ++ L+++ V A AA+ LG+ + R+K L I Sbjct: 503 PTLEERERVMGALEQSGWVQA---KAARLLGMTPRQVAYRIKILNI 545 >UniRef50_Q06065 Acetoacetate metabolism regulatory protein atoC n=32 Tax=Proteobacteria RepID=ATOC_ECOLI Length = 461 Score = 508 bits (1309), Expect = e-142, Method: Composition-based stats. Identities = 161/423 (38%), Positives = 231/423 (54%), Gaps = 23/423 (5%) Query: 288 MLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIA---- 343 + D + + +P M G L ++ + V T + E + Sbjct: 43 LFADIHPDVVLMDIRMPEMDGIKALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDY 102 Query: 344 VDNALAYQEIHRLKER------LVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEM 397 V E++ + +R + E L + L + ++G I+ S AM + K Sbjct: 103 VIKPFDLDELNLIVQRALQLQSMKKEIRHLHQAL-STSWQWGHILTNSPAMMDICKDTAK 161 Query: 398 VAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGA 457 +A S ++VLI GE+GTGKELIARAIH S R +K+NCAA+P LLES+LFGHE+GA Sbjct: 162 IALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGA 221 Query: 458 FTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRL 517 FTGA R G FE A++ +L LDE+G+MPL LQ KLLR+LQE+EFER+G ++ I+ D+R+ Sbjct: 222 FTGAQTLRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRI 281 Query: 518 IAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRN 577 IAATNRDL+ MV + FR DL+YRLNV + LPPLR+R EDI LLA F K + R+ Sbjct: 282 IAATNRDLQAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRD 341 Query: 578 IDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATV 637 I I + L+ WPGN+REL NVIERAV++ G ++ + +P Sbjct: 342 IIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMNSGPIIFSEDLPPQIRQPVCNAGEVK 401 Query: 638 VALEGE---------DEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDK 688 A GE E ++I+ VL++ G A LG+ R L+ +++ GID Sbjct: 402 TAPVGERNLKEEIKRVEKRIIMEVLEQQEG---NRTRTALMLGISRRALMYKLQEYGIDP 458 Query: 689 SAL 691 + + Sbjct: 459 ADV 461 >UniRef50_Q8Z333 Transcriptional regulatory protein zraR n=36 Tax=Proteobacteria RepID=ZRAR_SALTI Length = 441 Score = 508 bits (1308), Expect = e-142, Method: Composition-based stats. Identities = 158/383 (41%), Positives = 229/383 (59%), Gaps = 8/383 (2%) Query: 306 MSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERV-AIAVDNALAYQEIHRLKERLVDEN 364 M G L +K + T + + E + A A+D + + RL+E L Sbjct: 62 MDGIATLKEIKALNPAIPILIMTAFSSVETAVEALKAGALDYLIKPLDFDRLQETLEKAL 121 Query: 365 LALTE---QLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARA 421 E +L + + +IG S AM +L ++ MVA SD+TVLI G++GTGKEL+ARA Sbjct: 122 AHTRETGAELPSASAAQFGMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARA 181 Query: 422 IHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDE 481 +H S R+++ +V +NCAA+ LLES+LFGHE+GAFTGA +R GRF AD +LFLDE Sbjct: 182 LHACSARSDKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 Query: 482 VGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYR 541 +GD+ +Q +LLR +QE+E +R+GSN+ I DV LIAAT+RDL + V+ FR DLYYR Sbjct: 242 IGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVWLIAATHRDLAEEVSAGRFRQDLYYR 301 Query: 542 LNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVREL 601 LNV I +P LR+R EDIPLLA F + A R + + + + L + +WPGN+REL Sbjct: 302 LNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKAVKGFTPQAMDLLIHYDWPGNIREL 361 Query: 602 ENVIERAVLLTRGNVL-QLSLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVV 660 EN IERAV+L G + + LP + P + + + E ++I+ L++T G Sbjct: 362 ENAIERAVVLLTGEYISERELPLAIAATPIKAENSAEIQPLVDVEKEVILAALEKTGG-- 419 Query: 661 AGPKGAAQRLGLKRTTLLSRMKR 683 AA++LG+ R TLL+++ R Sbjct: 420 -NKTEAARQLGITRKTLLAKLSR 441 >UniRef50_Q2IQM1 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Myxococcales RepID=Q2IQM1_ANADE Length = 485 Score = 508 bits (1308), Expect = e-142, Method: Composition-based stats. Identities = 166/459 (36%), Positives = 240/459 (52%), Gaps = 20/459 (4%) Query: 240 THYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQT 299 + + ++ + R S+E + E D +L + Sbjct: 5 SVGARPGKERILVVDDEQNARVALRTILSEEGY--EIAEAADGEEALALLPGFAPAAVLA 62 Query: 300 LCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALA---------- 349 +P M G +L + + T + E + +N L Sbjct: 63 DVRMPRMDGINLLRRAREQGSDAVFVMMTAFASVEAAVEAMRAGAENYLVKPLDVNAVLV 122 Query: 350 YQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILG 409 E K RL + L E++ F I+G + +++V + V+ A + +TVLILG Sbjct: 123 VLEKALEKLRLQRDTANLRERVRE-RYRFHNIVGDAPELHAVYEVVKRAAPTRATVLILG 181 Query: 410 ETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRF 469 E+GTGKEL A+A+H S R ++ +K+NCAA+ LLES+LFGHE+GAFTGA ++ GRF Sbjct: 182 ESGTGKELFAQALHEESPRADKAFIKVNCAALSETLLESELFGHEKGAFTGAIGRKEGRF 241 Query: 470 ELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMV 529 ELAD +LFLDE+GD+ LQ KLLRVLQ++EFER+G + ++ DVRL+AATNRDL V Sbjct: 242 ELADGGTLFLDEIGDISPALQIKLLRVLQQREFERVGGTQTLKVDVRLVAATNRDLAAEV 301 Query: 530 ADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTL 589 + FR DLYYRLNV + LPPLR+R DIP L F K ++ G++I + TL + Sbjct: 302 KNGRFREDLYYRLNVVAVTLPPLRQRKGDIPALVSHFIDKYSKAYGKDIRGLAPGTLNAV 361 Query: 590 SNMEWPGNVRELENVIERAVLLTRGNVLQL-SLPDIV---LPEPETPPAATVVALEGEDE 645 + +WPGNVRELENV+ERAV+L +G+ L LP + P P A A E E Sbjct: 362 LSHDWPGNVRELENVVERAVVLCKGSELTADDLPPTLRGPRPRERAPGALIPGATLYEIE 421 Query: 646 YQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRL 684 + I+R L+ G + AA+ LG+ + R+K Sbjct: 422 REAILRTLEMVGGSTS---RAAEILGISVRKIQYRLKEY 457 >UniRef50_C8WE21 Transcriptional regulator, NifA, Fis Family n=4 Tax=Alphaproteobacteria RepID=C8WE21_ZYMMN Length = 568 Score = 508 bits (1308), Expect = e-142, Method: Composition-based stats. Identities = 164/554 (29%), Positives = 254/554 (45%), Gaps = 64/554 (11%) Query: 190 LVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQHPA 249 L I+ + + ++ L+ V + + D+D I + + Sbjct: 27 LYEISKILCAPMETVTLIKRVISVLESFIDLDHAIIAFFDEDQEAEILV---GAKSDQQG 83 Query: 250 HEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGD 309 + + ++ K ++I +D R NQ + +P++ D Sbjct: 84 AKIYFDSIPEQIVGQIVTGKMPVIIRDISKDPYFSNSRSHI-WHINQKSCVIGVPILDRD 142 Query: 310 TMLGVLKLAQC-----EEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDEN 364 + G+L + + E + + LL +A + A +Q I R E L+ ++ Sbjct: 143 KVSGILLIDRPTPRNEREALAPDRDARLLSMVAALLG---QTARLHQMIRREHEFLLRQS 199 Query: 365 LALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHN 424 Q D IIG S + S+L+++ ++A+++ TVL+ GE+GTGKEL A+AIH Sbjct: 200 SHTAPQ-QAEDMPHPRIIGDSPIIRSILEKINLIAKNNVTVLLRGESGTGKELFAQAIHQ 258 Query: 425 LSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGD 484 S R +K+NCAA+P +LES+LFGHE+GAFTGA+ R GRFELAD +LFLDE+G+ Sbjct: 259 ASPRKGLPFIKLNCAALPESVLESELFGHEKGAFTGAAQMRKGRFELADGGTLFLDEIGE 318 Query: 485 MPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNV 544 + Q KLLRVLQE EFER+G K ++ +VR+IAATN +L++ V+ FR+DLYYRL+V Sbjct: 319 ISPNFQAKLLRVLQEGEFERVGGTKTLKVNVRVIAATNVNLEEAVSRGNFRADLYYRLSV 378 Query: 545 FPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENV 604 PI LPPLRE P DIPLLAK F + +I L LS+ +PGN+RELEN Sbjct: 379 IPIFLPPLREHPSDIPLLAKEFLRHFNLE-NKTHLTIDQNALDVLSHCYFPGNIRELENC 437 Query: 605 IERAVLLTRGNVLQLSL-------------------------------------PDIVLP 627 I R L R + P Sbjct: 438 IRRTATLARNTEITAEDFTCYNDNCLSSIFWHREEEKTPHVCKNHGSEGEISECPSAQHC 497 Query: 628 EPETP----------PAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTL 677 + + P E + + ++ +++ V A AA+ LG+ + Sbjct: 498 QAASNAESDKTDLAFPKEKTTQSEFRSQKEQLIDAMEQAGWVQA---KAARILGMTPRQI 554 Query: 678 LSRMKRLGIDKSAL 691 +++ GI Sbjct: 555 GYALRKNGISIKKF 568 >UniRef50_C0QC42 Putative transcriptional activator n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QC42_DESAH Length = 922 Score = 507 bits (1307), Expect = e-142, Method: Composition-based stats. Identities = 187/500 (37%), Positives = 270/500 (54%), Gaps = 25/500 (5%) Query: 188 RILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQH 247 R I VLS D++EL++ K + + + + K + + H L + Sbjct: 446 RFTEMIDELVLSN-DLNELLTHTVKATNRFLGAERGGVFWFE-DKKTPRLIAAHNLFESD 503 Query: 248 PAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMS 307 ++ S E++ H+ L + +++ G + + + +P Sbjct: 504 INNKTFR------------SSLELIFKAFHDNTPLIKHCKVVETLVG-RTKAMLAVPFEV 550 Query: 308 GDTMLGVLKLAQCE-EKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLA 366 T G+L + F+ N N L +A ++ V++ L L R+ ++ Sbjct: 551 KGTAKGILYHDNAYIDDCFSYFNKNELAGMASYLSKYVNHLLN------LTRRIEEKTSK 604 Query: 367 LTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS 426 +L + E II +S M LKQV+ +A +DSTVLILGETG GKELIAR IH S Sbjct: 605 NYTRLGEISGE--NIIYQSLIMKKKLKQVDKIAGTDSTVLILGETGVGKELIARRIHERS 662 Query: 427 GRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMP 486 R + +V ++ ++P L+ES+LFGHE+GAFTGA QR GR ELA K +LF+DEVG++P Sbjct: 663 LRKDYPLVVVDPTSIPETLIESELFGHEKGAFTGADKQRTGRVELAHKGTLFIDEVGEIP 722 Query: 487 LELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFP 546 L +Q KLLR LQE+ RLG + I +D RLIAATNRDL+K VA FR DL+YRLNV P Sbjct: 723 LSIQVKLLRALQEKTIVRLGGSTTIHSDFRLIAATNRDLQKEVAKGNFREDLFYRLNVIP 782 Query: 547 IHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIE 606 I +PPLR+R EDI L+A+ F K + E L WPGN+REL N+IE Sbjct: 783 IEIPPLRKRGEDILLIAEYFLKKFRMKYNFPTIEFTPENKVMLIEYNWPGNIRELNNIIE 842 Query: 607 RAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGA 666 RAVLL+ + L++ L +L+ E + + I VL+E NG + GP GA Sbjct: 843 RAVLLSEEDQLEIELKTKNNSSHPDDFFRDRPSLD-EMQRRYIGTVLEECNGQIGGPGGA 901 Query: 667 AQRLGLKRTTLLSRMKRLGI 686 A+RLG+KRT+L +RM+ LG+ Sbjct: 902 AERLGMKRTSLYARMRTLGM 921 >UniRef50_C0GRG2 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GRG2_9DELT Length = 464 Score = 507 bits (1307), Expect = e-142, Method: Composition-based stats. Identities = 151/362 (41%), Positives = 219/362 (60%), Gaps = 13/362 (3%) Query: 331 NLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYS 390 +L + AV+ E+ RL +L L E+ S F I+G S M + Sbjct: 104 AVLSDDQGQTMGAVEIVTDISEMDRLDRQLRQLTRTLDEE-----SSFQGIVGHSRQMKN 158 Query: 391 VLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDL 450 + + VE AQSD V I GE+GTGKEL+A+AIHNLS R + +++NCAA+ LLES+L Sbjct: 159 LFELVEKAAQSDFPVFICGESGTGKELVAQAIHNLSPRAEQPYIQVNCAALNESLLESEL 218 Query: 451 FGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKI 510 FGH +GAFTGA R GRFE A K +FLDE+GD+P+ +Q KLLRVL+ + FER+G N+ Sbjct: 219 FGHVKGAFTGALQHRKGRFEAAHKGDIFLDEIGDLPMAMQVKLLRVLETKTFERVGDNRT 278 Query: 511 IQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKI 570 I D+R I ATN++L ++A FR DL+YR+NV PIHLPPLRER ED+P L F ++ Sbjct: 279 ISVDLRFITATNKNLPDLIARGGFREDLFYRINVIPIHLPPLRERKEDVPHLVDFFIKRL 338 Query: 571 ARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLS-LPDIVLPEP 629 +R+ +NI + E +R WPGNVREL++ +E + +L G+ ++ LP+ + Sbjct: 339 SRKNKKNIQGLSPEAMRIFMQYSWPGNVRELKSALEYSYVLAEGDRIRSENLPEYLKDGG 398 Query: 630 ETPPAATVVALEGED----EYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLG 685 A + E+ + Q ++ LK+++G AA+ LG+ R T+L+RM++ G Sbjct: 399 NDFQAVDLPPAPAENLQQRQKQELIEALKQSSG---NKSQAARLLGINRVTVLNRMRKYG 455 Query: 686 ID 687 ID Sbjct: 456 ID 457 >UniRef50_D2TTF4 Two-component system response regulator n=3 Tax=Proteobacteria RepID=D2TTF4_CITRO Length = 441 Score = 507 bits (1306), Expect = e-142, Method: Composition-based stats. Identities = 158/383 (41%), Positives = 229/383 (59%), Gaps = 8/383 (2%) Query: 306 MSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAI-AVDNALAYQEIHRLKERLVDEN 364 M G L +K V T + + E + A+D + + RL+E L Sbjct: 62 MDGIETLREIKALNPAIPVLIMTAFSSVETAVEALKTGALDYLIKPLDFDRLQETLEKSL 121 Query: 365 LALTE---QLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARA 421 E +L +V + ++G+S AM +L ++ MVA SD+TVLI G++GTGKEL+ARA Sbjct: 122 AHAQEVAGELPSVSASQSGMVGKSPAMQQLLSEIAMVAPSDATVLIHGDSGTGKELVARA 181 Query: 422 IHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDE 481 +H S R+++ +V +NCAA+ LLES+LFGHE+GAFTGA +R GRF AD +LFLDE Sbjct: 182 LHASSARSDKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 Query: 482 VGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYR 541 +GD+ +Q +LLR +QE+E +R+GSN+ + DVRLIAAT+RDL + + FR DLYYR Sbjct: 242 IGDISPLMQVRLLRAIQEREVQRVGSNQTLSVDVRLIAATHRDLAQEASAGRFRQDLYYR 301 Query: 542 LNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVREL 601 LNV I P LR+R EDIPLLA+ F + A R + + + + L + WPGN+REL Sbjct: 302 LNVVTIETPSLRQRREDIPLLAEHFLQRFAARNRKAVKGFTPQAMDLLIHYAWPGNIREL 361 Query: 602 ENVIERAVLLTRGNVL-QLSLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVV 660 EN IERAV+L G + + LP + + A + E E ++I+ L++T G Sbjct: 362 ENAIERAVVLLTGEYISERELPLAIANQAMPLMPAQAIQPLVEVEKEVILAALEKTGG-- 419 Query: 661 AGPKGAAQRLGLKRTTLLSRMKR 683 AA++LG+ R TLL+++ R Sbjct: 420 -NKTEAARQLGITRKTLLAKLSR 441 >UniRef50_Q027A1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q027A1_SOLUE Length = 450 Score = 507 bits (1305), Expect = e-142, Method: Composition-based stats. Identities = 167/400 (41%), Positives = 225/400 (56%), Gaps = 19/400 (4%) Query: 303 LPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERV-AIAVDNALAYQEIHRLKE--- 358 LP M G L +++ V T + E + A A D L + L + Sbjct: 54 LPNMDGQEFLSLIRRQNSHVPVVMMTAFGNVETAVEAMKAGATDFLLKPFSLDHLMQVVD 113 Query: 359 ------RLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETG 412 L +EN L L EF I+GRS AM + +E V S +TVL+ GE+G Sbjct: 114 KALEVRALREENRELKAALGR-RYEFDNIVGRSPAMQEIFAAIERVGPSRATVLLTGESG 172 Query: 413 TGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELA 472 GK+LIARAIH S R +R +VK+NC A+P L+ES+LFG+E+GAFTGA + G+FE A Sbjct: 173 VGKDLIARAIHFHSPRKDRPLVKINCTAIPENLMESELFGYEKGAFTGAQTTKPGKFEQA 232 Query: 473 DKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADR 532 D ++FLDE+GD+P +Q KLLRVLQE+EFERLGSN DVRL+AATN+DL+ + Sbjct: 233 DTGTVFLDEIGDVPAAIQVKLLRVLQEREFERLGSNVTRHIDVRLVAATNQDLRAALEQG 292 Query: 533 EFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNM 592 FR DLYYRLNV P+++PPLRER DIP LA F K+A G ++SI + L Sbjct: 293 TFREDLYYRLNVVPLNIPPLRERKVDIPFLANHFVHKLAPDTGCQVESITDAGMEKLMAY 352 Query: 593 EWPGNVRELENVIERAVLLTRGNVLQLSLPDI-VLPEPETPPAATVVALEG----EDEYQ 647 WPGNVRELENVIER++++ G L + P P EG + E + Sbjct: 353 HWPGNVRELENVIERSLVMATGTQLDADDIKLESAPRPRAQGNDNHFLPEGLSLDQYEQE 412 Query: 648 LIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 +I L+ +G AA+ LGL R L R+ ++G++ Sbjct: 413 IIREALRRADG---NKSQAARLLGLTRNALRYRLTQMGLE 449 >UniRef50_Q1PZT5 Strongly similar to sigma 54 response regulatory protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZT5_9BACT Length = 448 Score = 507 bits (1305), Expect = e-142, Method: Composition-based stats. Identities = 150/398 (37%), Positives = 220/398 (55%), Gaps = 17/398 (4%) Query: 301 CLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALA----YQEIHRL 356 +P+M+G L +K + +V T + + + + + L +E+ L Sbjct: 56 MNMPVMNGIETLKKVKTIEPTTEVIILTGQGSIENAVQAIKLGAYDYLTKPCQLKELDLL 115 Query: 357 ------KERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGE 410 K +L EN L +++V +IG S A+ +V K ++ A SD TVLI GE Sbjct: 116 LQRALEKRKLSRENFHLKTLVHDVQKP-SSMIGNSPAIKAVFKMIDKTAPSDVTVLIQGE 174 Query: 411 TGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFE 470 +GTGKEL A+ IH S R ++ V +NCA + LLES+LFGH +GAFTGA+ R+G FE Sbjct: 175 SGTGKELAAKMIHQYSKRADKPFVIVNCATLQESLLESELFGHVKGAFTGAAESRVGLFE 234 Query: 471 LADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVA 530 +A+ +LFLDE+G++ + Q KLLRV+Q E R+G N++I D R+IAAT+++L V Sbjct: 235 IAEGGTLFLDEIGELTVNTQAKLLRVIQSGEIRRVGDNRVITVDARIIAATHKNLPLEVK 294 Query: 531 DREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLS 590 + FR DLY+RLNV + LP LRER +D+ L + F K + G + E L ++ Sbjct: 295 EGRFREDLYFRLNVITLRLPSLRERKDDLTALIQHFLQKFCK--GERTMDMHPEALHAMT 352 Query: 591 NMEWPGNVRELENVIERAVLLTRGNVLQL-SLPDIVLPEPETPPAATVVALEGEDEYQLI 649 +WPGN+RELEN IER V+L GN++ + LPD + E E I Sbjct: 353 LYDWPGNIRELENTIERTVVLADGNIISIEELPDNIRGRTYEHYGKNGEIALSEVEKNHI 412 Query: 650 VRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 ++VLKE N AA+ LG+ TL ++MK ID Sbjct: 413 IQVLKEKNWH---KPLAAKTLGISLKTLYNKMKMYNID 447 >UniRef50_A3ESE7 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Leptospirillum sp. Group II RepID=A3ESE7_9BACT Length = 473 Score = 506 bits (1304), Expect = e-142, Method: Composition-based stats. Identities = 164/421 (38%), Positives = 239/421 (56%), Gaps = 22/421 (5%) Query: 273 LINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTM--LGVLKLAQCEEKVFTTTNL 330 ++ E R + ++ Q + + + +G+ + + + + + N Sbjct: 67 ILKNREDSPTPSDCRKVVNSSECQARCVLAKTVETGEPIRNMEISLVDALGRRRVLRLNT 126 Query: 331 NLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYS 390 LL+ + +V V+ +I LKE L FG IIGRSE M Sbjct: 127 ALLKDSSGKVFGGVEIFHDISQIVALKEEL------------KGRYSFGRIIGRSEKMQE 174 Query: 391 VLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDL 450 + + ++AQS STVLI GE+GTGKEL+A A+H S R VK+NCAA+ G+LES+L Sbjct: 175 LFDLLPVIAQSKSTVLIEGESGTGKELVAHALHENSPRREGPFVKLNCAALSEGVLESEL 234 Query: 451 FGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKI 510 FGH +GAFTGA R GRFELA +LFLDE+G++ +Q KLLRVLQE+EFER+G K Sbjct: 235 FGHVKGAFTGAVQSRPGRFELASGGTLFLDEIGEISPSMQVKLLRVLQEEEFERVGGTKT 294 Query: 511 IQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKI 570 ++ DVR+IAATNRDLK+ + + FR DLYYRL V P+ LPPLRER D+PLL ++F + Sbjct: 295 VKVDVRVIAATNRDLKQAMEEGSFRKDLYYRLRVIPVTLPPLRERQGDLPLLIQSFIERY 354 Query: 571 ARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQL-SLPDIVLPEP 629 LG+NI + +E ++ L N +PGN+REL+N+IE A LL + + L LP +LP Sbjct: 355 NAELGKNIQGLTSEAMKVLLNYHYPGNIRELQNIIEHAALLCNDSRIDLRHLPGDLLPAQ 414 Query: 630 ETPPAATVVALEGE----DEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLG 685 + +E E +LI + E+ G V+ A++L + R+TL R+K + Sbjct: 415 SQSSFLELAMMEENPVRYVEKELIRLAMAESGGNVS---EVARKLSMGRSTLWRRLKEMK 471 Query: 686 I 686 + Sbjct: 472 L 472 >UniRef50_B8FIT8 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FIT8_DESAA Length = 588 Score = 506 bits (1304), Expect = e-141, Method: Composition-based stats. Identities = 148/338 (43%), Positives = 202/338 (59%), Gaps = 8/338 (2%) Query: 353 IHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETG 412 + R RLVD L E+ ++F IIG S M +V + +E +A ++TVLI GE+G Sbjct: 256 VIRDITRLVDLERELQER-----NQFHNIIGASHKMQAVYQLLENLADFETTVLITGESG 310 Query: 413 TGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELA 472 TGKEL+A+A+H+ R + V +NC+A+ LLES+LFGH +GAFTGA GRF+ A Sbjct: 311 TGKELVAKALHHTGSRAFKPFVSVNCSALAENLLESELFGHVKGAFTGAIRDYQGRFQAA 370 Query: 473 DKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADR 532 +L LDE+GD+ +Q KLLRVLQE+EFER+G + I+ DVR+IA TN+DLK+ V Sbjct: 371 HTGTLLLDEIGDISPRIQLKLLRVLQEREFERVGDVQPIKVDVRVIACTNQDLKEKVGLG 430 Query: 533 EFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNM 592 EFR DLYYRLNV I LPPLRER EDIPLLA FT + ++ I + + + N Sbjct: 431 EFREDLYYRLNVMEIKLPPLRERREDIPLLADHFTARFEKKFNITIPGVSDKVMNAFMNY 490 Query: 593 EWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGEDEYQLIVRV 652 WPGNVRELE+ IERA +L R ++ L + E + + DE I+ Sbjct: 491 HWPGNVRELEHSIERATVLCRDKMISLEHIPGEIAEAYSLSGPRLKKQPAADEPNEIIDA 550 Query: 653 LKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSA 690 LK T AA+ LG+ R T+ ++++ GI A Sbjct: 551 LKRTGW---NKAKAARLLGVSRKTIYRKIEKYGIQSPA 585 >UniRef50_Q1PYI3 Strongly similar to sigma 54 response regulatory protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYI3_9BACT Length = 448 Score = 506 bits (1304), Expect = e-141, Method: Composition-based stats. Identities = 164/401 (40%), Positives = 239/401 (59%), Gaps = 17/401 (4%) Query: 297 IQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALA------- 349 + T LP M G ++L +K + T + ++ V D LA Sbjct: 51 VITDMKLPGMGGLSLLQEIKKKNSSIAIVVVTAYSSIKSAVNAVKHGADEYLAKPVDVEE 110 Query: 350 ---YQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVL 406 E R K++LV +N L E+L + F E++G S M+ + K +E VA S ++VL Sbjct: 111 LELVLEKLREKQQLVIQNRLLKEELKD-KYTFSELVGGSPQMHRIFKMIEDVAPSTASVL 169 Query: 407 ILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRI 466 I+GETGTGKEL+A AIH S R + V ++CAA+ G+LES+LFGHE+GAFTGA R Sbjct: 170 IMGETGTGKELVAHAIHYRSERAGKPFVALHCAALSEGILESELFGHEKGAFTGAIQSRK 229 Query: 467 GRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLK 526 GRFELAD +LFLDE+ +M L++Q KLLRVL++ EFER+G K I+ DVR IAATNR+L+ Sbjct: 230 GRFELADGGTLFLDELAEMSLKVQVKLLRVLEKGEFERVGGEKTIKVDVRCIAATNRNLE 289 Query: 527 KMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETL 586 + V++ FR DL+YRLNV I +PPLRER +DIP+L+ F K A++ + I E + Sbjct: 290 EEVSEGRFREDLFYRLNVINIQMPPLRERKDDIPILSNYFAVKYAKKYKKEIKGFDPEAI 349 Query: 587 RTLSNMEWPGNVRELENVIERAVLLTRGNVLQL-SLPDIVLPEPETPPAATVV--ALEGE 643 + L + W GN+REL+N IERA++L + + + + LP+ ++P+ E P + E Sbjct: 350 KALLSHHWQGNIRELQNTIERAIVLCKSDTISVDHLPESIMPDNEYIPVIKIPIGTTLKE 409 Query: 644 DEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRL 684 E ++I R L+ TNG + AA+ LG+ + + K Sbjct: 410 AEKEIIQRTLQITNGS---KQSAAKILGISTRKIEYKTKEW 447 >UniRef50_Q2LUG8 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=6 Tax=Bacteria RepID=Q2LUG8_SYNAS Length = 456 Score = 506 bits (1303), Expect = e-141, Method: Composition-based stats. Identities = 163/404 (40%), Positives = 230/404 (56%), Gaps = 24/404 (5%) Query: 303 LPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERV-AIAVD---------NALAYQE 352 +P M G +L +K E V T + + + A AVD L + Sbjct: 57 MPGMDGMQVLQEVKRLNPETDVVIITAYGTIETAVDAMKAGAVDYITKPLEFDELLLLLD 116 Query: 353 IHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETG 412 + L+ EN L QL + II S+ M ++ VA S +TVL+ GE+G Sbjct: 117 RVAERRTLIRENEILRRQLKDQGVTTDAIIFTSQKMAALTSMAARVASSRATVLLQGESG 176 Query: 413 TGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELA 472 TGKEL+AR IH LS R+ R ++ +NC A+P L+ES+LFGHE+GAFTGA+++RIGRFE A Sbjct: 177 TGKELLARLIHQLSPRSTRPIITVNCGALPESLIESELFGHEKGAFTGATSRRIGRFEEA 236 Query: 473 DKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADR 532 D +LFLDE+G++ + +Q KLLR LQE+EF+R+G N I+ DVR+I+ATNRDL+ MV + Sbjct: 237 DGGTLFLDEIGELTMPVQVKLLRFLQEREFQRVGGNTNIRADVRIISATNRDLETMVKEE 296 Query: 533 EFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNM 592 +FR DLYYRLNV + +PPLRER EDIP L F + A G+ I I +E L Sbjct: 297 KFREDLYYRLNVVVMSIPPLRERREDIPALIDHFLERFAAENGKKISGISSEARDLLMKY 356 Query: 593 EWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGE--------- 643 ++PGNVRELEN+IERAV++ R ++ + D+ E + V EGE Sbjct: 357 DYPGNVRELENIIERAVVIARNEIIYME--DLPFREDTLVATSGGVPEEGEGRLRGAIEN 414 Query: 644 DEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 E Q+I +++ AA+ LGL L ++K+ G+ Sbjct: 415 LEKQMIQDAMEKAG---DHQTRAAEMLGLSERMLRYKLKKYGLK 455 >UniRef50_Q4K714 Sigma-54 dependent DNA-binding response regulator n=6 Tax=cellular organisms RepID=Q4K714_PSEF5 Length = 465 Score = 506 bits (1303), Expect = e-141, Method: Composition-based stats. Identities = 163/436 (37%), Positives = 245/436 (56%), Gaps = 41/436 (9%) Query: 287 RMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIA--------- 337 ++L + + + +P M G +LG +K + V T + ++ Sbjct: 40 KVLEQEDIDLVISDWRMPGMDGPQLLGEIKQRYPQLPVIVMTAYSTVKNAVQSMRNGAYD 99 Query: 338 --------ERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMY 389 + + I V AL +++I + +R+ E + ++G S A Sbjct: 100 YIAKPFDIDELDITVSKALQFRDILKDNQRMRAELAE--------HQQIDSLVGDSPAFR 151 Query: 390 SVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESD 449 VL+ V+ V +S++T+L+ GE+GTGKE++ARAIH R ++ V +NCAA+P GLLES+ Sbjct: 152 RVLQAVDSVRESNATILLTGESGTGKEMVARAIHKHGNRADKPFVAVNCAAIPEGLLESE 211 Query: 450 LFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNK 509 +FGH +GAFTGA A R+GRF+ ADK +LFLDEVGDMPL LQ K+LR LQE+ E +G + Sbjct: 212 MFGHRKGAFTGAVADRVGRFQQADKGTLFLDEVGDMPLALQAKILRALQERVIEPVGDPR 271 Query: 510 IIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFK 569 + DVR+IAATN++L + VA++EFR DLYYRLNVFPI LP LRER EDI LLA+ F Sbjct: 272 ERKVDVRVIAATNKNLLEAVANKEFREDLYYRLNVFPIPLPALRERVEDIALLARHFAHS 331 Query: 570 IARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEP 629 + G+ I E L+ +++ WPGN+REL+N +ERA ++ G V++ L P Sbjct: 332 LGATAGKRISGFSPEALQAMASYAWPGNIRELQNCVERATIVATGQVIEEKDLPGYLFGP 391 Query: 630 ETPP-------------AATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTT 676 + + + A E E I+ L+++NGV A AAQ +G+ + Sbjct: 392 QAQGTESSAAISVGPQVPSDLEAALAEVEKAYILAALQQSNGVQA---AAAQLIGISERS 448 Query: 677 LLSRMKRLGIDKSALI 692 R+K+LGI ++ Sbjct: 449 FWYRLKKLGIQVDKIV 464 >UniRef50_C9KM56 Sigma-54 dependent transcriptional regulator/sensory box protein n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KM56_9FIRM Length = 560 Score = 505 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 172/563 (30%), Positives = 278/563 (49%), Gaps = 40/563 (7%) Query: 148 KEFNRLQTFTQIVSVVTEQIQSRVVNNVDYELLCRERDNFRILVAITNAVLSRLDM---- 203 E ++ +++ R ++ ER L+ + +++ D Sbjct: 13 DEGGIHARVAAMIVQRAQELCERYDCHLYIRSERSERCEMHSLMKLVALKVAQGDSVFVS 72 Query: 204 ------DELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQHPAHEQSEVDE 257 + V E+ + + F +++ S + + L ++ V + Sbjct: 73 SEGDNGRQAVIEMVRFLESDFIMNEAS-----EIHGVDKLLHENALMQERLQMILESVQD 127 Query: 258 AGTLTERVFKSKE--MLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVL 315 + +R + + + + + +F+T + + L SG +G + Sbjct: 128 GICVVDRSGEVTYVNPSYLRIVHKTPEMVVGQNVFETAADGNRCAV---LRSGIARIGSI 184 Query: 316 KLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVD---ENLALTEQLN 372 + + + N + +A V EI L ERL + L ++L Sbjct: 185 RHKKDGTTIVANVNPIF---VDGEIAGVVSVIKDITEIQTLMERLSQVSAKAEYLEQELL 241 Query: 373 NVDSE---FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRN 429 F IG+S + VL A S + VLI GE+GTGKE+IA IH SGR Sbjct: 242 RTKKTAQAFANYIGKSGKVVDVLALASKAADSSANVLIRGESGTGKEVIAEGIHYASGRR 301 Query: 430 NRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLEL 489 +++NC A+P LLES+LFGHE+GAFTGA +++G+FELA+ ++FLDE+G++ L Sbjct: 302 RGPFIRVNCGAIPGALLESELFGHEKGAFTGAVRRKLGKFELANHGTIFLDEIGELDKNL 361 Query: 490 QPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHL 549 Q KLLRVLQ++EF+R+G + I DVR+IAATNRDL+ MV + FR DLYYRLNV PI L Sbjct: 362 QVKLLRVLQQKEFDRVGGEETIHVDVRIIAATNRDLEAMVREGTFRDDLYYRLNVIPIIL 421 Query: 550 PPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAV 609 PPLR+RP+DIPLL + F KI++ +++ I + ++ + WPGNVRELENVIER + Sbjct: 422 PPLRDRPDDIPLLVEHFIEKISKENKKDVRGITPDAMQMFMHYRWPGNVRELENVIERVI 481 Query: 610 LLTRGNVLQLSLP------DIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGP 663 L +++ ++ DI E ++ TV+ E E E Q+I L++ G Sbjct: 482 TLMDTDLITAAMLPSYIKGDIAGREVQSLADDTVLPWE-EYEKQIIANALRQ--GTSFN- 537 Query: 664 KGAAQRLGLKRTTLLSRMKRLGI 686 GAA+ L + T+ ++ ++ G+ Sbjct: 538 -GAAKLLRISHKTVAAKARKYGL 559 >UniRef50_Q3ABV5 Sigma-54 dependent transcriptional regulator n=3 Tax=Bacteria RepID=Q3ABV5_CARHZ Length = 732 Score = 505 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 155/358 (43%), Positives = 204/358 (56%), Gaps = 14/358 (3%) Query: 341 AIAVDNALAYQE--IHRLKERLVDENLALT---EQLNNVDSEFGEIIGRSEAMYSVLKQV 395 AIAV LA + + L ++ E E N I G++E + V K + Sbjct: 377 AIAVYQGLAEIDMCLPFLLKKTRGEAEFYRNKYEMENRKKYYLDGITGQTEKIIEVKKLI 436 Query: 396 EMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHER 455 E A SD VLI GE+G GKE+ AR IH LS R ++ V +NCAA+P LLES+LFG+E Sbjct: 437 EKAAMSDGNVLIQGESGVGKEIAARTIHYLSERADKPFVAINCAAIPENLLESELFGYEE 496 Query: 456 GAFTGASAQ-RIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTD 514 GAFTGA + G+ E AD +LFLDE+GDMPL +Q KLLR +Q +EFER+GSN + D Sbjct: 497 GAFTGAKRGGKAGKIEQADGGTLFLDEIGDMPLSMQVKLLRFIQNREFERIGSNTPRKVD 556 Query: 515 VRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRL 574 +R+IAATN+ L K+V + FR DLYYRLNVF I++PPLRER +DIPLL F + R Sbjct: 557 IRIIAATNQPLAKLVKEGRFRMDLYYRLNVFNINIPPLRERRDDIPLLVNRFMNEFCERR 616 Query: 575 GRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPA 634 + +E + L N WPGN+REL+NVIERA L GN+++ L Sbjct: 617 KMAPKIVTSEAMNILMNYSWPGNIRELQNVIERAYYLAEGNLIKPEHLPAQLTSKALSGE 676 Query: 635 -----ATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 T E E +LI+ LK TN A+ LG+ R TL ++K GI+ Sbjct: 677 RITKITTFKEAVAEVEKKLIIEGLKATN---YNKLACAKLLGIPRATLYQKIKEYGIE 731 >UniRef50_B8GQ33 NifA subfamily transcriptional regulator n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GQ33_THISH Length = 547 Score = 505 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 166/537 (30%), Positives = 263/537 (48%), Gaps = 41/537 (7%) Query: 184 RDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYL 243 + ++ I + LD V + + + ++ ++ L + ++ L Sbjct: 13 KQQLSVIQEIAKLLDRPLDPPRTVQSILRLLSQMLGLNCGRVLAPDSSGLVLEVKYSYGL 72 Query: 244 DKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLL 303 A V +T V ++ + L+ +++ L + + Sbjct: 73 THARLAQGAFSVGYHEGVTGFVMRTGTIGLVTDIDQEPLYLQRITERSGGSHSPIAFIAV 132 Query: 304 PLMSGDTMLGVLKLAQCE-EKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVD 362 P++ T +GVL + + +++ +LR A + + Q +++ E L+ Sbjct: 133 PILESGTPIGVLSVQREGIRHRAFDSDIAVLRVAASAIGQVM---RIRQFLNQQTEHLMQ 189 Query: 363 ENLALTEQLNN----VDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELI 418 EN +L + S IIG SE++ +KQ VA S++ V++LGE+GTGKE Sbjct: 190 ENQSLKNSIVMEGMLQKSLSHGIIGSSESLMKAVKQCMQVAHSEAPVMLLGESGTGKEKF 249 Query: 419 ARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLF 478 AR IH S R+ V +NCAA+P LLE++LFG+E+G+FTGA+ + G+ LAD +LF Sbjct: 250 ARMIHQQSDRSEHPFVCINCAAIPPDLLEAELFGYEKGSFTGANGAKKGKIMLADGGTLF 309 Query: 479 LDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDL 538 LDE+GDMPL+LQ KLLRVLQE++ + +GS + + + RLI AT+ ++++ V FR DL Sbjct: 310 LDEIGDMPLQLQAKLLRVLQERQVDPIGSTRGVPVNFRLITATHVNMQEHVNAGHFRLDL 369 Query: 539 YYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNV 598 +YRLNV P++LPPLR R EDI LA F ++ R RNI ++ L L WPGNV Sbjct: 370 FYRLNVVPVYLPPLRTRHEDIRPLALHFLNELNHRYRRNI-TLHPAALHVLERYSWPGNV 428 Query: 599 RELENVIERAVLLTRGNVLQ-------------LSLPDIVLPEPETPPAATVVALEGE-- 643 R+L+NV+ERA+L+ V+ + LP P A + GE Sbjct: 429 RQLQNVLERAMLMVEDEVIDQEQMTRILAEQSAVKLPKQGPDRPVEAGMAEERGVRGEAF 488 Query: 644 --------------DEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 D+ Q I L++T G GAA+ L L L RM++LG+ Sbjct: 489 LTGAMPRAYQWVHQDDAQRIRNALEQTRG---NQAGAARLLNLTTRQLRYRMEKLGL 542 >UniRef50_C1ZGY0 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZGY0_PLALI Length = 675 Score = 505 bits (1301), Expect = e-141, Method: Composition-based stats. Identities = 168/503 (33%), Positives = 270/503 (53%), Gaps = 28/503 (5%) Query: 198 LSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQHPAHEQSEVDE 257 LS + ++ L++ + I + S+ S ++L++ + + Q P H Sbjct: 186 LSEIVLEGLLNASSATIGAILLM-SSSLAKNSGGNDQLSVVAYRAQNHQ-PYH-----PV 238 Query: 258 AGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKL 317 + +L++ V K +E +L DD L + + Q++ P+ + + + G++ L Sbjct: 239 SDSLSQIVLKDQEAVLARDISSDDRFLDRDSLGEI---EAQSVICAPVRTAEKVYGLIHL 295 Query: 318 AQCEE-KVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDS 376 + +L +A+++A ++ +++ +R EN L EQL + Sbjct: 296 YSTDNVSQLEVDDLEFTLAVADQMAAGLEQLQRVEKLQAGLQRAEVENQTLREQLRSEM- 354 Query: 377 EFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKM 436 ++IG S AM + ++ +A +D+T LI GE+G+GKELIARAIH S R + M Sbjct: 355 ---DLIGESPAMQQLKNRIARIAPTDATALIRGESGSGKELIARAIHLHSNRRGGPFITM 411 Query: 437 NCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRV 496 NCAA+ LLES+LFGHE+G+FTGA +++G+FE A + ++FLDEVG+M +Q K LRV Sbjct: 412 NCAALSESLLESELFGHEKGSFTGAVGRKLGKFEQAHQGTIFLDEVGEMSPGVQAKFLRV 471 Query: 497 LQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERP 556 L+ FER+G + DVR++AATNRDL+K V++ FR DLY+RL V + + PLR R Sbjct: 472 LEGHPFERVGGGDPVHADVRVVAATNRDLEKAVSEGTFRQDLYFRLQVVELVVEPLRRRK 531 Query: 557 EDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNV 616 DIPLLA F + AR++ RN+ ++ L +WPGNVREL++ IERAV+L Sbjct: 532 LDIPLLANYFLNRFARKMARNMVGFTPGAMQALIEYDWPGNVRELQHTIERAVILCPHEA 591 Query: 617 LQLSLPDI---------VLPEPETPPAATVVALEGE-DEYQLIVRVLKETNGVVAGPKGA 666 + + + V P + T AL E E Q I+ L+ T A Sbjct: 592 VGQADLHLSALGTTGKSVEPTRDISTRQTFEALPLEIVEQQHILATLEWTGW---NKSQA 648 Query: 667 AQRLGLKRTTLLSRMKRLGIDKS 689 AQ LG++R+TL ++KR +++ Sbjct: 649 AQILGIERSTLDRKLKRYDVERP 671 >UniRef50_A4J593 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J593_DESRM Length = 582 Score = 505 bits (1300), Expect = e-141, Method: Composition-based stats. Identities = 142/364 (39%), Positives = 225/364 (61%), Gaps = 17/364 (4%) Query: 337 AERVAIAVDNALAYQEIHRLKERL---VDENLALTEQLNNVDSE---FGEIIGRSEAMYS 390 + +V + EI +L + L + L +++ + + F ++IGRSEA+ Sbjct: 218 SGKVIGGLAVEKDITEIVQLNQELNKASTQVKLLEQEIRKISGQDCAFNKLIGRSEAIQK 277 Query: 391 VLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDL 450 ++ + ++ +++TVL+ GE+GTGKEL+ARAIH S R+ + +NC A+P L ES+L Sbjct: 278 LIVFGKKISVTEATVLLRGESGTGKELLARAIHQNSPRHMNPFIVVNCGAIPNNLFESEL 337 Query: 451 FGHERGAFTGASAQ-RIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNK 509 FG+E GAFTGA + + G FELA+ +LFLDEVG+MP+E+Q KLLRVLQE F R+G ++ Sbjct: 338 FGYEGGAFTGADRKGKPGMFELANGGTLFLDEVGEMPIEMQAKLLRVLQEGTFYRVGGSQ 397 Query: 510 IIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFK 569 + +VR++AAT+R+L+ M+ R+FR DLYYRLNV + +PPLR+R EDIP L F + Sbjct: 398 SVHVNVRVLAATHRNLEDMINRRQFREDLYYRLNVVALEIPPLRDRREDIPELVHLFMQE 457 Query: 570 IARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVL-QLSLPDIVLPE 628 ++ +NI I + + WPGNVREL+N +ER V+LT G+++ + +LP+ + Sbjct: 458 FCQKYDKNIKKIEPAVMTAFLDYTWPGNVRELKNAVERLVVLTDGDIIDEAALPENLRRN 517 Query: 629 ------PETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMK 682 ++ + E E QLI++ L++ G AA+ LG+ R+TL +++ Sbjct: 518 TYISLVTSPVSQGKLMNVAVEAEKQLILKTLQQVRG---NRSEAARVLGIPRSTLYYKLR 574 Query: 683 RLGI 686 +LGI Sbjct: 575 QLGI 578 >UniRef50_C5BI62 Transcriptional regulator, Fis family n=5 Tax=Gammaproteobacteria RepID=C5BI62_TERTT Length = 642 Score = 504 bits (1299), Expect = e-141, Method: Composition-based stats. Identities = 170/398 (42%), Positives = 237/398 (59%), Gaps = 28/398 (7%) Query: 304 PLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDE 363 P+++ T++G + + R I+ER+ A +E+ LK RL DE Sbjct: 260 PIIANSTIIGAVVV---------------FRDISERIETQRQLENALRELSELKARLEDE 304 Query: 364 NLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIH 423 N L ++ ++ + IIG + + +Q+E+VAQ+++ VL+ GE+GTGKELIA+AIH Sbjct: 305 NAYLQQE-YLIERNYHGIIGEGAGIKRIKQQIELVAQTEANVLVYGESGTGKELIAQAIH 363 Query: 424 NLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVG 483 S R ++ M+++NCAA+ L ES+ FGH +GAFTGA RIGRFELA+ +LFLDEVG Sbjct: 364 QASRRADKPMIRVNCAAIAHELFESEFFGHIKGAFTGALRDRIGRFELANGGTLFLDEVG 423 Query: 484 DMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLN 543 ++PLELQ KLLRVLQE + ER+G K + DVR+IAATNRDLK FR DLY+RLN Sbjct: 424 EIPLELQSKLLRVLQEGQLERVGEEKTREVDVRIIAATNRDLKAEADQGRFREDLYFRLN 483 Query: 544 VFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELEN 603 VFPI PLR+R EDI LLA + ++ + R + L+ L + WPGNVREL+N Sbjct: 484 VFPIQAVPLRDRREDIGLLAAHYLEQLCHKFPRQQCKLTQRDLKQLRDYAWPGNVRELQN 543 Query: 604 VIERAVLLTRGNVLQLSLPDI--------VLPEPETPPAATVVALEGEDEYQLI----VR 651 V+ERAV+ +R L L LP LP T L +D L+ + Sbjct: 544 VLERAVITSRAGRLNLDLPQHNHQDNAQPTLPALNTESITETEILSDDDMQALVKHNMLA 603 Query: 652 VLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKS 689 L+++ + G GAA LG+K TTL SR+KR+G+ S Sbjct: 604 ALEKSGWKLFGSDGAAALLGMKPTTLASRIKRMGLKPS 641 >UniRef50_Q2LPT8 Transcriptional regulator, sigma-54-dependent n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LPT8_SYNAS Length = 645 Score = 504 bits (1298), Expect = e-141, Method: Composition-based stats. Identities = 179/435 (41%), Positives = 260/435 (59%), Gaps = 16/435 (3%) Query: 267 KSKEMLLINLHERDDLAPYER----MLFDTWGNQIQTLCLLPLMSGDTML--GVLKLAQC 320 + E L +H D ER + + LLP + + G + Sbjct: 212 ATYEDFLARIHPDDRRTVEERVNLSLADPGIPYSVSHRILLPDGAECKVFEKGEVTFDGF 271 Query: 321 EEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGE 380 + V ++ L R + AY+EI LKE+L EN L E++ + GE Sbjct: 272 GKPVRMIGTVHPLIM---RKQTEEELIRAYEEIQALKEKLEAENTYLREEV-GLQHGAGE 327 Query: 381 IIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAA 440 IIG SEA+ + + + VA++ TVL+ GETGTGK + A +H SGR ++ V +NCA Sbjct: 328 IIGDSEAIKNTMHRALQVARTSVTVLLTGETGTGKGIFAHFLHQNSGRADKPFVHVNCAG 387 Query: 441 MPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQ 500 +P L+ES+LFG E+GAFTG++A++IGRFELA ++FLDE+G++PLELQ KLLRV+++ Sbjct: 388 LPHNLIESELFGREKGAFTGSTARQIGRFELAHGGTIFLDEIGELPLELQAKLLRVIEDG 447 Query: 501 EFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIP 560 +FERLGS I+ D R+I +TNR+L+ +++ FR DL++RL+VFPI +PPLRER DIP Sbjct: 448 KFERLGSPHSIKVDARIITSTNRNLEDEISEGRFREDLFFRLSVFPIIIPPLRERKADIP 507 Query: 561 LLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVL--- 617 LL + FT K ++ +NI IPA+T+++L N WPGNVREL NVIERAV++T+G L Sbjct: 508 LLVEFFTHKCSKVHRKNIRHIPAQTMKSLENYGWPGNVRELMNVIERAVIVTQGTELQLA 567 Query: 618 -QLSLPDIVLPEPETPPAATVVALEGED--EYQLIVRVLKETNGVVAGPKGAAQRLGLKR 674 QLS I + + A +G + E + I+ L+E + GP GAAQRL + Sbjct: 568 GQLSAHSIRSRKERGIEGSEKPAFKGLNGVERRHILETLQEAGWKIEGPGGAAQRLEMNP 627 Query: 675 TTLLSRMKRLGIDKS 689 +TL +RMK+L I + Sbjct: 628 STLRTRMKKLQIKRP 642 >UniRef50_A6GDL8 Sigma-54 dependent transcriptional regulator, Fis family protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GDL8_9DELT Length = 590 Score = 504 bits (1298), Expect = e-141, Method: Composition-based stats. Identities = 164/522 (31%), Positives = 247/522 (47%), Gaps = 47/522 (9%) Query: 197 VLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQHPAHEQSEVD 256 + +++D L+ V I + D + ++ L R L H P E+ +D Sbjct: 76 LTRGVELDALLVTVVDSIVEHLDAERGTLYLVDGRSRTLTSVVAHL-----PELERIRLD 130 Query: 257 EAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLM-SGDTMLGVL 315 + V +++ ++ D ++ + G +++ LP+ S ++GVL Sbjct: 131 FGQGVAGTVAAQGQIIAVSDPGADP--RFDASIDRQTGFSTRSMLALPIRDSAGEVIGVL 188 Query: 316 KLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHR---LKERLVDENLALTEQLN 372 +L FT + +A + Y ++ L+ E E+ + Sbjct: 189 QLLNAGRGQFTLADQAKATTLATSAGQVLQATSLYADLRARSPLEREADPEPSEAVEEPD 248 Query: 373 --------NVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHN 424 F +I+G S AM V V A +D+TVLI GE+GTGKELIARA+H Sbjct: 249 PSQSQIRPGPKYTFNQIVGESRAMRQVYAIVRKAAGTDATVLITGESGTGKELIARAVHV 308 Query: 425 LSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGD 484 S R + VK++C +P L+E++LFGHERGAFTGA G+FE+AD +LF+DE+G+ Sbjct: 309 NSPRREQAFVKVDCTTLPEALIENELFGHERGAFTGAHRTAPGKFEVADGGTLFIDEIGE 368 Query: 485 MPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNV 544 +PL LQ KLLRVLQ++EFER+G I+TD+R+I AT+RDL MV FR DLYYR+ V Sbjct: 369 LPLTLQGKLLRVLQDREFERVGGTTTIRTDIRVICATHRDLPAMVDAGAFREDLYYRVRV 428 Query: 545 FPIHLPPLRERPE-DIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELEN 603 PI LPPLR+R D L + F + RR GR I + L ++PGN+RELEN Sbjct: 429 VPIELPPLRDRGSADRLRLIEHFVDRYGRRHGRPIHRVTKAAQARLLEHDFPGNIRELEN 488 Query: 604 VIERAVLLTRGNVLQLSLPDIVLPEPETP------------------------PAATVVA 639 IE AV+L+ + + + + + Sbjct: 489 CIESAVVLSDEGTIDVDDLPLAPRKAKRGRTQQGSVPTETGQSSGHSGPNLGLQLGDPTL 548 Query: 640 LEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRM 681 E I V++ G AA+RLG+ R TL ++ Sbjct: 549 SLAAIERAHIEAVVQACEG---NQSEAARRLGIGRNTLARKL 587 >UniRef50_Q7UK84 Probable two-component response regulator n=1 Tax=Rhodopirellula baltica RepID=Q7UK84_RHOBA Length = 654 Score = 504 bits (1298), Expect = e-141, Method: Composition-based stats. Identities = 163/535 (30%), Positives = 261/535 (48%), Gaps = 41/535 (7%) Query: 167 IQSRVVNNVDYELLCRERDNFRILVAITNAVLSRLDMD-ELVSEVAKEIHYYFDIDDISI 225 R N L + AV +LD D +L++ +A + + +I Sbjct: 142 WLQRNHQNDARRLWQTSKMLQHA------AVWQQLDSDAQLLASMADCACEVLNCERATI 195 Query: 226 VLRSHRKNKLNIYSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPY 285 L R KL EV++ + S + D+ Sbjct: 196 FLWDKRTKKL-----IGRPAIGIEGGVLEVEDNAGIVGEALHSGSPRWWSAGGTDE-GRV 249 Query: 286 ERMLFDTWGNQIQTLCLLPLM-SGDTMLGVLKLAQCEEK-----VFTTTNLNLLRQIAER 339 R + ++L +P++ S D ++GV + F ++ L ++A Sbjct: 250 NRRIDQAQNFTTRSLLAVPMVNSRDQVIGVFEGINARPGDHRNESFDAADVRTLTELAMH 309 Query: 340 VAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVA 399 +IA+D+ ++ ++RLV++ +IG ++ + + VA Sbjct: 310 ASIAIDSYRTRTDLTETRDRLVEQAAQSK-----------PLIGNHHSIQEIRRNATKVA 358 Query: 400 QSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFT 459 +D +VL+LG GTGKE++A+ IH S R N V +NCAA+ LLES+LFGHE+GAFT Sbjct: 359 PTDLSVLVLGSNGTGKEVLAQHIHYQSERRNGPFVAVNCAALVETLLESELFGHEKGAFT 418 Query: 460 GASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIA 519 AS R+G+FELA+ +LFLDEVGDM Q KLLRVL+E+ R+G ++ I DVR+IA Sbjct: 419 DASDTRVGKFELANGGTLFLDEVGDMSAGGQAKLLRVLEEKVVVRVGGSRPIPVDVRVIA 478 Query: 520 ATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNID 579 ATN+ L+++++ + FR DL++RLNV + LPPL R +D+ LA+ F R++GR + Sbjct: 479 ATNQPLQELISAKRFREDLFFRLNVVSLTLPPLSHRGDDVMELAEHFLVDFCRQIGRAVP 538 Query: 580 SIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSL----PDIVLPEPETPP-- 633 + A + + +WPGNVREL N +ER LT +V++ S P +P Sbjct: 539 TFAASARDAMLSHDWPGNVRELRNTVERICYLTTTDVVEASDLMMSPSATRASTVSPTMD 598 Query: 634 --AATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 + + E + Q I R++ G + AA +LGL R+ L +M++LG+ Sbjct: 599 DVDGNLNSATREFQIQHIERLIASCGGNM---TEAAGKLGLHRSNLYRKMRQLGM 650 >UniRef50_A7H973 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Anaeromyxobacter sp. Fw109-5 RepID=A7H973_ANADF Length = 602 Score = 504 bits (1298), Expect = e-141, Method: Composition-based stats. Identities = 176/346 (50%), Positives = 236/346 (68%), Gaps = 6/346 (1%) Query: 349 AYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLIL 408 ++ R +E++ +ENLAL +++ S F EI+G SE + VL QV VA +DSTVLIL Sbjct: 256 DIEDRKRAEEKVRNENLALRGEIDG-SSMFEEIVGSSEGLRRVLAQVAKVAPTDSTVLIL 314 Query: 409 GETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGR 468 GETGTGKELIARAIH S R+ + +++NCAA+P+ L+ S+LFGHE+GAFTGA +R GR Sbjct: 315 GETGTGKELIARAIHRQSSRSTQAFIRVNCAAIPSSLITSELFGHEKGAFTGAVQRRTGR 374 Query: 469 FELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKM 528 FE A+ ++FLDEVGD+ E Q LLRVLQE+EFER+GS++ I DVR++AAT+RDL+ Sbjct: 375 FESANGGTIFLDEVGDLTAETQIALLRVLQEREFERIGSSRPISVDVRVLAATHRDLEAA 434 Query: 529 VADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRT 588 V FR DL+YRLNVFP+ +PPLRER +DIPLLA+ + AR G++I +I TL + Sbjct: 435 VEAGTFRQDLFYRLNVFPLQIPPLRERRDDIPLLAEYLIARYARTAGKSIRNIGKRTLES 494 Query: 589 LSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEG---EDE 645 +WPGNVREL+NV+ERAV+L G + + L + PA V+L G + E Sbjct: 495 FRAYDWPGNVRELQNVVERAVILCDGETFAVD--ETWLTRETSAPAGRSVSLAGSLADSE 552 Query: 646 YQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSAL 691 Q+I L + G V+GP GAA RLG+ R TL SR++ L IDK Sbjct: 553 RQMIEAALAASRGRVSGPSGAAIRLGIARQTLESRIQALHIDKYRF 598 >UniRef50_Q897M6 Transcriptional regulatory protein n=1 Tax=Clostridium tetani RepID=Q897M6_CLOTE Length = 567 Score = 503 bits (1295), Expect = e-140, Method: Composition-based stats. Identities = 150/360 (41%), Positives = 218/360 (60%), Gaps = 13/360 (3%) Query: 337 AERVAIAVD-NALAYQEIHRLKERLVD-ENLALT-----EQLNNVDSEFGEIIGRSEAMY 389 E VA+A +E+ L +++ + EN ++ N+ F IIG+S+ + Sbjct: 209 GELVAVAGKVLFKNIKELDLLYKKIRNIENEYKKYKGQFDESNSASYSFDNIIGKSDKIN 268 Query: 390 SVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESD 449 + A+++S VLI GE+GTGKEL A AIH S R +K+NCAA+P LLES+ Sbjct: 269 KTKDLAKKAAKTNSNVLIRGESGTGKELFAHAIHMESERVYGNFIKLNCAAIPRDLLESE 328 Query: 450 LFGHERGAFTGASA-QRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSN 508 LFG+E GAFTGA +IG+FELAD ++FLDE+GDMPL +Q KLLRVLQE+E ER+G+ Sbjct: 329 LFGYEGGAFTGAKKEGKIGKFELADGGTIFLDEIGDMPLHMQAKLLRVLQEREVERIGAT 388 Query: 509 KIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTF 568 + + DVR+I+ATNRDL+KM+ + EFR DLYYRLNV +++PPLRER EDI +L++ Sbjct: 389 RSKKIDVRVISATNRDLEKMIKEGEFREDLYYRLNVVTVNIPPLRERREDIKILSEYLLE 448 Query: 569 KIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGN--VLQLSLPDIVL 626 KI+++LG+ S E + L N +W G VR+LEN+IERAV L N + P ++ Sbjct: 449 KISKKLGKKTKSFSKEAMSCLMNYKWEGGVRQLENIIERAVNLVEHNEMIEPKHFPGNIV 508 Query: 627 PEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 + + L + E +I+ L N AA++L + RT+L ++ + I Sbjct: 509 SNKYIVEDSDLNKLINQVEKDIILETLIYCNW---NKTLAAKKLNISRTSLYEKIAKHNI 565 >UniRef50_B5YHK7 SasR n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YHK7_THEYD Length = 462 Score = 503 bits (1295), Expect = e-140, Method: Composition-based stats. Identities = 152/395 (38%), Positives = 222/395 (56%), Gaps = 19/395 (4%) Query: 308 GDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIA--------VDNALAYQEIHRLKER 359 G +L L V T + + +D + I + +ER Sbjct: 60 GIEILNSLPEEPFRPAVIVITAFGTISSAVNAIKQGAFDYLTKPLDKEVLLVTIRKAEER 119 Query: 360 --LVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKEL 417 L+ ENL L ++L + IIG+S M VL V+ +++TVLI GE+GTGKEL Sbjct: 120 MNLIKENLMLRKELYE-KFKMDGIIGKSRKMLQVLDIVKKATPTNATVLIYGESGTGKEL 178 Query: 418 IARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSL 477 IARAIH S R ++ + +NCAA+P L+ES+LFG+E GAFTGA+ ++IG E ADK +L Sbjct: 179 IARAIHYNSPRKDKPFIAINCAAIPDTLIESELFGYEPGAFTGANTRKIGLIESADKGTL 238 Query: 478 FLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSD 537 FLDE+ ++PL Q KLLRVLQ++E ++GS + DVR+IAATN++L + V +FR D Sbjct: 239 FLDEIAEIPLSTQSKLLRVLQDKEVRKIGSKDTNKVDVRIIAATNKNLSEQVEKNKFRED 298 Query: 538 LYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGN 597 LYYRL V + +PPLRER EDIP L F K ++ G+ ++ I + L L N WPGN Sbjct: 299 LYYRLKVITVEIPPLRERKEDIPDLVHFFIEKYSKEFGKRVNGIEEKALEALLNYSWPGN 358 Query: 598 VRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALE-----GEDEYQLIVRV 652 +RELE+VIERA+++ + + + L + + E E +LI + Sbjct: 359 IRELESVIERAIIICEKDKITFNDIQDELRVITPKNLFDIDIPDEGINYEELEKELIKKA 418 Query: 653 LKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 L ++N V+A AA+ LG+ T R+K+ G+ Sbjct: 419 LIKSNFVIA---KAARLLGMSYDTFWYRLKKFGLS 450 >UniRef50_B9XM81 Sigma54 specific transcriptional regulator with PAS/PAC sensor, Fis family n=1 Tax=bacterium Ellin514 RepID=B9XM81_9BACT Length = 501 Score = 502 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 169/349 (48%), Positives = 229/349 (65%), Gaps = 16/349 (4%) Query: 355 RLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTG 414 + ++ L EN L +++ + FG II S A+ VL+Q+E+VA + + VLILGE+GTG Sbjct: 156 QTQKSLELENEYLLDEIRSE--RFGAIIASSPALKKVLQQIEVVAPTQANVLILGESGTG 213 Query: 415 KELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADK 474 KEL+ARAIH+LS R + +V++NCA++P L ES+ FGH RGAFTGA R+GRFELA+ Sbjct: 214 KELVARAIHDLSERKGKPLVRVNCASIPKELFESEFFGHVRGAFTGAIKDRVGRFELANG 273 Query: 475 SSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREF 534 SLFLDE+G++PL+LQ KLLRVLQE +FER+G ++ +VR+IAATNRDL F Sbjct: 274 GSLFLDEIGEIPLDLQSKLLRVLQEGQFERVGEDRTRTVNVRIIAATNRDLLTEAKAGRF 333 Query: 535 RSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEW 594 R DLYYRL+VFPI +P LRERPEDI LA+ F + A RLG + +R L +W Sbjct: 334 RLDLYYRLSVFPIEIPALRERPEDIGPLAEHFVKQSANRLGVTRPRLTKADVRELEGYDW 393 Query: 595 PGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEG------------ 642 PGNVREL+NV+ERAV+L R L+ L + E PP+A V A +G Sbjct: 394 PGNVRELQNVVERAVILARSGRLKFELGNN--SERPFPPSARVPAPDGSIDHQPSLGELK 451 Query: 643 EDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSAL 691 + E Q+I+ LK+ G + G +GAA L +K TTL SR++R G+ K+ Sbjct: 452 QQEKQVILNALKQAQGRIYGEEGAAAILSMKPTTLASRIQRYGLKKADF 500 >UniRef50_C8W252 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W252_DESAS Length = 591 Score = 502 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 164/502 (32%), Positives = 248/502 (49%), Gaps = 35/502 (6%) Query: 192 AITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRS-HRKNKLNIYSTHYLDKQHPAH 250 + AV D+ EL ++A E++ ++ + L + Y+ + A+ Sbjct: 118 KVVGAVGVAQDITEL-QQIANELNSVNEMKSTLETIIDTGHDGYLVVNKEGYVITLNKAY 176 Query: 251 EQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDT 310 + R K LH + + + P+ Sbjct: 177 AELIDINPEDAIGRHIKEVIPE-TELHLVSQTGKTQIGEVLRVKGREAVVMRYPINKDGR 235 Query: 311 MLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQ 370 ++G + + R + + + A + ++ + R+ E EQ Sbjct: 236 IIGAVSKV-------------MFRDVNQFITSA-------KTVYSSQRRIKGE----PEQ 271 Query: 371 LNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNN 430 + +IG+S M + + V VA STVLI GE+GTGKEL+A ++H S R Sbjct: 272 WASARYTVDNLIGKSHPMLRLKETVRRVALGPSTVLIRGESGTGKELLAHSLHVGSNRCL 331 Query: 431 RRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQ-RIGRFELADKSSLFLDEVGDMPLEL 489 VK+NCAA+P LLES+LFG+ GAFTGA +IG+FE A+ ++FLDE+GDMPL + Sbjct: 332 GPFVKVNCAAVPENLLESELFGYVEGAFTGAKKGGQIGKFEQANGGTIFLDEIGDMPLLM 391 Query: 490 QPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHL 549 Q KLLRVLQE+E ERLG N+ +VR++AATNR L++M+AD FR DLYYRLNV + + Sbjct: 392 QAKLLRVLQEKEIERLGDNRARHVEVRVVAATNRPLEQMIADNTFREDLYYRLNVVTLQI 451 Query: 550 PPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAV 609 P LRER +D+ L + F K G NI + A+ L N WPGNVRELENV+ERA Sbjct: 452 PSLRERIDDLKDLVEYFLAKYNHAFGLNITGLSADALELFENYNWPGNVRELENVVERAF 511 Query: 610 LLTRGNVLQL-SLPDIVLPEPETPPAA---TVVALEGEDEYQLIVRVLKETNGVVAGPKG 665 L G+++ + LP + ++ + ++ +L + E + I L TNG Sbjct: 512 NLVDGHIIDVMHLPPYLQKFGKSKRHSINKSLPSLLEQVEKEAIADALSVTNG---NKMQ 568 Query: 666 AAQRLGLKRTTLLSRMKRLGID 687 AA+ LG+ R L ++ + GI Sbjct: 569 AAKILGISRAWLYKKIAQYGIK 590 >UniRef50_B3DZ60 DNA-binding response regulator, NtrC family (Contains REC, AAA-type ATPase, and DNA-binding Fis domains) n=4 Tax=Verrucomicrobia RepID=B3DZ60_METI4 Length = 464 Score = 502 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 156/338 (46%), Positives = 219/338 (64%), Gaps = 12/338 (3%) Query: 358 ERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKEL 417 ++ ENL L QLN +IIG S AM +V ++++ VA S +TVL+ GE+GTGKEL Sbjct: 125 RKVEVENLQLKRQLN-WKYGLEKIIGNSAAMKAVFEKIKQVASSKATVLLEGESGTGKEL 183 Query: 418 IARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSL 477 +A AIH LS R N V ++CAA+ LLES+LFGHE+GAFTGA +RIGRFE A + +L Sbjct: 184 VAHAIHQLSPRKNFPFVVVHCAALSPQLLESELFGHEKGAFTGAIERRIGRFEEAARGTL 243 Query: 478 FLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSD 537 FLDE+G++ L Q KLLR L E+ +R+GSNK++ DVR+IAATN++L+KMV + +FR D Sbjct: 244 FLDEIGEIDLPTQVKLLRALGEKTIQRVGSNKVVAVDVRVIAATNKNLEKMVEEGKFRED 303 Query: 538 LYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGN 597 L++RLNV I +PPLRER EDIPLLA+AF + A G+ ID + E ++ L +WPGN Sbjct: 304 LFFRLNVVRIVMPPLRERKEDIPLLAQAFLAEFAAENGKKIDRLSPEAMKILLEYDWPGN 363 Query: 598 VRELENVIERAVLLTRGNVLQL-SLPDIVL-PEPETPPAATVVALE------GEDEYQLI 649 VREL+ IE V+L +G ++ LP+ + P P +V + E E E +LI Sbjct: 364 VRELKMAIEHGVVLCQGEEIRPRDLPERIRIPRPLLSAPISVESSEPDCFNLKEAEKRLI 423 Query: 650 VRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 + L+ G AA++LG+ R TL ++K+ + Sbjct: 424 LHALRVCQGK---KTSAAKKLGISRKTLQRKIKQFELT 458 >UniRef50_C9RIK1 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RIK1_FIBSS Length = 509 Score = 502 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 167/513 (32%), Positives = 267/513 (52%), Gaps = 20/513 (3%) Query: 185 DNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLD 244 +L I++ + LD + + V + + ++ ++ L + +++I L Sbjct: 9 QELELLYKISSILNQSLDFETVAHPVLQTVESVMGVEHATLTLYNRHTGEISIEIAEGLS 68 Query: 245 KQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQI--QTLCL 302 + + + +V E +T RV ++ + ++I +A L T + + Sbjct: 69 SRQASKGRYKVGEG--ITGRVVETGKPIII-----PSVAKDPDFLDRTGRGKTEDKAFLC 121 Query: 303 LPLMSGDTMLGVLKLAQCEEK-VFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLV 361 +P++ ++G L + ++LL IA+ +A AV ++ E L Sbjct: 122 VPIIMEQEVVGALSADEHNPDEANLNDQIHLLEIIAQMLATAVK---LRRQAREENEILK 178 Query: 362 DENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARA 421 EN + +L + IIG++ M V Q++ VA+S LI+GE GTGK L+A A Sbjct: 179 AENERMAMEL-KARFQPDNIIGKTPEMQQVYTQIDQVAKSPLPALIVGEVGTGKGLVAEA 237 Query: 422 IHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDE 481 IH S RN V+++CAA+P +L+ +LFG E+GA G + GR E A+ +LFLDE Sbjct: 238 IHFRSDRNLGPFVRVHCAALPESVLDRELFGSEKGALVGVVNEAPGRVEQAEGGTLFLDE 297 Query: 482 VGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYR 541 V ++ LQ KLLR+LQ+ E ER+G+ + +VR+I AT ++L++MV+D FR DLYY+ Sbjct: 298 VAELTPNLQIKLLRLLQQGEMERVGARFPKKVNVRVICATTKNLQQMVSDGTFREDLYYQ 357 Query: 542 LNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVREL 601 L++ PI++PPLR+R DI LLA F R +G+N+ + T+ L + WPGNVREL Sbjct: 358 LHIVPIYVPPLRKRRTDIVLLADYFVDHYCRLVGKNVRRLARGTIEMLMSYPWPGNVREL 417 Query: 602 ENVIERAVLLTRGNVLQLSL--PDIVLPEPETPPAATVVALEGED-EYQLIVRVLKETNG 658 EN IERAVLLT +V+ P I E P + + L E E +I LK + G Sbjct: 418 ENAIERAVLLTEEDVIYPHHFPPTIQTDETSGTPVSGNLKLMVEAYERDIICDALKSSKG 477 Query: 659 VVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSAL 691 +A AA+ L L ++K+LGID +A Sbjct: 478 KMA---AAARSLSTTPRILTYKIKQLGIDLAAF 507 >UniRef50_B5WAL2 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Burkholderia sp. H160 RepID=B5WAL2_9BURK Length = 595 Score = 502 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 192/484 (39%), Positives = 281/484 (58%), Gaps = 14/484 (2%) Query: 208 SEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQHPAHEQSEVDEAGTLTERVFK 267 EV ++ + ++ + + L + +L+ D + E++F+ Sbjct: 125 EEVLARVNTHLELQRLKLRL-QKSEERLSRIIESATDAIVAFDSDGRITLFNRAAEQMFR 183 Query: 268 SKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTT 327 + + +P L + Q P+ D G + E Sbjct: 184 CPANAAVGQACKAFFSPSLYDLVGDFMRGNQR--RAPIWLPD---GHSAVRADGESFRIE 238 Query: 328 TNLNLLRQIAERV-AIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSE 386 +L+ + + + + + ++ +L N L ++L ++ +++G Sbjct: 239 ASLSSAEACDQPIYILFIRDIEERRKAEVEVGQLRGLNRYLQDELLEAEAG-ADLVGT-A 296 Query: 387 AMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLL 446 + V++ V VA +D++VL+ GETGTGKELIA+A+H +S R+ + +VK+NCA +PA L+ Sbjct: 297 GLQGVMQHVRQVAGTDASVLVTGETGTGKELIAQALHRMSARSGKPLVKLNCAVLPANLV 356 Query: 447 ESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLG 506 ES+LFGHE+GAFTGA A++ GRFELAD+ +LFLDEVG++PL+LQ KLLRVLQ EFERLG Sbjct: 357 ESELFGHEKGAFTGALARKAGRFELADEGTLFLDEVGELPLDLQAKLLRVLQNGEFERLG 416 Query: 507 SNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAF 566 S + +TDVR+IAATNR+L + A FR+DLYYRLNVFPI LPPLR RPEDI L + F Sbjct: 417 SIRTQKTDVRIIAATNRNLAEEAATGRFRADLYYRLNVFPIELPPLRARPEDIEQLVEHF 476 Query: 567 TFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVL 626 A + GR+ID++ L L WPGNVREL++VIERAV+LT+G+ QL+L D Sbjct: 477 VRHYAAKYGRHIDAVADAQLNVLRAYRWPGNVRELQHVIERAVILTQGS--QLALGDWF- 533 Query: 627 PEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 TPPA + LE + E I++VL++T+ V+G GAA+RLGL TTL SRMKRL I Sbjct: 534 -RDATPPACEALTLE-DAERAHILKVLEQTDWRVSGKAGAAERLGLPPTTLESRMKRLAI 591 Query: 687 DKSA 690 + A Sbjct: 592 TRKA 595 >UniRef50_Q1Q6P9 Similar to Sigma-54 dependent transcriptional regulator n=2 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q6P9_9BACT Length = 512 Score = 502 bits (1293), Expect = e-140, Method: Composition-based stats. Identities = 163/478 (34%), Positives = 245/478 (51%), Gaps = 44/478 (9%) Query: 230 HRKNKLNIYSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERML 289 R ++ + + E + A L V K+K+ I + Sbjct: 62 ERTFGVSFHEVKGTNYLALRLRSIEQELARNL-NNVLKTKKAFTIKELQIISPDKVTHFF 120 Query: 290 FDTWGNQIQTLCLLPLMSGDTML-GVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNAL 348 + +P++ G +L GVL ++ + + +RV + Sbjct: 121 DQS---------CIPILDGGGVLQGVLSIS---------------KDVTKRVYKEIQYQE 156 Query: 349 AYQEIHRLKERLVDENLALT--EQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVL 406 + + + L + L +N + + F +IG+S M ++ +E V+Q+DSTVL Sbjct: 157 SQKMLKALFQELEVKNTTIRSLQTSLRERYSFHSLIGKSYLMQNIYDLIEKVSQTDSTVL 216 Query: 407 ILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRI 466 I GETGTGKEL+ARAIH S R + +V +NCAA+P LLES+LFGH +G+FTGA + Sbjct: 217 ITGETGTGKELVARAIHYNSHRKDYNLVAVNCAALPETLLESELFGHVKGSFTGAIRDKK 276 Query: 467 GRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLK 526 G+FELADK ++FLDE+G++ + Q KLLRVLQE+ ER+G K I+ D+R+IAATN+D+ Sbjct: 277 GKFELADKGTIFLDEIGELSIPTQVKLLRVLQERYIERVGDEKTIKVDIRIIAATNQDIL 336 Query: 527 KMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETL 586 +++ FR DL+YRLN+ I LP L+ER +DIPLL F K R +NI+ I L Sbjct: 337 ELIEKGTFRKDLFYRLNIISIRLPSLKERTDDIPLLVNHFIEKFNIRFKKNINGISPNAL 396 Query: 587 RTLSNMEWPGNVRELENVIERAVLLTRGNVLQ-------------LSLPDIVLPEPETPP 633 R L WPGN+RELE VIE+AVLL ++ L LP + P+ Sbjct: 397 RKLLAYSWPGNIRELEGVIEKAVLLEESETIENIELPTDHSATTNLCLPKPLNAGPDISS 456 Query: 634 AATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSAL 691 + E + V V ++ +G + A GL R T+L++MK+ + KS Sbjct: 457 YEDLQKRLDMLEREYFVSVFQKHHGRIGSI---AACTGLNRRTILNKMKKFSLKKSLF 511 >UniRef50_Q1PV55 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PV55_9BACT Length = 448 Score = 502 bits (1293), Expect = e-140, Method: Composition-based stats. Identities = 159/414 (38%), Positives = 233/414 (56%), Gaps = 17/414 (4%) Query: 286 ERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVD 345 ER+ D + T ++P M G +L +K V T+ + E + Sbjct: 39 ERISKDPEYAIVLTDFVMPEMDGIQLLSKIKQINSAIDVIVMTSYGTVSSAVEAMKHGAS 98 Query: 346 NAL----------AYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQV 395 + + E +RL E L +L FG IIG S + + + Sbjct: 99 DYITKPFKRDELVLVIEKILQMQRLEGEVDRLRSELGE-KYTFGNIIGESPKIKKIYDII 157 Query: 396 EMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHER 455 V+ +++ +LI GETGTGKEL+A+AIH S RNN R VK++C+++ LLES+LFGHE+ Sbjct: 158 SHVSGTEANILIQGETGTGKELVAKAIHYNSARNNHRFVKVDCSSLTETLLESELFGHEK 217 Query: 456 GAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDV 515 GAFTGA+ R+GRF AD ++FLDE+G++ L +Q KLLRVLQ+ EFE +GS++ I+ DV Sbjct: 218 GAFTGATKDRVGRFRKADHGTIFLDEIGNISLAVQAKLLRVLQDSEFEAVGSDESIKVDV 277 Query: 516 RLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLG 575 R+IAATN DL+ V FRSDL+YRLNV I LPPLRER EDIPLLA F ++ Sbjct: 278 RIIAATNADLEGCVEKGLFRSDLFYRLNVIRIFLPPLRERTEDIPLLAAHFLAIHNKKNR 337 Query: 576 RNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPP-- 633 + ++ +TL L++ WPGN+RELENVIERAV+L + N + + + T P Sbjct: 338 KTVEGFSRDTLNILTSYAWPGNIRELENVIERAVILCKKNRITPEDVPLYQEKMGTRPGL 397 Query: 634 -AATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 + L + E Q+I+ L+ + A + A+ L + R +L +++ + I Sbjct: 398 SGKPLQELLEQTERQIIINTLEAND---ADKEKTAKILKISRASLYNKLNKYKI 448 >UniRef50_B5YHF3 Acetoacetate metabolism regulatory protein AtoC n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YHF3_THEYD Length = 455 Score = 502 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 149/426 (34%), Positives = 232/426 (54%), Gaps = 20/426 (4%) Query: 280 DDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAER 339 DD A +L + LP + G T+L +K + V T ++ + Sbjct: 33 DDGAKALSILDSEIFDIAIVDLKLPGVDGLTLLKHIKTISPQTGVIIITAFAEVKTAVQA 92 Query: 340 VAIA----VDNALAYQEIHRLKER------LVDENLALTEQLNNVDSEFGEIIGRSEAMY 389 + + +E+ + ER L E L +L EF I+ S M Sbjct: 93 IKDGAFDYIAKPFTNEELLLVIERFLKFRTLEKEVKYL-SELVKKKDEFEGIVSTSSVMK 151 Query: 390 SVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESD 449 + +++ VA++D VLI GE+GTGKELIA AI S R + +K+NCAA+P L ES+ Sbjct: 152 EIFDKIDAVAKTDVPVLIQGESGTGKELIANAIQKQSLRKEKPYIKINCAAIPETLFESE 211 Query: 450 LFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNK 509 LFG+E+GAFTGA+ + G+FELA+ ++F DE+GDMPL LQ KLLRV+++ RLG + Sbjct: 212 LFGYEKGAFTGATETKKGKFELANGGTIFFDEIGDMPLSLQAKLLRVIEDGIVYRLGGKE 271 Query: 510 IIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFK 569 I+ +VR I AT+++LK+++ +FR DL+YR+NV PI +PPL+ER EDIP+L + F Sbjct: 272 PIKINVRCIYATSKNLKELIKAEKFREDLFYRINVMPIAIPPLKERKEDIPVLIEKFLKI 331 Query: 570 IARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQL-SLPDIVLPE 628 + + G+ +I L + ++PGNVREL++ IERA+LL++ V+ + LP+ P Sbjct: 332 FSEKYGKQNITISPSAYEALLSYDYPGNVRELKHAIERALLLSKDGVIDIKHLPEEFSPL 391 Query: 629 PETP-----PAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKR 683 ++ E LI++ L+E AA++LG+ R L ++K Sbjct: 392 SSFQKKCFISNFSLKECIENFEKNLIIKALQECGWK---KTEAAKKLGISRKALWEKIKF 448 Query: 684 LGIDKS 689 GI+ + Sbjct: 449 YGIEPN 454 >UniRef50_B3E4S0 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Geobacter lovleyi SZ RepID=B3E4S0_GEOLS Length = 456 Score = 502 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 152/429 (35%), Positives = 231/429 (53%), Gaps = 16/429 (3%) Query: 274 INLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLL 333 + A L + + + T +PLM G +L +K + + T+ + Sbjct: 30 FRVETAGSGAEALERLQHSPADIVITDLSMPLMDGIELLSEIKSLYPQIFILILTSDDST 89 Query: 334 RQIAERVAIAVDNALA----YQEIHRLKERLVDENLALT-----EQLNNVDSEFGEIIGR 384 Q+ + + + L ++ + R ++ A+ E L+ F +IG+ Sbjct: 90 SQVVKAMKAGAYDYLLKPFDFEMVERSIATILSHKAAVQAGLCPECLSGEQYCFENLIGQ 149 Query: 385 SEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 444 M+ + + + VAQ+ +TVLI GE+GTGKELIA AIH S R ++ +++NCAA+ G Sbjct: 150 DRKMFEIYEMISQVAQTSATVLITGESGTGKELIASAIHAKSTRKDKPFIQINCAALTEG 209 Query: 445 LLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFER 504 L+ S+LFGHE+GAFTGA A++ G FE A +LFLDE+GD+ Q LLR+L+ F+R Sbjct: 210 LISSELFGHEKGAFTGAVARKKGLFEQASGGTLFLDEIGDISPTTQVSLLRILELGTFQR 269 Query: 505 LGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAK 564 +G + I+ DVRLI ATNRDL +++FR DLYYRLNV + PPLR+R DIPLL + Sbjct: 270 VGGTETIKADVRLICATNRDLAAAAREKQFREDLYYRLNVVSLQAPPLRDRRSDIPLLVR 329 Query: 565 AFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLS-LPD 623 F + + ID + + + L N +WPGN REL N+IE AV+ +RG L LP Sbjct: 330 YFLERYCSLNNKQIDGVTRDAMTLLCNYDWPGNCRELANIIEHAVIFSRGRTLDKDSLPS 389 Query: 624 IVLPEPETPPAATV---VALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSR 680 + T+ A + E LI +VL+E+N + K AA+ L + R TL + Sbjct: 390 QIRTSDRHSSGLTLNLATATLADAESALIKKVLEESNWNL---KKAAELLDIARGTLYGK 446 Query: 681 MKRLGIDKS 689 M++ + K Sbjct: 447 MEKYHLTKP 455 >UniRef50_A8UFP5 Sigma54 specific transcriptional regulator with PAS sensor, Fis family protein n=1 Tax=Flavobacteriales bacterium ALC-1 RepID=A8UFP5_9FLAO Length = 616 Score = 501 bits (1291), Expect = e-140, Method: Composition-based stats. Identities = 148/354 (41%), Positives = 229/354 (64%), Gaps = 7/354 (1%) Query: 342 IAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQS 401 + + N E L ++ L +++ + S + +I+ M +VL V+ VA + Sbjct: 263 LILRNIEDRLEAEDQISFLTNQTQYLEDEIKELTSGY-DIVAEDPKMQNVLSLVKHVAPT 321 Query: 402 DSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGA 461 D+TVLI GETGTGKEL++RAIH S R+++ ++++NC A+P L+ES+LFGH++GAFTGA Sbjct: 322 DATVLINGETGTGKELVSRAIHEASNRSDKPLIRINCGAIPTNLIESELFGHKKGAFTGA 381 Query: 462 SAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAAT 521 ++ R GRF LADK ++FLDE+G+MP+ELQPKLLRV+QE EF+ +GS++ I+ +VR+IAAT Sbjct: 382 TSDRKGRFLLADKGTIFLDEIGEMPIELQPKLLRVIQEGEFDPVGSSETIKVNVRIIAAT 441 Query: 522 NRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSI 581 +RDL + AD +FR DLYYRLNVFPI +P LR R ED+ L+A +++L + + + Sbjct: 442 HRDLLQHAADGKFREDLYYRLNVFPIEVPALRHRAEDVCLIAGEMINHFSKKLNKPMVEL 501 Query: 582 PAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATV---- 637 L + WPGNVREL+N+IERA+++++ + + + E P T+ Sbjct: 502 SDIDKSHLMDYHWPGNVRELQNLIERAIIISKSGTINIKDVIPKMQSDEEHPPKTLKDKV 561 Query: 638 --VALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKS 689 + E + I++ LK+T ++G GAA+ L L TTL S++K LG+++ Sbjct: 562 YTSQELLKLEKENILKALKQTRWKISGKNGAAELLQLPATTLASKIKVLGLERP 615 >UniRef50_A5G9U3 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Deltaproteobacteria RepID=A5G9U3_GEOUR Length = 466 Score = 500 bits (1289), Expect = e-140, Method: Composition-based stats. Identities = 170/405 (41%), Positives = 232/405 (57%), Gaps = 24/405 (5%) Query: 295 NQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIA----VDNALAY 350 + + T ++P ++G + LK + E + A + ++ Sbjct: 49 HMVITDIMMPRVNGLEFIKKLKAMRPEIVTIAYSAFANFEMTANLLKAGAFFYLEKPFNL 108 Query: 351 QEIHRLKERLVDENLALTEQLNNVD------SEFGEIIGRSEAMYSVLKQVEMVAQSDST 404 +E+ +R E+ AL Q S IIG S+ M S+ + +E VA SDST Sbjct: 109 EELETHVKR-GLEHQALQRQSFKSKPCIKNRSLLNNIIGESDRMLSLFEMIEKVAGSDST 167 Query: 405 VLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQ 464 VLI GE+GTGKEL+ARAIH+LS R + V +NCAA+P LLES+LFGH +G+FTGA A Sbjct: 168 VLIQGESGTGKELVARAIHDLSNRATKNFVPVNCAAIPDDLLESELFGHVKGSFTGAVAT 227 Query: 465 RIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRD 524 RIGRFE+AD+ +LFLDE+GDM LQ KLLRVLQ +E E +G+ + + DVR+IAATN++ Sbjct: 228 RIGRFEMADRGTLFLDEIGDMKPNLQVKLLRVLQNKELEPVGAARTKKVDVRIIAATNQN 287 Query: 525 LKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAE 584 L+ +VA + FR DLYYRL+V PI LPPLRER DIPLL F K R R + S Sbjct: 288 LEHLVASKIFREDLYYRLSVIPITLPPLRERKTDIPLLLNNFLEKFNRNKQRKVQSFDKN 347 Query: 585 TLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQL-SLPDIVLPEPETPPAATVVALE-- 641 T+ L N +WPGNVRELEN++ER V+L + LP+ P + + + Sbjct: 348 TMDILCNFDWPGNVRELENLVERLVILKGSGTITFQDLPEKYRGIKSAPKSERLTLPDTG 407 Query: 642 -------GEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLS 679 + E QLI++ L++T G K AA L LKRTTL+ Sbjct: 408 FCLNSAVEDFENQLILQALEKTGG---NKKEAATLLNLKRTTLIE 449 >UniRef50_Q3ACE2 Sigma-54 dependent transcriptional regulator n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3ACE2_CARHZ Length = 573 Score = 500 bits (1289), Expect = e-140, Method: Composition-based stats. Identities = 152/397 (38%), Positives = 221/397 (55%), Gaps = 13/397 (3%) Query: 299 TLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKE 358 C LP + D V+++ + F + + + + + Sbjct: 179 FFCELPESADDIKTEVVEINGRQVVAFKYPIVKDYKLYGGVIKVIFQEVSDLLALAEKVN 238 Query: 359 RLVDENLALTEQLNNVDS-EFGE--IIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGK 415 +L E +L S +F E IIG ++ + + ++ +A ++TVLI GE+GTGK Sbjct: 239 QLNSELSYYKNELTKYTSKQFTENKIIGNHPSIVRLKEIIKKIAPYNTTVLIRGESGTGK 298 Query: 416 ELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQ-RIGRFELADK 474 EL+A A+H SGR +K+NCAA+P L E++LFG+ GAFTGA +IG+FELA+ Sbjct: 299 ELVAHALHVESGR-PGSFIKVNCAAIPENLFEAELFGYVEGAFTGAKKGGQIGKFELANN 357 Query: 475 SSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREF 534 ++FLDE+GDMPL +Q KLLRVLQE+E ERLG K + +VR+IAATN++L++++ ++F Sbjct: 358 GTIFLDEIGDMPLTMQAKLLRVLQEKEVERLGDRKTRKINVRVIAATNQNLEELIKKKKF 417 Query: 535 RSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEW 594 R DLYYRLNV +++P LRER ED+PLL K F K + G N+ I E + N W Sbjct: 418 REDLYYRLNVISLYVPALRERIEDLPLLIKYFIEKFNKEYGTNVTGISPEVMDIFMNYSW 477 Query: 595 PGNVRELENVIERAVLLTRGNVLQLS-LPDIVLPE----PETPPAATVVALEGEDEYQLI 649 PGN+RELENV+ER L G V++ LP +L E E P ++ L E +LI Sbjct: 478 PGNIRELENVLERCFNLVEGKVIEKKYLPPYILGEELKNKEFPLGQSLTNLLEAYEKELI 537 Query: 650 VRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 L + G AA LG+ R L R+K + Sbjct: 538 KAALLKAKG---NKSKAANLLGISRQWLHKRLKYFNL 571 >UniRef50_A3ZU96 Probable two-component response regulator n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZU96_9PLAN Length = 651 Score = 500 bits (1288), Expect = e-140, Method: Composition-based stats. Identities = 166/528 (31%), Positives = 264/528 (50%), Gaps = 26/528 (4%) Query: 161 SVVTEQIQSRVVNNVDYELLCRER-DNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFD 219 + +T + V + + R L+ I + DM L++E+A+ F Sbjct: 133 AALTAHLLGYGVGLIRQRVARSARLKRLEQLLTIIESWQKTRDMHTLLTEMAEAAAELFG 192 Query: 220 IDDISIVLRSHRKNKLNIYSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHER 279 + SI L K L + V + + V ++ E ++ ++ Sbjct: 193 SERASIFLWDRPKKTLV-----GRPALGIEGGELRVPDDRGVVGHVVQTGEPRRVDELDK 247 Query: 280 DDLAPYERMLFDTWGNQIQTLCLLPLM-SGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAE 338 D++ R + + + L +PL+ + G +L + FT + L ++A Sbjct: 248 DEI---NRDIDQSLAFHTRNLLCVPLVGRRGRIFGAFELINKQLGNFTAEDQLGLTELAA 304 Query: 339 RVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMV 398 + A++N + I + RL D + E+IG A+ ++ + V Sbjct: 305 HASSALENTQETERILASRNRLAD-----------AAAAAAELIGDCPAIATLRGTIRRV 353 Query: 399 AQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAF 458 A+S+ VL+LGE GTGKE+++++IH S R + +V +NCAA+P LLES+LFG E+GAF Sbjct: 354 AESNLPVLVLGENGTGKEVVSQSIHFRSDRRAQPLVAVNCAAVPDTLLESELFGREKGAF 413 Query: 459 TGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLI 518 TGA R G+FE+AD +LFLDE+GD+ L Q KLLRVL++Q R+G IQ DVR+I Sbjct: 414 TGADETRPGKFEMADGGTLFLDEIGDLSLSGQSKLLRVLEDQLIMRVGGTSEIQVDVRII 473 Query: 519 AATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNI 578 AATNRDL ++V +++FR DL++RL+V I LPPLRER DI LA F + + GR Sbjct: 474 AATNRDLGELVREKKFREDLFFRLHVVTIELPPLRERGTDILTLANHFLHHFSLKTGRQT 533 Query: 579 DSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDI--VLPEPETPPAAT 636 ++ R L WPGNVREL N +ER + L V+Q + + P Sbjct: 534 PTLSEAAQRRLLAHAWPGNVRELRNTMERVIFLHSDEVIQPESLQFHSLDSHDDAPMNLP 593 Query: 637 VVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRL 684 + E + + I R + G ++ AA+++G+ R+ L +MK+L Sbjct: 594 LNDATAEFQRRYIQRHVDAAQGNIS---AAAEKIGMHRSNLYRKMKQL 638 >UniRef50_C7LQX0 Sigma54 specific transcriptional regulator with PAS/PAC sensor, Fis family n=2 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LQX0_DESBD Length = 647 Score = 500 bits (1288), Expect = e-140, Method: Composition-based stats. Identities = 198/524 (37%), Positives = 288/524 (54%), Gaps = 34/524 (6%) Query: 175 VDYELLCRERD-------NFRILVAI-TNAVLSRLDMDELVSEVAKEIHYYFDIDDISIV 226 + L ERD R+L I +A+ R+D L+ + ++ Sbjct: 143 LTVNALKEERDWPEEIVVYLRLLGEIFVSALQRRVDDYALLEA---KERLSLAVESAGAG 199 Query: 227 LRSHRKNKLNIYSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYE 286 + ++T A E +D ++ F++ + L DD A ++ Sbjct: 200 ILDLDLESGVYWTTD------RAREILGLDSGLSVK---FEN----TLKLIHPDDKAMFQ 246 Query: 287 RMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLL---RQIAERVAIA 343 +++ + + Q ++ + + L+ + F LL + ER + Sbjct: 247 KVMGEVISKKGQGSIEYRIVLPNGQIRWLRRWVRYHEGFPAGRPRLLGITLDVTERQQME 306 Query: 344 VDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDS 403 + QEI RL +L +EN L ++ + + E M VL +VE VA ++ Sbjct: 307 LKLRAQLQEIERLHGQLEEENSYLRNEVMSCRER-KNLHNFGERMQEVLIKVEQVASTEC 365 Query: 404 TVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASA 463 TVLI GETGTGKE++A+AIH S R++R M+ +NCAA+PA L+ES+LFG E+GAFTGA + Sbjct: 366 TVLIEGETGTGKEVLAQAIHQSSPRSHRMMITVNCAALPAALVESELFGREKGAFTGALS 425 Query: 464 QRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNR 523 +++GRFELA S+LFLDE+G+MPLE Q KLLRVLQE EFERLGS K I+ DVR++AA+NR Sbjct: 426 RQVGRFELAQGSTLFLDEIGEMPLETQAKLLRVLQEGEFERLGSPKTIKVDVRVLAASNR 485 Query: 524 DLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPA 583 DL V+ FR DLYYRLNVFPI LPPLRER EDIP L F + R+G+ I I Sbjct: 486 DLAVEVSQGRFRRDLYYRLNVFPILLPPLRERREDIPQLVWEFISEFGDRMGKKIRRIAK 545 Query: 584 ETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGE 643 + L WPGN+REL NVIE A+++T+G+ L+L+ +++ P+ P T+ E Sbjct: 546 NDMERLKVHAWPGNIRELRNVIEHAMIVTKGDTLELA--HLLVNAPQDEPVVTL----EE 599 Query: 644 DEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 E + I R+LK V G GAA+ L + +TL SRM++LGI Sbjct: 600 MERRHIQRILKVAGNRVRGSGGAAELLAINPSTLNSRMRKLGIK 643 >UniRef50_C6E9E0 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Deltaproteobacteria RepID=C6E9E0_GEOSM Length = 467 Score = 500 bits (1288), Expect = e-140, Method: Composition-based stats. Identities = 169/404 (41%), Positives = 240/404 (59%), Gaps = 24/404 (5%) Query: 297 IQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIA----VDNALAYQE 352 + T ++P ++G + LK + + + A + ++ +E Sbjct: 51 VITDIMMPRVNGLEFIKQLKSIRPDIVTIAYSAFANFEMTANLLKAGAFFYLEKPFNLEE 110 Query: 353 IHR-----LKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLI 407 + L+ + + ++ + IIG SE M S+ + +E VA SDSTVLI Sbjct: 111 LETHVKRGLEHQALQSKSFRSKPCIKNRALLNNIIGESEKMLSLFEMIEKVATSDSTVLI 170 Query: 408 LGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIG 467 GE+GTGKEL+ARAIH+LS R+++ V +NCAA+P LLES+LFGH +G+FTGA A RIG Sbjct: 171 QGESGTGKELVARAIHDLSNRSDKNFVALNCAAIPDELLESELFGHVKGSFTGAVASRIG 230 Query: 468 RFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKK 527 RFE+ADK +LFLDE+GDM LQ KLLRVLQ +E E +GS + + DVR+IAATN++L Sbjct: 231 RFEMADKGTLFLDEIGDMKANLQVKLLRVLQSRELEPVGSTRSKKVDVRIIAATNQNLDH 290 Query: 528 MVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLR 587 MVA +EFR DLYYRL+V PI LPPLRER D+PLL +F K R R + + + Sbjct: 291 MVASKEFREDLYYRLSVIPIMLPPLRERGSDVPLLLNSFLEKFNRSKQRKVQGFDKQVME 350 Query: 588 TLSNMEWPGNVRELENVIERAVLLTRGNVLQLS-LPD---------IVLPEPETPPAAT- 636 LSN +WPGNVRELEN++ER V++ V+ + LP+ ++ EP T P Sbjct: 351 ILSNYDWPGNVRELENLVERLVIIKTTGVISIHDLPEKYRGGRTTTVLHGEPMTLPDDGF 410 Query: 637 -VVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLS 679 + + E E +LI++ L+++ G K AA+ L LKRTTL+ Sbjct: 411 CLNSAVEEFENRLILQALEKSGG---NKKEAAELLNLKRTTLIE 451 >UniRef50_C1SGB7 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SGB7_9BACT Length = 473 Score = 500 bits (1288), Expect = e-140, Method: Composition-based stats. Identities = 162/465 (34%), Positives = 240/465 (51%), Gaps = 30/465 (6%) Query: 255 VDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGV 314 VD+ + E + ++ + +++ D + I + +P + G TM+ + Sbjct: 11 VDDDDNMREAMLETVRRMGVSVEIATDGQEGFEKASKNAYDLIVSDMRMPNVDGMTMMNM 70 Query: 315 LKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNV 374 ++ A + T + + + + + + + E LV L + E V Sbjct: 71 IQSAGITTPLCFVTAFGTVNNAVDALKLGAYDYILKPFAPEVIEELVRRVLEIEETAPAV 130 Query: 375 DSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMV 434 + I RS M + VA S++TVLI GE+GTGKE+ AR IH S R++ V Sbjct: 131 KRKKNTAIFRSAFMAQLFSLARDVAASEATVLITGESGTGKEVFARYIHENSNRSSGAFV 190 Query: 435 KMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLL 494 +NCAA+P L+ES+LFG+E+GAFTGA ++ G+FELAD ++ LDE+G++PL LQ KLL Sbjct: 191 AVNCAALPENLMESELFGYEKGAFTGAVNRKPGKFELADGGTILLDELGEIPLHLQAKLL 250 Query: 495 RVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRE 554 RVLQE+E ERLG K + +VR++A TN+ LKK V + FR DLYYRLNV I LPPLRE Sbjct: 251 RVLQEKEVERLGGTKPFKINVRILATTNKVLKKEVDEGNFREDLYYRLNVISIELPPLRE 310 Query: 555 RPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRG 614 R EDI LA F K A+ G+ + + ++ L + +WPGNVRELE+ IERAV+L R Sbjct: 311 RKEDIMELATFFAEKYAQINGKGSCKMTDDAVKALLDYDWPGNVRELEHTIERAVVLCRD 370 Query: 615 NVL--------------------QLSLPDI----VLPEPETPPAATVVALEGEDEYQLIV 650 V+ +L+ D E E E +LI+ Sbjct: 371 GVISERNLFLHGITINQFMTDKQELAAADSYTGCETTEDSVSAGIDFAGTIAEMERELII 430 Query: 651 RVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRL---GIDKSALI 692 + LKET G AA LG+ TL +++ G++ +I Sbjct: 431 KTLKETGG---NRTKAADMLGITVRTLRNKLNEYKENGLNIEDII 472 >UniRef50_A6GJF4 Sigma-54 dependent, Vanadium nitrogenase transcriptional regulator, VnfA n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GJF4_9DELT Length = 507 Score = 500 bits (1287), Expect = e-140, Method: Composition-based stats. Identities = 169/513 (32%), Positives = 251/513 (48%), Gaps = 31/513 (6%) Query: 189 ILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQHP 248 +L + T A+ +++ +V+ + + + + + L + ++ + + Sbjct: 7 LLRSPTQALNEGMELRSVVNSILRMLAERPAMVHPYLTLVEPESGESHLEEAPDMTPEQQ 66 Query: 249 AHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSG 308 + RV +S ++ H D + + PL Sbjct: 67 RR--IRPRHGEGIVGRVVQSGRTRVV--HGSSDSFLNR---LGRSEPEGMSFICAPLRQR 119 Query: 309 D-TMLGVLKLAQC-EEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLA 366 D ++G L + ++ ++ L+ +AE + A++ + +E + EN Sbjct: 120 DGEIVGTLAVDHRGQDPAALQGDVLLIEALAEMLGRAIE---LRRRSMAEREAVELENQR 176 Query: 367 LTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS 426 L +L IIG ++M V ++ V+ +D+TVL+ GE+GTGKEL+ARAIH S Sbjct: 177 LRAELRG-RFRVANIIGNHKSMAQVYDRIARVSSADTTVLLRGESGTGKELVARAIHFAS 235 Query: 427 GRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMP 486 R V +NCAA+P G LES+LFGHERGAFTGA R GRFELAD +LFLDE+G++ Sbjct: 236 PRAEAPFVAVNCAALPEGTLESELFGHERGAFTGAIGARKGRFELADGGTLFLDEIGELR 295 Query: 487 LELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFP 546 Q KLLRVLQE+ FER+G + DVR++ AT+ DL+ +A EFR DLYYRLNVF Sbjct: 296 PHTQVKLLRVLQERRFERVGGATTRRCDVRVLTATHADLEAAMARGEFREDLYYRLNVFE 355 Query: 547 IHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIE 606 I LPPLRER EDI LA F + R + I + R L +WPGNVRELEN IE Sbjct: 356 IMLPPLRERGEDILALADFFVERYGPRQRPPVTRIGHDAARHLLAWDWPGNVRELENCIE 415 Query: 607 RAVLLTRGNVLQLSLPDIVLPEPETPPAA---------------TVVALEGEDEYQLIVR 651 RAVLLT V++ L P A T+ E +++ R Sbjct: 416 RAVLLTNDGVIEAEHLPPTLRGAAGPSRARASNTPASRAVAEGRTLDEALEAVEREILER 475 Query: 652 VLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRL 684 L ++ G AA+ LG+ + R+K+ Sbjct: 476 ALADSGG---NRASAARALGISERRMGLRVKKY 505 >UniRef50_Q6ARB9 Probable two-component system response regulator (Ntr family) n=1 Tax=Desulfotalea psychrophila RepID=Q6ARB9_DESPS Length = 443 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 139/315 (44%), Positives = 198/315 (62%), Gaps = 3/315 (0%) Query: 373 NVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRR 432 DS+F EIIG S M + Q+ ++A SD+T+L+ GE+GTGKEL+A AIH S R Sbjct: 132 QADSKFPEIIGESAPMQELFSQISLIAPSDATILLSGESGTGKELVATAIHRHSKRKEGA 191 Query: 433 MVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPK 492 ++++NCAA+ LLES+LFGHE GAFTGA+ Q+ G FE ADK +LFLDE+GDM L Q K Sbjct: 192 LIRINCAALHENLLESELFGHELGAFTGAAKQKKGLFERADKGTLFLDEIGDMSLTTQVK 251 Query: 493 LLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPL 552 +LRVLQE EFER+G N I+ +VR+IAA++R+L+K++ + FR DL++RL+V P+HLP L Sbjct: 252 ILRVLQEGEFERVGGNDSIKVNVRIIAASHRNLEKLIEEGTFRQDLFFRLSVVPLHLPAL 311 Query: 553 RERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLT 612 RER DIP+LA F ++ ++I E L L WPGN+RELEN IER V+L Sbjct: 312 RERLVDIPILANFFLSLYNKKNRKDIKGFSQEALDLLMEYPWPGNIRELENSIERGVILC 371 Query: 613 RGNVLQLSLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGL 672 G + +P + + E + I + L + A++LG+ Sbjct: 372 LGEQITAHELPPQFFRNRSPGELSSRDTLRDVEKRAIQQALARSG---FNKSATAKQLGI 428 Query: 673 KRTTLLSRMKRLGID 687 R TLL++++ G++ Sbjct: 429 ARQTLLNKIRDYGLE 443 >UniRef50_D0LSM1 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LSM1_HALO1 Length = 557 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 171/460 (37%), Positives = 248/460 (53%), Gaps = 21/460 (4%) Query: 243 LDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCL 302 L + + V +++ +RD + +Q Sbjct: 101 LVHSELNGNFWRIPQGAFKVGMVAAQGRSIVVTDPQRDPKIRRPDWIR---AEGVQGFVG 157 Query: 303 LPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVD 362 PL+ LGVL + + T ++ ++LR +AE A A+ A A++++ ++ +L Sbjct: 158 QPLICRGQRLGVLGV--FVRQPVTQSSTSVLRILAEHAAAAIATARAFEQVDEMRRQLQA 215 Query: 363 ENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAI 422 EN L E + + D E++G S AM V +++ VA + + VLILGE+GTGKEL+ARA+ Sbjct: 216 ENAYLREVVADRD---HEMVGESTAMAHVRGEIQAVAPTHANVLILGESGTGKELVARAV 272 Query: 423 HNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEV 482 H S R ++++NCA++ L ES+ FGH +GAF+GA R G FE A+ +LFLDE+ Sbjct: 273 HRASRRAAGPLIEVNCASVVRELAESEFFGHTKGAFSGAIRDRAGWFEAAEGGTLFLDEI 332 Query: 483 GDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRL 542 ++PLELQ KLLRVLQE + R+G + DVR++AATNRDLK+ VA FR DL+YRL Sbjct: 333 AELPLELQGKLLRVLQEGRYARVGETRTRDADVRIVAATNRDLKEEVAAGRFREDLFYRL 392 Query: 543 NVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELE 602 NVFPI +PPLR+R D+P LA +I R + ++ E L L WPGNVREL Sbjct: 393 NVFPIRVPPLRDRAGDMPALAGHLLAQICRAMKVPPVTLDNEQLGRLQAHTWPGNVRELR 452 Query: 603 NVIERAVLLTRGNVLQLSL-----PDIVLPEPETPPAA--------TVVALEGEDEYQLI 649 NV+ERAV++ +++ D +P AA ++ E E + I Sbjct: 453 NVLERAVIVAASRKGPVAVRIDASTDASGAQPSVASAAGRADAGRVATLSELRERERENI 512 Query: 650 VRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKS 689 L G V GP GAA LG+K TTL SR+KR G+ K Sbjct: 513 AAALDACGGRVYGPSGAAALLGVKPTTLASRIKRYGLAKP 552 >UniRef50_C6MX44 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Geobacter sp. M18 RepID=C6MX44_9DELT Length = 460 Score = 499 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 152/411 (36%), Positives = 224/411 (54%), Gaps = 20/411 (4%) Query: 297 IQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIA----VDNALAYQE 352 + T LP G +L ++ AQ + V T ++ E + + + Sbjct: 49 VVTDMRLPGADGLEVLKAVRKAQPDTGVVVITGYADVQTAVEAMKLGAFDYIAKPFEPAH 108 Query: 353 IHRLKERL------VDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVL 406 + L ER V+++ L E++ F EI+ S +M SV ++M A++DS+V+ Sbjct: 109 LLSLVERFLCQTAHVEDSQRLREEVAE-HQRFEEIVSNSPSMLSVFNLIQMAAKTDSSVI 167 Query: 407 ILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRI 466 I GE+GTGKEL+A A+HN S R ++ +K+NCAA+P LLE+++ G+E+GAFTGA ++ Sbjct: 168 IYGESGTGKELVANAVHNRSPRLDKPFIKVNCAAIPENLLEAEMCGYEKGAFTGALQRKK 227 Query: 467 GRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLK 526 G+ E AD + F DE+GDM LQ KLLRVL+ + FER+G + + D+R I AT R L Sbjct: 228 GKLETADGGTFFFDEIGDMSFPLQAKLLRVLETRSFERVGGTEPVHVDIRFIFATMRRLP 287 Query: 527 KMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETL 586 + +FR DLYYR+NV PI LPPLRER +DIPLL F R+ GR + I E + Sbjct: 288 DEIRKGKFREDLYYRINVLPITLPPLRERADDIPLLLHFFVAHFCRKQGRQVLDIAPEAM 347 Query: 587 RTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPE------TPPAATVVAL 640 L + +PGNVREL++ +E AV V+ S + E A + + Sbjct: 348 ELLRSYPYPGNVRELKHAVEMAVTFCSDRVITPSCLPGEIREGSPALQGWRGDAGALESS 407 Query: 641 EGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSAL 691 E E Q I+ VLK+T G AA+ LG+ R TL ++K +D A+ Sbjct: 408 RKETERQTIINVLKKTGGR---KMAAAKALGISRETLWRKLKEYNVDTDAI 455 >UniRef50_Q1Q1B9 Strong similarity to sigma 54 response regulator protein n=3 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q1B9_9BACT Length = 469 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 146/406 (35%), Positives = 214/406 (52%), Gaps = 23/406 (5%) Query: 306 MSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIA----VDNALAYQEIHRLKERLV 361 ++G +L +K +V T + + + V YQE+ ++ + + Sbjct: 62 VNGLEVLNAVKTENPATEVIVITAYGAISTAVQAIREGAYDYVTKPFRYQEMLKVAKNAL 121 Query: 362 DENLALTEQLN------NVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGK 415 E L E+L + IIG S M VLK V++++STVLI GE+GTGK Sbjct: 122 -EKKELKERLKYLEGEVREKYKLEGIIGNSAVMVEVLKVTADVSRTESTVLITGESGTGK 180 Query: 416 ELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKS 475 ELIARAIH R+ V +NC A+P L ES+LFGH +G+FTGA +++G F A K Sbjct: 181 ELIARAIHYNGPRSGYPFVVINCGALPENLQESELFGHAKGSFTGAVKEKVGLFHHAHKG 240 Query: 476 SLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFR 535 ++FLDE+G+ Q KLLR LQ+ E ++G NK I DVR+IAATN +L++ V FR Sbjct: 241 TIFLDEIGETSASTQVKLLRFLQDGEIRQVGGNKSIHVDVRIIAATNENLERAVNQGRFR 300 Query: 536 SDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWP 595 DL+YR+NV IHLP L+ER EDIPLL F +L ++ + L N +WP Sbjct: 301 KDLFYRINVIRIHLPQLKERKEDIPLLVNYFLELYTDKLKKDKRVFSGSAMAVLLNYDWP 360 Query: 596 GNVRELENVIERAVLLTRGNVLQLSLPDIVL---------PEPETPPAATVVALEGEDEY 646 GN+REL+N++ERAV L++ V+ + + PE + +++V E E Sbjct: 361 GNIRELQNIVERAVALSKNQVIGVEALPLPTGGFVAHNSNPERDVTVKSSIVETLSEQEK 420 Query: 647 QLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSALI 692 IV + + G +Q LG+ TTL ++K+ I I Sbjct: 421 NAIVEAMNKYGG---NQTKVSQVLGISTTTLWRKIKKYKIKPQHEI 463 >UniRef50_B8FXH0 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8FXH0_DESHD Length = 703 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 165/463 (35%), Positives = 253/463 (54%), Gaps = 25/463 (5%) Query: 246 QHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCL--- 302 + +H + ++ E V ++ ++ + +++++ + D G ++Q + Sbjct: 244 EEVSHRLNSNEKLMATLEAVVENSYEGMVVIDDQENIVLMNQFFLDVIGVKVQDVIGKKI 303 Query: 303 --------LP--LMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQE 352 LP L SG G + + + + ++ +A + + + Sbjct: 304 NDISPNSSLPQTLKSGKAQFGETWHLKGRDFIIMRVPIEREGKVVGALAKTLFKNMEIAK 363 Query: 353 IHRLKERLVDENL-ALTEQLNNVDSE---FGEIIGRSEAMYSVLKQVEMVAQSDSTVLIL 408 + K ++ENL E+L S F +IIG S M +Q+ ST+LIL Sbjct: 364 MFAKKVMRLEENLAYYKEELGKFHSSQFVFDDIIGESPRMKKAKSLAHRASQTTSTILIL 423 Query: 409 GETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQ-RIG 467 GE+GTGKE+ + AIH S R+N +K+NCAA+P LLES+LFG++ GAFTGA + G Sbjct: 424 GESGTGKEVFSHAIHKSSIRSNGPYIKVNCAALPEDLLESELFGYDEGAFTGARKGGKPG 483 Query: 468 RFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKK 527 +FELADK ++FLDE+GDM L +Q KLLRVLQE+E ERLG + I+ DVR+IAATNRDL K Sbjct: 484 KFELADKGTIFLDEIGDMSLGMQAKLLRVLQERELERLGGTEPIKVDVRIIAATNRDLHK 543 Query: 528 MVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLR 587 MV + +FR DLYYRLNV I LPPLRER EDI +A+ KI +RLG +I + E++ Sbjct: 544 MVMEHKFRLDLYYRLNVLTIDLPPLRERKEDIGFIARGLIEKINKRLGTDIQGVRPESIT 603 Query: 588 TLSNMEWPGNVRELENVIERAVLLTRGNVL---QLSLPDIVLPEPETPPAATVVALEGED 644 L +WPGN+RELEN++ERA+++ + L+LP V+ T+ Sbjct: 604 HLCAYDWPGNIRELENILERAIVICDEAWILPKHLALPG-VMETITLGAEQTLEYALQAA 662 Query: 645 EYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 E +++ + L+ G AA+ LG+ R+ L ++ + I Sbjct: 663 EREILDKTLRRVQG---NKVQAARILGIHRSVLYKKLAKYNIQ 702 >UniRef50_B2S230 Formate hydrogenlyase transcriptional activator FhlA n=3 Tax=Treponema RepID=B2S230_TREPS Length = 600 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 177/520 (34%), Positives = 261/520 (50%), Gaps = 45/520 (8%) Query: 204 DELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQHPAHEQSEVDEAGTLTE 263 ++ + + ++ + +++VL L + + Sbjct: 89 EKSLEMILDALYEIARYE-LAVVLSFESSQILRVRKARGPLYTPRLQHHTIDLTKRQDLA 147 Query: 264 RVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEK 323 R+ K L + LA + Q + + PL DT +G+L L + Sbjct: 148 RILSQKSPYLFD----PTLAHTDTYTELIPMPQNHSCLIAPLYIDDTPIGMLTLDHRLCE 203 Query: 324 VFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIG 383 FT + + +++ +++AV A + + + L+ E AL L F +IG Sbjct: 204 QFTPDVVRFITTLSKLISLAVAQTDASETLSQKSHALLTERNAL---LAPQSPAFKNMIG 260 Query: 384 RSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPA 443 S A L +++VA SD VL+ GETGTGKEL+AR +H LS R+++ V +NC+A+ Sbjct: 261 TSPAWTRTLDAIKLVAASDLPVLVCGETGTGKELVARTVHQLSTRSDKPFVPVNCSALVH 320 Query: 444 GLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFE 503 L ES+LFGHE+GAF+GA GRFELA +LFLDEVGD+PLELQPKLLRVLQ+ FE Sbjct: 321 SLAESELFGHEKGAFSGAVGTHRGRFELAHGGTLFLDEVGDLPLELQPKLLRVLQDGVFE 380 Query: 504 RLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLA 563 R+G + + VR+IAATN +L + V +FR DL YRL+VFP+ LPPLRER ED+ LLA Sbjct: 381 RVGGERSVSVSVRIIAATNINLSEAVTQGKFREDLLYRLDVFPLSLPPLRERAEDVALLA 440 Query: 564 KAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSL-- 621 + F KI R G + + + ++ +PGNVREL N++ERA LL RG+ + Sbjct: 441 EHFIQKIKTRPGFERTQLSPSAFKKIFSLTFPGNVRELRNLLERAALLARGDTIGAEHLV 500 Query: 622 ---PDIVLPEPETPPAATVVALEGE---------------------DEYQLIVR------ 651 P+ P T V+ + +E L+V Sbjct: 501 CRTPESGTQTTVYPREHTEVSESVQPAIPLCIRDSSCMVRCTQGKKEETTLVVNFHQAQR 560 Query: 652 -----VLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 L +NG + G GAA+ LGLK +TL S+MK+LG+ Sbjct: 561 AAIQAALDASNGKIYGANGAAEILGLKPSTLQSKMKKLGL 600 >UniRef50_Q9APD9 Transcriptional regulatory protein zraR n=89 Tax=Proteobacteria RepID=ZRAR_KLEOX Length = 443 Score = 498 bits (1282), Expect = e-139, Method: Composition-based stats. Identities = 160/386 (41%), Positives = 229/386 (59%), Gaps = 12/386 (3%) Query: 306 MSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERV-AIAVDNALAYQEIHRLK----ERL 360 M G L +K V T + + E + + A+D + + +L+ E L Sbjct: 62 MDGIETLKEIKTFNPSIPVLIMTAYSSVDTAVEALKSGALDYLIKPLDFDKLQLTLSEAL 121 Query: 361 VDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIAR 420 L+ + ++FG ++G S AM ++L + +VA SD+TVLI GE+GTGKEL+AR Sbjct: 122 AHTRLSESPVTETPAAQFG-MVGDSPAMRALLNNITLVAPSDATVLIHGESGTGKELVAR 180 Query: 421 AIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLD 480 A+H S R+ R +V +NCAA+ LLES+LFGHE+GAFTGA +R GRF AD +LFLD Sbjct: 181 ALHASSARSRRPLVILNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 Query: 481 EVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYY 540 E+GD+ +Q +LLR +QE+E +R+GSN+ + DVRLIAAT+RDL + V+ FR DLYY Sbjct: 241 EIGDISPLMQVRLLRAIQEREVQRVGSNQTLSVDVRLIAATHRDLAEEVSAGRFRQDLYY 300 Query: 541 RLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRE 600 RLNV I +PPLR R EDIP LA+ F + A R + + + + L + WPGN+RE Sbjct: 301 RLNVVTIDMPPLRHRREDIPPLARYFLQRYAERNRKAVQGFTPQAMDLLIHYAWPGNIRE 360 Query: 601 LENVIERAVLLTRGNVL-QLSLPDIVLPEP--ETPPAATVVALEGEDEYQLIVRVLKETN 657 LEN +ERAV+L G + + LP + P + P + E E + I+ L+ T Sbjct: 361 LENAVERAVVLLTGEYISERELPLAITGTPVADAPHGDDSIQPLVEVEKEAILAALERTG 420 Query: 658 GVVAGPKGAAQRLGLKRTTLLSRMKR 683 G AA+RLG+ R TLL+++ R Sbjct: 421 G---NKTEAARRLGITRKTLLAKLSR 443 >UniRef50_A3ZZQ6 Nitrogen fixation protein anfA (Sigma-54 dependendent transcription regulator) n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZZQ6_9PLAN Length = 612 Score = 497 bits (1281), Expect = e-139, Method: Composition-based stats. Identities = 174/562 (30%), Positives = 271/562 (48%), Gaps = 41/562 (7%) Query: 131 IFGGCEF-IRYDDRPWSEKEFNRLQTFTQIVSVVTEQIQSRVVNNVDYELLCRERDNFRI 189 G EF +P + + + IV + Q + + ++ + Sbjct: 88 RVGATEFNFNSSSQPPTSYDSDANNMTQTIVRDLPVDPQDTNLVALRELKDYKQAQRLIL 147 Query: 190 LVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQHPA 249 L +L D D ++ + + + + KL L +Q P Sbjct: 148 LYQFAIKLLGSDDPDVIIRTALDLLKDHSKAAVVGFHWLTED-GKLK------LKRQLPE 200 Query: 250 HEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGD 309 + + +LT V + + I D + + D +PL+ Sbjct: 201 DVEDAFKLSESLTAMVCQQGHAVWIANEASQDESTRLKHFADA--------ICVPLIHKK 252 Query: 310 TMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTE 369 LG + L + E++ F +L+ +A + IA+ A ++ ERLV ++ A Sbjct: 253 QTLGTIHLYR-EQERFLQNDLDFTISLANILVIALSRAWELTKLQAGYERLVQQSAA--- 308 Query: 370 QLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRN 429 F E+IG S M + +++ +A++ V++ GE+G GKEL+ARA+H S R+ Sbjct: 309 --------FDELIGESRPMVELKQKIARIAKAGGAVMVRGESGAGKELVARALHKTSSRS 360 Query: 430 NRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLEL 489 +R M+ +NCAA+P L+ES LFGH++GAFTGA +G F+ AD +LFLDEVG+M L+ Sbjct: 361 DRPMLSVNCAALPESLIESQLFGHKKGAFTGADTDHVGFFQQADGGTLFLDEVGEMTLDG 420 Query: 490 QPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHL 549 Q KLLR+L+ F LG+ K + DVRLIAATNRDL + V ++ FR DLYYRL VF +++ Sbjct: 421 QAKLLRILEGHPFLPLGATKEVSVDVRLIAATNRDLAEFVREKRFREDLYYRLCVFELYI 480 Query: 550 PPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAV 609 PPLRER EDI LA F R+ GR + + L N +WPGNVR+L NV++ AV Sbjct: 481 PPLRERGEDIETLANHFLDHFKRQHGRPELMLSDAAKKKLLNYQWPGNVRQLRNVLDSAV 540 Query: 610 LLTRGNVLQ---LSLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGA 666 +L +++ L L D L EPE+ E +LI ++ T G V+ Sbjct: 541 VLADSAMIEPRDLGLRDAGLGEPESLRFDFW-------EKKLIEEAMERTGGNVS---ET 590 Query: 667 AQRLGLKRTTLLSRMKRLGIDK 688 + LG+ R TL ++ I + Sbjct: 591 IKLLGVSRATLYRKLDEYNIKR 612 >UniRef50_A9A0V6 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Deltaproteobacteria RepID=A9A0V6_DESOH Length = 465 Score = 497 bits (1280), Expect = e-139, Method: Composition-based stats. Identities = 147/362 (40%), Positives = 215/362 (59%), Gaps = 21/362 (5%) Query: 337 AERVAIAVDNALAYQEIHRLKERLVDENLALTEQLN--NVDSEFGEIIGRSEAMYSVLKQ 394 ++ V +A+ A +ERL EN+AL +Q+ FG+II +S+AM +V Sbjct: 113 SDEVLLALKKA-------SERERLKRENIALRQQIATLGRGYTFGKIIAKSKAMQAVTDL 165 Query: 395 VEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHE 454 + VA D+TVL+ GE+GTGKEL+AR++H S R ++ +NC +P LLES+LFGH Sbjct: 166 ITKVAAHDTTVLVTGESGTGKELVARSLHFNSPRAPNALIPVNCGGIPENLLESELFGHV 225 Query: 455 RGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTD 514 +GAFTGA + G E+A K +LFLDE+G++P LQ KLLR+LQ++E +G++ D Sbjct: 226 KGAFTGADKNKTGLCEIAHKGTLFLDEIGELPASLQVKLLRLLQDREIRPVGASATRTID 285 Query: 515 VRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRL 574 +R++AAT R+L+ VA+ FR DL+YRLNV IHLPPLR+R EDIPLL + F + ++L Sbjct: 286 IRIVAATARNLEADVAEGVFREDLFYRLNVLHIHLPPLRDRQEDIPLLIETFVQEFNKKL 345 Query: 575 GRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQL-SLPDIVLPEPETPP 633 + I + L L WPGNVRELEN+IERAV+L G+ + LP + P Sbjct: 346 DKTITGLAPAALSRLLAHTWPGNVRELENLIERAVVLAEGDTITPDDLPPGFGTDSAGGP 405 Query: 634 AATVVALEG--------EDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLG 685 + +G E +LI + L +T G ++ L + +LL++MK G Sbjct: 406 GDALAGFDGYSIKAAQKIFEKRLIEKALAKTGG---NRTRTSKLLEISHPSLLAKMKEYG 462 Query: 686 ID 687 I+ Sbjct: 463 IE 464 >UniRef50_C0Z5U4 Probable transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z5U4_BREBN Length = 548 Score = 497 bits (1280), Expect = e-139, Method: Composition-based stats. Identities = 147/417 (35%), Positives = 223/417 (53%), Gaps = 53/417 (12%) Query: 302 LLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLV 361 P+ ++G + + ++ L ++ E +A + +H L++ + Sbjct: 155 AAPIRREGEIIGAISI---------EQDITELVRLNEELAHTTAH------LHNLQQEMS 199 Query: 362 DENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARA 421 + D F I G S ++ S + + VAQ+D+TVLI GE+G GKEL A+A Sbjct: 200 --------RFQAADDPFYAIKGHSASIQSAIGSAKKVAQTDATVLIYGESGVGKELFAQA 251 Query: 422 IHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGA-SAQRIGRFELADKSSLFLD 480 IH S R+ + + +NC A+PA L ES+LFG++ GAFTGA + G+ ELA +LFLD Sbjct: 252 IHQASRRHEKPFIAINCGAIPAALFESELFGYQGGAFTGAEKKGKPGKLELAHGGTLFLD 311 Query: 481 EVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYY 540 E+G++PLELQ KLLR LQE++F R+G + I + R++AATNR L++MVAD FR DLYY Sbjct: 312 EIGELPLELQVKLLRALQERQFYRVGGTEPITVNTRIVAATNRQLEQMVADGRFREDLYY 371 Query: 541 RLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRE 600 RLNVF + +PPLRER ED+P L + F + + +++ I E ++ L WPGN+R+ Sbjct: 372 RLNVFSLEIPPLRERREDLPELVQIFIHEYSVAHDQSVPRISPEVMQALFEYTWPGNIRQ 431 Query: 601 LENVIERAVLLTRGNVL-QLSLPDIVLPEPE-------------------------TPPA 634 L NVIER +L V+ LP ++ E P Sbjct: 432 LRNVIERLSILQENGVILPEHLPSVIRSHTEPTHVSLHTPMGGTYAPPTTTPPPIIRPSI 491 Query: 635 ATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSAL 691 A +E + I+ L+ T G K AA+ LG+ R TL ++MK+ I++ + Sbjct: 492 AIAYPSSPANEKERILAALERTYG---NKKAAAELLGVSRGTLYNKMKKFNINEESF 545 >UniRef50_B8JAZ2 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Anaeromyxobacter RepID=B8JAZ2_ANAD2 Length = 481 Score = 497 bits (1280), Expect = e-139, Method: Composition-based stats. Identities = 165/423 (39%), Positives = 236/423 (55%), Gaps = 16/423 (3%) Query: 276 LHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQ 335 + E +D A + + + + T +P + G +L ++ A E +V T + Sbjct: 55 VEEAEDGASATQRVQHESFDVVLTDLRMPTVDGMEVLRAVQQASPETQVIVMTAYGTIES 114 Query: 336 IAERVAIAVDNALA--YQEIHRL--------KERLVDENLALTEQLNNVDSEFGEIIGRS 385 E + + LA ++E L K RL+ E E+ I+GRS Sbjct: 115 AVEAIRRGAYDFLAKPFKESEVLLRVAKALEKRRLLGEVNLFAEEFRK-RYGLEHIVGRS 173 Query: 386 EAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGL 445 AM VL +V VA +D+TVL+ GE+GTGKEL+ARA+H S R+++ V +NCAA+ L Sbjct: 174 PAMREVLDRVLRVAPTDATVLVTGESGTGKELVARALHVTSRRSDKPFVPVNCAAITDTL 233 Query: 446 LESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERL 505 LES+LFGH RGAFTGA+ R G FE A+ +LF+DE+G+ Q KLLR LQE E R+ Sbjct: 234 LESELFGHARGAFTGATRARRGMFEEANGGTLFIDEIGETSPGFQAKLLRALQEGEIRRV 293 Query: 506 GSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKA 565 G + +Q +VR+IAATN+DL++ +A+R FR DL+YRLNV P+ +PPLRER ED+PLLA Sbjct: 294 GESSPVQVNVRIIAATNQDLRRAIAERRFREDLFYRLNVVPLRIPPLRERREDVPLLAAH 353 Query: 566 FTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIV 625 F + +R G + E + +L +WPGNVRELEN+IE+A L G ++ + I Sbjct: 354 FLQRFVQRTGSE-RVLTPEAVASLVAHDWPGNVRELENIIEQAAALCTGREIRAADVQIE 412 Query: 626 LPEPETPPAATVVALEGED-EYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRL 684 A +A ED E + I L + A+ LG+ TTL +MKRL Sbjct: 413 ARAAPAGGAGVTLADAVEDTERRAITAALARCGNDLG---RVARDLGISGTTLWRKMKRL 469 Query: 685 GID 687 GI+ Sbjct: 470 GIE 472 >UniRef50_A7HIM1 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Myxococcales RepID=A7HIM1_ANADF Length = 495 Score = 497 bits (1280), Expect = e-139, Method: Composition-based stats. Identities = 155/360 (43%), Positives = 225/360 (62%), Gaps = 12/360 (3%) Query: 338 ERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEM 397 + + V+ ++ + AL E L + ++G SE M VL QV Sbjct: 134 DVLRARVEKSIEIARERKGARTARARAEALEEDLGRDRA--HGLVGSSEPMRRVLDQVRK 191 Query: 398 VAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGA 457 VA + +TVL+LGE+GTGKEL+ARAIH+ S R + V ++CAA+P GLLES+LFGHE+GA Sbjct: 192 VASTGATVLVLGESGTGKELVARAIHDASPRREQPFVSISCAAIPEGLLESELFGHEKGA 251 Query: 458 FTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRL 517 FTGA +++GRFELA+ +LFLDEVG++P +Q KLLRVLQE++FER+G + ++ DVR+ Sbjct: 252 FTGAIRRKLGRFELANGGTLFLDEVGEIPHAVQVKLLRVLQERQFERVGGEETVEVDVRV 311 Query: 518 IAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRN 577 ++ATNR+L +MV FR DLYYRLNV PI LPPLR+RP D+ LA+ F ++A R+ R Sbjct: 312 VSATNRNLAQMVESGRFREDLYYRLNVVPILLPPLRDRPGDVEELARFFVARLAPRMSRA 371 Query: 578 IDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQL-SLPDIVLPEPETPP--- 633 + + E L L WPGNVRELENVIE+A++ G +++ LP+ V P P Sbjct: 372 VTGLAPEALELLRRHRWPGNVRELENVIEQALVFAEGELVRPRDLPEGVRKAPPAPSLPV 431 Query: 634 ---AATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSA 690 ++ + + E QLI+ ++ GV A+ LG+K + L ++++ GI K+ Sbjct: 432 PSGDRSLTDILEDLERQLILAAYEKARGV---KAETARLLGIKPSALYYKLEKYGIVKAG 488 >UniRef50_C7LR14 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LR14_DESBD Length = 476 Score = 496 bits (1278), Expect = e-138, Method: Composition-based stats. Identities = 146/351 (41%), Positives = 214/351 (60%), Gaps = 9/351 (2%) Query: 343 AVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSD 402 AV+ E+ R + L + L E+ + F ++G S M V +E AQSD Sbjct: 132 AVETMTDLSELDRKENELQQLSRMLDEE-----TMFHGMVGHSAQMRRVFHLIEKAAQSD 186 Query: 403 STVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGAS 462 + V I GE+GTGKEL+ARAIH+L R+++ V+ NCAA+ LLES+LFGH +GAFTGA Sbjct: 187 APVFIYGESGTGKELVARAIHDLGPRSDQPYVQFNCAALNEALLESELFGHVKGAFTGAF 246 Query: 463 AQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATN 522 R GRFE A +FLDE+GD+P+ +Q KLLRVL+ + FER+G N+ + DVR+I ATN Sbjct: 247 RHRQGRFEAAHGGDIFLDEIGDLPMPVQVKLLRVLETKTFERVGDNRQLSVDVRIITATN 306 Query: 523 RDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIP 582 + L ++++ +FR DL+YR+NV P+HLP LRER EDIPLLA F ++ + ++I + Sbjct: 307 KVLPELISQGQFREDLFYRINVIPVHLPSLRERKEDIPLLADYFIQRLRMKSDKDIKGLS 366 Query: 583 AETLRTLSNMEWPGNVRELENVIERAVLLTR-GNVLQLSLPDIVLPEPETPPAATVVALE 641 +TLR + WPGNVREL++ +E A +L G++ LP V+ Sbjct: 367 PQTLRLFMDYSWPGNVRELKSSLEYAFVLADHGHIEPEHLPHNVVVTAPPVAEPRYGNPG 426 Query: 642 GEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSALI 692 + + Q +V+ L + G AA+ LG+ R T+L+RM++ GID + +I Sbjct: 427 HDSQRQQLVQALHQAGG---NKSEAARILGINRVTVLNRMRKHGIDMTRVI 474 >UniRef50_A9G6P0 Sigma-54 dependent DNA-binding response regulator n=2 Tax=Myxococcales RepID=A9G6P0_SORC5 Length = 481 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 177/454 (38%), Positives = 240/454 (52%), Gaps = 42/454 (9%) Query: 275 NLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLR 334 +H +D L + + + T +P + G +L V T + Sbjct: 31 EVHTAEDGEEGLAFLKEHHIDLVITDLRMPKVDGMDLLRAALRDDPSRPVVLLTAHGTVD 90 Query: 335 QIAERVAIA----VDNALAYQEIH-----RLKERLVDENLALTE----QLNNVDSEFGEI 381 E + + E+ L+ R + A + Q FG I Sbjct: 91 NAVEALKTGAFDYITKPFDQNEVRVVVKKALRTRDLASADATRDVSAAQPRGGSDRFG-I 149 Query: 382 IGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAM 441 IG S + + +E VA + +TVLI GE+GTGKEL+ARA+H SGR +R +K+NCAA+ Sbjct: 150 IGESPPIQELYAILERVADTPTTVLISGESGTGKELVARALHENSGRRDRPFIKVNCAAI 209 Query: 442 PAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQE 501 P L+ES+LFG+ERGAFTGA A + GRFELA +LFLDE+G++P E+Q KLLRVLQE E Sbjct: 210 PKDLMESELFGYERGAFTGAVASKPGRFELASGGTLFLDEIGEIPNEMQVKLLRVLQESE 269 Query: 502 FERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPL 561 FER+G K I DVRL+AATNRDLK+ +A FR DL+YRLNV PI LP LR+R DIP Sbjct: 270 FERVGGIKTIHVDVRLVAATNRDLKREIAAGTFREDLFYRLNVVPIALPALRDRRSDIPH 329 Query: 562 LAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQL-S 620 L F K RL ++I+SI E L L++ WPGN+RELENV+ERA+L G ++L Sbjct: 330 LCAHFVAKFNARLKKSIESIEPEALERLASHAWPGNIRELENVVERALLFADGARIRLDD 389 Query: 621 LPDIVL-----------------------PEPETPPAATVVALEGEDEYQLIVRVLKETN 657 LP+ + P V A + E LI R LK+T+ Sbjct: 390 LPEEIRGGATSAPGAALPLAAAAADTSAAPSTPDGLKEQVKAAMSKLERDLIERALKQTH 449 Query: 658 GVVAGPKGAAQRLGLKRTTLLSRMKRLGI-DKSA 690 G V AA+ L + R L +MK L + ++ A Sbjct: 450 GNV---THAARLLKISRKGLQLKMKELNLRERDA 480 >UniRef50_Q1D552 Sigma-54 dependent DNA-binding reponse regulator Nla6 n=8 Tax=Cystobacterineae RepID=Q1D552_MYXXD Length = 484 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 153/439 (34%), Positives = 238/439 (54%), Gaps = 22/439 (5%) Query: 249 AHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSG 308 H+ + + + + ++++ + L ++ ++ L Sbjct: 27 GHKVEIAFDGHDALRKANEFRPDVVLSDLAMPETDGL--WLLRNLKEELPDCPVVFLTGR 84 Query: 309 DTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALT 368 T+ ++ + F L+ R+ + +D AL +E R E L Sbjct: 85 GTIDAAVESIREGAYDFIVKPLDT-----ARLKVCIDRALEKKETMR-------EVQTLR 132 Query: 369 EQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGR 428 +L + S ++I +S M V++ VE VA S ++V I GE+GTGKE+++RA+HNLS R Sbjct: 133 RRLKQLGS--SDLIAQSVGMRKVIELVEKVAPSKASVSISGESGTGKEVVSRAVHNLSLR 190 Query: 429 NNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLE 488 ++ + +NCA++PA L+ES+LFGHERGAFTGA +R G FE+A +LFLDE+G++P+E Sbjct: 191 RDKPFIAINCASIPATLIESELFGHERGAFTGADQRRPGVFEMAHGGTLFLDELGEIPIE 250 Query: 489 LQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIH 548 LQ KLLRVL+E + RLG I+ DVR++ ATNRDLK+ + + FR DLY+RLNVF IH Sbjct: 251 LQAKLLRVLEEGKLRRLGGKVEIEVDVRVLCATNRDLKQEIKNGRFREDLYFRLNVFQIH 310 Query: 549 LPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERA 608 LPPLRER +D+P+L + F K G+ + + E + L N +WPGN+REL N +ERA Sbjct: 311 LPPLRERRDDVPILVQHFVDKFRGDSGKRVSGVHPEAMEVLKNYDWPGNIRELRNAVERA 370 Query: 609 VLLTRGNVLQLSL--PDIVLPEPETPPAATVVALEGE-DEYQLIVRVLKETNGVVAGPKG 665 V+L G ++ PD+ PE L + E + I+ L+ Sbjct: 371 VILCDGELITREHLPPDMAGKSPERHTFRLPFGLSLDAVEREYILGSLQRNGN---NKAR 427 Query: 666 AAQRLGLKRTTLLSRMKRL 684 A+ LG+ TL +++ R Sbjct: 428 TAEVLGVSEKTLYNKLNRY 446 >UniRef50_B2A1V9 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A1V9_NATTJ Length = 585 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 157/519 (30%), Positives = 263/519 (50%), Gaps = 52/519 (10%) Query: 186 NFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDK 245 N+ I I+++V + ++ A + + IV+ H I + Sbjct: 98 NYYIFEDISDSVKLKRELSNA-RSSANAMENVLEKAYDGIVMIDHNG----IITKFNSAY 152 Query: 246 QHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPL 305 Q + +TE + ++ +H+ + E +P+ Sbjct: 153 QQFTGISEQEALGKHVTEVIENTR------MHKVLETGKPEIGEIQKIKGCEMVATRVPI 206 Query: 306 MSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENL 365 ++GVL ++ ++ +AER+ A + E+ K + Sbjct: 207 YEEGEIVGVL-------GKVLFRDIKEVKALAERLDAATN------ELDYYKGEV----- 248 Query: 366 ALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNL 425 +L F I+G S+ + + ++ +QSDSTVLI GE+GTGKEL A AIH+ Sbjct: 249 ---RKLKGSKYNFENIVGSSKKIIEAKEMAKIASQSDSTVLIRGESGTGKELFAHAIHDG 305 Query: 426 SGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASA-QRIGRFELADKSSLFLDEVGD 484 S R +++NCAA+P LLE++LFG+E+GAFTGA+ + G+FELA+ ++FLDE+GD Sbjct: 306 SLRRYGAFIRVNCAAIPENLLEAELFGYEKGAFTGANKEGKPGKFELANGGTIFLDEIGD 365 Query: 485 MPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNV 544 MP ++Q KLLR LQE+E +R+GS ++I DVR+IA+TNR+L++++A +FR DLYYRLNV Sbjct: 366 MPFDMQVKLLRALQEREVQRIGSERVIDLDVRIIASTNRNLEQLIAQDKFREDLYYRLNV 425 Query: 545 FPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENV 604 F I++PPLRE +D+ L + +G N++ + +E + L++ WPGN+REL+NV Sbjct: 426 FNINVPPLREMKDDLEKLINFIIKDLNDEMGLNVNGVSSEANKILNSYHWPGNIRELKNV 485 Query: 605 IERAVLLTRGNVLQLS-LPDIVLPEPETPPAA---------------TVVALEGEDEYQL 648 +ER++ + +GN++ +P +L + ++ E E Sbjct: 486 LERSMNVAKGNIITKDCIPQYLLTWAGAEEQQNNSNSKSHEINLHNLELRSVVKEAEKLA 545 Query: 649 IVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 I LK+TN K AA+ L + R+ L +++ I Sbjct: 546 IETALKQTNN---NKKKAAELLNIHRSGLYKKLEEYNIS 581 >UniRef50_C7PDE5 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PDE5_CHIPD Length = 651 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 170/530 (32%), Positives = 268/530 (50%), Gaps = 24/530 (4%) Query: 181 CRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRS------HRKNK 234 + + IT + D + + ++A+ + D I+ LR + K Sbjct: 127 TKNNQEIHVQKQITEIITENSDNQQKLLKIAEIMQTCVPFDLITSGLRPLNTGQYNDKGY 186 Query: 235 LNIYSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLIN-------LHERDDLAPYER 287 L + Y + + + + + + ++E+ ++ ++ Sbjct: 187 LRVGFDEYQFIGEKEL-LTITNLKRPALSVILANSHLDINTNIYNNDPVNEKPNVPSLQK 245 Query: 288 MLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNA 347 L DT+ IQ+ + P++ + ++ ++T +++LL + +A + Sbjct: 246 TLIDTFN--IQSYLVFPVVLSNGQSFHYFFYSRQKNIYTNIHISLLDNLRTGLATLAEKM 303 Query: 348 LAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLI 407 + + + K V L N EF IIG + L VA +++VLI Sbjct: 304 IYGENLAISKNTPVHYERKLQGNTLN-YPEFRSIIGNHHLLLGALDLAAQVAFYNTSVLI 362 Query: 408 LGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIG 467 LGE+GTGKE +A+AIH LS R N + +NCAA+P L+ES+LFGHE+GAFTGA +R G Sbjct: 363 LGESGTGKEKLAQAIHLLSPRKNAPFITVNCAAIPVALIESELFGHEKGAFTGAIEKRKG 422 Query: 468 RFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKK 527 +FE AD ++FLDE+G++ E+Q K+LR LQE+E + +G N + + +VR+IAATNR+L+K Sbjct: 423 KFEQADGGTIFLDEIGELSPEMQVKILRFLQEKEIQCIGGNSLTKVNVRVIAATNRNLEK 482 Query: 528 MVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLR 587 VA FR DLYYR+NVFPI LP LRER DI L+ F K + I + Sbjct: 483 EVAAENFRLDLYYRINVFPITLPSLRERRSDIKELSIYFAEKFCSEFNKPFHGIVTSMME 542 Query: 588 TLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALE------ 641 + +WPGN+RELENVIE++ +L G +L L + + P + E Sbjct: 543 EMIAYDWPGNIRELENVIEQSAILNDGKS-KLELKRTLTGKATIPVTTPIKTFEDVKNIQ 601 Query: 642 GEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSAL 691 E E + I+ VLK+ +G V G GAAQ + +K TTL S+M +L I + L Sbjct: 602 AETEREYIISVLKQADGRVRGANGAAQLMNIKPTTLESKMAKLKIRREDL 651 >UniRef50_Q21UU9 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Proteobacteria RepID=Q21UU9_RHOFD Length = 474 Score = 495 bits (1274), Expect = e-138, Method: Composition-based stats. Identities = 153/410 (37%), Positives = 223/410 (54%), Gaps = 28/410 (6%) Query: 301 CLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIA----VDNALAYQEIHRL 356 ++P M G +L +K E V T L+ ++ + + + + E+ + Sbjct: 54 VMMPKMDGLEVLQHVKERHPEIDVIMMTGLSEIQTAVKAMKLGAFDYLSKPFDPDELKLV 113 Query: 357 ------KERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGE 410 + +L+ EN L ++++ F IIG S M +V + A ++STVLI GE Sbjct: 114 VNRALERRQLMQENRKLKTEVSS-KYRFENIIGSSPPMQAVFGLIAKCAPTNSTVLITGE 172 Query: 411 TGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFE 470 +GTGKE+IARAIH S R ++ V ++C + LLES+LFGH +G+FTGA A + G F+ Sbjct: 173 SGTGKEMIARAIHYNSLRKDQPFVTVDCNTLSENLLESELFGHTKGSFTGAVANKRGMFD 232 Query: 471 LADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVA 530 +A+ +LFLDE G++PL Q KLLRV+QE+EF +G+ +T+VRLI ATN+DLK MVA Sbjct: 233 VANNGTLFLDEFGNIPLSTQAKLLRVIQEREFRPVGTTTNQKTNVRLITATNKDLKAMVA 292 Query: 531 DREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLS 590 + FR DLYYR+NVFPIH P LRER +DIP LA F LG+ + I + L Sbjct: 293 EGTFREDLYYRINVFPIHSPALRERRDDIPALAFHFLKIFCSELGKPVSEISEGAMSLLM 352 Query: 591 NMEWPGNVRELENVIERAVLLTRGNVL-QLSLPDIVLPEPETPPAATVVALE-------- 641 N WPGNVRELEN ++RAV+L+ ++ Q L I+ P + E Sbjct: 353 NYGWPGNVRELENTMQRAVILSSDGIIRQAHLASIIDNSPRLDLDVPRTSDELKRIKKIA 412 Query: 642 -----GEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 E E + LK + +A+ G++RT + MK+ I Sbjct: 413 REKSVEEVEKLFVQETLKR---NASNVTRSAEETGMQRTNFQALMKKYNI 459 >UniRef50_B8FGF3 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Bacteria RepID=B8FGF3_DESAA Length = 1047 Score = 495 bits (1274), Expect = e-138, Method: Composition-based stats. Identities = 168/495 (33%), Positives = 260/495 (52%), Gaps = 20/495 (4%) Query: 195 NAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSH-RKNKLNIYSTHYLDKQHPAHEQS 253 + D DEL+ EV + + + + + L + L +Q Sbjct: 565 KVLDQIEDEDELLYEVIRRQLLLLIAERGVLFVPDPNDEASLIFRTGCNLSRQETGSPSF 624 Query: 254 EVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLG 313 L R F +++ L + D + LP+++ + G Sbjct: 625 RASLD--LVARAFHEDAVIVEGLPQDPD---------APAELGRRRALALPILAPGHLRG 673 Query: 314 VLKLAQCE-EKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLN 372 V+ L F +LL+ AE +A V N + + + RL +++ Sbjct: 674 VIYLESMYVNDAFDLVPHSLLKLGAEHLARYVHNLVECIRLRQEASRLAS-----FKEIR 728 Query: 373 NVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRR 432 + II RS AM+ +L+Q EM A+S++T+L+ GETGTGKEL+ + IH+ S R+ Sbjct: 729 FGQRKDDSIITRSRAMFQILEQAEMAARSEATLLVTGETGTGKELLVKRIHHFSNRSKGP 788 Query: 433 MVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPK 492 MV ++ +P L+ES+LFGHE+GAFTGA ++++G E+A + +LF+DE+G++P + Q K Sbjct: 789 MVTVDSTTIPENLVESELFGHEKGAFTGADSRKLGLIEMAHEGTLFIDEIGELPPQTQVK 848 Query: 493 LLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPL 552 LLR L+ + F R+G + +++D RL+AATNR L K V FR DLYYRLNV + LPPL Sbjct: 849 LLRALESRTFHRVGGAQAVKSDFRLVAATNRSLAKEVEQGRFRQDLYYRLNVIHLVLPPL 908 Query: 553 RERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLT 612 RER +D+ +LA+ F + G + L+ WPGNVREL+NVIERAV+L+ Sbjct: 909 RERGDDVIVLARHFLDHYCSKYGFKPLNFNRRDEDMLTAYSWPGNVRELKNVIERAVILS 968 Query: 613 RGNVLQLSLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGL 672 G L + D V + E + E + + I +VL++T G + GP GAA+ LG+ Sbjct: 969 GGRRPALDIRDGV--QAEGRDFFSGAPTMEEVQRRYITKVLEKTKGRIDGPGGAAEILGM 1026 Query: 673 KRTTLLSRMKRLGID 687 KR+TL SRM +LG+ Sbjct: 1027 KRSTLYSRMYKLGLK 1041 >UniRef50_Q3A2M3 Two component, sigma54 specific, transcriptional regulator, Fis family n=16 Tax=Bacteria RepID=Q3A2M3_PELCD Length = 492 Score = 495 bits (1274), Expect = e-138, Method: Composition-based stats. Identities = 153/363 (42%), Positives = 214/363 (58%), Gaps = 24/363 (6%) Query: 338 ERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEM 397 E + + V+NAL ++ R ENL L ++L F IIG+S+ M V +E Sbjct: 133 EEIRLVVENALERMDLRR-------ENLQLKKELGQ-RFSFANIIGKSKVMQGVYDLIEK 184 Query: 398 VAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGA 457 V+ S VLI GE+GTGKEL+ARAIH S R++R V + C A+P LLES+LFGHE+GA Sbjct: 185 VSASKVNVLITGESGTGKELVARAIHYNSDRHDRPFVAIYCGAIPENLLESELFGHEKGA 244 Query: 458 FTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRL 517 FTGA Q+ G FE+AD +LFLDE+ ++P +Q KLLRV+QE EF ++G + ++ DVRL Sbjct: 245 FTGAVQQKQGLFEVADGGTLFLDEIAELPPMMQVKLLRVIQEHEFRKVGGTRDLKVDVRL 304 Query: 518 IAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRN 577 +AATN+DL + V + +FR DLYYRLNV + LPPLR+R EDIPLL F K+ Sbjct: 305 VAATNKDLAQAVTEDQFREDLYYRLNVIQVGLPPLRDRREDIPLLVSHFLQKLTPGFS-- 362 Query: 578 IDSIPAETLRTLSNMEWPGNVRELENVIERAVLL-TRGNVLQLSLPDIVLPEPETPPAAT 636 +IP +R + WPGN+RELEN +ER V+L +G + + SLP +L T Sbjct: 363 -TTIPDGVMRRFLDYHWPGNIRELENTVERCVVLGGKGEITEDSLPPHMLCISGTGDQQL 421 Query: 637 VVALE---------GEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 E G E ++++ L T GV K AA+ L + ++ R+ + GI+ Sbjct: 422 TELPEEGLDLDDYLGAIEKDILLKALDRTGGV---RKRAAELLHITFRSIRYRLAKFGIE 478 Query: 688 KSA 690 Sbjct: 479 AEG 481 >UniRef50_Q53206 Nif-specific regulatory protein n=5 Tax=Alphaproteobacteria RepID=NIFA_RHISN Length = 594 Score = 495 bits (1274), Expect = e-138, Method: Composition-based stats. Identities = 177/570 (31%), Positives = 269/570 (47%), Gaps = 58/570 (10%) Query: 165 EQIQSRVVNNVDYELLCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDIS 224 + + + + + + L I+ +++ ++ ++ V + + + Sbjct: 32 KNWLDECMTELSPKTMHKRDLGCSGLYRISKVLITSASLEIKLANVINTLPALLPMRRGA 91 Query: 225 IVLRSHRKNKLNIYSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAP 284 IV+ + +T + P + A +R+ L++ + +L Sbjct: 92 IVVVGAE-GEPETTATFGV---EPPSSGARHIAAKAAIDRIVAKGAPLVVPDTCKSELFQ 147 Query: 285 YERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFT----TTNLNLLRQIAERV 340 E G T +P+ + LG L + + ++ T + L +A Sbjct: 148 DELQSI-VSGTGQVTFIGVPMKADQETLGTLWIDRAKDGAATRTQFEEEVRFLSMVANLA 206 Query: 341 AIAV----DNALAYQEIHRLKER-LVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQV 395 A AV + + I +R + + L E + I+G S A+ V++ V Sbjct: 207 ARAVRLNGHESRDSRPIGEEGDRKISGGDKELPEPTRQRPTRIDWIVGESPALRQVVESV 266 Query: 396 EMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHER 455 ++VAQ++S VL+ GE+GTGKE A+AIH LS R + VK+NCAA+ AG+LES+LFGHE+ Sbjct: 267 KVVAQTNSAVLLRGESGTGKEFFAKAIHELSPRRKKPFVKLNCAALSAGVLESELFGHEK 326 Query: 456 GAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDV 515 GAFTGA +QR GRFELAD +L LDE+G++ Q KLLRVLQE E ER+G K ++ DV Sbjct: 327 GAFTGAISQRAGRFELADGGTLLLDEIGEISPAFQAKLLRVLQEGELERVGGTKTLKVDV 386 Query: 516 RLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLG 575 RLI ATN+DL+ VA+ EFR+DLYYR+NV P+ LPPLRER DIP LAK F + R Sbjct: 387 RLICATNKDLETAVAEGEFRADLYYRINVVPLFLPPLRERNGDIPRLAKVFLDRFNRENN 446 Query: 576 RNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLS--------------- 620 RN++ L LS ++PGNVRELEN + R L R + S Sbjct: 447 RNLE-FTPAALEILSRCKFPGNVRELENCVRRTATLARSATIVPSDFSCQNDQCFSSMLG 505 Query: 621 --------------------LP---DIVLPEPETPPAATVVALEGEDEYQLIVRVLKETN 657 LP L P P TV + +L++ +++ Sbjct: 506 KTADRPLGSHSLNGLAMSKRLPVESPASLGYPAGPGGLTVAPHLSD--RELLISAMEKAG 563 Query: 658 GVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 V A AA+ LGL + ++R I Sbjct: 564 WVQA---KAARILGLTPRQVGYALRRHHIQ 590 >UniRef50_C0QRG3 Transcriptional regulatory protein ZraR n=2 Tax=Aquificales RepID=C0QRG3_PERMH Length = 442 Score = 495 bits (1274), Expect = e-138, Method: Composition-based stats. Identities = 154/391 (39%), Positives = 225/391 (57%), Gaps = 9/391 (2%) Query: 302 LLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIA----VDNALAYQEIHRLK 357 L+P +SG + LK + V T L + + + ++E+ + Sbjct: 55 LMPELSGLEFIDRLKERDIKTPVILMTAYGSLEDAVLAMKKGAFHYITKPINFEELKIII 114 Query: 358 ERLVDENLALTEQLNNVDSEFG-EIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKE 416 ++ + E L ++LN + S +II S M VL+ + +A D+TVLI GE+GTGKE Sbjct: 115 DQAL-EVSDLKKELNELKSLLSTDIIAESPQMKQVLETAKKIAPFDTTVLITGESGTGKE 173 Query: 417 LIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSS 476 +IA IH S R R + +NC A+P+ LLES+LFG+++GAFTGA+ + G E A+ + Sbjct: 174 MIANFIHKNSLRKERPFIAINCGAIPSELLESELFGYKKGAFTGANTDKKGLIEEAEGGT 233 Query: 477 LFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRS 536 LFLDE+G++PL+LQ KLLRVLQE E + +GSN+ + DVR IAATNRDLKKMV + +FR Sbjct: 234 LFLDEIGELPLDLQVKLLRVLQENEIKPIGSNRPKKIDVRFIAATNRDLKKMVEEGKFRE 293 Query: 537 DLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPG 596 DLYYR+NV PIH+PPLRER EDI LA+ F K R G + + L N ++ G Sbjct: 294 DLYYRINVIPIHIPPLRERKEDIIPLAQYFINKFCSRYGIPKKRLSEKAREKLLNYDYKG 353 Query: 597 NVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKET 656 NVRELEN+IERAVL T G + + + + E E + +L++T Sbjct: 354 NVRELENIIERAVLTTEGEEITDIPVTVSKRYILSQELKPFKEAKKEFEESYLKNLLEKT 413 Query: 657 NGVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 + ++ A++ G+ R + +KR GI+ Sbjct: 414 DFNIS---KASKIAGITRAQIYRMIKRYGIE 441 >UniRef50_Q12K16 DNA-binding protein Fis / transcriptional regulator, Fis family n=23 Tax=Alteromonadales RepID=Q12K16_SHEDO Length = 495 Score = 494 bits (1273), Expect = e-138, Method: Composition-based stats. Identities = 161/387 (41%), Positives = 235/387 (60%), Gaps = 18/387 (4%) Query: 304 PLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDE 363 P+ G M+GV+ + R I+ + + A ++ L E+L E Sbjct: 115 PVYQGSVMVGVIAI---------------FRDISVQKQTELSLRQALNQVQALSEQLAAE 159 Query: 364 NLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIH 423 N L + L + G I G S M +L+Q+ +VA ++STVLI GE+GTGKEL+AR +H Sbjct: 160 NHELQQALADKTGNMG-IKGSSPVMAHLLQQIHLVANTNSTVLICGESGTGKELVARNLH 218 Query: 424 NLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVG 483 LS R ++ MV +NCAA LLES+LFGHE+GAFTGA+ QR G+FE ADK +LFLDEV Sbjct: 219 QLSRRKHKLMVSVNCAAFSPSLLESELFGHEKGAFTGANTQRKGKFEQADKGTLFLDEVA 278 Query: 484 DMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLN 543 ++ LE Q KLLRV+QEQEF+RLG + I+ D+RLIAA++ +L + V FR DLYYRLN Sbjct: 279 ELSLEAQSKLLRVIQEQEFQRLGGSSNIKIDIRLIAASHHNLLERVEQGLFRMDLYYRLN 338 Query: 544 VFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELEN 603 VFPIH+PPLR+R ED+P L ++ I+++L + I + + L WPGNVREL+N Sbjct: 339 VFPIHVPPLRDRLEDMPELVESMLLNISKKLAKKITCVSQAGMAELKAYHWPGNVRELQN 398 Query: 604 VIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGP 663 ++ER +L++ + L + + E + + + I L++ N ++G Sbjct: 399 ILEREAILSQASELDIH--QLPFKELSKIKPSANRQTLAQAQATHIRHTLEQLNWQISGE 456 Query: 664 KGAAQRLGLKRTTLLSRMKRLGIDKSA 690 GAA++LGL +TL S+M++LGI + Sbjct: 457 HGAAKQLGLPASTLRSKMQKLGIVRQD 483 >UniRef50_A4J599 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J599_DESRM Length = 575 Score = 494 bits (1273), Expect = e-138, Method: Composition-based stats. Identities = 161/509 (31%), Positives = 270/509 (53%), Gaps = 31/509 (6%) Query: 199 SRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQHPAHEQSEVDEA 258 S LD ++L E+ + + ++V R+++ + L + S + V E Sbjct: 76 SSLDEEDLEREILAFLPE---LRYHALVCRNNQGDILGVLSYDQVFH----DLALRVCET 128 Query: 259 GTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLA 318 V ++ + + + D + + + +G + Q + P+ S T L V ++ Sbjct: 129 EARINAVVETVDEAVCIVDNNDMVTSWNSRAEELYGIKAQDIIGKPICSFFTNLVVTRVN 188 Query: 319 -------QCEEKVFTTTNL---NLLRQIAERVAIAVDNALAYQEIHRLKERLVD---ENL 365 + T++ ++ +V V EI +L ++L + Sbjct: 189 KEWQEIRSLHHQPVPGTHVLINATPVRLGPKVIGGVTAERDVTEIVQLNQKLNQASSQVQ 248 Query: 366 ALTEQLNNV---DSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAI 422 L ++++ + F + G + + ++ A + + VL+ GE+GTGKEL A+AI Sbjct: 249 RLEKEIDKFSTDRNPFAAVKGHHKRLTELINVARKAALTSAVVLLRGESGTGKELFAKAI 308 Query: 423 HNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQ-RIGRFELADKSSLFLDE 481 H S R +++ +NCAA+P L ES++FG+E GAFTGA + +IG FE+AD +LFLDE Sbjct: 309 HEASPRIDKKFCVINCAAIPPSLFESEMFGYESGAFTGADKKGKIGVFEMADGGTLFLDE 368 Query: 482 VGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYR 541 + ++PL++Q KLLRVLQ+ F R+G + I+ DVR+IAATNR L+ M+A FR DLYYR Sbjct: 369 ISELPLDMQVKLLRVLQDGVFFRIGGSTPIKVDVRIIAATNRSLEDMMAHGTFREDLYYR 428 Query: 542 LNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVREL 601 LNV + +PPLRER EDIP L F + ++ + I + + T WPGN+R+L Sbjct: 429 LNVVSLEIPPLRERREDIPELVYLFLQEFSQLYNKQISKLEPGVMATFLAYSWPGNIRQL 488 Query: 602 ENVIERAVLLTRGN-VLQLSLPDIVL---PEPETPPAATVVALEGEDEYQLIVRVLKETN 657 +N+IER V+LT G+ VL+ ++P+ + + + + ++ + E +LI+R LK+ N Sbjct: 489 KNIIERMVILTEGDTVLESAIPESLKLSSRQDQATATIGLASVTEQTERELIIRTLKQVN 548 Query: 658 GVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 G AA+ LG+ R+TL +M +LGI Sbjct: 549 G---NRSEAARMLGIPRSTLYYKMHQLGI 574 >UniRef50_B9M8I7 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Geobacter sp. FRC-32 RepID=B9M8I7_GEOSF Length = 678 Score = 494 bits (1273), Expect = e-138, Method: Composition-based stats. Identities = 169/457 (36%), Positives = 240/457 (52%), Gaps = 36/457 (7%) Query: 246 QHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCL--- 302 + AHE V E E V + + L E + + G + Sbjct: 234 EGVAHELETVKELKMTLETVLEVAYEGVAVLDEAGMITLVNARFCNKIGKPKDNIIGENI 293 Query: 303 ---LPLMSGDTMLGVLKLAQC-------------EEKVFTTTNLNLLRQIAERVAIAVDN 346 +PL L VL++ K F L +A+ V Sbjct: 294 NRFIPLSHNQMPLSVLEINAKPCVVSTLPITKEGNTKGFVVKIYEDLDNLADIV------ 347 Query: 347 ALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVL 406 Q+I+R+ +L L + +N G I+ R E + ++ QV V +S+STVL Sbjct: 348 ----QQINRINMQLNYYKNELYK-VNGTSYTVGSIVCRDERIATLKSQVLQVGRSNSTVL 402 Query: 407 ILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQ-R 465 I GE+GTGKEL A +IHN S R +K+NC+A+P L E++LFG+E GAFTGA Q + Sbjct: 403 ITGESGTGKELFAHSIHNASNRRKEPFIKVNCSAIPGELAEAELFGYEDGAFTGARKQGK 462 Query: 466 IGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDL 525 G+FELAD ++FLDE+GDMPL LQ KLLRV+Q++E ER+G K + DVR+IAATNRDL Sbjct: 463 PGKFELADCGTIFLDEIGDMPLALQSKLLRVIQDKEIERVGGVKARKVDVRIIAATNRDL 522 Query: 526 KKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAET 585 K+MV + FR DLY+R+NV + +PPLR+R +DIPLLA F K +LGR ++ I Sbjct: 523 KRMVTEGTFREDLYFRINVVELKIPPLRDRRKDIPLLADTFIRKYNNQLGRRVEGITEAA 582 Query: 586 LRTLSNMEWPGNVRELENVIERAVLLTRGNVLQL-SLPDIVLPEPETPPAATVVALEGED 644 L L+ +WPGN+RELEN+IER + +++L LP+ ++ P A L Sbjct: 583 LEALTRYDWPGNIRELENIIERMLNYRESGLIELQDLPEEIVGRPGGMAAKATQTL-AVM 641 Query: 645 EYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRM 681 E + I L E G AA+ LG+ R+ L ++ Sbjct: 642 EMETIQAALAEAGG---NKSKAARLLGISRSKLYEKL 675 >UniRef50_A6LYP8 Sigma54 specific transcriptional regulator, Fis family n=3 Tax=Clostridiaceae RepID=A6LYP8_CLOB8 Length = 574 Score = 494 bits (1272), Expect = e-138, Method: Composition-based stats. Identities = 146/433 (33%), Positives = 240/433 (55%), Gaps = 33/433 (7%) Query: 258 AGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKL 317 + E + ++ +++ + + ++ I + +P++ ++GV+ Sbjct: 171 GRHVNEVIENTRMPIVLETGKEE----VAQLHKIKGSYMIAS--RIPIVKNGEIIGVV-- 222 Query: 318 AQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSE 377 N+ L + +R+++ +E+ K R + N + Sbjct: 223 -----GKVLFRNVKELNSLYKRISVI------EKELATYKSRF--------REFNKANYS 263 Query: 378 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMN 437 IIG SE + VE A ++S VLILGE+GTGKE+ A AIH+ S R+ VK+N Sbjct: 264 LENIIGESEPIVMAKAIVEKAAHTNSNVLILGESGTGKEIFAHAIHSESNRHEGPFVKVN 323 Query: 438 CAAMPAGLLESDLFGHERGAFTGASA-QRIGRFELADKSSLFLDEVGDMPLELQPKLLRV 496 CAA+P+ LLES+LFG+E GAFTGA +IG+FE+A++ ++FLDE+GDMPL +Q KLLRV Sbjct: 324 CAAIPSDLLESELFGYEAGAFTGAKKEGKIGKFEIANEGTIFLDEIGDMPLHMQVKLLRV 383 Query: 497 LQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERP 556 +QE+E E++G + ++R+IAATNR+L+++V + +FR DLYYRLNV I +PPLRER Sbjct: 384 IQEREVEKVGGVASKKINIRIIAATNRNLERLVEEGKFREDLYYRLNVVTIEIPPLRERG 443 Query: 557 EDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAV-LLTRGN 615 DI L++ K++ L + + I E + L EW GNVRELEN++ERA+ ++ Sbjct: 444 NDIILISNHLIKKLSVDLDKKVKGISKEAEQYLKIYEWKGNVRELENILERAINIMENSE 503 Query: 616 VLQL-SLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKR 674 ++Q+ LP + + + + + E E I+ L+ +G AA+ L + R Sbjct: 504 IIQVKDLPKEITGKKVSMVPKKLQDILAESEKNAIILALRAADG---NKSKAAKILDIGR 560 Query: 675 TTLLSRMKRLGID 687 T+L ++++ I Sbjct: 561 TSLYEKIEKYKIQ 573 >UniRef50_A6M003 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Bacteria RepID=A6M003_CLOB8 Length = 472 Score = 494 bits (1272), Expect = e-138, Method: Composition-based stats. Identities = 144/360 (40%), Positives = 208/360 (57%), Gaps = 17/360 (4%) Query: 338 ERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEM 397 + V I V A+ Q++ + L E +++ G+I+G S + V K + Sbjct: 120 DEVKIIVSRAIRMQQLTKEVVYLTQE----VQEMGMTAMTPGKIVGESSKIQEVYKIIGR 175 Query: 398 VAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGA 457 VA S +TVL+ GE+GTGK ++A+AIH S R + +++NC ++P GLLES++FGHE+GA Sbjct: 176 VANSKATVLLTGESGTGKGMVAKAIHYASDRREKPFIQVNCGSIPEGLLESEIFGHEKGA 235 Query: 458 FTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRL 517 FT A Q+ G+FELA+ +LFLDE+ +M LQ KLLRVLQE+EFER+G K T+VR+ Sbjct: 236 FTSAFFQKPGKFELAEGGTLFLDEIAEMSPNLQVKLLRVLQEKEFERVGGTKTFHTNVRI 295 Query: 518 IAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRN 577 IAATNRDL K ++++ FR DLYYRLNV I LPPL ER EDI LLA F + + +GRN Sbjct: 296 IAATNRDLNKEISEKSFRKDLYYRLNVVSICLPPLCERGEDIVLLADYFLKRFSVEVGRN 355 Query: 578 IDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATV 637 E L N WPGN+RELEN +E A++++ V+ + + + T+ Sbjct: 356 GMFFAPEVLDIFRNYSWPGNIRELENAVEHAIIMSNTRVILPENLPLSIKVEDVEADGTI 415 Query: 638 V----------ALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 + + E E + I ++ T G AA+ L + R LL ++ ID Sbjct: 416 ILGDDSFKPLREVLLEVEKRHISEAIERTGG---NRTQAAKLLQISRRALLYKINENNID 472 >UniRef50_B3E7V2 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Desulfuromonadales RepID=B3E7V2_GEOLS Length = 466 Score = 494 bits (1272), Expect = e-138, Method: Composition-based stats. Identities = 169/392 (43%), Positives = 224/392 (57%), Gaps = 37/392 (9%) Query: 316 KLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIH-RLKERLVDENLALTEQLNNV 374 L E +F LNL + + V AL YQ + R+ E+ VDE Sbjct: 90 TLPHDERLIFLPKPLNL-----DELESVVMRALEYQALKVRMPEQPVDE---------YP 135 Query: 375 DSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMV 434 IIGRS M ++ + +E VA+S +TVLI GE+GTGKEL ARAIH LS R+++ V Sbjct: 136 HFLCSTIIGRSRQMLNLFEMIEKVAESSATVLIQGESGTGKELAARAIHQLSSRSSKNFV 195 Query: 435 KMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLL 494 +NCAA+P LLES+LFGH +G+FTGA A RIGRFE+ADK +LFLDE+GDM LQ KLL Sbjct: 196 PVNCAAIPDDLLESELFGHVKGSFTGAYANRIGRFEMADKGTLFLDEIGDMKATLQVKLL 255 Query: 495 RVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRE 554 RVLQ +EFE +GS + + DVR+IAA+N++L + VA R+FR DLYYRL+V PI +PPLR+ Sbjct: 256 RVLQAKEFEPVGSTRSQKVDVRIIAASNKNLDEQVATRDFREDLYYRLSVIPITIPPLRD 315 Query: 555 RPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRG 614 R EDIPLL F + R R + E L L N +WPGNVRELEN++ER + + Sbjct: 316 RREDIPLLINHFQGQFNRDRRRLVKGFTREALEMLCNYDWPGNVRELENLVERMITMKES 375 Query: 615 NVLQLSLPDIVLPEPET-------------------PPAATVVALEGEDEYQLIVRVLKE 655 + + P T P + + E LI++ L Sbjct: 376 GFITVDDLPEKYLAPRTVVAPPLSVSGSVPVGKELPPEGICLNSAVDAFENGLIMQALHR 435 Query: 656 TNGVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 T G K AA L LKRTTL+ ++K+ + Sbjct: 436 TGG---NKKEAAALLNLKRTTLIEKLKKKNLQ 464 >UniRef50_B0K647 Sigma54 specific transcriptional regulator, Fis family n=12 Tax=Firmicutes RepID=B0K647_THEPX Length = 544 Score = 493 bits (1271), Expect = e-138, Method: Composition-based stats. Identities = 152/359 (42%), Positives = 219/359 (61%), Gaps = 21/359 (5%) Query: 337 AERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVE 396 ++ AV + +I L+ L + +D F IIG S + L Sbjct: 195 GTKIEGAVIVFYDFPQIEYLENELKRD--------RKLDKAFDIIIGNSGKLKDALTIAS 246 Query: 397 MVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERG 456 A++DSTVLI GE+GTGKEL+A AIH S R ++ +++NCAA+P LLES+LFGHERG Sbjct: 247 KAAETDSTVLIRGESGTGKELVANAIHYASKRKDKPFIRVNCAAIPVTLLESELFGHERG 306 Query: 457 AFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVR 516 AFTGA Q+IG+FELAD ++FLDE+GD+P E+Q KLLRV+QE+EFER+G K I+ DVR Sbjct: 307 AFTGAVTQKIGKFELADGGTIFLDEIGDIPPEIQVKLLRVIQEKEFERVGGIKTIKVDVR 366 Query: 517 LIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGR 576 +IAATN+DL+K + + FR DLYYRLNV P+ LPPLRER DIPLL + F K+ ++L + Sbjct: 367 IIAATNKDLEKAIKEGTFREDLYYRLNVIPVILPPLRERRGDIPLLVEHFIEKLNKKLNK 426 Query: 577 NIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQL-SLPDIVLPEPETPPAA 635 N+ + + ++ L +WPGN+RELEN+IER + L+ + + LP + E T Sbjct: 427 NVKKVTKKAMQALIYYDWPGNIRELENIIERCITLSDTDYIDYEDLPQYIRNETTTVSDD 486 Query: 636 TVVAL--------EGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 ++ L E EY++I ++ A + LGL T+ ++ ++ G+ Sbjct: 487 DIIYLGENSELLTMEEYEYKIIKAAIQRYKSF----NKAGKVLGLTHKTIAAKARKFGL 541 >UniRef50_A9GEU8 Protein kinase n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GEU8_SORC5 Length = 1501 Score = 493 bits (1270), Expect = e-138, Method: Composition-based stats. Identities = 172/527 (32%), Positives = 262/527 (49%), Gaps = 38/527 (7%) Query: 185 DNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLD 244 + R L A+ A+ R + L+ V + + ++ ++LR+ +L + L Sbjct: 988 EQARDLEALVGALGERERLAPLLDRVVDALVLWTGVERGLLLLRAP-NGRLVPRAARNLA 1046 Query: 245 KQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLP 304 + EQ + E TL R +++E ++ D + +++++ +P Sbjct: 1047 RSRLGAEQLALSE--TLARRALEAREPVV----AVDAAGELPSVHHSVHALKLRSVLAVP 1100 Query: 305 LMSGDTMLGVLKLA-QCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDE 363 L++ LGV+ L + F L R IA A+A+ +A A E+ R R Sbjct: 1101 LVARGEALGVVYLDDRVRRGAFGAQELRWARAIASVAALAISDARAQVELRRAARRAERA 1160 Query: 364 NLALTEQL--------------------NNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDS 403 + L E+L + + IIG SE + ++L+ V+ V S+ Sbjct: 1161 SSRLAEELARREAELDAAALELARARGGRDTRYRYDAIIGESEPLRAMLRLVDRVTASEV 1220 Query: 404 TVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASA 463 VL+ GE+G+GKEL+ARAIH+ R V NC A+P GLLES LFGH RG+FTGA Sbjct: 1221 PVLVCGESGSGKELVARAIHHNGPRAAHAFVSENCGAIPEGLLESALFGHVRGSFTGADR 1280 Query: 464 QRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNR 523 R G FE+AD+ +LFLDE+G+M L +Q KLLRV+++ +GS + + DVR+IAAT+R Sbjct: 1281 PRAGLFEVADRGTLFLDEIGEMSLAMQTKLLRVIEDGLVRPIGSERARKVDVRVIAATHR 1340 Query: 524 DLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPA 583 DL +V R FR DL YRLN+ I +PPLRER D+PL+ + K + R + Sbjct: 1341 DLAALVRARAFREDLLYRLNIITIRVPPLRERATDVPLIVQHLVEKHS----RGPVRVTR 1396 Query: 584 ETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGE 643 + LS WPGNVR+LEN I RA++L G + + L + P + + Sbjct: 1397 GAMERLSACAWPGNVRQLENEIRRAIVLCDGTIDREHLSPEIAHGGNATPRELGLNVRAR 1456 Query: 644 ---DEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 E +L+ L+ T G AA+ LGL R L +KRL I+ Sbjct: 1457 IDALETELVRDALERTRG---NQTQAAKLLGLSRFGLQKMIKRLSIE 1500 >UniRef50_Q1Q0T6 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q0T6_9BACT Length = 472 Score = 493 bits (1270), Expect = e-137, Method: Composition-based stats. Identities = 151/388 (38%), Positives = 214/388 (55%), Gaps = 29/388 (7%) Query: 315 LKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNV 374 + +E VF I E +AV AL L EN L + L + Sbjct: 98 FAIDIMKEGVFDYLVAPFDNDILE---LAVKRALKVSS-------LTIENKNLRKAL-EL 146 Query: 375 DSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMV 434 FG IIG S ++ L+ V V ++DSTVL+ GE+GTGKEL++RAIH S R V Sbjct: 147 QYNFGNIIGNSPSVVETLRLVGEVTRTDSTVLVTGESGTGKELVSRAIHYNSDRKCGPFV 206 Query: 435 KMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLL 494 +NCAA+P LLES+LFG+E+GAFTGA + GRFELA + FLDE+ +M +Q K+L Sbjct: 207 ALNCAAIPENLLESELFGYEKGAFTGAEKTKKGRFELAAGGTFFLDEISEMSAAVQAKVL 266 Query: 495 RVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRE 554 R+++ +E ERLG I+ DVR+I ATNRDL +MV + +FR DLYYR++VFPI LP LRE Sbjct: 267 RIIESKELERLGGTDTIKVDVRIICATNRDLVQMVKEGKFRDDLYYRISVFPIMLPALRE 326 Query: 555 RPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRG 614 R DI L+K F + ++G+ + +E + L +W GN+REL+N+IERAV+L + Sbjct: 327 RSGDIIPLSKHFVNHFSAKMGKTPIVLSSEVEKILIKHKWEGNIRELQNIIERAVILCKN 386 Query: 615 NVLQLSLPDIVLPEPETPPA---------------ATVVALEGEDEYQLIVRVLKETNGV 659 V++ + TPP + E QL+ + L+ + Sbjct: 387 GVIRTEHLPTSIVHGYTPPELNENISQNNSVNFDIPPNGLSLDDLEKQLVAKALERSKNN 446 Query: 660 VAGPKGAAQRLGLKRTTLLSRMKRLGID 687 + AA+ LGL R T R+++ GI Sbjct: 447 I---TKAAKLLGLTRGTFRYRLQKYGIS 471 >UniRef50_D0LMB6 Sigma 54 interacting domain protein n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LMB6_HALO1 Length = 507 Score = 493 bits (1270), Expect = e-137, Method: Composition-based stats. Identities = 160/506 (31%), Positives = 263/506 (51%), Gaps = 8/506 (1%) Query: 184 RDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYL 243 D L +T+ + S+ D ++++ + + + D D ++ +L + + Sbjct: 6 NDYSHDLHVLTSMLASKRAPDLILAQALEALSHLIDYDLAAVYELHGD--ELRVVAAAGP 63 Query: 244 DKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDD-LAPYERMLFDTWGNQIQTLCL 302 RV + + + + D PY+ +L G + + Sbjct: 64 LASEQVRAHRLALSKFPNIRRVLEVRRPVAFEDSDHADHGDPYDGVLDLPHG---HSCMV 120 Query: 303 LPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVD 362 +PL + + +G++ + + + + + L + V++A+ A + R ++L + Sbjct: 121 IPLRADEADMGIITIDRLRCETYDARAVRLADVYGQLVSLALWFANREAILRRNNQQLSE 180 Query: 363 ENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAI 422 N L E+ + G S M+ ++ Q + VA S++ VL+LGETGTGKEL+A+AI Sbjct: 181 HNRLLLEESGATWACRRLEAGASAQMHELVAQAKKVAVSNAPVLVLGETGTGKELLAQAI 240 Query: 423 HNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEV 482 H S R + +K+NCAA+P L+ES+LFGH RGAF+GA + R GRF A++ +L LDE+ Sbjct: 241 HEWSARASGPFIKLNCAAIPENLVESELFGHVRGAFSGAESARRGRFVTANRGTLLLDEI 300 Query: 483 GDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRL 542 G++PL Q KLLRVLQE E +GS+ + DVR++AATN DL V FR DLYYRL Sbjct: 301 GELPLPAQAKLLRVLQEGVLEPVGSDDSYRVDVRIVAATNVDLVAAVDAGWFRRDLYYRL 360 Query: 543 NVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELE 602 FP+ +PPLRER DI +A+ ++ GR ++ A + L WPGNVREL Sbjct: 361 ATFPLQVPPLRERRADIAPIARDVLRELHASTGRGPWTLSAPAVEALERNGWPGNVRELR 420 Query: 603 NVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALE--GEDEYQLIVRVLKETNGVV 660 NV+ERA ++ + + + + + P AA+ L +E + R+L+ + G + Sbjct: 421 NVLERATIIVQAGEIGAAKLRLEVAPPSRELAASCAELPDFSANERAYLARLLERSGGKL 480 Query: 661 AGPKGAAQRLGLKRTTLLSRMKRLGI 686 G GAA+ GLK +TL S++ + G+ Sbjct: 481 YGEGGAAELSGLKPSTLRSKLVKHGL 506 >UniRef50_Q6MMW8 Acetoacetate metabolism regulatory protein atoC n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MMW8_BDEBA Length = 470 Score = 492 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 161/404 (39%), Positives = 231/404 (57%), Gaps = 22/404 (5%) Query: 303 LPLMSGDTMLGVLKLAQCEEKVFTTT-NLNLLRQIAERVAIAVDNALAYQEIHRLKE--R 359 +P M+G L +K V T + NL + A D + +L E R Sbjct: 62 MPEMNGLEALTAIKEHDPRTFVVLMTAHSNLHDAVVAIKEGAYDYVEKPVQPQQLAEIVR 121 Query: 360 LVDENLALTEQLNNVDSEFG-----EIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTG 414 E L L + F EI+G S M V + + + D+TVL+ GE GTG Sbjct: 122 KSLEARDLISSLAMSNPVFDDDIESEIVGGSSKMKEVFNLIYRLCKVDTTVLVRGENGTG 181 Query: 415 KELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADK 474 KEL+ARAIH S R + V +NC A+P L+ES+LFGHE+GAFTGA ++IG+F+LA+ Sbjct: 182 KELVARAIHFNSPRKSGAFVAINCGAIPENLMESELFGHEKGAFTGAVERKIGKFQLANN 241 Query: 475 SSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREF 534 +LFLDE+G++ ++Q KLLRVLQE++F +GSN+ ++T R+IAATNR+L+KM+ + EF Sbjct: 242 GTLFLDEIGELRPDMQVKLLRVLQERKFTPVGSNREVKTTTRIIAATNRNLEKMMEEGEF 301 Query: 535 RSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEW 594 R DL+YRLNV PI LPPLRER +DI LA F K +++ GR I +I E L L + W Sbjct: 302 REDLFYRLNVMPIFLPPLRERADDIEALAGNFIKKFSKQHGRQITAITPEALDMLKSYRW 361 Query: 595 PGNVRELENVIERAVLLTRGNVLQLS-LPDIVLPEPETPPAATVV----------ALEGE 643 PGN+RELEN+IER+ ++ + + + LPD + P+ T A + E Sbjct: 362 PGNIRELENIIERSFIVENSHQITVDSLPDSIKLTPKDGADKTASVGYSGPLDFDAFKEE 421 Query: 644 DEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 E + IV LK NG + A + + TLL ++++ GI+ Sbjct: 422 MEKEFIVSALKANNGRINQTVAQA---NIPKNTLLRKIRKYGIN 462 >UniRef50_Q1D1F9 DNA-binding reponse regulator HsfA n=3 Tax=Myxococcus RepID=Q1D1F9_MYXXD Length = 485 Score = 492 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 164/450 (36%), Positives = 243/450 (54%), Gaps = 32/450 (7%) Query: 259 GTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLA 318 +T+ + + ++ + LA + D I+ +P +SG +L +K Sbjct: 20 KAVTQILQREGHPVVAIDDAVEGLAAAKDPTIDVVVLDIK----MPNLSGMDLLRGIKAD 75 Query: 319 QCEEKVFTTTNLNLLRQIAERVAIAVDNALA--YQEIH---------RLKERLVDENLAL 367 + + +V T + E V + L ++ I ++ L D AL Sbjct: 76 RPDVEVIMMTAFATVETAVEAVKAGAYDYLTKPFENIDEVSLTVAKAAERKALKDRTRAL 135 Query: 368 TEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSG 427 E L V S+F ++IG+S M SV K VE V+ S +TVLI GE+GTGKEL+ARAIH S Sbjct: 136 EEAL-TVRSQFEDLIGQSTQMRSVFKLVETVSHSTATVLIQGESGTGKELVARAIHYRSA 194 Query: 428 RNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPL 487 R ++ V +NC+A+ LLES+LFGH +G+FTGA+ + G FE AD ++FLDE+GD+P Sbjct: 195 RKDKPFVAVNCSALTETLLESELFGHVKGSFTGATGNKKGLFEAADGGTIFLDEIGDVPP 254 Query: 488 ELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPI 547 Q +LLRVLQE E +R+G+N+ ++ DVR+IAAT+ DL + +FR DL+YRLNV I Sbjct: 255 ATQVRLLRVLQEGEVKRVGANEPVKVDVRVIAATHVDLSRAKEQGKFREDLFYRLNVITI 314 Query: 548 HLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIER 607 LPPLR+RPED+PLLA F A + + + I + L+ W GNVRELENVIER Sbjct: 315 DLPPLRDRPEDVPLLAHHFLKLYASKADKKVTGISPRAMEALTCNRWTGNVRELENVIER 374 Query: 608 AVLLTRGNVLQL-SLPDIVLPEPETPPAATVVAL------------EGEDEYQLIVRVLK 654 AV+LT V+ + LP P+ V +L E + + +L+ Sbjct: 375 AVVLTGNEVIDVEDLPPGFQSAPQPDSTVEVFSLAHLPYAQAKRLAMRAFERRYLSALLE 434 Query: 655 ETNGVVAGPKGAAQRLGLKRTTLLSRMKRL 684 + N V+ AA+ G+ R+ +K+ Sbjct: 435 KNNQNVSS---AARAAGVDRSNFRRLLKQY 461 >UniRef50_B2S3B3 Response regulatory protein n=28 Tax=Spirochaetales RepID=B2S3B3_TREPS Length = 458 Score = 492 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 168/465 (36%), Positives = 254/465 (54%), Gaps = 23/465 (4%) Query: 222 DISIVLRSHRKNKLNIYSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDD 281 SI++ KN I + + +E ++ T E K L+I + Sbjct: 2 KFSILVLDDEKN---IREGLQMALEDEGYEVFTAEDGNTGVEIALKGDIDLIITDLKMPR 58 Query: 282 LAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVA 341 ++ ++ + + ++ L T+ ++ F T L+L R++ Sbjct: 59 MS--GELVLQHVHAVLPDIPIIILTGHGTVENAVEAMHKGAYDFLTKPLDL-----NRLS 111 Query: 342 IAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQS 401 + V AL +E L+ ++ L +Q+ N S F I+G S AM V V+ A S Sbjct: 112 LLVRRALQNRE-------LIVQHRELIKQIGNRTS-FENIVGESPAMNKVFDMVKKAAAS 163 Query: 402 DSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGA 461 ++VLI GE+G GKELIA AIHNLS R + ++K++CA+ G+LES+LFGHERGAFTGA Sbjct: 164 KASVLITGESGVGKELIANAIHNLSPRKAKPLIKVHCASFAEGVLESELFGHERGAFTGA 223 Query: 462 SAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAAT 521 + GRFELA + S+FLDE+G++ + +Q KLLRVLQE+ FER+G + I+ DVR+I+AT Sbjct: 224 VNRMKGRFELAHEGSMFLDEIGEVSMAVQIKLLRVLQERSFERVGGRETIKVDVRVISAT 283 Query: 522 NRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSI 581 NR+L + + FR DLYYRLNV IH+P LRER ED+PLL F +IA G+ I SI Sbjct: 284 NRNLLEEIKRNLFREDLYYRLNVVHIHVPALRERKEDLPLLIATFLKEIAEENGKKITSI 343 Query: 582 PAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQL-SLPDIVLPEPETPPAATVVAL 640 + L +WPGN+R+L N IE AV+++ G V+ + L + + ET + + Sbjct: 344 DPQAQSALHAYDWPGNIRQLRNCIESAVIMSSGPVIHIEDLSEPIRSLGETSSIRIPIGV 403 Query: 641 EGED-EYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRL 684 ED E ++I++ L+ G A LG+ R TL ++ + Sbjct: 404 SMEDAEKEIILQTLEAQKG---NKSKTADVLGIGRKTLYLKLDQY 445 >UniRef50_D2R4Q9 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R4Q9_9PLAN Length = 644 Score = 492 bits (1267), Expect = e-137, Method: Composition-based stats. Identities = 160/517 (30%), Positives = 264/517 (51%), Gaps = 29/517 (5%) Query: 181 CRERDNFRILVAITNAVLS---RLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNI 237 + R L AI V M+ L+ +A+ + + SI L L Sbjct: 141 QQSRARLARLEAIVGLVAQWRQHSAMEPLLVSIAETSTRLLEAERASIFLWDRASKTLVG 200 Query: 238 YSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQI 297 ++ + E + +V S E+ ++ D +R + + Sbjct: 201 RPALGVEGGEL-----RIPENAGIVGQVVASGEVRRVDADIEADQREVDRRVDKKLKFET 255 Query: 298 QTLCLLPLM-SGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRL 356 +++ +PL +G +LG ++ + FT + L ++A A A+++ + + + Sbjct: 256 RSILCVPLRGAGGVLLGAFEVLNKRQGNFTRDDELALVELAAHAATALESTQTIENLVQT 315 Query: 357 KERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKE 416 +++LVD + E++G ++ ++ V+ VA +D VLILGE GTGKE Sbjct: 316 RKQLVDH-----------AASGVELVGECASIGALRSAVKRVADTDLAVLILGENGTGKE 364 Query: 417 LIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSS 476 ++A++IH LS R + + +NCAA+ LLES+LFGHE+GAFT A R+G+FELA + Sbjct: 365 VVAQSIHYLSKRRHEPFIAVNCAAISESLLESELFGHEKGAFTDAREMRVGKFELAADGT 424 Query: 477 LFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRS 536 LFLDE+GDM L Q KLLRVL+E+ R+G + I T R++AATN++L ++V + FR Sbjct: 425 LFLDEIGDMSLGGQAKLLRVLEEKVVVRVGGSVPIPTKARVLAATNQNLAELVRAKRFRE 484 Query: 537 DLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPG 596 DL++RLNV + LPPLR R EDI LLA+ F + A R R + A + L WPG Sbjct: 485 DLFFRLNVVSLDLPPLRARGEDIVLLAEHFLKQFAARARRRLPKFTAAARKRLLMHPWPG 544 Query: 597 NVRELENVIERAVLLTRG--NVLQLSLPDIVLPEPETPP----AATVVALEGEDEYQLIV 650 N+REL N++ER L + + + +L +P T+ E + + I Sbjct: 545 NIRELRNLMERLAYLAPEDQDKIDAGDLEFILSPGTSPATSLGDGTLADATREFQMEFIH 604 Query: 651 RVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 + ++ T G + AA+++GL+R+ L +M++L +D Sbjct: 605 KTIESTRGNM---TLAAEKMGLQRSNLYRKMRQLQMD 638 >UniRef50_B5YI42 AdnA n=3 Tax=Bacteria RepID=B5YI42_THEYD Length = 324 Score = 492 bits (1267), Expect = e-137, Method: Composition-based stats. Identities = 145/321 (45%), Positives = 211/321 (65%), Gaps = 18/321 (5%) Query: 381 IIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAA 440 IIG+S + +L ++ ++++D+T LI+GE+GTGKEL+A+ IH S R + + +NCAA Sbjct: 2 IIGQSIQIQRILTFIDKLSKTDTTALIMGESGTGKELVAKMIHQKSSRAEKPFIPVNCAA 61 Query: 441 MPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQ 500 +P+ LLES+LFGHE+GAFTGA R GRFELA++ ++FLDE+GDMPL LQ K+LRV+QE+ Sbjct: 62 IPSELLESELFGHEKGAFTGAQNCRYGRFELANEGTIFLDEIGDMPLHLQVKILRVIQEK 121 Query: 501 EFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIP 560 FER+G + IQ +VR+IAATN+DL+ V + FR DL++RLNV P+ +PPLRER EDIP Sbjct: 122 TFERIGGTRPIQVNVRIIAATNKDLENEVKEGRFREDLFWRLNVVPVVIPPLRERKEDIP 181 Query: 561 LLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQL- 619 LL + F K + + G ++ I E ++ N WPGNVRELEN+IER +L G + + Sbjct: 182 LLCEYFINKFSHKFGYSL-QIKPEVMQIFLNYTWPGNVRELENLIERLYVLNEGGNINIK 240 Query: 620 SLPD-----------IVLPEPETPPAATVVALE--GEDEYQLIVRVLKETNGVVAGPKGA 666 +P+ ++P+ P ++ + E E E +LI+ L + A Sbjct: 241 DIPERIRFGENSFQKELIPDDLNPFSSGIDLNEVLKEYEKKLILHALNLHGWI---KSRA 297 Query: 667 AQRLGLKRTTLLSRMKRLGID 687 A+ L + RTTL+ +MKRL I Sbjct: 298 AKYLNINRTTLIEKMKRLNIK 318 >UniRef50_C1ZJW6 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains n=2 Tax=Planctomyces RepID=C1ZJW6_PLALI Length = 662 Score = 492 bits (1267), Expect = e-137, Method: Composition-based stats. Identities = 152/516 (29%), Positives = 253/516 (49%), Gaps = 27/516 (5%) Query: 177 YELLCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLN 236 + R ++ + + + ++L++ +A+E D D SI + Sbjct: 158 TIKAQERAEKLREILKLAAQLANEQQTEKLLTRIAEEATRLLDCDRASIFIWDREH---- 213 Query: 237 IYSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQ 296 + + + + V ++ LI + + + R + + G + Sbjct: 214 -HEVIACPALGVEGGSLRLSDKVGVVGEVI--AKVQLIRVDDAYADPRFHRKVDASSGYK 270 Query: 297 IQTLCLLPLMS-GDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHR 355 L PL +LG ++ + F+ + L + ++A A+ N R Sbjct: 271 TSNLLCGPLRDLDGKVLGAFEVINHRQGPFSQEDEITLLDLCIQIAAALQN-------TR 323 Query: 356 LKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGK 415 +E LV N LTEQ++ I+G S A+ ++ + +A +D VLILGE+GTGK Sbjct: 324 ERELLVTSNRQLTEQVSRGV----NIVGESPAIVAMRSTIRRLAGTDLPVLILGESGTGK 379 Query: 416 ELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKS 475 E++A ++H R +R + +NCAA+ LLES+LFGHERG+FT A R G+FELA+ Sbjct: 380 EVVASSLHYQGSRADRPFIAVNCAALTETLLESELFGHERGSFTDAHEMRRGKFELAEGG 439 Query: 476 SLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFR 535 ++FLDE+GD+ Q KLLRVL+++ R+G ++ I + R+IAATN L + V ++FR Sbjct: 440 TIFLDEIGDLSAGGQAKLLRVLEQKVITRVGGSQTIPINARVIAATNARLAEAVRAKKFR 499 Query: 536 SDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWP 595 DLY+RLNV + +PPLRER +D+ LA+ F + A + R + AE R L + WP Sbjct: 500 EDLYFRLNVVTLEIPPLRERADDVLPLAEYFLEQFAVQARRGKMHLSAEARRRLQSHAWP 559 Query: 596 GNVRELENVIERAVLLTRGNVLQLSLPDIVLPEP-----ETPPAATVVALEGEDEYQLIV 650 GNVREL N++ER L +++ +L E + + + I Sbjct: 560 GNVRELRNLMERVAFLAPAERIEVEDLAFILSPERDSFHEPSLDMGLSEATNSFQQEYIR 619 Query: 651 RVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 R +K ++ AA+ LGL R+ L +M++L + Sbjct: 620 RAIKRVRNNMS---EAARLLGLHRSNLYRKMRQLDM 652 >UniRef50_Q1IL93 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Acidobacteria RepID=Q1IL93_ACIBL Length = 484 Score = 492 bits (1267), Expect = e-137, Method: Composition-based stats. Identities = 162/403 (40%), Positives = 228/403 (56%), Gaps = 21/403 (5%) Query: 302 LLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAY-QEIHRL---- 356 LP +G +L ++ E V T + + N + + +L Sbjct: 72 ALPDRNGIEILKEIRSRDTEISVIMITAYGTVENAVNAMQAGATNFIQKPWDNEKLLADV 131 Query: 357 -----KERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGET 411 + R+ +ENL L L F IIG+SE M + V +A S STVL+ GE+ Sbjct: 132 GAAIARRRVEEENLQLKRALKQ-RYNFENIIGKSEPMLRIFDLVTQIAPSRSTVLLQGES 190 Query: 412 GTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFEL 471 GTGKELIA+AIH S R +R V +N +MP LLES LFGH +GAFT A A + G FE+ Sbjct: 191 GTGKELIAKAIHMNSTRKDRAFVPINTGSMPTDLLESTLFGHVKGAFTSAIASKKGLFEV 250 Query: 472 ADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVAD 531 AD +LFLDE+G M +E Q K+LRVLQ+++F LG + IQ DVR+IAATN DL+++V + Sbjct: 251 ADGGTLFLDEIGTMSMETQAKILRVLQDRKFMHLGGVQEIQVDVRIIAATNVDLRQLVKE 310 Query: 532 REFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSN 591 +FR DL+YRLNV I LPPLR+R D+PLL + F K + + + E LR L + Sbjct: 311 GKFREDLFYRLNVITIDLPPLRQRRLDVPLLCEHFIKKFCEENAKPLMRMTPEALRPLLD 370 Query: 592 MEWPGNVRELENVIERAVLLTRGNVLQLS-LPDIVLPEP------ETPPAATVVALEGED 644 W GNVRELENVIERAV+L G + + LPD V+ ET P A++ + + Sbjct: 371 YNWQGNVRELENVIERAVVLANGPSITIDLLPDNVVGRGSSLSFVETRPDASLFEIMEDC 430 Query: 645 EYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 E ++IV +L++ AA++ + +TL ++KRL I+ Sbjct: 431 ERRIIVDMLEKVGW---NQTEAAEKFRIPLSTLNQKIKRLSIE 470 >UniRef50_B8FD65 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FD65_DESAA Length = 447 Score = 492 bits (1267), Expect = e-137, Method: Composition-based stats. Identities = 163/340 (47%), Positives = 226/340 (66%), Gaps = 21/340 (6%) Query: 365 LALTEQLNNVDSE--FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAI 422 ++E LN +++ F EI+ +S+AM VL Q++ VA +DSTVLI GE+GTGKEL+A +I Sbjct: 110 RQVSEVLNRIEARKLFPEIVAQSKAMRQVLSQIKRVAPTDSTVLITGESGTGKELVADSI 169 Query: 423 HNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEV 482 H S RN RR VK+NCAA+P LLES+LFG+E+GAFTGA+A++ G+FE A+ ++FLDE+ Sbjct: 170 HRHSQRNGRRFVKINCAAIPDTLLESELFGYEKGAFTGAAARKPGKFEQANGGTVFLDEI 229 Query: 483 GDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRL 542 GDMPLE Q K+LRVL+E+E +RLG + I DVR++AATNR+++KMVAD FR DL++RL Sbjct: 230 GDMPLETQAKILRVLEEKEVDRLGGVRPIPVDVRVVAATNRNIQKMVADGAFREDLFFRL 289 Query: 543 NVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELE 602 NVFPI LPPLRERPEDIP L + F K + + +I + L +WPGNVREL Sbjct: 290 NVFPIQLPPLRERPEDIPFLIEEFM-KFSSKE----STISPPAMHILCAHQWPGNVRELR 344 Query: 603 NVIERAVLLTRGNVLQLSLPDIVLPEPETP-PAATVVALEGED----------EYQLIVR 651 N +E ++L + V LP + P PA +++ E E E ++V Sbjct: 345 NAVESSLLFGKEVVEPEHLPPALAGSMAVPTPAGVLISGEDESLDLDFRLQELEKGILVE 404 Query: 652 VLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSAL 691 LK ++GV A AA+ LG+K +L R+K+ GID S + Sbjct: 405 ALKRSDGVQA---QAARLLGIKERSLWHRVKKYGIDVSQI 441 >UniRef50_C9RXL1 GAF modulated sigma54 specific transcriptional regulator, Fis family n=6 Tax=Geobacillus RepID=C9RXL1_GEOSY Length = 643 Score = 492 bits (1266), Expect = e-137, Method: Composition-based stats. Identities = 142/354 (40%), Positives = 210/354 (59%), Gaps = 12/354 (3%) Query: 342 IAVDNALAYQEIHRLKERLVDENLALTEQL------NNVDSEFGEIIGRSEAMYSVLKQV 395 + VD Y++ R+ ++ + + Q N F ++IG+ + + Sbjct: 291 VLVDKIPIYEKKERIGSMIIVKEIEKVRQFVNHLSGNQAKITFADMIGQHPCFIEKMNEA 350 Query: 396 EMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHER 455 + A +DS VLILGE+GTGKE++A+AIHN S R N+ + +NC +P LL S+LFG+ Sbjct: 351 RLAAATDSNVLILGESGTGKEMVAQAIHNESKRRNKPFIAINCGGIPRDLLGSELFGYVD 410 Query: 456 GAFTGASAQ-RIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTD 514 GAFTGA G+FELA+ +LFLDE+G+M LE+Q LLRV+QE+E R+G +K+I D Sbjct: 411 GAFTGAKKGGSAGKFELANGGTLFLDEIGEMSLEMQVLLLRVIQEKEVMRIGGHKVIPVD 470 Query: 515 VRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRL 574 VR+IAATN+DL++ V FR DL++RLNV PI LPPLRER EDIPLL + F ++A + Sbjct: 471 VRIIAATNKDLRREVQKGSFREDLFFRLNVMPIVLPPLRERKEDIPLLVRHFIERLAHKR 530 Query: 575 GRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQ-LSLPDIVLPEPETPP 633 + I ++ L L +WPGN+REL+N+IER + VL LP+ + + Sbjct: 531 DKPFPEIRSDFLEALMQYDWPGNIRELQNMIERVLNQCTKPVLTAADLPEEIFQPSCSSQ 590 Query: 634 AATVVAL-EGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 V + E + Q I+ LK+ NG ++ AA+ LG+ R+T +M + I Sbjct: 591 VRENVDISRNEIKKQSIIEALKQCNGNIS---KAARYLGISRSTFYRQMDKWNI 641 >UniRef50_C7PQF7 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Bacteroidetes RepID=C7PQF7_CHIPD Length = 461 Score = 491 bits (1265), Expect = e-137, Method: Composition-based stats. Identities = 157/354 (44%), Positives = 225/354 (63%), Gaps = 8/354 (2%) Query: 339 RVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMV 398 + + + L + + N E+ IIG S+ + ++ + +V Sbjct: 111 LITLEIARYLHANSLEAVMR-----NRDTKEREIQPMLRRYGIIGESQRLQQTMQHLSVV 165 Query: 399 AQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAF 458 A SD++VLI GE+GTGKE IA IH LSGR ++ ++K+NCAAMPA L+ES LFGHE+GAF Sbjct: 166 APSDTSVLITGESGTGKEKIADLIHRLSGRASKPLIKVNCAAMPAELIESLLFGHEKGAF 225 Query: 459 TGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLI 518 +GA + IG+FE A S+FLDE+G+MP+++Q KLLRVLQE+E ER+G+ + DVR+I Sbjct: 226 SGALERHIGKFEQASGGSIFLDEIGEMPVDMQVKLLRVLQEKEIERIGAMHSQKVDVRII 285 Query: 519 AATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNI 578 +AT+R+L+K VAD FR D YYRLNVFP+HLPPLRER EDIP L F R +GR + Sbjct: 286 SATSRNLEKEVADGRFRMDFYYRLNVFPLHLPPLRERREDIPALVDYFLEMHCRNIGRPL 345 Query: 579 DSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVL-QLSLPDIVLPEPETPPAATV 637 ++ + +L WPGN+RELE++IER+VLL G V+ Q++LP+ + P Sbjct: 346 VTVTRRVMDSLILYSWPGNIRELEHLIERSVLLCEGPVITQITLPEKIEYVPVAQEER-- 403 Query: 638 VALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSAL 691 V E+E + I+ VL+ G + G GAA+ L + +TL R+++LGI+K L Sbjct: 404 VKTMQENEREHIIDVLRRCRGKIFGKGGAAELLSMNVSTLNYRIRKLGINKDEL 457 >UniRef50_B8FWA2 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8FWA2_DESHD Length = 597 Score = 491 bits (1264), Expect = e-137, Method: Composition-based stats. Identities = 158/528 (29%), Positives = 240/528 (45%), Gaps = 59/528 (11%) Query: 173 NNVDYELLCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDI--DDISIVLRSH 230 + L + L + + ++E V I + + I L + Sbjct: 115 AKMVTTLFRHSEQDLTDLEHTAKELETVKALNETFDTVLNIIRDGIVVVDEKGKITLVNQ 174 Query: 231 RKNKLNIYSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLF 290 + + A S + ++ E+L I Sbjct: 175 AMADFLTLPPEEMIGKPIAEIMSSNQLHHVACTGLSQTSEVLTIR--------------- 219 Query: 291 DTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAY 350 + + P++ G ++G + + + +A A Sbjct: 220 ----GKPLIVSNSPIIKGGKVVGAVG-----------------KAVFPHLAEA------- 251 Query: 351 QEIHRLKERLVDENLALTEQLNNVDSEFG---EIIGRSEAMYSVLKQVEMVAQSDSTVLI 407 QE+ L + E+L + +++ S M + ++ +VA S STVLI Sbjct: 252 QELAEKVRCLEHKVTFFQEELQKNRTAQDIMKDMVAESPQMKKLKDEISIVATSTSTVLI 311 Query: 408 LGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQ-RI 466 GE+GTGKE +A AIH S R +K+NCA++P L+ES++FG+ GAFTGA+ + Sbjct: 312 TGESGTGKEGVAHAIHLGSDRGKGPFIKVNCASIPESLMESEMFGYVGGAFTGAAKNGKP 371 Query: 467 GRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLK 526 GR E AD +LFLDE+G+MPL LQ KLLRVLQ++E ERLGS + I+ ++R++AATN+ L Sbjct: 372 GRIERADGGTLFLDEIGEMPLALQAKLLRVLQDREIERLGSTETIKVNIRILAATNKKLS 431 Query: 527 KMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETL 586 +A EFR DLYYRLNV +HLPPLRER EDI L F K L N+ I + Sbjct: 432 NAIAKGEFRQDLYYRLNVINLHLPPLRERLEDIEPLTHFFISKFNDILKANVSGITPNAM 491 Query: 587 RTLSNMEWPGNVRELENVIERAVLLTRGNVLQL-SLPDIVLPEPETPPAATVVAL----- 640 TL WPGN+RELENV+ERAV TR +++L LP ++ Sbjct: 492 ATLLQYSWPGNIRELENVVERAVNYTRSGLIELIHLPHQIISGNTALGQVMNKKTIRHQD 551 Query: 641 -EGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 G+ E +I L++ G AA+ L L R+ L ++ + ++ Sbjct: 552 RLGQIERDMIAAALEKAGG---NKTKAAKLLNLSRSRLYDKLNKYDLN 596 >UniRef50_D1R5K3 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R5K3_9CHLA Length = 462 Score = 491 bits (1264), Expect = e-137, Method: Composition-based stats. Identities = 164/437 (37%), Positives = 242/437 (55%), Gaps = 26/437 (5%) Query: 274 INLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLL 333 I + + ++ DT + + T +P ++G +L K V T + Sbjct: 26 IEVVTAESGKKALSLIKDTPFDMVITDMKMPDLTGIDILRKCKEISPNTIVVVITAFGSI 85 Query: 334 RQIAERVAIAVDNAL----------AYQEIHRLKERLVDENLALTEQLNNVDSEFG-EII 382 E + + N L A E + LV EN L +Q++ DS +II Sbjct: 86 ENAVEAMKLGAFNYLIKPFSPDTIEAIIEKAKEHLSLVQENQYLRQQVSTGDSRNHFQII 145 Query: 383 GRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMP 442 G S M +L+ V VAQS+++V I GE+GTGKE+IA+AIH S R+ +K+NCAA+P Sbjct: 146 GESPIMKQILRDVTRVAQSNASVFINGESGTGKEVIAQAIHANSARSQFPFIKVNCAAIP 205 Query: 443 AGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEF 502 L+ES+ FGHE+GAFTGA+ +R+GRFELA K +L LDE+ ++PL +Q KLLR +QEQEF Sbjct: 206 ETLIESEFFGHEKGAFTGANFKRLGRFELAHKGTLLLDEITEIPLAVQAKLLRAIQEQEF 265 Query: 503 ERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLL 562 ER+G +K I+ DVRLI+ +NRD+K +A + R DLYYRLNV PI+LPPLR+RPEDI L Sbjct: 266 ERVGGSKPIKVDVRLISTSNRDMKDAIAHKILREDLYYRLNVVPIYLPPLRDRPEDILPL 325 Query: 563 AKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLS-- 620 A F K+ + + E+++ L WPGNVREL N++ERAV++T + + Sbjct: 326 AHYFLEKMCMENHKQAKTFSKESIKKLVGYAWPGNVRELANIVERAVVMTTNSEITPEHL 385 Query: 621 -----LPDIVLPEPETPPAATVVALE-----GEDEYQLIVRVLKETNGVVAGPKGAAQRL 670 P++ L T T+ +L E E +LI+ L+ + A+ L Sbjct: 386 YIENNHPNLPLRTASTLSQNTLTSLPVGMTLQELEKRLIIETLQAQHN---NRTKTAEVL 442 Query: 671 GLKRTTLLSRMKRLGID 687 G+ TL +++ + Sbjct: 443 GISVRTLRNKLNEYNMK 459 >UniRef50_D1CFK1 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Bacteria RepID=D1CFK1_THET1 Length = 466 Score = 491 bits (1264), Expect = e-137, Method: Composition-based stats. Identities = 155/399 (38%), Positives = 214/399 (53%), Gaps = 20/399 (5%) Query: 301 CLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIA----VDNALAYQEIHRL 356 +P + G +L L+ + T + + + + +I R Sbjct: 57 VRMPKIDGIEVLKQLRARGMNVPMIVMTAFGNSSTTIKAMQLGAWDYITKPFDLDDITRT 116 Query: 357 KERLVDE-----NLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGET 411 R ++ + + + IIG S M V K + +VA SD+TVLI GET Sbjct: 117 INRFFEQQKLSTKVRGRAEEAVAPDKTSRIIGNSPVMQEVYKTIGLVAASDATVLITGET 176 Query: 412 GTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFEL 471 GTGKEL+A IH S + +VK+NCAA+P LLES+LFGHE+G+FTGA QR GRFEL Sbjct: 177 GTGKELVAETIHYNSTFSQGPLVKVNCAALPETLLESELFGHEKGSFTGADRQRKGRFEL 236 Query: 472 ADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVAD 531 A K ++FLDE+G+M L Q KLLRVLQE+EFER+G + I+ D R+IAATN+ L++ VA Sbjct: 237 AHKGTIFLDEIGEMTLGTQRKLLRVLQEREFERVGGSSTIKVDTRVIAATNKKLEEEVAA 296 Query: 532 REFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSN 591 +FR DL+YRLNV IHLPPLRER EDIPLL F K SI E ++ L Sbjct: 297 GKFREDLFYRLNVIHIHLPPLRERKEDIPLLVDYFLQKHRYHKDGPPASISEEAIKVLME 356 Query: 592 MEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPET--------PPAATVVALEGE 643 +WPGNVRELEN IERAV+L +G V+ ++ Sbjct: 357 HDWPGNVRELENTIERAVILAQGGVITTHHLVFSQIRTGRNIDLSEVIDKTRSLDEAMRI 416 Query: 644 DEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMK 682 E ++I+ L++ G A AA+ L + + L +++ Sbjct: 417 IESKIILEALEKAKGDHA---LAAEILDISESELKRKLR 452 >UniRef50_Q2LRW3 Response regulator containing sigma 54 interaction domain n=3 Tax=Bacteria RepID=Q2LRW3_SYNAS Length = 457 Score = 490 bits (1262), Expect = e-137, Method: Composition-based stats. Identities = 155/421 (36%), Positives = 251/421 (59%), Gaps = 27/421 (6%) Query: 287 RMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIA--- 343 R+L + + LP + G +L +K + V + + + + Sbjct: 40 RLLDEDLPGIVLLDIWLPGIDGMEVLKTIKSLHPKLPVVMMSGHGTIETAVKATKLGAFD 99 Query: 344 -VDNALAYQEIHRLKE------RLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVE 396 ++ L+ ++I + RL +EN+ L +++N E+ G+S + +++ + Sbjct: 100 FIEKPLSLEKIILTLKHALDLSRLEEENVLLKQKINRDY----ELTGKSPPIIELMEMIS 155 Query: 397 MVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERG 456 +VA +++ +LI+GE GTGKEL+ARAIH S R ++ MV++NCAA+P L+ES+LFGHE+G Sbjct: 156 IVAPTNAWILIMGENGTGKELVARAIHRQSKRADKPMVEVNCAAIPEELIESELFGHEKG 215 Query: 457 AFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVR 516 AFTGA+ ++ G+F++A + ++FLDEV DM L+ Q K+LR+LQE++FER+G NK+IQ DVR Sbjct: 216 AFTGATEKKRGKFDIAHEGTIFLDEVADMSLKAQAKILRILQEKKFERVGGNKVIQLDVR 275 Query: 517 LIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGR 576 ++AATN+DL+K + + FR DL+YRLNV P+ +PPLR R EDIPLLA+ F A + G Sbjct: 276 VLAATNKDLEKEMEEGRFRQDLFYRLNVIPLKVPPLRSRKEDIPLLAERFLSDFALKEGE 335 Query: 577 NIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLS-LPDIVLPEPETPP-- 633 +I + L L WPGNVREL+N IER ++T NV+ + +P + + P Sbjct: 336 PGKTIQDDALALLMEHSWPGNVRELKNFIERLAIMTTSNVITVHDIPPLPRDGHKVEPFR 395 Query: 634 -------AATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 A + + + E Q I R L+E +G ++ A+ +GL+R+ L ++K G+ Sbjct: 396 EPGFELLAGSFREAKMDFEKQYISRKLREFDGNIS---KTAESIGLERSNLHKKIKAYGL 452 Query: 687 D 687 + Sbjct: 453 E 453 >UniRef50_A9AYA4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AYA4_HERA2 Length = 457 Score = 490 bits (1262), Expect = e-137, Method: Composition-based stats. Identities = 179/457 (39%), Positives = 235/457 (51%), Gaps = 32/457 (7%) Query: 244 DKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLL 303 D DE G LTE E+L + PY+ ++ D + Sbjct: 16 DPGIRGLLCEVFDEEGYLTEPAEHGGEVLAKMTKKH----PYDLLIMD---------VRM 62 Query: 304 PLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIA----VDNALAYQEIHRLKER 359 P G T+L L+ V T + I V +E+ + +R Sbjct: 63 PGQDGLTILEQLRKNGITTPVIMMTAHGTSSTAIRAIQIGAYDYVIKPFDVEEVTLVVKR 122 Query: 360 LVDENL---ALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKE 416 L D + E ++IG S AM + KQ+ VA +D+TVLI GETGTGKE Sbjct: 123 LFDHQQLASKVRELEAKSFDPRDKMIGNSPAMQEIYKQIGRVAHTDATVLITGETGTGKE 182 Query: 417 LIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSS 476 ++A IH S R N MVK+NCAA+P LLES+LFGHE+GAFTGA AQR GRFELA K S Sbjct: 183 VLANLIHVNSARRNGPMVKVNCAALPESLLESELFGHEKGAFTGAVAQRKGRFELAHKGS 242 Query: 477 LFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRS 536 +FLDE+G+M L Q KLLR+LQE+EFER+G ++ DVR+IAATNRDL+ V FR Sbjct: 243 IFLDEIGEMTLATQKKLLRILQEREFERVGGTTTVRVDVRVIAATNRDLEADVRAGTFRE 302 Query: 537 DLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPG 596 DLYYRLNV +HLP LR+R DIPLLA+ F K I E + L+N +WPG Sbjct: 303 DLYYRLNVITLHLPALRQRIGDIPLLAEFFLDKYRYAPSSPPARISEEAMERLNNYDWPG 362 Query: 597 NVRELENVIERAVLLTRGNVLQLSLPDIVLPEPET---------PPAATVVALEGEDEYQ 647 NVR+LE+ IERAV+L+RGNV+ +V +T+ L + E Sbjct: 363 NVRQLEHEIERAVILSRGNVITSEHMSLVPSSRSALQVDIAARLREKSTLEELLADVERL 422 Query: 648 LIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRL 684 + L + + K AA+ LGL R K+ Sbjct: 423 ALQEALVQHD---DDLKVAARSLGLSEAEFQKRQKKY 456 >UniRef50_Q01W56 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01W56_SOLUE Length = 552 Score = 490 bits (1262), Expect = e-137, Method: Composition-based stats. Identities = 169/459 (36%), Positives = 241/459 (52%), Gaps = 24/459 (5%) Query: 235 LNIYSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWG 294 L ++ + E AG ++ + + +++ P Sbjct: 115 LFLFRALASARDERQRLAFEEQLAGLISSMLPCTGAAIVLRPGAEPPPLP---------E 165 Query: 295 NQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIH 354 +L ++PL + G L F + L + E + A A E Sbjct: 166 VDPASLAIVPLWAHGKPAGTLAAW------FPPEQIVNLSRHQETLGAIATLAAAALETE 219 Query: 355 RLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTG 414 R E+L ++N L E+L + I G S A++ +L V VA +++VLILGE+G G Sbjct: 220 RDVEQLREQNQLLRERLAVSE---PGIAGESIAIHKLLGLVARVAPQEASVLILGESGVG 276 Query: 415 KELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADK 474 KEL+A A+H LS R R V +NCAA+ LLES+LFGHE+GAFTGA AQ+ G+ E+A+ Sbjct: 277 KELVAHALHRLSPRAARPFVAINCAALTETLLESELFGHEKGAFTGAVAQKKGKLEMAEG 336 Query: 475 SSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREF 534 ++FLDE+G++ LQ KLLRVLQ++EFER+G + DVRL+AATNRDL V F Sbjct: 337 GTVFLDEIGELAAPLQAKLLRVLQQREFERVGGTHTWKLDVRLVAATNRDLAAEVQRGAF 396 Query: 535 RSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEW 594 R DLY+RLNV + +PPLRERP DI LA+ F + R GR I I ET L W Sbjct: 397 REDLYHRLNVVALRVPPLRERPGDILPLARYFLDRAIPRCGRMIKGIAPETEECLLAYSW 456 Query: 595 PGNVRELENVIERAVLLTRGNVLQL-SLPDIVLPEPETP-PAATVVALEGEDEYQLIVRV 652 PGNVRELEN IERAV+L + +Q LP+ VL P P + + + QLI+ Sbjct: 457 PGNVRELENAIERAVVLGDTDWIQPEDLPETVLEHGAAPQPPGALSNSVADTKRQLILAA 516 Query: 653 LKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSAL 691 +++ G AA+RL + +L ++ L + + AL Sbjct: 517 WRQSGG---DHDRAAERLNIHPNSLRRLIRTLKL-RDAL 551 >UniRef50_P54931 Nif-specific regulatory protein n=9 Tax=Alphaproteobacteria RepID=NIFA_RHIEC Length = 584 Score = 490 bits (1261), Expect = e-137, Method: Composition-based stats. Identities = 161/555 (29%), Positives = 267/555 (48%), Gaps = 64/555 (11%) Query: 190 LVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQHPA 249 + I+ + + ++ ++ V + + I +IV+ + I +T + + Sbjct: 33 IYEISKVLTAPARLEITLANVVNVLSSFLQIRCGAIVVLDAE-GQPEIAATGDIPPSSQS 91 Query: 250 HEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGD 309 + + +A + + + + L++ + +L E + G + +P+ + + Sbjct: 92 AARGVIPKA--VIDHIATTGMPLIVKDVSKSELFQAEPQPPWSSGTVPISFIGVPVKADN 149 Query: 310 TMLGVLKLAQCEEKV---FTTTNLNLLRQIAERVAIAV--DNALAYQEIHRLKERLVDEN 364 +LG + + + ++ L +A V+ + L + + E+ E Sbjct: 150 KILGTISIDRVRNDAAPFPADEDVRFLTMVANLVSRTIRLHRFLNLEGRRPIGEQERPEK 209 Query: 365 LALTEQLNNVDSEF---GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARA 421 + ++ IIG S A+ V++ V +VA+++STVL+ GE+GTGKE A+A Sbjct: 210 PIIAQRGAPGRHPPVKIDGIIGDSPALQQVVETVSVVARTNSTVLLRGESGTGKEFFAQA 269 Query: 422 IHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDE 481 IH LS R N+ VK+NCAA+P G+LES+LFGHE+GAFTGA AQR GRFELA+ +L LDE Sbjct: 270 IHELSPRKNKPFVKLNCAALPEGVLESELFGHEKGAFTGAIAQRAGRFELANGGTLLLDE 329 Query: 482 VGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYR 541 +G++ Q KLLRVLQE E ER+G K + DVRLI ATN++L+ VA+ EFR+DLYYR Sbjct: 330 IGEISPAFQAKLLRVLQEGELERVGGTKTLAVDVRLICATNKNLEMAVANAEFRADLYYR 389 Query: 542 LNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVREL 601 ++V PI LPPLRERP DIP LA A + + R + + + + +S +PGNVREL Sbjct: 390 ISVVPIVLPPLRERPGDIPRLANALLDRFNKENQREL-TFSSSAIEVMSQCYFPGNVREL 448 Query: 602 ENVIERAVLLTRGNVLQLSL---------------------------------------- 621 EN + R L R + + S Sbjct: 449 ENCVRRTATLARSSSIVSSDFACKNSQCLSSLLWKTDGSPGGITVDGHARSNVMPTSSPR 508 Query: 622 --------PDIVLPEPETPPAATVVALEGE-DEYQLIVRVLKETNGVVAGPKGAAQRLGL 672 ++ + P + A+E + ++ +++ V A AA+ LGL Sbjct: 509 SGGSIGASDEVSSVKACDPHGSGCPAMESRLTQRDRLIEAMEKAGWVQA---KAARILGL 565 Query: 673 KRTTLLSRMKRLGID 687 + +++ I+ Sbjct: 566 TPRQVGYALRQHRIE 580 >UniRef50_B2V8F5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Sulfurihydrogenibium RepID=B2V8F5_SULSY Length = 440 Score = 489 bits (1260), Expect = e-136, Method: Composition-based stats. Identities = 147/324 (45%), Positives = 222/324 (68%), Gaps = 8/324 (2%) Query: 368 TEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSG 427 ++ +V+ EF IIG+S+ M + K++++V++S+S++LI GE+GTGKEL+A+AIH S Sbjct: 119 KQENFDVEEEFEGIIGKSQKMKDLFKEIDVVSKSESSILIEGESGTGKELVAKAIHRRSK 178 Query: 428 RNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPL 487 R N+ + +NC+A+P L E++LFGHE+G+FTGAS + IG+ ELA + +LFLDE+G+MPL Sbjct: 179 RANQPFIPINCSAIPNELFENELFGHEKGSFTGASNREIGKIELAGEGTLFLDEIGEMPL 238 Query: 488 ELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPI 547 +Q KLLRVLQE+EF R+G ++I+ R+I+ATNR+L++MV ++EFR DL+YR+NV + Sbjct: 239 FMQAKLLRVLQEREFFRVGGKELIKMRCRVISATNRNLEEMVENKEFREDLFYRINVIHL 298 Query: 548 HLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIER 607 +PPLRER EDIPLL K F K ++ +N+ I + L L N +WPGNVR+LEN+IER Sbjct: 299 KIPPLRERKEDIPLLVKKFIDKFSKINNKNVYDIDNDALEILMNYDWPGNVRQLENIIER 358 Query: 608 AVLLTRGNVLQL-SLPDIVLPEPETPPAATVVALEG----EDEYQLIVRVLKETNGVVAG 662 AV+L +G ++ LPD + + + E +I++VL+E N Sbjct: 359 AVVLCQGEIITANHLPDRIKSNSQKISENIRSENNSLNLYDIEKNIILKVLQEEN---FN 415 Query: 663 PKGAAQRLGLKRTTLLSRMKRLGI 686 AAQ+LG+ R L ++MK G+ Sbjct: 416 QTRAAQKLGISRKQLRTKMKNFGL 439 >UniRef50_Q1PYM7 Similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYM7_9BACT Length = 469 Score = 489 bits (1260), Expect = e-136, Method: Composition-based stats. Identities = 165/413 (39%), Positives = 236/413 (57%), Gaps = 32/413 (7%) Query: 303 LPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIA----------VDNALAYQE 352 LP ++G ++ +K + T + E + + +D + E Sbjct: 58 LPNINGVELIEKIKEKDPNALMVVMTGYGSVDSAVEVMRLGAYDYLEKPFKLDRLRSVVE 117 Query: 353 IHRLKERLVDENLALTEQLNNVDSEFGEII-GRSEAMYSVLKQVEMVAQSDST-VLILGE 410 ++ L E L + E+ D E II G S M + ++ VA+S ST VLI GE Sbjct: 118 KALRRQGLRQEVLEIKEKQWTFDEESDGIIIGNSPQMKEIYSLIKQVAKSSSTTVLIQGE 177 Query: 411 TGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGA-SAQRIGRF 469 +GTGKEL+ARA+H LS R + R V +NCAA+ LLE++LFG+E+GAFTGA +A + G F Sbjct: 178 SGTGKELVARAVHRLSARKSGRFVDINCAALTESLLEAELFGYEKGAFTGAATAGKPGLF 237 Query: 470 ELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMV 529 E+ADK ++FLDE+G+M + LQ KLLR+LQE++F+R+G + I+ DVR+IA+TNR+L++ + Sbjct: 238 EIADKGTVFLDEIGEMGVLLQAKLLRILQERQFKRVGGIQDIKIDVRIIASTNRNLEEEI 297 Query: 530 ADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTL 589 A FR DLYYRL V PI++PPLRER EDI LL K F K G+NI IP +T R L Sbjct: 298 ASGNFRKDLYYRLKVLPIYVPPLRERREDIMLLVKYFIHKYNNEFGKNICDIPPDTERIL 357 Query: 590 SNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGE------ 643 WPGN+REL+NV+ER VL+ G+ L + + + + ++G Sbjct: 358 LEYGWPGNIRELKNVVERGVLIANGSALSPKYVANISVGKKESESLAGITVDGNTDCVSS 417 Query: 644 ----------DEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 E Q I VLKET+ AA+ LG+ RTTL +++K GI Sbjct: 418 DGLDARSLAFMEKQHIENVLKETSWR---RTEAARVLGINRTTLYNKIKEYGI 467 >UniRef50_A1ATK4 Two component, sigma54 specific, transcriptional regulator, Fis family n=12 Tax=Deltaproteobacteria RepID=A1ATK4_PELPD Length = 480 Score = 489 bits (1260), Expect = e-136, Method: Composition-based stats. Identities = 169/492 (34%), Positives = 252/492 (51%), Gaps = 51/492 (10%) Query: 226 VLRSHRKNKLNIYSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPY 285 +L + + + + L + D+ + ++ L I + ++ Sbjct: 6 ILVADDEESMRWVLSKAL--KRKGFTVDLADDGRQALALIQENSYDLAILDIKMPGMSGL 63 Query: 286 ERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFT--TTNLNLLRQIAERVAIA 343 + L D L ++ + + +M ++ + + +L+++ I E+V A Sbjct: 64 D--LLDRIREMKSDLLVVIMTAEASMKNAVEAMKRGAYDYITKPFDLDVIDAIVEKVGRA 121 Query: 344 VDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDS 403 + + L ++L IIG S AM S+ K + VA SD Sbjct: 122 --------------REIAGQVSLLKQELKEHYQVEKNIIGNSAAMQSIYKTIGKVADSDI 167 Query: 404 TVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASA 463 T+LI GE+GTGKE++ARAIH SGR + V +NCAA+P LLES+LFG ERGAFTGAS Sbjct: 168 TILIQGESGTGKEMVARAIHFNSGRLGKPFVAINCAAIPRDLLESELFGSERGAFTGASE 227 Query: 464 QRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNR 523 ++ G+FE A++ ++FLDE+GDMPL+LQ K+LRVLQE E R+G + I +VR++AATN+ Sbjct: 228 RKQGKFEQANQGTIFLDEIGDMPLDLQAKILRVLQEHEVTRVGGTQSIAVNVRIVAATNQ 287 Query: 524 DLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPA 583 +L++ V REFR DLYYRLNV PI L PLRER +DIP L + F + L + Sbjct: 288 ELQERVRQREFREDLYYRLNVVPITLAPLRERRDDIPELVRYFLDRTCTELSIPPKQLTP 347 Query: 584 ETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPE----TPPAATVVA 639 E + LS WPGNVRELEN I+RAV+L+ +L + D + PE E TP A++ A Sbjct: 348 EAMALLSRHSWPGNVRELENTIKRAVILSNDPMLTEADFDGLQPEGEETAMTPQDASLEA 407 Query: 640 LEG------------------------EDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRT 675 + + E LI +L++T AA LG+ R Sbjct: 408 IVEAKLRSCLTGIEKLDKSDIHAKVLQQVERPLIRFILEKTRW---NQVKAADILGINRN 464 Query: 676 TLLSRMKRLGID 687 TL ++ L I+ Sbjct: 465 TLRKKIHDLEIE 476 >UniRef50_B8IZ33 Two component, sigma54 specific, transcriptional regulator, Fis family n=15 Tax=Desulfovibrionales RepID=B8IZ33_DESDA Length = 459 Score = 489 bits (1259), Expect = e-136, Method: Composition-based stats. Identities = 164/436 (37%), Positives = 226/436 (51%), Gaps = 23/436 (5%) Query: 270 EMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTN 329 E + + A L ++ + + T +P ++G +L +K + V T Sbjct: 27 EGYTVTAISDPETAL--AFLDESEVDVVVTDMKMPKVTGRQVLERVKKSWPYIPVLIMTA 84 Query: 330 LNLLRQIAERVAIAV--------DNALAYQEIHRLKERLVDENLA-LTEQLNNVDSEFGE 380 + E + N IH E L +++ + Sbjct: 85 FGSIESAVELMKYGAFDYITKPFSNDELLLSIHNAVELARAHRQYRLLQEVMEDRYGVHK 144 Query: 381 IIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAA 440 I+GRS A+ VL VE A S STVLI GE+GTGKELIARAIH S R + V +NC A Sbjct: 145 IVGRSRAIRDVLIMVERAAPSRSTVLITGESGTGKELIARAIHYTSPRKDNPFVSVNCMA 204 Query: 441 MPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQ 500 + G+LES+LFGHE+G+FTGA A R GRFE AD +LFLDE+ ++ +LQ KLLRVLQE+ Sbjct: 205 LNPGVLESELFGHEKGSFTGAVAMRRGRFEQADGGTLFLDEIAELTPDLQVKLLRVLQER 264 Query: 501 EFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIP 560 FER+G + I+ D+R++AATN+DL MV FR DLYYRLNV I LPPLRER EDIP Sbjct: 265 RFERVGGGEEIEVDIRVVAATNKDLAAMVEKGTFRDDLYYRLNVVQIPLPPLRERREDIP 324 Query: 561 LLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLS 620 LL F K+ + E L L+ EWPGN+R+LENV+E ++L G V+ + Sbjct: 325 LLVAHFVDKVCTDNTMPAKTFSTEALNYLTGYEWPGNIRQLENVVESCLVLVPGTVINVD 384 Query: 621 -LPDIVLPEPET--------PPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLG 671 LP + E P + + E LI R L + V AA+ LG Sbjct: 385 NLPAEIRDEESQFKSAVDLLPVQLDLADTLEKIEAALIRRALVRADLV---QVKAAEYLG 441 Query: 672 LKRTTLLSRMKRLGID 687 + ++ L ++K+ I Sbjct: 442 ISKSLLQYKLKKYAIT 457 >UniRef50_B1ZR63 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZR63_OPITP Length = 490 Score = 489 bits (1259), Expect = e-136, Method: Composition-based stats. Identities = 155/379 (40%), Positives = 215/379 (56%), Gaps = 45/379 (11%) Query: 338 ERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEM 397 ++ + + A Y+++ R+ L D+ + E G ++GRS AM + + +E Sbjct: 109 SQIDVILKKAQTYRQLLRVNRLLSDD----------PEDEEGILVGRSPAMIRLRQIIER 158 Query: 398 VAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGA 457 VA +D+TVLI GE+GTGKE++AR + S R ++ +K+NCAA+ L+ES+ FGHERGA Sbjct: 159 VAPTDATVLITGESGTGKEMVAREFYRRSPRRSQAFIKVNCAAISENLIESEFFGHERGA 218 Query: 458 FTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRL 517 FTGA+ +R GRFELA + +L LDEV ++P LQ KLLRVLQE+EFER+G ++ I+ +VR+ Sbjct: 219 FTGATERREGRFELAHQGTLLLDEVSEIPANLQAKLLRVLQEREFERVGGSRTIKVNVRI 278 Query: 518 IAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRN 577 IA +NRDL + V EFR DLYYRLNVFP+H+P LRERPEDI LLA F + AR+ G Sbjct: 279 IATSNRDLMRHVEKGEFRQDLYYRLNVFPVHVPALRERPEDIALLADHFLRRFARKHGVK 338 Query: 578 IDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTR-------------GNVLQLSLPDI 624 + L WPGNVREL+N +ERAV+L+ G+ L LP Sbjct: 339 VTGFADSARAALIGYRWPGNVRELQNTVERAVILSETGRAVTAAALGLPGDFLPGELPLE 398 Query: 625 VLPEPETPPAATVVALEG-------------------EDEYQLIVRVLKETNGVVAGPKG 665 P PE P E E E Q I L++T G Sbjct: 399 PAPAPEVPALPVAAVAEEPAGASPTVTDSHGQVLKLDELEKQAIRAALRQTGG---NRTQ 455 Query: 666 AAQRLGLKRTTLLSRMKRL 684 AA LG+ TL ++++ Sbjct: 456 AAAELGISIRTLRNKLQEY 474 >UniRef50_Q39SU6 Two component, sigma54 specific, transcriptional regulator, Fis family n=10 Tax=Bacteria RepID=Q39SU6_GEOMG Length = 461 Score = 489 bits (1259), Expect = e-136, Method: Composition-based stats. Identities = 159/417 (38%), Positives = 228/417 (54%), Gaps = 23/417 (5%) Query: 287 RMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDN 346 R+ D + T +P M G +L +K + V T + E + + Sbjct: 46 RLFEDGAPTLVVTDLKMPGMGGFQLLREVKERFPDTVVIVITAFGAVEAAVEAMKAGAYD 105 Query: 347 ALA---YQEIHRLKERLVDENLALTEQ------LNNVDSEFGEIIGRSEAMYSVLKQVEM 397 + +E +L R + L+ + + EF IIG S M V + ++ Sbjct: 106 FITKPFNREALKLTVRKALDMQGLSRENRRLREELSEREEFRSIIGISPPMEEVFRVIDR 165 Query: 398 VAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGA 457 VA +D+TVLI GE+GTGKEL+ARAIHN S R V +NCAA+P LLES+LFGH +GA Sbjct: 166 VADTDATVLITGESGTGKELVARAIHNRSSRRAAPFVAINCAAIPRDLLESELFGHVKGA 225 Query: 458 FTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRL 517 FTGA + G+F A+ +LFLDEVG++P+ELQ KLLR LQE+E + +G I+ DVR+ Sbjct: 226 FTGAVQDKEGKFRQAEAGTLFLDEVGELPVELQSKLLRALQEKEVQPVGGAHTIKLDVRV 285 Query: 518 IAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRN 577 +AATN DL++ +A+ FR DL+YRL+V P+HLPPLRER EDIPLL + F A + G Sbjct: 286 VAATNADLEEAIAEGRFREDLFYRLSVIPVHLPPLRERKEDIPLLVRHF----AAKHGGA 341 Query: 578 IDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQL-SLPDIVLPEPETPPAAT 636 + E L ++ WPGNVRELEN +ER +++ + + LP+ V Sbjct: 342 SVTFSPEILAVMAAYGWPGNVRELENTVERILIMRNADTIHPDDLPEKVRRGRSPQRECR 401 Query: 637 VVALEGE------DEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 V+ L E E +++V L+ N AA+ L + R TL+ RM++ I Sbjct: 402 VINLPDEGYSLEQLEREIVVEALERNNW---NQSSAARFLRIPRHTLIYRMEKYSIT 455 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P19323 Formate hydrogenlyase transcriptional activator ... 863 0.0 UniRef50_P40734 Formate hydrogenlyase transcriptional activator ... 839 0.0 UniRef50_Q2RXL4 Transcriptional regulator, NifA subfamily, Fis f... 748 0.0 UniRef50_Q026M7 Transcriptional regulator, NifA subfamily, Fis F... 725 0.0 UniRef50_A0KL56 Formate hydrogenlyase transcriptional activator ... 700 0.0 UniRef50_Q1ZUC7 Formate hydrogenlyase transcriptional activator ... 681 0.0 UniRef50_D0Z425 Formate hydrogenlyase transcriptional activator ... 674 0.0 UniRef50_P71229 Hydrogenase-4 transcriptional activator n=45 Tax... 660 0.0 UniRef50_B4DAQ1 Transcriptional regulator, NifA subfamily, Fis F... 644 0.0 UniRef50_A6EHB3 Sigma-54-dependent transcriptional regulator n=1... 638 0.0 UniRef50_Q1ZGP7 Formate hydrogen-lyase transcriptional activator... 627 e-178 UniRef50_C7PQF6 Transcriptional regulator, NifA subfamily, Fis F... 624 e-177 UniRef50_B0SC18 Transcriptional regulator n=7 Tax=Bacteria RepID... 619 e-176 UniRef50_D2QLL9 Transcriptional regulator, NifA subfamily, Fis F... 618 e-175 UniRef50_P12626 Nitrogen fixation protein anfA n=11 Tax=Bacteria... 613 e-174 UniRef50_C8QWL5 Transcriptional regulator, NifA, Fis Family n=1 ... 612 e-173 UniRef50_B3Q676 Transcriptional regulator, NifA subfamily, Fis F... 610 e-173 UniRef50_P27713 Nif-specific regulatory protein n=3 Tax=Burkhold... 610 e-173 UniRef50_A5G4X7 Transcriptional regulator, NifA subfamily, Fis F... 610 e-173 UniRef50_B3QSR6 Transcriptional regulator, NifA, Fis Family n=2 ... 608 e-172 UniRef50_A8ZZQ7 Sigma-54 factor interaction domain-containing pr... 608 e-172 UniRef50_A6EHC4 Sigma-54-dependent transcriptional regulator n=1... 607 e-172 UniRef50_B6WRE4 Putative uncharacterized protein n=1 Tax=Desulfo... 602 e-171 UniRef50_Q1NW39 Nif-specific regulatory protein n=2 Tax=Deltapro... 600 e-170 UniRef50_Q2LXW8 Nif-specific regulatory protein with sigma 54 in... 599 e-169 UniRef50_Q3AR86 DNA-binding protein Fis / transcriptional regula... 598 e-169 UniRef50_A7HFP7 Transcriptional regulator, NifA subfamily, Fis F... 598 e-169 UniRef50_A4CKT3 Transcriptional regulator, NifA subfamily, Fis F... 598 e-169 UniRef50_A3ER00 Transcriptional regulator, NifA, Fis Family n=3 ... 597 e-169 UniRef50_B5JMU1 Sigma-54 interaction domain family n=1 Tax=Verru... 593 e-168 UniRef50_A0LFR7 Transcriptional regulator, NifA subfamily, Fis F... 593 e-168 UniRef50_B3U4Q6 Nif-specific regulatory protein n=3 Tax=Bacteria... 590 e-167 UniRef50_C6W352 Sigma54 specific transcriptional regulator, Fis ... 589 e-166 UniRef50_B8FJT8 Two component, sigma54 specific, transcriptional... 588 e-166 UniRef50_C7PN78 Sigma54 specific transcriptional regulator, Fis ... 586 e-165 UniRef50_C1F0X6 Sigma-54 dependent transcriptional regulator, Fi... 586 e-165 UniRef50_C0GSN4 Transcriptional regulator, NifA subfamily, Fis F... 585 e-165 UniRef50_B5YH04 Transcriptional regulator n=1 Tax=Thermodesulfov... 583 e-165 UniRef50_B8FLD5 Transcriptional regulator, NifA subfamily, Fis F... 582 e-164 UniRef50_B5EIR5 Transcriptional regulator, NifA subfamily, Fis F... 580 e-164 UniRef50_Q7M8U4 TRANSCRIPTIONAL REGULATOR (NIFA FAMILY) n=1 Tax=... 579 e-163 UniRef50_B8FJD2 Transcriptional regulator, NifA subfamily, Fis F... 577 e-163 UniRef50_B5ER80 Transcriptional regulator, NifA, Fis Family n=2 ... 577 e-163 UniRef50_A0LH02 Transcriptional regulator, NifA subfamily, Fis F... 576 e-163 UniRef50_A4SC79 DNA-binding protein Fis / transcriptional regula... 575 e-162 UniRef50_C1SIC3 Transcriptional regulator containing GAF, AAA-ty... 575 e-162 UniRef50_D0MEW0 Transcriptional regulator, NifA subfamily, Fis F... 575 e-162 UniRef50_B4U9N2 Transcriptional regulator, NifA subfamily, Fis F... 571 e-161 UniRef50_Q39TH4 Transcriptional regulator, NifA subfamily, Fis f... 571 e-161 UniRef50_UPI00016C3921 transcriptional regulator, NifA subfamily... 571 e-161 UniRef50_B8IZX3 Transcriptional regulator, NifA subfamily, Fis F... 569 e-160 UniRef50_C7LX45 Transcriptional regulator, NifA subfamily, Fis F... 568 e-160 UniRef50_A1AL12 Transcriptional regulator, Fis family n=1 Tax=Pe... 567 e-160 UniRef50_C0GSE0 Sigma54 specific transcriptional regulator, Fis ... 565 e-159 UniRef50_B6YRB5 Nif-specific regulatory protein n=1 Tax=Candidat... 564 e-159 UniRef50_A4J443 Two component, sigma54 specific, transcriptional... 564 e-159 UniRef50_C9RBQ4 Two component, sigma54 specific, transcriptional... 564 e-159 UniRef50_C8W392 Two component, sigma54 specific, transcriptional... 562 e-158 UniRef50_A4J616 Two component, sigma54 specific, transcriptional... 559 e-157 UniRef50_A1ALJ3 Sigma-54 factor, interaction domain-containing p... 559 e-157 UniRef50_C9RS71 Transcriptional regulator, NifA subfamily, Fis F... 557 e-157 UniRef50_Q1D6H5 Sigma-54 dependent DNA-binding response regulato... 557 e-157 UniRef50_C8WZC4 Two component, sigma54 specific, transcriptional... 557 e-157 UniRef50_C3X424 Transcriptional regulator containing GAF n=2 Tax... 557 e-157 UniRef50_C7PEX2 Sigma54 specific transcriptional regulator, Fis ... 556 e-157 UniRef50_B3DZA5 Transcriptional regulator NifA, contains GAF, AA... 556 e-156 UniRef50_Q1D5E1 Sigma-54 dependent transcriptional regulator, Fi... 556 e-156 UniRef50_B8FB78 Transcriptional regulator, NifA subfamily, Fis F... 556 e-156 UniRef50_D1TMK5 Transcriptional regulator NifA n=1 Tax=Burkholde... 555 e-156 UniRef50_Q3A356 Two component, sigma54 specific, transcriptional... 554 e-156 UniRef50_UPI00016C5695 DNA-binding protein Fis / transcriptional... 553 e-155 UniRef50_B8FEY3 Two component, sigma54 specific, transcriptional... 552 e-155 UniRef50_P30667 Nif-specific regulatory protein n=6 Tax=Bacteria... 552 e-155 UniRef50_B5YL21 Acetoacetate metabolism regulatory protein AtoC ... 552 e-155 UniRef50_C8X5C3 Sigma54 specific transcriptional regulator, Fis ... 552 e-155 UniRef50_Q311G4 DNA-binding protein Fis / transcriptional regula... 551 e-155 UniRef50_Q1D4K8 Sigma-54 dependent DNA-binding response regulato... 551 e-155 UniRef50_C5S9Z4 Transcriptional regulator, NifA subfamily, Fis F... 550 e-155 UniRef50_D2QGL7 Two component, sigma54 specific, transcriptional... 550 e-155 UniRef50_B5YHF3 Acetoacetate metabolism regulatory protein AtoC ... 550 e-155 UniRef50_C4XRA9 Transcriptional regulatory protein ZraR n=9 Tax=... 549 e-154 UniRef50_C0Q938 Sigma-54 dependent DNA-binding response regulato... 549 e-154 UniRef50_Q2LSK2 Sigma-54 dependent transcriptional regulator n=4... 549 e-154 UniRef50_Q06065 Acetoacetate metabolism regulatory protein atoC ... 549 e-154 UniRef50_A4VJ57 Nitrogen fixation positive regulatory protein n=... 548 e-154 UniRef50_C6VVC1 Sigma54 specific transcriptional regulator, Fis ... 548 e-154 UniRef50_P09133 Nif-specific regulatory protein n=18 Tax=Rhizobi... 547 e-154 UniRef50_C9RIK1 Transcriptional regulator, NifA subfamily, Fis F... 547 e-154 UniRef50_C7LPL8 Sigma54 specific transcriptional regulator with ... 546 e-154 UniRef50_C6VTN7 Sigma 54 interacting domain protein n=1 Tax=Dyad... 546 e-153 UniRef50_Q2IQM1 Two component, sigma54 specific, transcriptional... 546 e-153 UniRef50_Q1PV55 Strongly similar to sigma 54 response regulator ... 546 e-153 UniRef50_C8X5B4 Transcriptional regulator, NifA subfamily, Fis F... 544 e-153 UniRef50_Q4K714 Sigma-54 dependent DNA-binding response regulato... 544 e-153 UniRef50_D0LFQ8 Two component, sigma54 specific, transcriptional... 544 e-153 UniRef50_P03027 Nif-specific regulatory protein n=14 Tax=Proteob... 544 e-153 UniRef50_Q8Z333 Transcriptional regulatory protein zraR n=36 Tax... 543 e-152 UniRef50_Q2LUG8 Response regulator containing CheY-like receiver... 542 e-152 UniRef50_B1Y713 Transcriptional regulator, NifA, Fis Family n=4 ... 542 e-152 UniRef50_C7LTG8 Sigma54 specific transcriptional regulator with ... 542 e-152 UniRef50_Q1PYB5 Similar to sigma 54 response regulatory protein ... 542 e-152 UniRef50_Q73KY8 Sigma-54 dependent transcriptional regulator, pu... 542 e-152 UniRef50_D2TTF4 Two-component system response regulator n=3 Tax=... 541 e-152 UniRef50_C1SGB7 Response regulator with CheY-like receiver, AAA-... 541 e-152 UniRef50_D0KWC0 Transcriptional regulator, NifA subfamily, Fis F... 541 e-152 UniRef50_Q027A1 Two component, sigma54 specific, transcriptional... 540 e-152 UniRef50_C1ZA32 Transcriptional regulator containing GAF, AAA-ty... 540 e-152 UniRef50_A7HBA5 Two component, sigma54 specific, transcriptional... 540 e-152 UniRef50_B3E4S0 Two component, sigma54 specific, transcriptional... 539 e-151 UniRef50_Q1D574 Sigma-54 dependent transcriptional regulator, Fi... 539 e-151 UniRef50_Q21UU9 Two component, sigma54 specific, transcriptional... 539 e-151 UniRef50_Q6ARB9 Probable two-component system response regulator... 538 e-151 UniRef50_Q9APD9 Transcriptional regulatory protein zraR n=89 Tax... 538 e-151 UniRef50_Q1INE5 Two component, sigma54 specific, transcriptional... 537 e-151 UniRef50_C6MX44 Two component, sigma54 specific, transcriptional... 537 e-151 UniRef50_Q1Q1B9 Strong similarity to sigma 54 response regulator... 537 e-151 UniRef50_A9A0V6 Two component, sigma54 specific, transcriptional... 537 e-151 UniRef50_B8F9P9 Sigma 54 interacting domain protein n=1 Tax=Desu... 537 e-151 UniRef50_Q2RHS4 Sigma54 specific transcriptional regulator, Fis ... 537 e-151 UniRef50_D1R5K3 Putative uncharacterized protein n=1 Tax=Parachl... 536 e-151 UniRef50_Q1PZT5 Strongly similar to sigma 54 response regulatory... 536 e-151 UniRef50_Q1PYI3 Strongly similar to sigma 54 response regulatory... 536 e-150 UniRef50_Q2RVQ1 Transcriptional regulator, NifA, Fis family n=3 ... 536 e-150 UniRef50_A6EHC6 Transcriptional regulator, NifA subfamily, Fis F... 536 e-150 UniRef50_Q3A2M3 Two component, sigma54 specific, transcriptional... 536 e-150 UniRef50_B8FMY7 Sigma54 specific transcriptional regulator, Fis ... 535 e-150 UniRef50_Q39TT6 Transcriptional regulator, Fis family / DNA-bind... 535 e-150 UniRef50_B5ZJF6 Transcriptional regulator, NifA, Fis Family n=4 ... 535 e-150 UniRef50_A9EN62 Sigma-54 dependent transcriptional regulator n=1... 535 e-150 UniRef50_A8ZZC1 Transcriptional regulator, NifA subfamily, Fis F... 535 e-150 UniRef50_C2KAU4 Sigma-54-dependent transcriptional regulator n=1... 535 e-150 UniRef50_A6GDL8 Sigma-54 dependent transcriptional regulator, Fi... 534 e-150 UniRef50_D2R1I6 Sigma 54 interacting domain protein n=1 Tax=Pire... 534 e-150 UniRef50_C8WE21 Transcriptional regulator, NifA, Fis Family n=4 ... 534 e-150 UniRef50_B8JAZ2 Two component, sigma54 specific, transcriptional... 534 e-150 UniRef50_Q1D1F9 DNA-binding reponse regulator HsfA n=3 Tax=Myxoc... 534 e-150 UniRef50_A6M003 Two component, sigma54 specific, transcriptional... 534 e-150 UniRef50_Q7UK84 Probable two-component response regulator n=1 Ta... 533 e-150 UniRef50_P05407 Nif-specific regulatory protein n=11 Tax=Rhizobi... 533 e-150 UniRef50_Q2IQU1 Transcriptional regulator, NifA subfamily, Fis f... 533 e-150 UniRef50_B5YHK7 SasR n=1 Tax=Thermodesulfovibrio yellowstonii DS... 533 e-149 UniRef50_D1CFK1 Two component, sigma54 specific, transcriptional... 533 e-149 UniRef50_A9G6P0 Sigma-54 dependent DNA-binding response regulato... 533 e-149 UniRef50_B3DZ60 DNA-binding response regulator, NtrC family (Con... 532 e-149 UniRef50_D2R3W1 Sigma54 specific transcriptional regulator, Fis ... 532 e-149 UniRef50_Q2LRC8 Transcriptional regulator containing sigma 54 in... 532 e-149 UniRef50_A8FQ36 Formate hydrogenlyase transcriptional activator,... 532 e-149 UniRef50_A6C332 Two component, sigma54 specific, transcriptional... 532 e-149 UniRef50_B8DJ70 Sigma54 specific transcriptional regulator, Fis ... 532 e-149 UniRef50_C9KM56 Sigma-54 dependent transcriptional regulator/sen... 531 e-149 UniRef50_D2QZ64 Transcriptional regulator, NifA subfamily, Fis F... 531 e-149 UniRef50_Q893M0 Putative sigma-54 interacting protein n=1 Tax=Cl... 531 e-149 UniRef50_C6E9E0 Two component, sigma54 specific, transcriptional... 530 e-149 UniRef50_C0QE85 FhlA n=1 Tax=Desulfobacterium autotrophicum HRM2... 530 e-149 UniRef50_A5G9U3 Two component, sigma54 specific, transcriptional... 530 e-149 UniRef50_B8IZ33 Two component, sigma54 specific, transcriptional... 530 e-149 UniRef50_D0LWE6 Transcriptional regulator, NifA subfamily, Fis F... 530 e-149 UniRef50_A9ET26 Transcriptional regulator n=2 Tax=Myxococcales R... 530 e-148 UniRef50_C0QRG3 Transcriptional regulatory protein ZraR n=2 Tax=... 529 e-148 UniRef50_Q022Z3 Transcriptional regulator, Fis family n=1 Tax=Ca... 529 e-148 UniRef50_Q39SU6 Two component, sigma54 specific, transcriptional... 529 e-148 UniRef50_A7HIM1 Two component, sigma54 specific, transcriptional... 529 e-148 UniRef50_C7PLV9 Sigma54 specific transcriptional regulator, Fis ... 528 e-148 UniRef50_Q6MMW8 Acetoacetate metabolism regulatory protein atoC ... 528 e-148 UniRef50_B8DQY9 Transcriptional regulator, NifA subfamily, Fis F... 528 e-148 UniRef50_C8R0P5 Two component, sigma54 specific, transcriptional... 527 e-148 UniRef50_A5D2K0 Transcriptional regulator n=2 Tax=Clostridia Rep... 527 e-148 UniRef50_Q1D552 Sigma-54 dependent DNA-binding reponse regulator... 527 e-148 UniRef50_B0VES5 Putative uncharacterized protein n=1 Tax=Candida... 527 e-148 UniRef50_Q01S08 Transcriptional regulator, NifA subfamily, Fis F... 527 e-148 UniRef50_Q1IL93 Two component, sigma54 specific, transcriptional... 526 e-147 UniRef50_A3ZZQ6 Nitrogen fixation protein anfA (Sigma-54 depende... 525 e-147 UniRef50_B5YK20 Response regulator HsfA n=1 Tax=Thermodesulfovib... 525 e-147 UniRef50_A1ATK4 Two component, sigma54 specific, transcriptional... 525 e-147 UniRef50_A9GA77 Protein kinase n=15 Tax=Bacteria RepID=A9GA77_SORC5 525 e-147 UniRef50_Q1Q0T6 Strongly similar to sigma 54 response regulator ... 525 e-147 UniRef50_Q2IEG0 Transcriptional regulator, Fis family / DNA-bind... 524 e-147 UniRef50_C0GUF2 Sigma54 specific transcriptional regulator, Fis ... 524 e-147 UniRef50_C0QMI0 Sigma-54 dependent two component transcriptional... 524 e-147 UniRef50_B9M610 Two component, sigma54 specific, transcriptional... 524 e-147 UniRef50_C7PBZ0 Two component, sigma54 specific, transcriptional... 524 e-147 UniRef50_Q53206 Nif-specific regulatory protein n=5 Tax=Alphapro... 524 e-147 UniRef50_Q1PYK0 Strongly similar to sigma 54 response regulator ... 524 e-147 UniRef50_A6GJF4 Sigma-54 dependent, Vanadium nitrogenase transcr... 524 e-147 UniRef50_Q086E2 Two component, sigma54 specific, transcriptional... 524 e-147 UniRef50_D2MLD9 Two component, sigma54 specific, transcriptional... 524 e-147 UniRef50_Q2LUG3 Transcriptional regulator containing GAF, AAA-ty... 524 e-147 UniRef50_C8W252 PAS modulated sigma54 specific transcriptional r... 524 e-147 UniRef50_Q1DC06 Sigma-54 dependent transcriptional regulator, Fi... 524 e-147 UniRef50_A3ZU96 Probable two-component response regulator n=1 Ta... 523 e-147 UniRef50_Q0SQI9 Phosphocarrier HPr/sensory box protein/sigma-54 ... 523 e-147 UniRef50_A0L6X2 Transcriptional regulator, NifA, Fis Family n=6 ... 523 e-147 UniRef50_A0LIA2 Sigma54 specific transcriptional regulator, Fis ... 523 e-147 UniRef50_B3E6R3 Two component, sigma54 specific, transcriptional... 523 e-146 UniRef50_B8DK61 Two component, sigma54 specific, transcriptional... 523 e-146 UniRef50_B8GM58 Transcriptional regulator, NifA subfamily, Fis F... 523 e-146 UniRef50_A8IQ96 Transcriptional regulator n=18 Tax=Proteobacteri... 523 e-146 UniRef50_A9AYA4 Two component, sigma54 specific, transcriptional... 523 e-146 UniRef50_B8FCN8 Transcriptional regulator, NifA subfamily, Fis F... 522 e-146 UniRef50_Q1PYM7 Similar to sigma 54 response regulator n=1 Tax=C... 522 e-146 UniRef50_D2QRC3 Sigma 54 interacting domain protein n=1 Tax=Spir... 522 e-146 UniRef50_C6HY50 Sigma54 specific transcriptional regulator, Fis ... 522 e-146 UniRef50_A8ZV27 Transcriptional regulator, Fis family n=2 Tax=De... 522 e-146 UniRef50_C0QIQ0 Sigma-54 dependent DNA-binding response regulato... 521 e-146 UniRef50_Q2LRW3 Response regulator containing sigma 54 interacti... 521 e-146 UniRef50_B5Y7I9 Acetoacetate metabolism regulatory protein AtoC ... 521 e-146 UniRef50_C4FI59 AAA family ATPase n=1 Tax=Sulfurihydrogenibium y... 521 e-146 UniRef50_A9F816 Protein kinase n=12 Tax=Bacteria RepID=A9F816_SORC5 521 e-146 UniRef50_B2S3B3 Response regulatory protein n=28 Tax=Spirochaeta... 520 e-146 UniRef50_P54931 Nif-specific regulatory protein n=9 Tax=Alphapro... 520 e-146 UniRef50_B8IZ98 Transcriptional regulator, NifA subfamily, Fis F... 520 e-146 UniRef50_B8GQ33 NifA subfamily transcriptional regulator n=1 Tax... 520 e-146 UniRef50_Q3ABV5 Sigma-54 dependent transcriptional regulator n=3... 519 e-145 UniRef50_UPI00016C585F ornithine decarboxylase inhibitor-putativ... 519 e-145 UniRef50_Q897M6 Transcriptional regulatory protein n=1 Tax=Clost... 519 e-145 UniRef50_UPI00016C4DD7 sigma-54 dependent transcriptional regula... 519 e-145 UniRef50_B4D0Z8 Two component, sigma54 specific, transcriptional... 518 e-145 UniRef50_D0LLW1 Two component, sigma54 specific, transcriptional... 518 e-145 UniRef50_C1ZGY0 Transcriptional regulator containing GAF, AAA-ty... 518 e-145 UniRef50_B4ULZ7 Transcriptional regulator, NifA, Fis Family n=2 ... 518 e-145 UniRef50_A1AUC3 Two component, sigma54 specific, transcriptional... 517 e-145 UniRef50_B8FIT8 PAS modulated sigma54 specific transcriptional r... 517 e-145 UniRef50_Q1JZC1 Two component, sigma54 specific, transcriptional... 517 e-145 UniRef50_B8GTB8 Two component, sigma54 specific, transcriptional... 517 e-145 UniRef50_B8FWA2 PAS modulated sigma54 specific transcriptional r... 517 e-145 UniRef50_B3E8H3 Two component, sigma54 specific, transcriptional... 517 e-145 UniRef50_Q1N5U9 Sigma-54 dependent transcriptional regulator/sen... 516 e-144 UniRef50_A4J593 Sigma54 specific transcriptional regulator, Fis ... 515 e-144 UniRef50_C0QC42 Putative transcriptional activator n=1 Tax=Desul... 515 e-144 UniRef50_Q1IQS1 Two component, sigma54 specific, transcriptional... 515 e-144 UniRef50_Q2LXQ0 Response regulator with sigma 54 interaction dom... 515 e-144 UniRef50_Q1Q6P9 Similar to Sigma-54 dependent transcriptional re... 514 e-144 UniRef50_Q1PZ68 Strongly similar to sigma 54 response regulator ... 514 e-144 UniRef50_D0TB92 Two-component system response regulator n=1 Tax=... 514 e-144 UniRef50_A4J599 Sigma54 specific transcriptional regulator, Fis ... 514 e-144 UniRef50_B2V8F5 Two component, sigma54 specific, transcriptional... 514 e-144 UniRef50_A0LM32 Two component, sigma54 specific, transcriptional... 513 e-144 UniRef50_C1ZJW6 Transcriptional regulator containing GAF, AAA-ty... 513 e-144 UniRef50_A3ESE7 Sigma54 specific transcriptional regulator, Fis ... 513 e-144 UniRef50_B8FXH0 PAS modulated sigma54 specific transcriptional r... 513 e-144 UniRef50_B8F9K7 Two component, sigma54 specific, transcriptional... 513 e-144 UniRef50_Q023H8 Two component, sigma54 specific, transcriptional... 513 e-144 UniRef50_C0GRG2 PAS modulated sigma54 specific transcriptional r... 512 e-143 UniRef50_Q0EZK3 Response regulator of hydrogenase 3 activity (Se... 512 e-143 UniRef50_C1ZB08 Sigma-54 interacting regulator n=1 Tax=Planctomy... 512 e-143 UniRef50_B8FZI3 Two component, sigma54 specific, transcriptional... 512 e-143 UniRef50_A5G703 Two component, sigma-54 specific, transcriptiona... 512 e-143 UniRef50_D2R8T8 Two component, sigma54 specific, transcriptional... 511 e-143 UniRef50_UPI00016C54BB two component, sigma54 specific, transcri... 511 e-143 UniRef50_B8FL05 Two component, sigma54 specific, transcriptional... 511 e-143 Sequences not found previously or not previously below threshold: >UniRef50_P19323 Formate hydrogenlyase transcriptional activator n=72 Tax=Enterobacteriaceae RepID=FHLA_ECOLI Length = 692 Score = 863 bits (2231), Expect = 0.0, Method: Composition-based stats. Identities = 692/692 (100%), Positives = 692/692 (100%) Query: 1 MSYTPMSDLGQQGLFDITRTLLQQPDLASLCEALSQLVKRSALADNAAIVLWQAQTQRAS 60 MSYTPMSDLGQQGLFDITRTLLQQPDLASLCEALSQLVKRSALADNAAIVLWQAQTQRAS Sbjct: 1 MSYTPMSDLGQQGLFDITRTLLQQPDLASLCEALSQLVKRSALADNAAIVLWQAQTQRAS 60 Query: 61 YYASREKDTPIKYEDETVLAHGPVRSILSRPDTLHCSYEEFCETWPQLDAGGLYPKFGHY 120 YYASREKDTPIKYEDETVLAHGPVRSILSRPDTLHCSYEEFCETWPQLDAGGLYPKFGHY Sbjct: 61 YYASREKDTPIKYEDETVLAHGPVRSILSRPDTLHCSYEEFCETWPQLDAGGLYPKFGHY 120 Query: 121 CLMPLAAEGHIFGGCEFIRYDDRPWSEKEFNRLQTFTQIVSVVTEQIQSRVVNNVDYELL 180 CLMPLAAEGHIFGGCEFIRYDDRPWSEKEFNRLQTFTQIVSVVTEQIQSRVVNNVDYELL Sbjct: 121 CLMPLAAEGHIFGGCEFIRYDDRPWSEKEFNRLQTFTQIVSVVTEQIQSRVVNNVDYELL 180 Query: 181 CRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYST 240 CRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYST Sbjct: 181 CRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYST 240 Query: 241 HYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTL 300 HYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTL Sbjct: 241 HYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTL 300 Query: 301 CLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERL 360 CLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERL Sbjct: 301 CLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERL 360 Query: 361 VDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIAR 420 VDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIAR Sbjct: 361 VDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIAR 420 Query: 421 AIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLD 480 AIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLD Sbjct: 421 AIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLD 480 Query: 481 EVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYY 540 EVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYY Sbjct: 481 EVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYY 540 Query: 541 RLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRE 600 RLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRE Sbjct: 541 RLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRE 600 Query: 601 LENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVV 660 LENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVV Sbjct: 601 LENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVV 660 Query: 661 AGPKGAAQRLGLKRTTLLSRMKRLGIDKSALI 692 AGPKGAAQRLGLKRTTLLSRMKRLGIDKSALI Sbjct: 661 AGPKGAAQRLGLKRTTLLSRMKRLGIDKSALI 692 >UniRef50_P40734 Formate hydrogenlyase transcriptional activator n=63 Tax=Enterobacteriaceae RepID=FHLA_SALTY Length = 692 Score = 839 bits (2168), Expect = 0.0, Method: Composition-based stats. Identities = 625/691 (90%), Positives = 653/691 (94%) Query: 1 MSYTPMSDLGQQGLFDITRTLLQQPDLASLCEALSQLVKRSALADNAAIVLWQAQTQRAS 60 MSYTPMSDLGQQGLFDITRTLLQQPDLASL EALSQLVKRSALAD+A IVLWQAQ+QRA Sbjct: 1 MSYTPMSDLGQQGLFDITRTLLQQPDLASLSEALSQLVKRSALADSAGIVLWQAQSQRAQ 60 Query: 61 YYASREKDTPIKYEDETVLAHGPVRSILSRPDTLHCSYEEFCETWPQLDAGGLYPKFGHY 120 YYA+RE P++YEDETVLAHGPVR ILSRPD LHC++ EF ETWPQL A GLYP+FGHY Sbjct: 61 YYATRENGRPVEYEDETVLAHGPVRRILSRPDALHCNFHEFTETWPQLAASGLYPEFGHY 120 Query: 121 CLMPLAAEGHIFGGCEFIRYDDRPWSEKEFNRLQTFTQIVSVVTEQIQSRVVNNVDYELL 180 CL+PLAAEG IFGGCEFIR +DRPWSEKE++RL TFTQIV VV EQIQ+RV NNVDY+LL Sbjct: 121 CLLPLAAEGRIFGGCEFIRQEDRPWSEKEYDRLHTFTQIVGVVAEQIQNRVNNNVDYDLL 180 Query: 181 CRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYST 240 CRERDNFRILVAITNAVLSRLD+DELVSEVAKEIH+YF+ID ISIVLRSHRKNKLNIYST Sbjct: 181 CRERDNFRILVAITNAVLSRLDIDELVSEVAKEIHHYFNIDAISIVLRSHRKNKLNIYST 240 Query: 241 HYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTL 300 HYLD+ HPAHEQSEVDEAGTLTERVFKSKEMLLINL+ERD LAPYERMLFDTWGNQIQTL Sbjct: 241 HYLDEHHPAHEQSEVDEAGTLTERVFKSKEMLLINLNERDPLAPYERMLFDTWGNQIQTL 300 Query: 301 CLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERL 360 CLLPLMSG TMLGVLKLAQCEEKVFTT NL LLRQIAERVAIAVDNALAYQEIHRLKERL Sbjct: 301 CLLPLMSGKTMLGVLKLAQCEEKVFTTANLKLLRQIAERVAIAVDNALAYQEIHRLKERL 360 Query: 361 VDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIAR 420 VDENLALTEQLNNVDSEFGEIIGRSEAMY+VLKQVEMVAQSDSTVLILGETGTGKELIAR Sbjct: 361 VDENLALTEQLNNVDSEFGEIIGRSEAMYNVLKQVEMVAQSDSTVLILGETGTGKELIAR 420 Query: 421 AIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLD 480 AIHNLSGR+ RRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLD Sbjct: 421 AIHNLSGRSGRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLD 480 Query: 481 EVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYY 540 EVGDMPLELQPKLLRVLQEQEFERLGSNK+IQTDVRLIAATNRDLKKMVADREFR+DLYY Sbjct: 481 EVGDMPLELQPKLLRVLQEQEFERLGSNKLIQTDVRLIAATNRDLKKMVADREFRNDLYY 540 Query: 541 RLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRE 600 RLNVFPI LPPLRERPEDIPLL KAFTFKIARR+GRNIDSIPAETLRTLS+MEWPGNVRE Sbjct: 541 RLNVFPIQLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSSMEWPGNVRE 600 Query: 601 LENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVV 660 LENV+ERAVLLTRGNVLQLSLPDI P+T P AT EGEDEYQLI+RVLKETNGVV Sbjct: 601 LENVVERAVLLTRGNVLQLSLPDITAVTPDTSPVATESDKEGEDEYQLIIRVLKETNGVV 660 Query: 661 AGPKGAAQRLGLKRTTLLSRMKRLGIDKSAL 691 AGPKGAAQRLGLKRTTLLSRMKRLGIDK AL Sbjct: 661 AGPKGAAQRLGLKRTTLLSRMKRLGIDKDAL 691 >UniRef50_Q2RXL4 Transcriptional regulator, NifA subfamily, Fis family n=6 Tax=Proteobacteria RepID=Q2RXL4_RHORT Length = 733 Score = 748 bits (1933), Expect = 0.0, Method: Composition-based stats. Identities = 308/718 (42%), Positives = 413/718 (57%), Gaps = 38/718 (5%) Query: 12 QGLFDITRTLLQQPDLASLCEALSQLVKRSALADNAAIVLWQAQTQRASYYASREKDTPI 71 + L D++ L DL SL AL L L D ++L+ A T + ++ + Sbjct: 12 ELLLDVSEILELNRDLNSLLGALCDLPASIGLFDYVNLLLYDAPTDTMTLFSQGDVGGGY 71 Query: 72 KYEDETVLAHGPVRSILSRPDTLHCSYEEFCETWPQLDAGGLYPKFGHYCLMPLAAEGHI 131 D GP + + +R CS EE+ + ++ A + G YC MPL Sbjct: 72 ARIDGLAPTEGPGQVVWARQRPFVCSGEEYRRHFLKIAALRRNQRVGLYCQMPLTTSQRR 131 Query: 132 FGGCEFIRYDDRPWSEKEFNRLQTFTQIVSVVTEQIQSRVVNNVDYELLCRERDNFRILV 191 GG EFI + E + L+ ++++ E + ++ E L ERD+ ILV Sbjct: 132 LGGVEFISSRPTTYDEDDLTFLRRVASVIAISVENALIGEMRQMEEERLRGERDHNHILV 191 Query: 192 AITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQHPAHE 251 +TNAV+S+L +++LV EV++ IH +F +D +S+ L + S ++ P Sbjct: 192 EVTNAVISKLKLEDLVDEVSRSIHRFFGVDFVSLDLVDPATATIKSRSVYFQKGLGPVWG 251 Query: 252 QSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTM 311 ++ + +F++K ++ + LA + Q C +PL+S + Sbjct: 252 SAQGPLGASPMAPLFETKAPRILARADLGALARGHDQMTLLTNAGFQVACGIPLLSAGHV 311 Query: 312 LGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALT--- 368 LGVL LA E FT N+ LL ++A R+ IAV+NALAY EI RLK++L EN L Sbjct: 312 LGVLTLASRERDKFTDYNIGLLGEVASRICIAVENALAYGEISRLKDQLSRENKQLAKER 371 Query: 369 ---EQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNL 425 E+ +FG+IIG S A+ VL+QVE+VA SDSTVLILGETGTGKELIARAIH L Sbjct: 372 YYLEEEIRRTEDFGDIIGISPAIRGVLEQVELVADSDSTVLILGETGTGKELIARAIHML 431 Query: 426 SGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDM 485 S R R M+K+NCAA+P+ LLESDLFGHE+GAFTGA AQ+ GRFELAD+ +LFLDEVGD+ Sbjct: 432 SQRKKRTMIKVNCAAIPSALLESDLFGHEKGAFTGAIAQKSGRFELADRGTLFLDEVGDI 491 Query: 486 PLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVF 545 P++LQPKLLR LQE+E ER+G ++ I DVR+IAATNRDL MV R FR DLYYRLNVF Sbjct: 492 PIDLQPKLLRALQEREIERVGGHQPIPVDVRMIAATNRDLTGMVEKRLFRGDLYYRLNVF 551 Query: 546 PIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVI 605 PI +PPLRER EDIPL+A F K AR++ R I++ AET+ L N+ WPGNVREL+NVI Sbjct: 552 PILIPPLRERREDIPLMADYFMRKTARKMNRAIEAFSAETMDMLLNLPWPGNVRELQNVI 611 Query: 606 ERAVLLTRGNVLQL-------------SLP-------------------DIVLPEPETPP 633 ERAV+LT+G VL L +LP LP P Sbjct: 612 ERAVILTKGPVLHLPATELRHHLAPSAALPSEDAVIPLRAAVLPSAASAPDPLPPPAGSS 671 Query: 634 AATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSAL 691 E I+RVL+ETNG+V GP+GAA LG+KRTTLLSRM+RLGI + Sbjct: 672 PNPGDLAGEAIERDQILRVLRETNGIVGGPRGAAAHLGMKRTTLLSRMRRLGISPKEV 729 Score = 62.5 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 71/182 (39%), Gaps = 4/182 (2%) Query: 185 DNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLD 244 + + +L+ ++ + D++ L+ + D ++++L + + ++S + Sbjct: 9 ERYELLLDVSEILELNRDLNSLLGALCDLPASIGLFDYVNLLLYDAPTDTMTLFSQGDVG 68 Query: 245 KQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLP 304 + + E + V+ + + + E L ++ C +P Sbjct: 69 GGYARIDGLAPTEGPG--QVVWARQRPFVCSGEEYRRHFLKIAALRR--NQRVGLYCQMP 124 Query: 305 LMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDEN 364 L + LG ++ + +L LR++A +AI+V+NAL + +ERL E Sbjct: 125 LTTSQRRLGGVEFISSRPTTYDEDDLTFLRRVASVIAISVENALIGEMRQMEEERLRGER 184 Query: 365 LA 366 Sbjct: 185 DH 186 >UniRef50_Q026M7 Transcriptional regulator, NifA subfamily, Fis Family n=4 Tax=Bacteria RepID=Q026M7_SOLUE Length = 706 Score = 725 bits (1873), Expect = 0.0, Method: Composition-based stats. Identities = 263/685 (38%), Positives = 388/685 (56%), Gaps = 26/685 (3%) Query: 12 QGLFDITRTLLQQPDLASLCEALSQLVKRSALADNA---------AIVLWQAQTQRASYY 62 + L +++ + D L A+++ + R D +LW A + Sbjct: 25 EALIRVSQAIGAHRDPKELFRAMTRELHRVMQFDGIVIAQYDEASNEILWNACEVCSQQG 84 Query: 63 ASREKDTPIKYEDETVLAHGPVRSILSRPDTLHCSYEEFCETWPQLDAGGLYPKFGHYCL 122 A R D P + + R + L + +P++ F C Sbjct: 85 AVRPPDIPA--------DETITKWVYQRQEPLVIPALDQETRFPRMIEFLRSKGFQSICA 136 Query: 123 MPLAAEGHIFGGCEFIRYDDRPWSEKEFNRLQTFTQIVSVVTEQIQSRVVNNVDYELLCR 182 +PL G + ++E L ++ + + + V L R Sbjct: 137 LPLTTVHRRIGSVAVASKRPDAYCKEEVRFLSLVADQAALAIDDALNFETSQVAQAALQR 196 Query: 183 ERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHY 242 + D R+L+ + N++ S L++ EL+ ++ I D + + L +L +Y+ + Sbjct: 197 KNDRLRLLLEVNNSIASNLELRELLRAISASIRPVMQCDGVGVALPEGENQQLRVYALDF 256 Query: 243 LDKQHPAHEQSEVDEAGTLTE-RVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLC 301 + E + R F++ E I D P ++ +C Sbjct: 257 PNGNGRVREDILIPANEDSPGARAFQNGEPANILSASIDPTDPLAT------AEGLKAVC 310 Query: 302 LLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLV 361 +PL+S + +G+L LA+ E F+ ++ L + +VAIAV+NALAY EI LK+RL Sbjct: 311 HIPLISRNRTVGLLSLARLEPVAFSPRDIEFLSLVGNQVAIAVENALAYHEISALKDRLA 370 Query: 362 DENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARA 421 E + L +++ + F EI+GRS+A+ +VL+++E VA +DSTVLI GETGTGKELIARA Sbjct: 371 QEKIYLEDEI-RSELNFEEIVGRSQALRTVLQEIETVAPTDSTVLIYGETGTGKELIARA 429 Query: 422 IHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDE 481 IHNLS R+ VK+NCAA+P GLLES++FGHE+GAFTGA AQRIGRFELA ++FLDE Sbjct: 430 IHNLSSRSRNSFVKLNCAAIPTGLLESEMFGHEKGAFTGAVAQRIGRFELAHHGTVFLDE 489 Query: 482 VGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYR 541 +G++PLELQPKLLRVLQE+EFERLGS++ ++TD RLIAATNRDL MV DR FR+DL+YR Sbjct: 490 IGEIPLELQPKLLRVLQEREFERLGSSRTMRTDARLIAATNRDLATMVEDRNFRADLFYR 549 Query: 542 LNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVREL 601 LNVFP+ +P LR+RPEDIPLL + F + ARR+G+ +D+IP ET+ L WPGN+REL Sbjct: 550 LNVFPVQVPALRDRPEDIPLLVRHFVQQFARRMGKAVDTIPTETMNVLVRYHWPGNIREL 609 Query: 602 ENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVVA 661 +N++ERAV+L+ G VL++ L D+ L P P A E + I+ L+ + V++ Sbjct: 610 QNLLERAVILSAGPVLKVPLNDLQLQAP-APTTARKTETLESAERRHILEALEAADWVIS 668 Query: 662 GPKGAAQRLGLKRTTLLSRMKRLGI 686 GPKGAA+ LGLKR+TL +RM++LGI Sbjct: 669 GPKGAAEALGLKRSTLQARMEKLGI 693 >UniRef50_A0KL56 Formate hydrogenlyase transcriptional activator n=5 Tax=Gammaproteobacteria RepID=A0KL56_AERHH Length = 709 Score = 700 bits (1808), Expect = 0.0, Method: Composition-based stats. Identities = 285/720 (39%), Positives = 385/720 (53%), Gaps = 49/720 (6%) Query: 1 MSYTPMSDLG---QQGLFDITRTLLQQPDLASLCEALSQLVKRSALADNAAIVLWQAQTQ 57 +S P++D+ G +++ LL L + L+++ D ++L + Sbjct: 4 VSAIPLTDISPIWDDGFLSLSKNLLSAVTLDDFIKKLNRIQPCFRQVDRVNLILNLGTGE 63 Query: 58 RASYYASREKDTPIKYEDETVLAHGPVRSILSRPDTLHCSYEE--------FCETWPQLD 109 A +Y E+ GP I + D LH S E+ F QL Sbjct: 64 EAVFYYLGEQ--------------GPAHLICRKAD-LHFSREQAIVLPASRFRHRCEQLA 108 Query: 110 AGGLYPKFGHYCLMPLAAEGHIFGGCEFIRYDDRPWSEKEFNRLQTFTQIVSVVTEQIQS 169 + +Y YC +P+ GG EFI + + + +L IV++ E + Sbjct: 109 STPVYDGLHSYCQLPITTARSHLGGVEFISREANAFPMETLAKLTQLAAIVAIALENVLD 168 Query: 170 RVVNNVDYELLCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRS 229 + L ERD+ +ILV +TNAV+ + + EL + +H++F I + + + Sbjct: 169 KERTLEQANSLRLERDSCKILVDVTNAVIKLVRIAELPQSLFTILHHHFGISSLCLAEYN 228 Query: 230 HRKNKLNIYSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERML 289 + Y + ++ P E L + S E + + R Sbjct: 229 ATSDSFKSYLVNQQQREQPGIINHSCFEKNCLQGALGHS-EPFFLYREQGHGCQSSCRFT 287 Query: 290 FDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALA 349 + C+LPL +LGVL L+ + F +++LL Q+A R AIA++N A Sbjct: 288 SQILPPDADSSCILPLRYRGNLLGVLILSHPQADFFADLDISLLEQVAARTAIAMNNVQA 347 Query: 350 YQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILG 409 QEI L +F II +S M VL++V++VAQSD TVLILG Sbjct: 348 QQEISNTTGAREK---TLRVDGPAPQGDFANIIYQSAVMEKVLEKVKLVAQSDCTVLILG 404 Query: 410 ETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRF 469 ETGTGKELIA+AIH LS R++ MVK+NCAA+P GL+ESDLFGHE+GAFTGA QRIGRF Sbjct: 405 ETGTGKELIAQAIHALSARHDHEMVKVNCAAIPTGLIESDLFGHEKGAFTGALTQRIGRF 464 Query: 470 ELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMV 529 E A K +LFLDEVGDMPL+LQPKLLRVLQE E ER+G++ I DVRL+AATN DL MV Sbjct: 465 ERAHKGTLFLDEVGDMPLDLQPKLLRVLQEHELERVGNSNPIAIDVRLVAATNCDLLSMV 524 Query: 530 ADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTL 589 ++ FRSDLYYRLNVFPI LPPLRER EDIPLL F KIA+R+ R I SIPA+ ++ L Sbjct: 525 KNKRFRSDLYYRLNVFPIELPPLRERREDIPLLVNFFIKKIAKRMRRTITSIPADAMKML 584 Query: 590 SNMEWPGNVRELENVIERAVLLTRGNVLQL-------------------SLPDIVLPEPE 630 ++ W GN+RELEN+IERAV++TRG+VL L P L Sbjct: 585 VSLPWYGNIRELENIIERAVVMTRGHVLNLSPDELLPLKGFHKIETLVYDEPARELFREP 644 Query: 631 TPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSA 690 P +GEDE I+R LK NG+VAG +GAAQRLG+KRTTLLS+MKRLGI Sbjct: 645 LPALPQGDEAQGEDERVSIIRALKACNGIVAGERGAAQRLGMKRTTLLSKMKRLGISAKD 704 >UniRef50_Q1ZUC7 Formate hydrogenlyase transcriptional activator n=4 Tax=Vibrionaceae RepID=Q1ZUC7_PHOAS Length = 717 Score = 681 bits (1758), Expect = 0.0, Method: Composition-based stats. Identities = 265/702 (37%), Positives = 392/702 (55%), Gaps = 33/702 (4%) Query: 11 QQGLFDITRTLLQQPDLASLCEALSQLVKRSALADNAAIVLWQAQTQRASYYASREKDTP 70 + L ++ LL D++ + + L+ + ++L + S Y ++D Sbjct: 24 ESDLMTFSKALLSINDISGVMDFLNNEDLLFINVERVNLLLKNDLDSQPSLYYL-DQDKQ 82 Query: 71 IKYEDETVLAHGPVRSILSRPDTLHCSYEEFCETWPQLDAGGLYPKFGHYCLMPLAAEGH 130 + D T G + + R E +T+PQL+ Y +YC +PL+ Sbjct: 83 CQQFDYTGSITG-LHGVTMRDYCHQMDGETLYQTFPQLENHPAYDSVFNYCKIPLSICNQ 141 Query: 131 IFGGCEFIRYDDRPWSEKEFNRLQTFTQIVSVVTEQIQSRVVNNVDYELLCRERDNFRIL 190 G E+I P + + + F ++S + E I + E L E++NF++L Sbjct: 142 PLGAIEYINLT-MPDDSESEKQFKLFNNMISAMIEHIIEHQTASTFTEKLTTEKNNFQVL 200 Query: 191 VAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQHPAH 250 V +TN V+S+ EL+ + + ++ +FD+ D+SI+ N +S +++ + Sbjct: 201 VDVTNTVISQSTKKELIGSLLRFLYQHFDMTDLSIIQLQD--GHYNQHSACFINNEI--D 256 Query: 251 EQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDT 310 Q L + K+ + + +N + + + ++++T C++PL+ Sbjct: 257 YQCHFFTNDKLIKNAIKNNKPVFLNAIDIKKMQADNNS--PYFPSRVKTACVMPLVFRGI 314 Query: 311 MLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQ 370 +G + + E + T+L L +QIA RVA+A+ + +Q + N+ ++ Sbjct: 315 AVGYISFMKPIEAPYQNTDLELFKQIAARVALAMHSIKTHQASTPNQPITKFVNI---DE 371 Query: 371 LNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNN 430 F +II +SE M VL+QV +VA DSTVLILGE+GTGKELIARAIH LS R+ Sbjct: 372 GMGEHVIFDDIISQSEVMNKVLEQVALVASCDSTVLILGESGTGKELIARAIHKLSLRSK 431 Query: 431 RRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQ 490 MVKMNCAA+PAGL ES+LFGHERGAFTGA +QR+GRFE A K +LFLDE+GDMPLELQ Sbjct: 432 TDMVKMNCAAIPAGLFESELFGHERGAFTGAISQRVGRFEQAHKGTLFLDEIGDMPLELQ 491 Query: 491 PKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLP 550 PKLLR LQE E ER+G N +I DVR++ ATN DL + V +++FR+DLYYRLNVFPI +P Sbjct: 492 PKLLRALQENEIERVGKNALISVDVRIVVATNVDLLRRVEEKKFRNDLYYRLNVFPIQIP 551 Query: 551 PLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVL 610 PLRER EDIPLL K FT ++A+++G+ I +I AE L +S WPGNVREL N +ER+V+ Sbjct: 552 PLRERAEDIPLLVKHFTRELAKKMGKTITAIAAEDLAVMSVFPWPGNVRELRNFVERSVI 611 Query: 611 LTRGNVLQL----------------SLPDIVLPEPETPPAATVVALEGEDEYQLI----- 649 LTRGNVL + V PE A++G+ +I Sbjct: 612 LTRGNVLNVPVHELKAVSHSACVPTEKVPPVNPEAAGVINTPEPAVKGDVVKPIIDKADV 671 Query: 650 VRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSAL 691 ++ LK +GVVAGP GAA +LGLKRTTLLSRM+++GI+ Sbjct: 672 IKALKACHGVVAGPNGAANQLGLKRTTLLSRMQKMGINSQDF 713 >UniRef50_D0Z425 Formate hydrogenlyase transcriptional activator n=1 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0Z425_LISDA Length = 739 Score = 674 bits (1740), Expect = 0.0, Method: Composition-based stats. Identities = 253/728 (34%), Positives = 386/728 (53%), Gaps = 60/728 (8%) Query: 11 QQGLFDITRTLLQQPDLASLCEALSQLVKRSALADNAAIVLWQAQTQRASYYASREKDTP 70 + L ++ LL D++ + L+ D ++L + Y D Sbjct: 24 EADLMSFSKALLSINDISGVMTFLNNEDLLFIQVDRVNLLLKNNIDDTPTLYFL---DNG 80 Query: 71 IKYEDETVLAHGPVRSILSRPDTLH-CSYEEFCETWPQLDAGGLYPKFGHYCLMPLAAEG 129 + ++ H ++ + H S E +T+PQL Y YC +PL G Sbjct: 81 NEQKNYQYNQHSLALHKIASCEYYHDISGHELYQTFPQLVDHPAYYDVNRYCKIPLLIAG 140 Query: 130 HIFGGCEFIRYDDRPWSEKEFNRLQTFTQIVSVVTEQIQSRVVNNVDYELLCRERDNFRI 189 G E+I + S + + + F +++ + E I + + + L E+ NF++ Sbjct: 141 KPLGAIEYINHKL-ADSIESERQFKLFNNMIAAMIEHIIEHQLASDFTQQLSNEKKNFQV 199 Query: 190 LVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQHPA 249 LV ITN V+S+ EL+S + ++ +F + ++SI+ + + ++ + Sbjct: 200 LVDITNTVISQSTKKELISSLLHFLYQHFAMTELSIIQLQ-DNHYMQMFCGLNNNNTEFH 258 Query: 250 HEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGD 309 D + + ++ + +L++ ++ + + E + +++++ C++P++ Sbjct: 259 CHFFNDD---KMIKHAIENNKPVLLDHNQLEQIRQDENG--PYFPSKVKSACIVPMVFRG 313 Query: 310 TMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTE 369 +G + + E + ++ L++QIA RVA+A+ + A+ R E E Sbjct: 314 LTIGYICYMKRETLNYQQYDIELVQQIASRVALAMHSIKAH---QATLPRTETEQYVSIE 370 Query: 370 QLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRN 429 + + + F +II +SEAM VL++V MVA DSTVLILGE+GTGKELIARAIH +S R+ Sbjct: 371 ESYDEHAIFDDIISQSEAMNQVLEKVAMVASCDSTVLILGESGTGKELIARAIHKMSLRS 430 Query: 430 NRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLEL 489 RMVKMNCAA+PAGL ES+LFGHERGAFTGA +QR+GRFE A K +LFLDE+GDMPLEL Sbjct: 431 KTRMVKMNCAAIPAGLFESELFGHERGAFTGAISQRVGRFEQAHKGTLFLDEIGDMPLEL 490 Query: 490 QPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHL 549 QPKLLR LQE E ER+G N++I DVR++ ATN DL MV ++FR+DLYYRLNVFPI + Sbjct: 491 QPKLLRALQENEIERVGKNQLISVDVRIVVATNVDLLAMVDAKQFRNDLYYRLNVFPIEV 550 Query: 550 PPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAV 609 PPLR+R EDIPLL K F ++A+++G+ I +I A L + WPGNVREL N +ER+V Sbjct: 551 PPLRQRAEDIPLLVKHFARQLAQKMGKKITAIAASDLELMQRFSWPGNVRELHNFVERSV 610 Query: 610 LLTRGNVLQL----------------------------------SLPD------------ 623 +LTRG+VL + LP Sbjct: 611 ILTRGHVLNIPVDELISLQPHIVQNSRKMESQASLSKTSLKQAQELPQVASIDDLTSSGS 670 Query: 624 IVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKR 683 + +T V + + +I+ LK GV+AGP GAA LGLKRTTLLSRM++ Sbjct: 671 ESVCSVDTAAKNEVKKVRPIVDQSMIINALKRCQGVIAGPNGAANMLGLKRTTLLSRMQK 730 Query: 684 LGIDKSAL 691 +GI Sbjct: 731 MGISSQDY 738 >UniRef50_P71229 Hydrogenase-4 transcriptional activator n=45 Tax=Enterobacteriaceae RepID=HYFR_ECOLI Length = 670 Score = 660 bits (1703), Expect = 0.0, Method: Composition-based stats. Identities = 291/631 (46%), Positives = 391/631 (61%), Gaps = 23/631 (3%) Query: 79 LAHGPVRSILSRPDTLHCSYEEFCETW----PQLDAGGLYPK-FGHYCLMPLAAEGHIFG 133 PV+ I LH F + + A Y Y + Sbjct: 46 PPFSPVQLI-----ELHVLKSNFYYRYHDDGSDVTATTEYQGEMVDYSRHAVLLGSSGMA 100 Query: 134 GCEFIRYDDRPWSEKEFNRLQTFTQIVSVVTEQIQSRVVNNVDYELLCRERDNFRILVAI 193 FIR ++ ++ +I++ V + + V LL ++RD+ R+LV I Sbjct: 101 ELRFIRTHGSRFTSQDCTLFNWLARIITPVLQSWLNDEEQQVALRLLEKDRDHHRVLVDI 160 Query: 194 TNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQHPAHEQS 253 TNAVLS LD+D+L+++VA+EIH++F + +S+VL HRKN+ L H A Sbjct: 161 TNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCACLPR 220 Query: 254 EVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLG 313 + L + ++++ L + + L + +L N ++ L+PL G+ G Sbjct: 221 CMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLTFGNHTPG 280 Query: 314 VLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNN 373 L LA +F+ N LL+ IA+R+AIAV NA A++ + L+E L EN L+EQL + Sbjct: 281 ALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLS 340 Query: 374 VDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRM 433 + G+II +S+AM +L+QV++VA+SDSTVLI GETGTGKE+IARAIH LS R ++ + Sbjct: 341 -NLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPL 399 Query: 434 VKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKL 493 VK+NCAA+PA LLES+LFGH++GAFTGA GRFE+AD +LFLDE+GD+PLELQPKL Sbjct: 400 VKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKL 459 Query: 494 LRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLR 553 LRVLQE+E ERLG ++ I +VR+IAATNRDL +MV DR+FRSDL+YRLNVFP+ LPPLR Sbjct: 460 LRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLR 519 Query: 554 ERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTR 613 +RPEDIPLLAK FT K+AR + R ID+IP E LR L + +WPGNVRELENVIERAVLLTR Sbjct: 520 DRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTR 579 Query: 614 GNVLQLSL------------PDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVVA 661 GN L L L D L E+E Q IV+VL+ETNG+VA Sbjct: 580 GNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVA 639 Query: 662 GPKGAAQRLGLKRTTLLSRMKRLGIDKSALI 692 GP+GAA RLG+KRTTLLSRM+RLGI ++ Sbjct: 640 GPRGAATRLGMKRTTLLSRMQRLGISVREVL 670 >UniRef50_B4DAQ1 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DAQ1_9BACT Length = 987 Score = 644 bits (1662), Expect = 0.0, Method: Composition-based stats. Identities = 224/735 (30%), Positives = 337/735 (45%), Gaps = 106/735 (14%) Query: 7 SDLGQQGLFDITRTLLQQPDLASLCEALSQLVKRSALADNAAIVLWQAQTQRASYYASRE 66 + + + L +ITR + L AL++ ++ + D I L A R + + Sbjct: 307 THIETEALLNITRAIGHHLQRDVLFGALAECLQTAVPTDCFGIALPVA-GARIQAHILNQ 365 Query: 67 KDTPIKYEDETV--LAHGPVRSILSRPDTLHC-SYEEFCETWPQLDAGGLYPKFGHYCLM 123 K+ + T+ ++ + + E E +P+ + C++ Sbjct: 366 KNIRSEGAPPTLHEAKGSAAEWVMKNREWYVAATRREVSERFPKTSEMMQREQMESACVL 425 Query: 124 PLAAEGHIFGGCEFIRYDDRPWSEKEFNRLQTFTQIVSVVTEQIQSRVVNN------VDY 177 PL A + G F+ ++ + + V+V + + Sbjct: 426 PLVAGDRVRGALFFLAAGKESYAALQHAFMNQVASAVAVALDDCLVQEEMRRLGEELAAQ 485 Query: 178 ELLCRERDNFRILVAITNAVLSRLDMDELVSEVAKEI----------HYYFDIDDISIVL 227 ++ E+ + + + +E ++ E ++ + +I + Sbjct: 486 KIARLEQQKEEVTHELEETSKALDASEERFRDLFDEAPIAYVHEELDSHFIRANRAAIRI 545 Query: 228 R-----SHRKNKLNIYSTHYLDKQHPAHEQSE-VDEAGTLTERVFK-----SKEMLLINL 276 ++ D Q E E + + V + + + I Sbjct: 546 LGIKPEDVPHTYGKTFAPDTPDAQRRMREAFESIGRGTDTSGVVLEMRRKDNGKPFWIQW 605 Query: 277 HERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQI 336 R D G +T+ I Sbjct: 606 WSRP----------DPSGKYTRTM--------------------------------FLDI 623 Query: 337 AERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVE 396 +RV + + K RL +N L E++ + F EI+G S ++ VL+QV+ Sbjct: 624 TDRVLM-----------EQDKARLEAQNTYLQEEIRSQH-NFVEIVGNSPSLLQVLRQVD 671 Query: 397 MVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERG 456 VA +DSTVLI GETGTGKELIARAIH+ S R R +VK+NC A+ GL+ES+LFGH +G Sbjct: 672 RVASTDSTVLICGETGTGKELIARAIHDRSPRRERPLVKVNCGAISTGLVESELFGHVKG 731 Query: 457 AFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVR 516 AFTGA A R GRFELAD ++FLDEVG++P E Q KLLRVLQEQEFE +GS K ++ DVR Sbjct: 732 AFTGAIANREGRFELADGGTIFLDEVGELPPETQVKLLRVLQEQEFEPIGSTKTVKVDVR 791 Query: 517 LIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGR 576 +IAATNRDL+ MV + +FRSDL+YRLNV P+ +PPLR+R DIPLL F K AR+LG+ Sbjct: 792 VIAATNRDLETMVREGKFRSDLFYRLNVVPLTMPPLRQRANDIPLLTMFFLEKFARKLGK 851 Query: 577 NIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLS---LPD---------- 623 ++ I ET+ L WPGN+REL+NVIERAV+L+ G++L + LP Sbjct: 852 SLGQIAEETMARLCQYPWPGNIRELQNVIERAVVLSTGSLLTVEKGALPGATGVMAQGPG 911 Query: 624 --------IVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRT 675 TP AT + E Q I VL++TN + G GAA+ L L+ + Sbjct: 912 WTPERAMIDAAEPLSTPLGATSGNALEDVERQHIASVLQQTNWRIEGANGAAKILNLQPS 971 Query: 676 TLLSRMKRLGIDKSA 690 TL SRM++LGI + A Sbjct: 972 TLRSRMQKLGIVRPA 986 Score = 97.2 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 63/355 (17%), Positives = 125/355 (35%), Gaps = 9/355 (2%) Query: 28 ASLCEALSQLVKRSALADNAAIVLWQAQTQRASYYASREKDTPIKYEDETVLAHGPVRSI 87 +L++ ++ A A ++ + S D P + + Sbjct: 156 DEFFRSLARYAAQALGARYAFAAETLSELESQSLAYWEGSDFGA-GFTYRFP-GTPCQRV 213 Query: 88 LSRPDTLHCSYEEFCETWPQLDAGGLYPKFGHYCLMPL-AAEGHIFGGCEFIRYDDRPWS 146 + + S +P+ D Y +P+ A G G + + Sbjct: 214 AAGHVCMTTSG--LAAKFPE-DVWLQQIGAESYVGVPMRNASGRTIGHIAVLHTQPMEPT 270 Query: 147 EKEFNRLQTFTQIVSVVTEQIQSRVVNNVDYELLCRERDNFRILVAITNAVLSRLDMDEL 206 E++ L+ F E+ Q+ + L R L+ IT A+ L D L Sbjct: 271 EEDIATLKIFAARGCAELERKQADDRLRQAHAELRRTHIETEALLNITRAIGHHLQRDVL 330 Query: 207 VSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQHPAHEQSEVDEAGTLTERVF 266 +A+ + D I L ++ + + + + + + G+ E V Sbjct: 331 FGALAECLQTAVPTDCFGIALP-VAGARIQAHILNQKNIRSEGAPPTLHEAKGSAAEWVM 389 Query: 267 KSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFT 326 K++E + + + Q+++ C+LPL++GD + G L ++ + Sbjct: 390 KNREWYVAATRREVSE-RFPKTSEMMQREQMESACVLPLVAGDRVRGALFFLAAGKESYA 448 Query: 327 TTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDEN-LALTEQLNNVDSEFGE 380 + Q+A VA+A+D+ L +E+ RL E L + L +Q V E E Sbjct: 449 ALQHAFMNQVASAVAVALDDCLVQEEMRRLGEELAAQKIARLEQQKEEVTHELEE 503 >UniRef50_A6EHB3 Sigma-54-dependent transcriptional regulator n=1 Tax=Pedobacter sp. BAL39 RepID=A6EHB3_9SPHI Length = 664 Score = 638 bits (1647), Expect = 0.0, Method: Composition-based stats. Identities = 213/684 (31%), Positives = 342/684 (50%), Gaps = 51/684 (7%) Query: 20 TLLQQPDLASLCEALSQLVKRSALADNAAIVLWQAQTQ--RASYYASREKDT--PIKYED 75 +L E L + + D A+VL+ + + R Y + + ++ Sbjct: 17 AFDHSFNLREFLEVLVRKLCPLFSIDCVALVLYDEKLEYIRNMYCSVPPVNGMRNVEVMT 76 Query: 76 ETVLAHGPVRSILSRPDTLHCSYEEFCETWPQ---LDAGGLYPKFGHYCLMPLAAEGHIF 132 +++ G I + S++E+ + + + + GL K+ C +PL I Sbjct: 77 KSLGLSGITAEIAGYQFPVLKSHDEWVDGYGENHCVSQQGLQYKYH--CYIPLEINNMIL 134 Query: 133 GGCEFIRYDDRPWSEKEFNRLQTFTQIVSVVTEQIQS--RVVNNVDYELLCRERD--NFR 188 G E + DD+ S++ + T +++ + + ++ ++ + + +R ++ Sbjct: 135 GTLE-LHNDDKHLSQEGMSFCCTLADLLAELVDSKLPALQMPAHLVTDNVEEDRGVPHYA 193 Query: 189 ILVAITNAVLSRLDMDELVSEVAKEIHYY-FDIDDISIVLRSHRKNKLNIYSTHYLDKQH 247 L+A++NA+L D +L V +++ + F D + I H Sbjct: 194 ALIALSNALLLVSDEVQLEEVVGRQLLQFSFIADHLLIYPVDHIAE-------------- 239 Query: 248 PAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMS 307 + + V + ++I + + L + + + M Sbjct: 240 -----------HAVFDNVISAGVPVIIPARDMRSVPVLSEWLVEAHDDVVVGTA----MY 284 Query: 308 GDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLAL 367 DT L L + + K + L L+ IA ++ +A++N QE+ Sbjct: 285 QDTALLGLLYLRLKNKEQSAPLLELIGAIAAQLTLALNNLRYRQELAAGTA------FFP 338 Query: 368 TEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSG 427 + ++ F EI+G S M V + VA S +TVLILGETG GKELIA AIH S Sbjct: 339 LTAQDRLEYAFPEIVGGSPQMQEVFNLMGQVAPSTATVLILGETGVGKELIAGAIHQASD 398 Query: 428 RNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPL 487 R R+MV++NCAA+PA L+ES+LFGHE+G+FTGA+ +R G+FELAD+S++FLDE+G++ L Sbjct: 399 RAERQMVRINCAAIPANLIESELFGHEKGSFTGATDRRTGKFELADQSTIFLDEIGELSL 458 Query: 488 ELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPI 547 +LQ KLLRVLQE+EFER+G + I DVR+IAATNR+L V FR DLYYRLNVFPI Sbjct: 459 DLQVKLLRVLQEKEFERIGGSGTISVDVRVIAATNRNLLDEVEAGRFRMDLYYRLNVFPI 518 Query: 548 HLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIER 607 LP LR+R DIPLLA F + + G+ I + + + WPGN+RELE++IER Sbjct: 519 SLPSLRDRRADIPLLANFFLERYKMKSGKKISGFSQKVMSAMMKYRWPGNIRELEHLIER 578 Query: 608 AVLLTRGNVL-QLSLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGA 666 V+LT G ++ L +P T + ++E I VL+ NG ++G GA Sbjct: 579 QVILTEGTLIRDLDIPAAHQVMATDGSGQTEIKTIAQNERDHIFSVLRLCNGKISGKNGA 638 Query: 667 AQRLGLKRTTLLSRMKRLGIDKSA 690 A+ LG+ TTL S++K+LG+ + Sbjct: 639 AKLLGVPATTLNSKIKKLGLSRQH 662 >UniRef50_Q1ZGP7 Formate hydrogen-lyase transcriptional activator n=1 Tax=Psychromonas sp. CNPT3 RepID=Q1ZGP7_9GAMM Length = 766 Score = 627 bits (1618), Expect = e-178, Method: Composition-based stats. Identities = 266/725 (36%), Positives = 391/725 (53%), Gaps = 59/725 (8%) Query: 21 LLQQPDLASLCEALSQLVKRSALADNAAIVLWQAQTQRASYYASREKDTPIKYEDETVLA 80 L +L L + L+ L + + ++++ A + + E + Sbjct: 48 LCTANNLQELVKKLNTLSAITESLQSVHLLIYHADKKNHILFYPEENKVNSLQLGRLEID 107 Query: 81 HGPVRSILSRPDTLHCSYEEFCETWPQLDAGGLYPKFGHYCLMPLAAEGHIFGGCEFIRY 140 P +L + + F + + + +PL+A G E + Sbjct: 108 PKPNGVLLVKKYQ-TYDKKTFTDKFNDYSHLKNFSNAHSIYHVPLSAFNRYIGKIEVVNI 166 Query: 141 DDRPWSEKEFNRLQTFTQIVSVVTEQIQSRVVNN----------------------VDYE 178 P S + L+ + +VS+V +I +N+ Sbjct: 167 --APLSASGISDLEQISTVVSLVLAKIFDGNLNHHYGFQDELLGYAKPLSVEENRADVDA 224 Query: 179 LLCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIY 238 L + +LV +T AV+ +++ + L + + + +F I+ ISI+ S L+ + Sbjct: 225 ALEGNSLHNHVLVEVTEAVIGQVNFEGLATVLFLHLQEHFGIEFISIMSFSSDSESLSCH 284 Query: 239 STHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTW-GNQI 297 + + + +S+ +A T+ E V +SK+ L ++ + L + D + +++ Sbjct: 285 EVNQGKEGKAQYIESQKPKAKTMEEHVIQSKKTLQLSRSDYPLLKHKFLHVDDHYMSHKL 344 Query: 298 QTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLK 357 + C+ PL+ +LGV+K EK F+ L+LL+QIA R+++A++ Q + Sbjct: 345 SSECVFPLLFRQQVLGVIKYGHRAEKYFSEERLDLLKQIAARISVAINYF---QNSSKFM 401 Query: 358 ERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKEL 417 + ++L ++ + FG II +S+AM V ++V MVA DSTVLILGETGTGKE+ Sbjct: 402 MKSTPKDLMSVDKTEQSKAMFGGIISQSKAMREVFQRVLMVADCDSTVLILGETGTGKEM 461 Query: 418 IARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSL 477 IA IHN S R++++MVKMNC+A+P+GL ESDLFGH +GAFTGA Q++GRFE A KSS Sbjct: 462 IANMIHNASNRSHKKMVKMNCSAVPSGLFESDLFGHVKGAFTGAVNQQVGRFEEAHKSSF 521 Query: 478 FLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSD 537 FLDE+GDMPL+LQPK+LR LQE E ER+G + II DVR+IAAT+ DL MV D FR D Sbjct: 522 FLDEIGDMPLQLQPKVLRALQEGEIERVGKHTIIPVDVRMIAATHCDLLSMVKDNSFRRD 581 Query: 538 LYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGN 597 LYYRLNVFPI +PPLRER EDIPLLAK FT ++++ R+I SI ETLR L ++ WPGN Sbjct: 582 LYYRLNVFPIRIPPLRERREDIPLLAKHFTQLFSKKMNRDIQSISPETLRILYSLPWPGN 641 Query: 598 VRELENVIERAVLLTRGNVLQLS-----------LPDIVLPEPET--------------- 631 VREL+NVIERAV++ +G VL L P + + T Sbjct: 642 VRELKNVIERAVIMNKGQVLHLPMSELKEYFPDIDPSPLCVQDGTKKEAGCFPDTVDLYG 701 Query: 632 ----PPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 P + V E + I++VLKETNG+VAGPKGAA RLGLKRTTLLSRM+RLGI Sbjct: 702 ENTIPKNVSAVKSVKSMEREQIIKVLKETNGIVAGPKGAAHRLGLKRTTLLSRMQRLGIT 761 Query: 688 KSALI 692 + LI Sbjct: 762 SNDLI 766 >UniRef50_C7PQF6 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PQF6_CHIPD Length = 1082 Score = 624 bits (1610), Expect = e-177, Method: Composition-based stats. Identities = 227/713 (31%), Positives = 363/713 (50%), Gaps = 38/713 (5%) Query: 3 YTPMSDLGQQGLFDITRTLLQQPDLASLCEALSQLVKRSALADNAAIVLWQ--------- 53 Y + + L I+ ++ D + L + ++++ + AIV + Sbjct: 376 YIQAREAENEMLLSISHSIASISDKSKLVPTIKKILQTRLNFSDIAIVQYNVAKGLYKVI 435 Query: 54 --AQTQRASYYASREKDTPIKYEDETVLAHGPVRSILSRPDTLHCSYEEFCETWPQLDAG 111 + + +D E L G +++ + S + Sbjct: 436 LEDCEKANQH-----QDFEGIAFREYSLQDGLHNRVMASDSAVLLSVAALQKVGGIHFDF 490 Query: 112 GLYPKFGHYCLMPLAAEGHIFGGCEFIRYDDRPWSEKEFNRLQTFTQIVSVVTEQIQSRV 171 + L +FGG + + +S + ++ F+ +S + + Sbjct: 491 LAEAGINEIAGVRLMHNNEVFGGMTLLAENINSFSADDMRLIERFSYHLSGLVANML--- 547 Query: 172 VNNVDYELLCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHR 231 E + + IL++ + + + L++ + + + F +DI++ + + Sbjct: 548 ----ANEAIQQREKEKEILLSFSADIARTRGAEALIAVMRQRLKSIFHFNDITVGIFNAE 603 Query: 232 KNKLNIYSTHYLD-----KQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYE 286 K + + + +E A + + + S + L + P Sbjct: 604 KTAFKVLVADVEERRTSHPEFKEIAFAEYPIADGIHDMLLHSDKPELFYIENLLMKNPGR 663 Query: 287 -RMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVD 345 + + I+ + + L++ + +G + + E F +L+LL+ I+++VA+AV Sbjct: 664 HPGIQFIFERGIKEIAGVKLVNQNEDIGFITMLSEERNSFRHRDLHLLKGISDQVAVAVA 723 Query: 346 NALA-------YQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMV 398 N LA +EI+ KE+L +E L L +++++V +IIG M V + V Sbjct: 724 NILADEKIGQQLKEINGYKEKLEEEKLYLQQEISSV-YTHTDIIGAGPEMQRVFHMLSQV 782 Query: 399 AQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAF 458 + + STVLILGETGTGKELIARAIHN S R N+ MVK+NCAA+PA L+ES+LFGHERG+F Sbjct: 783 SFAQSTVLILGETGTGKELIARAIHNGSPRKNKLMVKVNCAALPANLIESELFGHERGSF 842 Query: 459 TGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLI 518 TGA +RIG+FELA+ +LFLDE+G+MPL+LQ KLLR +QE+E ER+G I+TDVR+I Sbjct: 843 TGAIERRIGKFELANHGTLFLDEIGEMPLDLQVKLLRAIQEREIERIGGKSTIKTDVRII 902 Query: 519 AATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNI 578 AATNR+L+K VA+ FRSDLYYRLNVFPI LPPLR+R EDI LLA F + AR GR Sbjct: 903 AATNRNLQKEVAEGRFRSDLYYRLNVFPIVLPPLRDRKEDISLLAAHFIERFARSTGRKN 962 Query: 579 DSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVL-QLSLPDIVLPEPETPPAATV 637 + + ++ L+ WPGNVRELE+V+ER++LLT+GN++ ++ L E + Sbjct: 963 IKLSSTAMKQLTAYNWPGNVRELEHVLERSILLTQGNIIREIHLSSQPKSEAKVRQEEDF 1022 Query: 638 VALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSA 690 E E I+ VL + G + GP GAA+ LGL +TL R+++LGI K Sbjct: 1023 SRTLDEMERDYILGVLNKCKGKIFGPGGAAEILGLHVSTLNHRIRKLGIQKEH 1075 Score = 44.4 bits (104), Expect = 0.014, Method: Composition-based stats. Identities = 28/204 (13%), Positives = 67/204 (32%), Gaps = 6/204 (2%) Query: 165 EQIQSRVVNNVDYELLCRERDNF-RILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDI 223 + +R + V + R+L+++ + +L++ V + +F Sbjct: 4 SKSATRKIQKVASTVSVENDIELTRLLLSLAMDIARVRAKSDLMNLVKERFSSFFSFSHC 63 Query: 224 SIVLRSHRKNKLN--IYSTHYLDKQHPAHEQSEV---DEAGTLTERVFKSKEMLLINLHE 278 +I + S R + T L K+H + + E + +L + Sbjct: 64 TISVPSGRPQHYKAFMLDTSSLIKEHTQYHELVTADWPIGVEWMVAAIDKGEPFICHLAK 123 Query: 279 RDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAE 338 + + + L+ + ++GVL F +++ I+ Sbjct: 124 MKAAGELTDNMQIVYDAGVAETLNCGLIFENEVIGVLSFFSKTPDNFQLAIFPVVKAISS 183 Query: 339 RVAIAVDNALAYQEIHRLKERLVD 362 +++AV N +A EI + Sbjct: 184 HISLAVANIMARDEIEQKIREREA 207 >UniRef50_B0SC18 Transcriptional regulator n=7 Tax=Bacteria RepID=B0SC18_LEPBA Length = 705 Score = 619 bits (1598), Expect = e-176, Method: Composition-based stats. Identities = 202/716 (28%), Positives = 329/716 (45%), Gaps = 61/716 (8%) Query: 12 QGLFDITRTLLQQPDLASLCEALSQLVKRSALADNAAIVLWQAQTQRASYYASREKDTPI 71 Q + ++ + D L E + + ++ +++L + SR + + Sbjct: 10 QSIHEVATAMNSTQDPDGLLELILDRCIQICAVESGSLMLIDEKQSVLDAVTSRGMNQQL 69 Query: 72 KYEDETVLAHGPVRSILSRPDTLHCSYEEFCETWPQLDAGGLYPKFGHYCLMPLAAEGHI 131 E + + G S + + Q+ + + P+ E I Sbjct: 70 LRETKLKIGQGITGMAASTGKAKLVNDVSKDPDYIQV-----KEEIKSELVAPMIVEDDI 124 Query: 132 FGGCEFIRYDDRPWSEKEFNRLQTFTQIVSVVTEQIQSRVVNNVDYELLCRERDNFRILV 191 G ++ + + + + +Q L + L+ Sbjct: 125 IGVISLDSNRLNAFTPEMLEIVSVLANQAGQIFKNLQ-------TIRSLEQRTKIQATLI 177 Query: 192 AITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQHPAHE 251 I+ V S LD +E+ + + ++ SIVL + + L I + L + Sbjct: 178 EISKVVSSTLDQNEVFDSIMVTMEKSLRLEKGSIVLFNKEEALLRIVAASGLSPEEIEKG 237 Query: 252 QSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQ--TLCLLPLMSGD 309 + E +T +V++S E ++I + + +L P++S Sbjct: 238 TYQPGEG--ITGKVYESGEPIIIESVASHPDFLNRVGYLSHFKHDPHNVSLLCAPILSEQ 295 Query: 310 TMLGVLKLAQCEEKVFTTTNL-NLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALT 368 T LGV+ + K + + L+ +A ++ ++ +E + R EN+ L Sbjct: 296 TTLGVVNAFIVQNKHTDLKSFLDFLQVVASIISQSIKIQNLVEEAKKEISR---ENIQLK 352 Query: 369 EQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGR 428 +L +FG +IG++ +M + +++++VA S ++VLI GE+GTGKE+IA AIH S R Sbjct: 353 REL-KNKYKFGSLIGKAASMEKMFEKIQLVADSRASVLITGESGTGKEMIANAIHYNSSR 411 Query: 429 NNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLE 488 + VK+NCAA+P LLES+LFGH++G+FTGA + G+FELAD ++FLDE+G+M L Sbjct: 412 SENPFVKINCAAIPENLLESELFGHKKGSFTGAVTDKKGKFELADTGTIFLDEIGEMDLN 471 Query: 489 LQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIH 548 LQ KLLRVLQE+E E +GS K + DVR+IAATN +L+++VA+++FR+DL+YRLNV I+ Sbjct: 472 LQSKLLRVLQEREIEAIGSTKAKKVDVRIIAATNAELEQLVAEKKFRADLFYRLNVVKIN 531 Query: 549 LPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERA 608 PPLR+R EDIPLL F K + ++I I E R L WPGNVRELENVIERA Sbjct: 532 TPPLRDRVEDIPLLMNHFLEKYTKDNNKSIKGISREASRLLLKYRWPGNVRELENVIERA 591 Query: 609 VLLTRGNVLQLSLPDIVLPEPETPPAATVVA----------------------------- 639 V+L + +L +L E P TV Sbjct: 592 VVLAQDEILNEEDFSDILSNMEEMPDNTVEVSHSNHVESVSGAEPLDLGSGRLTSGQLDG 651 Query: 640 --------LEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 + E E +LI +K+ A+ LG+ R TL ++K L I+ Sbjct: 652 LDGRAMEIVVSEVESRLIQYAMKKFR---YTKTRVAKFLGINRNTLDKKIKELNIE 704 Score = 71.8 bits (175), Expect = 8e-11, Method: Composition-based stats. Identities = 24/172 (13%), Positives = 69/172 (40%), Gaps = 9/172 (5%) Query: 187 FRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQ 246 + + + A+ S D D L+ + ++ S++L +++ L+ ++ +++Q Sbjct: 9 IQSIHEVATAMNSTQDPDGLLELILDRCIQICAVESGSLMLIDEKQSVLDAVTSRGMNQQ 68 Query: 247 HPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLM 306 ++++ +T + + L+N +D +I++ + P++ Sbjct: 69 LL--RETKLKIGQGITGMAASTGKAKLVNDVSKDPDYI-------QVKEEIKSELVAPMI 119 Query: 307 SGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKE 358 D ++GV+ L FT L ++ +A + N + + + + Sbjct: 120 VEDDIIGVISLDSNRLNAFTPEMLEIVSVLANQAGQIFKNLQTIRSLEQRTK 171 >UniRef50_D2QLL9 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QLL9_9SPHI Length = 875 Score = 618 bits (1593), Expect = e-175, Method: Composition-based stats. Identities = 210/706 (29%), Positives = 340/706 (48%), Gaps = 45/706 (6%) Query: 15 FDITRTLLQQPDLASLCEALSQLVKRSALADNAAIVLWQAQTQRASYYASREKDTPI--- 71 + ++ D LC A++ + + + + + + D Sbjct: 175 IAVNNAIVTIQDRDQLCRAIADQINKLVPFSFLNLRIGLPDEVSFYWLMLAKTDVNTFER 234 Query: 72 ------------KYEDETVLAHGPVRSILSRPDTLHCSYEEFCETWPQLDAGGLYPKFGH 119 + + + P R + ++++ CE + + Sbjct: 235 VNLAMLLRGEVEEGLIQKLDREAPDRLGEEQGVFTGDAFDQLCERYITARSCRDNFGVRS 294 Query: 120 YCLMPLAAEGHIFGGCEFIRYDDRPWSEKEFNRLQTFTQIVSVVTEQIQSRVVNNVDYEL 179 L P+ + F +++K++ + +++ + + + + Sbjct: 295 LVLFPIQLKRKAFTTIILSSIRADGFTQKDYQAVNLIAPQIALALDNLLAYEEIEARRQT 354 Query: 180 LCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYS 239 E +AI NA + D ++ +VA I+ D +++ +L + Sbjct: 355 KTTE-------LAIVNAFQNGKDSHAIIPQVAAIINELMPFDLLAVYRI----GRLLESA 403 Query: 240 THYLDKQHPAHEQSEVDEAGTLTERVFKSK--------------EMLLINLHERDDLAPY 285 + Q + E + + + E + + D+ Sbjct: 404 AIDMAVQKQGGVFVAITEKDVVPQTLADQASWKQALADMETWLVEPAINVGQQFVDIQQR 463 Query: 286 ERMLFDTWGN-QIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAV 344 + +++ +P+ S + L LA FT +L L+ I+ +A+A+ Sbjct: 464 SVVSRFYAEALGLKSSMYVPIFSKGKPIAALILASKAAYAFTPKDLCTLQDISVELALAL 523 Query: 345 DNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDST 404 +N AY+ I L E L E L E++ F EIIG S +M +V + VA +D T Sbjct: 524 ENLSAYERIKVLSEHLEQEKTYLAEEI-KTSHNFEEIIGTSSSMQTVFNAIGQVAPTDYT 582 Query: 405 VLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQ 464 VLI+GETGTGKELIARA+H+LS R +R +VK+NCAA+PA L+ES+LFGHERG+FTGA+ + Sbjct: 583 VLIMGETGTGKELIARAVHSLSARRDRPVVKINCAALPAQLIESELFGHERGSFTGATEK 642 Query: 465 RIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRD 524 RIG+FELA+ +LFLDE+G++PLELQ KLLR +QE+E ER+G +I + R+IAATNR+ Sbjct: 643 RIGKFELANGGTLFLDEIGELPLELQAKLLRAIQEKEIERVGGKGVILINTRIIAATNRN 702 Query: 525 LKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAE 584 L++ VA FRSDLYYRLNVFPI +PPLRER EDI L F KI+++LG+ I +I Sbjct: 703 LQQEVAAGRFRSDLYYRLNVFPIVVPPLRERQEDILPLTMHFLQKISKKLGKPITNIANA 762 Query: 585 TLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETP---PAATVVALE 641 +L+ L WPGN+RELE+V+ER+ +L++ L L+ P P ++ V Sbjct: 763 SLQQLLQYPWPGNIRELEHVLERSSILSQSATLTLAEPLRAATTAFPPFVVQSSEEVKSI 822 Query: 642 GEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 + I+ L ++ + G GAA+ L +K TTL +RMK+L I Sbjct: 823 DDAMRLAILAALAKSGNRIRGTGGAAELLNIKPTTLEARMKKLNIS 868 >UniRef50_P12626 Nitrogen fixation protein anfA n=11 Tax=Bacteria RepID=ANFA_AZOVI Length = 533 Score = 613 bits (1582), Expect = e-174, Method: Composition-based stats. Identities = 180/515 (34%), Positives = 266/515 (51%), Gaps = 14/515 (2%) Query: 181 CRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYST 240 IL I+ + D+ + +S V + + + + L R + I+ + Sbjct: 25 ECRVKMLPILYKISQIITGNADLADALSIVLGVMQQHLKMQRGIVTLYDMRAETIFIHDS 84 Query: 241 HYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTL 300 L ++ V E +T +V ++ + ++ + + + Sbjct: 85 FGLTEEEKKRGIYAVGEG--ITGKVVETGKAIVARRLQEHPDFLGRTRVSRNGKAK-AAF 141 Query: 301 CLLPLMSGDTMLGVLKLAQCE-EKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKER 359 +P+M +LG + + ++ LL IA +A V+ L + I R+ R Sbjct: 142 FCVPIMRAQKVLGTIAAERVYMNPRLLKQDVELLTMIATMIAPLVELYL-IENIERV--R 198 Query: 360 LVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIA 419 L +EN L L + IIG S+ M V + + VA + +TVLILGE+G GKEL+A Sbjct: 199 LENENRRLKHALKE-RFKPSNIIGNSKPMQEVYELIHKVASTKATVLILGESGVGKELVA 257 Query: 420 RAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFL 479 AIH S +V NCA +P L ES+LFGHE+G+FTGA G FE AD ++FL Sbjct: 258 NAIHYNSPNAEAALVTSNCAPLPENLAESELFGHEKGSFTGALTMHKGCFEQADGGTIFL 317 Query: 480 DEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLY 539 DEVG++ +Q KL+RVLQ + FER+G +K ++ DVR+IAATNR+L +MV FR DLY Sbjct: 318 DEVGELSPTVQAKLVRVLQNRTFERVGGSKPVKVDVRIIAATNRNLVEMVEQGTFREDLY 377 Query: 540 YRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVR 599 YRLNVFPI +PPLRER D+ LA F +R G+N+ I L L + WPGNVR Sbjct: 378 YRLNVFPITVPPLRERGSDVIALADHFVSAFSRENGKNVKRISTPALNMLMSYHWPGNVR 437 Query: 600 ELENVIERAVLLTRGNVLQ-LSLPDIVLPEPETPPA--ATVVALEGEDEYQLIVRVLKET 656 ELENV+ERAV+L+ +V+ +LP + E+ A T+ E ++IV LK + Sbjct: 438 ELENVMERAVILSDDDVIHSYNLPPSLQTSKESGTAFGLTLEEKIKAVECEMIVEALKNS 497 Query: 657 NGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSAL 691 +G + AA+ LGL R L RM+R GI + Sbjct: 498 SGHI---GEAAKELGLARRMLGVRMERYGISYKSF 529 >UniRef50_C8QWL5 Transcriptional regulator, NifA, Fis Family n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QWL5_9DELT Length = 539 Score = 612 bits (1580), Expect = e-173, Method: Composition-based stats. Identities = 173/527 (32%), Positives = 275/527 (52%), Gaps = 14/527 (2%) Query: 169 SRVVNNVDYELLCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLR 228 + N E L R+ + L IT + S D+ ++++ + +++ ++ + Sbjct: 15 NGAGNGEATEPLPRDYADLACLYEITRELASSADLRVCLAKILAILSRQKGLNNGAVTII 74 Query: 229 SHRKNKLNIYSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERM 288 + ++ H + + + E +T RV S +++ + L Sbjct: 75 NPLTGQIETEVAHGITVEARKKGTYRIGEG--ITGRVVASGAPIVVPRISEEPLFLDRTS 132 Query: 289 LFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQC-EEKVFTTTNLNLLRQIAERVAIAVDNA 347 + G ++ + +P+ G +G L + + E +L L ++ VA V Sbjct: 133 ARRSRGEEL-SFICVPIRRGPDTIGALSVDREYREGEEFEQDLRFLTILSGLVAQTVKRV 191 Query: 348 LAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLI 407 +++ ++RL EN L +L+ I+ S M VL+ + VA S++TVL+ Sbjct: 192 QL---VNQEQQRLEQENSQLRRELSE-KYRVSSILSNSSRMQEVLEMIHRVAASNATVLL 247 Query: 408 LGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIG 467 GE+GTGK ++ARA+H+ S R + +NC+A+P LLES+LFGHERGAFTGA R G Sbjct: 248 RGESGTGKSMVARAVHHNSKRAAGPFITVNCSALPETLLESELFGHERGAFTGAHETRKG 307 Query: 468 RFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKK 527 RFELA+ +LFLDE+G++ +Q KLL V+Q++EF+R+G ++ ++ DVRLI ATN+DL+K Sbjct: 308 RFELAEGGTLFLDEIGELSTAVQVKLLSVVQDREFQRVGGSRPLKCDVRLITATNKDLEK 367 Query: 528 MVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLR 587 VA+ FR DLYYRLNVFPI+LPPLRER DI LLA+ F K A +NI I + Sbjct: 368 AVAEGTFREDLYYRLNVFPIYLPPLRERRTDILLLAEFFLEKFASENDKNIRRISTPAID 427 Query: 588 TLSNMEWPGNVRELENVIERAVLLTRGNVL-QLSLPDIVLPEPE--TPPAATVVALEGED 644 L+ WPGNVREL+N +ERAVL+ + + LP + ++ A Sbjct: 428 LLTQYHWPGNVRELQNCLERAVLICDEDTIKSYHLPPTLQSSDSLREVSPSSFTAAVESF 487 Query: 645 EYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSAL 691 E +LI+ LK+T+G AA L + ++K+ I+ Sbjct: 488 ERELIIDALKKTDG---NQTRAAALLETSLRIINYKIKKYAIEPRRY 531 >UniRef50_B3Q676 Transcriptional regulator, NifA subfamily, Fis Family n=9 Tax=Bacteria RepID=B3Q676_RHOPT Length = 561 Score = 610 bits (1574), Expect = e-173, Method: Composition-based stats. Identities = 180/516 (34%), Positives = 261/516 (50%), Gaps = 14/516 (2%) Query: 181 CRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYST 240 + +IL I + D+ LVS + + + ++L + + I+ + Sbjct: 46 ECRVNVLQILFRINQVLTQNADLATLVSIILDGMRQQMRMQRGVMMLYDRHSDAIFIHDS 105 Query: 241 HYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDT-WGNQIQT 299 L ++ E +T +V ++ + ++I + Sbjct: 106 FGLTEEERGRGIYAPGEG--ITGKVVETGKPIIIPRVIDSPDFLDRTRAHNKGRKQDKLA 163 Query: 300 LCLLPLMSGDTMLGVLKLAQCE-EKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKE 358 +P++ +LG + + + + LL +A +A AV+ L + + ++ Sbjct: 164 FFCVPIVLAQKVLGTICAERVYMNQRLLNQDAELLAMVASLIAPAVELYL-IENVDKV-- 220 Query: 359 RLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELI 418 RL EN L +L IIG S+ M V V VA + +TVL+LGE+G GKEL+ Sbjct: 221 RLETENRRLKSELKQ-RFRPANIIGNSKPMQEVYAMVHKVASTKATVLLLGESGVGKELV 279 Query: 419 ARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLF 478 A A+H S + +K NCAA+P L ES+LFGHERGAFT A A G FE A ++F Sbjct: 280 ASALHYNSPVADGPFIKANCAALPEALAESELFGHERGAFTSAIATHKGYFEQASGGTIF 339 Query: 479 LDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDL 538 LDEVG++ L Q KLLRVLQE+ FER+G K ++ DVR+IAATNR+L +MVA+ FR DL Sbjct: 340 LDEVGELSLPTQAKLLRVLQERTFERVGGAKPVKVDVRIIAATNRNLAEMVAEGTFREDL 399 Query: 539 YYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNV 598 +YRLNVFPI +PPLR+R D+ LA F + +G+ I I + L + WPGNV Sbjct: 400 FYRLNVFPITIPPLRDRGSDVITLADHFVTTYSAEIGKPIKRISTPAINMLMSYHWPGNV 459 Query: 599 RELENVIERAVLLTRGNVLQ-LSLPDIVLPEPETPPA--ATVVALEGEDEYQLIVRVLKE 655 RELENVIER+V+L V+ LP + ET T+ EY++IV LK Sbjct: 460 RELENVIERSVILAEEGVIHGYDLPPSLQTPTETGTGFSGTLEDRVTAVEYEMIVEALKA 519 Query: 656 TNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSAL 691 +NG V AA LGL R L RM+R G+ Sbjct: 520 SNGNV---GQAATTLGLTRRMLGLRMERHGLTYKTF 552 >UniRef50_P27713 Nif-specific regulatory protein n=3 Tax=Burkholderiales RepID=NIFA_HERSE Length = 542 Score = 610 bits (1574), Expect = e-173, Method: Composition-based stats. Identities = 172/545 (31%), Positives = 271/545 (49%), Gaps = 44/545 (8%) Query: 181 CRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYST 240 + I+ + S LD+ + + EV + + + + + L +L + S Sbjct: 8 RSVNLELVTIYEISKILGSSLDLSKTLREVLNVLSAHLETKRVLLSLMQ-DSGELQLVSA 66 Query: 241 HYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTL 300 L + + V E +T ++F+++ +++ ++ L + ++ + Sbjct: 67 IGLSYEEFQSGRYRVGEG--ITGKIFQTETPIVVRDLAQEPLFLARTSPRQSQDGEVISF 124 Query: 301 CLLPLMSGDTMLGVLKLAQCE--EKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKE 358 +P+ + MLGVL + + + LL +A + V Y+ + ++ Sbjct: 125 VGVPIKAAREMLGVLCVFRDGQSPSRSVDHEVRLLTMVANLIGQTV---RLYRSVAAERQ 181 Query: 359 RLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELI 418 +L +E L+ QL + +IG S+AM V QV A S ST+L+ GE+GTGKE+I Sbjct: 182 QLQEEKRQLSRQLQG-KYKLDNVIGISKAMQEVFAQVHQSAPSRSTMLLRGESGTGKEVI 240 Query: 419 ARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLF 478 ARAIH LS R + +K+NCAA+ LLES+LFGHE+GAFTGA +R GRFELA +LF Sbjct: 241 ARAIHYLSPRKDGPFIKVNCAALSETLLESELFGHEKGAFTGAQGERKGRFELAHGGTLF 300 Query: 479 LDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDL 538 LDE+G++ Q KLLRVLQE+EFER+G ++ I+ DVRL+ ATNRDL+K VA EFR+DL Sbjct: 301 LDEIGEISPAFQAKLLRVLQEREFERVGGSRSIKVDVRLVTATNRDLEKAVAKGEFRADL 360 Query: 539 YYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNV 598 YYR+NV I +PPLRER EDIP L + F K R + ++ + ++ + N WPGNV Sbjct: 361 YYRINVVSIFIPPLRERREDIPYLVEHFLEKFRVENQRAMVAMSPQAMKVMMNCYWPGNV 420 Query: 599 RELENVIERAVLLTRGNVLQ---------------LSLPDIVLPEPETP----------- 632 RELEN +ER + RG+++ L P P P Sbjct: 421 RELENCVERTATMMRGDLITEVHFSCQQNKCLTKVLHEPGQQQPVVVVPLERISAPYGAI 480 Query: 633 ------PAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 A E + ++ +++ V AA+ L + + +++ I Sbjct: 481 FAEWDGQGQATGAAPPTSERERLIWAMEQCGWV---QAKAARALNISPRQMGYALQKFNI 537 Query: 687 DKSAL 691 + Sbjct: 538 EVKKF 542 >UniRef50_A5G4X7 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Geobacter uraniireducens Rf4 RepID=A5G4X7_GEOUR Length = 726 Score = 610 bits (1574), Expect = e-173, Method: Composition-based stats. Identities = 229/694 (32%), Positives = 341/694 (49%), Gaps = 46/694 (6%) Query: 16 DITRTLLQQPDLASL-CEALSQLVKRSALADNAAIVL--WQAQTQRASYYASREKDTPIK 72 ++R + DL AL + + + D +++ RAS+ E Sbjct: 45 SMSRIITVSADLVDREIAALLRQMLTTCGFDRCGLMMLTQDKTEVRASHACHGE-GIAAV 103 Query: 73 YEDETVLAHGPVRSILSRPDTLH---CSYEEFCETWPQLDAGGLYP---KFGHYCLMPLA 126 E T+ P + + LH S+ E P +A Y +P+ Sbjct: 104 PETYTLRDLFP----WTGENLLHGNIVSFSSLAELPPLAEADRRNYAALGVQSYLAIPIY 159 Query: 127 AEGHIFGGCEFI--RYDDRP---WSEKEFNRLQTFTQIVSVVTEQIQSRVVNNVDYELLC 181 A G EF + R WS++ + L+ F ++ + + L Sbjct: 160 AG----GSVEFFIDAHHVRARHIWSKESISLLRLFGEVCANAL---GGGHDTRNEEVRLQ 212 Query: 182 RERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTH 241 ER + V N +D + + +++ F D ++ S K + + Sbjct: 213 FERFVSDLSVKFINVTADEVDRE--IIAALEQVREMFQFDGFGLISLSPDKGEAIVSHAC 270 Query: 242 YLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGN-QIQTL 300 Y + + E+ ++ T+ EM+ N R+D+ + +W +++ Sbjct: 271 YGEGIERSPEKIDISLRFPWTKERLLRGEMIHFN--SREDVPEDAAVDRQSWQAMKVKAN 328 Query: 301 CLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERV--------AIAVDNALAYQE 352 +P++ ++ ++ L L ++ + + + E Sbjct: 329 FSIPILVAGSVAYIIAAHDVRATRCLDEGLLLRLRLLGEIFANALFRCKSEAEFRNSCTE 388 Query: 353 IHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETG 412 I RLKE+L E L ++ +IIG+S A+ VL+ VE VA +DSTVLI GETG Sbjct: 389 IQRLKEKLQLEAEYLQTEIICSHCN-EQIIGQSAALDKVLRLVEQVASTDSTVLICGETG 447 Query: 413 TGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELA 472 TGKEL+ARAI LS R N+ +VK+NCA++PA L+ES+LFG E+GA+TGA ++ GRFE+A Sbjct: 448 TGKELVARAIQELSLRRNKPIVKVNCASLPAALVESELFGREKGAYTGALTRQAGRFEVA 507 Query: 473 DKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADR 532 D +++FLDE+ +M ELQ KLLRVLQE +FERLGS K I DVR+IAATNR+L + V Sbjct: 508 DGATIFLDEISEMSPELQAKLLRVLQEGQFERLGSTKTIHVDVRVIAATNRNLAEEVKKG 567 Query: 533 EFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNM 592 FR DLYYRLNVF I +PPLRER EDIPLLA AF + ++G+ I+ I + L N Sbjct: 568 TFREDLYYRLNVFQIVVPPLRERAEDIPLLAWAFVHEFNEKMGKKINRIAKSDMNALQNY 627 Query: 593 EWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGEDEYQLIVRV 652 WPGNVREL NVIE V+++ GN L + LP+ E P L E E Q I V Sbjct: 628 HWPGNVRELRNVIEYGVIVSTGNGLHVRLPEGSGEEIARP------LLMDEVERQHITGV 681 Query: 653 LKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 L+ T + G GAA+ LG+ +TL SRM++LGI Sbjct: 682 LQRTGWRIKGENGAARILGMNPSTLYSRMQKLGI 715 >UniRef50_B3QSR6 Transcriptional regulator, NifA, Fis Family n=2 Tax=Bacteria RepID=B3QSR6_CHLT3 Length = 557 Score = 608 bits (1569), Expect = e-172, Method: Composition-based stats. Identities = 182/557 (32%), Positives = 293/557 (52%), Gaps = 41/557 (7%) Query: 171 VVNNVDYELLCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSH 230 N + + + + +L I+ A+++ D+++++ V + + + I + + Sbjct: 2 ETVNQNIKTNEEQPNELTLLAEISRALINEEDINKILRLVLLIMSEHMGMLRGVITIFNR 61 Query: 231 RKNKLNIYSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLF 290 ++ I + L + A + ++ E + +V ++ + +++ ++ L + Sbjct: 62 DSGEIVIKESFGLSPEEQARGRYKLGEG--IIGQVVETGKPVVVPSIAKEPLFLDKTRSR 119 Query: 291 DTWGNQIQTLCLLPLMSGDTMLGVLKLAQC----------------------EEKVFTTT 328 + +P+ +G ++G L + E + Sbjct: 120 EKDEKNDLCFVCVPIRAGQEVIGTLSADRKVSSKNPRVALTQTQGGKQTRGCGENGMFNS 179 Query: 329 NLNLLRQIAERVAIAVDNALAYQE--IHRLKERLV-------DENLALTEQLNNVD--SE 377 ++NLL IA ++ AV E ++ K L N + + N+++ + Sbjct: 180 DVNLLSIIAAMISQAVRLRQVAHEENLYHWKSNLQISAPEGKSHNSDVFDNPNSIEVGEQ 239 Query: 378 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMN 437 IIG +++M V K ++ +A +++TVLILGE+G GKEL+A AIH S R +K N Sbjct: 240 PANIIGNAKSMRVVFKMIDKIAPTNATVLILGESGVGKELVANAIHYKSQRAASPFIKFN 299 Query: 438 CAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVL 497 CAA+P ++ES+LFGHERGAFTGASA R GRFELA+ ++FLDEVG++ L +Q KLLR+L Sbjct: 300 CAALPESIVESELFGHERGAFTGASATRKGRFELANTGTIFLDEVGELSLSIQAKLLRIL 359 Query: 498 QEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPE 557 QE+EFER+G NK I+ DVR+IAATNR+L++ + + +FR DL+YRLN+FP+ +PPLRER Sbjct: 360 QEKEFERVGGNKTIKADVRIIAATNRNLEEEIQEGKFREDLFYRLNIFPVTVPPLRERKS 419 Query: 558 DIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVL 617 DI LLA F K + G+ + I + L WPGNVRELEN +ERAV+L+ V+ Sbjct: 420 DILLLADYFVEKYNQMNGKGVRRISTTAIDMLMRYHWPGNVRELENCVERAVILSDDGVI 479 Query: 618 Q-LSLPDIVLPEPE--TPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKR 674 LP + TP A + EY+LIV LK T G ++ AA LGL Sbjct: 480 HGYHLPPTLQTAESSGTPCAGPLQQRLDALEYELIVEALKNTKGNMS---KAAMELGLTD 536 Query: 675 TTLLSRMKRLGIDKSAL 691 + R+K+ ID + Sbjct: 537 RVMGLRVKKFDIDFRSF 553 >UniRef50_A8ZZQ7 Sigma-54 factor interaction domain-containing protein n=4 Tax=Proteobacteria RepID=A8ZZQ7_DESOH Length = 684 Score = 608 bits (1568), Expect = e-172, Method: Composition-based stats. Identities = 190/688 (27%), Positives = 315/688 (45%), Gaps = 34/688 (4%) Query: 18 TRTLLQQP-----DLASLCEALSQLVKRSALADNAAIVLWQAQTQRASYYASREKDTPIK 72 + TLLQ+ D L E L+++ + + W + + T I Sbjct: 5 SDTLLQRVQQRIFDEGDLQEGLNEVYHCVSAVMPVGKMSWLQFHYDLNMLRVIAQATEIG 64 Query: 73 YEDETVLAHGPVRSILSRPDTLHCSY---EEFCETWPQLDAGGL----YPKFGHYCLMPL 125 E + P I L CS E + P+ D G K + + L Sbjct: 65 GEKTNFTYNLPGELI-----ALLCSRDIPEIYLMNHPEKDPLGKEICNRAKLFDWSSLFL 119 Query: 126 AAEGHI--FGGCEFIRYDDRPWSEKEFNRLQTFTQIV-SVVTEQIQSRVVNNVDYELLCR 182 + H +G + ++E L + + V+ I + +L Sbjct: 120 NFQNHTGTYGAIMIMTDRKNRYTEAHGRLLSGLKKPLQRVMDALILDNETRSPHPKLKEP 179 Query: 183 ERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHY 242 +D +T + LD+ VS+ + + + D + + R + + Y Sbjct: 180 VKDKNEFFRQVTRRLCGHLDLQAGVSQCLQYLSRFMPADALFVRQREPEFQSERVLAESY 239 Query: 243 LDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCL 302 + ++ I + R + + ++ +G++I Sbjct: 240 GFFHQQTGTLIPLPIP-------ADTRRTPGIRIINRPEDSSALKLYMPIFGSEI-CCIS 291 Query: 303 LPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVD 362 +PL+ + +G + +T ++ L + + +A+ N + ++E+ RLK + + Sbjct: 292 MPLIHKERPIGAAVVGLEGRARYTEEHMQLFALLHDPFVLALSNNIRHREVIRLKNLVEE 351 Query: 363 ENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAI 422 E L E+L+ IIG S + V++ +VA DS VL+ GETG GKE+IA I Sbjct: 352 EKKDLAEELHCTA--PDTIIGGSLGLEKVMENARLVAGQDSPVLLTGETGVGKEMIANFI 409 Query: 423 HNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEV 482 H S R + ++K+NC A+P L++S+LFGHE+GAFTGA+ Q++GRFE A+ ++FLDE+ Sbjct: 410 HWQSSRKDGPLIKVNCGAIPDTLVDSELFGHEKGAFTGATRQKLGRFERANGGTIFLDEI 469 Query: 483 GDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRL 542 ++PL Q ++LRVL + ER+G + I D+R+IAAT+R+L++ V FR DL++RL Sbjct: 470 AELPLPAQVRMLRVLHNKIIERVGGTESIPVDIRIIAATHRNLEERVKAGRFREDLWFRL 529 Query: 543 NVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGR-NIDSIPAETLRTLSNMEWPGNVREL 601 NVFPI +PPLR R D+P L+ F K +R L + + + L+ WPGNVREL Sbjct: 530 NVFPIRIPPLRSRTMDVPALSDHFIEKKSRELKIHPTPPLSPDAMARLTAYSWPGNVREL 589 Query: 602 ENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVA---LEGEDEYQLIVRVLKETNG 658 ENVIER ++L G L E + + + +VL +NG Sbjct: 590 ENVIERELILNTGGPLTFQNLSPTPTHEEPAGHDMKTEDILSLDDLFVRHVKKVLVLSNG 649 Query: 659 VVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 + GP GAA+ + +K TL +RMK+LGI Sbjct: 650 KINGPGGAAEMMKIKPNTLRNRMKKLGI 677 >UniRef50_A6EHC4 Sigma-54-dependent transcriptional regulator n=1 Tax=Pedobacter sp. BAL39 RepID=A6EHC4_9SPHI Length = 550 Score = 607 bits (1566), Expect = e-172, Method: Composition-based stats. Identities = 203/549 (36%), Positives = 316/549 (57%), Gaps = 15/549 (2%) Query: 157 TQIVSVVTEQIQSRVVNNVDYELLCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHY 216 ++ Q Q+R++ ++ ++ +E+ +L++++NA+ + + +L + +++ Sbjct: 4 AYQAGGLSAQDQNRMLLEINERIIRKEQ-ESAVLLSLSNAIATIRNKYDLFEVIDQKLKT 62 Query: 217 YFDIDDISIVLRSHRKNKLNIYSTHY-----LDKQHPAHEQSEVDEAGTLTERVFKSKEM 271 FD D+ I L + K + + + P L E + S Sbjct: 63 LFDFDEFVICLINEDKKTHSPFLYNQREDFRNAAGIPPASTKRYSLDDGLCEAMLASAHP 122 Query: 272 LLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLN 331 ++ + E L I+ + + + D G L + + + Sbjct: 123 IVFEVEEVMQWPDPPIWLGFWQNKGIREMIGMKIFDRDECSGFFYLYAKKSNAVSNQYYS 182 Query: 332 LLRQIAERVAIAVDNALA-------YQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGR 384 LL I+ ++++AV N A Q+I+ K++L DE L EQ+N E++G+ Sbjct: 183 LLHSISLQISVAVSNIRANEKIEEQLQQINTYKQQLEDEKSYLQEQIN-TRYHHSEMVGQ 241 Query: 385 SEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 444 S A+ V +E VA SDSTVLILGETGTGKEL+AR+IHNLS R ++ M+K+NCAA+PA Sbjct: 242 SSAIRQVFDLIEQVAASDSTVLILGETGTGKELVARSIHNLSPRKDKLMIKVNCAALPAN 301 Query: 445 LLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFER 504 L+ES+LFGHE+G+FTGAS +RIG+FELA +LFLDE+G++ ++Q KLLR LQE+E ER Sbjct: 302 LVESELFGHEKGSFTGASERRIGKFELAHNGTLFLDEIGELSPDIQVKLLRALQEKEIER 361 Query: 505 LGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAK 564 +G +I+T+VR+IAATNR+L K V + FRSDLYYRLNVFPI +PPLR R EDI L+ Sbjct: 362 IGGKGVIKTNVRIIAATNRNLMKEVEEGNFRSDLYYRLNVFPITIPPLRNRKEDIQALSA 421 Query: 565 AFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVL-QLSLPD 623 F +A++ GR + + L+TL WPGN+RELE++IER++LL+RGN++ ++ LP Sbjct: 422 HFIQHLAKKTGRQVKGMTKGVLKTLQEYPWPGNIRELEHLIERSILLSRGNIINEVHLPK 481 Query: 624 IVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKR 683 + E T + E+E I+ +LK G ++G GAA+ L + TTL S++K+ Sbjct: 482 VEHMEDLTSNKEIRIKTIFENERDHILNILKLCKGKISGNGGAAELLSIPATTLNSKIKK 541 Query: 684 LGIDKSALI 692 I K +I Sbjct: 542 FNIKKEHVI 550 >UniRef50_B6WRE4 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WRE4_9DELT Length = 521 Score = 602 bits (1554), Expect = e-171, Method: Composition-based stats. Identities = 190/528 (35%), Positives = 265/528 (50%), Gaps = 26/528 (4%) Query: 180 LCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYS 239 + R+L ++ + D+ + + + + I L S ++ I Sbjct: 1 MRETVSELRLLFDLSQVIDHSRDISHSLEATLSLMAQHLHMMRGMITLVSPHTGEIRIEV 60 Query: 240 THYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQT 299 H L+ + E +T RV +S + ++++ + D + I Sbjct: 61 AHGLNPAEQRRGHYALGEG--VTGRVIQSGQPMVVSNVSASPIFLNRTRSRDLQKDTI-A 117 Query: 300 LCLLPLMSGDTMLGVLKLAQ-CEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKE 358 +P+ D +LG L + + + V + +L IA +A A A A Q + + Sbjct: 118 FICVPIKFEDEVLGALSVDRVFADAVTLEEDERILTIIASMIAHA---ARARQNVMDERV 174 Query: 359 RLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELI 418 ++EN+ L L + +G S+AM V +Q+ VA S +TVL+ GE+GTGKEL Sbjct: 175 AAIEENMRLRNAL-SAPLRPHGFVGNSDAMRLVYEQISQVAPSSTTVLLYGESGTGKELA 233 Query: 419 ARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLF 478 A AIH+ R+ + +NCAA+P L+ES+LFGHE+GAFTGAS R GRFELAD +LF Sbjct: 234 AHAIHSAGKRSKGPFISLNCAALPENLIESELFGHEKGAFTGASGIRKGRFELADGGTLF 293 Query: 479 LDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDL 538 LDEVG++ L Q KLLRVLQE+ FERLG + + DVR+I ATNRDL +MV + FR DL Sbjct: 294 LDEVGELSLLTQAKLLRVLQERCFERLGGTESLSVDVRIITATNRDLARMVEEGTFRRDL 353 Query: 539 YYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNV 598 YYRLNVFPIH+PPLRER DI LA F K A GR+ I + L WPGN+ Sbjct: 354 YYRLNVFPIHMPPLRERQNDIQPLAAYFVDKYAAANGRSGIRISLAVMDMLQRYTWPGNI 413 Query: 599 RELENVIERAVLLT--RGNVLQLSLPDIVL-------------PEPETPPAATVVALEGE 643 RELENV+ERAVLL G +L LP + P + T+ E Sbjct: 414 RELENVMERAVLLVGQDGLILPQHLPRELHSTHCPFGPAAHKGPVEPYAASGTLQDRLDE 473 Query: 644 DEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSAL 691 E I L G + AAQ LGL + RMK+ GI+ Sbjct: 474 LERACITDALARHKGHM---GHAAQALGLTERVMALRMKKHGINYKDF 518 >UniRef50_Q1NW39 Nif-specific regulatory protein n=2 Tax=Deltaproteobacteria RepID=Q1NW39_9DELT Length = 541 Score = 600 bits (1547), Expect = e-170, Method: Composition-based stats. Identities = 179/537 (33%), Positives = 272/537 (50%), Gaps = 34/537 (6%) Query: 177 YELLCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLN 236 + L I+ + S LD+ + ++E +H ++ ++VL +L Sbjct: 5 TIRPDTAHLELQALYQISQLIGSALDISKTLNETLGVLHETLRMERATLVLEECDSGRLT 64 Query: 237 IYSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQ 296 I +++ L A +E + R+F S ++ R+ L Sbjct: 65 IVASYGLSPAEIARGIYRPEEG--VIGRIFASAYPFVVPDVHREPLFLNRTRARTNLPKG 122 Query: 297 IQTLCLLPLMSGDTMLGVLKLAQ-CEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHR 355 + +P+M + +GVL + + ++ ++ L +A + ++ + + Sbjct: 123 EISFIGVPVMLAENPVGVLSVDRLFGPEISFEEDIRFLTVVATMIGQFLNLQRTFASSQQ 182 Query: 356 LKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGK 415 + L +EN L +L + IIG+ + + V + VA S +T L+LGE+GTGK Sbjct: 183 V---LREENSQLRRKLQD-RFNRYNIIGQCKRIQEVYDYIAKVAPSRATALLLGESGTGK 238 Query: 416 ELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKS 475 EL+ARAIH R +K+NCAA+P LLES+L GHE+GAFTGA Q+ GRFELAD Sbjct: 239 ELVARAIHQAGPRAGEPFIKLNCAALPENLLESELLGHEKGAFTGAVGQKKGRFELADGG 298 Query: 476 SLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFR 535 +LFLDE+G++PL LQ KLLRVLQE+ FERLG ++ I DVR+IAATNR L+ V + FR Sbjct: 299 TLFLDEIGELPLALQAKLLRVLQERTFERLGGSRTIAVDVRIIAATNRSLEAGVEEGVFR 358 Query: 536 SDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWP 595 +DLYYRLNV P+ LPPLRER EDIPLL F + R R + A +R L+ WP Sbjct: 359 ADLYYRLNVVPVVLPPLRERREDIPLLLDHFLRESNRHNRRRVK-FAAAVIRRLNEYSWP 417 Query: 596 GNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETP-----------PAATVVAL---- 640 GNVREL+N++ER V++ G V+ L L +P+ PAA + A Sbjct: 418 GNVRELQNLVERLVIMVDGEVVNLDDLPAYLADPDPANRRCPRGFADQPAAVLPAPSWVD 477 Query: 641 --------EGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKS 689 E E + ++ L+ V AA+ LG+ + R+++ I+ Sbjct: 478 QGMAAGRSLWEMEKEEVLAALRRHGWV---QTRAARDLGITPRQMGYRIRKYAIEIP 531 >UniRef50_Q2LXW8 Nif-specific regulatory protein with sigma 54 interaction domain n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LXW8_SYNAS Length = 513 Score = 599 bits (1546), Expect = e-169, Method: Composition-based stats. Identities = 181/515 (35%), Positives = 268/515 (52%), Gaps = 22/515 (4%) Query: 182 RERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTH 241 + L AI + ++ + + V +E++ + I L ++ + H Sbjct: 4 HNYEELAALHAIARTLAQPGELRDQLERVLQEMNQRVGMQRGMISLLDRESGEVWLDVAH 63 Query: 242 YLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLC 301 +D Q +T +V ++ + + ++ Sbjct: 64 GVDIQGME---VSYQPGEGITGKVAQTGRPMAVANLGQETHFLDRTGARRFLNRSELAFL 120 Query: 302 LLPLMSGDTMLGVLKLAQCEEKVF-TTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERL 360 +P++ + ++GVL + +V L +L I+E +A +V L Sbjct: 121 CVPIIYDNRVVGVLSADKAARQVEDLDRELAMLSSISELIAKSVH-----------IRAL 169 Query: 361 VDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIAR 420 +EN L L EIIG S M V + VA S++TVLI GETGTGKEL+AR Sbjct: 170 EEENRRLRHMLGRSTVPDSEIIGHSRVMQEVFGLIAQVADSNTTVLINGETGTGKELVAR 229 Query: 421 AIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLD 480 AIH+ S R ++++NCAAMP L+ES+LFGHE+GAFTGA R GRFE A ++FLD Sbjct: 230 AIHDRSSRCKGPLIQVNCAAMPDTLIESELFGHEKGAFTGALHARRGRFEEAHGGTIFLD 289 Query: 481 EVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYY 540 EVG++ Q KLLRV+QE++F+ LG+++++ DVR+IAATNR+L++ VA FR+DLYY Sbjct: 290 EVGELSAAAQAKLLRVIQEKKFQPLGASRVVSVDVRIIAATNRNLEEDVAVGHFRADLYY 349 Query: 541 RLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRE 600 RLNVFPI+LPPLRER DI LLA F K + +G+++ I L + WPGNVRE Sbjct: 350 RLNVFPIYLPPLRERGSDIILLADYFVLKYNKIMGKSVKRISNAVLEAFLSHSWPGNVRE 409 Query: 601 LENVIERAVLLTRGNVL-QLSLPDIVL---PEPETPPAATVVALEGEDEYQLIVRVLKET 656 LEN IERAVLL G+ + L LP + E E + A+ E +IV LKE+ Sbjct: 410 LENCIERAVLLATGDSIETLHLPPSLQIRSREGEKKESGKFNAMIESQERAMIVDALKES 469 Query: 657 NGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSAL 691 +G AA+ LG + + ++++ GID Sbjct: 470 HG---NQSQAARILGTTKRIIQYKIQKFGIDPRRF 501 >UniRef50_Q3AR86 DNA-binding protein Fis / transcriptional regulator, Fis family n=11 Tax=Chlorobiaceae RepID=Q3AR86_CHLCH Length = 549 Score = 598 bits (1543), Expect = e-169, Method: Composition-based stats. Identities = 168/547 (30%), Positives = 276/547 (50%), Gaps = 41/547 (7%) Query: 181 CRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYST 240 + + +L ++ + D+++++ V + + I + + ++ I + Sbjct: 6 QNDYGSISLLAEVSRTITHEEDINKVLRLVLFIMSENMHMQRGMITILNRSTGEIVINES 65 Query: 241 HYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTL 300 L ++ + + E + V K+ + +++ + + L + Sbjct: 66 FGLTEEERERGRYHIGEG--VIGHVVKTGKAVIVPSIQDEPLFLDRTGSRAQAKKEELCF 123 Query: 301 CLLPLMSGDTMLGVLKLAQCEEKVFTTTN--------------------LNLLRQIAERV 340 +P+ +G ++G L + E V + ++ L IA + Sbjct: 124 ICIPIKAGSEIIGTLSADRHVEPVTADEHRRKTRQTDDRDERIDKLQFYVDQLSIIAAMI 183 Query: 341 AIAVD-NALAYQEIHRLKERL------------VDENLALTEQLNNVDSEFGEIIGRSEA 387 + AV LAY+ + + L E+ + IIG ++ Sbjct: 184 SQAVRLKQLAYEAGSKNVQDLSNLPPFAASIPPRSEDRQVNAIPPPSPDRPANIIGNTKP 243 Query: 388 MYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLE 447 M S+ ++ +A++ +T L+LGE+G GKEL+A AIH S R + +K NCAA+P ++E Sbjct: 244 MVSLYSMIDKIAKTSATTLVLGESGVGKELVASAIHFKSRRAEKPFIKFNCAALPENIVE 303 Query: 448 SDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGS 507 S+LFGHE+GAFTGA A R GRFE+A+ ++FLDEVG++ L +Q KLLR+LQE+EFER+G Sbjct: 304 SELFGHEKGAFTGALATRHGRFEMANNGTIFLDEVGELSLSVQAKLLRILQEKEFERVGG 363 Query: 508 NKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFT 567 +K I+ DVR+IAATNR+L++++ +FR DL+YRLN+FPI +PPLRER DI LLA F Sbjct: 364 SKTIKVDVRVIAATNRNLEELIRQGQFREDLFYRLNIFPITVPPLRERKTDILLLADYFV 423 Query: 568 FKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQ-LSLPDIVL 626 K + + + I + L WPGNVREL+N IERAV+L+ NV+ LP + Sbjct: 424 EKYNKANQKGVRRISTTAIDMLMRYHWPGNVRELQNCIERAVILSEDNVIHGYHLPPTLQ 483 Query: 627 PEPE--TPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRL 684 TP ++ E ++I+ LK T G ++ AA +LGL + R+K+ Sbjct: 484 TAESSGTPYTGSLQQKLDAIEKEMIIEALKRTQGNMS---RAAMQLGLSERIMGLRIKKF 540 Query: 685 GIDKSAL 691 ID Sbjct: 541 NIDYRKF 547 >UniRef50_A7HFP7 Transcriptional regulator, NifA subfamily, Fis Family n=2 Tax=Myxococcaceae RepID=A7HFP7_ANADF Length = 674 Score = 598 bits (1542), Expect = e-169, Method: Composition-based stats. Identities = 242/570 (42%), Positives = 343/570 (60%), Gaps = 18/570 (3%) Query: 130 HIFGGCEFIRYDDRPWSEKEFNRLQTFTQIVSVVTEQIQSRVVNNVDYELLCRERDNFRI 189 G ++ + +R +V +TE+++ R + L ER+ R+ Sbjct: 112 RKGGSVMWVSNSVSLVPPRGGSRRILILGLVEDITERMRLR-------DELDAERNRLRL 164 Query: 190 LVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQHPA 249 L+ + +++ LD+ E+ +A + D I + L +L + + D + Sbjct: 165 LLDVNELLVAHLDLREMFQALASSLRRVTDCHFIGLALPDAATGELRQHIVDHPDGKGAI 224 Query: 250 HEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYE-------RMLFDTWGNQIQTLCL 302 E + G+ + + F++ +L+N E + P R + + + Sbjct: 225 TEGMVLPLHGSASGKAFRTGAPVLLNDPEANRQDPDLYGTPEGARFYRTVLEEGVPSGYV 284 Query: 303 LPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVD 362 LPL+ +LGVL+L + + F + + ++A +++IAV NAL Y+E+ KERL Sbjct: 285 LPLVHRGEVLGVLQLKKYADARFKEREIEFMSKVAGQLSIAVANALEYREVKESKERLDR 344 Query: 363 ENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAI 422 E + L E++ + +F EIIG S + VL Q++ VA +DSTVLILGETGTGKELIARAI Sbjct: 345 ERVYLKEEIRSAH-DFEEIIGVSRTLKQVLGQIDTVAVTDSTVLILGETGTGKELIARAI 403 Query: 423 HNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEV 482 HN S R +R VK+NC+A+P GLLES+LFGHERGAFTGA+A RIGRFE AD+ +LFLDE+ Sbjct: 404 HNRSRRRDRPFVKVNCSAIPTGLLESELFGHERGAFTGATAPRIGRFEAADQGTLFLDEI 463 Query: 483 GDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRL 542 GD+P++LQPKLLRVLQE+EFERLG+++ + DVR++AATNR L MV + FR DLYYRL Sbjct: 464 GDLPVDLQPKLLRVLQEREFERLGASRTRRVDVRVVAATNRGLATMVGEGRFREDLYYRL 523 Query: 543 NVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELE 602 NVFPI LPPLRER DIPLL + F ARR+G+ ID IP ++R L WPGNVREL+ Sbjct: 524 NVFPITLPPLRERAGDIPLLVRHFVGVYARRMGKQIDHIPDASMRALVGYHWPGNVRELQ 583 Query: 603 NVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVA---LEGEDEYQLIVRVLKETNGV 659 NVIERAV+LT G VL+L+L + E P A E E + I+ L+E V Sbjct: 584 NVIERAVILTPGAVLELALAERAAGAREDRPDAAAPNGHRTLQEVEREHILGALQEAKWV 643 Query: 660 VAGPKGAAQRLGLKRTTLLSRMKRLGIDKS 689 + GP GAA RLGL+RT+L+ RM++LGI + Sbjct: 644 IGGPNGAAARLGLRRTSLMYRMEKLGIARP 673 Score = 75.3 bits (184), Expect = 8e-12, Method: Composition-based stats. Identities = 51/348 (14%), Positives = 100/348 (28%), Gaps = 23/348 (6%) Query: 14 LFDITRTLLQQPDLASLCEALSQLVKRSALADNAAIVLWQAQTQRASYYASR-EKDTPIK 72 L D+ L+ DL + +AL+ ++R + L A T + Sbjct: 165 LLDVNELLVAHLDLREMFQALASSLRRVTDCHFIGLALPDAATGELRQHIVDHPDGKGAI 224 Query: 73 YEDETVLAHGPVRSILSRP-DTLHCSYEEFCETWPQLDAGG---------LYPKFGHYCL 122 E + HG R + + E P L L + Sbjct: 225 TEGMVLPLHGSASGKAFRTGAPVLLNDPEANRQDPDLYGTPEGARFYRTVLEEGVPSGYV 284 Query: 123 MPLAAEGHIFGGCEFIRYDDRPWSEKEFNRLQTFTQIVSVVTEQIQSRVVNNVDYELLCR 182 +PL G + G + +Y D + E+E + +S+ E L R Sbjct: 285 LPLVHRGEVLGVLQLKKYADARFKEREIEFMSKVAGQLSIAVANALEYREVKESKERLDR 344 Query: 183 ERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHY 242 ER + + + + + + +V +I D ++L K I + Sbjct: 345 ERVYLKEEIRSAHDFEEIIGVSRTLKQVLGQIDTVAVTDSTVLILGETGTGKELIARAIH 404 Query: 243 LDKQHPAHEQSEVDEAGTLTERVFK------------SKEMLLINLHERDDLAPYERMLF 290 + +V+ + T + + + D + + Sbjct: 405 NRSRRRDRPFVKVNCSAIPTGLLESELFGHERGAFTGATAPRIGRFEAADQGTLFLDEIG 464 Query: 291 DTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAE 338 D + L + LG + + + +V TN L + E Sbjct: 465 DLPVDLQPKLLRVLQEREFERLGASRTRRVDVRVVAATNRGLATMVGE 512 >UniRef50_A4CKT3 Transcriptional regulator, NifA subfamily, Fis Family protein n=1 Tax=Robiginitalea biformata HTCC2501 RepID=A4CKT3_9FLAO Length = 791 Score = 598 bits (1542), Expect = e-169, Method: Composition-based stats. Identities = 193/610 (31%), Positives = 322/610 (52%), Gaps = 32/610 (5%) Query: 100 EFCETWPQLDAGGLYPKFGHYCLMPLAAEGHIFGGCEFIRYDDRPWSEKEFNRLQTFTQI 159 E E++ ++D L + L G G I ++++ N I Sbjct: 195 EERESFLKIDREVLNSGVENVNEETLTVRG---GDTRIISTKKSRFTDEAGNHF--LIGI 249 Query: 160 VSVVTEQIQSRVVNNVDYELLCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFD 219 + +TE+ ++ ++D L + D+ E + K + Sbjct: 250 IRDITERKRAEQALEDRARRSEIKKDAILKLAGMAQD-----DLQETFRRITKLAAQTLE 304 Query: 220 IDDISIVLRSHRKNKLNIYSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHER 279 ++ +SI ++ N++ + + ++ ++ + ++ +L+ + Sbjct: 305 LERVSIWKFTNSGNEILCEALYIENEGQHRRGDRLTRADCPNYFKLLEQQKSVLVPN-AQ 363 Query: 280 DDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKV--FTTTNLNLLRQIA 337 +D A + N I++L + + S G+L + +T +L +A Sbjct: 364 EDPATADFGPGYLKPNGIKSLMDVFVYSAHQPYGILCFEHVGPGIRSWTAEDLEFASSMA 423 Query: 338 ERVAIAVDN-----------------ALAYQEIHRLKERLVDENLALTEQLNNVDSEFGE 380 V++ V++ + A +E+ L+ RL EN+ L +L ++ + E Sbjct: 424 NVVSLMVESNERKKAEEQIRQANLELSKANKELDTLRNRLEQENMYLRNEL-DLAFNYQE 482 Query: 381 IIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAA 440 ++ S+A+ VL +VE VA +++TVL+ GE+GTGKEL+ARAIHN+S R+ + M+K+NCAA Sbjct: 483 MVYSSQAISQVLTEVEQVAATNATVLLQGESGTGKELLARAIHNISPRSGKPMIKVNCAA 542 Query: 441 MPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQ 500 +P LLES+LFGH++GAFTGA + ++G+FELAD +LFLDE+G++PLE+QPKLLR LQE Sbjct: 543 IPGELLESELFGHKKGAFTGAVSNKVGKFELADGGTLFLDEIGELPLEMQPKLLRFLQEG 602 Query: 501 EFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIP 560 E E +G ++ + DVR+IAATNR LK+ V +FR DLY+R+NVFPI +PPLRER EDIP Sbjct: 603 EIEVVGGTEVRKLDVRIIAATNRYLKEEVEKGDFREDLYFRINVFPIEVPPLRERKEDIP 662 Query: 561 LLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLS 620 +L + F K R+ G+NI + E + L EWPGN+RELEN++ERA +++RG L + Sbjct: 663 ILVEHFMDKFNRKYGKNISFVTEEAMSQLKQYEWPGNIRELENLLERATIVSRGETLIIP 722 Query: 621 LPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSR 680 + + P + I+ VL + + G GAA+ L ++ +TL R Sbjct: 723 GFES-QSQKSKMPLRNNNLSLTTVQRNHILHVLDMCDWKITGQGGAAELLDMRPSTLRDR 781 Query: 681 MKRLGIDKSA 690 M++LGI++ Sbjct: 782 MQKLGIERPG 791 >UniRef50_A3ER00 Transcriptional regulator, NifA, Fis Family n=3 Tax=Leptospirillum RepID=A3ER00_9BACT Length = 553 Score = 597 bits (1541), Expect = e-169, Method: Composition-based stats. Identities = 182/533 (34%), Positives = 267/533 (50%), Gaps = 39/533 (7%) Query: 186 NFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDK 245 AI+ + S D+D + + + + + SI+L + ++L H L + Sbjct: 10 ELTAFFAISRELASSPDLDGALKRILEIMDEKLGLHRSSILLLENDSDELRTEIAHGLSE 69 Query: 246 QHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQI-QTLCLLP 304 + E +T V K+ + +++ R+ ++ +P Sbjct: 70 EEIRKG--RFKEGEGITGAVLKTGDPIVVPDISREPRFLNRTGSRSERASRGKLAFLAVP 127 Query: 305 LMSGDTMLGVLKLAQCEEKV--FTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVD 362 L +GVL E L +L I+ +A AV + ++ +++L + Sbjct: 128 LTFQARKVGVLSADCTIEPGSGNLDEELRVLTTISSIIAQAV---ILRKQFVEERKKLEE 184 Query: 363 ENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAI 422 L L L + IGRS M + + V +VA+S +TVLI+GE+GTGKE++A+AI Sbjct: 185 RALRLEHHLKD-RYSIEGWIGRSRIMQQISESVHLVAKSRATVLIMGESGTGKEVVAKAI 243 Query: 423 HNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEV 482 H S RN R V++NCAA+P LLES+LFGHE+GAFTGA R G+FE A + +LFLDEV Sbjct: 244 HFNSPRNRRPFVQINCAAIPESLLESELFGHEKGAFTGAHVSRPGKFEQAHEGTLFLDEV 303 Query: 483 GDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRL 542 G++ +Q KLLRVLQE+ ER+G K I DVR+IAATNR+L++ + +FR DLYYRL Sbjct: 304 GEISPAVQVKLLRVLQERVVERVGGTKTIPVDVRIIAATNRNLEEAIRKNQFREDLYYRL 363 Query: 543 NVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELE 602 NV PI+LPPLR+R EDIPLL F + + GR+ +I E + L +WPGNVRELE Sbjct: 364 NVVPIYLPPLRQRKEDIPLLVNHFLGRFNQENGRS-MTISPEAISALIEHDWPGNVRELE 422 Query: 603 NVIERAVLLTRGNVL-------QLSLPDIVLPEPETPPAAT------------------- 636 N +ER V++T+ + + L+L LP Sbjct: 423 NTMERLVVMTQADSIDITDVRRTLALFPSTLPHRREVEEKPASRDSGKENGSSLKGESLL 482 Query: 637 VVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKS 689 + E E I+ VL T + AA LG+ L RM + GID S Sbjct: 483 LPEAVSELERAKILDVLDRTGWI---KTRAAALLGITPRQLGYRMMKYGIDPS 532 Score = 45.2 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 33/384 (8%), Positives = 107/384 (27%), Gaps = 18/384 (4%) Query: 13 GLFDITRTLLQQPDLASLCEALSQLVKRSALADNAAIVLWQAQTQRASYYASREKDTPIK 72 F I+R L PDL + + +++ ++I+L + + + Sbjct: 13 AFFAISRELASSPDLDGALKRILEIMDEKLGLHRSSILLLENDSDELRTEIAHGLSEEEI 72 Query: 73 YEDETVLAHGPVRSILSRPDTLHCSYEEFCETWPQ---LDAGGLYPKFGHYCLMPLAAEG 129 + G ++L D + + + + +PL + Sbjct: 73 RKGRFKEGEGITGAVLKTGDPIVVPDISREPRFLNRTGSRSERASRGKLAFLAVPLTFQA 132 Query: 130 HIFGGCEFIRYDDRPWS--EKEFNRLQTFTQIV--SVVTEQIQSRVVNNVDYELLCRERD 185 G + ++E L T + I+ +V+ + ++ L E Sbjct: 133 RKVGVLSADCTIEPGSGNLDEELRVLTTISSIIAQAVILRKQFVEERKKLEERALRLEH- 191 Query: 186 NFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDK 245 + + +I + M ++ V ++++ + + Sbjct: 192 HLKDRYSIEGWIGRSRIMQQISESVHLVAKS-----RATVLIMGESGTGKEVVAKAIHFN 246 Query: 246 QHPAHEQSEVDEAGTLTERVFKS-----KEMLLINLHERDDLAPYERMLFDTWGNQIQTL 300 + E + +S ++ H + + +++ + Sbjct: 247 SPRNRRPFVQINCAAIPESLLESELFGHEKGAFTGAHVSRPGKFEQAHEGTLFLDEVGEI 306 Query: 301 CLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERL 360 + +L + + ++ ++ + A+ ++++ + Sbjct: 307 SPAVQVKLLRVLQERVVERVGGTKTIPVDVRIIAATNRNLEEAIRKNQFREDLYYRLNVV 366 Query: 361 VDENLALTEQLNNVDSEFGEIIGR 384 L ++ ++ +GR Sbjct: 367 PIYLPPLRQRKEDIPLLVNHFLGR 390 >UniRef50_B5JMU1 Sigma-54 interaction domain family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JMU1_9BACT Length = 539 Score = 593 bits (1530), Expect = e-168, Method: Composition-based stats. Identities = 193/526 (36%), Positives = 280/526 (53%), Gaps = 14/526 (2%) Query: 171 VVNNVDYELLCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSH 230 + N + CR +L +I+ + LD+ ++V + + + ++ +I + + Sbjct: 21 ELLNRATGVSCRSVQELGLLFSISQTLEKSLDLGDIVRPALRRMQGFIGLERGTISILNR 80 Query: 231 RKNKLNIYSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHE--RDDLAPYERM 288 + L + P +D + ER +S++ ++I E + Sbjct: 81 DTGGFLLAEAIGLPRGLPPANY--LDMIRPILERTVESRDPVVITDLAVWARKQGVEEDV 138 Query: 289 LFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNAL 348 L + +PL + +G L + + ++L +L IA VA A Sbjct: 139 LESLRLADGVGMVSVPLKFDEEAIGTLSIERANTNFGWESDLRILGMIASIVAQAARVRR 198 Query: 349 AYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLIL 408 E + L EN L E++ + IIG S M SV +E VA S +TVLI Sbjct: 199 DAAE---QIQSLRAENERLQEEIAHG-FRPENIIGSSSTMRSVYYHIEQVANSATTVLIR 254 Query: 409 GETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGR 468 GE+GTGKEL+A+A+H S R N+ VK NCAA+P ++ES+LFGHE+GAFTGA A R GR Sbjct: 255 GESGTGKELVAKALHEKSSRRNKPFVKFNCAALPDSIIESELFGHEKGAFTGALAMRKGR 314 Query: 469 FELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKM 528 FE A+ ++FLDE+GD+ L Q KLLRVLQE+EFER+GS + + DVR+IAAT+R+L++M Sbjct: 315 FESANGGTIFLDEIGDISLSTQVKLLRVLQEREFERVGSQETRRVDVRVIAATSRNLEEM 374 Query: 529 VADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRT 588 + FR DLYYRLNVFPI++PPLRER DI +LA F K A+R+GR I + + Sbjct: 375 MEAGTFREDLYYRLNVFPIYMPPLRERKCDILMLADHFIEKFAKRMGRKPIRISSAAIDM 434 Query: 589 LSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLP---EPETPPAATVVALEGEDE 645 L + W GNVRELEN IERAVLL +G ++ L E+ AT+ E Sbjct: 435 LVSYHWAGNVRELENCIERAVLLAKGQSIKAHHLPPTLQKKSRAESSEVATLEDAIQALE 494 Query: 646 YQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSAL 691 ++IV LKET + A++RLGL R+K+ GID S Sbjct: 495 REMIVDALKETG---SNLAEASRRLGLTERKAGLRVKKYGIDVSRF 537 Score = 42.1 bits (98), Expect = 0.071, Method: Composition-based stats. Identities = 30/246 (12%), Positives = 68/246 (27%), Gaps = 19/246 (7%) Query: 14 LFDITRTLLQQPDLASLCEALSQLVKRSALADNAAIVLWQAQTQRASYYASREKDTPIKY 73 LF I++TL + DL + + ++ + I + T + + Sbjct: 40 LFSISQTLEKSLDLGDIVRPALRRMQGFIGLERGTISILNRDTGGFLLAEAIGLPRGLPP 99 Query: 74 EDETVLAHGPVRSILSRPDTLHCSYEEFCETWP-----QLDAGGLYPKFGHYCLMPLAAE 128 + + + + D + + L++ L G +PL + Sbjct: 100 ANYLDMIRPILERTVESRDPVVITDLAVWARKQGVEEDVLESLRLADGVG-MVSVPLKFD 158 Query: 129 GHIFGGCEFIRYDDRPWSEKEFNRLQTFTQIVSVVTEQIQSRVVNNVDYELLCRERDNFR 188 G R + E + L IV+ V E + R Sbjct: 159 EEAIGTLSIERANTNFGWESDLRILGMIASIVAQAA------RVRRDAAEQIQSLRAENE 212 Query: 189 ILVAITNAVLSRLDMDELV--SEVAKEIHYYFD--IDDISIVLRSHRKNKLNIYSTHYLD 244 L + + ++ S + ++Y+ + + + VL L Sbjct: 213 RLQE---EIAHGFRPENIIGSSSTMRSVYYHIEQVANSATTVLIRGESGTGKELVAKALH 269 Query: 245 KQHPAH 250 ++ Sbjct: 270 EKSSRR 275 >UniRef50_A0LFR7 Transcriptional regulator, NifA subfamily, Fis Family n=7 Tax=Deltaproteobacteria RepID=A0LFR7_SYNFM Length = 508 Score = 593 bits (1529), Expect = e-168, Method: Composition-based stats. Identities = 181/512 (35%), Positives = 262/512 (51%), Gaps = 22/512 (4%) Query: 185 DNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLD 244 + R L I V ++ + + + + ++ + + + + + +D Sbjct: 8 EELRTLHEIARVVSRSAELKDQLQQTLDILSSRLGMERGMVSVLDLQTGEAWLDVARGVD 67 Query: 245 KQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLP 304 + +T +V +S + I + L + + +P Sbjct: 68 VE---RGTIRYRPGEGITGKVAQSGRPMGIANLGDEALFLDRTGARRSLNREELAFLCVP 124 Query: 305 LMSGDTMLGVLKLAQCEEKVF-TTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDE 363 + +GVL + +V + +L +AE + V + +E Sbjct: 125 IFYQGRSVGVLSADKLARRVEDLDKEVEILSAVAELLGKVVHF-----------RAVEEE 173 Query: 364 NLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIH 423 N L L IIGRS+ + VL+ ++ VA +++TVLI GETGTGKEL+ARAIH Sbjct: 174 NSRLRRMLAEARRPTTNIIGRSKVIQEVLRAIDQVADTNTTVLISGETGTGKELVARAIH 233 Query: 424 NLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVG 483 + S R +V++NCAAMP LLES+LFGHE+GAFTGA +R GRFE A ++FLDEVG Sbjct: 234 DNSRRAKGPLVQVNCAAMPDTLLESELFGHEKGAFTGAVTRRRGRFEEAQGGTIFLDEVG 293 Query: 484 DMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLN 543 ++ Q KLLRVLQE+EF+ LGS++ ++ DVR+I A+N+DL+K VA FRSDLYYRLN Sbjct: 294 ELSPIAQAKLLRVLQEREFQPLGSSRTVKVDVRVITASNKDLEKEVALGTFRSDLYYRLN 353 Query: 544 VFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELEN 603 VFPI LPPLRER DI LLA F K AR L +++ I + L WPGNVRELEN Sbjct: 354 VFPIFLPPLRERGPDILLLADYFVLKYARELDKDVKRITTSAIDMLMCYHWPGNVRELEN 413 Query: 604 VIERAVLLTRGNVLQL-SLPDIVLPEP---ETPPAATVVALEGEDEYQLIVRVLKETNGV 659 IERAVLL GN + LP + +P + + AL E LI LK+ G Sbjct: 414 CIERAVLLAGGNAVDSWHLPPTLQMKPVGMQNVSRGKLEALVSAFERDLITDALKDVRG- 472 Query: 660 VAGPKGAAQRLGLKRTTLLSRMKRLGIDKSAL 691 AA+ LG + + ++++ GID Sbjct: 473 --NQSQAARLLGTTKRIVQYKVEKYGIDPRRF 502 >UniRef50_B3U4Q6 Nif-specific regulatory protein n=3 Tax=Bacteria RepID=B3U4Q6_9BACT Length = 517 Score = 590 bits (1522), Expect = e-167, Method: Composition-based stats. Identities = 191/513 (37%), Positives = 302/513 (58%), Gaps = 4/513 (0%) Query: 180 LCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYS 239 + R NF L+ +TNA+ S+ D+D L +A +I D I L + + Y+ Sbjct: 1 MQRATLNFETLLEVTNALNSQRDIDSLWRVIADQIRKVIPWDRAGITLYESQTDSFRFYA 60 Query: 240 THYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQT 299 S + G+ V ++ + + +++ + +R + Sbjct: 61 VITNMATPALAHDSVIPREGSAVGWVHDNRRLHIREDLQKEQVFLEDRYYVQEGLGR--- 117 Query: 300 LCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKER 359 + +PL+ D LG L + + + L+Q+A ++A A+D+ LAY++I +L +R Sbjct: 118 MINMPLLVRDHCLGTLNIGSVQTGHLDQDDCKFLQQVATQIAYAIDHVLAYEQIQQLSDR 177 Query: 360 LVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIA 419 L EN L E++ ++G S + V+ ++ VA +D+TVL+LGETGTGKE++A Sbjct: 178 LRRENEYLAEEVKASR-NLRLVVGTSSSFRKVVDLLKAVAPTDTTVLLLGETGTGKEVLA 236 Query: 420 RAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFL 479 +A+H+LS R ++ +++NCAA+P+GL+ES+LFGHERGAFTGA +R GRFELA +LFL Sbjct: 237 QALHDLSLRCHKPFIRVNCAALPSGLIESELFGHERGAFTGAQLRRAGRFELAHTGTLFL 296 Query: 480 DEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLY 539 DE+G+MPLE Q KLLRVLQ+ +R+G + + DVRL+AATN DL+ V FR+DL+ Sbjct: 297 DEIGEMPLETQAKLLRVLQDGMVDRIGGTQPVAVDVRLVAATNADLQAAVRQGTFRADLF 356 Query: 540 YRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVR 599 YRL++FPI LPPLR+R EDI LLA+ F I +L R + +++ L WPGNVR Sbjct: 357 YRLHIFPIALPPLRDRREDIHLLAQHFLALIGGKLKRAHLAFDPQSMARLLTYNWPGNVR 416 Query: 600 ELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGV 659 EL+NVIERAV+L+ + + + + + + P++++ G+ E I+ VL++T Sbjct: 417 ELQNVIERAVILSGSSQVTVDEMLLPVVQAVHSPSSSLPVSLGDLERYHIIEVLEQTKWR 476 Query: 660 VAGPKGAAQRLGLKRTTLLSRMKRLGIDKSALI 692 + G +GAA LGL TL SR+++LG+ + + I Sbjct: 477 IYGEQGAAHLLGLNPETLRSRLRKLGLRRPSSI 509 Score = 150 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 52/347 (14%), Positives = 102/347 (29%), Gaps = 5/347 (1%) Query: 12 QGLFDITRTLLQQPDLASLCEALSQLVKRSALADNAAIVLWQAQTQRASYYAS-REKDTP 70 + L ++T L Q D+ SL ++ +++ D A I L+++QT +YA TP Sbjct: 9 ETLLEVTNALNSQRDIDSLWRVIADQIRKVIPWDRAGITLYESQTDSFRFYAVITNMATP 68 Query: 71 IKYEDETVLAHGPVRSILSRPDTLHCSYEEFCETWPQLDAGGLYPKFGHYCLMPLAAEGH 130 D + G + LH + E D + G MPL H Sbjct: 69 ALAHDSVIPREGSAVGWVHDNRRLHIREDLQKEQVFLEDRYYVQEGLGRMINMPLLVRDH 128 Query: 131 IFGGCEFIRYDDRPWSEKEFNRLQTFTQIVSVVTEQIQSRVVNNVDYELLCRERDNFRIL 190 G + + LQ ++ + + + + L RE + Sbjct: 129 CLGTLNIGSVQTGHLDQDDCKFLQQVATQIAYAIDHVLAYEQIQQLSDRLRRENEYLAEE 188 Query: 191 VAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQHPAH 250 V + + + +V + D ++L K + + Sbjct: 189 VKASRNLRLVVGTSSSFRKVVDLLKAVAPTDTTVLLLGETGTGKEVLAQALHDLSLRCHK 248 Query: 251 EQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCL-LPLMSGD 309 V+ A + + L R G +PL + Sbjct: 249 PFIRVNCAALPSGLIESELFGHERGAFTGAQLRRAGRFELAHTGTLFLDEIGEMPLETQA 308 Query: 310 TMLGVLK---LAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEI 353 +L VL+ + + ++ L+ + AV ++ Sbjct: 309 KLLRVLQDGMVDRIGGTQPVAVDVRLVAATNADLQAAVRQGTFRADL 355 >UniRef50_C6W352 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Dyadobacter fermentans DSM 18053 RepID=C6W352_DYAFD Length = 693 Score = 589 bits (1518), Expect = e-166, Method: Composition-based stats. Identities = 218/698 (31%), Positives = 337/698 (48%), Gaps = 42/698 (6%) Query: 10 GQQGLFDITRTLLQQPDLASLCEALSQLVKRSALADNAAIVLWQAQTQRASYYASREKDT 69 + L D + + L +++ +++ I S Y +T Sbjct: 19 EKSFLLDFSNDMTAVRSREDLAIVVNKALRKLNPDGGYVIRKINEDGATMSAYLY---NT 75 Query: 70 PIKYEDETVLAH----------GPVRSILSRPDTLHCSYEEFCETWPQLD--AGGLYPKF 117 D +L G IL L + + L F Sbjct: 76 GASAFDPALLEQVLAEKYPINDGLQNRILDSAVPLLFNVRIELQRGYNLSYLDLWENMGF 135 Query: 118 GHYCLMPLAAEGHIFGGCEFIRYDDRPWSEKEFNRLQTFTQIVSVVTEQIQSRVVNNVDY 177 + L G + + I+ + QI + N + Sbjct: 136 KTMVGIALRNGNTNIGLLW-------------LSIDEINIPILQGICSQIAIAMGNIMAN 182 Query: 178 ELLCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNI 237 E + R + +++ ++ + +L +K + F+ + L + L Sbjct: 183 EDIFRRQAEQELMLGFSSDITGVKTKSDLEIVTSKTLERLFNTRISVLYLLDTDQVTLRP 242 Query: 238 YSTHYLDKQHPA----HEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTW 293 Y Q ++ + VF+S + +L+ + + A ++ Sbjct: 243 YLYDRQFFQETEVAENEAFYSLNINEEHVKLVFESSQPVLL-DIDENLEAKCLKLSIQRE 301 Query: 294 GNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEI 353 + + L G+ LG++ + + L+ I +++ AV N LA ++I Sbjct: 302 LSGFNRVYASALRLGEQKLGMVWMLGDQVSGPI------LQGICAQISTAVSNVLANEQI 355 Query: 354 HRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGT 413 RL+++L DEN L +QLN +F EI+G EAM V + + +VA+S++TVL+LGETGT Sbjct: 356 LRLQKQLEDENHYLKQQLNK---DFEEIVGGGEAMQQVYRLISLVAESNATVLLLGETGT 412 Query: 414 GKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELAD 473 GKELIA+A+H+ S R ++ M+K+NCAAMPA L+ES+LFGHERGAFTGA +RIG+FELA+ Sbjct: 413 GKELIAKAVHHTSARKDKLMIKVNCAAMPASLIESELFGHERGAFTGAVERRIGKFELAN 472 Query: 474 KSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADRE 533 S+LFLDEVG+MP+E Q KLLRVLQE+E ER+G I+ +VR+IAATNRDL+ V Sbjct: 473 NSTLFLDEVGEMPMETQVKLLRVLQEKEMERVGGKTTIKLNVRIIAATNRDLEAEVKAGR 532 Query: 534 FRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNME 593 FRSDLYYRLNVFPI+LPPLR+R EDI LA F K ++ +G+ + A LR L Sbjct: 533 FRSDLYYRLNVFPINLPPLRDRREDIESLAGFFLAKFSKSIGKKTVKLSANALRQLQAYL 592 Query: 594 WPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGEDEYQLIVRVL 653 WPGNVRELE++IER+V+L +++ + E I++VL Sbjct: 593 WPGNVRELEHLIERSVILATDPMIREFFLPQATGATTDEHTMQSDLTLEQVERMHIIQVL 652 Query: 654 KETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSAL 691 + G ++G GAA+ LG+ T+ S+M++LGI K+ Sbjct: 653 RRCGGKISGIGGAAEILGIPGNTIHSKMRKLGITKAEY 690 >UniRef50_B8FJT8 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=B8FJT8_DESAA Length = 464 Score = 588 bits (1516), Expect = e-166, Method: Composition-based stats. Identities = 180/453 (39%), Positives = 246/453 (54%), Gaps = 24/453 (5%) Query: 255 VDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGV 314 VD+ + + + H D A L + + + T +P M G +L Sbjct: 13 VDDDPGVLATLTEVLSDAGYRTHTATDGAEAVAELDKQFFDVVVTDLNMPGMDGMGVLKH 72 Query: 315 LKLAQCEEKVFTTTNLNLLRQIAERVAIA----VDNALAYQEIHRLK------ERLVDEN 364 L+ + + T +R E + + + + + E+ +RL EN Sbjct: 73 LQKHSQDTQCLVLTGFGSIRNSVEAIKMGAFDYITKPVKFDELLHSVSTAIKFKRLEREN 132 Query: 365 LALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHN 424 L +QL F +G S + V + +E VA +DSTVLI GE+GTGKELIARAIH Sbjct: 133 TILKKQLKK-KYRFENFVGDSPQIQRVFELIEKVADTDSTVLITGESGTGKELIARAIHY 191 Query: 425 LSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGD 484 S R + MV +NC A+P LLES+LFGHE+GAFTGA RIGRFE+A+ ++FLDE+GD Sbjct: 192 NSPRRDDPMVIINCGAIPEELLESELFGHEKGAFTGAHKTRIGRFEVANGGTIFLDEIGD 251 Query: 485 MPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNV 544 M LQ KLLRV+QEQ FER+GS + + D+R++AATN+DL + V +EFR DLYYRLNV Sbjct: 252 MSPNLQVKLLRVIQEQAFERIGSTRTMHVDIRILAATNKDLMEAVEKKEFREDLYYRLNV 311 Query: 545 FPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENV 604 PI +PPLR+R DIPLL F K+A R + I + L WPGNVRELENV Sbjct: 312 IPIEVPPLRDRKSDIPLLIDFFINKLAAEKERPVKRISQAAMNALMGHHWPGNVRELENV 371 Query: 605 IERAVLLTRGNVLQ-LSLPDIVLPEPETPPAATVVA---------LEGEDEYQLIVRVLK 654 +ER ++L+ G+ + LP +L P A + E E LIV+ L+ Sbjct: 372 VERVLILSSGDTIDKEDLPATILGLDSKEPEAGLKLPSGGIRFDHAVEEYEKNLIVQALE 431 Query: 655 ETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 E N V AA+ L + RTTL+ +MKR I Sbjct: 432 EANWV---KTQAAKLLHINRTTLVEKMKRKNIR 461 >UniRef50_C7PN78 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PN78_CHIPD Length = 541 Score = 586 bits (1511), Expect = e-165, Method: Composition-based stats. Identities = 198/532 (37%), Positives = 295/532 (55%), Gaps = 14/532 (2%) Query: 174 NVDYELLCRERDNFRILVAITNAVLSRLDMDELVSEVAKE-IHYYFDIDDISIVLRSHRK 232 + E L ++ IL+ ++N + + ++L + + F+ +I + + Sbjct: 2 EMFSEQLVQKEKEQAILLELSNRIAAARHREDLWDNLITAQLLELFNSKYYTICMINEDG 61 Query: 233 NKLNIYSTHYLDKQHPAHEQSEV-----DEAGTLTERVFKSKEMLLINLHERDDLAPYER 287 + + ++ + + V ++ + L + Sbjct: 62 VTHSPFLHSEESTIKSRTGETPIISDLHPIEDGVFNLVLEADGPVSFELQKLMRGRLVPP 121 Query: 288 MLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNA 347 ++ + + + + + +G G+L L + F+ + L I + I + N Sbjct: 122 YIYRWFNVGVVEMMAVKICNGQQPKGLLYLFTDQRDAFSEVDARLTNAITNILGIGISNI 181 Query: 348 LA-------YQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQ 400 LA QEI R +++L +EN L EQ + + F +I+G S M + + VA Sbjct: 182 LANETIEKQLQEIERFRQKLQNENHYLQEQ-QGLQNTFADIVGTSAEMQRRITILSRVAP 240 Query: 401 SDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTG 460 S+STVL+LGETGTGKE+ ARAIH S R + M+K+NCAA+P L+ES+LFGHE+G+FTG Sbjct: 241 SESTVLLLGETGTGKEVFARAIHAGSPRRDNLMIKVNCAALPPHLIESELFGHEKGSFTG 300 Query: 461 ASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAA 520 A+ +RIG+FELAD S+LFLDE+G++PLE Q KLLRVLQE+E ER+G I+ +VR++AA Sbjct: 301 ATQRRIGKFELADHSTLFLDEIGELPLEFQSKLLRVLQEKEIERIGGKGSIKVNVRIVAA 360 Query: 521 TNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDS 580 TNR+L++ V FRSDLYYRL+VFPI +PPLRER EDIP LA F + A R S Sbjct: 361 TNRNLEEEVRAGRFRSDLYYRLHVFPIAIPPLRERKEDIPALANHFLQRFAANSRREAPS 420 Query: 581 IPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVAL 640 I A+ + L + EWPGNVRELE+++ER +LLT V+ V P +T + Sbjct: 421 ISAKAMEGLMHYEWPGNVRELEHLMERTLLLTTTPVIAKIDLPGVPVTASKDPDSTFILP 480 Query: 641 EGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSALI 692 E + I++VLK NG +AGP GAA +L L TTL SRMK+LGI KS + Sbjct: 481 LDLMEKEYILKVLKLCNGRIAGPNGAAAKLKLPSTTLNSRMKKLGIKKSHYV 532 >UniRef50_C1F0X6 Sigma-54 dependent transcriptional regulator, Fis family n=3 Tax=Bacteria RepID=C1F0X6_ACIC5 Length = 781 Score = 586 bits (1510), Expect = e-165, Method: Composition-based stats. Identities = 235/555 (42%), Positives = 325/555 (58%), Gaps = 8/555 (1%) Query: 139 RYDDRPWS-EKEFNRLQTFTQIVSVVTEQIQSRVVNNVDYELLCRERDNFRILVAITNAV 197 RY+D W K+ +R I ++ +Q Q + + +L R R +L ++ +V Sbjct: 234 RYEDEGWRIRKDGSRFWANVLITALYDQQRQIIGYSKLTRDLTERRRAEEALLAELSVSV 293 Query: 198 LSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQHPAHEQSEVDE 257 L L + +++ VA + D SI L KN L+ Y P E S E Sbjct: 294 LPGLKIQQMLHAVASSMQRIVAHDYASITLLDQSKNVLHSYILSAAGDSGPEMELSVAPE 353 Query: 258 AGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKL 317 + V + E L + + L + I LPL+ + G L + Sbjct: 354 SSPEA-AVLHTHEALFLPSLQDSSFPQD--ALRHALSSGIHAAWWLPLVHEGRVAGALCI 410 Query: 318 AQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSE 377 K + + L Q+A ++A+ + A +++ ++L +E L E+L + Sbjct: 411 GVRNPKTLEHVSRHTLTQMAAQIALTIQGINAARQLSAQTQKLKEEKRYLEEEL-RTEYS 469 Query: 378 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMN 437 F EI+G E++ VLKQVE VA +D+T LILGETGTGKELIARAIHNLS R+ VK+N Sbjct: 470 FEEIVGNGESLRRVLKQVETVAPTDATTLILGETGTGKELIARAIHNLSARDGHTFVKVN 529 Query: 438 CAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVL 497 C+++P GLLES+LFGHE+GAFTGA QRIGR ELA + +LFLDE+GD+PL+LQPKLLR L Sbjct: 530 CSSIPTGLLESELFGHEKGAFTGAIQQRIGRLELAHQGTLFLDEIGDLPLDLQPKLLRAL 589 Query: 498 QEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPE 557 QE+E ERLG + I D RL+AAT+RDL +MV D +FRSDLYYRL VFPI LPPLR+R E Sbjct: 590 QEKEIERLGGRRTIPVDFRLLAATHRDLARMVKDGQFRSDLYYRLKVFPILLPPLRQRRE 649 Query: 558 DIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVL 617 DIP L F K ARR+ ++I+ IP + L WPGN+RELEN +ERAV+LTRG +L Sbjct: 650 DIPELVNYFVAKHARRMNKHIEEIPEPVMSALVRWHWPGNIRELENFLERAVILTRGPLL 709 Query: 618 QLSLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTL 677 + L ++ ET + E I++VL++ +GV+AG GAA+RLGLKRTTL Sbjct: 710 RAPLSELQELNIETDEPQS---TLEAAERAHILQVLRDCDGVIAGAGGAAERLGLKRTTL 766 Query: 678 LSRMKRLGIDKSALI 692 SRMK+LGI++ + Sbjct: 767 NSRMKKLGIERREYL 781 Score = 66.8 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 48/395 (12%), Positives = 119/395 (30%), Gaps = 11/395 (2%) Query: 10 GQQGLF-DITRTLLQQPDLASLCEALSQLVKRSALADNAAIVLWQAQTQRASYYASREK- 67 ++ L +++ ++L + + A++ ++R D A+I L Y Sbjct: 281 AEEALLAELSVSVLPGLKIQQMLHAVASSMQRIVAHDYASITLLDQSKNVLHSYILSAAG 340 Query: 68 DTPIKYEDETVLAHGPVRSILSRPDTLHCSYEEFCETWPQLDAGGLYPKFGHYCLMPLAA 127 D+ + E P ++L + L + L +PL Sbjct: 341 DSGPEMELSVAPESSPEAAVLHTHEALFLPSLQDSSFPQDALRHALSSGIHAAWWLPLVH 400 Query: 128 EGHIFGGCEFIRYDDRPWSEKEFNRLQTFTQIVSVVTEQIQSRVVNNVDYELLCRERDNF 187 EG + G + + + L +++ + I + + + L E+ Sbjct: 401 EGRVAGALCIGVRNPKTLEHVSRHTLTQMAAQIALTIQGINAARQLSAQTQKLKEEKRYL 460 Query: 188 RILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKN-KLNIYSTHYLDKQ 246 + + + E + V K++ D +++L +L + H L + Sbjct: 461 EEELRTEYSFEEIVGNGESLRRVLKQVETVAPTDATTLILGETGTGKELIARAIHNLSAR 520 Query: 247 --HPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLP 304 H + + L E E + + E T P Sbjct: 521 DGHTFVKVNCSSIPTGLLESELFGHEKGAFTGAIQQRIGRLELAHQGTLFLDEIGDL--P 578 Query: 305 LMSGDTMLGVLK---LAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLV 361 L +L L+ + + + + LL +A V + +++ + Sbjct: 579 LDLQPKLLRALQEKEIERLGGRRTIPVDFRLLAATHRDLARMVKDGQFRSDLYYRLKVFP 638 Query: 362 DENLALTEQLNNVDSEFGEIIGRS-EAMYSVLKQV 395 L ++ ++ + + M ++++ Sbjct: 639 ILLPPLRQRREDIPELVNYFVAKHARRMNKHIEEI 673 >UniRef50_C0GSN4 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GSN4_9DELT Length = 519 Score = 585 bits (1508), Expect = e-165, Method: Composition-based stats. Identities = 174/509 (34%), Positives = 276/509 (54%), Gaps = 16/509 (3%) Query: 184 RDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYL 243 + +L I+ + LD+D+ + + K + + + L I ++H L Sbjct: 8 QVKLNVLHEISKVIEKALDLDKALEAILKILADSLSMKRGAFSFIEEDSGLLVISASHGL 67 Query: 244 DKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLL 303 Q +DE +T R+F + + ++ ++ L + +I + + Sbjct: 68 TSQEKNRGVYRMDEG--VTGRIFSTGKPFIVPDIAKEPLFLDKTGSRSMEKERI-SFAGV 124 Query: 304 PLMSGDTMLGVLKLAQ-CEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVD 362 P+ T +GVL + + ++ + ++ LL +A VA V +++ +E L Sbjct: 125 PVTLQGTTVGVLTVDRLFDQDISLEEDIQLLSIVAAMVAQFVS---LNRQVKDREENLRR 181 Query: 363 ENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAI 422 EN L +L++ F I+G+S +M V + +E VA + +TVL+LGE+GTGK LIA I Sbjct: 182 ENQNLKTRLSSSFQRFF-IVGKSSSMLQVRQMMEKVAPTRATVLLLGESGTGKTLIAGII 240 Query: 423 HNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEV 482 H LS R +K+NCA++P LLES+LFG+E+GAFTGA + GRFE A + ++FLDE+ Sbjct: 241 HELSERGKFPFIKVNCASLPENLLESELFGYEKGAFTGAERSKPGRFEEAHRGTIFLDEI 300 Query: 483 GDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRL 542 G+MP LQ KLLR LQE+EFERLG K + DVR+IAATN++L K V + FR DLYYRL Sbjct: 301 GEMPAGLQAKLLRFLQEREFERLGGVKTHRVDVRVIAATNKELDKEVQEGRFREDLYYRL 360 Query: 543 NVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELE 602 NVFPI +P LRER EDIP L F K+AR GR + + +L L EWPGN+RE+E Sbjct: 361 NVFPIWVPSLRERREDIPSLINHFLDKMAREYGRRLV-LSNSSLDYLVEYEWPGNIREME 419 Query: 603 NVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEG----EDEYQLIVRVLKETNG 658 N++E+ +++ G ++ L + + + P + E + I+ L+ + Sbjct: 420 NLMEKLSIMSEGQIVALKDLPSDMQQEKVCPGKVQEQARDHSLLDMEKKEILSALQRNSW 479 Query: 659 VVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 + AA+ LGL + + R+K+ ++ Sbjct: 480 I---QSRAARELGLTQRQMGYRIKKFNLE 505 >UniRef50_B5YH04 Transcriptional regulator n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YH04_THEYD Length = 511 Score = 583 bits (1503), Expect = e-165, Method: Composition-based stats. Identities = 173/508 (34%), Positives = 275/508 (54%), Gaps = 24/508 (4%) Query: 180 LCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYS 239 + + L ++ + S D+ + + V + + D+ SI + + +++I + Sbjct: 2 TRHKNIELKALFEVSRVLTSSFDLAQNLYSVLEILSKELDMRRGSIFIFDKKTEEISIVA 61 Query: 240 THYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQT 299 + L ++ + + + E + +V ++ + I E++ + + + Sbjct: 62 AYGLTQEEMSRGRYRIGEG--IVGKVIETGLPMFIPDIEKEPQFLNKTGSRP--NKKGIS 117 Query: 300 LCLLPLMSGDTMLGVLKLAQ--CEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLK 357 +P+ D +LGV+ + EE+ +L +L +A + + +Y Sbjct: 118 FLCVPIRIEDEILGVISADRIYAEEQGDVDDDLRVLSVVASLIGQFIKLWESY------- 170 Query: 358 ERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKEL 417 + + DEN+ L QL + F ++G+S + +VLK V VA +D+TVL+ GE+GTGKEL Sbjct: 171 KIMEDENIILRAQLKD-RYNFPNLVGQSPSFQAVLKTVMKVASTDATVLLFGESGTGKEL 229 Query: 418 IARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSL 477 IA+ IH S R V +NCAA+P LLE++LFG E+GAFTGA RIG+FE A+ ++ Sbjct: 230 IAKTIHFQSKRAKGPFVAINCAAIPENLLEAELFGSEKGAFTGAVK-RIGKFEQANGGTI 288 Query: 478 FLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSD 537 FLDE+ ++PL LQPKLLRVLQE+ E LGS+K I+ DVRLI+ATN+DL + + FR D Sbjct: 289 FLDEIAELPLSLQPKLLRVLQERTVEPLGSSKTIRVDVRLISATNKDLSEEIRKGNFRED 348 Query: 538 LYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGN 597 L++RLNV PI++PPLRER EDIPLL + + +++ SI E L+ L + +WPGN Sbjct: 349 LFWRLNVIPIYIPPLRERKEDIPLLVEYYLKSFCNIYRKSV-SIDEEALKVLVSYDWPGN 407 Query: 598 VRELENVIERAVLLTRGNVLQL-SLPDIVLP----EPETPPAATVVALEGEDEYQLIVRV 652 VREL N IER V++T + +++ LPD V +P + + E E I+ Sbjct: 408 VRELANTIERLVVMTESSKIKVYDLPDTVRGVFKLKPYSLGDLKLPTEVEELERIRIMDT 467 Query: 653 LKETNGVVAGPKGAAQRLGLKRTTLLSR 680 L + N + AQ LGL L R Sbjct: 468 LPKFN---FNIRKTAQALGLTERQLNYR 492 Score = 50.6 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 42/353 (11%), Positives = 106/353 (30%), Gaps = 16/353 (4%) Query: 8 DLGQQGLFDITRTLLQQPDLASLCEALSQLVKRSALADNAAIVLWQAQTQRASYYASREK 67 ++ + LF+++R L DLA ++ +++ + +I ++ +T+ S A+ Sbjct: 6 NIELKALFEVSRVLTSSFDLAQNLYSVLEILSKELDMRRGSIFIFDKKTEEISIVAAYGL 65 Query: 68 DTPIKYEDETVLAHGPVRSILSRPDTLHCSYEEFCETWPQLDAGGLYPKFGHYCLMPLAA 127 + G V ++ + E + K + +P+ Sbjct: 66 TQEEMSRGRYRIGEGIVGKVIETGLPMFIPDIEKEPQFLNKTGSRPNKKGISFLCVPIRI 125 Query: 128 EGHIFGGCEFIRY--DDRPWSEKEFNRLQTFTQIVSVVTEQIQSRVVNNVDYELLCRERD 185 E I G R +++ + + L ++ + +S + + +L Sbjct: 126 EDEILGVISADRIYAEEQGDVDDDLRVLSVVASLIGQFIKLWESYKIMEDENIILR---A 182 Query: 186 NFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDK 245 + N V ++ V K D +++L + + + Sbjct: 183 QLKDRYNFPNLVGQSPSFQAVLKTVMKVAST-----DATVLLFGESGTGKELIAKTIHFQ 237 Query: 246 QHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTL--CLL 303 A + E + ++ E+ G I L Sbjct: 238 SKRAKGPFVAINCAAIPENLLEA-ELFGSEKGAFTGAVKRIGKFEQANGGTIFLDEIAEL 296 Query: 304 PLMSGDTMLGVLKLAQCEE---KVFTTTNLNLLRQIAERVAIAVDNALAYQEI 353 PL +L VL+ E ++ L+ + ++ + +++ Sbjct: 297 PLSLQPKLLRVLQERTVEPLGSSKTIRVDVRLISATNKDLSEEIRKGNFREDL 349 >UniRef50_B8FLD5 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FLD5_DESAA Length = 1035 Score = 582 bits (1502), Expect = e-164, Method: Composition-based stats. Identities = 191/570 (33%), Positives = 299/570 (52%), Gaps = 20/570 (3%) Query: 125 LAAEGHIFGGCEFIRYDDRPWSEKEFNRLQTFTQIVSVVTEQIQSRVVNNVDYELLCRER 184 ++ ++R P + + +Q ++ + E++ + ++ + Sbjct: 482 MSLIRSRLETARYLRKIGDPGAGDKLT--TQVSQSLASMDEKLVPDDLRHMVSRD-GNSK 538 Query: 185 DNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHR---KNKLNIYSTH 241 R ++ + ++ D ELV + + + +I + K +L + ++ Sbjct: 539 KLLREILELGQELVKIRDYHELVQRIISTGNRVTGAERGAIFMSEKGNSGKEELRLKASR 598 Query: 242 YLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLC 301 L H A+ + + E V S L+ + D + IQ+ Sbjct: 599 NLTSDHVANPSFV--SSMKMIEMVAASGRGLIAGVESTDTEGY-------SSEGAIQSKI 649 Query: 302 LLPLMSGDTMLGVLKLA-QCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERL 360 +PL D ++GVL + F +L++L + AIA+DNA AY +I R +L Sbjct: 650 CVPLCLHDQVVGVLYHDNRLLASAFREEDLDVLSYFSALAAIALDNARAYDQIRRWNIKL 709 Query: 361 VDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIAR 420 E E+ + +F EI+G S A+ VL ++E VA +++TVLI GETG GKEL+AR Sbjct: 710 SREKQYY-EEAHLSYLQFDEIVGHSPAINEVLSKIEQVANTETTVLITGETGVGKELVAR 768 Query: 421 AIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLD 480 AI S R + + + +A+P L+ S+L GHE+GAFTGA+ ++ GR ELAD +LFLD Sbjct: 769 AIQKHSSRAQQPFIGVQLSALPKDLMASELLGHEKGAFTGATHRQAGRLELADGGTLFLD 828 Query: 481 EVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYY 540 E+GD+ ++Q +LLRVLQ ++FER+G K + +D RLIAATNR+L+ +V D FR+DLYY Sbjct: 829 EIGDISHDIQIRLLRVLQTRQFERVGGMKTLSSDFRLIAATNRELESLVRDGRFRADLYY 888 Query: 541 RLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRE 600 RLNVFPI++PPLR+R EDIPLLA F A +L + + I + L +WPGNVRE Sbjct: 889 RLNVFPIYVPPLRDRREDIPLLAMHFLKLHAAKLNKQVMRISDREMDMLKEYDWPGNVRE 948 Query: 601 LENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVV 660 L+NV+ER V+L+ ++ + P A E+E I+R+LK T V Sbjct: 949 LKNVVERGVILSTNRDFRM---PELQSGDCPPLTVGDTATLAENERSHILRILKRTGWKV 1005 Query: 661 AGPKGAAQRLGLKRTTLLSRMKRLGIDKSA 690 AG GAA+ L + +TL RM +LGI + Sbjct: 1006 AGASGAAKILDIPPSTLSFRMNKLGIKRPG 1035 >UniRef50_B5EIR5 Transcriptional regulator, NifA subfamily, Fis Family n=6 Tax=Bacteria RepID=B5EIR5_GEOBB Length = 664 Score = 580 bits (1496), Expect = e-164, Method: Composition-based stats. Identities = 202/541 (37%), Positives = 315/541 (58%), Gaps = 24/541 (4%) Query: 160 VSVVTEQIQSRVVNN-VDYELLCRERDNFRILVAITNAVLSR--LDMDELVSEVAKEIHY 216 +V + I + + + E L E L +++A ++ ++D + + +++ Sbjct: 122 CGLVVQDITEQKLRQSLQTERLQVE----AFLSNLSSAFINVPVSEVDRKIEKALQKVVN 177 Query: 217 YFDIDDISIVLRSHRKNKLNIYSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINL 276 + + SI + ++ L I ++ L P +E+ + + + E ++ Sbjct: 178 FLGFERSSIWHFTPDRSSLRITHSYALPGVKP--PPTELMNLIPIWIEMIQLGESFRVSD 235 Query: 277 HERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNL-NLLRQ 335 E + + I+++ +P G T++G + K L LR Sbjct: 236 VEELSDKFWREKQYCKDQGGIKSIMFIPASVGGTIVGAITFVSYSVKKEWPDELTQRLRL 295 Query: 336 IAERVAIAVDNALA-------YQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAM 388 + E A A++ A EI +LK+RL EN+ L +Q+ +V+ + EIIG+SEA+ Sbjct: 296 LWEVFANALERKRADQKIQNALAEIRQLKDRLEAENVYLRDQI-DVEYKHEEIIGKSEAI 354 Query: 389 YSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLES 448 +VL+Q++ VA +DSTVLILGETGTGKELIARAIHN R R M+K+NCAA+PA L+E+ Sbjct: 355 RNVLQQIQQVAPTDSTVLILGETGTGKELIARAIHNAGQRKARAMIKVNCAALPAALIEA 414 Query: 449 DLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSN 508 +LFGHE+GA+TGA + +IGRFE A+ S++FLDE+G++PLELQ KLLRV+QE +FERLG++ Sbjct: 415 ELFGHEKGAYTGAVSSQIGRFEAANGSTIFLDEIGELPLELQSKLLRVIQEGQFERLGNS 474 Query: 509 KIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTF 568 K ++ DVR+IAATN LK+ V + +FR DLYYRLNVFPI +PPLR+R EDIPLL A Sbjct: 475 KPVKADVRVIAATNVSLKQAVKEGKFREDLYYRLNVFPIFVPPLRDRQEDIPLLVWAMVE 534 Query: 569 KIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPE 628 + ++ G+ I+ IP + + + WPGN+REL N++ERA++L+ G L + + D Sbjct: 535 EFSKVFGKTIERIPRKNMEIMERYLWPGNIRELRNLVERAMILSNGGTLVVDILDGSAAA 594 Query: 629 PETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDK 688 P E + I +L++T + G GAA+ L +K TTL SR+K+LG+ + Sbjct: 595 ANEP------MTMEAAERKHIGFILEKTGWRIRGKGGAAEILDMKPTTLHSRIKKLGVKR 648 Query: 689 S 689 Sbjct: 649 K 649 Score = 51.8 bits (123), Expect = 9e-05, Method: Composition-based stats. Identities = 44/339 (12%), Positives = 95/339 (28%), Gaps = 18/339 (5%) Query: 31 CEALSQLVKRSALADNAAIVLWQAQTQRASYYASREKDTPIKYEDETVLAHGPVRSILS- 89 E Q V + ++I W R+S + P T L + I Sbjct: 168 IEKALQKVVNFLGFERSSI--WHFTPDRSSLRITHSYALPGVKPPPTELMNLIPIWIEMI 225 Query: 90 --RPDTLHCSYEEFCETWPQLDA-GGLYPKFGHYCLMPLAAEGHIFGGCEFIRYD-DRPW 145 EE + + + +P + G I G F+ Y + W Sbjct: 226 QLGESFRVSDVEELSDKFWREKQYCKDQGGIKSIMFIPASVGGTIVGAITFVSYSVKKEW 285 Query: 146 SEKEFNRLQTFTQIVSVVTEQIQSRVVNNVDYELLCRERDNFRI----LVAITNAVLSRL 201 ++ RL+ ++ + E+ ++ + + +D L + Sbjct: 286 PDELTQRLRLLWEVFANALERKRADQKIQNALAEIRQLKDRLEAENVYLRDQIDVEYKHE 345 Query: 202 DM---DELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQHPAHEQSEVDEA 258 ++ E + V ++I D ++L K I + Q A +V+ A Sbjct: 346 EIIGKSEAIRNVLQQIQQVAPTDSTVLILGETGTGKELIARAIHNAGQRKARAMIKVNCA 405 Query: 259 GTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCL-LPLMSGDTMLGVL-- 315 + + + R LPL +L V+ Sbjct: 406 ALPAALIEAELFGHEKGAYTGAVSSQIGRFEAANGSTIFLDEIGELPLELQSKLLRVIQE 465 Query: 316 -KLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEI 353 + + ++ ++ + AV +++ Sbjct: 466 GQFERLGNSKPVKADVRVIAATNVSLKQAVKEGKFREDL 504 >UniRef50_Q7M8U4 TRANSCRIPTIONAL REGULATOR (NIFA FAMILY) n=1 Tax=Wolinella succinogenes RepID=Q7M8U4_WOLSU Length = 512 Score = 579 bits (1493), Expect = e-163, Method: Composition-based stats. Identities = 183/515 (35%), Positives = 279/515 (54%), Gaps = 18/515 (3%) Query: 181 CRERDNFRILVAITNAVLSRL-DMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYS 239 C R L I+ A+ + ++ + E + +F +D S LN+++ Sbjct: 12 CTRYQELRALYDISLALGGSVGEVKKAFEEALGLLKRHFFLDKSVYYELSEESQTLNVFA 71 Query: 240 THYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQT 299 + L K+ +V E T K++E +++ ++ L + + Sbjct: 72 SAGLSKEQEFLASYKVGEG--ATGLAAKAREPIIVENIHQNLLFLNKSGSR---NEGEIS 126 Query: 300 LCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKER 359 +P +S + +LGVL ++ + + + + IA ++ +Q IH K+R Sbjct: 127 YLAVPALSQERILGVLGVSLTKHSMSDFDEMVTILTIAA--SLMAQARRIHQSIHEEKKR 184 Query: 360 LVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIA 419 + +E L E+L EIIG S + V + + +A S +TVLI GETGTGKELIA Sbjct: 185 ISEEKLYYKEELLKQS----EIIGYSPPIKRVSEIIAKIAPSSATVLIRGETGTGKELIA 240 Query: 420 RAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFL 479 +AIHN S R + +K+NCAA+P LLES+LFGHE+GAFT A R GRFELAD +LFL Sbjct: 241 KAIHNYSPRKEKPYIKLNCAAIPENLLESELFGHEKGAFTDARETRKGRFELADGGTLFL 300 Query: 480 DEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLY 539 DEVGD+ L LQ K+LR+LQEQEFER+G +K I+ DVR++AATNRDL++MV +FR DL+ Sbjct: 301 DEVGDLSLPLQAKILRILQEQEFERVGGSKTIKVDVRIVAATNRDLEEMVRMGDFREDLF 360 Query: 540 YRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVR 599 YRLNV PI PPLR+R +D+ LL++ F + +R + + + + L + +WPGN+R Sbjct: 361 YRLNVIPIFSPPLRDRGDDVILLSRYFLERFCKRHAKEL-HLTPKAEELLKHYDWPGNIR 419 Query: 600 ELENVIERAVLLTRGNVLQLSLPDIVLPEPET--PPAATVVALEGEDEYQLIVRVLKETN 657 ELEN IER VLL + + VLP A E E I++ LKE + Sbjct: 420 ELENSIERLVLLAPSESIDEEVVLSVLPGRVHGYTKEVKTRADLEELERSAIIKALKECH 479 Query: 658 GVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSALI 692 G+ AA++LG+ + ++++ I+ + Sbjct: 480 GI---KLQAAKKLGITNRQIGYKIQKYEIEPEDYL 511 >UniRef50_B8FJD2 Transcriptional regulator, NifA subfamily, Fis Family n=2 Tax=Bacteria RepID=B8FJD2_DESAA Length = 1038 Score = 577 bits (1489), Expect = e-163, Method: Composition-based stats. Identities = 193/629 (30%), Positives = 302/629 (48%), Gaps = 17/629 (2%) Query: 64 SREKDTPIKYEDETVLAHGPVRSILSRPDTLHCSYEEFC--ETWPQLDAGGLYPKFGHYC 121 + ED I EE ET L + L K+ Sbjct: 424 LPAVQAALAMEDLKEWQKSRNILIKGGAYRYQALLEEKRGVETSKVLRSMKLSEKWLEES 483 Query: 122 LMPLAAEGHIFGGCEFIRYDDRPWSEKEFNRLQTFTQIVSVVTEQIQSRVVNNVDYELLC 181 + Y +K +Q +++ + + + L Sbjct: 484 GHEIQLARTRMEMARL--YLSMGQEKKAKGAMQKSAELLDSFLHDQVPDNLRFLL-KDLR 540 Query: 182 RERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTH 241 +++ ++ + + + + +LV + ++ + ++ L + K + Sbjct: 541 TDKNLLEEIMKLGQELATIRNDRDLVRHILATVNRITGAERGAVFLVNKETGKPAVVLRA 600 Query: 242 YLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLC 301 + + E + + + R L R + + Sbjct: 601 ARNIMEQDISRPEFQSSMKMVREAAFTGR-------ARFRLTEAPRQSHPLENKVVHSCI 653 Query: 302 LLPLMSGDTMLGVLKLAQCEEKVFT-TTNLNLLRQIAERVAIAVDNALAYQEIHRLKERL 360 +P+ +T+LGVL + +++ +L + + AIA+DNA +++ L +L Sbjct: 654 CVPMKFRETVLGVLYVDNRIFPSALKESDIRILDFFSSQAAIALDNARIHEQNRALIRKL 713 Query: 361 VDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIAR 420 +E L EQ + E +G A+ VL V+ +A +DSTVLILGETG GKELI+ Sbjct: 714 EEEKRYLEEQQSEFQPPV-EFVGECAAVRKVLNDVKKIAATDSTVLILGETGVGKELIST 772 Query: 421 AIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLD 480 AIH S R + +++NC+ P GL+ S+LFGHE+GAFTGA +R+GRFELAD +LFLD Sbjct: 773 AIHERSSRAGKPFIRVNCSMFPEGLIASELFGHEKGAFTGADKRRLGRFELADGGTLFLD 832 Query: 481 EVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYY 540 E+GD+ E+Q +LLRVLQ +EFER+G +++D RL+AATNRDL++ V +FR DLYY Sbjct: 833 EIGDISHEVQVRLLRVLQNKEFERVGGRSTLRSDFRLLAATNRDLREDVKTGKFREDLYY 892 Query: 541 RLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRE 600 RLNV + +PPLRER EDIPLL F + A+ LG+ ++ E L L +WPGNVRE Sbjct: 893 RLNVLSLKIPPLRERKEDIPLLVDYFLDRHAKNLGKPRGAVTPEDLDKLVAYDWPGNVRE 952 Query: 601 LENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVV 660 LENVIER+ +L+ G L++ + + E+E + I+ LK+T G V Sbjct: 953 LENVIERSAILSSGARLEI---PDLFQSGASFALDREALSLEENERRHILWALKKTGGKV 1009 Query: 661 AGPKGAAQRLGLKRTTLLSRMKRLGIDKS 689 GP GAA+ L + TL SR+K+LGI + Sbjct: 1010 RGPGGAAELLEINHNTLFSRIKKLGIKRK 1038 >UniRef50_B5ER80 Transcriptional regulator, NifA, Fis Family n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5ER80_ACIF5 Length = 545 Score = 577 bits (1489), Expect = e-163, Method: Composition-based stats. Identities = 175/547 (31%), Positives = 272/547 (49%), Gaps = 52/547 (9%) Query: 185 DNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLD 244 + ++ + S +D++ +++V K + + I IVLR + + + + L Sbjct: 11 QELTTIYEVSKVLSSSMDLEHTLNDVLKTLESHLHISPSMIVLR-MNEEIVGVIAATGLS 69 Query: 245 KQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLP 304 + + E + ++ ++ ++I ++ R ++ +P Sbjct: 70 VAEIERGRYRLGEG--MIGKIMRAGMPIVIPDVSQEPAFL-HRAFEPEISQRLHAFVGVP 126 Query: 305 LMSGDTMLGVLKLAQCEE--KVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVD 362 + G +GVL + + E V +++ LL+ IA V V+ +Q I + RL+ Sbjct: 127 IKVGYECIGVLAIYRSERHKGVSFRSDVRLLQMIANLVGQTVN---LHQGISAERNRLLQ 183 Query: 363 ENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAI 422 E L ++L +IG S AM +V V A +TVL+ GE+GTGKE+IARAI Sbjct: 184 EKHRLQKELQK-RYSIKNVIGNSRAMQAVFADVHQAAPGKATVLLRGESGTGKEVIARAI 242 Query: 423 HNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEV 482 H LS R ++ V +NCAA+P +LES+LFGHERGAFTGA+ +R GRFELAD +LFLDE+ Sbjct: 243 HYLSPRRDKAFVSLNCAALPESILESELFGHERGAFTGATQERKGRFELADGGTLFLDEI 302 Query: 483 GDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRL 542 GD+ Q KLLRVLQE+EFER+G + + +VR+IAATNR+L++ V+ EFR+DLYYR+ Sbjct: 303 GDISPAFQAKLLRVLQEREFERVGGTQTRRVNVRIIAATNRNLEEAVSKGEFRADLYYRI 362 Query: 543 NVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELE 602 NV I LPPLRER EDIP L + F + R + ++ E L+T+ + WPGNVRELE Sbjct: 363 NVVSIFLPPLRERREDIPALIEHFLARYNAENQRKL-TLTPEALQTMVSCYWPGNVRELE 421 Query: 603 NVIERAVLLTRGNVLQLSL--------------------------------------PDI 624 N +ER + RG++++ PD+ Sbjct: 422 NCVERTATMMRGDIIRNLDVPCQRNQCLSMALRPLEGSHPIVTMKLSSGMSVPPHAAPDV 481 Query: 625 VLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRL 684 + A E +++ + V AA+ LG L + + Sbjct: 482 EGQVTDASGAGDGEGSLPLSERDRLIQAMDRCGWV---QAKAARLLGTTTRKLGYALNKH 538 Query: 685 GIDKSAL 691 GI+ L Sbjct: 539 GIEVKKL 545 >UniRef50_A0LH02 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LH02_SYNFM Length = 510 Score = 576 bits (1486), Expect = e-163, Method: Composition-based stats. Identities = 162/509 (31%), Positives = 269/509 (52%), Gaps = 12/509 (2%) Query: 181 CRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYST 240 ++ + L +D+ + + + + +I L L I ++ Sbjct: 4 RIRETELNVIFETCRVIGQALKLDQALDTILAILSSSLAMKRATITLEDEDTGYLIIRAS 63 Query: 241 HYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTL 300 H L DE +T +F+S + ++ ++ L + + + Sbjct: 64 HGLTDAERRRGVYRKDEG--ITGLIFQSADSYVVPDISKEPLFLNKTRSR-LIQKESISF 120 Query: 301 CLLPLMSGDTMLGVLKLAQ-CEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKER 359 +P++ +GVL + + ++V ++ LL +A +A V +++ + + Sbjct: 121 LGVPILLHGKAIGVLHVDRLFGDEVPFEEDIRLLSIVATLIAQFVS---LNRQVKLREAK 177 Query: 360 LVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIA 419 L+ + ++ F ++GRS +M V + +E VA S ++VL+LGE+GTGK L+A Sbjct: 178 LLRDCSPSGKKGIEAGDRFF-MVGRSPSMLVVQRHIEKVAPSKASVLLLGESGTGKTLVA 236 Query: 420 RAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFL 479 + +H LS R++ VK+NCA++P LLES+LFG+E+GAFTGA + GR E A+ ++FL Sbjct: 237 QMLHELSIRSSAPFVKINCASLPENLLESELFGYEKGAFTGAVRSKPGRIEEAEGGTVFL 296 Query: 480 DEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLY 539 DEVG++ LQ KLLR LQ++EFERLGS + DVR++AATNRDL +VA+ FR DLY Sbjct: 297 DEVGELTPALQAKLLRFLQDKEFERLGSTRTRVVDVRVLAATNRDLAAVVAEGTFREDLY 356 Query: 540 YRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVR 599 YRLNVFPI +PPLR R EDIP L F +I+R GR I I + L+ +WPGNVR Sbjct: 357 YRLNVFPIQIPPLRARKEDIPDLLHHFLDRISREYGRRI-GITNAAMALLAGYDWPGNVR 415 Query: 600 ELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGV 659 E+EN++ER V++ + + +++ L E T ++ + E + I+ L+ Sbjct: 416 EMENLVERMVIMADEDEIGVNVLPPFLSEQMTGSGGETLSRIEKMERKEILAALERNGW- 474 Query: 660 VAGPKGAAQRLGLKRTTLLSRMKRLGIDK 688 A+ LG+ + R+++ G+D+ Sbjct: 475 --NQTRTAKELGITLRQIGYRVRKFGLDR 501 >UniRef50_A4SC79 DNA-binding protein Fis / transcriptional regulator, Fis family n=11 Tax=Bacteria RepID=A4SC79_PROVI Length = 704 Score = 575 bits (1482), Expect = e-162, Method: Composition-based stats. Identities = 227/695 (32%), Positives = 340/695 (48%), Gaps = 33/695 (4%) Query: 17 ITRTLLQQPDLASLCEALSQLVKRSALADNAAIVLWQAQTQRASYYA---SREKDTPIKY 73 I+ + D L L+ ++ D+A IV + S + Sbjct: 16 ISDAVGSVRDPQELFHTLTDKLRLMFKFDSAVIVTIDKDRRYVSVFFEMFLFPIAQGFAN 75 Query: 74 EDETVLAHGPVRSILSRPDTLHCSYEEFC----ETWPQLDAGGLYPKFGHYCLMPLAAEG 129 E + + +E +++P L L PL + G Sbjct: 76 EKRLLAGSWFEPFLTKPAVATVSIGDELRRHGNDSYPILKIFYD-AGMRQIVLSPLLSGG 134 Query: 130 HIFGGCEFIRYDDRPWSEKEFNRLQTFTQIVSVVTEQIQSRVVNNVDYELLCRERDNFRI 189 + G F+ D++ WSE E + L + T +S+ Y+ L + + Sbjct: 135 EVIGFLNFVSRDEKAWSEAERDLLASVTSPISMAVSNAL-------AYDELRQREAETAM 187 Query: 190 LVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLR-SHRKNKLNIYSTHYLDKQHP 248 +A+ NA+++ D +++ V ++I + + I + +L H + + Sbjct: 188 QLAVNNALMTIRDRGQMLLAVCEQISKLLPVVYLGIRVFGDDGTPRLADNFMHDEEGRFI 247 Query: 249 AHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGN-----QIQTLCLL 303 + E + + +S+E++ D I T+ Sbjct: 248 SVSTEERLSHTGDEDAMRESRELIAHPGVYSGDRFLQLARESRLVAEVQERYGICTIISA 307 Query: 304 PLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDE 363 L L ++ F L L I ++++A+ N LA+ EI L++RL E Sbjct: 308 QLWDAPGSHAGLIISSSRRP-FEEAELATLNLIIPQLSLALQNLLAFDEIDTLRQRLEGE 366 Query: 364 NLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIH 423 L E++ V F EIIG S + +VL++V VA +D+TVLI GETGTGKEL ARAIH Sbjct: 367 RTYLKEEIRAVH-NFEEIIGTSAPLAAVLRRVSQVAPTDATVLIQGETGTGKELFARAIH 425 Query: 424 NLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVG 483 LS RN R +V++NCAA+PA L+ES+LFGHE+G+FTGA+ +RIG+FELAD ++FLDE+G Sbjct: 426 TLSPRNERVLVRVNCAALPATLIESELFGHEKGSFTGATGRRIGKFELADGGTIFLDEIG 485 Query: 484 DMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLN 543 ++PLELQ K+LRVLQE+E ERLG K+I +VR+IAA+NRDL+K VA FR+DL++RLN Sbjct: 486 ELPLELQSKMLRVLQEREIERLGGGKLIPVNVRVIAASNRDLQKEVAAGRFRADLFFRLN 545 Query: 544 VFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELEN 603 FPI LPPLR R DI +LA F K AR GR I ++ L +W GN+REL + Sbjct: 546 AFPIFLPPLRARTGDISMLALHFAQKFAREFGRPNRPIRERDMQELKERQWKGNIRELAH 605 Query: 604 VIERAVLLTRGNVLQLS--------LPDIVLPEPET--PPAATVVALEGEDEYQLIVRVL 653 IE+AV+LT G VL S + P P A E E LI+ L Sbjct: 606 AIEQAVILTDGPVLDFSTILTPRSRHLAALSPSPAKGIQSMAIFEEEVREMERTLILDAL 665 Query: 654 KETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDK 688 + G V+G GAA+ L + TL +R+++LG+ K Sbjct: 666 DQAKGRVSGKGGAAELLSIHPKTLYTRIEKLGLRK 700 >UniRef50_C1SIC3 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SIC3_9BACT Length = 540 Score = 575 bits (1482), Expect = e-162, Method: Composition-based stats. Identities = 163/540 (30%), Positives = 273/540 (50%), Gaps = 39/540 (7%) Query: 184 RDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYL 243 + + I+ + S + + ++ ++ I+L N+L + ++ L Sbjct: 8 KTALNTIYEISVILNSSNMIQHSLYRSLLQMSDTLSMERGLILLHDKDTNELFVEASIGL 67 Query: 244 DKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLL 303 D + + +VFK +LI +++ + + L + + + Sbjct: 68 DNDEGPVKNMRYKADEGVVGKVFKYGIPILIPDVQKEPMFLNK--LGRNAKKEEISFIAV 125 Query: 304 PLMSGDTMLGVLKLAQCEEKVFTTT-NLNLLRQIAERVAIAVDNAL----AYQEIHRLKE 358 P+ + GVL + + K+++ T ++++L+ IA +A + + I + K Sbjct: 126 PIKHQNQTYGVLAVDKVVSKMYSITTDVDILKMIATLMASFLHKVQFFTSEMEAIQQEKS 185 Query: 359 RLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELI 418 R+ +E L L ++ ++ ++G M VL +V+MV SDS VLI GE+GTGKE++ Sbjct: 186 RIEEEKLKLIGEVTQ-KYQYEGLVGSGRLMRKVLDKVQMVTASDSAVLIRGESGTGKEVV 244 Query: 419 ARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLF 478 A+ IH S R + V +NCAA+P L+ES+LFG+ +GAFTGA+ ++ G+FE AD ++F Sbjct: 245 AKTIHYNSNRRKKPFVAVNCAAIPGELIESELFGYSKGAFTGAAGEKKGKFEQADGGTIF 304 Query: 479 LDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDL 538 LDE+GDMP+E Q KLLRVLQ++ E+LG K +Q DVR++AATN++L+ V EFR DL Sbjct: 305 LDEIGDMPMEAQSKLLRVLQDKVVEKLGGTKPVQVDVRILAATNKNLEAAVQSGEFRLDL 364 Query: 539 YYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNV 598 YYRLNVF I LPPLR+R EDIP +A+ +++R +N +I E + L N +PGN+ Sbjct: 365 YYRLNVFAIFLPPLRKRKEDIPEIAQHILKNLSKRYNKN-YTISPEAVTALMNCNYPGNI 423 Query: 599 RELENVIERAVLLTRGNVLQLSLPD---------------------IVLPEPETPPAATV 637 RELEN +ER+ G ++ + P+ P Sbjct: 424 RELENCLERSAFTAGGGEIKTKHISCMRGEMCMSHFMEEQLSGSSTAITPQTGGIPDNDY 483 Query: 638 VALEGED------EYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSAL 691 + E E + +V+ L++ V AA+ L + + R+K+ I + Sbjct: 484 SEADNELISGNMDERERVVQALEKAGWV---QAKAARMLDMTVRQMNYRIKKFNIKVKKI 540 >UniRef50_D0MEW0 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MEW0_RHOM4 Length = 495 Score = 575 bits (1482), Expect = e-162, Method: Composition-based stats. Identities = 176/506 (34%), Positives = 266/506 (52%), Gaps = 21/506 (4%) Query: 184 RDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNK-LNIYSTHY 242 R + LV I + + D + ++ +V + + + I+L++ + + I S Sbjct: 7 RTSLDALVEIAQTINTLRDPEAVLEKVLEIAMETLEAERGFILLKAPQHPEGFAIRSQRN 66 Query: 243 LDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCL 302 Q V + ++ V + E +L+ ++D+ +IQ++ Sbjct: 67 FTDQQLGEL---VRISTSVVHEVLRRGEPVLVYEAQQDERY---GKAESIVLQRIQSIAC 120 Query: 303 LPLMSGDTMLGVLKLAQC-EEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLV 361 +PL + ++G + L + FT NL L A + AIA++NA YQ + RL Sbjct: 121 VPLRIKERLIGAIYLDSLSQRGRFTRDNLPFLEAFAHQAAIAIENAQLYQALREENRRLR 180 Query: 362 DENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARA 421 E L F EI+G+S AM V + V +D+TVLI GE+GTGKELIARA Sbjct: 181 SEIQRL--------HGFDEIVGQSPAMREVFDTMARVLDTDATVLIEGESGTGKELIARA 232 Query: 422 IHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDE 481 IH S R ++ V + C ++P LLES+LFG+++GAFTGA + + G FE+AD ++FLDE Sbjct: 233 IHYNSERKDKPFVVVFCGSLPDELLESELFGYKKGAFTGALSDKKGLFEVADGGTVFLDE 292 Query: 482 VGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYR 541 VGD+ +Q LLRVLQE E R+G ++ + DVR+I+ATN+ L+++V +FR DLYYR Sbjct: 293 VGDLSPRMQTALLRVLQEGEIRRVGDTQVRKVDVRVISATNKPLRELVQQGKFREDLYYR 352 Query: 542 LNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVREL 601 LN I +PPLR R DIPLLA F K A + +I E L L WPGNVREL Sbjct: 353 LNTIQITVPPLRHRRGDIPLLAHHFLDKYAVKKRAHIKGFTPEALELLERYHWPGNVREL 412 Query: 602 ENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVVA 661 EN IERAV+L RG ++ + + P + E E ++++R LK G ++ Sbjct: 413 ENTIERAVVLARGELITPEDLRLPDTDGADPFEPDL--PLKEVERRVVLRTLKRHGGNIS 470 Query: 662 GPKGAAQRLGLKRTTLLSRMKRLGID 687 A+ LG+ R L ++K + Sbjct: 471 ---ETARVLGVSRRWLHYKLKEWDVQ 493 Score = 72.9 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 37/256 (14%), Positives = 80/256 (31%), Gaps = 10/256 (3%) Query: 1 MSYTPMSDLGQQGLFDITRTLLQQPDLASLCEALSQLVKRSALADNAAIVLWQAQTQRAS 60 MS +P + L +I +T+ D ++ E + ++ + A+ I+L Q Sbjct: 1 MSASP-TRTSLDALVEIAQTINTLRDPEAVLEKVLEIAMETLEAERGFILLKAPQHPEGF 59 Query: 61 YYASREKDTPIKYEDETVLAHGPVRSILSRPDTLHCSYEEFCETWPQLDAGGLYPKFGHY 120 S+ T + + ++ V +L R + + + E + + ++ L + Sbjct: 60 AIRSQRNFTDQQLGELVRISTSVVHEVLRRGEPVLVYEAQQDERYGKAESIVL-QRIQSI 118 Query: 121 CLMPLAAEGHIFGGCEFIRYDDRP-WSEKEFNRLQTFTQIVSVVTEQIQSRVVNNVDYEL 179 +PL + + G R ++ L+ F ++ E Q + Sbjct: 119 ACVPLRIKERLIGAIYLDSLSQRGRFTRDNLPFLEAFAHQAAIAIENAQLYQALREENRR 178 Query: 180 LCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYS 239 L E I + EV + D D ++ K I Sbjct: 179 LRSEIQRLHGFDEIVG-------QSPAMREVFDTMARVLDTDATVLIEGESGTGKELIAR 231 Query: 240 THYLDKQHPAHEQSEV 255 + + + V Sbjct: 232 AIHYNSERKDKPFVVV 247 >UniRef50_B4U9N2 Transcriptional regulator, NifA subfamily, Fis Family n=5 Tax=Aquificaceae RepID=B4U9N2_HYDS0 Length = 502 Score = 571 bits (1473), Expect = e-161, Method: Composition-based stats. Identities = 164/510 (32%), Positives = 271/510 (53%), Gaps = 14/510 (2%) Query: 177 YELLCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLN 236 + E + +L +++ A+ S+ D D+ + ++ K + ++ ++ I + Sbjct: 2 SNKIKLENIDVSLLTSVSKAL-SQKDFDKALRDILKIFYSFWGVEYSYIAFYDKSTKTIK 60 Query: 237 IYSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQ 296 I + + ++ + + +FK+ ++I + D + + D N+ Sbjct: 61 IREAFGFN---QSVKKILFESGKGIVGNIFKNSIPVVIKDPKHDKAFLNKTKILDKIKNE 117 Query: 297 IQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRL 356 +P+ S D +GV L + K T + + + + I + Sbjct: 118 --AFIGVPIRSEDRTIGVFCLFKDLNKHEELTRIVDIMLVVSAMIGMSYKLFG---ILQE 172 Query: 357 KERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKE 416 ++ +E L + + +G+SEA+ ++ ++ +A +DSTVL+LGE+G GK Sbjct: 173 EKASWEEQRQLLAKEFSDTFSIEGFVGKSEAIITLKDTIQKIAMTDSTVLLLGESGVGKT 232 Query: 417 LIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSS 476 LIA+AIH LS R ++ + +NCAA+P LLE++LFG+E+GAFTGA + G+FELA+ + Sbjct: 233 LIAKAIHTLSERKDKPFISVNCAAIPETLLEAELFGYEKGAFTGAVHSKKGKFELANGGT 292 Query: 477 LFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRS 536 +FLDE+G++PL+ Q KLLRV+QE+E E+LG+ K I +VR+IA+TN+DL MVA EFR Sbjct: 293 IFLDEIGELPLQSQSKLLRVIQEKELEKLGAEKSIFVNVRVIASTNKDLASMVARGEFRE 352 Query: 537 DLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPG 596 DLYYRLNV PI +P LRER EDIPLL K F K + ++I +I E + L N WPG Sbjct: 353 DLYYRLNVIPIRVPALRERKEDIPLLVKHFLDKFNKHYKKHI-NIEKEAMEALVNYNWPG 411 Query: 597 NVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKET 656 N+RELEN+IER V++ + + + + ++ E + I + L++ Sbjct: 412 NIRELENLIERLVVINNKD-ITKEDVLLATKINSNKLQTDIPSIIESTEKEAIKKALEKC 470 Query: 657 NGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 V AA+ LGL L R+K+ I Sbjct: 471 GYV---KSKAAKILGLTLRQLDYRIKKYNI 497 >UniRef50_Q39TH4 Transcriptional regulator, NifA subfamily, Fis family n=1 Tax=Geobacter metallireducens GS-15 RepID=Q39TH4_GEOMG Length = 556 Score = 571 bits (1471), Expect = e-161, Method: Composition-based stats. Identities = 210/517 (40%), Positives = 308/517 (59%), Gaps = 16/517 (3%) Query: 182 RERDNFRILVAITNAVLSRL---DMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIY 238 ER F +L++ ++V S L ++D+ + + + + D ++V S +++ ++ Sbjct: 35 EERLRFEMLLSEISSVYSNLPVEEVDKTIESGLQRLGEFLGADRCNLVQFSEDGSRVLVF 94 Query: 239 STHYLDKQHPAHEQSEVDEA-GTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQI 297 + D P D ++F +++ + + A + +I Sbjct: 95 HSWIHDDAKPDPGFIAPDHNLFPWFAKMFHLGKVVQFSHLDDLP-AEAATDITALLALRI 153 Query: 298 QTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNL-NLLRQIAERVAIAVDNAL-------A 349 ++ +P+ G + G L LA L LR + E A A+ A Sbjct: 154 KSQVSVPISVGGHVFGTLSLATVRSYRSWPDELVPRLRLVGEIFANALVRKQKELQIRKA 213 Query: 350 YQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILG 409 +Q+I L E L + L E++ +++ + IIG+S + VL +++ +A +D+TVLILG Sbjct: 214 FQQIKELNEELAADCTYLREEI-DLNYDVHHIIGQSLPLKRVLAKIQQIALTDTTVLILG 272 Query: 410 ETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRF 469 ETGTGKEL+ARAIH S R +R MVK+NCA++PA L+ES+LFGHE+GAFT A ++IGRF Sbjct: 273 ETGTGKELVARAIHAASQRRDRPMVKVNCASLPANLIESELFGHEKGAFTSAQVRQIGRF 332 Query: 470 ELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMV 529 E AD+++LFLDE+G++PLE Q KLLRVLQE EFERLGS++ ++ DVR++AATNRDL++ V Sbjct: 333 EFADRNTLFLDEIGELPLESQAKLLRVLQEGEFERLGSSRTLKVDVRIVAATNRDLEEEV 392 Query: 530 ADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTL 589 FR DL+YRLN+FPI +PPLRER EDIPLL F K R+LG++I IPA +++L Sbjct: 393 RKGRFRQDLWYRLNIFPITVPPLRERTEDIPLLINLFVNKFGRKLGKSIRRIPAGVMKSL 452 Query: 590 SNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGEDEYQLI 649 +WPGNVRELENVIERA + T G LQ L D + T A E E I Sbjct: 453 QAYDWPGNVRELENVIERAAINTVGPSLQ--LLDNLKSSLVTEKTAAPRLTLEEAERSHI 510 Query: 650 VRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 ++VL +TNG + GPKGAA LG+ +TL +RM++LGI Sbjct: 511 LQVLADTNGRIEGPKGAALILGINHSTLRARMRKLGI 547 >UniRef50_UPI00016C3921 transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C3921 Length = 527 Score = 571 bits (1471), Expect = e-161, Method: Composition-based stats. Identities = 223/511 (43%), Positives = 301/511 (58%), Gaps = 24/511 (4%) Query: 200 RLDMDELVSEVAKEIHYYFDIDDISIVLRSHRK--NKLNIYSTHYLDKQ-HPAHEQSEVD 256 D+ L+ ++++ + + +S L KL A +E+ Sbjct: 12 HTDLAALLRDLSQALGPHLPRGYLSFALLEPHSHAGKLQFLEPVGGGPAPKSADTPTELP 71 Query: 257 EAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLK 316 + T V+ ++E L + D P R F G ++ C +PL + LG + Sbjct: 72 AGESPTAHVWDTQEPLWL-DVTADGRFPVLRTAFAKQG--VRCACFVPLTTPRRKLGAMA 128 Query: 317 LAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDS 376 ++N Q+ VA+AV+ AL QE+ R RL E L L E++ Sbjct: 129 FTSYLPVSPAPDDINFTLQVGRLVALAVEGALTRQELERANARLAAEKLYLEEEIRADR- 187 Query: 377 EFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKM 436 E++G S + VLKQVE+VA +DS VL+ GETGTGKEL+ARA+H LS R+ R VK+ Sbjct: 188 RMHEVVGDSRTLQEVLKQVEVVAPTDSAVLVTGETGTGKELVARAVHRLSARSERTFVKL 247 Query: 437 NCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRV 496 NCAA+P GLLES+LFGHE+GAFTGA +R+GRFELAD +LFLDEVGD+P ELQPKLLRV Sbjct: 248 NCAAIPTGLLESELFGHEKGAFTGAVERRLGRFELADGGTLFLDEVGDIPQELQPKLLRV 307 Query: 497 LQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERP 556 LQEQEFERLGS K ++ +VRL+AAT+R+L K+VA+ +FRSDLYYRL+VFP+HLP LR+R Sbjct: 308 LQEQEFERLGSAKTVKVNVRLVAATHRNLAKLVAEGKFRSDLYYRLHVFPVHLPALRDRR 367 Query: 557 EDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNV 616 EDIP L + F A+R G+ I++IPAE + L WPGNVREL+++IERAV+LT G+ Sbjct: 368 EDIPSLVRHFVALFAQRFGKRIETIPAEAMAALERYAWPGNVRELQHLIERAVILTTGSE 427 Query: 617 LQLSLPDIVLPEPETPPAATVV-----------------ALEGEDEYQLIVRVLKETNGV 659 L++ L ++ E P E E LI R L V Sbjct: 428 LRVPLGELTPTTAEPPSHPRPAVALTIPPTSPAEPPPQFNALRESERDLIRRALDRCGWV 487 Query: 660 VAGPKGAAQRLGLKRTTLLSRMKRLGIDKSA 690 + GP GAA +LGLKRTTLLSRMK+LG+ + Sbjct: 488 IGGPNGAAAQLGLKRTTLLSRMKKLGLTRDG 518 Score = 114 bits (287), Expect = 9e-24, Method: Composition-based stats. Identities = 32/229 (13%), Positives = 60/229 (26%), Gaps = 7/229 (3%) Query: 24 QPDLASLCEALSQLVKRSALADNAAIVLWQAQTQRASYYASREKDTPIKYEDETVLAH-- 81 DLA+L LSQ + + L + + + Sbjct: 12 HTDLAALLRDLSQALGPHLPRGYLSFALLEPHSHAGKLQFLEPVGGGPAPKSADTPTELP 71 Query: 82 ---GPVRSILSRPDTLHCSYEEFCETWPQLDAGGLYPKFGHYCLMPLAAEGHIFGGCEFI 138 P + + L +P L C +PL G F Sbjct: 72 AGESPTAHVWDTQEPLWLDV-TADGRFPVLRTAFAKQGVRCACFVPLTTPRRKLGAMAFT 130 Query: 139 RYDDRPWSEKEFNRLQTFTQIVSVVTEQIQSRVVNNVDYELLCRERDNFRILVAITNAVL 198 Y + + N ++V++ E +R L E+ + + Sbjct: 131 SYLPVSPAPDDINFTLQVGRLVALAVEGALTRQELERANARLAAEKLYLEEEIRADRRMH 190 Query: 199 SRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKN-KLNIYSTHYLDKQ 246 + + EV K++ D +V +L + H L + Sbjct: 191 EVVGDSRTLQEVLKQVEVVAPTDSAVLVTGETGTGKELVARAVHRLSAR 239 >UniRef50_B8IZX3 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 RepID=B8IZX3_DESDA Length = 522 Score = 569 bits (1467), Expect = e-160, Method: Composition-based stats. Identities = 179/524 (34%), Positives = 246/524 (46%), Gaps = 36/524 (6%) Query: 182 RERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTH 241 +L + + D+ + + + K + + +I L S ++ + + Sbjct: 14 HHEQQLSLLYELAQIMNFTTDLTQALDKALKLMARQLHMMRGAITLISPHTGEIRTEAGY 73 Query: 242 YLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLC 301 L + E +T RV +S + I+ + L D I + Sbjct: 74 GLKPAELRRGRYVRGEG--ITGRVIESGRPMYISNVSEEPLFLNRTRSRDLSKEGI-SFI 130 Query: 302 LLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLV 361 +P+ D ++G L + T + L I + Sbjct: 131 CVPIRLNDQVVGALSVDHLLVDEATLEDEMRLLTIVSTLLGHAAL--------------- 175 Query: 362 DENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARA 421 E ++ + +G SE M V Q+ VA S +TV + GE+GTGKEL ARA Sbjct: 176 -ETQGRMDEETSSPLRPRGFVGNSEGMQKVYAQIAQVAPSVTTVFLQGESGTGKELAARA 234 Query: 422 IHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDE 481 IH+ S R + + +NCAA+P L+ES+LFGHERGAFTGASA R GRFELA +LFLDE Sbjct: 235 IHSGSARAGKPFISLNCAALPENLIESELFGHERGAFTGASATRKGRFELAHGGTLFLDE 294 Query: 482 VGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYR 541 VG++ L Q KLLRVLQE+ FERLG + DVR I ATNR+L+ MVA FR DL+YR Sbjct: 295 VGELSLMTQAKLLRVLQERAFERLGGMETHYVDVRFITATNRNLEHMVAKESFRRDLFYR 354 Query: 542 LNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVREL 601 LNVFPI+LPPLR RPEDI LA F K A+ GR + + L WPGN+REL Sbjct: 355 LNVFPIYLPPLRGRPEDILPLANHFIRKFAQANGRENVRLSLSVMDMLQRYAWPGNIREL 414 Query: 602 ENVIERAVLL--TRGNVLQLSLPDIVLP------------EPETPPAATVVALEGEDEYQ 647 ENV+ERAVLL G VL LP + + ++ E E Sbjct: 415 ENVMERAVLLLGREGLVLPQHLPPALHGAHCAGISGESACAARPGFSGSLQDQLDELERA 474 Query: 648 LIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSAL 691 IV L+ + G + AA LGL + RMK+ I+ Sbjct: 475 SIVEALEFSQGQM---GKAAASLGLTERIMALRMKKYEINYKEF 515 >UniRef50_C7LX45 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LX45_DESBD Length = 529 Score = 568 bits (1465), Expect = e-160, Method: Composition-based stats. Identities = 169/517 (32%), Positives = 276/517 (53%), Gaps = 26/517 (5%) Query: 186 NFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDK 245 R+L+AI+ + LD++ + + K + + ++ L +L I +++ L Sbjct: 9 ELRVLLAISKVIDQALDLESALESILKILSDTMSMRRATVTLYDPLSGRLAISTSYGLSA 68 Query: 246 QHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPL 305 +DE +T +F++ + ++ + L + +I + +P+ Sbjct: 69 LEKQRGVYRMDEG--ITGIIFRTAKPYVVPDISLEPLFLDKTGTRRISQERI-SFVGVPI 125 Query: 306 MSGDTMLGVLKLAQCEEKVF-TTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDEN 364 + + +GV+ + + + L +A ++ + +++ + + L EN Sbjct: 126 LLHGSPIGVMNVDRVFTGQEQLDADTEFLTVVATLISQFLS---LNEKVKKREAALKQEN 182 Query: 365 LALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHN 424 +L Q+ + I+G+S+AM V + V VA + +TVL+LGE+GTGK LI R IH Sbjct: 183 TSLKYQIARENHGPY-IVGKSQAMLEVEQYVAKVAITKATVLLLGESGTGKTLIGRIIHE 241 Query: 425 LSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGD 484 LS R +K+NCAA+P LLE++LFG+E+GAFTGA++ + GRFE A ++FLDE+G+ Sbjct: 242 LSDRKTHPFIKVNCAAIPENLLEAELFGYEKGAFTGANSTKPGRFEDAHLGTIFLDEIGE 301 Query: 485 MPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNV 544 +PL LQ KLLRVLQE+EFER+GSNK + DVR+I+ATNR+L+ +V FR DLYYRLNV Sbjct: 302 LPLTLQSKLLRVLQEREFERIGSNKTRKVDVRIISATNRELEALVGHGLFREDLYYRLNV 361 Query: 545 FPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENV 604 FP+H+P +RER EDIP L F ++ R GR++ ++ L L +WPGNVRELEN+ Sbjct: 362 FPVHVPAVRERKEDIPRLLNHFQKEMEREYGRSL-TLTTGALDLLLAYDWPGNVRELENL 420 Query: 605 IERAVLLTRGNVLQLSL------PDIVLPEPETPPAATVV--------ALEGEDEYQLIV 650 +ER V+LT ++ L P+ P P E E + ++ Sbjct: 421 VERLVILTDDKPVEAELVRGFLTPETHRPGPARHAPEPPAHPEQEDYCQPLKETERREVL 480 Query: 651 RVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 LK + AA+ L L + R+++ ++ Sbjct: 481 AALKRNAWIQY---KAARELNLTPRQMGYRVRKFNLE 514 >UniRef50_A1AL12 Transcriptional regulator, Fis family n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A1AL12_PELPD Length = 687 Score = 567 bits (1462), Expect = e-160, Method: Composition-based stats. Identities = 198/569 (34%), Positives = 284/569 (49%), Gaps = 27/569 (4%) Query: 133 GGCEFIRYDDRPWSEKEFNRLQTFTQIVSVVTEQIQSRVVNNVDYELLCRERDNFRILVA 192 G +I P S V + + L R+ L Sbjct: 126 GSIRWIHSRGGPHSCNGGKSYCVMGASADV--------TQRKQNEQTLLRQLSFESFLAE 177 Query: 193 ITNAVLSRL---DMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQHPA 249 ++ D+D + + +F D ++ K I Y + Sbjct: 178 TSSVFAKSTLPSDLDHQIEHALWRLLDHFHGDRCGLIKVDLEGEKTIITHAVYREGLERL 237 Query: 250 HEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGD 309 ++ + R + + + +R I++ +PL + Sbjct: 238 PGDVDLVALFPWSFRQLREGRCYCFSDLAELPV-EADRDRASWMAMGIRSGLHVPLRVEN 296 Query: 310 TMLGVLKLAQCEEKVFTTTN-LNLLRQIAERVAIAVDNALAYQEIH-------RLKERLV 361 + ++ + + T + LN L+ I + A+ E+ RLK++L Sbjct: 297 RVHYLIVVESHSGILAGTEDVLNRLQIIGDLFVNALHRKATEDELRSSCDEIARLKDKLE 356 Query: 362 DENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARA 421 E L ++ +I+G+SE + VL VE VA + STVL+ GETGTGKEL+A+A Sbjct: 357 LEADYLRSEVRASRFN-DQIVGQSEPIQGVLAMVEQVAPTPSTVLVYGETGTGKELVAQA 415 Query: 422 IHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDE 481 IHN S R ++ MVK+NCA++P+ L+ES+LFG ERGA+TGA +++GRFELAD SSLFLDE Sbjct: 416 IHNHSPRRDKLMVKVNCASLPSSLVESELFGRERGAYTGALTRQMGRFELADGSSLFLDE 475 Query: 482 VGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYR 541 + ++ LELQ KLLRVLQE EFERLGS + I+ DVR+IAATNR+L + V FR DLYYR Sbjct: 476 IAELSLELQSKLLRVLQEGEFERLGSPRTIKVDVRVIAATNRNLLEEVRKGRFREDLYYR 535 Query: 542 LNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVREL 601 L+VFPI +PPLRER EDIPLLA F ++G+ I I + L + WPGNVREL Sbjct: 536 LSVFPIVVPPLRERREDIPLLAWEFVRDFNEKMGKRILRIAKRDMLALQSYSWPGNVREL 595 Query: 602 ENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVVA 661 NVIE AV+++ G+ L++ LP+ ++ P + E E I VL+ T + Sbjct: 596 RNVIEYAVIVSPGDELKIRLPENIVNAP------PQMTTLEEMERHYIQDVLRRTEWRIK 649 Query: 662 GPKGAAQRLGLKRTTLLSRMKRLGIDKSA 690 G GAA L L TL SRMK+LGI Sbjct: 650 GEGGAAHILDLNPATLYSRMKKLGILPPR 678 >UniRef50_C0GSE0 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GSE0_9DELT Length = 730 Score = 565 bits (1457), Expect = e-159, Method: Composition-based stats. Identities = 180/564 (31%), Positives = 277/564 (49%), Gaps = 31/564 (5%) Query: 124 PLAAEGHIFGGCEFIRYDDRPWSEKEFNRLQTFTQIVSVVTEQIQSRVVN-NVDYELLCR 182 PLAA G E + D ++ + +Q + +T +IQ E L Sbjct: 191 PLAALVKAAGEVEPGKKMDVQFNVQGQKEIQALSDAFRRMTSRIQEYTTRLEEQAEALEH 250 Query: 183 ERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHY 242 + + V + DMDE+ + + I I++ ++ L + + Sbjct: 251 AHRRMQTTCEVARNVSALSDMDEIGGYLMRRIKKIIHCPSNLILVFGPDRDVLFVITEKG 310 Query: 243 LDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCL 302 +D A + V ++ + + + + Sbjct: 311 TYPVSDRQTAQSIDAALQNLQGV-ETIDGRVFESLPLPEGFVLGEKQ-----------VV 358 Query: 303 LPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVD 362 +PL D + G + + + + ++ L+ + + + A+ +QE Sbjct: 359 VPLYYEDILCGAMLASCSSKCKCDSDSMELISLVLSHASGTIRRAILHQE---------- 408 Query: 363 ENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAI 422 E L + ++ + F +IGR M ++ + ++ VA +D TVLI GE+GTGKEL+A+AI Sbjct: 409 EIKKLKQGVSE-SAGFEGMIGRDYRMQTIYRLIQDVAPTDVTVLIQGESGTGKELVAKAI 467 Query: 423 HNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEV 482 H S R + V +NC+A PA LLES+LFGHE+GAFTGA QR GRFE A ++FLDE+ Sbjct: 468 HARSSRRDNPFVVINCSAYPATLLESELFGHEKGAFTGAIRQRPGRFEQARGGTVFLDEI 527 Query: 483 GDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRL 542 ++ L Q KLLRVLQ Q+FERLG K I+ DVR++AATN+DL + V FR DLYYRL Sbjct: 528 AEVDLSAQVKLLRVLQTQKFERLGGEKSIEVDVRILAATNKDLLEEVKAGRFREDLYYRL 587 Query: 543 NVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELE 602 +V PI+LPPLRER D LLA+ F + A + I+ I + +R L + WPGNVRELE Sbjct: 588 DVVPINLPPLRERGNDTALLARHFLERFAAVQDKRINEISSSAMRALLDYSWPGNVRELE 647 Query: 603 NVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAG 662 NV+E+AV+L +G + L L + E L++ L+ Sbjct: 648 NVMEQAVVLCKGETIALEDLPDKLQGARPAR----RKTIEDQEKNLLLETLEACGW---N 700 Query: 663 PKGAAQRLGLKRTTLLSRMKRLGI 686 K AA+RLG+ R+TL +++K+ GI Sbjct: 701 KKMAAERLGIGRSTLYAKLKKHGI 724 >UniRef50_B6YRB5 Nif-specific regulatory protein n=1 Tax=Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 RepID=B6YRB5_AZOPC Length = 521 Score = 564 bits (1455), Expect = e-159, Method: Composition-based stats. Identities = 165/513 (32%), Positives = 265/513 (51%), Gaps = 12/513 (2%) Query: 178 ELLCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNI 237 C + L + + + D + + + K + + I L L Sbjct: 8 RGKCCAEADLTFLSNMGDLLNEMEDPKDALEGILKNLCGFLKAFVGMITLHDRLSGMLMT 67 Query: 238 YSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQI 297 ++ L + + E + RV +++ +I+ +D + + T + Sbjct: 68 SVSYGLTAEEKMKAIYQTGEG--IIGRVAATRKPAIISDISKDSVFLNRTGIVST--ERP 123 Query: 298 QTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLK 357 +P+++ + ++G L + + ++ + + I + + + Sbjct: 124 MAFLCVPVINKNELVGTLSIHKVNDRGMDFSYEEKILTIIGSLIG--KHISVRRRHIEEL 181 Query: 358 ERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKEL 417 E L EN L Q ++G S M + V+ VA ++STV+I GE+G GKEL Sbjct: 182 EELRRENQLLQSQSIEKPFRPDNMVGNSALMRELYGLVKRVAPTNSTVIIRGESGVGKEL 241 Query: 418 IARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSL 477 IA AIH S R + V++NC+A+P L+ES+LFG+E+GAFTGA Q GRFELAD ++ Sbjct: 242 IAEAIHKASSRIKKPFVRVNCSALPENLIESELFGYEKGAFTGAERQHSGRFELADGGTI 301 Query: 478 FLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSD 537 FLDE+ D+P +Q KLLR+LQ+++FER+G IQTDVR++ ATNR+L++M+ + FR D Sbjct: 302 FLDEIADIPFSVQVKLLRILQQRQFERIGGTHTIQTDVRIVTATNRNLEEMLQNNTFRED 361 Query: 538 LYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGN 597 LYYR++VFPI++P LRER DI +L F KI ++ N+ I + L L WPGN Sbjct: 362 LYYRIHVFPIYVPALRERRADITILTDHFIQKINKQNQTNVKRITSGALDMLMMYSWPGN 421 Query: 598 VRELENVIERAVLLTRGNVLQ-LSLPDIVLP--EPETPPAATVVALEGEDEYQLIVRVLK 654 VRELENVIERA++LT +V+ +LP + +T + + G+ E Q+I+ L Sbjct: 422 VRELENVIERAMILTTDDVIHSYNLPPSLQTGVSSDTVKVGRLDLVLGKVERQMIMDTLI 481 Query: 655 ETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 G VA +A +LG+ + R+KR I+ Sbjct: 482 ANRGNVA---KSAFQLGISERVMGLRIKRYNIN 511 >UniRef50_A4J443 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Peptococcaceae RepID=A4J443_DESRM Length = 455 Score = 564 bits (1453), Expect = e-159, Method: Composition-based stats. Identities = 154/429 (35%), Positives = 237/429 (55%), Gaps = 17/429 (3%) Query: 276 LHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQ 335 + + + L + + T +P G +L +K A V T Sbjct: 30 VATAANGLQCQDKLMQFKPDVLITDIRMPEKDGFGLLEQIKSAGLNIPVILMTAFGTTEV 89 Query: 336 IAERVAIA----VDNALAYQEIHRLKERLVDEN---LALTEQLNNVDSEFGEIIGRSEAM 388 + + + + E L +R V ++ + S IIG S +M Sbjct: 90 AIKAMKLGAFDYIVKPFDLDEFLDLIQRAVAQSDTVATFPQAQEPASSTGINIIGNSPSM 149 Query: 389 YSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLES 448 +V K + VA S++TVLI GE+GTGKEL+ARAIH S R N +K+NCA +P LLES Sbjct: 150 RNVYKDIGRVADSNATVLIQGESGTGKELVARAIHYNSSRRNNPFIKVNCANLPDSLLES 209 Query: 449 DLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSN 508 +LFG+E+GAFTGAS+ ++GRFELA + ++F DE+G++ L Q KLLR +QE+EF+R+G Sbjct: 210 ELFGYEKGAFTGASSLKVGRFELAHEGTIFFDEIGEISLATQAKLLRAIQEKEFDRVGGT 269 Query: 509 KIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTF 568 K I+ +VR++AATNR LK+ V + EFR DL++RLNV I +PPLR+R EDIPLL F Sbjct: 270 KTIKVNVRILAATNRKLKQSVREGEFREDLFFRLNVVNIEIPPLRDRKEDIPLLIAHFLA 329 Query: 569 KIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPE 628 K + + I E ++ L +WPGNVRELENV+ER++++ RG ++ + Sbjct: 330 KYNKEFNKEIKGFSKEAIKLLIGYDWPGNVRELENVVERSIIMARGAIIVPEDIQLGATV 389 Query: 629 PETP-------PAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRM 681 + P ++ + + E ++I++ L+E N A+ L + R +L ++M Sbjct: 390 SQQPTELEILDENLSLKQIISDVERKVILKALEENNWC---RTTVAKVLKINRRSLYAKM 446 Query: 682 KRLGIDKSA 690 K LGI+++ Sbjct: 447 KELGIEENG 455 >UniRef50_C9RBQ4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Ammonifex degensii KC4 RepID=C9RBQ4_AMMDK Length = 470 Score = 564 bits (1453), Expect = e-159, Method: Composition-based stats. Identities = 169/454 (37%), Positives = 231/454 (50%), Gaps = 19/454 (4%) Query: 249 AHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSG 308 A VD+ ++ E + E ++ + + + +P M G Sbjct: 2 AKLVLVVDDEKSVCEALKDVLEESGYSVVTATSGREALEKVNLIRPHAVLLDIRMPEMDG 61 Query: 309 DTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIA----VDNALAYQEIHRLKERLVDEN 364 +L L+ V T + + + + + E+ E+ Sbjct: 62 IKVLQALREKHPGVPVILMTAYSDTQTTINAMRYGAFEYIVKPINLDELLSTLEKATTVT 121 Query: 365 LALTEQLNNV-DSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIH 423 L G +IG S AM V K + +A SD TVLI GE+GTGKEL+A AIH Sbjct: 122 EPLVTVGKGEIAPRPGTLIGCSPAMQEVYKTIGRIADSDVTVLIQGESGTGKELVAEAIH 181 Query: 424 NLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVG 483 S R + VK++C A+P LLES+LFGHE+GAFTGA +++G+FELAD ++FLDE+G Sbjct: 182 YNSPRQGKPFVKIDCTAIPENLLESELFGHEKGAFTGAHTRKLGKFELADGGTVFLDEIG 241 Query: 484 DMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLN 543 D+ LQ KLLR LQE+ FER+G + + DVR+IAATN+DL++ V FR DLYYRLN Sbjct: 242 DISPALQAKLLRFLQEKAFERVGGTETRRVDVRIIAATNKDLEERVKSGLFREDLYYRLN 301 Query: 544 VFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELEN 603 V I LPPLRER EDI LL F R+ G+ + + L WPGNVREL N Sbjct: 302 VVEIKLPPLRERKEDIMLLVDYFVSLSNRKFGKQVTGLTRSVADILLQYNWPGNVRELRN 361 Query: 604 VIERAVLLTRGNVLQLS-LPDIVLPE----------PETPPAATVVALEGEDEYQLIVRV 652 V ERAVL+ RGNV+ LP+ +L E + + E E I+R Sbjct: 362 VCERAVLMARGNVITPESLPEYLLRAVRGRTEAWHPAEDRGVLPLKEMVAEMERSAILRA 421 Query: 653 LKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 L+E G A+ LG+ RTTL ++MK LGI Sbjct: 422 LEEYRG---NKTAVARALGMSRTTLYAKMKELGI 452 >UniRef50_C8W392 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W392_DESAS Length = 459 Score = 562 bits (1448), Expect = e-158, Method: Composition-based stats. Identities = 167/459 (36%), Positives = 244/459 (53%), Gaps = 26/459 (5%) Query: 251 EQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDT 310 + VD+ + E + E + + +++ + + + LP G Sbjct: 3 KVLIVDDEEGVCEMLKDVLEDEGFEITLAYNAKDALKIMETEFPDTVLLDIRLPDADGIE 62 Query: 311 MLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALA----YQEIHRL------KERL 360 ++ LK E V T + + + L E+ +RL Sbjct: 63 VMDKLKQMGIEVPVILMTAFGTTEIAIQAMKQGAHDYLNKPLNLDELVLAVQKSIKMQRL 122 Query: 361 VDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIAR 420 V E L E+L+ IG+S M V K + V SD TVLI GE+GTGKE++AR Sbjct: 123 VSEVAILREELDQETDSVDSFIGQSRHMQDVFKTIGKVVDSDITVLIQGESGTGKEVVAR 182 Query: 421 AIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLD 480 IH+ S R++R +K+NCA +P L+ES+LFGHE+G+FTGA +Q+ G+FE+A +FLD Sbjct: 183 TIHSNSRRSSRPFIKINCATIPEQLMESELFGHEKGSFTGAVSQKAGKFEIAHNGIVFLD 242 Query: 481 EVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYY 540 E+G++PL Q KLLRVLQE+EFER+G K I+ DVR++AATNR+L+ MV + +FR DLYY Sbjct: 243 EIGELPLHTQAKLLRVLQEKEFERVGGTKSIEVDVRILAATNRNLEDMVQEGKFREDLYY 302 Query: 541 RLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRE 600 RLNV + LPPLRER EDI LL F K AR+ +NI I E + WPGNVRE Sbjct: 303 RLNVVNVKLPPLRERKEDISLLINYFVKKFARKYNKNISGISQEAMIFAEKYAWPGNVRE 362 Query: 601 LENVIERAVLLTRGNVLQLSLPDIVLPEP-------------ETPPAATVVALEGEDEYQ 647 ++NV E+AV++ R +VL L ++ +T ++ + E E Q Sbjct: 363 IKNVCEQAVVMARNSVLMLDDMPLIGNGNGFLEFKNNAKISLDTNDKRSLKDIVAEVEKQ 422 Query: 648 LIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 +I++ L E N A+ LGL R +L ++MK + Sbjct: 423 VILKSLNENNWNRQN---TAKALGLNRRSLYAKMKEYDL 458 >UniRef50_A4J616 Two component, sigma54 specific, transcriptional regulator, Fis family n=10 Tax=Bacteria RepID=A4J616_DESRM Length = 454 Score = 559 bits (1442), Expect = e-157, Method: Composition-based stats. Identities = 164/421 (38%), Positives = 242/421 (57%), Gaps = 29/421 (6%) Query: 287 RMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIA--- 343 ++ + + +P M G +L K + + T + E + + Sbjct: 42 DIIRKETPSLVILDLKMPEMDGLEVLVKAKDLMPKLPIIMITAHGTIDTAIEAMKLGATD 101 Query: 344 -VDNALAYQEIHRLKER------LVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVE 396 + E+ + + L +E L +LN ++G+I+G S+A++ V +E Sbjct: 102 YITKPFDLDELKMVIRQALMVNHLQEEVTFLRSELNK---KYGQIVGNSQAIHDVCGLIE 158 Query: 397 MVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERG 456 VA S++TVL+ GE+GTGKE+ A +IH LS R ++ V +NCAA+P LLES+LFGHE+G Sbjct: 159 KVADSNATVLVTGESGTGKEITALSIHQLSSRRDKPFVPINCAALPESLLESELFGHEKG 218 Query: 457 AFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVR 516 AFTGA A+++GRFELA++ +LFLDE+ +MPL +Q KLLRVLQE+EFER+G I+ DVR Sbjct: 219 AFTGAVARKLGRFELANQGTLFLDEITEMPLSMQVKLLRVLQEKEFERVGGTDSIKIDVR 278 Query: 517 LIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGR 576 +IAATNRD + + FR DL+YRLNV PIHLPPLRER EDIPLLA F K Sbjct: 279 VIAATNRDPMECIRKGTFREDLFYRLNVLPIHLPPLRERTEDIPLLAMHFIKKFNPS--- 335 Query: 577 NIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAAT 636 + E + L + EWPGN+REL+NVIER+++L +GN ++ + + + T Sbjct: 336 QEQRMSPEAMGLLISYEWPGNIRELQNVIERSIILAQGNEIKPHHLPKEIQKLDEVKNET 395 Query: 637 VVALE----------GEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 L E E +LI++ L+++NG AAQ LG+ R+ LL R ++ + Sbjct: 396 THGLIINFPDDGISFDEVEKELILKALEKSNG---NQTRAAQLLGITRSALLYRAQKYRL 452 Query: 687 D 687 Sbjct: 453 K 453 >UniRef50_A1ALJ3 Sigma-54 factor, interaction domain-containing protein n=5 Tax=Desulfuromonadales RepID=A1ALJ3_PELPD Length = 517 Score = 559 bits (1442), Expect = e-157, Method: Composition-based stats. Identities = 185/508 (36%), Positives = 285/508 (56%), Gaps = 12/508 (2%) Query: 185 DNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLD 244 + +T + S L++ + + +F +D +S+ + + + + D Sbjct: 3 NRDEFFREVTVRICSSLEIKTALRSAFTYLREFFPLDMLSLGICDASLSAIRRVAHVTAD 62 Query: 245 KQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLP 304 E V + + ++ + ++++ D + R L + LLP Sbjct: 63 STETHDEIIPVPGQLWASLQRWEMRSPVMVD----SDQSGLVRALAPHLKLDENSGILLP 118 Query: 305 LMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDEN 364 L SG+ MLG L L F ++ LL +A+ IA+ NALA++++ R ++ L+D+N Sbjct: 119 LWSGEGMLGWLTLYAWGAGRFDAGHVALLATVADPFVIALANALAHEKLLRYRDNLIDDN 178 Query: 365 LALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHN 424 L+++L EI+G + + V++ V VA ++TVL+LGETGTGKELIA AIH+ Sbjct: 179 RFLSKELFTQGG--DEIVGANLGLRHVMEMVRQVAPLNNTVLLLGETGTGKELIANAIHS 236 Query: 425 LSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGD 484 S R + ++K+NC A+P L++S+LFGHE+GAFTGA +R GRFE AD ++FLDE+G+ Sbjct: 237 ASPRKDGPLIKVNCGAIPEQLIDSELFGHEKGAFTGAVTERRGRFERADGGTIFLDEIGE 296 Query: 485 MPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNV 544 +PL+ Q +LLRVLQ E +R+G ++ I D+R+IAAT+R+L+ M+A+ FR DL++RLNV Sbjct: 297 LPLQAQVRLLRVLQNHEIDRVGGSRPIPVDIRVIAATHRNLESMIAENRFREDLWFRLNV 356 Query: 545 FPIHLPPLRERPEDIPLLAKAFTFKIARRLGR-NIDSIPAETLRTLSNMEWPGNVRELEN 603 FP+ +PPLR+R EDIP L + F + R LG + I L L WPGNVRELEN Sbjct: 357 FPLFIPPLRQRREDIPGLTRHFISQKCRELGMAAMPDIAPGALVRLMEYAWPGNVRELEN 416 Query: 604 VIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGEDE-----YQLIVRVLKETNG 658 ++ER ++L RG LQ P +E E + + RVL T G Sbjct: 417 LVERELILHRGGTLQFDALMPAARRGNAPVQREAPGVEEGLELDQAISRHLRRVLDLTGG 476 Query: 659 VVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 + G GAA+ LG+K +TL R+ RLGI Sbjct: 477 RIHGRGGAAELLGVKPSTLRWRLDRLGI 504 >UniRef50_C9RS71 Transcriptional regulator, NifA subfamily, Fis Family n=5 Tax=Bacteria RepID=C9RS71_FIBSS Length = 509 Score = 557 bits (1437), Expect = e-157, Method: Composition-based stats. Identities = 169/512 (33%), Positives = 268/512 (52%), Gaps = 25/512 (4%) Query: 186 NFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDK 245 ++ I+ A++ D+++L+ V + + + L L I ++ LD+ Sbjct: 10 EISVIQKISVAIIHERDVEKLLENVLGILESELGMLRGTFALLFGDT--LKIEASRGLDE 67 Query: 246 QHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPL 305 + E +T V + +I +D +PL Sbjct: 68 TEKQRGFYRMGEG--ITGHVAERGLSHVIPDLRKDSRFLNRTGSR--HYETQVAFICVPL 123 Query: 306 MSGDTMLGVLKLAQC-EEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDEN 364 + ++G L + + + ++ LL IA A + + E+H +E +++EN Sbjct: 124 IHDGQVIGTLSIDRPVDGSTDLDRDVALLEIIANITGDAANECI---ELHGEREAMLEEN 180 Query: 365 LALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHN 424 L + L + GE++G M V +QV VA SD+TVLI G +GTGKE+IARAI N Sbjct: 181 RKLRDML---SNNPGELVGNCREMRQVYEQVRQVAPSDATVLIRGGSGTGKEMIARAIVN 237 Query: 425 LSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGD 484 LS R ++ + +NCAA+P L+ES+LFGHE+GAFTGA +RIGR E A+ +LFLDEVGD Sbjct: 238 LSARKDKPFITLNCAALPENLVESELFGHEKGAFTGALNRRIGRAEAANGGTLFLDEVGD 297 Query: 485 MPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNV 544 + ++ Q KLLR LQE+ F R+GSN+ + +DVR +AAT+R+L++++A +FR DL+YRLN+ Sbjct: 298 LTMQTQVKLLRFLQERTFSRVGSNEELHSDVRFLAATSRNLEELIAQGKFREDLFYRLNI 357 Query: 545 FPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENV 604 FPI +P L +R DI LLA+ F K+ R + + + + L + WPGNVRELEN Sbjct: 358 FPITMPDLAKRKSDIILLAEHFIEKMNLRYNKKVGRLSTTAINLLMSYHWPGNVRELENC 417 Query: 605 IERAVLLTRGNVLQ-LSLPDIVLPE--------PETPPAATVVALEGEDEYQLIVRVLKE 655 IER VL + + +LP + + A + + E ++I +K Sbjct: 418 IERGVLTATDDCIHSYNLPPSLQTSLSVGSVGGTPSDKIAPLEVMMDNYEREIITEAIKR 477 Query: 656 TNGVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 +G ++ A + LG+ + RM +LGI Sbjct: 478 NDGNIS---AAGRDLGVSPRMMNYRMNKLGIK 506 >UniRef50_Q1D6H5 Sigma-54 dependent DNA-binding response regulator n=7 Tax=Myxococcales RepID=Q1D6H5_MYXXD Length = 474 Score = 557 bits (1436), Expect = e-157, Method: Composition-based stats. Identities = 164/463 (35%), Positives = 241/463 (52%), Gaps = 28/463 (6%) Query: 250 HEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGD 309 + +D+ L + + ++ ++ + + T ++P + G Sbjct: 2 AKVLVIDDEANLRKVLAAMLRRDGFDVTVAENGEQGLAEFHKNGADIVVTDLVMPKVGGM 61 Query: 310 TMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIA----VDNALAYQEIHRLKERLVDENL 365 +LG ++ A + V T + + + + E+ + + N Sbjct: 62 EVLGTIRAANPDVPVIIITAHGTVDSAVDAIKAGAFDYITKPFDQAELSSVVAKAAKTNE 121 Query: 366 ALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNL 425 + + IIG S + V K ++ VA + STVLI GE+GTGKELIA A+H Sbjct: 122 SARRSVRPDVKARAAIIGDSSTIQEVYKIIDKVADTPSTVLITGESGTGKELIATALHGA 181 Query: 426 SGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDM 485 S R ++ +K+NCAA+P LLES+LFG+ERGAFTGA + GRFELAD+ +LFLDE+G++ Sbjct: 182 SSRRDKPFIKINCAAIPHTLLESELFGYERGAFTGAVTSKPGRFELADEGTLFLDEIGEI 241 Query: 486 PLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVF 545 P+E+Q KLLR +QE EFER+G K + DVRL+AATNRDL+ + FR DLYYRL V Sbjct: 242 PVEMQVKLLRAIQEGEFERVGGIKTTRVDVRLVAATNRDLQAEIEAGRFRKDLYYRLAVV 301 Query: 546 PIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVI 605 PI LP LRER D+P+LA+ F K RRL + I+ I + + L WPGN+RELEN+I Sbjct: 302 PISLPALRERRSDVPMLARHFVEKYNRRLNKKIEGIADDAMALLQGYAWPGNIRELENLI 361 Query: 606 ERAVLLTRGNVLQL-SLPDIVLPEPETPPAATVVALE--------------------GED 644 ER +L G ++ LP+ V A + + E Sbjct: 362 ERVLLFADGPLITARDLPEPVRQGTGVQAGANLASAVASIDVPTGEVGLKDIVRMKAAEL 421 Query: 645 EYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 E LIV+ L+ET G V AA+ L + R +L ++MK G+ Sbjct: 422 ERDLIVKKLEETGGNV---TRAARLLQISRKSLQTKMKEFGLR 461 >UniRef50_C8WZC4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8WZC4_DESRD Length = 448 Score = 557 bits (1435), Expect = e-157, Method: Composition-based stats. Identities = 170/473 (35%), Positives = 246/473 (52%), Gaps = 41/473 (8%) Query: 224 SIVLRSHRKNKLNIYSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLA 283 I+L N L + S + +E + + + + +LI Sbjct: 6 RILLIDDEPNTLKVLSAFLTKE---GYEVGTAKDGRSGLNHLQEGGWDMLI--------- 53 Query: 284 PYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIA 343 T LP ++G +L +K + V T + + + + Sbjct: 54 ---------------TDLKLPDITGLDILEQVKATWPKLPVVMITAYGSISNAVQAMKLG 98 Query: 344 VDNAL----AYQEIHRLKE------RLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLK 393 N L E+ L + +L++EN + QL + G ++G+S+AM + Sbjct: 99 AFNYLTKPVDPDELLLLVQNVFERSQLLEENQTMRRQLRD-RYSLGNMVGKSKAMQELFN 157 Query: 394 QVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGH 453 +E VAQ ++ VL+ GETGTGKEL+AR IH N V ++CAA+P LLES+LFGH Sbjct: 158 LIEKVAQYEANVLVTGETGTGKELVARGIHYAGQEENLPFVPIDCAAVPETLLESELFGH 217 Query: 454 ERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQT 513 RGAFTGA+ Q+ G+ ELA +LFLDE+G++PL LQ K LR LQE+E RLG + + Sbjct: 218 SRGAFTGAAEQKKGQIELAHGGTLFLDEIGELPLALQKKFLRFLQEKEIVRLGETRRRKV 277 Query: 514 DVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARR 573 DVR+IAATNRDL+ +A ++R DL+YRLNV I +PPLRER +DIP L F K + Sbjct: 278 DVRIIAATNRDLEAEIAAGQWREDLFYRLNVISIEIPPLRERRDDIPPLVNHFLAKYNAQ 337 Query: 574 LGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPP 633 G+ I + E + +WPGNVRELENVIERAV+L G+ + +S L E P Sbjct: 338 NGKAIQGMTGEVMEVFMAYDWPGNVRELENVIERAVVLCMGDSIAMSCLPPKLQERSAPA 397 Query: 634 AATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 +T E E +LIV+ L++T AA+ LG+ R L ++MK G+ Sbjct: 398 PSTDGVNLMEMEKRLIVQTLEKTE---QNQSAAARELGISRKQLRTKMKHHGL 447 >UniRef50_C3X424 Transcriptional regulator containing GAF n=2 Tax=Oxalobacter formigenes RepID=C3X424_OXAFO Length = 540 Score = 557 bits (1435), Expect = e-157, Method: Composition-based stats. Identities = 226/520 (43%), Positives = 314/520 (60%), Gaps = 12/520 (2%) Query: 182 RERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTH 241 + D F LV +T+AV++ D+ L + A +H +F +D IS+ +LN+ + Sbjct: 18 HDHDFFHFLVDLTDAVIAATDIPCLAEKTADYLHEFFGLDYISLETYEPASFRLNVQAIR 77 Query: 242 YLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLC 301 + + + TL + +E +L N + A + G+ +Q L Sbjct: 78 FEQGKRRLYNSFSKPLHATLLGAALRKQEKILFNRNAILSNAAKYPYVARLAGDGLQVLL 137 Query: 302 LLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLV 361 LPL+S +LG L + + FT + LL +I+ R+A+A+D L++++ Sbjct: 138 YLPLVSAGNLLGTLGVGSFKPCHFTPETMALLNRISARLAVALDVMLSHRKKTAPASVSP 197 Query: 362 DENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARA 421 +E+ + + +IG S A+ S+L+Q+E+VA S++TVL+ GETGTGK LIA+ Sbjct: 198 NESPITGDNIEET-PPPHHLIGHSVAIQSILQQIEIVASSNATVLLQGETGTGKGLIAQT 256 Query: 422 IHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDE 481 IHNLS R R MVKMNC A+P+ L+ES+LFGHE+GAFTGA +RIG FE ADKS+LFLDE Sbjct: 257 IHNLSDRKARDMVKMNCTAIPSELMESELFGHEKGAFTGALNKRIGHFEQADKSTLFLDE 316 Query: 482 VGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYR 541 +GDMPL+LQPKLL VLQE + RLGS I DVR IAATN DL + D+ FRSDL+YR Sbjct: 317 IGDMPLDLQPKLLSVLQEHQIRRLGSPHTISVDVRCIAATNCDLVAKIEDKTFRSDLFYR 376 Query: 542 LNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVREL 601 LNVFPI +PPLRER EDIP LA+ F K AR + R+I IP+ETL ++ + WPGN+REL Sbjct: 377 LNVFPITVPPLRERAEDIPSLARFFIRKYAREMNRHITGIPSETLALMTRLPWPGNIREL 436 Query: 602 ENVIERAVLL-TRGNVLQLSLPDIVLPEP---------ETPPAATVVALEGEDEYQLIVR 651 ENV+ERAV+L ++G VL LS P+ +L + V E + +V Sbjct: 437 ENVMERAVILTSQGGVLNLS-PESLLSYTTQNSPLTVHASSQPVVPVPAIPETDKDTLVN 495 Query: 652 VLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSAL 691 L+ET G + G GAA RLGLKRTTLL+R+KR GI+ Sbjct: 496 ALRETGGQIGGKTGAAARLGLKRTTLLARLKRFGINADDF 535 Score = 54.5 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 22/162 (13%), Positives = 56/162 (34%), Gaps = 6/162 (3%) Query: 14 LFDITRTLLQQPDLASLCEALSQLVKRSALADNAAIVLWQAQTQRASYYASR-EKDTPIK 72 L D+T ++ D+ L E + + D ++ ++ + R + A R E+ Sbjct: 26 LVDLTDAVIAATDIPCLAEKTADYLHEFFGLDYISLETYEPASFRLNVQAIRFEQGKRRL 85 Query: 73 YEDETVLAHGPVRSI-LSRPDTLHCSYEEFCET---WPQLDAGGLYPKFGHYCLMPLAAE 128 Y + H + L + + + + +P + +PL + Sbjct: 86 YNSFSKPLHATLLGAALRKQEKILFNRNAILSNAAKYPYVARL-AGDGLQVLLYLPLVSA 144 Query: 129 GHIFGGCEFIRYDDRPWSEKEFNRLQTFTQIVSVVTEQIQSR 170 G++ G + ++ + L + ++V + + S Sbjct: 145 GNLLGTLGVGSFKPCHFTPETMALLNRISARLAVALDVMLSH 186 >UniRef50_C7PEX2 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PEX2_CHIPD Length = 653 Score = 556 bits (1434), Expect = e-157, Method: Composition-based stats. Identities = 193/540 (35%), Positives = 299/540 (55%), Gaps = 24/540 (4%) Query: 166 QIQSRVVNNVDYELLCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISI 225 I N L RE+ + L I + + ++ + ++ + + + D + I Sbjct: 117 DIARYKHQNNLQMALQREQLMQKQLQQI---IEAPFELADKIARIPDVLQTFVPFDYLHI 173 Query: 226 VLRSHRKNKLNIYSTHYLDKQHPAH-------EQSEVDEAGTLTERVFK-----SKEMLL 273 + R + L S H + ++ LT R+ + + Sbjct: 174 AITGKRPHTLEDLSFQRTGFDEYEHLDNTALCKSLGLERNTILTGRIAQLENETGGYLSD 233 Query: 274 INLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLL 333 + +E L D + + L +G+ L V+ +T LL Sbjct: 234 AEFRQWIADKIWESKLSDHLRLNARLAIAVTLPAGN--LAVISFYSRNADTYTEELFTLL 291 Query: 334 RQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLK 393 ++ + ++ + L R+V + + L + + F I+GRS SVL Sbjct: 292 GRMENGIRQLLEQIQQKND--ALSARIVARKR-VEKPLIDNEVLFEGIVGRSPVFLSVLH 348 Query: 394 QVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGH 453 + MV+ + S+VLILGE+GTGKELIAR IH S R N+ ++ +NCAA+PA L+ES+LFGH Sbjct: 349 SINMVSAAPSSVLILGESGTGKELIARCIHRQSPRKNKPLITVNCAALPAELIESELFGH 408 Query: 454 ERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQT 513 E+GAFTGA+ +R G+FE+AD ++FLDE+G++P+E Q KLLRVLQE+EFER+G +K+I+ Sbjct: 409 EKGAFTGATDKRAGKFEMADGGTIFLDEIGELPIESQVKLLRVLQEKEFERVGGSKVIKV 468 Query: 514 DVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARR 573 DVR+IAATNR+L+K VA+ FR DLYYRLNVFP+ LP LRER EDIPLLA+ F K++ + Sbjct: 469 DVRVIAATNRNLEKEVAEGRFRLDLYYRLNVFPVELPSLRERKEDIPLLAQHFVDKLSEK 528 Query: 574 LGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPE--- 630 L RNI I + L+ L + +WPGN+RE+E+V+ER++L+T G +L+ + + +P Sbjct: 529 LSRNITDISPDALKALRSYDWPGNIREMEHVMERSLLMTTGTILKQIMLPKMAAQPVGTT 588 Query: 631 -TPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKS 689 + + E E + I++VLK G V G GAA+ LGL +TL S++++LGI + Sbjct: 589 ISSADGNRIKTLEEMEIEHILQVLKSCKGKVCGVGGAAELLGLPPSTLNSKIRKLGIKRD 648 >UniRef50_B3DZA5 Transcriptional regulator NifA, contains GAF, AAA-type ATPase, and DNA binding domains n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DZA5_METI4 Length = 529 Score = 556 bits (1433), Expect = e-156, Method: Composition-based stats. Identities = 171/540 (31%), Positives = 260/540 (48%), Gaps = 42/540 (7%) Query: 182 RERDNFRILVAITNAVLSRLDMD-ELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYST 240 ++ F + I+ + S + + E K ++ + + I +R + L + Sbjct: 2 KKNGEFVAIYEISKILTSSQPLLFQSFRESLKILNIHLKLQKSLIFIRKGQDPIL--LAG 59 Query: 241 HYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTL 300 D+ E+V K+ +++ ++ + + + +L Sbjct: 60 CGNDQADNHFSFYYF-----FIEQVLKNGFPIVVPDIHKEPYFSSDISHEEDGTEEPISL 114 Query: 301 CLLPLMSGDTMLGVLKLAQCEEKVF--TTTNLNLLRQIAERVAIAVDNALAYQEIHRLKE 358 LP+ +GVL + E + L + ++ + + Sbjct: 115 FCLPIRYERECIGVLVCEKKRESALEPLSETTLTLSLATNLFGQKIKLSMDNFKPIPFPQ 174 Query: 359 RLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELI 418 L + + G +IG+S+ M +V+ V VA S STVL+ GE+GTGKE+I Sbjct: 175 SLELPPPPRKNGDIQLKNN-GGVIGQSKQMQAVMDLVYHVAPSRSTVLLRGESGTGKEVI 233 Query: 419 ARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLF 478 AR IH LS R +K+NC+A+P +LES+LFGHE+GAFTGA +R GRFELA +LF Sbjct: 234 ARTIHYLSPRKEGPFIKVNCSALPETILESELFGHEKGAFTGALFERKGRFELAHGGTLF 293 Query: 479 LDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDL 538 LDE+GD+ +Q KLLRVLQE+EFER+G NK I+ DVR+I ATN++L++ V EFR+DL Sbjct: 294 LDEIGDISPAVQVKLLRVLQEREFERVGGNKTIRVDVRVITATNKNLEEAVLKGEFRADL 353 Query: 539 YYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNV 598 Y+R+NV I LPPLRER EDIPLLA KI + L R + I E L+ L N WPGNV Sbjct: 354 YFRINVVSISLPPLRERKEDIPLLADHILNKIGKELNRKL-RITPEALKLLINCHWPGNV 412 Query: 599 RELENVIERAVLLTRGNVLQLSLP---------------------------DIVLPEPET 631 RELEN +ERA +R N + + ET Sbjct: 413 RELENCLERAATNSRNNWIDEIDVACRRNQCSSPMLWKKELQVISTPVVSSEEAKSREET 472 Query: 632 PPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSAL 691 P ++ L +D + I++ +++ V AA+ L + L +K+ GI+ Sbjct: 473 PRSSFFSPLISDDPKEKIIQAMEKCGWV---QAKAARLLNITPRQLGYALKKYGIEIKKF 529 >UniRef50_Q1D5E1 Sigma-54 dependent transcriptional regulator, Fis family n=4 Tax=Myxococcales RepID=Q1D5E1_MYXXD Length = 529 Score = 556 bits (1433), Expect = e-156, Method: Composition-based stats. Identities = 178/517 (34%), Positives = 267/517 (51%), Gaps = 38/517 (7%) Query: 188 RILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQH 247 ++L+ V +D+D + + I D ++ L + +L + H Sbjct: 29 QVLLPFGGLVGREVDLDAFLQTLMDRIAITLQADRGTLWLLDPARRELFSRAAHL----- 83 Query: 248 PAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMS 307 P Q V + V K+ + + + + + G + +L +PL Sbjct: 84 PEVSQIRVKLGQGVAGTVAKAGHAINVPDPRGEQRFFAD--IDRMTGYRTTSLLAVPLRD 141 Query: 308 GDTML-GVLKLA-QCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENL 365 GD L GVL++ + E FT + L IA +V+ A+ + YQE+ R KE+ Sbjct: 142 GDGALYGVLQVLNRRGEDRFTDEDTQRLTAIASQVSTALQSTSLYQELQRAKEQ------ 195 Query: 366 ALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNL 425 V F IIG S + ++ + V A +D+TVL+ GE+G+GKEL ARA+H Sbjct: 196 ----PQVPVGYFFNRIIGESPQLQAIYRLVRKAAPTDATVLLRGESGSGKELFARAVHVN 251 Query: 426 SGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDM 485 R ++ +K++CAA+PA L+E++LFGHERGAFTGA + G+FE A ++F+DE+G++ Sbjct: 252 GPRRDQPFIKVDCAALPATLIENELFGHERGAFTGADHRVPGKFEAASGGTVFIDEIGEL 311 Query: 486 PLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVF 545 PL +Q KLLRV+Q++EFER+G + ++ DVR++AAT+RDL +MVA+ FR DLYYR+ V Sbjct: 312 PLPVQGKLLRVIQDREFERVGGTQAVKVDVRIVAATHRDLARMVAEGRFREDLYYRIKVV 371 Query: 546 PIHLPPLRERP-EDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENV 604 + LPPLRER EDI LA+ F +ARR + A + L WPGNVRELEN Sbjct: 372 EVVLPPLRERGAEDIERLARHFVAAVARRHRLTPPRLSAAAVERLKRYRWPGNVRELENC 431 Query: 605 IERAVLLTRGNVLQLSLP---------------DIVLPEPETPPAATVVALEGEDEYQLI 649 IE AV+L G +L+ LP V P + E E + I Sbjct: 432 IESAVVLCEGEILEEHLPLPDVDRAALPPPAAAQGVNAPTAPAPLDAGLLPLAEVERRHI 491 Query: 650 VRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 +RVL G AA+ L + R TL ++K G+ Sbjct: 492 LRVLDAVKG---NRTAAARVLAIGRNTLARKLKEYGL 525 >UniRef50_B8FB78 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FB78_DESAA Length = 1036 Score = 556 bits (1433), Expect = e-156, Method: Composition-based stats. Identities = 198/549 (36%), Positives = 294/549 (53%), Gaps = 20/549 (3%) Query: 149 EFNRLQTFTQIVSVVTEQIQSRVVNNVDYELLCRERDNFRIL---VAITNAVLSRLDMDE 205 E Q +S V EQ + L R+L ++ N + S D E Sbjct: 500 EAEAAQGMADRLSGVLEQYHEETIPPDLKPLFRTRASAQRLLSGIYSLGNDMASVQDGKE 559 Query: 206 LVSEVAKEIHYYFDIDDISIVLR--SHRKNKLNIYSTHYLDKQHPAHEQSEVDEAGTLTE 263 L+ + ++ + +I + + + ++ L E Sbjct: 560 LLHSILSTVNQLTGAERGAIFVANEDPHGPPMKLRASRNLTADQVERPAFEPSM------ 613 Query: 264 RVFKSKEMLLINLHE--RDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCE 321 R+ + L ++ R + AP E + ++ P++ LGVL Sbjct: 614 RLIQQAASLGVDKKSFIRKESAPPEEWSAGSSEAA-RSSICAPIIFKGKTLGVLYHDNRL 672 Query: 322 -EKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGE 380 F ++ LL A + A A+DNA A +EI RLK R + + + + + + E Sbjct: 673 LNSAFKESDFELLSFFAAQAAAALDNANAQEEIERLK-RAMAQGGRIQSRPSFSRENYKE 731 Query: 381 IIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAA 440 +IG+S+A+ +L +E VA++ S VLILGETG GKEL A A+H S R + VK NC+A Sbjct: 732 VIGKSQAVRKMLHLIEQVAKTGSNVLILGETGVGKELAANAVHYHSKRRGKAFVKANCSA 791 Query: 441 MPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQ 500 + L+ S+LFGHE+GAFTGAS++RIGRFELADK ++FLDE+GD+PL++Q LLRVLQ Sbjct: 792 LTETLINSELFGHEKGAFTGASSRRIGRFELADKGTIFLDEIGDLPLDVQANLLRVLQSS 851 Query: 501 EFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIP 560 EFER+G N+ I++D RLIAATNRDL+++ AD++FR DLYYRLNVFPI +PPLR+R EDIP Sbjct: 852 EFERVGGNETIRSDFRLIAATNRDLERLAADKKFRQDLYYRLNVFPILVPPLRDRKEDIP 911 Query: 561 LLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLS 620 LLA+ F A+++ + I E + L WPGN+REL NVIER ++L+ G + Sbjct: 912 LLAEQFIRGFAQKMQIEVKKISREEMNKLLKYHWPGNIRELANVIERGMILSSGPLFTAP 971 Query: 621 LPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSR 680 + ++ E+E I+ L++ N V GP G A+ L + +TL +R Sbjct: 972 DLEGQTDGHSLHRPHSL----EENERSHILWALEQKNWKVRGPGGVAEFLDINPSTLAAR 1027 Query: 681 MKRLGIDKS 689 MK+LGI + Sbjct: 1028 MKKLGIKRP 1036 >UniRef50_D1TMK5 Transcriptional regulator NifA n=1 Tax=Burkholderia sp. CCGE1002 RepID=D1TMK5_9BURK Length = 548 Score = 555 bits (1430), Expect = e-156, Method: Composition-based stats. Identities = 176/548 (32%), Positives = 250/548 (45%), Gaps = 53/548 (9%) Query: 186 NFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDK 245 +F ++ + + S + + + + I + KL + L Sbjct: 12 DFDVVTEVLKTLDSSRNAEHALKRSLWFLSRARGWRSAFIAVEQPD-GKLGGLCSTGLSD 70 Query: 246 QHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPL 305 E + R+ +S+ +++ + D + + L P+ Sbjct: 71 GW--REGMRFPSGEGIVGRIQESESAVVVPELDGDPMFDDRTGAVRVSNAERVALLGAPI 128 Query: 306 MSGDTMLGVLKL--AQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDE 363 LGVL + K +L LL +A +A AL + V E Sbjct: 129 RHEGRPLGVLVALCENPDGKRVFADDLQLLEVVASPIA----RALLLDREADPSRKSVQE 184 Query: 364 NLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIH 423 ++ + IGRS +M V QV VA + +TVL+ GE+GTGKELIARAI+ Sbjct: 185 EISRRRNAAAPIYQVDWAIGRSASMQHVFAQVHQVAPARTTVLLRGESGTGKELIARAIY 244 Query: 424 NLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVG 483 LS R ++ V +NCAA+ LLES+LFGHE+GAFTGA QR GRFELA +LFLDE+G Sbjct: 245 RLSPRKDQPFVSVNCAALTETLLESELFGHEKGAFTGAQTQRKGRFELAHGGTLFLDEIG 304 Query: 484 DMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLN 543 D+ Q KLLRVLQE+EFER+G ++ DVRLI ATNR+L++MV + EFR+DLYYR+N Sbjct: 305 DISPSFQAKLLRVLQEREFERVGGTTPVRVDVRLIVATNRNLEQMVREGEFRADLYYRIN 364 Query: 544 VFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELEN 603 V I LPPLRER EDIP +A+ F + R GR + E LR LS+ WPGNVRELEN Sbjct: 365 VVSIVLPPLRERREDIPEMAQYFLNRFNRENGRAL-HFNEEALRVLSSCYWPGNVRELEN 423 Query: 604 VIERAVLLTRGNVLQL----------------SLPDIVLPEPETPPAATVVALEG----- 642 IER + + + L P P TV Sbjct: 424 CIERTATMAHHDTIGRSSFLCEIDQCLTKVLHHLEREDAVRPARPSDVTVSNALNVPAKF 483 Query: 643 -------------------EDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKR 683 EDE + ++ ++ V AA+ LG+ + +++ Sbjct: 484 GAPERDAGGLGMHSGEHIPEDERERLLWAMERCGWV---QAKAARLLGITARQIGYALRK 540 Query: 684 LGIDKSAL 691 GI Sbjct: 541 HGIKLRRF 548 >UniRef50_Q3A356 Two component, sigma54 specific, transcriptional regulator, Fis family n=11 Tax=Desulfuromonadales RepID=Q3A356_PELCD Length = 471 Score = 554 bits (1427), Expect = e-156, Method: Composition-based stats. Identities = 179/434 (41%), Positives = 235/434 (54%), Gaps = 27/434 (6%) Query: 276 LHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQ 335 + + +L T I T LP +SG +L +K V T Sbjct: 42 VTTAETGEKALEILSKTPFEVILTDLFLPGVSGIEILKRVKEQWPFTNVILITGKGSAES 101 Query: 336 IAERVAIA----VDNALAYQEIHR------LKERLVDENLALTEQLNNVDSEFGEIIGRS 385 E + + L ++++ K RLV ENL L +QL F IIG S Sbjct: 102 AVEAMKEGAFDYITKPLHFEKLQVIIAKAVEKSRLVAENLYLRQQLRG-KYRFDNIIGNS 160 Query: 386 EAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGL 445 M V ++E V +DST+LILGE+GTGKEL+A+AIH R + V +NC A+PA L Sbjct: 161 LPMQYVFSRMEKVLNTDSTILILGESGTGKELVAKAIHYNGHRREKPFVAINCGAIPAEL 220 Query: 446 LESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERL 505 LES+LFGH RGAFTGA A + G+F+ A + ++FLDE+G MPL LQ KLLRVLQEQE E++ Sbjct: 221 LESELFGHVRGAFTGAVADKTGKFQQAHQGTIFLDEIGTMPLHLQMKLLRVLQEQEVEKV 280 Query: 506 GSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKA 565 GS+K I+ DVR+I+ATN +L++ V FR+DLYYRLNV PI LPPLRER EDI LLA+ Sbjct: 281 GSSKKIKLDVRVISATNCNLEEEVEQGRFRADLYYRLNVIPIALPPLRERREDIALLARY 340 Query: 566 FTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIV 625 F K + + + SI + L N WPGNVRELENVIER V LT + S Sbjct: 341 FLQKTCTEMNQPLISITPGAMNCLENYHWPGNVRELENVIERTVTLTDSIAIGKSDLPAN 400 Query: 626 LPEPE-------------TPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGL 672 + T + + E LI + + GV AA L + Sbjct: 401 ISGSCCEDEDPQISCPRLTESGMDMPEVIAGIERCLIKSAMGLSGGV---KARAASLLNI 457 Query: 673 KRTTLLSRMKRLGI 686 KRTTL+ ++KRLGI Sbjct: 458 KRTTLVEKIKRLGI 471 >UniRef50_UPI00016C5695 DNA-binding protein Fis / transcriptional regulator, Fis family n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C5695 Length = 635 Score = 553 bits (1425), Expect = e-155, Method: Composition-based stats. Identities = 222/663 (33%), Positives = 314/663 (47%), Gaps = 70/663 (10%) Query: 29 SLCEALSQLVKRSALADNAAIVLWQAQTQRASYYASREKDTPIKYEDETVLAHGPVRSIL 88 +L + + + NA + + Q R A +D DE LA P +L Sbjct: 42 EFFRSLVRNLSAATGVPNAFVAEFAEQRTRIRSLAFW-QDGAFLPPDEWELAGTPCEDVL 100 Query: 89 SRPDTLHCSYEEFCETWPQLDAGGLYPKFGHYCLMPL-AAEGHIFGGCEFIRYDDRPWSE 147 + H + E +P+ Y +PL A G + G P Sbjct: 101 AGSFCHHPTG--VSEKFPK------DAGVESYLGVPLRDASGAVLGHLAVFDARPMPPEP 152 Query: 148 KEFNRLQTFTQIVSVVTEQIQSRVVNNVDYELLCRERDNFRILVAITNAVLSRLDMDELV 207 + Q F + +++ +L + FR L DM+ Sbjct: 153 RLLYTFQIFAARAAAELDRL-------RMDRMLRDSEERFRDLFEEAPVAYVHEDME--- 202 Query: 208 SEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQHPAHEQSEVDEAGTLTERVFK 267 + + ++ + + + L P ++ V EA R Sbjct: 203 -------SRFIRANRTALRVLGLKPEEAVGTVGMSLVPDTPDAQRL-VKEAFASIGRGTD 254 Query: 268 SKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTT 327 + ++L + D + + P G VF Sbjct: 255 TGGVVLELRRKDDGRPIWIQWWSR------------PDRGGQ----------FTRTVFID 292 Query: 328 TNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEA 387 +L + R + RL +N+ L E+L F EI+G+S A Sbjct: 293 VTERVL-------------------MEREQARLQQQNVYLQEELKAAH-NFDEIVGQSPA 332 Query: 388 MYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLE 447 + SVL++V VA +DSTVLI GETGTGKEL+ARA+H+ S R + ++K+NCAA+P L+E Sbjct: 333 LVSVLQRVSKVAGTDSTVLITGETGTGKELVARAVHSASPRKAKPLIKLNCAALPTHLVE 392 Query: 448 SDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGS 507 S+LFGHE+GAFTGA A++ GRFELAD +LFLDEVG++ LE Q KLLRVLQE+EFER+G Sbjct: 393 SELFGHEKGAFTGAVARKPGRFELADGGTLFLDEVGELSLEAQAKLLRVLQEREFERVGG 452 Query: 508 NKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFT 567 ++ DVR+IAATNRDL ++V + FR+DL YRLNVFP+ LP LRERP DIPLL + F Sbjct: 453 TAPVKVDVRVIAATNRDLAQLVKEGAFRADLLYRLNVFPVRLPALRERPGDIPLLVRFFV 512 Query: 568 FKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLP 627 K A RLG+ I+ + +TL L +WPGN+RELENVIERA +L+ G L + + + Sbjct: 513 TKFAGRLGKRIERVSGDTLDALVGYDWPGNIRELENVIERAAILSDGPELVIDPDVLPVT 572 Query: 628 EPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 PA E I VL +T V+ GP GAA LGL TL SRMK+LGI Sbjct: 573 RGGAAPAGAGGQSLVAVEADHIRSVLAQTGWVIEGPNGAATVLGLHPNTLRSRMKKLGIL 632 Query: 688 KSA 690 + + Sbjct: 633 RPS 635 >UniRef50_B8FEY3 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Deltaproteobacteria RepID=B8FEY3_DESAA Length = 460 Score = 552 bits (1424), Expect = e-155, Method: Composition-based stats. Identities = 163/433 (37%), Positives = 236/433 (54%), Gaps = 24/433 (5%) Query: 275 NLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLR 334 + ++L + + + T +P M G ++ +K + V T + Sbjct: 27 ETLTANSGLEAIQILEGSDVDLVLTDMKMPGMDGMELMERIKTRDPDLPVLMMTAYGTVD 86 Query: 335 QIAERVAIAVD----NALAYQEIHRLKE------RLVDENLALTEQLNNVDSEFGEIIGR 384 + +++ + R+V EN L +L + FG IIG+ Sbjct: 87 MGMAAMEKGAYSYIWKPFQNEQLILFVKQALAMYRVVQENRLLKNELGD-RYSFGNIIGK 145 Query: 385 SEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 444 S AM ++ + VA +++TVLI GE+GTGKE++A++IH S R + V +NCAA+ Sbjct: 146 SPAMVNIFDTIVKVAPTNATVLIQGESGTGKEMVAKSIHFNSHRKDAPWVAVNCAALAES 205 Query: 445 LLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFER 504 +LES+LFGHE+GAFTGA+A + GRFELAD +LFLDE+G++ LQ KLLRVLQE+ FER Sbjct: 206 ILESELFGHEKGAFTGAAAMKKGRFELADGGTLFLDEIGEISSSLQVKLLRVLQEKTFER 265 Query: 505 LGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAK 564 +G K I+ D+RLIAATNRDLKK V + FR DL+YRLNV PI LPPLRER +DIPLL Sbjct: 266 VGGVKPIEVDIRLIAATNRDLKKEVENSAFREDLFYRLNVLPIQLPPLRERQKDIPLLVD 325 Query: 565 AFTFKIAR--RLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLP 622 F K A + + + R WPGNVRELENVIERA++L + + ++ Sbjct: 326 HFLQKYASGPSGESRVRKVHPDVHRLFQEYAWPGNVRELENVIERAIILCNSDAISVNDL 385 Query: 623 DIVLPEPET--------PPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKR 674 L + P AT+ E +I R + ++ V AAQ LG+ + Sbjct: 386 PRELTRSVSNTLHMEGIPVDATLYETLSMVEQAMIKRAMLMSDNV---QSHAAQILGIGK 442 Query: 675 TTLLSRMKRLGID 687 + L ++K+ G+D Sbjct: 443 SGLNQKIKKFGLD 455 >UniRef50_P30667 Nif-specific regulatory protein n=6 Tax=Bacteria RepID=NIFA_AZOBR Length = 625 Score = 552 bits (1423), Expect = e-155, Method: Composition-based stats. Identities = 165/445 (37%), Positives = 243/445 (54%), Gaps = 10/445 (2%) Query: 182 RERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTH 241 + ++ + S LD+ + + EV + + Y + + L N L + + + Sbjct: 9 TSNLELLTIYEVSKILGSSLDLQQTLREVLRALAYQLQMHRGRVYLVGED-NVLRLVAAN 67 Query: 242 YLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLC 301 L + A Q E + +T R+ K+ ++ + L + Q+ +L Sbjct: 68 GLSNE--AAAQIEFRDGEGITGRILKTGMPAVVPNLAEEPLFLNRTGGREDLDEQVASLV 125 Query: 302 LLPLMSGDTMLGVLKLAQ---CEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKE 358 +P+ + ++GVL + + + +++ L +A + V E R Sbjct: 126 GVPIKAAGVVVGVLTIDRISDEGPQGHFGSDVRFLTMVANLIGQTVRLHRTVAEERRFMM 185 Query: 359 RLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELI 418 R E + ++L V + +++ S M V+ QV VA STVLI GE+GTGKELI Sbjct: 186 R---ETFRMQKELRPVAAPINDVVCTSPNMLEVMAQVHRVAPFKSTVLIRGESGTGKELI 242 Query: 419 ARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLF 478 ARAIHN+S R + +++NCAA+P LLES+LFGHE+GAFTGA GRFELA +LF Sbjct: 243 ARAIHNMSPRKDAPFIRVNCAALPESLLESELFGHEKGAFTGAQKDHKGRFELASGGTLF 302 Query: 479 LDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDL 538 LDE+GD+ Q KLLRVLQEQEFER+G +K I+TDVRLI ATN +L++ V +FR+DL Sbjct: 303 LDEIGDISPNFQAKLLRVLQEQEFERVGGSKTIKTDVRLICATNLNLEEAVGHGKFRADL 362 Query: 539 YYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNV 598 Y+R+NV IHLPPLRER +DI LA+ F K A+ G + + E L L+ WPGNV Sbjct: 363 YFRINVVTIHLPPLRERRQDIGPLARHFVAKFAKDNGMALV-MEDEALEVLNRCTWPGNV 421 Query: 599 RELENVIERAVLLTRGNVLQLSLPD 623 RELEN IERA +R +++ Sbjct: 422 RELENCIERAATQSRDGIIRTESLS 446 Score = 48.7 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 9/56 (16%), Positives = 20/56 (35%), Gaps = 7/56 (12%) Query: 640 LEGEDE----YQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSAL 691 E E ++ ++ T V AA+ LG+ + +++ I+ Sbjct: 573 PLDEPESGSLRDRLLWAMERTGWV---QAKAARLLGMTTRQVSYALRKYNIEIKRF 625 >UniRef50_B5YL21 Acetoacetate metabolism regulatory protein AtoC n=3 Tax=Bacteria RepID=B5YL21_THEYD Length = 446 Score = 552 bits (1423), Expect = e-155, Method: Composition-based stats. Identities = 158/436 (36%), Positives = 242/436 (55%), Gaps = 11/436 (2%) Query: 254 EVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLG 313 E+ ++ + K + + + + +L T I LP M G +L Sbjct: 10 EISALKAISAILRKEGYTVFTSTTAEEGM----EVLKTTTIECILLDYRLPGMDGIDLLR 65 Query: 314 VLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAY---QEIHRLKERLVDENLALTEQ 370 LK + T + + E + + + L E+ + E ++ Sbjct: 66 WLKHCEMSIPTVMLTAYGTIEKAVEAMKLGAYHYLIKPVDTELLLNVIKEAIEKSKGIQK 125 Query: 371 LNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNN 430 L +++ F EIIG+S+ + + ++MVA+S++ VLI GE+GTGKEL+ARAIH S R + Sbjct: 126 LEKIETPFPEIIGKSKTIQEIFYIMQMVAESNANVLITGESGTGKELVARAIHKNSLRKS 185 Query: 431 RRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQ 490 + + ++C +P LLES+LFGHE+GAFTGA+ ++ G ELA++ ++FLDE+G++P+ LQ Sbjct: 186 KPFIIVDCTTIPENLLESELFGHEKGAFTGATERKTGLIELANEGTVFLDEIGELPMLLQ 245 Query: 491 PKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLP 550 KLLR LQE+E +R+GS + I+ DVR+I+ATN+DL+K + + FR DLY+RLNV I+LP Sbjct: 246 KKLLRFLQEKEIQRIGSTQRIKVDVRVISATNKDLEKAIKEGSFREDLYWRLNVVRINLP 305 Query: 551 PLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVL 610 PLRER EDIPLL F K ++ + I + E + L N WPGN+REL NVIERAV+ Sbjct: 306 PLRERKEDIPLLVNHFLNKFSKENNKPIPQLEPEVMNALINYYWPGNIRELANVIERAVV 365 Query: 611 LTRGNVLQL-SLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQR 669 L+ ++ + LP + E E LI++ L T AA+ Sbjct: 366 LSPSGLISIKHLPRRIQENTGWTIIKENTFNLLEVEKALILKALNSTGW---NQTKAAEI 422 Query: 670 LGLKRTTLLSRMKRLG 685 LG+ R L ++MK G Sbjct: 423 LGISRKQLRTKMKHHG 438 >UniRef50_C8X5C3 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X5C3_DESRD Length = 521 Score = 552 bits (1422), Expect = e-155, Method: Composition-based stats. Identities = 173/510 (33%), Positives = 268/510 (52%), Gaps = 10/510 (1%) Query: 185 DNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLD 244 + + S LD+D+ + + + + D + + + L + Sbjct: 4 SHESFFREAVLRICSSLDIDKALERCLEYVKQFIPADSMHLSVYLPDVQMLQFVAVAGEG 63 Query: 245 KQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLP 304 + + V + + +++ + E +L + ++ ++ Sbjct: 64 YEVTNADAISVPAIDWEAPENQRPGMPFVHVVNDPANEPEVETVLHQLNLSSDFSVMVMH 123 Query: 305 LMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDEN 364 L + +G + + +T + L + E ++IA+ NAL ++E+ RL E L D++ Sbjct: 124 LYLDGSSIGEVAVRSQGTHKYTEEHGRLFVLLREPLSIALANALKHREVVRLNELLADDS 183 Query: 365 LALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHN 424 ++L + E++G + V++Q + VAQ D+ VL+LGETG GK +IA IH Sbjct: 184 RYFQQELRAKQGQ--EVVGAEFGLRGVMEQAQQVAQLDNPVLLLGETGCGKGMIADTIHK 241 Query: 425 LSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGD 484 LS R M+ +NC A+PA LLES+LFGHE+GAFTGA Q+ GRFE A ++FLDE+G+ Sbjct: 242 LSRRAQGPMITVNCGAIPASLLESELFGHEKGAFTGAERQKRGRFERAQGGTVFLDEIGE 301 Query: 485 MPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNV 544 +PLE Q KLL VLQ +E ER+G ++ I D+R+IAATNRDL MV+ +FR DL+YRLNV Sbjct: 302 LPLESQVKLLHVLQHKEIERVGGSQTIALDIRIIAATNRDLAGMVSSGQFREDLWYRLNV 361 Query: 545 FPIHLPPLRERPEDIPLLAKAFTFKIARRLGRN-IDSIPAETLRTLSNMEWPGNVRELEN 603 FP+ +PPLR+R EDIP L + F A L +P+ L L WPGNVRELEN Sbjct: 362 FPVMVPPLRQRKEDIPALVRYFLQHKAVELKLPSRPKLPSGALDKLMAYHWPGNVRELEN 421 Query: 604 VIERAVLLTRGNVLQLS-LPDIVLPEP------ETPPAATVVALEGEDEYQLIVRVLKET 656 IERA++ T G L++ L D +L E + + + I + L+ Sbjct: 422 FIERALIQTPGGELEIDSLLDNLLQTDGTRGSWEPEVNSNQLPSLETVCAEHIRKALRRA 481 Query: 657 NGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 G ++GP GAA+ LG+ TL RM ++GI Sbjct: 482 GGKISGPGGAAEMLGVHPNTLRQRMDKMGI 511 >UniRef50_Q311G4 DNA-binding protein Fis / transcriptional regulator, Fis family n=10 Tax=Desulfovibrionales RepID=Q311G4_DESDG Length = 576 Score = 551 bits (1420), Expect = e-155, Method: Composition-based stats. Identities = 153/530 (28%), Positives = 258/530 (48%), Gaps = 20/530 (3%) Query: 171 VVNNVDYELLCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSH 230 ++N ++ + + L I + + + + + + + +V+ Sbjct: 49 IMNQINTQDSRL-QPYLGTLQRIVSDMGPQRPFQSSLKSLLRTLAENHHFKRPHLVIFDP 107 Query: 231 RKNKLNIYSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLF 290 L + TH K E +T +VF S + +++ + + Sbjct: 108 ETQTLKLSLTHDPTKAQ----DVEYSPGVGVTGQVFSSGQPVIVPRMKDHPSFLNKAFGR 163 Query: 291 DTWGNQIQTLCLLPLMSGDT------MLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAV 344 +P++ ++G L + + + Q+ + + Sbjct: 164 SEEELATLGFICVPVLGPGEEASPREVIGTLSVDTPITDLPSLEGQCRFLQVVAGM---I 220 Query: 345 DNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDST 404 N AY + +++ + + + + I+ S++M VL QV V S +T Sbjct: 221 ANQAAYLQEEMARQKHMMTQGLIGGDVAENTVQAANIVAASKSMRLVLNQVAQVGPSRAT 280 Query: 405 VLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQ 464 L+ GE+GTGKEL+A AIH S R + ++K+NCAA+P+ L+ES+LFG+++GAFTGA Sbjct: 281 ALLRGESGTGKELLAEAIHQASPRRDMPLIKLNCAALPSDLVESELFGYQKGAFTGAVQN 340 Query: 465 RIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRD 524 + G FELA K +LFLDE+G++ Q K+LR +QEQE +RLGS + I DVRLI AT++ Sbjct: 341 KKGLFELAHKGTLFLDEIGELSASAQAKVLRAIQEQEIQRLGSEQTISVDVRLICATHQH 400 Query: 525 LKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAE 584 L+++V FR DLYYR+NVFP+ +PPLRER EDI +A+ F + A ++I I Sbjct: 401 LEELVESGSFREDLYYRINVFPVFIPPLRERREDILPVAEHFLKEYAEEYQKSIKRISTP 460 Query: 585 TLRTLSNMEWPGNVRELENVIERAVLLTRGNVL-QLSLPDIVLPEPETPPAATVV--ALE 641 + L+ WPGN+REL+N IERAVL+ V+ +P + T +++ Sbjct: 461 AIDLLTQYHWPGNIRELKNCIERAVLVCDEQVIRTYHMPPSLQTAESTATDSSLSFCEAV 520 Query: 642 GEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSAL 691 + E +L+V LK+ G + AA+ L + + ++K+ GID Sbjct: 521 AKFEQELLVDALKKARGNML---QAARDLRVSYRIVNYKVKKYGIDAKKF 567 >UniRef50_Q1D4K8 Sigma-54 dependent DNA-binding response regulator n=3 Tax=Myxococcus RepID=Q1D4K8_MYXXD Length = 471 Score = 551 bits (1420), Expect = e-155, Method: Composition-based stats. Identities = 156/424 (36%), Positives = 227/424 (53%), Gaps = 17/424 (4%) Query: 275 NLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLR 334 + E + A + + + T +P M G T+L + + T + Sbjct: 29 EVAEAANGAEALARIGEFSPAVVLTDVRMPQMDGLTLLKTAREQGSDATFVMMTAFASVE 88 Query: 335 QIAERVAIAVDNALAY----------QEIHRLKERLVDENLALTEQLNNVDSEFGEIIGR 384 E + DN L K L E AL +Q+ + F +IIG Sbjct: 89 TAVEAMKSGADNFLLKPLDADQVLVTLGKVLEKRSLRQEAEALRDQVRSRVRRFHDIIGE 148 Query: 385 SEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 444 S + + + A + +TVLILGE+GTGKELIA+A+H S R ++ ++++CAA+ Sbjct: 149 SPQLQGIYDVIRRAAGTRATVLILGESGTGKELIAQALHQESPRKDKPFIRVHCAALSEN 208 Query: 445 LLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFER 504 LLES+LFGHE+G+FTGA A++ GRFELAD +LFLDE+G++ +Q KLLRVLQ++EFER Sbjct: 209 LLESELFGHEKGSFTGALARKEGRFELADGGTLFLDEIGEISPAVQVKLLRVLQQREFER 268 Query: 505 LGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAK 564 +G + ++ DVR++AAT+RDL V FR DLYYRLNV + LPPLR+R D+P L Sbjct: 269 VGGTQTLKVDVRIVAATHRDLVAEVKAGRFREDLYYRLNVVSVTLPPLRDRKSDVPALVN 328 Query: 565 AFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDI 624 F K + G+ + + TL+ L + +WPGN+RELEN IERAV+L +G L Sbjct: 329 HFLEKYSDSYGKQVRGLAPGTLQALLSHDWPGNIRELENAIERAVVLAQGQELSTDDLPP 388 Query: 625 VLPEPETPPAATVV----ALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSR 680 VL P +T A E + I+R L+ G + AA+ LG+ + R Sbjct: 389 VLRGPRPHGTSTGALIPGATLAAIEREAILRTLEMVQGSTS---RAAEVLGISVRKIQYR 445 Query: 681 MKRL 684 +K Sbjct: 446 LKEY 449 >UniRef50_C5S9Z4 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5S9Z4_CHRVI Length = 552 Score = 550 bits (1419), Expect = e-155, Method: Composition-based stats. Identities = 199/545 (36%), Positives = 301/545 (55%), Gaps = 19/545 (3%) Query: 157 TQIVSVVTEQIQSRVVNNVDYELLCRERDNFRILVAITNAVLSRLDMDELVSEV---AKE 213 + S V + R + E+ ER F L+ +A+ + L + +++E+ Sbjct: 16 ARPASGVPPFMVDRRRPSNATEVSLAERLAFERLLGDLSALFANLPPERVIAEIEAALAR 75 Query: 214 IHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLL 273 + + D S + + + + + + V +S ++L+ Sbjct: 76 LVDFLGFDRSSFGEFRDEDSPIEVLCS--VARNGIETTPLGVGLPLPWYFGALRSGQLLV 133 Query: 274 INLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNL- 332 + D E + + +++ +PL G ++GV+ + +L + Sbjct: 134 LPDLPADLPPEAEIEAEFSRQSGLRSNLSIPLRVGGRVMGVIAFSAFHRTRAWPEDLIVR 193 Query: 333 LRQIAERVAIAVDNAL-------AYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRS 385 L+ + E A A+ + A EI RLKERL EN L + + + RS Sbjct: 194 LKIVGEVFAQALARSRRETELAAALAEITRLKERLEAENSYLRQ--SGCARPAQMLASRS 251 Query: 386 EAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGL 445 VL ++ A +++TVL+LGETGTGKE++A +H LS R R ++K+NCAA+PA L Sbjct: 252 PRFNQVLDEIAQAAPTNATVLLLGETGTGKEVLADTLHALSQRRERPLIKVNCAALPASL 311 Query: 446 LESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERL 505 +E++LFG E+GA+TGA A++ GRFELAD SLFLDEVG++PLELQ KLLRVLQ+ FER+ Sbjct: 312 IETELFGREKGAYTGALARQPGRFELADGGSLFLDEVGELPLELQAKLLRVLQDGVFERV 371 Query: 506 GSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKA 565 G + I+ DVRLIAATNR+L + V FR DL+YRLNVFP+ LPPLRER EDIP LA Sbjct: 372 GGTRTIRVDVRLIAATNRNLARAVQAGGFREDLFYRLNVFPVTLPPLRERREDIPWLAWE 431 Query: 566 FTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIV 625 F + +G+ I+ + ++++ L + WPGNVREL N+IERA++L RG L ++L Sbjct: 432 FIKHFSDSMGKPIEHVAEDSMQALLDYHWPGNVRELRNLIERAMILARGPTLHVAL---- 487 Query: 626 LPEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLG 685 P T T ++E I+++L++T+ + G GAA+RLGLK TTL SRMKRLG Sbjct: 488 ECAPATTTRPTATDTLADNERAHILQILEQTHWRIRGAGGAAERLGLKPTTLESRMKRLG 547 Query: 686 IDKSA 690 + +S Sbjct: 548 LSRSG 552 >UniRef50_D2QGL7 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Flexibacteraceae RepID=D2QGL7_9SPHI Length = 488 Score = 550 bits (1418), Expect = e-155, Method: Composition-based stats. Identities = 193/486 (39%), Positives = 282/486 (58%), Gaps = 28/486 (5%) Query: 223 ISIVLRSHRKNKLNIYSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDL 282 +I++ N +++ Y ++ + + E+ + L++ + Sbjct: 11 STILIVDDVPNNISVL---YETLTRSGYKVLVARDGKSAIEQATFALPDLILLDIMMPGM 67 Query: 283 APYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNL---------- 332 +E Q + +L + + + + + T L Sbjct: 68 DGFETCRRLKQNPATQPIPVLFMTALSETIDKVNGFNMGAVDYITKPFQLQEVLSRIHTH 127 Query: 333 ---------LRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIG 383 + Q+ A+ ALA E+ RLK++L EN L E++ F EI+ Sbjct: 128 LSLRRLQQSMEQLVAERTQALTKALA--EVERLKDQLQAENTYLREEIKQTK-NFDEIVT 184 Query: 384 RSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPA 443 +S+A VL+ VE VA +++TVLILGE+GTGKEL+ARA+HNLS R N+ +VK+NCAA+PA Sbjct: 185 QSKAFQKVLRSVEQVAPTNTTVLILGESGTGKELLARAVHNLSSRKNKPLVKINCAALPA 244 Query: 444 GLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFE 503 L+ES+LFGHE+GAFTGA+AQ++GRFELAD ++FLDE+G+MPL+LQ KLLRVLQE EFE Sbjct: 245 TLIESELFGHEKGAFTGATAQKVGRFELADGGTIFLDEIGEMPLDLQAKLLRVLQEGEFE 304 Query: 504 RLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLA 563 R+GS K ++ +VR+IAATNRDL+ A+ FR DLYYRL+VFPI PLR R EDIPLL Sbjct: 305 RVGSTKTMKVNVRVIAATNRDLEIESAEGRFREDLYYRLSVFPIVSLPLRTRKEDIPLLV 364 Query: 564 KAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPD 623 + F K +G+ ID+IPA L TL++ WPGN+RELEN+++RA++++ G L + Sbjct: 365 RHFCAKHGADMGKTIDTIPATVLDTLTDYHWPGNIRELENLVQRALIMSPGRTLVIGD-- 422 Query: 624 IVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKR 683 L + + E E I+ VL+ T+ V+G GAA+ L + TTL SRMK+ Sbjct: 423 -WLRKKPLANQKATLMTMEEAERAHIISVLELTHWKVSGDNGAARLLDMIPTTLDSRMKK 481 Query: 684 LGIDKS 689 LGI + Sbjct: 482 LGIRRP 487 >UniRef50_B5YHF3 Acetoacetate metabolism regulatory protein AtoC n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YHF3_THEYD Length = 455 Score = 550 bits (1417), Expect = e-155, Method: Composition-based stats. Identities = 149/435 (34%), Positives = 231/435 (53%), Gaps = 20/435 (4%) Query: 270 EMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTN 329 DD A +L + LP + G T+L +K + V T Sbjct: 23 RAYGYEATSCDDGAKALSILDSEIFDIAIVDLKLPGVDGLTLLKHIKTISPQTGVIIITA 82 Query: 330 LNLLRQIAERVAIA----VDNALAYQEIHRLKER------LVDENLALTEQLNNVDSEFG 379 ++ + + + +E+ + ER L E L +L EF Sbjct: 83 FAEVKTAVQAIKDGAFDYIAKPFTNEELLLVIERFLKFRTLEKEVKYL-SELVKKKDEFE 141 Query: 380 EIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCA 439 I+ S M + +++ VA++D VLI GE+GTGKELIA AI S R + +K+NCA Sbjct: 142 GIVSTSSVMKEIFDKIDAVAKTDVPVLIQGESGTGKELIANAIQKQSLRKEKPYIKINCA 201 Query: 440 AMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQE 499 A+P L ES+LFG+E+GAFTGA+ + G+FELA+ ++F DE+GDMPL LQ KLLRV+++ Sbjct: 202 AIPETLFESELFGYEKGAFTGATETKKGKFELANGGTIFFDEIGDMPLSLQAKLLRVIED 261 Query: 500 QEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDI 559 RLG + I+ +VR I AT+++LK+++ +FR DL+YR+NV PI +PPL+ER EDI Sbjct: 262 GIVYRLGGKEPIKINVRCIYATSKNLKELIKAEKFREDLFYRINVMPIAIPPLKERKEDI 321 Query: 560 PLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQL 619 P+L + F + + G+ +I L + ++PGNVREL++ IERA+LL++ V+ + Sbjct: 322 PVLIEKFLKIFSEKYGKQNITISPSAYEALLSYDYPGNVRELKHAIERALLLSKDGVIDI 381 Query: 620 -SLPDIVLPEPETP-----PAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLK 673 LP+ P ++ E LI++ L+E AA++LG+ Sbjct: 382 KHLPEEFSPLSSFQKKCFISNFSLKECIENFEKNLIIKALQECGWK---KTEAAKKLGIS 438 Query: 674 RTTLLSRMKRLGIDK 688 R L ++K GI+ Sbjct: 439 RKALWEKIKFYGIEP 453 >UniRef50_C4XRA9 Transcriptional regulatory protein ZraR n=9 Tax=Proteobacteria RepID=C4XRA9_DESMR Length = 462 Score = 549 bits (1416), Expect = e-154, Method: Composition-based stats. Identities = 159/431 (36%), Positives = 225/431 (52%), Gaps = 30/431 (6%) Query: 281 DLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERV 340 D A ++ + + + M G L ++K V T + + + Sbjct: 34 DGAEAVELVRSRPFDAVLLDVRMAGMGGMEALSLIKEYNPAVPVLIMTAYSSVETAVSAL 93 Query: 341 AIAVDNALAY----------QEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYS 390 + L E RL EN L ++L EIIG+S AM Sbjct: 94 KSGAYDYLTKPLDLDVMRLTVERALDHLRLARENENLRQKLGPGVVG-PEIIGKSPAMRE 152 Query: 391 VLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDL 450 + + MVA +++TVL+ GE+GTGKEL+A+A+H S R MV +NCAA+ LLES+L Sbjct: 153 LFSMIAMVAPTEATVLVTGESGTGKELVAKALHAGSPRAGGPMVAVNCAALNETLLESEL 212 Query: 451 FGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKI 510 FGHE+GAFTGA +R GRF ADK S+FLDE+G++ +Q KLLRV+QE+E +R+G ++ Sbjct: 213 FGHEKGAFTGAERRREGRFMAADKGSIFLDEIGEIAPSIQAKLLRVIQEREIQRVGGDRP 272 Query: 511 IQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKI 570 + DVR++AATNRDLKK V FR DLYYRLNV I +PPLRER +DIPLLA+ F + Sbjct: 273 VGVDVRILAATNRDLKKEVEAGRFREDLYYRLNVVAISVPPLRERGQDIPLLAQHFLTRF 332 Query: 571 ARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPE 630 A + + I + L WPGNVRELEN +ERAV+L+ G + + Sbjct: 333 AEKNRKRIKGFTPAAMDHLLRCPWPGNVRELENAVERAVILSVGEYVTERELPLSAMREA 392 Query: 631 TPPAATVVA----------------LEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKR 674 A A + E ++I+ L++T G AA+ LG+ R Sbjct: 393 GGNGAPGGAGGGAPAPGDMAGLAGMALDDVEREVILATLRDTGG---NKSEAARVLGITR 449 Query: 675 TTLLSRMKRLG 685 TL ++K+ G Sbjct: 450 ATLHKKLKKYG 460 >UniRef50_C0Q938 Sigma-54 dependent DNA-binding response regulator n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0Q938_DESAH Length = 525 Score = 549 bits (1416), Expect = e-154, Method: Composition-based stats. Identities = 174/513 (33%), Positives = 280/513 (54%), Gaps = 13/513 (2%) Query: 185 DNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLD 244 D + S LD+++ + + + + V+ N +NI ++ Sbjct: 4 DENDFFRQTALRISSSLDINKAMRNCMNYLKQHIPASGMYFVVYEPGLNIINILASIMPK 63 Query: 245 KQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLP 304 K + + + + S+E + +++ +D + + + +L + Sbjct: 64 KIQGSARRISIPAEYQDDLKKRFSEESQIKIINDLNDEPEPLQKIVNLVFPFECSLLEMH 123 Query: 305 LMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDEN 364 L T +G+ + + ++ + +L+ + E A+A+ N L +QEI RL + L D+N Sbjct: 124 LKLDGTRIGLFGVLSEGKHRYSEFHSHLITLVHEPFAVAISNILQHQEIQRLNKILSDDN 183 Query: 365 LALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHN 424 L ++ ++ IIG + V++ VE VA +DS V+I+GETGTGKE+IA AIH Sbjct: 184 RYLHREMMHLTG--DTIIGSKFGLKDVMRMVEHVAPTDSPVMIMGETGTGKEVIANAIHL 241 Query: 425 LSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGD 484 S R + +K+NC A+P L++S+LFGHE+GAFTGA +++ GRFE A ++FLDEVG+ Sbjct: 242 SSRRKDSAFIKINCGAIPDNLIDSELFGHEKGAFTGAVSRKRGRFERAHNGTIFLDEVGE 301 Query: 485 MPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNV 544 +PL+ Q +LLRVLQ+ E ER+G ++ I DVR++AAT+++L++MV +FR+DL++RLNV Sbjct: 302 LPLQAQVRLLRVLQQHEIERVGGSETIPVDVRIVAATHKNLEEMVRTGQFRADLWFRLNV 361 Query: 545 FPIHLPPLRERPEDIPLLAKAFTFKIARRLG-RNIDSIPAETLRTLSNMEWPGNVRELEN 603 FPIH+PPLR R D+P L F K + L R S+ T+ + EWPGNVREL+N Sbjct: 362 FPIHIPPLRHRTIDLPALTDYFLEKKSMELKIRKRPSLAPGTMEKMQAYEWPGNVRELQN 421 Query: 604 VIERAVLL----TRGNVLQLSLPDIVLPEPET-----PPAATVVALEGEDEYQLIVRVLK 654 ++ERA++ + L P ++ P P+ ++ E I +VL Sbjct: 422 LVERALIFNQMKNDESQLTFD-PQLINPIPKENMTLKREDGKIIRPLDEVMANHIQKVLD 480 Query: 655 ETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 +TNG V G GAA L + TL RMK+L ID Sbjct: 481 QTNGKVEGKNGAASLLKINPGTLRGRMKKLKID 513 >UniRef50_Q2LSK2 Sigma-54 dependent transcriptional regulator n=4 Tax=Bacteria RepID=Q2LSK2_SYNAS Length = 472 Score = 549 bits (1416), Expect = e-154, Method: Composition-based stats. Identities = 161/437 (36%), Positives = 239/437 (54%), Gaps = 25/437 (5%) Query: 275 NLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLR 334 + D+ + + T +P G +L +K + V T + Sbjct: 40 EIKAVDNGRKAMDAFVEDKYELVITDLKMPNGDGLELLKFVKDMNPDNIVIMMTGYGTVD 99 Query: 335 QIAERVAIAVDNALAYQEIHRLK----------ERLVDENLALTEQLNNVDSEFGEIIGR 384 E + + + ++ + L L +EN+ L + L +FG+++G Sbjct: 100 SAVEAMKLGAFDYISKPMRNDLVTLTVNRALSYASLQEENVTLRDHLRE-QYDFGKMLGY 158 Query: 385 SEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 444 SE M ++ +E VA+SDSTV+I GE+GTGKEL+ARAIH S RNN ++ +NC A+P Sbjct: 159 SECMKTIFDTIEKVAKSDSTVIIYGESGTGKELVARAIHFNSNRNNFPLIPVNCGAIPED 218 Query: 445 LLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFER 504 LLES+LFGHE+GAFTGA R+GRFELA S+FLDE+GDM LQ K+LRV+QE++FER Sbjct: 219 LLESELFGHEKGAFTGAIRNRLGRFELAQGGSIFLDEIGDMSPALQVKVLRVIQEKQFER 278 Query: 505 LGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAK 564 +G K I DVR+IAAT+++L+ V ++ FR DL+YR+NV PIHLP LRER DI +LA Sbjct: 279 IGGVKTINADVRIIAATHQNLELAVTEKRFREDLFYRINVIPIHLPALRERGADIAILAN 338 Query: 565 AFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDI 624 F K A+ + + E + + + WPGNVRELEN+IE V++ ++L Sbjct: 339 HFLQKFAQSKKKEVTRFTPEAIACMLHYPWPGNVRELENLIEMLVVMKEDGEIKLEDLPS 398 Query: 625 VLPE-----------PETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLK 673 + + + + E ++++ L +TNGV AA+ L L Sbjct: 399 KIRQFKKETQSFKEYQIPEEGIDFNDVVYQFEKNILLKALAKTNGV---KNRAAKLLNLN 455 Query: 674 RTTLLSRMKRLGIDKSA 690 RTTL+ ++KRL I + Sbjct: 456 RTTLVEKLKRLNISSES 472 >UniRef50_Q06065 Acetoacetate metabolism regulatory protein atoC n=32 Tax=Proteobacteria RepID=ATOC_ECOLI Length = 461 Score = 549 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 161/456 (35%), Positives = 239/456 (52%), Gaps = 23/456 (5%) Query: 255 VDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGV 314 VD+ + + + + H ++ + D + + +P M G L Sbjct: 10 VDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGIKALKE 69 Query: 315 LKLAQCEEKVFTTTNLNLLRQIAERVAIA----VDNALAYQEIHRLKER------LVDEN 364 ++ + V T + E + V E++ + +R + E Sbjct: 70 MRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQSMKKEI 129 Query: 365 LALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHN 424 L + L + ++G I+ S AM + K +A S ++VLI GE+GTGKELIARAIH Sbjct: 130 RHLHQAL-STSWQWGHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHY 188 Query: 425 LSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGD 484 S R +K+NCAA+P LLES+LFGHE+GAFTGA R G FE A++ +L LDE+G+ Sbjct: 189 NSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEIGE 248 Query: 485 MPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNV 544 MPL LQ KLLR+LQE+EFER+G ++ I+ D+R+IAATNRDL+ MV + FR DL+YRLNV Sbjct: 249 MPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRLNV 308 Query: 545 FPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENV 604 + LPPLR+R EDI LLA F K + R+I I + L+ WPGN+REL NV Sbjct: 309 IHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNV 368 Query: 605 IERAVLLTRGNVLQLSLPDIVLPEP---------ETPPAATVVALEGEDEYQLIVRVLKE 655 IERAV++ G ++ + +P + E ++I+ VL++ Sbjct: 369 IERAVVMNSGPIIFSEDLPPQIRQPVCNAGEVKTAPVGERNLKEEIKRVEKRIIMEVLEQ 428 Query: 656 TNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSAL 691 G A LG+ R L+ +++ GID + + Sbjct: 429 QEG---NRTRTALMLGISRRALMYKLQEYGIDPADV 461 >UniRef50_A4VJ57 Nitrogen fixation positive regulatory protein n=10 Tax=cellular organisms RepID=A4VJ57_PSEU5 Length = 521 Score = 548 bits (1413), Expect = e-154, Method: Composition-based stats. Identities = 169/523 (32%), Positives = 266/523 (50%), Gaps = 21/523 (4%) Query: 172 VNNVDYELLCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHR 231 + L I + ++EL++E+ +H + + + + + Sbjct: 7 ERPSAPTRNELLDAQLQALAQIARILNRGRPIEELLAEILAVLHEDLGLLHGLVSICNPK 66 Query: 232 KNKLNIYSTHYLDKQH-PAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLF 290 L + + H + A E + + + K +++ + + L+ Sbjct: 67 DGSLQVGAVHSDSETVVRACESTRYRIGEGVFGNILKHGNSVVLGRIDAEPRFLDRLALY 126 Query: 291 DTWGNQIQTLCLLPLMS-GDTMLGVLKLA-QCEEKVFTTTNLNLLRQIAERVAIAVDNAL 348 D +P+ + T +GVL L+ +A +A V + Sbjct: 127 DMDLP----FIAVPIKAVDGTTIGVLAAQPDRRADELMPERTRLMEIVARLLAQTVRLVV 182 Query: 349 AYQEIHRLKERLVDENLALTEQLNNVDSEFGEII-GRSEAMYSVLKQVEMVAQSDSTVLI 407 ++ + +VDE L ++ F ++ G + +M V QV VA+ +STVLI Sbjct: 183 NLED----GQEVVDERDELRREV-RAKYGFENMVVGHTASMRRVFDQVRRVAKWNSTVLI 237 Query: 408 LGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIG 467 LGE+GTGKELIA AIH S R ++ +V++NCAA+P LLES+LFGHE+GAFTGA QR G Sbjct: 238 LGESGTGKELIASAIHYNSPRAHQPLVRLNCAALPETLLESELFGHEKGAFTGAVKQRKG 297 Query: 468 RFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKK 527 RFE AD +LFLDE+G++ Q KLLRVLQE E ER+G ++ ++ +VR++AATNRDL+ Sbjct: 298 RFEQADGGTLFLDEIGEISPMFQAKLLRVLQEGELERVGGSQTVKVNVRIVAATNRDLEH 357 Query: 528 MVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLR 587 V +FR DLYYRLNV I +PPLRER DIP LA+ KIAR+ GR + + LR Sbjct: 358 EVEQGKFREDLYYRLNVMAIRVPPLRERSADIPELAEFLLDKIARQQGRKLK-LTDSALR 416 Query: 588 TLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGE---- 643 L + WPGNVRELEN +ER+ +++ + + + + + P A V ++ Sbjct: 417 LLMSHRWPGNVRELENCLERSAIMSEDGTISRDVVSLTGLDHDATPLAPVPEVDLADDSL 476 Query: 644 DEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 D+ + ++ L++ V AA+ LG+ + R++ L I Sbjct: 477 DDRERVIAALEQAGWV---QAKAARLLGMTPRQIAYRVQTLNI 516 >UniRef50_C6VVC1 Sigma54 specific transcriptional regulator, Fis family n=3 Tax=Sphingobacteriales RepID=C6VVC1_DYAFD Length = 650 Score = 548 bits (1412), Expect = e-154, Method: Composition-based stats. Identities = 181/539 (33%), Positives = 276/539 (51%), Gaps = 21/539 (3%) Query: 166 QIQSRVVNNVDYELLCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISI 225 +I + N + L +E + L + + + + + K D +S Sbjct: 115 EIAEYLHQNSNDAQLRKEAVFLQDLKTLAE---NGGEWTAQLLGIVKAFQRLIPFDYVSA 171 Query: 226 VLRSHRK---NKLNIYSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDL 282 ++ + + Q E + E + I+ E + Sbjct: 172 GFFGKNFLPFKGMHFLRIGFDEYQAMDAEGLRMVTNVRAAELANMMAALPPISQVEYYNA 231 Query: 283 APYERMLFDTWGNQI-------QTLCLLPL----MSGDTMLGVLKLAQCEEKVFTTTNLN 331 + +M + ++ ++ ++P+ + G F +L Sbjct: 232 EKFRKMSAEIPLKKLIAGKFDMRSNLVMPIANISIDGKQFF--FCFYSRRPDAFGEQDLE 289 Query: 332 LLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSV 391 L ++ + A+ + L D + + + F ++G+S M ++ Sbjct: 290 LCARLQPAIESAIRKMIRAASTSGPDMEL-DHAIEVMAGSRSESPVFDSMVGQSHLMLNI 348 Query: 392 LKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLF 451 L + VA SD++VLI GE+GTGKE +A IH LS R ++ VK+NCAA+P L+ES+LF Sbjct: 349 LDLISQVAPSDTSVLITGESGTGKEHVADTIHQLSPRKSKPFVKVNCAALPINLIESELF 408 Query: 452 GHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKII 511 GHE+GAFTGA+ +RIGRFE AD ++FLDE+GDMPLE+Q KLLRVLQ++E ER+G + I Sbjct: 409 GHEKGAFTGATERRIGRFEQADGGTIFLDEIGDMPLEVQVKLLRVLQQREIERVGGTQPI 468 Query: 512 QTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIA 571 + ++R+I ATNR+L++ +A+ +FR D+YYRLNVFPI +P LRER EDI L F Sbjct: 469 KINIRVITATNRNLERAIAEGKFRLDIYYRLNVFPIAMPALRERTEDIAPLVHHFIGYFG 528 Query: 572 RRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVL-QLSLPDIVLPEPE 630 R+ G+NI I L L + WPGN+RELENVIER+VLL +GN + + LP E Sbjct: 529 RKTGKNISGISDRALAMLMDYGWPGNIRELENVIERSVLLAKGNSIDTVYLPAHPAVEGI 588 Query: 631 TPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKS 689 V+ E+E I+ VLK G ++G GAA+ L + TTL S+MK+LGI KS Sbjct: 589 AKAGPPVLKNIFENERDHIISVLKACEGRISGENGAAKILAIPPTTLSSKMKKLGIKKS 647 >UniRef50_P09133 Nif-specific regulatory protein n=18 Tax=Rhizobiales RepID=NIFA_AZOC5 Length = 615 Score = 547 bits (1411), Expect = e-154, Method: Composition-based stats. Identities = 159/566 (28%), Positives = 257/566 (45%), Gaps = 72/566 (12%) Query: 191 VAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQHPAH 250 I+ + + ++ ++ V + + I + + ++ +T + Sbjct: 57 YEISKILTAPRRLEVTLANVVNVLSSMLQMRHGMICILDSEGD-PDMVATTGWTPEMAGQ 115 Query: 251 EQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDT 310 ++ V + +++ ++ L++ D L LF + +P+ + Sbjct: 116 IRAHVPQK--AIDQIVATQMPLVVQDVTADPLFAGHEDLFGPPEEATVSFIGVPIKADHH 173 Query: 311 MLGVLKLAQ--CEEKVF-TTTNLNLLRQIAERVAIAV--------DNALAYQEIHRLKER 359 ++G L + + F ++ L +A V V D + HRL++ Sbjct: 174 VMGTLSIDRIWDGTARFRFDEDVRFLTMVANLVGQTVRLHKLVASDRDRLIAQTHRLEKA 233 Query: 360 LVDENLALTEQLNNVDSEFG-EIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELI 418 L +E ++ + I+G S + ++ ++VA+S+STVL+ GE+GTGKEL Sbjct: 234 LREEKSGAEPEVAEAANGSAMGIVGDSPLVKRLIATAQVVARSNSTVLLRGESGTGKELF 293 Query: 419 ARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLF 478 ARAIH LS R + VK+NCAA+P +LES+LFGHE+GAFTGA R GRFELA +LF Sbjct: 294 ARAIHELSPRKGKPFVKVNCAALPESVLESELFGHEKGAFTGALNMRQGRFELAHGGTLF 353 Query: 479 LDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDL 538 LDE+G++ Q KLLRVLQE EFER+G N+ ++ DVRL+ ATN++L++ V+ EFR+DL Sbjct: 354 LDEIGEITPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVCATNKNLEEAVSKGEFRADL 413 Query: 539 YYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNV 598 YYR++V P+ LPPLRERP DIP LAK F + + ++ + A + L +PGNV Sbjct: 414 YYRIHVVPLILPPLRERPGDIPKLAKNFLDRFNKENKLHMM-LSAPAIDVLRRCYFPGNV 472 Query: 599 RELENVIERAVLLTRGNVLQLSLPD----------------------------------- 623 RELEN I R L V+ Sbjct: 473 RELENCIRRTATLAHDAVITPHDFACDSGQCLSAMLWKGSAPKPVMPHVPPAPTPLTPLS 532 Query: 624 ------------------IVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKG 665 LP A + E + +++ ++ + V Sbjct: 533 PAPLATAAPAAASPAPAADSLPVTCPGTEACPAVPPRQSEKEQLLQAMERSGWV---QAK 589 Query: 666 AAQRLGLKRTTLLSRMKRLGIDKSAL 691 AA+ L L + +++ ID Sbjct: 590 AARLLNLTPRQVGYALRKYDIDIKRF 615 >UniRef50_C9RIK1 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RIK1_FIBSS Length = 509 Score = 547 bits (1409), Expect = e-154, Method: Composition-based stats. Identities = 162/511 (31%), Positives = 264/511 (51%), Gaps = 16/511 (3%) Query: 185 DNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLD 244 +L I++ + LD + + V + + ++ ++ L + +++I L Sbjct: 9 QELELLYKISSILNQSLDFETVAHPVLQTVESVMGVEHATLTLYNRHTGEISIEIAEGLS 68 Query: 245 KQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLP 304 + + + +V E +T RV ++ + ++I +D + + +P Sbjct: 69 SRQASKGRYKVGEG--ITGRVVETGKPIIIPSVAKDPDFLDRTG---RGKTEDKAFLCVP 123 Query: 305 LMSGDTMLGVLKLAQCEEK-VFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDE 363 ++ ++G L + ++LL IA+ +A AV ++ E L E Sbjct: 124 IIMEQEVVGALSADEHNPDEANLNDQIHLLEIIAQMLATAVK---LRRQAREENEILKAE 180 Query: 364 NLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIH 423 N + +L + IIG++ M V Q++ VA+S LI+GE GTGK L+A AIH Sbjct: 181 NERMAMEL-KARFQPDNIIGKTPEMQQVYTQIDQVAKSPLPALIVGEVGTGKGLVAEAIH 239 Query: 424 NLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVG 483 S RN V+++CAA+P +L+ +LFG E+GA G + GR E A+ +LFLDEV Sbjct: 240 FRSDRNLGPFVRVHCAALPESVLDRELFGSEKGALVGVVNEAPGRVEQAEGGTLFLDEVA 299 Query: 484 DMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLN 543 ++ LQ KLLR+LQ+ E ER+G+ + +VR+I AT ++L++MV+D FR DLYY+L+ Sbjct: 300 ELTPNLQIKLLRLLQQGEMERVGARFPKKVNVRVICATTKNLQQMVSDGTFREDLYYQLH 359 Query: 544 VFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELEN 603 + PI++PPLR+R DI LLA F R +G+N+ + T+ L + WPGNVRELEN Sbjct: 360 IVPIYVPPLRKRRTDIVLLADYFVDHYCRLVGKNVRRLARGTIEMLMSYPWPGNVRELEN 419 Query: 604 VIERAVLLTRGNVLQLSLPDIVLPEPE---TPPAATVVALEGEDEYQLIVRVLKETNGVV 660 IERAVLLT +V+ + E TP + + + E +I LK + G + Sbjct: 420 AIERAVLLTEEDVIYPHHFPPTIQTDETSGTPVSGNLKLMVEAYERDIICDALKSSKGKM 479 Query: 661 AGPKGAAQRLGLKRTTLLSRMKRLGIDKSAL 691 A AA+ L L ++K+LGID +A Sbjct: 480 A---AAARSLSTTPRILTYKIKQLGIDLAAF 507 >UniRef50_C7LPL8 Sigma54 specific transcriptional regulator with PAS/PAC sensor, Fis family n=2 Tax=Deltaproteobacteria RepID=C7LPL8_DESBD Length = 575 Score = 546 bits (1408), Expect = e-154, Method: Composition-based stats. Identities = 196/531 (36%), Positives = 289/531 (54%), Gaps = 13/531 (2%) Query: 166 QIQSRVVNNVDYELLCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISI 225 ++Q+ + E L R+ F L A D LV V ++ + Sbjct: 53 EMQNEELRQT-QEALETSRNAFAELYDFAPAGYFSFDPQGLVRSVNLLGAQLLGLEREHL 111 Query: 226 V-----LRSHRKNKLNIYSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERD 280 + + ++S H D F ++ + Sbjct: 112 LGKPMSRWIPDADGRKVFSKHCADVLRREGNDICEIWLQRANGMKFHARLRSIAKESVEG 171 Query: 281 DLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERV 340 M+ D + + L + + TN L+ +I R Sbjct: 172 THGAIRSMIVDVTEEEKLKIALQNAHGELE-----QKVMERTRELLLTNKRLVLEIGVRK 226 Query: 341 AIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQ 400 +A +EI +LK+RL EN+ L + FGEIIG+S A+ V ++E +A Sbjct: 227 DTEESLRMAIKEIKQLKDRLQAENIYLQHEAAQ-KFNFGEIIGQSSAIAHVFDKIEQIAS 285 Query: 401 SDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTG 460 ++TVL+ GETG GK ++ARAIH S R +R MV +NC A+PA L+ES+LFG E+GAFTG Sbjct: 286 QNTTVLLQGETGCGKGVVARAIHARSARKDRAMVTINCTALPANLIESELFGREKGAFTG 345 Query: 461 ASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAA 520 ASA+++GRFELAD ++FLDE+G+MP+ELQ KLLRV+Q+ EFERLGS + I+ DVR+IAA Sbjct: 346 ASARQMGRFELADGGTIFLDEIGEMPMELQCKLLRVIQDGEFERLGSPRTIKVDVRIIAA 405 Query: 521 TNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDS 580 +NR L++ + + FR DLYYRLNVFPI +PPLR R +DI LL F K +++G+ I++ Sbjct: 406 SNRKLEEEIKNGSFREDLYYRLNVFPITIPPLRARKDDIRLLVNFFVAKFNKKIGKKIET 465 Query: 581 IPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVAL 640 IP E L L N +WPGNVRELE+VIERA+++++G LQ+ P+P A V AL Sbjct: 466 IPKEALEALENYDWPGNVRELESVIERAIIISKGPSLQILDQFNTSPKPSETSGADVKAL 525 Query: 641 EGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSAL 691 + E I+ VL++TN V G GAA L + +TL +RM++ GI+++++ Sbjct: 526 V-DLERDHIIHVLQKTNWRVEGKNGAAAILDINPSTLRARMRKFGINRNSI 575 >UniRef50_C6VTN7 Sigma 54 interacting domain protein n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VTN7_DYAFD Length = 479 Score = 546 bits (1408), Expect = e-153, Method: Composition-based stats. Identities = 182/418 (43%), Positives = 256/418 (61%), Gaps = 8/418 (1%) Query: 282 LAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVA 341 L + + L G L+ E + + L Q++ V+ Sbjct: 59 LPLSADAHVPAGEASEHEVLAIALHDESGTWGHLRFYSDREAISPAIPMALPDQVSSVVS 118 Query: 342 IAVDNA-------LAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQ 394 +A+ N +EI + +L ++N L E+ + +IIG S M V + Sbjct: 119 LAIANIVSTEKLSRQLEEIKHYQSQLEEQNAYLLEE-AKEGFSYDDIIGSSGPMQRVFQL 177 Query: 395 VEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHE 454 + V+ ++STVL+LGETGTGKEL+ARAIHN S R +R MV++NCAA+PA L+ES+LFGHE Sbjct: 178 LSQVSFTNSTVLLLGETGTGKELVARAIHNSSARKDRLMVRVNCAAIPAHLIESELFGHE 237 Query: 455 RGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTD 514 +G+FTGA +RIG+FELA++++LFLDE+G+MPL++Q KLLR +QE+E ER+G +I+ D Sbjct: 238 KGSFTGAFERRIGKFELANQATLFLDEIGEMPLDMQAKLLRAIQEREIERIGGKGVIKVD 297 Query: 515 VRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRL 574 VR+IAATNR+L + V FRSDL+YRL+VFPI LPPLRER DI LLAK F + A+ Sbjct: 298 VRIIAATNRNLLEEVQQGRFRSDLFYRLHVFPITLPPLRERTGDISLLAKQFVGRFAKNN 357 Query: 575 GRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPA 634 G++I I + ++ L WPGNVRELE+ +ER VLL R +V++ L P A Sbjct: 358 GKSISRISSNVMKALLAYPWPGNVRELEHQMERCVLLARDHVIRDVLLPSPTQSGHAPAA 417 Query: 635 ATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSALI 692 E+E + I+RVL + NG + GP GAAQ L LK TL S++K+LGI K +I Sbjct: 418 GIYTKTHEENEREYIIRVLNQCNGKIYGPGGAAQLLNLKVGTLNSKIKKLGISKEQII 475 >UniRef50_Q2IQM1 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Myxococcales RepID=Q2IQM1_ANADE Length = 485 Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats. Identities = 161/424 (37%), Positives = 228/424 (53%), Gaps = 18/424 (4%) Query: 275 NLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLR 334 + E D +L + +P M G +L + + T + Sbjct: 38 EIAEAADGEEALALLPGFAPAAVLADVRMPRMDGINLLRRAREQGSDAVFVMMTAFASVE 97 Query: 335 QIAERVAIAVDNALA----------YQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGR 384 E + +N L E K RL + L E++ F I+G Sbjct: 98 AAVEAMRAGAENYLVKPLDVNAVLVVLEKALEKLRLQRDTANLRERVRE-RYRFHNIVGD 156 Query: 385 SEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 444 + +++V + V+ A + +TVLILGE+GTGKEL A+A+H S R ++ +K+NCAA+ Sbjct: 157 APELHAVYEVVKRAAPTRATVLILGESGTGKELFAQALHEESPRADKAFIKVNCAALSET 216 Query: 445 LLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFER 504 LLES+LFGHE+GAFTGA ++ GRFELAD +LFLDE+GD+ LQ KLLRVLQ++EFER Sbjct: 217 LLESELFGHEKGAFTGAIGRKEGRFELADGGTLFLDEIGDISPALQIKLLRVLQQREFER 276 Query: 505 LGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAK 564 +G + ++ DVRL+AATNRDL V + FR DLYYRLNV + LPPLR+R DIP L Sbjct: 277 VGGTQTLKVDVRLVAATNRDLAAEVKNGRFREDLYYRLNVVAVTLPPLRQRKGDIPALVS 336 Query: 565 AFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDI 624 F K ++ G++I + TL + + +WPGNVRELENV+ERAV+L +G+ L Sbjct: 337 HFIDKYSKAYGKDIRGLAPGTLNAVLSHDWPGNVRELENVVERAVVLCKGSELTADDLPP 396 Query: 625 ----VLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSR 680 P P A A E E + I+R L+ G + AA+ LG+ + R Sbjct: 397 TLRGPRPRERAPGALIPGATLYEIEREAILRTLEMVGGSTS---RAAEILGISVRKIQYR 453 Query: 681 MKRL 684 +K Sbjct: 454 LKEY 457 >UniRef50_Q1PV55 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PV55_9BACT Length = 448 Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats. Identities = 159/424 (37%), Positives = 234/424 (55%), Gaps = 17/424 (4%) Query: 276 LHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQ 335 + ER+ D + T ++P M G +L +K V T+ + Sbjct: 29 DAVTNGADAIERISKDPEYAIVLTDFVMPEMDGIQLLSKIKQINSAIDVIVMTSYGTVSS 88 Query: 336 IAERVAIAVDNAL----------AYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRS 385 E + + + E +RL E L +L FG IIG S Sbjct: 89 AVEAMKHGASDYITKPFKRDELVLVIEKILQMQRLEGEVDRLRSELGE-KYTFGNIIGES 147 Query: 386 EAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGL 445 + + + V+ +++ +LI GETGTGKEL+A+AIH S RNN R VK++C+++ L Sbjct: 148 PKIKKIYDIISHVSGTEANILIQGETGTGKELVAKAIHYNSARNNHRFVKVDCSSLTETL 207 Query: 446 LESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERL 505 LES+LFGHE+GAFTGA+ R+GRF AD ++FLDE+G++ L +Q KLLRVLQ+ EFE + Sbjct: 208 LESELFGHEKGAFTGATKDRVGRFRKADHGTIFLDEIGNISLAVQAKLLRVLQDSEFEAV 267 Query: 506 GSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKA 565 GS++ I+ DVR+IAATN DL+ V FRSDL+YRLNV I LPPLRER EDIPLLA Sbjct: 268 GSDESIKVDVRIIAATNADLEGCVEKGLFRSDLFYRLNVIRIFLPPLRERTEDIPLLAAH 327 Query: 566 FTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIV 625 F ++ + ++ +TL L++ WPGN+RELENVIERAV+L + N + + Sbjct: 328 FLAIHNKKNRKTVEGFSRDTLNILTSYAWPGNIRELENVIERAVILCKKNRITPEDVPLY 387 Query: 626 LPEPETPP---AATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMK 682 + T P + L + E Q+I+ L+ + A + A+ L + R +L +++ Sbjct: 388 QEKMGTRPGLSGKPLQELLEQTERQIIINTLEAND---ADKEKTAKILKISRASLYNKLN 444 Query: 683 RLGI 686 + I Sbjct: 445 KYKI 448 >UniRef50_C8X5B4 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X5B4_DESRD Length = 522 Score = 544 bits (1403), Expect = e-153, Method: Composition-based stats. Identities = 184/517 (35%), Positives = 279/517 (53%), Gaps = 7/517 (1%) Query: 176 DYELLCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKL 235 + + L+ I NA++ + + L ++ EI+ + D SI L H L Sbjct: 9 ATRVTLNPTRRYETLLRINNAIVQQTTRESLFQALSNEIYQLIEYDRFSINLYDHELRSL 68 Query: 236 NIYSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGN 295 + +++ + + E G + + V ++KE L+I + + + Sbjct: 69 SYFASA--KGVSLGGKMTRPLEKGLIAQTVIRTKEPLIIPDVKNQSYFSN---MNNMIEA 123 Query: 296 QIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHR 355 + PL+ DT+LG L + + ++ +VAIAV N LA+ + R Sbjct: 124 GLNVTMGYPLIVRDTVLGSLHFSFKNRPDNLDEVNSFFEDLSPQVAIAVYNILAHNRLKR 183 Query: 356 LKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGK 415 L E L +E L ++ + + +SE+M V++QV+ VA SD+ VLI GETGTGK Sbjct: 184 LNESLKNEKKFLKKE-AHGSFDPENFFYKSESMSDVMQQVKNVAASDAPVLITGETGTGK 242 Query: 416 ELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKS 475 E IA IH+ S R++ +VK+NC A+ + L ES+LFGH +GAFTGAS QRIGRFE+A+ Sbjct: 243 EYIAHCIHHTSLRSDALLVKVNCPALASSLFESELFGHTKGAFTGASQQRIGRFEMANNG 302 Query: 476 SLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFR 535 ++FLDE+ ++P+ Q K+L VLQ++ FER+G ++ I D R++AATN+DL + + FR Sbjct: 303 TIFLDEIAELPMPQQAKILHVLQDRCFERVGESRSISADFRIVAATNKDLLHAIHNESFR 362 Query: 536 SDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWP 595 SDLYYRLN IH+P LRERPEDIP+L + +I++RL R + L +L WP Sbjct: 363 SDLYYRLNTAQIHIPSLRERPEDIPVLVINLSDQISKRLHRPSPKYSDKVLESLCQYPWP 422 Query: 596 GNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPP-AATVVALEGEDEYQLIVRVLK 654 GNVREL+N + R L ++LS L + + E E Q IV L+ Sbjct: 423 GNVRELKNFVHRMFLQRSAENVKLSDVKSYLGNSQEIEYNDNNILPMHEMEKQHIVNALR 482 Query: 655 ETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSAL 691 GV++G GAA L +KR+TL R+KR I+ S Sbjct: 483 ICKGVLSGENGAASLLQMKRSTLQYRLKRHNINPSDY 519 Score = 69.9 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 46/373 (12%), Positives = 111/373 (29%), Gaps = 19/373 (5%) Query: 12 QGLFDITRTLLQQPDLASLCEALSQLVKRSALADNAAIVLWQAQTQRASYYASREKDTPI 71 + L I ++QQ SL +ALS + + D +I L+ + + SY+AS + + Sbjct: 21 ETLLRINNAIVQQTTRESLFQALSNEIYQLIEYDRFSINLYDHELRSLSYFASAKGVSLG 80 Query: 72 KYEDETVLAHGPVRSILSRPDTLHCSYEEFCETWPQLDAGGLYPKFGHYCLMPLAAEGHI 131 + ++++ + L + +++ + PL + Sbjct: 81 GKMTRPLEKGLIAQTVIRTKEPLIIP-DVKNQSYFSNMNNMIEAGLNVTMGYPLIVRDTV 139 Query: 132 FGGCEF-IRYDDRPWSEKEFNRLQTFTQIVSVVTEQIQSRVVNNVDYELLCRERDNFRIL 190 G F + E + + + V++ I + E L E+ + Sbjct: 140 LGSLHFSFKNRPDNLDEVN-SFFEDLSPQVAIAVYNILAHNRLKRLNESLKNEKKFLK-- 196 Query: 191 VAITNAVLSRLDMDELV---SEVAKEIHYYFDIDDI-SIVLRSHRKNKLNIYSTHYLDKQ 246 D + ++ + ++ + VL + Y H + Sbjct: 197 ----KEAHGSFDPENFFYKSESMSDVMQQVKNVAASDAPVLITGETGTGKEYIAHCIHHT 252 Query: 247 HPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQ---TLCLL 303 + V E+ + F+ N + L Sbjct: 253 SLRSDALLVKVNCPALASSLFESELFGHTKGAFTGASQQRIGRFEMANNGTIFLDEIAEL 312 Query: 304 PLMSGDTMLGVLK---LAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERL 360 P+ +L VL+ + E + + ++ + + A+ N +++ Sbjct: 313 PMPQQAKILHVLQDRCFERVGESRSISADFRIVAATNKDLLHAIHNESFRSDLYYRLNTA 372 Query: 361 VDENLALTEQLNN 373 +L E+ + Sbjct: 373 QIHIPSLRERPED 385 >UniRef50_Q4K714 Sigma-54 dependent DNA-binding response regulator n=6 Tax=cellular organisms RepID=Q4K714_PSEF5 Length = 465 Score = 544 bits (1402), Expect = e-153, Method: Composition-based stats. Identities = 159/442 (35%), Positives = 244/442 (55%), Gaps = 27/442 (6%) Query: 274 INLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLL 333 I + + ++L + + + +P M G +LG +K + V T + + Sbjct: 27 IQVFTAGNGLHALKVLEQEDIDLVISDWRMPGMDGPQLLGEIKQRYPQLPVIVMTAYSTV 86 Query: 334 RQIAERVAIA----VDNALAYQEIHRLKERLVD------ENLALTEQLNNVDSEFGEIIG 383 + + + + E+ + + +N + +L + ++G Sbjct: 87 KNAVQSMRNGAYDYIAKPFDIDELDITVSKALQFRDILKDNQRMRAELAE-HQQIDSLVG 145 Query: 384 RSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPA 443 S A VL+ V+ V +S++T+L+ GE+GTGKE++ARAIH R ++ V +NCAA+P Sbjct: 146 DSPAFRRVLQAVDSVRESNATILLTGESGTGKEMVARAIHKHGNRADKPFVAVNCAAIPE 205 Query: 444 GLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFE 503 GLLES++FGH +GAFTGA A R+GRF+ ADK +LFLDEVGDMPL LQ K+LR LQE+ E Sbjct: 206 GLLESEMFGHRKGAFTGAVADRVGRFQQADKGTLFLDEVGDMPLALQAKILRALQERVIE 265 Query: 504 RLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLA 563 +G + + DVR+IAATN++L + VA++EFR DLYYRLNVFPI LP LRER EDI LLA Sbjct: 266 PVGDPRERKVDVRVIAATNKNLLEAVANKEFREDLYYRLNVFPIPLPALRERVEDIALLA 325 Query: 564 KAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPD 623 + F + G+ I E L+ +++ WPGN+REL+N +ERA ++ G V++ Sbjct: 326 RHFAHSLGATAGKRISGFSPEALQAMASYAWPGNIRELQNCVERATIVATGQVIEEKDLP 385 Query: 624 IVLPEPETPP-------------AATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRL 670 L P+ + + A E E I+ L+++NGV AAQ + Sbjct: 386 GYLFGPQAQGTESSAAISVGPQVPSDLEAALAEVEKAYILAALQQSNGV---QAAAAQLI 442 Query: 671 GLKRTTLLSRMKRLGIDKSALI 692 G+ + R+K+LGI ++ Sbjct: 443 GISERSFWYRLKKLGIQVDKIV 464 >UniRef50_D0LFQ8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LFQ8_HALO1 Length = 515 Score = 544 bits (1401), Expect = e-153, Method: Composition-based stats. Identities = 179/458 (39%), Positives = 247/458 (53%), Gaps = 48/458 (10%) Query: 274 INLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLL 333 L +L D I T +P M+G +L Q + T L Sbjct: 30 FRLLCASSGEEALEILRDNEVAVIVTDQRMPRMTGLELLLKAAEIQPDAVGIILTAYTDL 89 Query: 334 RQIAERVAI----------------------AVDNALAYQEIHRLKERLVDENLALTEQL 371 + + + + A++ +E RL +L + L +++ Sbjct: 90 DVLVDAINLGQIYRYVTKPWEAKELRGILTHALERYALLRENQRLMAQLREYTGYLNQEI 149 Query: 372 NNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNR 431 + +FG IIG S A+ VL +VE VA ++STVL+ GETGTGKEL+A AIH S R N+ Sbjct: 150 HGA-FDFGNIIGDSAALGEVLSKVEQVAPTNSTVLLRGETGTGKELVAHAIHINSSRENQ 208 Query: 432 RMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQP 491 V++NCAA+ G+LES+LFGHE+GAFTGA AQR GRFELAD +LFLDE GD+P+E+Q Sbjct: 209 PFVRVNCAALAPGVLESELFGHEKGAFTGAVAQRPGRFELADGGTLFLDECGDLPMEVQI 268 Query: 492 KLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPP 551 KLLR LQE+EFER+G + I+ DVR+I+ATNRDL+ M+ FR DLYYRLNVFPIHLPP Sbjct: 269 KLLRALQEREFERVGGTQTIKVDVRVISATNRDLEAMIEAGSFREDLYYRLNVFPIHLPP 328 Query: 552 LRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLL 611 LR+R ED+P L F K AR + L L + WPGNVRELEN+IERA++L Sbjct: 329 LRDRLEDLPALVAHFIAKFARSGMTRTPGVRGAALDKLRSYTWPGNVRELENIIERAMIL 388 Query: 612 TRGNVLQLSLPDIVLPEPETPP----------------------AATVVALEGEDEYQLI 649 RG L D P + + + E + I Sbjct: 389 ARGRELDADHLDFGRRAQNATPVSGTPSVISETASHSPPLIGDESKPLAERLLDSERREI 448 Query: 650 VRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 + ++++N +A AA+ LG+ R+TL RM++ G++ Sbjct: 449 IAAVEKSNNNIAS---AARMLGINRSTLYYRMRKHGLE 483 >UniRef50_P03027 Nif-specific regulatory protein n=14 Tax=Proteobacteria RepID=NIFA_KLEPN Length = 524 Score = 544 bits (1401), Expect = e-153, Method: Composition-based stats. Identities = 168/518 (32%), Positives = 245/518 (47%), Gaps = 22/518 (4%) Query: 185 DNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHY-L 243 F + I+ + + + + EV +H + I L ++ L+I + Sbjct: 18 QQFTAMQRISVVLSRATEASKTLQEVLSVLHNDAFMQHGMICLYDSQQEILSIEALQQTE 77 Query: 244 DKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLL 303 D+ P Q L V + L++ D L+D + Sbjct: 78 DQTLPGSTQIRYRPGEGLVGTVLAQGQSLVLPRVADDQRFLDRLSLYDYDLP----FIAV 133 Query: 304 PLMS-GDTMLGVLKLAQC-EEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLV 361 PLM +GVL ++ L +A +A + + + ++ Sbjct: 134 PLMGPHSRPIGVLAAHAMARQEERLPACTRFLETVANLIAQTIRLMILPTSAAQAPQQ-S 192 Query: 362 DENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARA 421 + ++G+S AM ++ + V++ D+TVL+ GE+GTGKELIA A Sbjct: 193 PRIERPRACTPSRGFGLENMVGKSPAMRQIMDIIRQVSRWDTTVLVRGESGTGKELIANA 252 Query: 422 IHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDE 481 IH+ S R VK NCAA+P LLES+LFGHE+GAFTGA QR GRFELAD +LFLDE Sbjct: 253 IHHNSPRAAAAFVKFNCAALPDNLLESELFGHEKGAFTGAVRQRKGRFELADGGTLFLDE 312 Query: 482 VGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYR 541 +G+ Q KLLR+LQE E ER+G ++ ++ +VR+IAATNR L++ V FR DLYYR Sbjct: 313 IGESSASFQAKLLRILQEGEMERVGGDETLRVNVRIIAATNRHLEEEVRLGHFREDLYYR 372 Query: 542 LNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVREL 601 LNV PI LPPLRER EDI LA KIA GR + I +R L WPGNVREL Sbjct: 373 LNVMPIALPPLRERQEDIAELAHFLVRKIAHSQGRTL-RISDGAIRLLMEYSWPGNVREL 431 Query: 602 ENVIERAVLLTRGNVLQLSL--------PDIVLPEPETPPAATVVALEGEDEYQLIVRVL 653 EN +ER+ +L+ ++ + P L + E Q ++ L Sbjct: 432 ENCLERSAVLSESGLIDRDVILFNHRDNPPKALASSGPAEDGWLDNSLD--ERQRLIAAL 489 Query: 654 KETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSAL 691 ++ V AA+ LG+ + R++ + I L Sbjct: 490 EKAGWV---QAKAARLLGMTPRQVAYRIQIMDITMPRL 524 >UniRef50_Q8Z333 Transcriptional regulatory protein zraR n=36 Tax=Proteobacteria RepID=ZRAR_SALTI Length = 441 Score = 543 bits (1399), Expect = e-152, Method: Composition-based stats. Identities = 152/400 (38%), Positives = 229/400 (57%), Gaps = 8/400 (2%) Query: 289 LFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIA----V 344 + + + + + M G L +K + T + + E + + Sbjct: 45 VREKVFDLVLCDVRMAEMDGIATLKEIKALNPAIPILIMTAFSSVETAVEALKAGALDYL 104 Query: 345 DNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDST 404 L + + E+ + +L + + +IG S AM +L ++ MVA SD+T Sbjct: 105 IKPLDFDRLQETLEKALAHTRETGAELPSASAAQFGMIGSSPAMQHLLNEIAMVAPSDAT 164 Query: 405 VLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQ 464 VLI G++GTGKEL+ARA+H S R+++ +V +NCAA+ LLES+LFGHE+GAFTGA + Sbjct: 165 VLIHGDSGTGKELVARALHACSARSDKPLVTLNCAALNESLLESELFGHEKGAFTGADKR 224 Query: 465 RIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRD 524 R GRF AD +LFLDE+GD+ +Q +LLR +QE+E +R+GSN+ I DV LIAAT+RD Sbjct: 225 REGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVWLIAATHRD 284 Query: 525 LKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAE 584 L + V+ FR DLYYRLNV I +P LR+R EDIPLLA F + A R + + + Sbjct: 285 LAEEVSAGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKAVKGFTPQ 344 Query: 585 TLRTLSNMEWPGNVRELENVIERAVLLTRGNVL-QLSLPDIVLPEPETPPAATVVALEGE 643 + L + +WPGN+RELEN IERAV+L G + + LP + P + + + Sbjct: 345 AMDLLIHYDWPGNIRELENAIERAVVLLTGEYISERELPLAIAATPIKAENSAEIQPLVD 404 Query: 644 DEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKR 683 E ++I+ L++T G AA++LG+ R TLL+++ R Sbjct: 405 VEKEVILAALEKTGG---NKTEAARQLGITRKTLLAKLSR 441 >UniRef50_Q2LUG8 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=6 Tax=Bacteria RepID=Q2LUG8_SYNAS Length = 456 Score = 542 bits (1398), Expect = e-152, Method: Composition-based stats. Identities = 153/430 (35%), Positives = 226/430 (52%), Gaps = 20/430 (4%) Query: 275 NLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLR 334 + E + + + + +P M G +L +K E V T + Sbjct: 29 TVEEAASGEEAVQSIAGGAFDLVLLDYKMPGMDGMQVLQEVKRLNPETDVVIITAYGTIE 88 Query: 335 QIAERVAIAVDNALAY----------QEIHRLKERLVDENLALTEQLNNVDSEFGEIIGR 384 + + + + + + L+ EN L QL + II Sbjct: 89 TAVDAMKAGAVDYITKPLEFDELLLLLDRVAERRTLIRENEILRRQLKDQGVTTDAIIFT 148 Query: 385 SEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 444 S+ M ++ VA S +TVL+ GE+GTGKEL+AR IH LS R+ R ++ +NC A+P Sbjct: 149 SQKMAALTSMAARVASSRATVLLQGESGTGKELLARLIHQLSPRSTRPIITVNCGALPES 208 Query: 445 LLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFER 504 L+ES+LFGHE+GAFTGA+++RIGRFE AD +LFLDE+G++ + +Q KLLR LQE+EF+R Sbjct: 209 LIESELFGHEKGAFTGATSRRIGRFEEADGGTLFLDEIGELTMPVQVKLLRFLQEREFQR 268 Query: 505 LGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAK 564 +G N I+ DVR+I+ATNRDL+ MV + +FR DLYYRLNV + +PPLRER EDIP L Sbjct: 269 VGGNTNIRADVRIISATNRDLETMVKEEKFREDLYYRLNVVVMSIPPLRERREDIPALID 328 Query: 565 AFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDI 624 F + A G+ I I +E L ++PGNVRELEN+IERAV++ R ++ + Sbjct: 329 HFLERFAAENGKKISGISSEARDLLMKYDYPGNVRELENIIERAVVIARNEIIYMEDLPF 388 Query: 625 -------VLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTL 677 + E Q+I +++ AA+ LGL L Sbjct: 389 REDTLVATSGGVPEEGEGRLRGAIENLEKQMIQDAMEKAG---DHQTRAAEMLGLSERML 445 Query: 678 LSRMKRLGID 687 ++K+ G+ Sbjct: 446 RYKLKKYGLK 455 >UniRef50_B1Y713 Transcriptional regulator, NifA, Fis Family n=4 Tax=Burkholderiales RepID=B1Y713_LEPCP Length = 593 Score = 542 bits (1397), Expect = e-152, Method: Composition-based stats. Identities = 159/445 (35%), Positives = 235/445 (52%), Gaps = 13/445 (2%) Query: 181 CRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKN---KLNI 237 R + I + + LD+ + + + + IV+ ++ +L + Sbjct: 9 ERSHVELITIYEICRILGASLDIGRTFRASLNVLAAHLGLSRVMIVMAPDDRDGEARLRV 68 Query: 238 YSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQI 297 +S+ LD++ Q E + V+ S +++ + F +++ Sbjct: 69 HSSVGLDQEQERRGQWHYGEG--VIGHVYASGMPVVVPDVAQAAEFIDRTGAFGAQADRM 126 Query: 298 QTLCLLPLMSGDTMLGVLKLAQC-EEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRL 356 ++PL + ++GVL + V + + +L A +A A + + Sbjct: 127 MAFVVVPLKTDRAVVGVLAAQREVSGGVRLSDDQRILTMAATLMAQAAS---LHGAVTEE 183 Query: 357 KERLVDENLALTEQLN---NVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGT 413 +RL E L + L ++G S M V +V A + +TVL+ GE+GT Sbjct: 184 HKRLQLETTRLQKALAPEPRGRYTLDNVVGVSRGMQQVFSEVHQAAPARATVLLRGESGT 243 Query: 414 GKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELAD 473 GKE IARA+H LS R + +K+NCAA+ LLES+LFGHERGAFTGA+ R GRFE A Sbjct: 244 GKEAIARALHYLSPRKDAPFIKVNCAALTESLLESELFGHERGAFTGAAGDRKGRFEQAH 303 Query: 474 KSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADRE 533 +LFLDEVGD+ Q KLLRVLQE+EFER+G N+ I+ DVRLI ATNRDL+KMV E Sbjct: 304 TGTLFLDEVGDISASFQAKLLRVLQEREFERVGGNRAIKVDVRLICATNRDLEKMVKRGE 363 Query: 534 FRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNME 593 +R+DLYYR+NV I LPPLRER +DIP L F + + R + I + + LS+ Sbjct: 364 YRADLYYRINVVSIFLPPLRERRDDIPALVSHFVDRFNKENRRKL-RIAGDAMEVLSHCY 422 Query: 594 WPGNVRELENVIERAVLLTRGNVLQ 618 WPGNVRELEN IER + G++++ Sbjct: 423 WPGNVRELENCIERTATMANGDLIR 447 Score = 48.3 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 10/72 (13%), Positives = 24/72 (33%), Gaps = 3/72 (4%) Query: 620 SLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLS 679 + I E T + E + ++ +++ V AA+ L + L Sbjct: 525 DVLRIGPTEHLTGTPRQFGNEPPDGERERLIWAMEQCAWV---QAKAARLLHVTPRQLGY 581 Query: 680 RMKRLGIDKSAL 691 +++ I+ Sbjct: 582 ALRKYNIEVHKF 593 >UniRef50_C7LTG8 Sigma54 specific transcriptional regulator with PAS/PAC sensor, Fis family n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LTG8_DESBD Length = 806 Score = 542 bits (1397), Expect = e-152, Method: Composition-based stats. Identities = 183/528 (34%), Positives = 277/528 (52%), Gaps = 25/528 (4%) Query: 180 LCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYS 239 + E I + + + + I + + + + Sbjct: 286 VRNENGEIVCWAGINLDISRLKQAEAALRASEELNRKTLQALPAHIAVIDRQGGIIAVNH 345 Query: 240 THYLDKQHPAHEQS--------------EVDEAGTLTERVFKSKEMLLINLHERDDLAPY 285 +H + S V ++N + Sbjct: 346 AWEEFARHNDADGSPSVTVGANYCEVCRRATAGKDSLAEVALRGIEAVLN--GTSEQFMM 403 Query: 286 ERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKL----AQCEEKVFTTTNLNLLRQIAERVA 341 E + + + PL G V+ + +V + L E Sbjct: 404 EYPCHSPQEERWFFMTVAPLGLGGENGAVITHLNISERVRFEVELQKAHDELELRVE--K 461 Query: 342 IAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQS 401 + A +EI++LK+RL EN+ L +++ + FGEIIG+S+++ ++ +Q+E V+ Sbjct: 462 RTYELRAANKEINQLKDRLQAENICLRQEVAR-EYNFGEIIGQSDSIVNMFEQIEQVSPL 520 Query: 402 DSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGA 461 ++TVL+LGETGTGK L+ARAIH S R R M+ +NCAA+PA L+ES+LFG ERGAFTG+ Sbjct: 521 NATVLLLGETGTGKGLVARAIHARSARKGRSMITVNCAALPANLIESELFGRERGAFTGS 580 Query: 462 SAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAAT 521 +AQ++GRFELAD ++FLDE+G+MPLELQ KLLRV+Q+ E ERLGS + I+ DVR+IAA+ Sbjct: 581 NAQQLGRFELADGGTIFLDEIGEMPLELQSKLLRVIQDGEMERLGSPRTIKVDVRIIAAS 640 Query: 522 NRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSI 581 NR+L+ + FR DL+YRLNVFPI +PPLR+R DI LL F K ++ G+NI ++ Sbjct: 641 NRNLQDEIRKGRFREDLFYRLNVFPISIPPLRQRDGDIALLINFFVAKFNKKTGKNIKTV 700 Query: 582 PAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALE 641 P TL L WPGNVRELE+V+ERAV+ + G+ LQ+ D +T P + Sbjct: 701 PKNTLNALQEYHWPGNVRELESVVERAVITSPGSSLQI--LDRFETSRKTVPVDGNIKAL 758 Query: 642 GEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKS 689 + E I++VL++T + G GAA L + +TL +RM++ GI + Sbjct: 759 VDLERDHILQVLRKTGWRIEGKSGAAALLEINPSTLRARMRKFGIRRQ 806 >UniRef50_Q1PYB5 Similar to sigma 54 response regulatory protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYB5_9BACT Length = 645 Score = 542 bits (1397), Expect = e-152, Method: Composition-based stats. Identities = 193/505 (38%), Positives = 291/505 (57%), Gaps = 19/505 (3%) Query: 193 ITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQHPAHEQ 252 + + + +E+++E +++ I + + ++ S + Sbjct: 148 VVTDLTEQKRNEEMLAE--EKLTTQILNQAAEIFVLCDPQGRILRASQSTSSLFGRSPLF 205 Query: 253 SEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLC--LLPLMSGDT 310 DEA L + ++ + F N+ + PL++ Sbjct: 206 QVFDEAFHLL---YPDGMPFILLPAMSGKFLHAVEVNFKHGDNETYSFLLSANPLITHKG 262 Query: 311 MLGVLKLA-----QCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENL 365 +G++ + + + + + + L Q E + + AL+ EI LK+RL EN+ Sbjct: 263 AIGIVVVMVDITERRKMEDSRQKDHDKLEQQVEERTLELRTALS--EIKTLKDRLEAENI 320 Query: 366 ALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNL 425 L + N F +I+G+S+++ VL + E VA +++TVLILGETGTGKELIA AIH++ Sbjct: 321 YLRHE-NKRRHHFAQILGQSDSLKYVLYRAEQVAPTNATVLILGETGTGKELIAFAIHDM 379 Query: 426 SGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDM 485 S R R M+ +NCAA+P L+ES+LFG E+GAFTGA +RIGRFE+A+ S+L LDE+G++ Sbjct: 380 SPRKERPMITVNCAALPGNLIESELFGREKGAFTGADTRRIGRFEVANGSTLCLDEIGEL 439 Query: 486 PLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVF 545 PLELQ KLLRV+Q EFERLGS I+ DVR++A TNR+L++ + + FR DLYYRLNVF Sbjct: 440 PLELQAKLLRVIQHNEFERLGSPHTIKVDVRIVATTNRNLEEEIRNGRFRQDLYYRLNVF 499 Query: 546 PIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVI 605 PI +PPLR+R EDIPL+ AF + +R+LG+ I SI E ++ L + WPGNVRELE++I Sbjct: 500 PITVPPLRQRKEDIPLMVHAFVERYSRKLGKQITSIQKEAMKALQDYPWPGNVRELESII 559 Query: 606 ERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKG 665 ERAV+L G VLQL+ E +P ++ V E E I+++L ET + G G Sbjct: 560 ERAVILCPGPVLQLAD----KLEISSPAFSSTVRTLEETERDQILKILSETRWRIEGKNG 615 Query: 666 AAQRLGLKRTTLLSRMKRLGIDKSA 690 AA LG+ +TL +RM +LGI + Sbjct: 616 AAAILGIHPSTLRARMHKLGIVRPE 640 >UniRef50_Q73KY8 Sigma-54 dependent transcriptional regulator, putative n=1 Tax=Treponema denticola RepID=Q73KY8_TREDE Length = 505 Score = 542 bits (1396), Expect = e-152, Method: Composition-based stats. Identities = 177/512 (34%), Positives = 272/512 (53%), Gaps = 23/512 (4%) Query: 183 ERDNFRILVAITNAVLSR-LDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTH 241 +RD L+ + + S D+ L+ ++ + + D S+++ +L Sbjct: 8 KRDKLNTLINTSLLINSNYSDLSVLLEKIVESAMDVVEGDAASLLMLEPDGERLRFEIAI 67 Query: 242 YLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLC 301 ++D + V K +IN D + + G + + + Sbjct: 68 GPKGIEAKKMVLDLD---GIAGWVIKYNRSAIINDVLSDPRF--DPTVQKVTGYKNRNMI 122 Query: 302 LLPLMSGDTMLGVLKLAQ-CEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERL 360 +P+ D +GV+++ EEK F + +LN+L A + AIA NA Y E+ Sbjct: 123 AVPMRIKDECIGVIEVLNKREEKDFDSDDLNVLELFATQTAIAYQNAKHY-------EKS 175 Query: 361 VDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIAR 420 +E + L +QL + I +S+ M L+ +A SD++VLILGE+G GKELIA Sbjct: 176 REEIICLQDQLEQDR-GYHTFIAKSKVMNEKLELCRNIAASDASVLILGESGVGKELIAE 234 Query: 421 AIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLD 480 +H S R N +++NCAA+P GLLES+LFGH RGAFT A + R GRFELADK ++FLD Sbjct: 235 QLHLNSRRVNNPFIRVNCAALPEGLLESELFGHVRGAFTDAISDRKGRFELADKGTIFLD 294 Query: 481 EVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYY 540 E+GD+PL LQ KLLRVLQE FER+GSNK + D R+IAATN++++++V +FRSDLYY Sbjct: 295 EIGDIPLTLQTKLLRVLQEMAFERVGSNKTLTVDTRIIAATNKNIEELVRQGKFRSDLYY 354 Query: 541 RLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRE 600 RLNV PI++PPLR R +DI LA F K ++ + + + + ++ WPGN+RE Sbjct: 355 RLNVLPIYIPPLRNRKDDIQELAHFFLKKFSKEVKKPFLGFSPDAEKLINAYSWPGNIRE 414 Query: 601 LENVIERAVLLTRGNVLQLSLPDIVLPEPETPPA-----ATVVALEGEDEYQLIVRVLKE 655 LEN +ERA +L + ++ + P + + + + IV++L E Sbjct: 415 LENAVERACVLGKPPYIEEKDLLLKFESSSFEPEVNYSNPDLKSAVNDFKKSFIVKILNE 474 Query: 656 TNGVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 AA++LG++RT L +K L I Sbjct: 475 HKW---NQTAAAEKLGIQRTYLSRLIKELEIK 503 >UniRef50_D2TTF4 Two-component system response regulator n=3 Tax=Proteobacteria RepID=D2TTF4_CITRO Length = 441 Score = 541 bits (1395), Expect = e-152, Method: Composition-based stats. Identities = 158/408 (38%), Positives = 232/408 (56%), Gaps = 8/408 (1%) Query: 281 DLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERV 340 + + + M G L +K V T + + E + Sbjct: 37 SGREALEKASGHVFDLVLCDVRMAEMDGIETLREIKALNPAIPVLIMTAFSSVETAVEAL 96 Query: 341 A-IAVDNALAYQEIHRLKERLVDENLALTE---QLNNVDSEFGEIIGRSEAMYSVLKQVE 396 A+D + + RL+E L E +L +V + ++G+S AM +L ++ Sbjct: 97 KTGALDYLIKPLDFDRLQETLEKSLAHAQEVAGELPSVSASQSGMVGKSPAMQQLLSEIA 156 Query: 397 MVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERG 456 MVA SD+TVLI G++GTGKEL+ARA+H S R+++ +V +NCAA+ LLES+LFGHE+G Sbjct: 157 MVAPSDATVLIHGDSGTGKELVARALHASSARSDKPLVTLNCAALNESLLESELFGHEKG 216 Query: 457 AFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVR 516 AFTGA +R GRF AD +LFLDE+GD+ +Q +LLR +QE+E +R+GSN+ + DVR Sbjct: 217 AFTGADKRREGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTLSVDVR 276 Query: 517 LIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGR 576 LIAAT+RDL + + FR DLYYRLNV I P LR+R EDIPLLA+ F + A R + Sbjct: 277 LIAATHRDLAQEASAGRFRQDLYYRLNVVTIETPSLRQRREDIPLLAEHFLQRFAARNRK 336 Query: 577 NIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVL-QLSLPDIVLPEPETPPAA 635 + + + L + WPGN+RELEN IERAV+L G + + LP + + A Sbjct: 337 AVKGFTPQAMDLLIHYAWPGNIRELENAIERAVVLLTGEYISERELPLAIANQAMPLMPA 396 Query: 636 TVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKR 683 + E E ++I+ L++T G AA++LG+ R TLL+++ R Sbjct: 397 QAIQPLVEVEKEVILAALEKTGG---NKTEAARQLGITRKTLLAKLSR 441 >UniRef50_C1SGB7 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SGB7_9BACT Length = 473 Score = 541 bits (1394), Expect = e-152, Method: Composition-based stats. Identities = 160/472 (33%), Positives = 239/472 (50%), Gaps = 30/472 (6%) Query: 248 PAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMS 307 + + VD+ + E + ++ + +++ D + I + +P + Sbjct: 4 TSKKILIVDDDDNMREAMLETVRRMGVSVEIATDGQEGFEKASKNAYDLIVSDMRMPNVD 63 Query: 308 GDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLAL 367 G TM+ +++ A + T + + + + + + + E LV L + Sbjct: 64 GMTMMNMIQSAGITTPLCFVTAFGTVNNAVDALKLGAYDYILKPFAPEVIEELVRRVLEI 123 Query: 368 TEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSG 427 E V + I RS M + VA S++TVLI GE+GTGKE+ AR IH S Sbjct: 124 EETAPAVKRKKNTAIFRSAFMAQLFSLARDVAASEATVLITGESGTGKEVFARYIHENSN 183 Query: 428 RNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPL 487 R++ V +NCAA+P L+ES+LFG+E+GAFTGA ++ G+FELAD ++ LDE+G++PL Sbjct: 184 RSSGAFVAVNCAALPENLMESELFGYEKGAFTGAVNRKPGKFELADGGTILLDELGEIPL 243 Query: 488 ELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPI 547 LQ KLLRVLQE+E ERLG K + +VR++A TN+ LKK V + FR DLYYRLNV I Sbjct: 244 HLQAKLLRVLQEKEVERLGGTKPFKINVRILATTNKVLKKEVDEGNFREDLYYRLNVISI 303 Query: 548 HLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIER 607 LPPLRER EDI LA F K A+ G+ + + ++ L + +WPGNVRELE+ IER Sbjct: 304 ELPPLRERKEDIMELATFFAEKYAQINGKGSCKMTDDAVKALLDYDWPGNVRELEHTIER 363 Query: 608 AVLLTRGNVLQLSLPDI------------------------VLPEPETPPAATVVALEGE 643 AV+L R V+ + E E Sbjct: 364 AVVLCRDGVISERNLFLHGITINQFMTDKQELAAADSYTGCETTEDSVSAGIDFAGTIAE 423 Query: 644 DEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRL---GIDKSALI 692 E +LI++ LKET G AA LG+ TL +++ G++ +I Sbjct: 424 MERELIIKTLKETGG---NRTKAADMLGITVRTLRNKLNEYKENGLNIEDII 472 >UniRef50_D0KWC0 Transcriptional regulator, NifA subfamily, Fis Family n=2 Tax=Chromatiales RepID=D0KWC0_HALNC Length = 539 Score = 541 bits (1394), Expect = e-152, Method: Composition-based stats. Identities = 164/531 (30%), Positives = 267/531 (50%), Gaps = 36/531 (6%) Query: 183 ERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHY 242 E I+ + + DE ++ + + + ++ + L+ + L+I ++ Sbjct: 15 EDVELLIIYEASRLMTHNGTADEAINGILRLMSQMIGLNRGRVTLKDDDMDTLSIRYSYG 74 Query: 243 LDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCL 302 L A + E +T RV +++++ ++ + + + + T + Sbjct: 75 LTPPERARGHYVIGEG--VTGRVMQTRQVAVVQNIDDEPVYLTRAVERGTLPQETVAFLA 132 Query: 303 LPLMSGDTMLGVLKLAQ-CEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLV 361 +P++ +T LGVL + K + ++NLL+ +A +A + + +E L L Sbjct: 133 VPILYNNTPLGVLGAHRLRGRKRPFSRDINLLQVLATLIAQILSLSRLIEEKTAL---LA 189 Query: 362 DENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARA 421 DEN AL + L+ I+G S A+ L+Q V+ + +TVL+ GE+GTGKE AR Sbjct: 190 DENRALKQALDQKTEGTHGILGESPALRHALRQALHVSPTQATVLLTGESGTGKERFARL 249 Query: 422 IHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDE 481 +H S + + +NCAA+P LLES+LFGHE+GAFTGA ++ G ELA+ +LFLDE Sbjct: 250 VHITSQLRDGPFMAINCAAIPEALLESELFGHEKGAFTGAVVKKQGIIELANNGTLFLDE 309 Query: 482 VGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYR 541 +GD+ L+LQ KLL VL+++ +R+G + I +VR+IAAT+++L+K V + +FR DL+YR Sbjct: 310 IGDLALDLQSKLLHVLEKRAIKRVGGTQDIPVNVRIIAATHKNLQKAVNEGQFRIDLFYR 369 Query: 542 LNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVREL 601 LNVFPIHLPPLRER D+ LA+ F + RN L L WPGN+R+L Sbjct: 370 LNVFPIHLPPLRERGGDVSHLARHFLQRANHEFDRN-TVFGPGVLERLDGYNWPGNIRQL 428 Query: 602 ENVIERAVLLTRGNVLQLSLP--------------------------DIVLPEPETPPAA 635 EN+++RAVL+ + + + LP P Sbjct: 429 ENIVKRAVLIAQNREITIDDVILILQHESHIGEHLEAGSTKSVAPIEPPSLPSKSHQPTQ 488 Query: 636 TVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 DE Q ++ L++T G AA LG+ R++RLG+ Sbjct: 489 RGYGWVRADETQGLLDALRQTGG---NKTRAAMTLGMTPRQFRYRLERLGL 536 >UniRef50_Q027A1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q027A1_SOLUE Length = 450 Score = 540 bits (1393), Expect = e-152, Method: Composition-based stats. Identities = 166/453 (36%), Positives = 234/453 (51%), Gaps = 20/453 (4%) Query: 250 HEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGD 309 ++ V E RV + + + ++ A + D + + T LP M G Sbjct: 2 KKRILVVEDEEKLRRVIELQLLSAGFDVDKAASAEEGLKIVDR-ADMVLTDLKLPNMDGQ 60 Query: 310 TMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALA----------YQEIHRLKER 359 L +++ V T + E + + L + Sbjct: 61 EFLSLIRRQNSHVPVVMMTAFGNVETAVEAMKAGATDFLLKPFSLDHLMQVVDKALEVRA 120 Query: 360 LVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIA 419 L +EN L L EF I+GRS AM + +E V S +TVL+ GE+G GK+LIA Sbjct: 121 LREENRELKAALGR-RYEFDNIVGRSPAMQEIFAAIERVGPSRATVLLTGESGVGKDLIA 179 Query: 420 RAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFL 479 RAIH S R +R +VK+NC A+P L+ES+LFG+E+GAFTGA + G+FE AD ++FL Sbjct: 180 RAIHFHSPRKDRPLVKINCTAIPENLMESELFGYEKGAFTGAQTTKPGKFEQADTGTVFL 239 Query: 480 DEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLY 539 DE+GD+P +Q KLLRVLQE+EFERLGSN DVRL+AATN+DL+ + FR DLY Sbjct: 240 DEIGDVPAAIQVKLLRVLQEREFERLGSNVTRHIDVRLVAATNQDLRAALEQGTFREDLY 299 Query: 540 YRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVR 599 YRLNV P+++PPLRER DIP LA F K+A G ++SI + L WPGNVR Sbjct: 300 YRLNVVPLNIPPLRERKVDIPFLANHFVHKLAPDTGCQVESITDAGMEKLMAYHWPGNVR 359 Query: 600 ELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAA-----TVVALEGEDEYQLIVRVLK 654 ELENVIER++++ G L + + E ++I L+ Sbjct: 360 ELENVIERSLVMATGTQLDADDIKLESAPRPRAQGNDNHFLPEGLSLDQYEQEIIREALR 419 Query: 655 ETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 +G AA+ LGL R L R+ ++G++ Sbjct: 420 RADG---NKSQAARLLGLTRNALRYRLTQMGLE 449 >UniRef50_C1ZA32 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains n=10 Tax=Bacteria RepID=C1ZA32_PLALI Length = 551 Score = 540 bits (1392), Expect = e-152, Method: Composition-based stats. Identities = 194/528 (36%), Positives = 284/528 (53%), Gaps = 39/528 (7%) Query: 197 VLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSH---------------RKNKLNIYSTH 241 + ++ L++ + + I I L + L + ++ Sbjct: 20 LAREHSVEGLLNLIVSRLAEQKRIALARIWLSQPTSECRGCSTQEVCQHQTECLKLVASR 79 Query: 242 YLDKQHPA-------HEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWG 294 P+ + + R+ + + + + L + Sbjct: 80 GSSLTTPSITWTAVDGAFQYMPYSVRKVGRIAATGLAIEEPEIQ-EPLPEWIARPEWVRA 138 Query: 295 NQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIH 354 I+ PL+ +LGVL + + + + LR IA+ A A+ A A+ EI Sbjct: 139 EGIRGFAGQPLIHRGKVLGVLGVFARQ--IIGEECMGWLRMIADHAAAAIVTARAFAEIE 196 Query: 355 RLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTG 414 L++RL EN L E++ FGE+IG+S A+ +V +Q+++VA +DS+VLILGE+GTG Sbjct: 197 SLRKRLELENEYLREEVTG-SGAFGELIGQSPALGTVSQQIDLVAPTDSSVLILGESGTG 255 Query: 415 KELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADK 474 KEL+AR IH S R+NR ++K+NCAA+P L ES+ FGH +GAFTGA R+GRFELAD Sbjct: 256 KELVAREIHRRSRRSNRPLIKVNCAAVPRELYESEFFGHAKGAFTGALRDRVGRFELADG 315 Query: 475 SSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREF 534 +LFLDEVG++PLELQ KLLRVLQE E ER+G + + +VR+IAATNRDL+ F Sbjct: 316 GTLFLDEVGEIPLELQAKLLRVLQEGELERVGEERTRKVNVRIIAATNRDLRMEAEAGRF 375 Query: 535 RSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEW 594 R DLYYRL+VFP+ +PPLR R ED+PLLA F AR++GR + ++ L +W Sbjct: 376 RQDLYYRLSVFPVEVPPLRRRKEDVPLLASHFLRIAARKVGRPQPLLTLAIVQKLQQYDW 435 Query: 595 PGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVAL-------------E 641 PGNVREL++VIERAV+ + L + LP +P + + Sbjct: 436 PGNVRELQHVIERAVITSTNERLLIELPQTTGSKPTRSVKSPSNSTATSQEIPIRTDLEI 495 Query: 642 GEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKS 689 + E + I+ L+ T+G ++GP GAA LGLK TTL SR+K LGI + Sbjct: 496 RQMEAENILAALQATHGKISGPGGAAALLGLKPTTLASRIKALGIKPA 543 >UniRef50_A7HBA5 Two component, sigma54 specific, transcriptional regulator, Fis family n=6 Tax=Bacteria RepID=A7HBA5_ANADF Length = 466 Score = 540 bits (1391), Expect = e-152, Method: Composition-based stats. Identities = 158/421 (37%), Positives = 240/421 (57%), Gaps = 15/421 (3%) Query: 280 DDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAER 339 D L + + +P M G +L K Q E V T + Sbjct: 36 PDGRSAVEKLKSERWSIMIVDLKMPGMDGLQVLEAAKKLQPELAVVIMTAYATVDTAVTA 95 Query: 340 VAIAVDNAL----AYQEIHRLKER------LVDENLALTEQLNNVDSEFGEIIGRSEAMY 389 + + + L +E+ + ++ LV EN L + L + F +++ +S AM Sbjct: 96 MKLGAYDYLVKPFDPEELSIMMQKIVSQQSLVRENAVLRQALKQ-EYRFRDLLSKSPAMQ 154 Query: 390 SVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESD 449 SV + A+S+ST+L+LGE+G+GKE++ARA+H S R V ++CAA+ LLES+ Sbjct: 155 SVFELARTAARSNSTILVLGESGSGKEVLARAVHAESPRAGGPFVAVSCAALTESLLESE 214 Query: 450 LFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNK 509 LFGHE+G+FTGA ++R G+FE A +LFLDEVGD+ +LQ LLRVL+E+ F R+G N+ Sbjct: 215 LFGHEKGSFTGAISRRKGKFEAAHGGTLFLDEVGDIGPKLQLDLLRVLEERRFHRVGGNE 274 Query: 510 IIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFK 569 I+ DVR+IAATNRDL++ + +FR DL+YRLNV PI +PPLRER EDIPLL + F + Sbjct: 275 PIEVDVRIIAATNRDLRRAAHEGKFREDLFYRLNVIPILVPPLRERREDIPLLVENFVER 334 Query: 570 IARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEP 629 ++ + R I+ + + + L +WPGNVREL NV+ER ++ G V+QLS + Sbjct: 335 LSVEMKRRIEGVSPDAMGALMAHDWPGNVRELRNVLERGAVVATGTVIQLSDLGLPTRLE 394 Query: 630 ETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKS 689 T+ + E E + + VL NG V+ +A+ LG+ R TL ++M++ G+ + Sbjct: 395 AASKPGTLAS-LEEVEKRHVAAVLAHANGNVS---QSARILGIDRVTLYNKMRKYGLRRD 450 Query: 690 A 690 Sbjct: 451 G 451 >UniRef50_B3E4S0 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Geobacter lovleyi SZ RepID=B3E4S0_GEOLS Length = 456 Score = 539 bits (1390), Expect = e-151, Method: Composition-based stats. Identities = 152/434 (35%), Positives = 230/434 (52%), Gaps = 16/434 (3%) Query: 269 KEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTT 328 + A L + + + T +PLM G +L +K + + T Sbjct: 25 GADPRFRVETAGSGAEALERLQHSPADIVITDLSMPLMDGIELLSEIKSLYPQIFILILT 84 Query: 329 NLNLLRQIAERVAIAVDNAL----AYQEIHRLKERLVDENLALT-----EQLNNVDSEFG 379 + + Q+ + + + L ++ + R ++ A+ E L+ F Sbjct: 85 SDDSTSQVVKAMKAGAYDYLLKPFDFEMVERSIATILSHKAAVQAGLCPECLSGEQYCFE 144 Query: 380 EIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCA 439 +IG+ M+ + + + VAQ+ +TVLI GE+GTGKELIA AIH S R ++ +++NCA Sbjct: 145 NLIGQDRKMFEIYEMISQVAQTSATVLITGESGTGKELIASAIHAKSTRKDKPFIQINCA 204 Query: 440 AMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQE 499 A+ GL+ S+LFGHE+GAFTGA A++ G FE A +LFLDE+GD+ Q LLR+L+ Sbjct: 205 ALTEGLISSELFGHEKGAFTGAVARKKGLFEQASGGTLFLDEIGDISPTTQVSLLRILEL 264 Query: 500 QEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDI 559 F+R+G + I+ DVRLI ATNRDL +++FR DLYYRLNV + PPLR+R DI Sbjct: 265 GTFQRVGGTETIKADVRLICATNRDLAAAAREKQFREDLYYRLNVVSLQAPPLRDRRSDI 324 Query: 560 PLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQL 619 PLL + F + + ID + + + L N +WPGN REL N+IE AV+ +RG L Sbjct: 325 PLLVRYFLERYCSLNNKQIDGVTRDAMTLLCNYDWPGNCRELANIIEHAVIFSRGRTLDK 384 Query: 620 S-LPDIVLPEPETPPAATV---VALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRT 675 LP + T+ A + E LI +VL+E+N K AA+ L + R Sbjct: 385 DSLPSQIRTSDRHSSGLTLNLATATLADAESALIKKVLEESNW---NLKKAAELLDIARG 441 Query: 676 TLLSRMKRLGIDKS 689 TL +M++ + K Sbjct: 442 TLYGKMEKYHLTKP 455 >UniRef50_Q1D574 Sigma-54 dependent transcriptional regulator, Fis family n=7 Tax=Myxococcales RepID=Q1D574_MYXXD Length = 630 Score = 539 bits (1388), Expect = e-151, Method: Composition-based stats. Identities = 168/610 (27%), Positives = 272/610 (44%), Gaps = 27/610 (4%) Query: 83 PVRSILSRPDTLHCSYEEFCETWPQLDAGGLYPKFGHYCLMPLAAEGH-IFGGCEFIRYD 141 P+ LH +++ L A L+ G E I Sbjct: 34 PLEDTSVPASALHVTFDGTRYEVGSLGATFHVNGKKR-DAHALSTGDVVRVGHTELIFAR 92 Query: 142 DRPWSEKEFNRLQTFTQIVSVVTEQIQSRVVNNVDYELLCRERDNFRILVAITNAVLSRL 201 D + + + RE R L A + +L Sbjct: 93 DDAP-----RAPPLPASPPRELIHTSNPDSHTSELPGVPGRELLLLRRLTAFSERLLGLY 147 Query: 202 DMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQHPAHEQSEVDEAGTL 261 D++ L+ + E D ++L + + +++ + + ++ Sbjct: 148 DLERLLEGLMDEAIEVTRADKGFLILM--ENGDPRVKVARNVSRENIEDAVEKDKISDSI 205 Query: 262 TERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCE 321 +V K ++ L++ ++ ++ +PLM + GVL + Sbjct: 206 IAKVVKEQKALIVADALDSPEF---NKSESVVNLRVHSVMCVPLMQKGDLFGVLYVGNDR 262 Query: 322 -EKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGE 380 F + ++L A + ++ + NA+ ++ +N L +L + G+ Sbjct: 263 LVNRFEPKSADMLTIFAAQASLILQNAMLVSDLKL-------DNTELRRKLEDQRY--GD 313 Query: 381 IIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAA 440 I+G + M V K+++ +A +D +VLI GETGTGKELIAR IH S R + +NC A Sbjct: 314 IVGACQGMRDVYKRIDKIAPTDISVLITGETGTGKELIAREIHRRSTRAKGPFITINCGA 373 Query: 441 MPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQ 500 +P LLES+LFGH +GAFTGA A + G+F+ A +LFLDE+G+MPL+LQ KLLR LQE+ Sbjct: 374 IPENLLESELFGHVKGAFTGAVATKAGKFQAAIGGTLFLDEIGEMPLQLQVKLLRALQEK 433 Query: 501 EFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIP 560 ++G N+ D+R++AATN+ L+ V FR DLYYRLNV + LPPLRER ED+ Sbjct: 434 VVYKVGDNRGEPVDIRVVAATNKVLEDEVKKNTFREDLYYRLNVVTLKLPPLRERGEDVV 493 Query: 561 LLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLS 620 +L + F K AR ++ WPGN+RELEN +++AV+L +L Sbjct: 494 VLGRFFLQKYAREFSSKARGFTPSATVSMRKYGWPGNIRELENRLKKAVVLADKPLLGPD 553 Query: 621 LPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSR 680 D L P ++ + E + + I VL NG A+ LG+ T+ Sbjct: 554 DLD--LKPENLEPIMPLLQAKEEFQKRYINEVLARNNG---NRTKTAKDLGVDPRTIFRH 608 Query: 681 MKRLGIDKSA 690 +++L +KS Sbjct: 609 LEKLEAEKSG 618 >UniRef50_Q21UU9 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Proteobacteria RepID=Q21UU9_RHOFD Length = 474 Score = 539 bits (1388), Expect = e-151, Method: Composition-based stats. Identities = 153/466 (32%), Positives = 232/466 (49%), Gaps = 28/466 (6%) Query: 249 AHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSG 308 + VD+ + + L + + + +T + + ++P M G Sbjct: 2 SARILVVDDEEIVIRSCVRILNDDLYTVDSAPGGFEALKKVDETAYDILILDVMMPKMDG 61 Query: 309 DTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIA----VDNALAYQEIHR------LKE 358 +L +K E V T L+ ++ + + + + E+ + Sbjct: 62 LEVLQHVKERHPEIDVIMMTGLSEIQTAVKAMKLGAFDYLSKPFDPDELKLVVNRALERR 121 Query: 359 RLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELI 418 +L+ EN L ++ + F IIG S M +V + A ++STVLI GE+GTGKE+I Sbjct: 122 QLMQENRKLKTEV-SSKYRFENIIGSSPPMQAVFGLIAKCAPTNSTVLITGESGTGKEMI 180 Query: 419 ARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLF 478 ARAIH S R ++ V ++C + LLES+LFGH +G+FTGA A + G F++A+ +LF Sbjct: 181 ARAIHYNSLRKDQPFVTVDCNTLSENLLESELFGHTKGSFTGAVANKRGMFDVANNGTLF 240 Query: 479 LDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDL 538 LDE G++PL Q KLLRV+QE+EF +G+ +T+VRLI ATN+DLK MVA+ FR DL Sbjct: 241 LDEFGNIPLSTQAKLLRVIQEREFRPVGTTTNQKTNVRLITATNKDLKAMVAEGTFREDL 300 Query: 539 YYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNV 598 YYR+NVFPIH P LRER +DIP LA F LG+ + I + L N WPGNV Sbjct: 301 YYRINVFPIHSPALRERRDDIPALAFHFLKIFCSELGKPVSEISEGAMSLLMNYGWPGNV 360 Query: 599 RELENVIERAVLLTRGNVLQLSLP--------------DIVLPEPETPPAATVVALEGED 644 RELEN ++RAV+L+ +++ + E + E Sbjct: 361 RELENTMQRAVILSSDGIIRQAHLASIIDNSPRLDLDVPRTSDELKRIKKIAREKSVEEV 420 Query: 645 EYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSA 690 E + LK + +A+ G++RT + MK+ I Sbjct: 421 EKLFVQETLKR---NASNVTRSAEETGMQRTNFQALMKKYNIRVRD 463 >UniRef50_Q6ARB9 Probable two-component system response regulator (Ntr family) n=1 Tax=Desulfotalea psychrophila RepID=Q6ARB9_DESPS Length = 443 Score = 538 bits (1387), Expect = e-151, Method: Composition-based stats. Identities = 151/419 (36%), Positives = 225/419 (53%), Gaps = 10/419 (2%) Query: 276 LHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQ 335 + D L + I +P + G L +L V T + + Sbjct: 28 VITAGDGDEVLAKLTKNKIDLILLDMKMPRIDGLATLSLLSQQNNRIPVIVITAFSSMEN 87 Query: 336 IAERVAIA----VDNALAYQEIHRLKERLVDENLALT---EQLNNVDSEFGEIIGRSEAM 388 E + V + +H + + + ++ DS+F EIIG S M Sbjct: 88 AIEAMKKGAFDYVTKPVDIDNLHIAISKALHQKISPPLSPGTEPQADSKFPEIIGESAPM 147 Query: 389 YSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLES 448 + Q+ ++A SD+T+L+ GE+GTGKEL+A AIH S R ++++NCAA+ LLES Sbjct: 148 QELFSQISLIAPSDATILLSGESGTGKELVATAIHRHSKRKEGALIRINCAALHENLLES 207 Query: 449 DLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSN 508 +LFGHE GAFTGA+ Q+ G FE ADK +LFLDE+GDM L Q K+LRVLQE EFER+G N Sbjct: 208 ELFGHELGAFTGAAKQKKGLFERADKGTLFLDEIGDMSLTTQVKILRVLQEGEFERVGGN 267 Query: 509 KIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTF 568 I+ +VR+IAA++R+L+K++ + FR DL++RL+V P+HLP LRER DIP+LA F Sbjct: 268 DSIKVNVRIIAASHRNLEKLIEEGTFRQDLFFRLSVVPLHLPALRERLVDIPILANFFLS 327 Query: 569 KIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPE 628 ++ ++I E L L WPGN+RELEN IER V+L G + Sbjct: 328 LYNKKNRKDIKGFSQEALDLLMEYPWPGNIRELENSIERGVILCLGEQITAHELPPQFFR 387 Query: 629 PETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 +P + + E + I + L + A++LG+ R TLL++++ G++ Sbjct: 388 NRSPGELSSRDTLRDVEKRAIQQALARSG---FNKSATAKQLGIARQTLLNKIRDYGLE 443 >UniRef50_Q9APD9 Transcriptional regulatory protein zraR n=89 Tax=Proteobacteria RepID=ZRAR_KLEOX Length = 443 Score = 538 bits (1387), Expect = e-151, Method: Composition-based stats. Identities = 151/416 (36%), Positives = 225/416 (54%), Gaps = 10/416 (2%) Query: 275 NLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLR 334 + ++ + + + + + M G L +K V T + + Sbjct: 31 RVALANNGLQALEKVREKVFDLVLCDIRMAEMDGIETLKEIKTFNPSIPVLIMTAYSSVD 90 Query: 335 QIAERVAIA----VDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYS 390 E + + L + ++ + + + ++G S AM + Sbjct: 91 TAVEALKSGALDYLIKPLDFDKLQLTLSEALAHTRLSESPVTETPAAQFGMVGDSPAMRA 150 Query: 391 VLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDL 450 +L + +VA SD+TVLI GE+GTGKEL+ARA+H S R+ R +V +NCAA+ LLES+L Sbjct: 151 LLNNITLVAPSDATVLIHGESGTGKELVARALHASSARSRRPLVILNCAALNESLLESEL 210 Query: 451 FGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKI 510 FGHE+GAFTGA +R GRF AD +LFLDE+GD+ +Q +LLR +QE+E +R+GSN+ Sbjct: 211 FGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQT 270 Query: 511 IQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKI 570 + DVRLIAAT+RDL + V+ FR DLYYRLNV I +PPLR R EDIP LA+ F + Sbjct: 271 LSVDVRLIAATHRDLAEEVSAGRFRQDLYYRLNVVTIDMPPLRHRREDIPPLARYFLQRY 330 Query: 571 ARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVL---P 627 A R + + + + L + WPGN+RELEN +ERAV+L G + + + P Sbjct: 331 AERNRKAVQGFTPQAMDLLIHYAWPGNIRELENAVERAVVLLTGEYISERELPLAITGTP 390 Query: 628 EPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKR 683 + P + E E + I+ L+ T G AA+RLG+ R TLL+++ R Sbjct: 391 VADAPHGDDSIQPLVEVEKEAILAALERTGG---NKTEAARRLGITRKTLLAKLSR 443 >UniRef50_Q1INE5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Acidobacteria RepID=Q1INE5_ACIBL Length = 459 Score = 537 bits (1385), Expect = e-151, Method: Composition-based stats. Identities = 151/422 (35%), Positives = 227/422 (53%), Gaps = 18/422 (4%) Query: 280 DDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAER 339 + + + + + G + L V T + Sbjct: 36 ESANEALSRVAEQTYDLALLDIKMRGTDGVELQRKLHELVPGLIVIMMTGYASVETAVAT 95 Query: 340 VAIA----VDNALAYQEIHRL------KERLVDENLALTEQLNNVDSEFGEIIGRSEAMY 389 + + L +E L +R EN+ L EQ+ +++ RS+AM Sbjct: 96 LRNGAYDYITKPLDPEETAHLVSKALAHKRTEQENVRLKEQIEEHAHV--DLVWRSDAMK 153 Query: 390 SVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESD 449 + +E VA +D+TVLI GE+GTGKE++ARAIH LS R MV ++C A+ LLES+ Sbjct: 154 KINDAIETVAPTDATVLITGESGTGKEVVARAIHALSTRRFHPMVPVHCGALTETLLESE 213 Query: 450 LFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNK 509 LFGHE+GAFTGA ++ G+FE+A+ ++FLDE+GD+ L+ Q LLRVLQE+E R+G N+ Sbjct: 214 LFGHEKGAFTGAQYRKKGKFEVAEGGTVFLDEIGDISLKTQTDLLRVLQEREIVRVGGNQ 273 Query: 510 IIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFK 569 I+ D R++AATN+DL+K++ + FR DL+YRLNVF I LPPLR+R EDIPLL FT K Sbjct: 274 PIKVDFRIVAATNKDLEKLIEEGHFRPDLFYRLNVFRIELPPLRDRREDIPLLVNHFTKK 333 Query: 570 IARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEP 629 A ++ + + + + + L WPGNVRELEN +ERA+++ + L+ + + + Sbjct: 334 FAEQMNKRVTRVASPAMNMLQQYPWPGNVRELENAVERAMVVAQEPELRETDFVLKVKAA 393 Query: 630 ---ETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 + + E + I+ VL ETN AA+ L + R TL ++KR G Sbjct: 394 ATMSSTNGTGTPKTLEDIEKEHILHVLDETNW---NQTRAAEMLDIDRVTLHHKIKRYGW 450 Query: 687 DK 688 K Sbjct: 451 QK 452 >UniRef50_C6MX44 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Geobacter sp. M18 RepID=C6MX44_9DELT Length = 460 Score = 537 bits (1385), Expect = e-151, Method: Composition-based stats. Identities = 153/440 (34%), Positives = 231/440 (52%), Gaps = 20/440 (4%) Query: 268 SKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTT 327 + E + + ++ + + T LP G +L ++ AQ + V Sbjct: 20 TLEAAGYAVTAAERGDEGIDLIGKQRFDVVVTDMRLPGADGLEVLKAVRKAQPDTGVVVI 79 Query: 328 TNLNLLRQIAERVAIA----VDNALAYQEIHRLKERL------VDENLALTEQLNNVDSE 377 T ++ E + + + + L ER V+++ L E++ Sbjct: 80 TGYADVQTAVEAMKLGAFDYIAKPFEPAHLLSLVERFLCQTAHVEDSQRLREEVAE-HQR 138 Query: 378 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMN 437 F EI+ S +M SV ++M A++DS+V+I GE+GTGKEL+A A+HN S R ++ +K+N Sbjct: 139 FEEIVSNSPSMLSVFNLIQMAAKTDSSVIIYGESGTGKELVANAVHNRSPRLDKPFIKVN 198 Query: 438 CAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVL 497 CAA+P LLE+++ G+E+GAFTGA ++ G+ E AD + F DE+GDM LQ KLLRVL Sbjct: 199 CAAIPENLLEAEMCGYEKGAFTGALQRKKGKLETADGGTFFFDEIGDMSFPLQAKLLRVL 258 Query: 498 QEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPE 557 + + FER+G + + D+R I AT R L + +FR DLYYR+NV PI LPPLRER + Sbjct: 259 ETRSFERVGGTEPVHVDIRFIFATMRRLPDEIRKGKFREDLYYRINVLPITLPPLRERAD 318 Query: 558 DIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVL 617 DIPLL F R+ GR + I E + L + +PGNVREL++ +E AV V+ Sbjct: 319 DIPLLLHFFVAHFCRKQGRQVLDIAPEAMELLRSYPYPGNVRELKHAVEMAVTFCSDRVI 378 Query: 618 QLSLPDIVLPEPETP------PAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLG 671 S + E A + + E E Q I+ VLK+T G AA+ LG Sbjct: 379 TPSCLPGEIREGSPALQGWRGDAGALESSRKETERQTIINVLKKTGGR---KMAAAKALG 435 Query: 672 LKRTTLLSRMKRLGIDKSAL 691 + R TL ++K +D A+ Sbjct: 436 ISRETLWRKLKEYNVDTDAI 455 >UniRef50_Q1Q1B9 Strong similarity to sigma 54 response regulator protein n=3 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q1B9_9BACT Length = 469 Score = 537 bits (1384), Expect = e-151, Method: Composition-based stats. Identities = 143/432 (33%), Positives = 217/432 (50%), Gaps = 23/432 (5%) Query: 280 DDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAER 339 +++ + + T + ++G +L +K +V T + + Sbjct: 36 SGEGAIKKLSDGNVYDLVVTDLKMKKVNGLEVLNAVKTENPATEVIVITAYGAISTAVQA 95 Query: 340 VAIAVDNA----------LAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMY 389 + + L + K+ L + L ++ + IIG S M Sbjct: 96 IREGAYDYVTKPFRYQEMLKVAKNALEKKELKERLKYLEGEVRE-KYKLEGIIGNSAVMV 154 Query: 390 SVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESD 449 VLK V++++STVLI GE+GTGKELIARAIH R+ V +NC A+P L ES+ Sbjct: 155 EVLKVTADVSRTESTVLITGESGTGKELIARAIHYNGPRSGYPFVVINCGALPENLQESE 214 Query: 450 LFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNK 509 LFGH +G+FTGA +++G F A K ++FLDE+G+ Q KLLR LQ+ E ++G NK Sbjct: 215 LFGHAKGSFTGAVKEKVGLFHHAHKGTIFLDEIGETSASTQVKLLRFLQDGEIRQVGGNK 274 Query: 510 IIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFK 569 I DVR+IAATN +L++ V FR DL+YR+NV IHLP L+ER EDIPLL F Sbjct: 275 SIHVDVRIIAATNENLERAVNQGRFRKDLFYRINVIRIHLPQLKERKEDIPLLVNYFLEL 334 Query: 570 IARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVL--- 626 +L ++ + L N +WPGN+REL+N++ERAV L++ V+ + + Sbjct: 335 YTDKLKKDKRVFSGSAMAVLLNYDWPGNIRELQNIVERAVALSKNQVIGVEALPLPTGGF 394 Query: 627 ------PEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSR 680 PE + +++V E E IV + + G +Q LG+ TTL + Sbjct: 395 VAHNSNPERDVTVKSSIVETLSEQEKNAIVEAMNKYGG---NQTKVSQVLGISTTTLWRK 451 Query: 681 MKRLGIDKSALI 692 +K+ I I Sbjct: 452 IKKYKIKPQHEI 463 >UniRef50_A9A0V6 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Deltaproteobacteria RepID=A9A0V6_DESOH Length = 465 Score = 537 bits (1384), Expect = e-151, Method: Composition-based stats. Identities = 154/463 (33%), Positives = 232/463 (50%), Gaps = 24/463 (5%) Query: 246 QHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPL 305 P VD+ + + + + A M+ + I +P Sbjct: 5 DEPKKNVLVVDDEENMRHMLAAMLTREGYQVETAANGAQALEMVAKQPFDFILCDIKMPR 64 Query: 306 MSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNA----------LAYQEIHR 355 M G L + V + + E + + L + Sbjct: 65 MDGLAFLAHRTEHFPDATVIMMSAYGTIDTAVEALKHGAYDYISKPFKSDEVLLALKKAS 124 Query: 356 LKERLVDENLALTEQLN--NVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGT 413 +ERL EN+AL +Q+ FG+II +S+AM +V + VA D+TVL+ GE+GT Sbjct: 125 ERERLKRENIALRQQIATLGRGYTFGKIIAKSKAMQAVTDLITKVAAHDTTVLVTGESGT 184 Query: 414 GKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELAD 473 GKEL+AR++H S R ++ +NC +P LLES+LFGH +GAFTGA + G E+A Sbjct: 185 GKELVARSLHFNSPRAPNALIPVNCGGIPENLLESELFGHVKGAFTGADKNKTGLCEIAH 244 Query: 474 KSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADRE 533 K +LFLDE+G++P LQ KLLR+LQ++E +G++ D+R++AAT R+L+ VA+ Sbjct: 245 KGTLFLDEIGELPASLQVKLLRLLQDREIRPVGASATRTIDIRIVAATARNLEADVAEGV 304 Query: 534 FRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNME 593 FR DL+YRLNV IHLPPLR+R EDIPLL + F + ++L + I + L L Sbjct: 305 FREDLFYRLNVLHIHLPPLRDRQEDIPLLIETFVQEFNKKLDKTITGLAPAALSRLLAHT 364 Query: 594 WPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAA---------TVVALEGED 644 WPGNVRELEN+IERAV+L G+ + ++ A + Sbjct: 365 WPGNVRELENLIERAVVLAEGDTITPDDLPPGFGTDSAGGPGDALAGFDGYSIKAAQKIF 424 Query: 645 EYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 E +LI + L +T G ++ L + +LL++MK GI+ Sbjct: 425 EKRLIEKALAKTGG---NRTRTSKLLEISHPSLLAKMKEYGIE 464 >UniRef50_B8F9P9 Sigma 54 interacting domain protein n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8F9P9_DESAA Length = 514 Score = 537 bits (1384), Expect = e-151, Method: Composition-based stats. Identities = 179/509 (35%), Positives = 272/509 (53%), Gaps = 12/509 (2%) Query: 185 DNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLD 244 D + T + +++++ + + + + + + + ++ +Y+ Sbjct: 2 DENKFFREATLRICGSIEIEKALFDCLDYLKNFIPAESVYLHFIDLKEKTGVVYAMADGG 61 Query: 245 KQHPAHEQSEVDEAGTLTERVFKSKE--MLLINLHERDDLAPYERMLFDTWGNQIQTLCL 302 + + + R+ + L D A + ML + I++L + Sbjct: 62 GGRQLNIRFDYPAP---VWRLIGDGSDLPEEVLLDRADKGALGKHMLKIAGLSGIRSLMM 118 Query: 303 LPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVD 362 + L G +GV+ E F +L+ LR + A+A+ N+ Y E+ LK L D Sbjct: 119 MRLSLGSKEVGVIAFEARGESRFRREHLHRLRLLQSPFAVAISNSRRYIELLELKNLLAD 178 Query: 363 ENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAI 422 +N L ++L + S EIIG + V++QV VA S VL++GETG GKE+IA AI Sbjct: 179 DNKYLQQELLSQKS--DEIIGADFGLKHVMQQVNKVAPLSSPVLLMGETGVGKEVIANAI 236 Query: 423 HNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEV 482 H S R N +K+NC A+ L++S+LFGH RGAFTGA + GRFE A + S+FLDE+ Sbjct: 237 HKYSSRRNEPFIKVNCGAISETLIDSELFGHVRGAFTGAFENKRGRFERAHQGSIFLDEI 296 Query: 483 GDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRL 542 G++P Q +LLRVLQE EFE +GS K I+ D R+IAATNR+L+ MVA+ FR DLY+RL Sbjct: 297 GELPKAAQLRLLRVLQEMEFEPVGSAKTIKVDARVIAATNRNLEDMVAEGSFRKDLYFRL 356 Query: 543 NVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGR-NIDSIPAETLRTLSNMEWPGNVREL 601 VFPI++PPLRER DIP L + F K R +G S+ ++ L EWPGNVREL Sbjct: 357 KVFPIYIPPLRERACDIPALTQYFMHKKYREMGFAEYPSLAPGAVKRLEAYEWPGNVREL 416 Query: 602 ENVIERAVLLTRGNVLQLSLP----DIVLPEPETPPAATVVALEGEDEYQLIVRVLKETN 657 EN +ERA++++ G L +PE A A+ E I+++L T Sbjct: 417 ENAVERAMIVSGGKTLHFDDSGFEKPRCVPEEAPHDAEDSPAMLDEVISSHIIKMLHRTK 476 Query: 658 GVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 G + G GAA+ +G+ TL ++M++LGI Sbjct: 477 GKINGEDGAARAMGVNPATLRNKMRKLGI 505 >UniRef50_Q2RHS4 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Bacteria RepID=Q2RHS4_MOOTA Length = 748 Score = 537 bits (1384), Expect = e-151, Method: Composition-based stats. Identities = 163/355 (45%), Positives = 221/355 (62%), Gaps = 12/355 (3%) Query: 341 AIAVDNALAYQE--IHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMV 398 A+AV + LA + +L N L ++L +FG+++G S AM V + +E V Sbjct: 387 AVAVYHGLAENRMCLPYFIAQLEKSNFHLRQELKAFQGKFGQLVGNSAAMQEVYRLIEKV 446 Query: 399 AQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAF 458 A++D+TVLI GE+GTGKEL+ARAIH S R+ V +NCAA+P LLES+LFGH RGAF Sbjct: 447 AKTDATVLIRGESGTGKELVARAIHYHSRRSEAPFVSINCAALPETLLESELFGHARGAF 506 Query: 459 TGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLI 518 TGA + G FE A++ ++FLDE+GD+ L LQ KLLRVLQE EF R+G + + +VR++ Sbjct: 507 TGAVTAKKGLFEEANEGTIFLDEIGDISLGLQSKLLRVLQEGEFLRVGETRPTRVNVRVL 566 Query: 519 AATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNI 578 AATNRDL+K V D FR +L YRLNV I LPPLRER +DIPLLA+ F K +RLG+ + Sbjct: 567 AATNRDLEKAVKDGAFRPELLYRLNVITIWLPPLRERRDDIPLLARHFLEKSCQRLGKEV 626 Query: 579 DSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAA--- 635 + E + L +WPGNVRELENVIERAV+LT ++L + Sbjct: 627 NGFTHEAMDALIRADWPGNVRELENVIERAVILTESKRIELGDLPRQFRNMAAGASGWAF 686 Query: 636 ----TVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 + E +LI++ L+E+ GV AA+ LGLKR+TL +KR + Sbjct: 687 TRGMSFKEAVAAYESRLILQALEESQGV---QARAAEILGLKRSTLNEMIKRYNL 738 >UniRef50_D1R5K3 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R5K3_9CHLA Length = 462 Score = 536 bits (1382), Expect = e-151, Method: Composition-based stats. Identities = 165/456 (36%), Positives = 248/456 (54%), Gaps = 26/456 (5%) Query: 255 VDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGV 314 VD+ + + ++ I + + ++ DT + + T +P ++G +L Sbjct: 7 VDDESIVRNFLAETLRRKNIEVVTAESGKKALSLIKDTPFDMVITDMKMPDLTGIDILRK 66 Query: 315 LKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNAL----------AYQEIHRLKERLVDEN 364 K V T + E + + N L A E + LV EN Sbjct: 67 CKEISPNTIVVVITAFGSIENAVEAMKLGAFNYLIKPFSPDTIEAIIEKAKEHLSLVQEN 126 Query: 365 LALTEQLNNVDSEFG-EIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIH 423 L +Q++ DS +IIG S M +L+ V VAQS+++V I GE+GTGKE+IA+AIH Sbjct: 127 QYLRQQVSTGDSRNHFQIIGESPIMKQILRDVTRVAQSNASVFINGESGTGKEVIAQAIH 186 Query: 424 NLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVG 483 S R+ +K+NCAA+P L+ES+ FGHE+GAFTGA+ +R+GRFELA K +L LDE+ Sbjct: 187 ANSARSQFPFIKVNCAAIPETLIESEFFGHEKGAFTGANFKRLGRFELAHKGTLLLDEIT 246 Query: 484 DMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLN 543 ++PL +Q KLLR +QEQEFER+G +K I+ DVRLI+ +NRD+K +A + R DLYYRLN Sbjct: 247 EIPLAVQAKLLRAIQEQEFERVGGSKPIKVDVRLISTSNRDMKDAIAHKILREDLYYRLN 306 Query: 544 VFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELEN 603 V PI+LPPLR+RPEDI LA F K+ + + E+++ L WPGNVREL N Sbjct: 307 VVPIYLPPLRDRPEDILPLAHYFLEKMCMENHKQAKTFSKESIKKLVGYAWPGNVRELAN 366 Query: 604 VIERAVLLTRGNVLQLS-------LPDIVLPEPETPPAATVVA-----LEGEDEYQLIVR 651 ++ERAV++T + + P++ L T T+ + E E +LI+ Sbjct: 367 IVERAVVMTTNSEITPEHLYIENNHPNLPLRTASTLSQNTLTSLPVGMTLQELEKRLIIE 426 Query: 652 VLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 L+ + A+ LG+ TL +++ + Sbjct: 427 TLQAQHN---NRTKTAEVLGISVRTLRNKLNEYNMK 459 >UniRef50_Q1PZT5 Strongly similar to sigma 54 response regulatory protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZT5_9BACT Length = 448 Score = 536 bits (1382), Expect = e-151, Method: Composition-based stats. Identities = 148/410 (36%), Positives = 221/410 (53%), Gaps = 17/410 (4%) Query: 289 LFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNAL 348 + + + +P+M+G L +K + +V T + + + + + L Sbjct: 44 MQERDYDVAILDMNMPVMNGIETLKKVKTIEPTTEVIILTGQGSIENAVQAIKLGAYDYL 103 Query: 349 ----------AYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMV 398 + K +L EN L +++V + +IG S A+ +V K ++ Sbjct: 104 TKPCQLKELDLLLQRALEKRKLSRENFHLKTLVHDVQ-KPSSMIGNSPAIKAVFKMIDKT 162 Query: 399 AQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAF 458 A SD TVLI GE+GTGKEL A+ IH S R ++ V +NCA + LLES+LFGH +GAF Sbjct: 163 APSDVTVLIQGESGTGKELAAKMIHQYSKRADKPFVIVNCATLQESLLESELFGHVKGAF 222 Query: 459 TGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLI 518 TGA+ R+G FE+A+ +LFLDE+G++ + Q KLLRV+Q E R+G N++I D R+I Sbjct: 223 TGAAESRVGLFEIAEGGTLFLDEIGELTVNTQAKLLRVIQSGEIRRVGDNRVITVDARII 282 Query: 519 AATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNI 578 AAT+++L V + FR DLY+RLNV + LP LRER +D+ L + F K + G Sbjct: 283 AATHKNLPLEVKEGRFREDLYFRLNVITLRLPSLRERKDDLTALIQHFLQKFCK--GERT 340 Query: 579 DSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQL-SLPDIVLPEPETPPAATV 637 + E L ++ +WPGN+RELEN IER V+L GN++ + LPD + Sbjct: 341 MDMHPEALHAMTLYDWPGNIRELENTIERTVVLADGNIISIEELPDNIRGRTYEHYGKNG 400 Query: 638 VALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 E E I++VLKE N AA+ LG+ TL ++MK ID Sbjct: 401 EIALSEVEKNHIIQVLKEKNWH---KPLAAKTLGISLKTLYNKMKMYNID 447 >UniRef50_Q1PYI3 Strongly similar to sigma 54 response regulatory protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYI3_9BACT Length = 448 Score = 536 bits (1381), Expect = e-150, Method: Composition-based stats. Identities = 165/423 (39%), Positives = 241/423 (56%), Gaps = 17/423 (4%) Query: 275 NLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLR 334 L + + T LP M G ++L +K + T + ++ Sbjct: 29 TAVGVSSGYDALNQLSRESFDIVITDMKLPGMGGLSLLQEIKKKNSSIAIVVVTAYSSIK 88 Query: 335 QIAERVAIAVDNALAY----------QEIHRLKERLVDENLALTEQLNNVDSEFGEIIGR 384 V D LA E R K++LV +N L E+L + F E++G Sbjct: 89 SAVNAVKHGADEYLAKPVDVEELELVLEKLREKQQLVIQNRLLKEELKD-KYTFSELVGG 147 Query: 385 SEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 444 S M+ + K +E VA S ++VLI+GETGTGKEL+A AIH S R + V ++CAA+ G Sbjct: 148 SPQMHRIFKMIEDVAPSTASVLIMGETGTGKELVAHAIHYRSERAGKPFVALHCAALSEG 207 Query: 445 LLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFER 504 +LES+LFGHE+GAFTGA R GRFELAD +LFLDE+ +M L++Q KLLRVL++ EFER Sbjct: 208 ILESELFGHEKGAFTGAIQSRKGRFELADGGTLFLDELAEMSLKVQVKLLRVLEKGEFER 267 Query: 505 LGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAK 564 +G K I+ DVR IAATNR+L++ V++ FR DL+YRLNV I +PPLRER +DIP+L+ Sbjct: 268 VGGEKTIKVDVRCIAATNRNLEEEVSEGRFREDLFYRLNVINIQMPPLRERKDDIPILSN 327 Query: 565 AFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQL-SLPD 623 F K A++ + I E ++ L + W GN+REL+N IERA++L + + + + LP+ Sbjct: 328 YFAVKYAKKYKKEIKGFDPEAIKALLSHHWQGNIRELQNTIERAIVLCKSDTISVDHLPE 387 Query: 624 IVLPEPETPP--AATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRM 681 ++P+ E P + E E ++I R L+ TNG + AA+ LG+ + + Sbjct: 388 SIMPDNEYIPVIKIPIGTTLKEAEKEIIQRTLQITNGS---KQSAAKILGISTRKIEYKT 444 Query: 682 KRL 684 K Sbjct: 445 KEW 447 >UniRef50_Q2RVQ1 Transcriptional regulator, NifA, Fis family n=3 Tax=Alphaproteobacteria RepID=Q2RVQ1_RHORT Length = 600 Score = 536 bits (1381), Expect = e-150, Method: Composition-based stats. Identities = 157/441 (35%), Positives = 246/441 (55%), Gaps = 15/441 (3%) Query: 187 FRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQ 246 L ++ + S LD++ + +V + Y + + L+ ++ +L + + + + Sbjct: 25 LLTLYEVSKILGSTLDLEHSLHDVLNVLASYMQMRRGVVTLKDAQR-QLEVVAVSGMTLR 83 Query: 247 HPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLM 306 + ++ A + + V + +++ D D +++Q++ +P+ Sbjct: 84 NAVEGEARYPLA--VAQEVVSTAMPMIVPSMAADPRFAAFAAEADGLDDEVQSMICVPIK 141 Query: 307 SGDTMLGVLKLAQ---CEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDE 363 G G L + + + ++ L +A +A V + + ++RL++E Sbjct: 142 GGVKPFGSLSIERHRDRGTRFKFEHDVRFLTMVATLIAQTVS---LERRVVGDRDRLIEE 198 Query: 364 NLALTEQLNNVDSEF-----GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELI 418 L + L + ++GRS AM + QV +A S +TVL+ GE+GTGKELI Sbjct: 199 KARLEKALPKREKPLKGTILENVVGRSSAMMKISAQVRQIAPSRATVLLRGESGTGKELI 258 Query: 419 ARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLF 478 A+AIH LS R+++ +K+NCAA+P LLES+LFGHE+GAFTGA+ +R GRFE+A +LF Sbjct: 259 AQAIHYLSPRSDKPFIKVNCAALPETLLESELFGHEKGAFTGATTERKGRFEMASGGTLF 318 Query: 479 LDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDL 538 LDE+G++ + Q KLLRVLQE EFER+G K I+ DVRL+AATN+DL+ V EFR+DL Sbjct: 319 LDEIGEITVHFQAKLLRVLQEGEFERVGGGKTIKVDVRLVAATNKDLEDAVTRGEFRADL 378 Query: 539 YYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNV 598 YYR+NV PI LP LRER ED+PLLA+ F K GR++ L + +PGNV Sbjct: 379 YYRINVVPIFLPALRERREDVPLLAQFFLTKFNEENGRSL-RFSEGALTAMGGCNFPGNV 437 Query: 599 RELENVIERAVLLTRGNVLQL 619 RELEN + RA L + V+Q Sbjct: 438 RELENCVCRAATLAQDEVIQE 458 Score = 47.9 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 31/245 (12%), Positives = 71/245 (28%), Gaps = 14/245 (5%) Query: 13 GLFDITRTLLQQPDLASLCEALSQLVKRSALADNAAIVLWQAQTQRASYYASREKDTPIK 72 L+++++ L DL + ++ + L AQ Q A Sbjct: 27 TLYEVSKILGSTLDLEHSLHDVLNVLASYMQMRRGVVTLKDAQRQ-LEVVAVSGMTLRNA 85 Query: 73 YEDETVLAHGPVRSILSRPDTLHCSYEEFCETW--PQLDAGGLYPKFGHYCLMPLAAEGH 130 E E + ++S + + +A GL + +P+ Sbjct: 86 VEGEARYPLAVAQEVVSTAMPMIVPSMAADPRFAAFAAEADGLDDEVQSMICVPIKGGVK 145 Query: 131 IFGGCEFIRYDDRPWS---EKEFNRLQTFTQIVSVVTEQIQSRVVNNVDYELLCRERDNF 187 FG R+ DR E + L +++ R V L+ + Sbjct: 146 PFGSLSIERHRDRGTRFKFEHDVRFLTMVATLIAQTVS--LERRVVGDRDRLIEEKARLE 203 Query: 188 RILVAITN-----AVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKN-KLNIYSTH 241 + L + + + + +++ ++ ++ +L + H Sbjct: 204 KALPKREKPLKGTILENVVGRSSAMMKISAQVRQIAPSRATVLLRGESGTGKELIAQAIH 263 Query: 242 YLDKQ 246 YL + Sbjct: 264 YLSPR 268 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 3/42 (7%) Query: 645 EYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 + + IV +++ V AA+ LG+ + +K+ I Sbjct: 557 QRERIVHAMEKAGWV---QAKAARLLGMTPRQIGYALKKHDI 595 >UniRef50_A6EHC6 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Pedobacter sp. BAL39 RepID=A6EHC6_9SPHI Length = 646 Score = 536 bits (1381), Expect = e-150, Method: Composition-based stats. Identities = 173/508 (34%), Positives = 276/508 (54%), Gaps = 12/508 (2%) Query: 192 AITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRK--NKLNIYSTHYLDKQHPA 249 + + V + E + ++A + D + + S R LN++ + + Sbjct: 138 QVEHIVGKQETTAEKIKQLASAMQSLLPYDFLWVTRSSRRGAAGDLNLFRYDSQHYKSYS 197 Query: 250 HEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTL-------CL 302 E+ + D + + + + L+ + + + ++ + ++ + + Sbjct: 198 SEELQADMELSQRDFKLWNSKALVFDGKAIFNGYEFRKLRMENEWIKVLSDHFSLESALV 257 Query: 303 LPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVD 362 + L + + ++T + ++ Q + +A+ + Y + Sbjct: 258 VELKCEEEPFQFI-FFSTIADLYTKVHQGIVNQFHKSLALIAQDIF-YNKREISVAAAEP 315 Query: 363 ENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAI 422 + L E ++S+F IIG+S + V +++++VA D++VLILGE+GTGKE +A I Sbjct: 316 KPQPLKEVQVPLESDFHGIIGQSSLLKDVFRKIQLVAADDTSVLILGESGTGKERVAHTI 375 Query: 423 HNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEV 482 H LS R ++ MV +NCAA+P L+ES+LFGHE+GAFTGA+ +RIG+FE AD S+FLDE+ Sbjct: 376 HKLSPRKSKPMVTVNCAALPLTLIESELFGHEKGAFTGANDKRIGKFEQADGGSIFLDEI 435 Query: 483 GDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRL 542 G++PLE Q KLLRVLQE+E ERLG N + +VR+I ATNR+L+K VA+ FR DLYYRL Sbjct: 436 GELPLEAQVKLLRVLQEKEIERLGGNGTKKINVRIITATNRNLEKEVAEGRFRLDLYYRL 495 Query: 543 NVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELE 602 NVFPI LP LR+R EDIPLL+ F K ++ I + A ++ L +WPGN+RELE Sbjct: 496 NVFPIELPSLRQRKEDIPLLSHHFIKKYSKNASAQIGGVSAASMEELQQYDWPGNIRELE 555 Query: 603 NVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVV-ALEGEDEYQLIVRVLKETNGVVA 661 ++IER+VLL++ + + P + E E I+ +LK G V Sbjct: 556 HLIERSVLLSKEEEITTIIVPTTTPSLAGSNSGEFRIKTMEEMERDHILSILKMCKGKVF 615 Query: 662 GPKGAAQRLGLKRTTLLSRMKRLGIDKS 689 GP GAA+ L + TTL S++K+LGI Sbjct: 616 GPGGAAEILNMPSTTLNSKIKKLGIKYE 643 >UniRef50_Q3A2M3 Two component, sigma54 specific, transcriptional regulator, Fis family n=16 Tax=Bacteria RepID=Q3A2M3_PELCD Length = 492 Score = 536 bits (1381), Expect = e-150, Method: Composition-based stats. Identities = 159/468 (33%), Positives = 236/468 (50%), Gaps = 27/468 (5%) Query: 243 LDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCL 302 ++Q H VD+ ++ E + + + D L + + I + Sbjct: 21 ENRQENQHRILVVDDEESMREFLCILLKRDGYLVDAVSDGQQAVACLKEQNYDLIISDIK 80 Query: 303 LPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIA----VDNALAYQEIHRLKE 358 +P + G +L +K + T + Q + + + +EI + E Sbjct: 81 MPRLDGFGLLDHVKERFASTAMIMITAFSTAEQAVDAMKKGAYDYITKPFKNEEIRLVVE 140 Query: 359 R------LVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETG 412 L ENL L ++L F IIG+S+ M V +E V+ S VLI GE+G Sbjct: 141 NALERMDLRRENLQLKKELGQ-RFSFANIIGKSKVMQGVYDLIEKVSASKVNVLITGESG 199 Query: 413 TGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELA 472 TGKEL+ARAIH S R++R V + C A+P LLES+LFGHE+GAFTGA Q+ G FE+A Sbjct: 200 TGKELVARAIHYNSDRHDRPFVAIYCGAIPENLLESELFGHEKGAFTGAVQQKQGLFEVA 259 Query: 473 DKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADR 532 D +LFLDE+ ++P +Q KLLRV+QE EF ++G + ++ DVRL+AATN+DL + V + Sbjct: 260 DGGTLFLDEIAELPPMMQVKLLRVIQEHEFRKVGGTRDLKVDVRLVAATNKDLAQAVTED 319 Query: 533 EFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNM 592 +FR DLYYRLNV + LPPLR+R EDIPLL F K+ +IP +R + Sbjct: 320 QFREDLYYRLNVIQVGLPPLRDRREDIPLLVSHFLQKLTPGFS---TTIPDGVMRRFLDY 376 Query: 593 EWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGE--------- 643 WPGN+RELEN +ER V+L + + + L E Sbjct: 377 HWPGNIRELENTVERCVVLGGKGEITEDSLPPHMLCISGTGDQQLTELPEEGLDLDDYLG 436 Query: 644 -DEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSA 690 E ++++ L T GV K AA+ L + ++ R+ + GI+ Sbjct: 437 AIEKDILLKALDRTGGV---RKRAAELLHITFRSIRYRLAKFGIEAEG 481 >UniRef50_B8FMY7 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FMY7_DESAA Length = 525 Score = 535 bits (1380), Expect = e-150, Method: Composition-based stats. Identities = 174/507 (34%), Positives = 261/507 (51%), Gaps = 18/507 (3%) Query: 192 AITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQHPAHE 251 T A+ +++ ++ + Y D ++I L + D+++P Sbjct: 10 ETTQALGEDGELEAVIHHCLLVLAKYVPADGLAIQLLEPSLKSIRTIVWQPRDEENPISG 69 Query: 252 QSEVDEAGTL------TERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPL 305 + + T +S+ + I + R + P L G + + L Sbjct: 70 GFPEEMKEAILLMPPKTRDFLRSQTLPDIRIINRPEQDPISETLLAFTGRNYSS-ISMFL 128 Query: 306 MSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENL 365 G + +A +T +L L + ++AV L QE+ +LK L D Sbjct: 129 KREGKRFGSVTVAAHGRDRYTQEDLELFSLLKTPFSMAVGALLLTQEVSKLKSILDD--- 185 Query: 366 ALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNL 425 +L EIIGR++ + V+K + ++A ++ VLI GETG GKELIA AIH++ Sbjct: 186 --RLELQKKRITPNEIIGRNQGLRDVVKMINLIAPQNTPVLINGETGVGKELIANAIHSM 243 Query: 426 SGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDM 485 S R + ++ +NC A+P L+ES+LFGHE GAFTGA+ +R GRFE A ++FLDE+G++ Sbjct: 244 SPRKDGPLIIVNCGAIPQTLVESELFGHEAGAFTGAAERRKGRFERAHHGTIFLDEIGEL 303 Query: 486 PLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVF 545 ++Q KLLRVLQ QE ER+G +K I+ + R+IAAT+R+L +MV++ FR DLYYR+NVF Sbjct: 304 KPDIQVKLLRVLQSQEIERVGGSKSIKVNARIIAATHRNLARMVSEGAFREDLYYRINVF 363 Query: 546 PIHLPPLRERPEDIPLLAKAFTFKIARRLGR-NIDSIPAETLRTLSNMEWPGNVRELENV 604 PI +PPLR R DIP L F K +R L + + + L N WPGNVRELEN+ Sbjct: 364 PIVVPPLRTRTNDIPALTDHFIRKKSRDLKIYPAPKLDNKAIYHLMNYHWPGNVRELENI 423 Query: 605 IERAVLLTRGNVLQLSLPDIVLPEPET-----PPAATVVALEGEDEYQLIVRVLKETNGV 659 IERA++L G L +I E + I VL T G Sbjct: 424 IERALILWDGGALSFKNLNIAKTEGGAKFGAYKEKSKTPLPLETVVADHIENVLALTKGR 483 Query: 660 VAGPKGAAQRLGLKRTTLLSRMKRLGI 686 + GP GAA+ L + +TL ++MK+LGI Sbjct: 484 INGPNGAAKILDVNPSTLRTKMKKLGI 510 >UniRef50_Q39TT6 Transcriptional regulator, Fis family / DNA-binding protein Fis n=1 Tax=Geobacter metallireducens GS-15 RepID=Q39TT6_GEOMG Length = 473 Score = 535 bits (1380), Expect = e-150, Method: Composition-based stats. Identities = 181/361 (50%), Positives = 250/361 (69%), Gaps = 5/361 (1%) Query: 331 NLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYS 390 + ++ + + A E+ LK RL EN+ L ++ + + F EI+ + Sbjct: 116 SFIKDMTQHFQTQEALRRALDEVQTLKNRLEAENVYLMNEI-KLSNNFDEIVTGNPIFMK 174 Query: 391 VLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDL 450 L+ VE VA +D++VLILGETG GKELIARAIHNLS R +R ++++NCAA+PA L+E++L Sbjct: 175 ALQLVEQVAPTDASVLILGETGVGKELIARAIHNLSNRRDRPLIRLNCAALPATLMENEL 234 Query: 451 FGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKI 510 FGHERGAFTGA+ ++ GRF+LAD +LFLDEVGD+P+ELQ KLLRVLQE EFERLG + Sbjct: 235 FGHERGAFTGANCRKPGRFDLADGGTLFLDEVGDLPMELQSKLLRVLQEGEFERLGGAET 294 Query: 511 IQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKI 570 I+ DVR++AAT+ DLK ++A+ FRSDLYYRLNVFPI PPLRER EDIPLL + F Sbjct: 295 IKVDVRILAATHVDLKALLAEGRFRSDLYYRLNVFPIQCPPLRERREDIPLLVRHFVKAS 354 Query: 571 ARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPE 630 + G++I+ IP + +L WPGN+REL+NVIERAV+++RGN L++ ++ + Sbjct: 355 CEKNGKSIELIPRHVMESLEGYPWPGNIRELQNVIERAVIISRGNKLEIDSLPKMVIAAD 414 Query: 631 TPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSA 690 P ++ E + I+R L+ T V GPKGAA+ LGLKRTTL +RM++LGI++ Sbjct: 415 AAP----ISPLEVTEREHIIRALETTAWRVGGPKGAAEILGLKRTTLQARMRKLGINRQG 470 Query: 691 L 691 L Sbjct: 471 L 471 >UniRef50_B5ZJF6 Transcriptional regulator, NifA, Fis Family n=4 Tax=Gluconacetobacter diazotrophicus RepID=B5ZJF6_GLUDA Length = 581 Score = 535 bits (1379), Expect = e-150, Method: Composition-based stats. Identities = 172/565 (30%), Positives = 270/565 (47%), Gaps = 73/565 (12%) Query: 190 LVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQHPA 249 L I+ + + + ++ V + + D+++ + L N + + + A Sbjct: 27 LHEISKILCAPTETVGIIRNVLAVLESFVDLNNAVVALFDAAGN---VETIIGTEADDAA 83 Query: 250 HEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGD 309 + ++ S++ LL+ D + T G + +P++S D Sbjct: 84 ARRYFDSIPEQAVGQIAVSRQPLLVPDVTGDTRYGFATSQAWTVGAGRIGVIGVPILSRD 143 Query: 310 TMLGVLKLAQCEEK---VFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLA 366 ++GV+ L + V + ++ LL +A + V ++ + R +E L+ ++ Sbjct: 144 RLVGVMLLDRPAIPEESVVGSMDVCLLSMVAGLMGQMV---RLHRLVQRDRENLLHDSGL 200 Query: 367 LTEQLNNVDSE-FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNL 425 D + I+G S A+ +VL++VE+VA+SD TVL+ GE+GTGKEL A+AIH Sbjct: 201 AQPAAPVADGGGYMGIVGDSPALRAVLQKVEIVARSDVTVLLRGESGTGKELFAQAIHQA 260 Query: 426 SGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDM 485 S R+ + VK+NCAA+P +LES+LFGHE+GAFTGA QR GRFELAD +LF+DE+G++ Sbjct: 261 SPRHRKPFVKLNCAALPESVLESELFGHEKGAFTGAIGQRKGRFELADGGTLFMDEIGEI 320 Query: 486 PLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVF 545 Q KLLRVLQE EFER+G + ++ DVR++ ATNR+L++ V+ FR+DLYYRL+V Sbjct: 321 SPSFQAKLLRVLQEGEFERVGGTRTLKVDVRVVTATNRNLEEAVSKGRFRADLYYRLSVI 380 Query: 546 PIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVI 605 PI LPPLR+RP DIP+LA F + R +I ++ + L+ +PGNVRELEN I Sbjct: 381 PIFLPPLRDRPTDIPMLANEFLRRFN-ETNRTSLTIASDGMDVLTTCYFPGNVRELENCI 439 Query: 606 ERAVLLTRGNVLQLSL---------------PDIVLPEPETPPAATVVA--LEGEDE--- 645 R L G + + P P P PAA+ VA E Sbjct: 440 RRTATLAPGQTIGAADFACRSDGCLSSIFWRPAAPAPGPGRHPAASDVAGDTGAATELPV 499 Query: 646 ---------------------------------------YQLIVRVLKETNGVVAGPKGA 666 ++ ++ V A Sbjct: 500 LPAPRSSSQSSPQSSAAPDPATCPSSAVCSAAQGEWSPQRDELLEAMETAGWV---QAKA 556 Query: 667 AQRLGLKRTTLLSRMKRLGIDKSAL 691 A+ LGL + +++ GI Sbjct: 557 ARILGLTPRQIGYALRKNGISIKKF 581 >UniRef50_A9EN62 Sigma-54 dependent transcriptional regulator n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9EN62_SORC5 Length = 648 Score = 535 bits (1379), Expect = e-150, Method: Composition-based stats. Identities = 169/530 (31%), Positives = 263/530 (49%), Gaps = 23/530 (4%) Query: 174 NVDYELLCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDID-DISIVLRSHRK 232 + R+ + A + + D+DE+++E+A + +++VLR + Sbjct: 125 EPAEAKIERDPSALSAMYAAQKRIGAANDLDEVLAEIADAVLALVPSSTHVTVVLRDDDQ 184 Query: 233 NKLNIYSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLF-- 290 + +S + G V ++ + + ER + + + Sbjct: 185 E---PGAAPAAFVPVLTRVRSASGKGGPPAGPVPITRSVYRKVIKERAAVLAADAPIEVG 241 Query: 291 ---DTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFT-TTNLNLLRQIAERVAIAVDN 346 G I++ +PL G+ ++GVL+ +L L +A ++AV N Sbjct: 242 QSESLMGASIRSTLAVPLWKGEEIIGVLQADNRSVPGMLNAGDLETLLVLAANASLAVAN 301 Query: 347 ALAYQEIHRLKERLVDENLALTEQLNNVDSEFG---EIIGRSEAMYSVLKQVEMVAQSDS 403 A + + +ERL EN L + G +IIG S+AM V+ Q++ V + Sbjct: 302 ARLIKRLVLAEERLQKENSFLKGREERRRGGGGGAVDIIGNSDAMRKVIGQLDKVVDTRV 361 Query: 404 TVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASA 463 TVLI GETGTGKELIA A+H S R ++ V NCAA+ LLES+LFGH++G+FTGA+ Sbjct: 362 TVLIEGETGTGKELIAAAVHYRSRRRDKLFVAQNCAALAESLLESELFGHKKGSFTGATE 421 Query: 464 QRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNR 523 ++ G FE+AD +LFLDE+ + PL LQ KLLR LQE E +G+ +VR++AATNR Sbjct: 422 EKKGLFEIADGGTLFLDEITETPLSLQSKLLRALQEGEIRPVGATSPKHVNVRIVAATNR 481 Query: 524 DLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPA 583 +L+ VA FR DLYYRL VFPI LPPLRER +DI LLA F + A +G+ Sbjct: 482 NLEDEVAKGRFREDLYYRLKVFPIRLPPLRERRDDISLLAAHFLERYADEIGKPCGGFSQ 541 Query: 584 ETLRTLSNMEWPGNVRELENVIERAVL-LTRGNVLQLSLPDIVLPE------PETPPAAT 636 + + + +WPGNVREL+N ++R V+ L G L + + P + Sbjct: 542 QAMELMVAYDWPGNVRELQNEVQRIVIQLEPGAFGTPELLSPRIRQVEGLVARAGTPKGS 601 Query: 637 VVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 + + E ++ L+ G AA+ LG+ R L ++++ GI Sbjct: 602 LKEMMDAVEKFFLLEALR---GHNNNKTNAAKSLGITREGLHKKLRQYGI 648 >UniRef50_A8ZZC1 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZZC1_DESOH Length = 926 Score = 535 bits (1379), Expect = e-150, Method: Composition-based stats. Identities = 188/570 (32%), Positives = 277/570 (48%), Gaps = 29/570 (5%) Query: 124 PLAAEGHIFGGCEF-IRYDDRPWSEKEFNRLQT-FTQIVSVVTEQIQSRVVNNVDYELLC 181 P+ F ++ DD + ++ + ++ Sbjct: 377 PVQLAKTRFTLMRIHLKRDDPAEARRQARKAWKELAGYGETFFPDDLRHLLAEEPAREPT 436 Query: 182 RERDNFRIL--VAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLR-SHRKNKLNIY 238 E +L + I + ++ D L + + + + YF + ++ K + Sbjct: 437 PEVKEEFLLRFIDIISELMPGPAPDRLFTRLVQATNRYFGAERGALFWFSDTPKQTPALR 496 Query: 239 STHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQ 298 + L + + A L ++ +L+ +R D + + Sbjct: 497 AACNLTETEIFSNAFRSNLA--LVFDAWREGRSILVRRGDRSDD-----------PYREK 543 Query: 299 TLCLLPLMSGDTMLGVLKLAQCE-EKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLK 357 + LP GVL F + L ++ + +++A Sbjct: 544 AILCLPFQIEGKPRGVLYHDNAYVTDCFNFLDPAQLNRLVHTLGSYIEHAWDLSR----- 598 Query: 358 ERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKEL 417 E L + + + EI+G S + +VL QV+ VA +DSTVLILGETG GKEL Sbjct: 599 ---GFEKLRPPLAVPSTVTGTVEIVGESSRIKAVLTQVDQVAPTDSTVLILGETGVGKEL 655 Query: 418 IARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSL 477 +AR IH S R + ++ ++ A+P GL+ES+LFGHE+GAFTGA Q+ G ELA + +L Sbjct: 656 VARRIHQQSRRCDMPLIVVDPTAIPEGLVESELFGHEKGAFTGADRQKKGLLELAHQGTL 715 Query: 478 FLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSD 537 F+DEVG++P +Q KLLR LQE+ +RLG K + +D RLIAATNRDL VA FR D Sbjct: 716 FIDEVGEIPKSIQVKLLRALQEKTIQRLGGTKPLFSDFRLIAATNRDLAGQVAAGRFRED 775 Query: 538 LYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGN 597 LYYRLNV PI +PPLRER +DI LLA F + + R R + E + L WPGN Sbjct: 776 LYYRLNVIPITVPPLRERKQDIVLLAACFLRRHSLRHNRPAMVLSPEVQQRLCAYPWPGN 835 Query: 598 VRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETN 657 VRELENVIER VLL+ G+ L+L LP P T + E + + I VL++T Sbjct: 836 VRELENVIERGVLLSTGDHLELDLPAGHTRPGADP--FTDLPTLDELQRRYIHHVLEKTG 893 Query: 658 GVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 G +AGP GAA+ LG+KRT+L +RMKRL + Sbjct: 894 GKIAGPDGAAKILGMKRTSLYNRMKRLNVR 923 >UniRef50_C2KAU4 Sigma-54-dependent transcriptional regulator n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=C2KAU4_9FLAO Length = 519 Score = 535 bits (1378), Expect = e-150, Method: Composition-based stats. Identities = 187/514 (36%), Positives = 288/514 (56%), Gaps = 12/514 (2%) Query: 178 ELLCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNI 237 + L + ++ +T + + LD +L + +D + K + I Sbjct: 13 KRLQEMQKEQLMISRLTKELSTILDKKQLQLVINTSFKTELGFNDCM--MIRDIKGNIEI 70 Query: 238 YSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQI 297 ++ H +Q + S E+LL +L E L G ++ Sbjct: 71 LGIGTENQNHTTDQQL-----DRYVKNCLDSAELLLFDLKELSPLPSCFTKA-KNSGMRM 124 Query: 298 QTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLK 357 LP +S VL L T +L I+ +++I N +++ + Sbjct: 125 AVGLGLPAVSESK--NVLFLFYKSFISRDTIPERILNGISTQLSITFHNIDVQEQLKTFQ 182 Query: 358 ERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKEL 417 + + ++ + F I+G+SEAM + +Q+ VA S S V+I GETGTGKEL Sbjct: 183 GNI-RDFPKEVKEEKKSEHGFHGIVGQSEAMQFIFEQITQVAPSQSNVIIFGETGTGKEL 241 Query: 418 IARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSL 477 IA+A+H LS + ++M+++NCAA+PA L+ES+LFGHE+G+FTGA+ QR G+FE A S++ Sbjct: 242 IAQAVHELSEFSGKKMIRINCAAIPANLIESELFGHEKGSFTGATEQRKGKFEQAHNSTI 301 Query: 478 FLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSD 537 FLDE+G++PLELQ +LLRVLQE+E ER+G NK I+ + R+I ATNR+L+K VA+ FR D Sbjct: 302 FLDEIGELPLELQARLLRVLQEKEIERIGGNKRIKVNARIITATNRNLEKEVAEGRFRLD 361 Query: 538 LYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGN 597 LYYRLNVFPI LPPLRER EDIPLLA F K+ + G+ I+ ++ + W GN Sbjct: 362 LYYRLNVFPIELPPLRERKEDIPLLADYFLEKLYPKTGKKINGFSQNVVKMMMANPWLGN 421 Query: 598 VRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETN 657 +RELEN++ER++L +G++++ V+ T V E E + I++++K+ N Sbjct: 422 IRELENMVERSMLTAKGDIIREMDFPKVINYQNTDQEVQVK-TLQEFEKEYILKIIKKCN 480 Query: 658 GVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSAL 691 G + G GAA+ LGL TTL+S+M++LGI+K Sbjct: 481 GRIFGEIGAAKLLGLPPTTLISKMQKLGIEKKHY 514 >UniRef50_A6GDL8 Sigma-54 dependent transcriptional regulator, Fis family protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GDL8_9DELT Length = 590 Score = 534 bits (1377), Expect = e-150, Method: Composition-based stats. Identities = 163/522 (31%), Positives = 245/522 (46%), Gaps = 47/522 (9%) Query: 197 VLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQHPAHEQSEVD 256 + +++D L+ V I + D + ++ L R L H P E+ +D Sbjct: 76 LTRGVELDALLVTVVDSIVEHLDAERGTLYLVDGRSRTLTSVVAHL-----PELERIRLD 130 Query: 257 EAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMS-GDTMLGVL 315 + V +++ ++ D + + G +++ LP+ ++GVL Sbjct: 131 FGQGVAGTVAAQGQIIAVSDPGADPRF--DASIDRQTGFSTRSMLALPIRDSAGEVIGVL 188 Query: 316 KLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHR---LKERLVDENLALTEQLN 372 +L FT + +A + Y ++ L+ E E+ + Sbjct: 189 QLLNAGRGQFTLADQAKATTLATSAGQVLQATSLYADLRARSPLEREADPEPSEAVEEPD 248 Query: 373 --------NVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHN 424 F +I+G S AM V V A +D+TVLI GE+GTGKELIARA+H Sbjct: 249 PSQSQIRPGPKYTFNQIVGESRAMRQVYAIVRKAAGTDATVLITGESGTGKELIARAVHV 308 Query: 425 LSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGD 484 S R + VK++C +P L+E++LFGHERGAFTGA G+FE+AD +LF+DE+G+ Sbjct: 309 NSPRREQAFVKVDCTTLPEALIENELFGHERGAFTGAHRTAPGKFEVADGGTLFIDEIGE 368 Query: 485 MPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNV 544 +PL LQ KLLRVLQ++EFER+G I+TD+R+I AT+RDL MV FR DLYYR+ V Sbjct: 369 LPLTLQGKLLRVLQDREFERVGGTTTIRTDIRVICATHRDLPAMVDAGAFREDLYYRVRV 428 Query: 545 FPIHLPPLRERPE-DIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELEN 603 PI LPPLR+R D L + F + RR GR I + L ++PGN+RELEN Sbjct: 429 VPIELPPLRDRGSADRLRLIEHFVDRYGRRHGRPIHRVTKAAQARLLEHDFPGNIRELEN 488 Query: 604 VIERAVLLTRGNVLQLSLPDIVLPEPETP------------------------PAATVVA 639 IE AV+L+ + + + + + Sbjct: 489 CIESAVVLSDEGTIDVDDLPLAPRKAKRGRTQQGSVPTETGQSSGHSGPNLGLQLGDPTL 548 Query: 640 LEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRM 681 E I V++ G AA+RLG+ R TL ++ Sbjct: 549 SLAAIERAHIEAVVQACEG---NQSEAARRLGIGRNTLARKL 587 >UniRef50_D2R1I6 Sigma 54 interacting domain protein n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R1I6_9PLAN Length = 539 Score = 534 bits (1376), Expect = e-150, Method: Composition-based stats. Identities = 185/448 (41%), Positives = 261/448 (58%), Gaps = 11/448 (2%) Query: 246 QHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPL 305 + ++ K+ L + D +R +I + PL Sbjct: 94 ERLDGTFRRFPVGVRKVGQIAKTGRSLEVADVAHDHGWAADRTWIS--NERIASFAGHPL 151 Query: 306 MSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENL 365 + +LGVL L + + LR IA+ +A A+ NA A EI LK+RL EN Sbjct: 152 LHRGEVLGVLGLFARQSP--GESCFEWLRMIADHLAAAIANARALDEIDSLKKRLEQENE 209 Query: 366 ALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNL 425 L E++ + FG++IG+S ++ + +Q+E+VA +DS VLILGE+GTGKE++AR +H Sbjct: 210 YLREEVQQIT-SFGDLIGQSPSLQATTRQIELVAPTDSAVLILGESGTGKEVVARELHRR 268 Query: 426 SGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDM 485 S R +R ++K+NCAA+P L ES+ FGH +G+FTGA R GRFELAD+ +LFLDE+G++ Sbjct: 269 SRRADRPLIKVNCAAIPRELYESEFFGHAKGSFTGALRDRAGRFELADRGTLFLDEIGEI 328 Query: 486 PLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVF 545 PL+LQ KLLRVLQE E ER+G + + DVR+IAATNR+L+ FR DL+YRL+VF Sbjct: 329 PLDLQAKLLRVLQEGELERIGEERTRRIDVRIIAATNRNLRTEAEAGRFRQDLFYRLSVF 388 Query: 546 PIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVI 605 P+ LPPLR+R EDIPLLA+ + + +R+LGR + ++ L WPGNVREL++V+ Sbjct: 389 PMELPPLRKRVEDIPLLAEHYLDRFSRQLGRPRPRLTLAHVQDLQRYPWPGNVRELQHVL 448 Query: 606 ERAVLLTRGNVLQLSLPDIVLPEPETPPAAT------VVALEGEDEYQLIVRVLKETNGV 659 ERA ++ LQ P L E P + A E E I + L +NG Sbjct: 449 ERACIVATDGKLQFDFPKDQLKRREEPAEPSSPQHILTAAELRELEASNIRKALAASNGK 508 Query: 660 VAGPKGAAQRLGLKRTTLLSRMKRLGID 687 + G GAA RL +K TTL SR+K LGI Sbjct: 509 IYGKNGAASRLAMKPTTLASRIKALGIR 536 >UniRef50_C8WE21 Transcriptional regulator, NifA, Fis Family n=4 Tax=Alphaproteobacteria RepID=C8WE21_ZYMMN Length = 568 Score = 534 bits (1375), Expect = e-150, Method: Composition-based stats. Identities = 161/554 (29%), Positives = 251/554 (45%), Gaps = 64/554 (11%) Query: 190 LVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQHPA 249 L I+ + + ++ L+ V + + D+D I + Sbjct: 27 LYEISKILCAPMETVTLIKRVISVLESFIDLDHAIIAFFDEDQEA---EILVGAKSDQQG 83 Query: 250 HEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGD 309 + + ++ K ++I +D R + + +P++ D Sbjct: 84 AKIYFDSIPEQIVGQIVTGKMPVIIRDISKDPYFSNSRSHIWHINQK-SCVIGVPILDRD 142 Query: 310 TMLGVLKLAQC-----EEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDEN 364 + G+L + + E + + LL +A + A +Q I R E L+ ++ Sbjct: 143 KVSGILLIDRPTPRNEREALAPDRDARLLSMVAALLG---QTARLHQMIRREHEFLLRQS 199 Query: 365 LALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHN 424 Q D IIG S + S+L+++ ++A+++ TVL+ GE+GTGKEL A+AIH Sbjct: 200 SHTAPQ-QAEDMPHPRIIGDSPIIRSILEKINLIAKNNVTVLLRGESGTGKELFAQAIHQ 258 Query: 425 LSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGD 484 S R +K+NCAA+P +LES+LFGHE+GAFTGA+ R GRFELAD +LFLDE+G+ Sbjct: 259 ASPRKGLPFIKLNCAALPESVLESELFGHEKGAFTGAAQMRKGRFELADGGTLFLDEIGE 318 Query: 485 MPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNV 544 + Q KLLRVLQE EFER+G K ++ +VR+IAATN +L++ V+ FR+DLYYRL+V Sbjct: 319 ISPNFQAKLLRVLQEGEFERVGGTKTLKVNVRVIAATNVNLEEAVSRGNFRADLYYRLSV 378 Query: 545 FPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENV 604 PI LPPLRE P DIPLLAK F + +I L LS+ +PGN+RELEN Sbjct: 379 IPIFLPPLREHPSDIPLLAKEFLRHFNLE-NKTHLTIDQNALDVLSHCYFPGNIRELENC 437 Query: 605 IERAVLLTRGNVLQLSL-------------------------------------PDIVLP 627 I R L R + P Sbjct: 438 IRRTATLARNTEITAEDFTCYNDNCLSSIFWHREEEKTPHVCKNHGSEGEISECPSAQHC 497 Query: 628 EPETP----------PAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTL 677 + + P E + + ++ +++ V AA+ LG+ + Sbjct: 498 QAASNAESDKTDLAFPKEKTTQSEFRSQKEQLIDAMEQAGWV---QAKAARILGMTPRQI 554 Query: 678 LSRMKRLGIDKSAL 691 +++ GI Sbjct: 555 GYALRKNGISIKKF 568 >UniRef50_B8JAZ2 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Anaeromyxobacter RepID=B8JAZ2_ANAD2 Length = 481 Score = 534 bits (1375), Expect = e-150, Method: Composition-based stats. Identities = 161/423 (38%), Positives = 231/423 (54%), Gaps = 16/423 (3%) Query: 276 LHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQ 335 + E +D A + + + + T +P + G +L ++ A E +V T + Sbjct: 55 VEEAEDGASATQRVQHESFDVVLTDLRMPTVDGMEVLRAVQQASPETQVIVMTAYGTIES 114 Query: 336 IAERVAIAVDNALA----------YQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRS 385 E + + LA K RL+ E E+ I+GRS Sbjct: 115 AVEAIRRGAYDFLAKPFKESEVLLRVAKALEKRRLLGEVNLFAEEFRK-RYGLEHIVGRS 173 Query: 386 EAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGL 445 AM VL +V VA +D+TVL+ GE+GTGKEL+ARA+H S R+++ V +NCAA+ L Sbjct: 174 PAMREVLDRVLRVAPTDATVLVTGESGTGKELVARALHVTSRRSDKPFVPVNCAAITDTL 233 Query: 446 LESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERL 505 LES+LFGH RGAFTGA+ R G FE A+ +LF+DE+G+ Q KLLR LQE E R+ Sbjct: 234 LESELFGHARGAFTGATRARRGMFEEANGGTLFIDEIGETSPGFQAKLLRALQEGEIRRV 293 Query: 506 GSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKA 565 G + +Q +VR+IAATN+DL++ +A+R FR DL+YRLNV P+ +PPLRER ED+PLLA Sbjct: 294 GESSPVQVNVRIIAATNQDLRRAIAERRFREDLFYRLNVVPLRIPPLRERREDVPLLAAH 353 Query: 566 FTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIV 625 F + +R G + E + +L +WPGNVRELEN+IE+A L G ++ + I Sbjct: 354 FLQRFVQRTGSE-RVLTPEAVASLVAHDWPGNVRELENIIEQAAALCTGREIRAADVQIE 412 Query: 626 LPEPETPPAA-TVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRL 684 A T+ + E + I L + A+ LG+ TTL +MKRL Sbjct: 413 ARAAPAGGAGVTLADAVEDTERRAITAALARCGNDL---GRVARDLGISGTTLWRKMKRL 469 Query: 685 GID 687 GI+ Sbjct: 470 GIE 472 >UniRef50_Q1D1F9 DNA-binding reponse regulator HsfA n=3 Tax=Myxococcus RepID=Q1D1F9_MYXXD Length = 485 Score = 534 bits (1375), Expect = e-150, Method: Composition-based stats. Identities = 153/449 (34%), Positives = 232/449 (51%), Gaps = 30/449 (6%) Query: 259 GTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLA 318 +T+ + + ++ + LA + D + + +P +SG +L +K Sbjct: 20 KAVTQILQREGHPVVAIDDAVEGLAAAK----DPTIDVVVLDIKMPNLSGMDLLRGIKAD 75 Query: 319 QCEEKVFTTTNLNLLRQIAERVAIAVDNAL----------AYQEIHRLKERLVDENLALT 368 + + +V T + E V + L + + + + + Sbjct: 76 RPDVEVIMMTAFATVETAVEAVKAGAYDYLTKPFENIDEVSLTVAKAAERKALKDRTRAL 135 Query: 369 EQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGR 428 E+ V S+F ++IG+S M SV K VE V+ S +TVLI GE+GTGKEL+ARAIH S R Sbjct: 136 EEALTVRSQFEDLIGQSTQMRSVFKLVETVSHSTATVLIQGESGTGKELVARAIHYRSAR 195 Query: 429 NNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLE 488 ++ V +NC+A+ LLES+LFGH +G+FTGA+ + G FE AD ++FLDE+GD+P Sbjct: 196 KDKPFVAVNCSALTETLLESELFGHVKGSFTGATGNKKGLFEAADGGTIFLDEIGDVPPA 255 Query: 489 LQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIH 548 Q +LLRVLQE E +R+G+N+ ++ DVR+IAAT+ DL + +FR DL+YRLNV I Sbjct: 256 TQVRLLRVLQEGEVKRVGANEPVKVDVRVIAATHVDLSRAKEQGKFREDLFYRLNVITID 315 Query: 549 LPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERA 608 LPPLR+RPED+PLLA F A + + + I + L+ W GNVRELENVIERA Sbjct: 316 LPPLRDRPEDVPLLAHHFLKLYASKADKKVTGISPRAMEALTCNRWTGNVRELENVIERA 375 Query: 609 VLLTRGNVLQLSLPDIVLPEPETPP-------------AATVVALEGEDEYQLIVRVLKE 655 V+LT V+ + P A E + + +L++ Sbjct: 376 VVLTGNEVIDVEDLPPGFQSAPQPDSTVEVFSLAHLPYAQAKRLAMRAFERRYLSALLEK 435 Query: 656 TNGVVAGPKGAAQRLGLKRTTLLSRMKRL 684 N AA+ G+ R+ +K+ Sbjct: 436 NN---QNVSSAARAAGVDRSNFRRLLKQY 461 >UniRef50_A6M003 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Bacteria RepID=A6M003_CLOB8 Length = 472 Score = 534 bits (1375), Expect = e-150, Method: Composition-based stats. Identities = 148/468 (31%), Positives = 228/468 (48%), Gaps = 27/468 (5%) Query: 244 DKQHPAHEQSEVDEAGTLTERVFKSK-EMLLINLHERDDLAPYERMLFDTWGNQIQTLCL 302 D + V + V ++ + + + M + + Sbjct: 8 DYNMTESVRVLVADDELSLRMVLQTALNKVGYEVDTVKNGKEALCMAQENHYDVAILDIR 67 Query: 303 LPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALA----YQEIHRL-- 356 +P + G + + + T + + + E+ + Sbjct: 68 MPEVDGLQAFYEIHKIKPNLPIILMTAFGSSETAVNAMKHGAYDYILKPFNLDEVKIIVS 127 Query: 357 ----KERLVDENLALTEQLNN---VDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILG 409 ++L E + LT+++ G+I+G S + V K + VA S +TVL+ G Sbjct: 128 RAIRMQQLTKEVVYLTQEVQEMGMTAMTPGKIVGESSKIQEVYKIIGRVANSKATVLLTG 187 Query: 410 ETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRF 469 E+GTGK ++A+AIH S R + +++NC ++P GLLES++FGHE+GAFT A Q+ G+F Sbjct: 188 ESGTGKGMVAKAIHYASDRREKPFIQVNCGSIPEGLLESEIFGHEKGAFTSAFFQKPGKF 247 Query: 470 ELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMV 529 ELA+ +LFLDE+ +M LQ KLLRVLQE+EFER+G K T+VR+IAATNRDL K + Sbjct: 248 ELAEGGTLFLDEIAEMSPNLQVKLLRVLQEKEFERVGGTKTFHTNVRIIAATNRDLNKEI 307 Query: 530 ADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTL 589 +++ FR DLYYRLNV I LPPL ER EDI LLA F + + +GRN E L Sbjct: 308 SEKSFRKDLYYRLNVVSICLPPLCERGEDIVLLADYFLKRFSVEVGRNGMFFAPEVLDIF 367 Query: 590 SNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAA----------TVVA 639 N WPGN+RELEN +E A++++ V+ + + + + Sbjct: 368 RNYSWPGNIRELENAVEHAIIMSNTRVILPENLPLSIKVEDVEADGTIILGDDSFKPLRE 427 Query: 640 LEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 + E E + I ++ T G AA+ L + R LL ++ ID Sbjct: 428 VLLEVEKRHISEAIERTGG---NRTQAAKLLQISRRALLYKINENNID 472 >UniRef50_Q7UK84 Probable two-component response regulator n=1 Tax=Rhodopirellula baltica RepID=Q7UK84_RHOBA Length = 654 Score = 533 bits (1374), Expect = e-150, Method: Composition-based stats. Identities = 164/555 (29%), Positives = 266/555 (47%), Gaps = 43/555 (7%) Query: 147 EKEFNRLQTFTQIVSVVTEQIQSRVVNNVDYELLCRERDNFRILVAITNAVLSRLDMD-E 205 + + L+ + R N L + AV +LD D + Sbjct: 124 PADSDTLKMLATALGRFL--WLQRNHQNDARRLWQTSKMLQHA------AVWQQLDSDAQ 175 Query: 206 LVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQHPAHEQSEVDEAGTLTERV 265 L++ +A + + +I L R KL EV++ + Sbjct: 176 LLASMADCACEVLNCERATIFLWDKRTKKLIGRPAIG-----IEGGVLEVEDNAGIVGEA 230 Query: 266 FKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLM-SGDTMLGVLKLAQCEEKV 324 S + D+ R + ++L +P++ S D ++GV + Sbjct: 231 LHSGSPRWWSAGGTDEGRVNRR-IDQAQNFTTRSLLAVPMVNSRDQVIGVFEGINARPGD 289 Query: 325 -----FTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFG 379 F ++ L ++A +IA+D+ ++ ++RLV++ Sbjct: 290 HRNESFDAADVRTLTELAMHASIAIDSYRTRTDLTETRDRLVEQAAQSKP---------- 339 Query: 380 EIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCA 439 +IG ++ + + VA +D +VL+LG GTGKE++A+ IH S R N V +NCA Sbjct: 340 -LIGNHHSIQEIRRNATKVAPTDLSVLVLGSNGTGKEVLAQHIHYQSERRNGPFVAVNCA 398 Query: 440 AMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQE 499 A+ LLES+LFGHE+GAFT AS R+G+FELA+ +LFLDEVGDM Q KLLRVL+E Sbjct: 399 ALVETLLESELFGHEKGAFTDASDTRVGKFELANGGTLFLDEVGDMSAGGQAKLLRVLEE 458 Query: 500 QEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDI 559 + R+G ++ I DVR+IAATN+ L+++++ + FR DL++RLNV + LPPL R +D+ Sbjct: 459 KVVVRVGGSRPIPVDVRVIAATNQPLQELISAKRFREDLFFRLNVVSLTLPPLSHRGDDV 518 Query: 560 PLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQL 619 LA+ F R++GR + + A + + +WPGNVREL N +ER LT +V++ Sbjct: 519 MELAEHFLVDFCRQIGRAVPTFAASARDAMLSHDWPGNVRELRNTVERICYLTTTDVVEA 578 Query: 620 SL----PDIVLPEPETPP----AATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLG 671 S P +P + + E + Q I R++ G + AA +LG Sbjct: 579 SDLMMSPSATRASTVSPTMDDVDGNLNSATREFQIQHIERLIASCGGNM---TEAAGKLG 635 Query: 672 LKRTTLLSRMKRLGI 686 L R+ L +M++LG+ Sbjct: 636 LHRSNLYRKMRQLGM 650 >UniRef50_P05407 Nif-specific regulatory protein n=11 Tax=Rhizobiales RepID=NIFA_BRAJA Length = 582 Score = 533 bits (1374), Expect = e-150, Method: Composition-based stats. Identities = 169/562 (30%), Positives = 267/562 (47%), Gaps = 61/562 (10%) Query: 184 RDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYL 243 + I+ + + ++ ++ V + + + + L + T Sbjct: 28 ESALAGIYEISKILNAPGRLEVTLANVLGLLQSFVQMRHGLVSLFNDDG---VPELTVGA 84 Query: 244 DKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPY-ERMLFDTWGNQIQTLCL 302 E+ + + L++ + +R + + Sbjct: 85 GWSEGTDERYRTCVPQKAIHEIVATGRSLMVENVAAETAFSAADREVLGASDSIPVAFIG 144 Query: 303 LPLMSGDTMLGVLKLAQ--CEEKVFTTTNLNLLRQIAERVAIAVDNAL----AYQEIHRL 356 +P+ T++G L + + + LL +A + + ++ Sbjct: 145 VPIRVDSTVVGTLTIDRIPEGSSSLLEYDARLLAMVANVIGQTIKLHRLFAGDREQSLVD 204 Query: 357 KERLVDENLALTEQLNNVDS-EFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGK 415 K+RL + + + IIG S A+ ++L+++ +VA+S+STVL+ GE+GTGK Sbjct: 205 KDRLEKQTVDRGPPARERKQLQAHGIIGDSPALSALLEKIVVVARSNSTVLLRGESGTGK 264 Query: 416 ELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKS 475 EL+A+AIH S R R VK+NCAA+P +LES+LFGHE+GAFTGA + R GRFELADK Sbjct: 265 ELVAKAIHESSVRAKRPFVKLNCAALPETVLESELFGHEKGAFTGAVSARKGRFELADKG 324 Query: 476 SLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFR 535 +LFLDE+G++ Q KLLRVLQEQEFER+GSN I+ DVR+IAATNR+L++ VA EFR Sbjct: 325 TLFLDEIGEISPPFQAKLLRVLQEQEFERVGSNHTIKVDVRVIAATNRNLEEAVARSEFR 384 Query: 536 SDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWP 595 +DLYYR++V P+ LPPLRER DIPLLA+ F K GR++ ++ A + L + ++P Sbjct: 385 ADLYYRISVVPLLLPPLRERRSDIPLLAREFLRKFNSENGRSL-TLEASAIDVLMSCKFP 443 Query: 596 GNVRELENVIERAVLLTRGNVLQLSL---------------------------------- 621 GNVRELEN IER L+ G + S Sbjct: 444 GNVRELENCIERTATLSAGTSIVRSDFACSQGQCLSTTLWKSTSYGKTDPAAPMQPVPAK 503 Query: 622 ----------PDIVLPEPE--TPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQR 669 P + EP P +V+ + + +V ++++ V AA+ Sbjct: 504 SIIPLAETAPPPQAVCEPGSLAPSGTVLVSGARMADRERVVAAMEKSGWV---QAKAARL 560 Query: 670 LGLKRTTLLSRMKRLGIDKSAL 691 LGL + +++ GI+ Sbjct: 561 LGLTPRQVGYALRKYGIEIKRF 582 >UniRef50_Q2IQU1 Transcriptional regulator, NifA subfamily, Fis family n=4 Tax=Anaeromyxobacter RepID=Q2IQU1_ANADE Length = 562 Score = 533 bits (1373), Expect = e-150, Method: Composition-based stats. Identities = 192/513 (37%), Positives = 276/513 (53%), Gaps = 7/513 (1%) Query: 182 RERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTH 241 ++ + RI+ VLS +D+ ++ + + +F ++I S Sbjct: 48 QDDVHRRIVEEAIELVLSTVDLQAVLERTGRLLRRHFGETRVAINRLSAEDPTRAEVVLV 107 Query: 242 YLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLC 301 +Q + AG+ + +++ + E L +G +L Sbjct: 108 SDPRQPSPEVGTSFPLAGSAAGEALAKRLPCVVDPLRPREPRWREEPLLAAYGYG--SLV 165 Query: 302 LLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLV 361 PL+ + +LG L +A + + RQ+A VAIA+ N+L +E+ RL L Sbjct: 166 SFPLVFENELLGTLDIAHPPAEGLLDCCFEVARQVAHLVAIALHNSLMVEEVQRLNRLLG 225 Query: 362 DENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARA 421 EN L E++ + + + SE M +V+++V +VA S +TVL+ GETGTGKE +AR Sbjct: 226 RENALLKEEIRQIKRD-SRYVAESEGMRAVVERVRLVAPSTTTVLVRGETGTGKEGLARM 284 Query: 422 IHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDE 481 +H S R N V N A+P GL+ES+LFGHE+GAFTGA+ +R GRFE AD +LFLDE Sbjct: 285 VHEFSPRFNAPFVAANLGAIPEGLIESELFGHEKGAFTGATRRRAGRFEQADGGTLFLDE 344 Query: 482 VGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYR 541 VGD P +Q +LLRVLQE+ ER+G + ++ DVR+IAATNR+L++MVA FR+DLYYR Sbjct: 345 VGDAPPSVQVRLLRVLQERVVERVGGTEPVKVDVRVIAATNRNLEEMVARGTFRADLYYR 404 Query: 542 LNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVREL 601 L VFPI LPPLRER ED+ L F K A + R + + R L WPGNVREL Sbjct: 405 LAVFPIELPPLRERREDVRPLGTYFLAKQAALMHRRPPRVGEDVWRALEAYGWPGNVREL 464 Query: 602 ENVIERAVLLTRGNVLQ-LSLPDIVLPEPETPPAATVVALEGEDE---YQLIVRVLKETN 657 EN ++RA++L+ G L +LP AA A G + +LI R L+ Sbjct: 465 ENFLQRALILSPGQDLSLPALPTSSALASPAAAAAAEPAPPGRFDDEVRELIERALEHAG 524 Query: 658 GVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSA 690 G V GP GAA LGL+ TTL +MK+ G+ Sbjct: 525 GRVYGPGGAAALLGLRPTTLQGKMKKYGVGTPG 557 Score = 45.2 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 31/198 (15%), Positives = 55/198 (27%), Gaps = 6/198 (3%) Query: 19 RTLLQQPDLASLCEALSQLVKRSALADNAAI-VLWQAQTQRASYYASREKDTPIKYEDET 77 +L DL ++ E +L++R AI L RA + P + Sbjct: 61 ELVLSTVDLQAVLERTGRLLRRHFGETRVAINRLSAEDPTRAEVVLVSDPRQPSPEVGTS 120 Query: 78 VLAHGPVRS-ILSRPDTLHCSYEEFCETWPQLDAGGLYPKFGHYCLMPLAAEGHIFGGCE 136 G L++ E + + +G PL E + G + Sbjct: 121 FPLAGSAAGEALAKRLPCVVDPLRPREPRWREEPLLAAYGYGSLVSFPLVFENELLGTLD 180 Query: 137 FIRYDDRPWSEKEFNRLQTFTQIVSVVTEQIQSRVVNNVDYELLCRER----DNFRILVA 192 + F + +V++ LL RE + R + Sbjct: 181 IAHPPAEGLLDCCFEVARQVAHLVAIALHNSLMVEEVQRLNRLLGRENALLKEEIRQIKR 240 Query: 193 ITNAVLSRLDMDELVSEV 210 + V M +V V Sbjct: 241 DSRYVAESEGMRAVVERV 258 >UniRef50_B5YHK7 SasR n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YHK7_THEYD Length = 462 Score = 533 bits (1373), Expect = e-149, Method: Composition-based stats. Identities = 157/428 (36%), Positives = 233/428 (54%), Gaps = 19/428 (4%) Query: 275 NLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLR 334 N++ L +++ + I T L +G +L L V T + Sbjct: 27 NVYTASSLEEASKIINEILPEIILTDLKLGNQNGIEILNSLPEEPFRPAVIVITAFGTIS 86 Query: 335 QIAERVAIAVDNAL--------AYQEIHRLKER--LVDENLALTEQLNNVDSEFGEIIGR 384 + + L I + +ER L+ ENL L ++L + IIG+ Sbjct: 87 SAVNAIKQGAFDYLTKPLDKEVLLVTIRKAEERMNLIKENLMLRKELYE-KFKMDGIIGK 145 Query: 385 SEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 444 S M VL V+ +++TVLI GE+GTGKELIARAIH S R ++ + +NCAA+P Sbjct: 146 SRKMLQVLDIVKKATPTNATVLIYGESGTGKELIARAIHYNSPRKDKPFIAINCAAIPDT 205 Query: 445 LLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFER 504 L+ES+LFG+E GAFTGA+ ++IG E ADK +LFLDE+ ++PL Q KLLRVLQ++E + Sbjct: 206 LIESELFGYEPGAFTGANTRKIGLIESADKGTLFLDEIAEIPLSTQSKLLRVLQDKEVRK 265 Query: 505 LGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAK 564 +GS + DVR+IAATN++L + V +FR DLYYRL V + +PPLRER EDIP L Sbjct: 266 IGSKDTNKVDVRIIAATNKNLSEQVEKNKFREDLYYRLKVITVEIPPLRERKEDIPDLVH 325 Query: 565 AFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDI 624 F K ++ G+ ++ I + L L N WPGN+RELE+VIERA+++ + + + Sbjct: 326 FFIEKYSKEFGKRVNGIEEKALEALLNYSWPGNIRELESVIERAIIICEKDKITFNDIQD 385 Query: 625 VLPEPETPPAATVVALE-----GEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLS 679 L + + E E +LI + L ++N V+A AA+ LG+ T Sbjct: 386 ELRVITPKNLFDIDIPDEGINYEELEKELIKKALIKSNFVIA---KAARLLGMSYDTFWY 442 Query: 680 RMKRLGID 687 R+K+ G+ Sbjct: 443 RLKKFGLS 450 >UniRef50_D1CFK1 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Bacteria RepID=D1CFK1_THET1 Length = 466 Score = 533 bits (1373), Expect = e-149, Method: Composition-based stats. Identities = 159/453 (35%), Positives = 226/453 (49%), Gaps = 20/453 (4%) Query: 247 HPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLM 306 D+ ++ + E + D + + + I +P + Sbjct: 3 ENNRHILVADDDPSIRTILRDLLEDEGYQVSIALDGEQVIDQVQQSSPDLILMDVRMPKI 62 Query: 307 SGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIA----VDNALAYQEIHRLKERLVD 362 G +L L+ + T + + + + +I R R + Sbjct: 63 DGIEVLKQLRARGMNVPMIVMTAFGNSSTTIKAMQLGAWDYITKPFDLDDITRTINRFFE 122 Query: 363 E-----NLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKEL 417 + + + + IIG S M V K + +VA SD+TVLI GETGTGKEL Sbjct: 123 QQKLSTKVRGRAEEAVAPDKTSRIIGNSPVMQEVYKTIGLVAASDATVLITGETGTGKEL 182 Query: 418 IARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSL 477 +A IH S + +VK+NCAA+P LLES+LFGHE+G+FTGA QR GRFELA K ++ Sbjct: 183 VAETIHYNSTFSQGPLVKVNCAALPETLLESELFGHEKGSFTGADRQRKGRFELAHKGTI 242 Query: 478 FLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSD 537 FLDE+G+M L Q KLLRVLQE+EFER+G + I+ D R+IAATN+ L++ VA +FR D Sbjct: 243 FLDEIGEMTLGTQRKLLRVLQEREFERVGGSSTIKVDTRVIAATNKKLEEEVAAGKFRED 302 Query: 538 LYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGN 597 L+YRLNV IHLPPLRER EDIPLL F K SI E ++ L +WPGN Sbjct: 303 LFYRLNVIHIHLPPLRERKEDIPLLVDYFLQKHRYHKDGPPASISEEAIKVLMEHDWPGN 362 Query: 598 VRELENVIERAVLLTRGNVLQLSLPDIVLPEPET--------PPAATVVALEGEDEYQLI 649 VRELEN IERAV+L +G V+ ++ E ++I Sbjct: 363 VRELENTIERAVILAQGGVITTHHLVFSQIRTGRNIDLSEVIDKTRSLDEAMRIIESKII 422 Query: 650 VRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMK 682 + L++ G A AA+ L + + L +++ Sbjct: 423 LEALEKAKGDHA---LAAEILDISESELKRKLR 452 >UniRef50_A9G6P0 Sigma-54 dependent DNA-binding response regulator n=2 Tax=Myxococcales RepID=A9G6P0_SORC5 Length = 481 Score = 533 bits (1373), Expect = e-149, Method: Composition-based stats. Identities = 172/474 (36%), Positives = 239/474 (50%), Gaps = 39/474 (8%) Query: 253 SEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTML 312 VD+ L + +H +D L + + + T +P + G +L Sbjct: 9 LVVDDEANLRRVLSAQLSRDGYEVHTAEDGEEGLAFLKEHHIDLVITDLRMPKVDGMDLL 68 Query: 313 GVLKLAQCEEKVFTTTNLNLLRQIAERVAIA----VDNALAYQEIHRLKERLVDEN---- 364 V T + E + + E+ + ++ + Sbjct: 69 RAALRDDPSRPVVLLTAHGTVDNAVEALKTGAFDYITKPFDQNEVRVVVKKALRTRDLAS 128 Query: 365 ----LALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIAR 420 ++ S+ IIG S + + +E VA + +TVLI GE+GTGKEL+AR Sbjct: 129 ADATRDVSAAQPRGGSDRFGIIGESPPIQELYAILERVADTPTTVLISGESGTGKELVAR 188 Query: 421 AIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLD 480 A+H SGR +R +K+NCAA+P L+ES+LFG+ERGAFTGA A + GRFELA +LFLD Sbjct: 189 ALHENSGRRDRPFIKVNCAAIPKDLMESELFGYERGAFTGAVASKPGRFELASGGTLFLD 248 Query: 481 EVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYY 540 E+G++P E+Q KLLRVLQE EFER+G K I DVRL+AATNRDLK+ +A FR DL+Y Sbjct: 249 EIGEIPNEMQVKLLRVLQESEFERVGGIKTIHVDVRLVAATNRDLKREIAAGTFREDLFY 308 Query: 541 RLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRE 600 RLNV PI LP LR+R DIP L F K RL ++I+SI E L L++ WPGN+RE Sbjct: 309 RLNVVPIALPALRDRRSDIPHLCAHFVAKFNARLKKSIESIEPEALERLASHAWPGNIRE 368 Query: 601 LENVIERAVLLTRGNVLQLSLPDIVLPEPETPPA------------------------AT 636 LENV+ERA+L G ++L + T Sbjct: 369 LENVVERALLFADGARIRLDDLPEEIRGGATSAPGAALPLAAAAADTSAAPSTPDGLKEQ 428 Query: 637 VVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSA 690 V A + E LI R LK+T+G V AA+ L + R L +MK L + + Sbjct: 429 VKAAMSKLERDLIERALKQTHGNV---THAARLLKISRKGLQLKMKELNLRERD 479 >UniRef50_B3DZ60 DNA-binding response regulator, NtrC family (Contains REC, AAA-type ATPase, and DNA-binding Fis domains) n=4 Tax=Verrucomicrobia RepID=B3DZ60_METI4 Length = 464 Score = 532 bits (1372), Expect = e-149, Method: Composition-based stats. Identities = 169/450 (37%), Positives = 249/450 (55%), Gaps = 24/450 (5%) Query: 256 DEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVL 315 DE T V E + +E DL+ +L + + + L SG +L + Sbjct: 15 DEKRTRMGLVMALGEE--FDTYEASDLSSAMAILENEPIDIVLADIRLGKESGFEILRKV 72 Query: 316 KLAQCEEKVFTTTNLNLLRQIAERVAIAVDNAL-AYQEIHRLK---------ERLVDENL 365 K T + E + + + + ++ +L+ ++ ENL Sbjct: 73 KSLPFPPACLFMTAYGSVENAVEAIKMGAYDYIPKPLDLEKLEITLKRIYQSRKVEVENL 132 Query: 366 ALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNL 425 L QLN +IIG S AM +V ++++ VA S +TVL+ GE+GTGKEL+A AIH L Sbjct: 133 QLKRQLN-WKYGLEKIIGNSAAMKAVFEKIKQVASSKATVLLEGESGTGKELVAHAIHQL 191 Query: 426 SGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDM 485 S R N V ++CAA+ LLES+LFGHE+GAFTGA +RIGRFE A + +LFLDE+G++ Sbjct: 192 SPRKNFPFVVVHCAALSPQLLESELFGHEKGAFTGAIERRIGRFEEAARGTLFLDEIGEI 251 Query: 486 PLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVF 545 L Q KLLR L E+ +R+GSNK++ DVR+IAATN++L+KMV + +FR DL++RLNV Sbjct: 252 DLPTQVKLLRALGEKTIQRVGSNKVVAVDVRVIAATNKNLEKMVEEGKFREDLFFRLNVV 311 Query: 546 PIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVI 605 I +PPLRER EDIPLLA+AF + A G+ ID + E ++ L +WPGNVREL+ I Sbjct: 312 RIVMPPLRERKEDIPLLAQAFLAEFAAENGKKIDRLSPEAMKILLEYDWPGNVRELKMAI 371 Query: 606 ERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVA--------LEGEDEYQLIVRVLKETN 657 E V+L +G ++ + P +A + E E +LI+ L+ Sbjct: 372 EHGVVLCQGEEIRPRDLPERIRIPRPLLSAPISVESSEPDCFNLKEAEKRLILHALRVCQ 431 Query: 658 GVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 G AA++LG+ R TL ++K+ + Sbjct: 432 GK---KTSAAKKLGISRKTLQRKIKQFELT 458 >UniRef50_D2R3W1 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Planctomycetaceae RepID=D2R3W1_9PLAN Length = 611 Score = 532 bits (1372), Expect = e-149, Method: Composition-based stats. Identities = 174/562 (30%), Positives = 269/562 (47%), Gaps = 34/562 (6%) Query: 128 EGHIFGGCEFIRYDDRPWSEKEFNRLQTFTQIVSVVTEQIQSRVVNNVDYELLCRERDNF 187 G EFI + + T T + V + + + + R D Sbjct: 84 CSLKIGSTEFIFLQSASRPSESEQQEHTQTIVRDRVVQGHDTGSIGVTVLRDVERAHDFL 143 Query: 188 RILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQH 247 L ++ +L D D++V E + + L +L Sbjct: 144 -TLHQLSIKLLGCTDPDQVVRESLDLLQQRTRAAVVG-FLWVSDDGQLKPKVVM------ 195 Query: 248 PAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMS 307 P +V + +LTE V + + + I+ + + D +PL+ Sbjct: 196 PEDAAGKVKLSNSLTEMVIRQGKAVWIDSQLHSEGMQTLQHYADA--------ICVPLIH 247 Query: 308 GDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLAL 367 T LG + L E F ++ + +A + +A+ A + RL+D++ Sbjct: 248 EATTLGAIHLY-LEHGRFRQSDFEVAIPLANILTVALVRARRDATLKADHRRLIDKSAV- 305 Query: 368 TEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSG 427 E+IG S+ M + ++ VA++ +VL+ GE+G GKEL+ARA+H S Sbjct: 306 ----------SDELIGDSKPMDDLRSRIARVARATGSVLVRGESGVGKELVARAVHRSSN 355 Query: 428 RNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPL 487 R++R M+ +NCAA+P L+ES LFGH++GAFTGA + +G F+ A +LFLDEVG+M L Sbjct: 356 RSDRPMLSVNCAALPRDLMESQLFGHKKGAFTGADSDHVGWFQQAHTGTLFLDEVGEMTL 415 Query: 488 ELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPI 547 E Q KLLR+L+ F +G K + DVR+IAATNRDL + V + FR DLYYRL+VF + Sbjct: 416 EGQAKLLRILEGHPFLPVGGTKEVSVDVRVIAATNRDLAEFVREGRFREDLYYRLSVFEL 475 Query: 548 HLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIER 607 ++PPLRER DI L F R+ GR ++ + L +WPGNVR+L NVI+ Sbjct: 476 YIPPLRERGSDIRKLIDFFVDHFRRQHGRPSLTLSVDAREKLEGYQWPGNVRQLRNVIDS 535 Query: 608 AVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAA 667 AV++ G+++ LPD + A E +LI LK T+G V AA Sbjct: 536 AVVMCEGSII---LPDDLGLRDVGNAAELESLRMDYWERRLIQEALKRTSGNVP---EAA 589 Query: 668 QRLGLKRTTLLSRMKRLGIDKS 689 + LGL R TL +++ GI++ Sbjct: 590 KLLGLGRATLYRKIEEYGIERK 611 >UniRef50_Q2LRC8 Transcriptional regulator containing sigma 54 interaction domain n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LRC8_SYNAS Length = 697 Score = 532 bits (1372), Expect = e-149, Method: Composition-based stats. Identities = 186/509 (36%), Positives = 280/509 (55%), Gaps = 26/509 (5%) Query: 186 NFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYST----- 240 R+L I L R + + E + ++ + + + + Sbjct: 210 RLRLLGEIFVNALERSRAWKALQESEERLNLATVAAGAGLWILDTNTGQFWVTQMLRKLF 269 Query: 241 HYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTL 300 ++L + + E+ E + V +E++ +L ++DL R+L Sbjct: 270 NFLPGEELSFERYEKTIHPDDRKGV---RELVQRSLKTQNDLTIEYRILKPDGNVCW--- 323 Query: 301 CLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERL 360 +M+ G + + I ER + + EI++LK +L Sbjct: 324 ----IMTRGRPYG-------GATGIPLRLMGICMDITERKEMENELRKQLAEINKLKLQL 372 Query: 361 VDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIAR 420 EN+ L ++ FG IIG S+ + VL +V+ VA +D+TVLILGETG GK ++A Sbjct: 373 EKENIYLRNEIKTER-GFGGIIGHSDTLRYVLFRVQQVAPTDATVLILGETGVGKGMVAH 431 Query: 421 AIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLD 480 AIH +S R ++ MV +NCAA+P+ L+ES+LFG E+GAFTGA A++ GRFE+AD ++FLD Sbjct: 432 AIHEMSARKDKTMVTVNCAALPSNLIESELFGREKGAFTGAYARQAGRFEVADGGTIFLD 491 Query: 481 EVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYY 540 E+G++PLELQ KLLRVLQ+ EFERLGS + ++ DVR+IA+T+RDLK + + FR DLYY Sbjct: 492 EIGELPLELQTKLLRVLQDGEFERLGSPRTVKVDVRVIASTSRDLKVEMHNGRFREDLYY 551 Query: 541 RLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRE 600 RLN FP+ LPPLR R EDIP LA+ F K +R+L + +S+ +T++ L WPGNVRE Sbjct: 552 RLNTFPVTLPPLRMRVEDIPELARHFIDKYSRKLNKQFESLSKDTMQMLQAYAWPGNVRE 611 Query: 601 LENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVV 660 LE+VIER V+ + V Q L + + P + E + I++VL +T + Sbjct: 612 LEHVIERGVITSPEPVFQ--LVEQLEQGPGMEADKPIKGFETMA-REHILQVLHKTGWKI 668 Query: 661 AGPKGAAQRLGLKRTTLLSRMKRLGIDKS 689 G GAA LGL +TL R+K+LGI + Sbjct: 669 EGKGGAAAILGLNPSTLRFRLKKLGIKRP 697 >UniRef50_A8FQ36 Formate hydrogenlyase transcriptional activator, putative n=9 Tax=Shewanella RepID=A8FQ36_SHESH Length = 518 Score = 532 bits (1372), Expect = e-149, Method: Composition-based stats. Identities = 166/516 (32%), Positives = 273/516 (52%), Gaps = 19/516 (3%) Query: 183 ERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHY 242 E + T + S L ++E + I + ID I + + + + + Sbjct: 9 EESMEKFYYKATQCLCSSLQLEESLQSYFDYIKSHLPIDGIYLNIYRPDFSDIQFIA--Q 66 Query: 243 LDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCL 302 ++ Q + + + + E + +I + +L + + +I+++ L Sbjct: 67 VNDQQSSTLDRRIPISNEMCEALQDLDRP-IIRIVNDIELDTVTQFVAPQVIPEIKSVIL 125 Query: 303 LPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVD 362 L ++SG+T LGV+ + VF ++++L + ++ L + + R E L + Sbjct: 126 LRMVSGNTHLGVVGFYAKQAGVFRPRHVDMLEPHMQTFSLITAFNLKGRNLLRANEALAE 185 Query: 363 ENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAI 422 +N +L LN ++G + V++QVE +A+ ++TVL+LGETG GKE+IA AI Sbjct: 186 QNQSLKRTLNIC----NGVVGAHSGLKHVMQQVESIAKLNTTVLMLGETGCGKEVIANAI 241 Query: 423 HNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEV 482 H LS R N+ +K+NC A+P L++S++FG+ERGAFTGA +++ G FE A+ ++FLDE+ Sbjct: 242 HELSLRANKPFIKVNCGAIPESLIDSEMFGYERGAFTGAESRKAGYFEQANGGTIFLDEI 301 Query: 483 GDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRL 542 G++PL +Q +LLRVLQ R+G + +Q D+R+IAAT+R+LK MV+ EFR DL+YRL Sbjct: 302 GELPLSVQVRLLRVLQNSTITRVGGHDSVQLDIRVIAATHRNLKAMVSTGEFREDLWYRL 361 Query: 543 NVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGR-NIDSIPAETLRTLSNMEWPGNVREL 601 +FPI +P LR+R DIPLL + F ++ + + + + E L LS WPGNVREL Sbjct: 362 AIFPIEIPSLRQRRTDIPLLVQHFIEMLSAKFNQDQLPRVAPEQLAILSQYHWPGNVREL 421 Query: 602 ENVIERAVLLTRGNVLQLSLPDIVLPEP-----------ETPPAATVVALEGEDEYQLIV 650 NV+ERA++ L + + A + + I Sbjct: 422 INVLERAIIQHPKGPLNFDFLVPEVKAEHKEKRGETIIVDPSHATDKLVPLETMTRKYIE 481 Query: 651 RVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 L+ T G + GP GAAQ L + T+ S+MK+LGI Sbjct: 482 HALRVTGGKLYGPGGAAQLLDINPNTMRSKMKKLGI 517 >UniRef50_A6C332 Two component, sigma54 specific, transcriptional regulator, Fis family protein n=2 Tax=Bacteria RepID=A6C332_9PLAN Length = 1035 Score = 532 bits (1371), Expect = e-149, Method: Composition-based stats. Identities = 179/570 (31%), Positives = 278/570 (48%), Gaps = 64/570 (11%) Query: 169 SRVVNNVDYELLCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLR 228 R+ +D ++ + L + AV D + + + + +I L Sbjct: 479 DRIQRLIDRRFFRQKYQLDKALKRMNRAVGRLGDQRSIADRMLTSCREVLQVKNAAIYLL 538 Query: 229 SHRKNKLNIYSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERM 288 + + + L H + S V L E + + + +P +++ Sbjct: 539 NPERTQF-----DLLTGFHIENAPSAVPCGPELLEVLEGELAFQRVATGLLKEASPAQQL 593 Query: 289 LFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEK-VFTTTNLNLLRQIAERVAIAVDNA 347 L + I L G + L Q ++ +L L + + +IA+ + Sbjct: 594 LRLLGFDFIYN-----LELDGEFAGFVALGQRTTGSAYSAEDLTFLNAMGQITSIALHST 648 Query: 348 LAYQEIHRLKERLV------DENLAL----------TEQLNNVDSEFGE-----IIGRSE 386 +Q++ RL E + D+ L ++++ + + I G S Sbjct: 649 KIHQDLRRLNEEMRIKVEKIDDQRRLVSVLQSELTNSQEIAERSTPAHDVQRGMIKGNSP 708 Query: 387 AMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLL 446 A+ SV++ V VA S+STVL+ GE+GTGKEL+A+A+H S R+ + +V++NCAA+ LL Sbjct: 709 AIRSVMETVRKVANSESTVLVRGESGTGKELLAQAVHENSSRHEKPLVRVNCAALSPSLL 768 Query: 447 ESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLG 506 ES+LFGH +GAFTGA R+GRFELA+ +LFLDE+GD+ L+ Q KLLRVLQE+ FER+G Sbjct: 769 ESELFGHVKGAFTGAHEDRVGRFELANGGTLFLDEIGDISLDTQVKLLRVLQERAFERVG 828 Query: 507 SNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAF 566 ++ + DVRLI AT+++L++ + + FR DLYYRLNV I LPPLRER EDI LA F Sbjct: 829 GSETLHVDVRLITATHQNLEQRITEGLFREDLYYRLNVISITLPPLRERREDIFELAFYF 888 Query: 567 TFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQL-SLPDIV 625 + A RLG+ I I + + L WPGN+R+LENVIERAV+L V+ + LP + Sbjct: 889 LKRTANRLGKRISHIDPDAIEALERAPWPGNIRQLENVIERAVVLAESEVITMKDLPADL 948 Query: 626 LPEPETPP-----------AATVVALEGED-----------------EYQLIVRVLKETN 657 L + + P T E E + + L E + Sbjct: 949 LEQKKRLPARVFETKNVRSDTTRRIPLSEVEVITFPGSQNHVDQRLTEPEQLKLALAECD 1008 Query: 658 GVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 G AA+ LG+ R+T S++K+ I Sbjct: 1009 G---NKAQAARLLGMPRSTYYSKLKKYDIT 1035 >UniRef50_B8DJ70 Sigma54 specific transcriptional regulator, Fis family n=5 Tax=Desulfovibrio RepID=B8DJ70_DESVM Length = 601 Score = 532 bits (1370), Expect = e-149, Method: Composition-based stats. Identities = 192/574 (33%), Positives = 270/574 (47%), Gaps = 77/574 (13%) Query: 183 ERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKN--------- 233 ++ + + + V ++ L+ + ++ + I Sbjct: 34 QQFDISPFLDMMLNVAQERTVEGLLE-LTHRVNRGTHVMCGCIWFVDAPPPASGTASGPG 92 Query: 234 ------KLNIYSTHYLDK----QHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLA 283 +L + H +H + V + L +V E E Sbjct: 93 EGDPVLRLMTVAGHTTTPVRDWRHTEGTYAMVPLSEPLVGQVALRGEPTWAASPEDWARP 152 Query: 284 PYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLL-----RQIAE 338 + I PL M+GV+ + +L LL + A+ Sbjct: 153 AW------AVDESIHAYAAYPLQFKGNMIGVMAVFYDRPMRGVLADLMLLHRKMHKIFAD 206 Query: 339 RVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMV 398 ++ AV NA +++EI L+ L EN L ++ + I+G S + L+QV+MV Sbjct: 207 SLSAAVVNARSFEEIQHLRRALELENEHLRGEVRRARAP-HSIVGDSPPLRRALEQVDMV 265 Query: 399 AQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAF 458 A +D+TVL+LGE+GTGKEL+A+AIH+ S R +V++NC+A+P L ES+ FGH +GAF Sbjct: 266 APTDATVLLLGESGTGKELVAQAIHDRSQRAAAPLVRVNCSAIPRELFESEFFGHVKGAF 325 Query: 459 TGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLI 518 TGA R+GRF+LAD +LFLDEVG++PLELQ KLLRVLQE FER+G + DVR+I Sbjct: 326 TGALRDRVGRFQLADGGTLFLDEVGEIPLELQGKLLRVLQEGVFERVGEERSRSVDVRII 385 Query: 519 AATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNI 578 AATNRDL+ V FR DL++RL+VFP+ LPPLR R +DIPLLA+ F RRL Sbjct: 386 AATNRDLRADVEHGRFRQDLFFRLSVFPVALPPLRARRDDIPLLARHFVRASCRRLNLPE 445 Query: 579 DSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVV 638 I + L + WPGNVREL+NVIER V++ G L L LP + +P AA + Sbjct: 446 PRIAHRQMAELQSYPWPGNVRELQNVIERGVIMAEGGRLVLDLPPEGGMQAVSPGAAFGM 505 Query: 639 ALEG---------------------------------------------EDEYQLIVRVL 653 E + I R L Sbjct: 506 PGGASPVEGGGAHDAPWGTGETGSAGKTADFGQTGAPDPAGIISEAHWRELQRANIERAL 565 Query: 654 KETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 G V GP GAA+ LGL TTL SRMK LG+ Sbjct: 566 TAAGGRVHGPGGAAELLGLPPTTLQSRMKTLGLR 599 >UniRef50_C9KM56 Sigma-54 dependent transcriptional regulator/sensory box protein n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KM56_9FIRM Length = 560 Score = 531 bits (1369), Expect = e-149, Method: Composition-based stats. Identities = 168/562 (29%), Positives = 274/562 (48%), Gaps = 38/562 (6%) Query: 148 KEFNRLQTFTQIVSVVTEQIQSRVVNNVDYELLCRERDNFRILVAITNAVLSRLDM---- 203 E ++ +++ R ++ ER L+ + +++ D Sbjct: 13 DEGGIHARVAAMIVQRAQELCERYDCHLYIRSERSERCEMHSLMKLVALKVAQGDSVFVS 72 Query: 204 ------DELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQHPAHEQSEVDE 257 + V E+ + + F +++ S + + L ++ V + Sbjct: 73 SEGDNGRQAVIEMVRFLESDFIMNEAS-----EIHGVDKLLHENALMQERLQMILESVQD 127 Query: 258 AGTLTERVFKSKE--MLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVL 315 + +R + + + + + +F+T + + L SG +G + Sbjct: 128 GICVVDRSGEVTYVNPSYLRIVHKTPEMVVGQNVFETAADGNRCAV---LRSGIARIGSI 184 Query: 316 KLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVD---ENLALTEQLN 372 + + + N + +A V EI L ERL + L ++L Sbjct: 185 RHKKDGTTIVANVNPIFVD---GEIAGVVSVIKDITEIQTLMERLSQVSAKAEYLEQELL 241 Query: 373 NVDSE---FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRN 429 F IG+S + VL A S + VLI GE+GTGKE+IA IH SGR Sbjct: 242 RTKKTAQAFANYIGKSGKVVDVLALASKAADSSANVLIRGESGTGKEVIAEGIHYASGRR 301 Query: 430 NRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLEL 489 +++NC A+P LLES+LFGHE+GAFTGA +++G+FELA+ ++FLDE+G++ L Sbjct: 302 RGPFIRVNCGAIPGALLESELFGHEKGAFTGAVRRKLGKFELANHGTIFLDEIGELDKNL 361 Query: 490 QPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHL 549 Q KLLRVLQ++EF+R+G + I DVR+IAATNRDL+ MV + FR DLYYRLNV PI L Sbjct: 362 QVKLLRVLQQKEFDRVGGEETIHVDVRIIAATNRDLEAMVREGTFRDDLYYRLNVIPIIL 421 Query: 550 PPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAV 609 PPLR+RP+DIPLL + F KI++ +++ I + ++ + WPGNVRELENVIER + Sbjct: 422 PPLRDRPDDIPLLVEHFIEKISKENKKDVRGITPDAMQMFMHYRWPGNVRELENVIERVI 481 Query: 610 LLTRGNVLQLS-LPDIVLPEPETPPAATVVALE----GEDEYQLIVRVLKETNGVVAGPK 664 L +++ + LP + + ++ E E Q+I L++ G Sbjct: 482 TLMDTDLITAAMLPSYIKGDIAGREVQSLADDTVLPWEEYEKQIIANALRQ--GTSFN-- 537 Query: 665 GAAQRLGLKRTTLLSRMKRLGI 686 GAA+ L + T+ ++ ++ G+ Sbjct: 538 GAAKLLRISHKTVAAKARKYGL 559 >UniRef50_D2QZ64 Transcriptional regulator, NifA subfamily, Fis Family n=2 Tax=Planctomycetaceae RepID=D2QZ64_9PLAN Length = 677 Score = 531 bits (1369), Expect = e-149, Method: Composition-based stats. Identities = 172/509 (33%), Positives = 254/509 (49%), Gaps = 19/509 (3%) Query: 190 LVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQHPA 249 L + + S+ D+ + + +D + L R N N + L Sbjct: 175 LCRLAFELASQPDLAAVAHLALSGLFESTQVDAGGVWLL-PRGNASNSAADLSLVASRTD 233 Query: 250 HEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGD 309 S + L V + E +L E D ++ P+ Sbjct: 234 RLPSYHRLSAFLAATVLRDGEAVLARNIEGDSQLASR---DSKGEFHTTSVLCAPIRLEK 290 Query: 310 TMLGVLKLAQCEEKVF-TTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALT 368 ++G++ L + +L +A+ VA+AV N QE+ + E L Sbjct: 291 KVVGMIHLYSTDSARVPDPDDLEFTLAVADNVALAVRNLHRQQELAENLLQTRTEVQQLR 350 Query: 369 EQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGR 428 +QL E++G SE + SV +Q+ A S +TVLI GE+G GKEL+ARA+H S R Sbjct: 351 KQLGAES----ELVGSSEVLSSVQRQIARAAPSRATVLIRGESGVGKELVARAVHYSSPR 406 Query: 429 NNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLE 488 V +NCAA+ LLES+LFGHE+GAFTGA+ ++IG+FE A + +L LDE+G+M Sbjct: 407 KRGPFVCLNCAALSESLLESELFGHEKGAFTGATDRKIGKFESAHQGTLMLDEIGEMSPS 466 Query: 489 LQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIH 548 +Q K LRVL+ FER+G ++ I+ DVR+IAATNRDL+K VA+ FR DLY+RLNV I Sbjct: 467 IQAKFLRVLEGHPFERVGGSQPIKVDVRVIAATNRDLEKAVAEGAFRRDLYFRLNVVEIQ 526 Query: 549 LPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERA 608 +PPLR+RPEDI LA F + GR + L WPGNVREL+NVIERA Sbjct: 527 VPPLRKRPEDIIELAHFFLQRFNAETGRKLRGFSPAATERLQQYRWPGNVRELKNVIERA 586 Query: 609 VLLTRGNVLQLSLPDIVLPEPETPPAATVVA-------LEGEDEYQLIVRVLKETNGVVA 661 V+L+RG+V++ + + + E + I+ LK TN Sbjct: 587 VVLSRGDVVEPEDLHLSNLATASESGDNPSPKTSFVPMSLDDIEKRHILATLKATNWH-- 644 Query: 662 GPKGAAQRLGLKRTTLLSRMKRLGIDKSA 690 AA LG++R+TL +++R +++ Sbjct: 645 -KSRAAAILGVERSTLDRKIRRYELNEPG 672 >UniRef50_Q893M0 Putative sigma-54 interacting protein n=1 Tax=Clostridium tetani RepID=Q893M0_CLOTE Length = 595 Score = 531 bits (1368), Expect = e-149, Method: Composition-based stats. Identities = 141/326 (43%), Positives = 201/326 (61%), Gaps = 11/326 (3%) Query: 370 QLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRN 429 +LNN F E+IG+S +M + + +E VA + +++ GE+GTGKEL+ RA+H R Sbjct: 273 KLNNDKIGFKEMIGQSNSMKELYELIEKVADKNVNIMVTGESGTGKELVVRALHYGGERR 332 Query: 430 NRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLEL 489 + VK+NCAAMP +LES+LFGHE+GAFTGA +R+GRFELA K +LFLDE+GDM L + Sbjct: 333 DNPFVKVNCAAMPKDILESELFGHEKGAFTGADKKRVGRFELAHKGTLFLDEIGDMDLSI 392 Query: 490 QPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHL 549 Q K LR++Q+QEFER+G NK I+ DVR+I ATN+DLKK V + FR DLYYRLN +++ Sbjct: 393 QAKFLRIIQQQEFERVGGNKTIKVDVRIICATNKDLKKEVKEGRFREDLYYRLNTITLYV 452 Query: 550 PPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAV 609 PPLRER EDIP L F + ++ + I E L +WPGNVRELEN +ERA+ Sbjct: 453 PPLRERKEDIPFLIHHFLKEKGKKFDKIAPKISPEVFDALMEYDWPGNVRELENAMERAI 512 Query: 610 LLTRGNVLQLSLPDIVL--------PEPETPPAATVVALEGEDEYQLIVRVLKETNGVVA 661 +L ++++L+ I + P E ++I+ L++ + Sbjct: 513 ILCGKDLIRLNNLPISIVKNNKEFDESKHVTPIDIKEITIRNMEREIIIEALEKCDW--- 569 Query: 662 GPKGAAQRLGLKRTTLLSRMKRLGID 687 ++ LG+ R TL ++MK I Sbjct: 570 NRTKTSKSLGISRRTLYNKMKEFNIR 595 >UniRef50_C6E9E0 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Deltaproteobacteria RepID=C6E9E0_GEOSM Length = 467 Score = 530 bits (1366), Expect = e-149, Method: Composition-based stats. Identities = 168/418 (40%), Positives = 238/418 (56%), Gaps = 24/418 (5%) Query: 281 DLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERV 340 D + + + T ++P ++G + LK + + + A + Sbjct: 35 DGQDALQKIELHEVQMVITDIMMPRVNGLEFIKQLKSIRPDIVTIAYSAFANFEMTANLL 94 Query: 341 AIA----VDNALAYQEIHR-----LKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSV 391 ++ +E+ L+ + + ++ + IIG SE M S+ Sbjct: 95 KAGAFFYLEKPFNLEELETHVKRGLEHQALQSKSFRSKPCIKNRALLNNIIGESEKMLSL 154 Query: 392 LKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLF 451 + +E VA SDSTVLI GE+GTGKEL+ARAIH+LS R+++ V +NCAA+P LLES+LF Sbjct: 155 FEMIEKVATSDSTVLIQGESGTGKELVARAIHDLSNRSDKNFVALNCAAIPDELLESELF 214 Query: 452 GHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKII 511 GH +G+FTGA A RIGRFE+ADK +LFLDE+GDM LQ KLLRVLQ +E E +GS + Sbjct: 215 GHVKGSFTGAVASRIGRFEMADKGTLFLDEIGDMKANLQVKLLRVLQSRELEPVGSTRSK 274 Query: 512 QTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIA 571 + DVR+IAATN++L MVA +EFR DLYYRL+V PI LPPLRER D+PLL +F K Sbjct: 275 KVDVRIIAATNQNLDHMVASKEFREDLYYRLSVIPIMLPPLRERGSDVPLLLNSFLEKFN 334 Query: 572 RRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDI------- 624 R R + + + LSN +WPGNVRELEN++ER V++ V+ + Sbjct: 335 RSKQRKVQGFDKQVMEILSNYDWPGNVRELENLVERLVIIKTTGVISIHDLPEKYRGGRT 394 Query: 625 ---VLPEPETPPAAT--VVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTL 677 + EP T P + + E E +LI++ L+++ G K AA+ L LKRTTL Sbjct: 395 TTVLHGEPMTLPDDGFCLNSAVEEFENRLILQALEKSGG---NKKEAAELLNLKRTTL 449 >UniRef50_C0QE85 FhlA n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QE85_DESAH Length = 492 Score = 530 bits (1366), Expect = e-149, Method: Composition-based stats. Identities = 180/496 (36%), Positives = 267/496 (53%), Gaps = 14/496 (2%) Query: 198 LSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQHPAHEQSEVDE 257 +S L ++ + V I + + +++VL +++L + + E Sbjct: 5 ISTLTCEKTMDIVLTAIRELIEYE-LAVVLSCEGRSRLRVLKAAGPAATKILEGYTFSLE 63 Query: 258 AGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKL 317 + + + L + E + + D + + + PL DT+ GVL L Sbjct: 64 DRKDIAAIVQEGKPYLFD--EAEPHVDTYAGVVDFPAD--HSCMVTPLYLDDTLQGVLTL 119 Query: 318 AQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSE 377 FT N+ L+ +++ +++A+ + + + + ++ E L L Sbjct: 120 DHHSCNRFTPQNVRLVGTLSKLISLAIAQSNDKEALEKEHLAILQERNFL---LERNAGA 176 Query: 378 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMN 437 E+IG S + V MVA S + VLI GETGTGKE++ARA+H LS R + +N Sbjct: 177 LSELIGNSVSWNRVKDAAAMVAASQTPVLIQGETGTGKEVVARAVHRLSDRKGGPFIPVN 236 Query: 438 CAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVL 497 C+A+ AG+ ES+LFGHE+G FTGA + R GRFELAD +LFLDE+GD+PLE+QPKLLR L Sbjct: 237 CSAISAGVAESELFGHEKGGFTGAVSSRKGRFELADGGTLFLDEIGDLPLEIQPKLLRAL 296 Query: 498 QEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPE 557 QE++ ER+G I DVR+IAA++ DL V + FR DLYYRLNVFPI LPPLRER Sbjct: 297 QEKKLERIGGESTISVDVRIIAASHVDLYTAVRENRFREDLYYRLNVFPIRLPPLRERGS 356 Query: 558 DIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVL 617 DI +LA+ FT +I R G ++ E++ L +WPGNVR+L+N +ERA +L+RG V+ Sbjct: 357 DILILAEYFTGQIRARAGHKDLALAPESVDILLQADWPGNVRQLQNTLERAAILSRGGVI 416 Query: 618 QLSL------PDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLG 671 + P+ P AT + + +VL T G V G GAA+ L Sbjct: 417 RAEHIVADETPEDSFCLPGADLDATALLRFDVMVKAYLQKVLTRTGGKVYGKGGAAEILD 476 Query: 672 LKRTTLLSRMKRLGID 687 LK TTL S++K+ GI Sbjct: 477 LKPTTLHSKLKKYGIR 492 >UniRef50_A5G9U3 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Deltaproteobacteria RepID=A5G9U3_GEOUR Length = 466 Score = 530 bits (1366), Expect = e-149, Method: Composition-based stats. Identities = 165/419 (39%), Positives = 231/419 (55%), Gaps = 22/419 (5%) Query: 278 ERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIA 337 + D + + + T ++P ++G + LK + E + A Sbjct: 32 QASDGQDALEKIELNDVHMVITDIMMPRVNGLEFIKKLKAMRPEIVTIAYSAFANFEMTA 91 Query: 338 ERVAIA----VDNALAYQEIHRLKERLVDENLALTEQLN-----NVDSEFGEIIGRSEAM 388 + ++ +E+ +R ++ + S IIG S+ M Sbjct: 92 NLLKAGAFFYLEKPFNLEELETHVKRGLEHQALQRQSFKSKPCIKNRSLLNNIIGESDRM 151 Query: 389 YSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLES 448 S+ + +E VA SDSTVLI GE+GTGKEL+ARAIH+LS R + V +NCAA+P LLES Sbjct: 152 LSLFEMIEKVAGSDSTVLIQGESGTGKELVARAIHDLSNRATKNFVPVNCAAIPDDLLES 211 Query: 449 DLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSN 508 +LFGH +G+FTGA A RIGRFE+AD+ +LFLDE+GDM LQ KLLRVLQ +E E +G+ Sbjct: 212 ELFGHVKGSFTGAVATRIGRFEMADRGTLFLDEIGDMKPNLQVKLLRVLQNKELEPVGAA 271 Query: 509 KIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTF 568 + + DVR+IAATN++L+ +VA + FR DLYYRL+V PI LPPLRER DIPLL F Sbjct: 272 RTKKVDVRIIAATNQNLEHLVASKIFREDLYYRLSVIPITLPPLRERKTDIPLLLNNFLE 331 Query: 569 KIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPE 628 K R R + S T+ L N +WPGNVRELEN++ER V+L + Sbjct: 332 KFNRNKQRKVQSFDKNTMDILCNFDWPGNVRELENLVERLVILKGSGTITFQDLPEKYRG 391 Query: 629 PETPPAAT----------VVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTL 677 ++ P + + + + E QLI++ L++T G K AA L LKRTTL Sbjct: 392 IKSAPKSERLTLPDTGFCLNSAVEDFENQLILQALEKTGG---NKKEAATLLNLKRTTL 447 >UniRef50_B8IZ33 Two component, sigma54 specific, transcriptional regulator, Fis family n=15 Tax=Desulfovibrionales RepID=B8IZ33_DESDA Length = 459 Score = 530 bits (1365), Expect = e-149, Method: Composition-based stats. Identities = 158/431 (36%), Positives = 225/431 (52%), Gaps = 21/431 (4%) Query: 275 NLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLR 334 + D L ++ + + T +P ++G +L +K + V T + Sbjct: 30 TVTAISDPETALAFLDESEVDVVVTDMKMPKVTGRQVLERVKKSWPYIPVLIMTAFGSIE 89 Query: 335 QIAERVAIA----VDNALAYQEIHRLKERLVDENL-----ALTEQLNNVDSEFGEIIGRS 385 E + + + E+ V+ L +++ +I+GRS Sbjct: 90 SAVELMKYGAFDYITKPFSNDELLLSIHNAVELARAHRQYRLLQEVMEDRYGVHKIVGRS 149 Query: 386 EAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGL 445 A+ VL VE A S STVLI GE+GTGKELIARAIH S R + V +NC A+ G+ Sbjct: 150 RAIRDVLIMVERAAPSRSTVLITGESGTGKELIARAIHYTSPRKDNPFVSVNCMALNPGV 209 Query: 446 LESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERL 505 LES+LFGHE+G+FTGA A R GRFE AD +LFLDE+ ++ +LQ KLLRVLQE+ FER+ Sbjct: 210 LESELFGHEKGSFTGAVAMRRGRFEQADGGTLFLDEIAELTPDLQVKLLRVLQERRFERV 269 Query: 506 GSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKA 565 G + I+ D+R++AATN+DL MV FR DLYYRLNV I LPPLRER EDIPLL Sbjct: 270 GGGEEIEVDIRVVAATNKDLAAMVEKGTFRDDLYYRLNVVQIPLPPLRERREDIPLLVAH 329 Query: 566 FTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIV 625 F K+ + E L L+ EWPGN+R+LENV+E ++L G V+ + Sbjct: 330 FVDKVCTDNTMPAKTFSTEALNYLTGYEWPGNIRQLENVVESCLVLVPGTVINVDNLPAE 389 Query: 626 LPEPET---------PPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTT 676 + + E+ P + + E LI R L + AA+ LG+ ++ Sbjct: 390 IRDEESQFKSAVDLLPVQLDLADTLEKIEAALIRRALVRAD---LVQVKAAEYLGISKSL 446 Query: 677 LLSRMKRLGID 687 L ++K+ I Sbjct: 447 LQYKLKKYAIT 457 >UniRef50_D0LWE6 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LWE6_HALO1 Length = 684 Score = 530 bits (1365), Expect = e-149, Method: Composition-based stats. Identities = 177/530 (33%), Positives = 270/530 (50%), Gaps = 25/530 (4%) Query: 172 VNNVDYELLCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHR 231 V + ++ L ++ + +D +V + + ++ + Sbjct: 165 VTHRVEHDPASALRLYKALQPLSARLDLSATIDAVVCATFELLPQVTNVAVLMRSEVDKD 224 Query: 232 KNKLNIYSTHYLDKQHPAHEQSE-------VDEAGTLTERVFKSKEMLLINLHERDDLAP 284 + + + T A +S V + ++ RV S+ +I + +++LA Sbjct: 225 RFTVAVSQTRDGSGHGEARGESRGDGRPAEVRASRSVLRRVL-SERAAVITANAQEELAS 283 Query: 285 YERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQC-EEKVFTTTNLNLLRQIAERVAIA 343 E +L G +I ++ +PL GD + G+++ + + +L + + + A+A Sbjct: 284 SESIL----GGKILSMVAVPLWRGDEITGLIQADNRASAGMLSERDLEVALLLGAQAALA 339 Query: 344 VDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDS 403 +DNA + +ERL EN L + + F IIG S AM ++ Q+ V + + Sbjct: 340 IDNAALVSRLKVAEERLRGENTYLKRR--EENLRFENIIGESSAMQAIFDQLRKVVDTRA 397 Query: 404 TVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASA 463 TV I GETGTGKELIA AIH S R ++ V NCAA+P LLES+LFGH++GAFT A Sbjct: 398 TVCIEGETGTGKELIATAIHYESNRRDKMFVAQNCAALPENLLESELFGHKKGAFTSADT 457 Query: 464 QRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNR 523 + G FE+AD +LFLDE+G+MPL LQ K+LRVLQE LGS + Q D R+I ATNR Sbjct: 458 DKKGLFEIADGGTLFLDEIGEMPLSLQAKVLRVLQEGTIRPLGSTRERQVDARIICATNR 517 Query: 524 DLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPA 583 DL V FR DLYYRL VFPI LPPLRER EDIP L + F + +R + + Sbjct: 518 DLAAEVEKGSFRQDLYYRLVVFPIRLPPLRERREDIPPLCEHFLKRYSREFRQEVLGFSQ 577 Query: 584 ETLRTLSNMEWPGNVRELENVIERAVLLTR-GNVLQLSLPDIVLPEPE------TPPAAT 636 E L +S +WPGN+RELEN ++R V+ T G+ +++S L + E P T Sbjct: 578 ECLDVMSTYQWPGNIRELENEVQRLVIQTDAGSWIEVSELSPRLRKVEGTLARIAPKKGT 637 Query: 637 VVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 + A+ + E L+ L+E + AQ LG+ R L ++ + + Sbjct: 638 LKAMMEQVERWLLAEALREHDN---NKTRTAQSLGITREGLHKKLSKYSM 684 >UniRef50_A9ET26 Transcriptional regulator n=2 Tax=Myxococcales RepID=A9ET26_SORC5 Length = 648 Score = 530 bits (1365), Expect = e-148, Method: Composition-based stats. Identities = 161/517 (31%), Positives = 263/517 (50%), Gaps = 40/517 (7%) Query: 188 RILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHR---------------- 231 R L A + +++R +DEL+ + ++ D ++L Sbjct: 132 RKLFAFSEKLINRRSVDELLEAMLDDVIELTHADKGFLLLLEGAEAAADTAVNGGAPAAP 191 Query: 232 ----KNKLNIYSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYER 287 KL + ++ + K+ + ++ +V S ++++ D Sbjct: 192 AAGGDRKLAVRASRNIRKEAITDAAG--GISDSIVRQVIVSGRPVIVSDALADTQFGRS- 248 Query: 288 MLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEK-VFTTTNLNLLRQIAERVAIAVDN 346 ++ ++ PL+S ++G L + + K +F L+LL A + ++ + N Sbjct: 249 --DSVIAMKLSSVMCAPLLSQGQIIGALYVGNDKIKHLFDRAQLDLLSIFASQASLILQN 306 Query: 347 ALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVL 406 A+ + K +LV E FGEIIG +M V ++++ VA +D +VL Sbjct: 307 AMLLNALRADKAKLVAELHDKK---------FGEIIGACPSMLEVFRKLQKVAATDISVL 357 Query: 407 ILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRI 466 I GETGTGKELIAR +H S R+ V +NC A+P L+ES+LFGH +GAFTGA A R Sbjct: 358 ITGETGTGKELIARELHRRSPRDGGPFVTINCGAIPENLIESELFGHVKGAFTGAIASRP 417 Query: 467 GRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLK 526 G+F++ADK +LFLDE+G++PL LQ KLLR LQE+ R+G +K + D+R++AATNR+L+ Sbjct: 418 GKFQIADKGTLFLDEIGELPLNLQVKLLRALQERVVFRVGDSKPEKVDIRIVAATNRNLE 477 Query: 527 KMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETL 586 + + FR DLYYRLNV + LPPLRER +D+ ++AK K A LG + L Sbjct: 478 EEIRAGNFREDLYYRLNVVNLWLPPLRERGDDVLIIAKVLLSKYADELGSAVRGFSPAAL 537 Query: 587 RTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGEDEY 646 + WPGN+R+LEN I++A++L +L + D L + + E + Sbjct: 538 SAIKKYPWPGNIRQLENRIKKALVLCDQALLAVEDLD--LGPGAETAIMPLEKAKEEFQR 595 Query: 647 QLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKR 683 + ++ L+ NG A+ LG+ T+ +++ Sbjct: 596 RYVLEALERNNG---NRTQTARDLGVDPRTIFRYLEK 629 >UniRef50_C0QRG3 Transcriptional regulatory protein ZraR n=2 Tax=Aquificales RepID=C0QRG3_PERMH Length = 442 Score = 529 bits (1364), Expect = e-148, Method: Composition-based stats. Identities = 156/414 (37%), Positives = 227/414 (54%), Gaps = 9/414 (2%) Query: 279 RDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAE 338 + D + I L+P +SG + LK + V T L Sbjct: 32 ESSPVEALNRIKDEHFDLILVDQLMPELSGLEFIDRLKERDIKTPVILMTAYGSLEDAVL 91 Query: 339 RVAIA----VDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFG-EIIGRSEAMYSVLK 393 + + + ++E+ + ++ + E L ++LN + S +II S M VL+ Sbjct: 92 AMKKGAFHYITKPINFEELKIIIDQAL-EVSDLKKELNELKSLLSTDIIAESPQMKQVLE 150 Query: 394 QVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGH 453 + +A D+TVLI GE+GTGKE+IA IH S R R + +NC A+P+ LLES+LFG+ Sbjct: 151 TAKKIAPFDTTVLITGESGTGKEMIANFIHKNSLRKERPFIAINCGAIPSELLESELFGY 210 Query: 454 ERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQT 513 ++GAFTGA+ + G E A+ +LFLDE+G++PL+LQ KLLRVLQE E + +GSN+ + Sbjct: 211 KKGAFTGANTDKKGLIEEAEGGTLFLDEIGELPLDLQVKLLRVLQENEIKPIGSNRPKKI 270 Query: 514 DVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARR 573 DVR IAATNRDLKKMV + +FR DLYYR+NV PIH+PPLRER EDI LA+ F K R Sbjct: 271 DVRFIAATNRDLKKMVEEGKFREDLYYRINVIPIHIPPLRERKEDIIPLAQYFINKFCSR 330 Query: 574 LGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPP 633 G + + L N ++ GNVRELEN+IERAVL T G + + + Sbjct: 331 YGIPKKRLSEKAREKLLNYDYKGNVRELENIIERAVLTTEGEEITDIPVTVSKRYILSQE 390 Query: 634 AATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 + E E + +L++T+ A++ G+ R + +KR GI+ Sbjct: 391 LKPFKEAKKEFEESYLKNLLEKTD---FNISKASKIAGITRAQIYRMIKRYGIE 441 >UniRef50_Q022Z3 Transcriptional regulator, Fis family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q022Z3_SOLUE Length = 705 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 225/533 (42%), Positives = 305/533 (57%), Gaps = 24/533 (4%) Query: 161 SVVTEQIQSRV-VNNVDYELLCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFD 219 S VTE++ V + E C +D R + S D D + A+ + + + Sbjct: 193 SYVTEELDRSVAEGHFGSEGWCMRQDGERFWGNVVTV--SLKDEDGKLQGFARVVRDFSE 250 Query: 220 IDDISIVLRSHRKNKLNIYSTHYLDKQHPAHEQSEVDEAGTL-TERVFKSKEMLLINLHE 278 + LR R +L ST L + E + EA E V ++E LL Sbjct: 251 RRERDEKLRGKRS-RLRTTSTDTLIAGIVSGEFDRIPEANDAFLELVGYTREDLLTGCLR 309 Query: 279 RDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAE 338 DL P E D ++ G + E + + +L A Sbjct: 310 WPDLTPPEYFALDELAHE-----------EGLRFGACAPYEKELIRKGGSRVQVLVATAV 358 Query: 339 RVAIAVDNALAYQEIHRLKERL-VDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEM 397 QE+ RL V E TE++ + +EF EI+GRS AM VL Q+E+ Sbjct: 359 LKLAPFRWISFVQELSAFDRRLPVAETGEFTEEIVVLKNEFVEIVGRSAAMNRVLGQIEL 418 Query: 398 VAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGA 457 VA +++TVLILGETGTGKEL+ARA+H +S R +R V +NCAA+P GLLES+LFG+ERGA Sbjct: 419 VAPTNATVLILGETGTGKELVARAVHQMSPRRDRPFVTLNCAAIPTGLLESELFGYERGA 478 Query: 458 FTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRL 517 FTGA +Q+IGRFE+A++ +LFLDEVGD+PL+LQPKLLR LQE+ FERLG K I DVRL Sbjct: 479 FTGALSQKIGRFEMANRGTLFLDEVGDIPLDLQPKLLRALQEKSFERLGGTKTIPIDVRL 538 Query: 518 IAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRN 577 +AATNR+L +M+ D+ FRSDLYYRL VFPI PLR+ PEDIP+LA+ F K AR +G+ Sbjct: 539 VAATNRNLTQMMGDKLFRSDLYYRLKVFPITTSPLRDHPEDIPILARHFMQKYAREMGKQ 598 Query: 578 IDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATV 637 ID+IP + L+ L WPGNVRELEN IERAV+LT+G+ L+ L +I E P +T+ Sbjct: 599 IDTIPPDALQALVKWPWPGNVRELENFIERAVILTQGSSLRAPLAEIRPDAAELPGDSTL 658 Query: 638 VALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSA 690 E ++++L ET V++ AA RLG+ RTTL + M +LGI + Sbjct: 659 ----EFVERAHLLKILGETGWVIS---KAAARLGMPRTTLNAMMGKLGISRKD 704 >UniRef50_Q39SU6 Two component, sigma54 specific, transcriptional regulator, Fis family n=10 Tax=Bacteria RepID=Q39SU6_GEOMG Length = 461 Score = 529 bits (1362), Expect = e-148, Method: Composition-based stats. Identities = 157/463 (33%), Positives = 235/463 (50%), Gaps = 23/463 (4%) Query: 244 DKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLL 303 + + VD+ +L + + + + R+ D + T + Sbjct: 3 NGEKKTVRVLIVDDDVSLRRVLEYNLQEEGYEVLTAGSGEEGLRLFEDGAPTLVVTDLKM 62 Query: 304 PLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAY---QEIHRLKERL 360 P M G +L +K + V T + E + + + +E +L R Sbjct: 63 PGMGGFQLLREVKERFPDTVVIVITAFGAVEAAVEAMKAGAYDFITKPFNREALKLTVRK 122 Query: 361 VDENLALTEQ------LNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTG 414 + L+ + + EF IIG S M V + ++ VA +D+TVLI GE+GTG Sbjct: 123 ALDMQGLSRENRRLREELSEREEFRSIIGISPPMEEVFRVIDRVADTDATVLITGESGTG 182 Query: 415 KELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADK 474 KEL+ARAIHN S R V +NCAA+P LLES+LFGH +GAFTGA + G+F A+ Sbjct: 183 KELVARAIHNRSSRRAAPFVAINCAAIPRDLLESELFGHVKGAFTGAVQDKEGKFRQAEA 242 Query: 475 SSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREF 534 +LFLDEVG++P+ELQ KLLR LQE+E + +G I+ DVR++AATN DL++ +A+ F Sbjct: 243 GTLFLDEVGELPVELQSKLLRALQEKEVQPVGGAHTIKLDVRVVAATNADLEEAIAEGRF 302 Query: 535 RSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEW 594 R DL+YRL+V P+HLPPLRER EDIPLL + F A + G + E L ++ W Sbjct: 303 REDLFYRLSVIPVHLPPLRERKEDIPLLVRHF----AAKHGGASVTFSPEILAVMAAYGW 358 Query: 595 PGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPA-------ATVVALEGEDEYQ 647 PGNVRELEN +ER +++ + + + +P + E + Sbjct: 359 PGNVRELENTVERILIMRNADTIHPDDLPEKVRRGRSPQRECRVINLPDEGYSLEQLERE 418 Query: 648 LIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSA 690 ++V L+ N AA+ L + R TL+ RM++ I Sbjct: 419 IVVEALERNNW---NQSSAARFLRIPRHTLIYRMEKYSITTPE 458 >UniRef50_A7HIM1 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Myxococcales RepID=A7HIM1_ANADF Length = 495 Score = 529 bits (1362), Expect = e-148, Method: Composition-based stats. Identities = 162/486 (33%), Positives = 257/486 (52%), Gaps = 25/486 (5%) Query: 227 LRSHRKNKLNIYSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYE 286 L + + ++ + + P D+ + E + + L ++ A Sbjct: 6 LPKNESGRASVPAGASVRLSPPMARILIADDHDAVREGMAIALSRLGHDVLAVRGGAEAI 65 Query: 287 RMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIA--- 343 + + T + + G ++ L+ + V + + E + Sbjct: 66 AAYRKKPADVVVTDLRMVPVDGIEVVRRLRELDPDATVLVVSAHGTIAVAVEAMREGAID 125 Query: 344 -VDNALAYQEIHRLKERLVDENLALTE-----------QLNNVDSEFGEIIGRSEAMYSV 391 ++ + + E+ ++ + + ++G SE M V Sbjct: 126 FIEKPFSPDVLRARVEKSIEIARERKGARTARARAEALEEDLGRDRAHGLVGSSEPMRRV 185 Query: 392 LKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLF 451 L QV VA + +TVL+LGE+GTGKEL+ARAIH+ S R + V ++CAA+P GLLES+LF Sbjct: 186 LDQVRKVASTGATVLVLGESGTGKELVARAIHDASPRREQPFVSISCAAIPEGLLESELF 245 Query: 452 GHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKII 511 GHE+GAFTGA +++GRFELA+ +LFLDEVG++P +Q KLLRVLQE++FER+G + + Sbjct: 246 GHEKGAFTGAIRRKLGRFELANGGTLFLDEVGEIPHAVQVKLLRVLQERQFERVGGEETV 305 Query: 512 QTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIA 571 + DVR+++ATNR+L +MV FR DLYYRLNV PI LPPLR+RP D+ LA+ F ++A Sbjct: 306 EVDVRVVSATNRNLAQMVESGRFREDLYYRLNVVPILLPPLRDRPGDVEELARFFVARLA 365 Query: 572 RRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQL-SLPDIVLPEPE 630 R+ R + + E L L WPGNVRELENVIE+A++ G +++ LP+ V P Sbjct: 366 PRMSRAVTGLAPEALELLRRHRWPGNVRELENVIEQALVFAEGELVRPRDLPEGVRKAPP 425 Query: 631 TPP------AATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRL 684 P ++ + + E QLI+ ++ GV A+ LG+K + L ++++ Sbjct: 426 APSLPVPSGDRSLTDILEDLERQLILAAYEKARGV---KAETARLLGIKPSALYYKLEKY 482 Query: 685 GIDKSA 690 GI K+ Sbjct: 483 GIVKAG 488 >UniRef50_C7PLV9 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PLV9_CHIPD Length = 515 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 177/499 (35%), Positives = 281/499 (56%), Gaps = 17/499 (3%) Query: 196 AVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQHPAHEQSEV 255 A+ S + ++L + + + Y + I + ++ + H + + Sbjct: 31 AIGSIRNENDLFAFIHTVLRPYLHTISVLIGIADGN-GTISRWC-------HKTEGLTLL 82 Query: 256 DEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVL 315 ++E + ++ ++ D + + LF + ++ + +LPL + G L Sbjct: 83 PLPQKVSEHFMQDNISGVLEMYAPDRRSALQTTLF---NSGVREMLILPLRNHTNSFGFL 139 Query: 316 KLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENL--ALTEQLNN 373 L F + +++ A ++ A L + L + L +E++ E L Sbjct: 140 CLLAKHHNTFPKSLQISVKRYAGLLSAA---TLKLMLLDALPQWLQEEDMGGDGAELLLY 196 Query: 374 VDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRM 433 D +++ A+ V++QV VA +D+TVL+ GETGTGKEL A AIH S R + Sbjct: 197 NDLLPAKLV-SGIALRPVIQQVRQVAPTDATVLLTGETGTGKELFAEAIHLSSMRRQKAF 255 Query: 434 VKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKL 493 VK+NCAA+P L+ES+LFGHE+GAFTGA +RIG+FE+A+ +LFLDE+G++PL++Q KL Sbjct: 256 VKINCAALPPQLIESELFGHEKGAFTGAIHRRIGKFEMAEGGTLFLDEIGELPLDMQAKL 315 Query: 494 LRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLR 553 LRV+QE+E ER+G + I +VR+IAATNR L++ V FR DLYYRL VFPIHLP LR Sbjct: 316 LRVIQEKEIERIGGTETIPVNVRIIAATNRTLEEEVRQGRFRQDLYYRLYVFPIHLPALR 375 Query: 554 ERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTR 613 ER EDIPLL + F A + G+ I I + ++ L + WPGN+RE+E+++ERAV+ + Sbjct: 376 ERREDIPLLLQHFARNAAMKYGKPIRHIASGSVLALMDYTWPGNIREMEHMVERAVISSD 435 Query: 614 GNVLQLSLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLK 673 + +++P + + + E E Q I+R L+ +NG + GP+GAA L +K Sbjct: 436 EPQITIAVPGNRKALEADGNSLSPLLTLAETERQTIIRALRYSNGRIRGPQGAADLLDIK 495 Query: 674 RTTLLSRMKRLGIDKSALI 692 TTL +RMK+LGI K ++ Sbjct: 496 PTTLEARMKKLGIVKEHVV 514 >UniRef50_Q6MMW8 Acetoacetate metabolism regulatory protein atoC n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MMW8_BDEBA Length = 470 Score = 528 bits (1360), Expect = e-148, Method: Composition-based stats. Identities = 160/448 (35%), Positives = 241/448 (53%), Gaps = 25/448 (5%) Query: 265 VFKSKEMLL-INLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEK 323 + KS + + E + + + +P M+G L +K Sbjct: 23 ILKSTMPEIEFTIEEAATGKEALDKVKQQQWDLVLMDVKMPEMNGLEALTAIKEHDPRTF 82 Query: 324 VFTTTNLNLLRQIAERVAIA----VDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFG 379 V T + L + V+ + Q++ + + E L L + F Sbjct: 83 VVLMTAHSNLHDAVVAIKEGAYDYVEKPVQPQQLAEIVRK-SLEARDLISSLAMSNPVFD 141 Query: 380 -----EIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMV 434 EI+G S M V + + + D+TVL+ GE GTGKEL+ARAIH S R + V Sbjct: 142 DDIESEIVGGSSKMKEVFNLIYRLCKVDTTVLVRGENGTGKELVARAIHFNSPRKSGAFV 201 Query: 435 KMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLL 494 +NC A+P L+ES+LFGHE+GAFTGA ++IG+F+LA+ +LFLDE+G++ ++Q KLL Sbjct: 202 AINCGAIPENLMESELFGHEKGAFTGAVERKIGKFQLANNGTLFLDEIGELRPDMQVKLL 261 Query: 495 RVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRE 554 RVLQE++F +GSN+ ++T R+IAATNR+L+KM+ + EFR DL+YRLNV PI LPPLRE Sbjct: 262 RVLQERKFTPVGSNREVKTTTRIIAATNRNLEKMMEEGEFREDLFYRLNVMPIFLPPLRE 321 Query: 555 RPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRG 614 R +DI LA F K +++ GR I +I E L L + WPGN+RELEN+IER+ ++ Sbjct: 322 RADDIEALAGNFIKKFSKQHGRQITAITPEALDMLKSYRWPGNIRELENIIERSFIVENS 381 Query: 615 NVLQLS-LPDIVLPEPETPPAATVV----------ALEGEDEYQLIVRVLKETNGVVAGP 663 + + + LPD + P+ T A + E E + IV LK NG + Sbjct: 382 HQITVDSLPDSIKLTPKDGADKTASVGYSGPLDFDAFKEEMEKEFIVSALKANNGRI-NQ 440 Query: 664 KGAAQRLGLKRTTLLSRMKRLGIDKSAL 691 A + + + TLL ++++ GI+ Sbjct: 441 TVA--QANIPKNTLLRKIRKYGINVKEY 466 >UniRef50_B8DQY9 Transcriptional regulator, NifA subfamily, Fis Family n=8 Tax=Desulfovibrio RepID=B8DQY9_DESVM Length = 579 Score = 528 bits (1360), Expect = e-148, Method: Composition-based stats. Identities = 165/452 (36%), Positives = 255/452 (56%), Gaps = 10/452 (2%) Query: 186 NFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDK 245 + L AI+ LD+++ + EV + + + +I L +L I ++H L Sbjct: 9 KLKALYAISQVFDRALDLEQALGEVLRVLSETLSMKRATITLPDRETGQLVIAASHGLTP 68 Query: 246 QHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPL 305 + +DE +T +F++ ++ D L +I + +P+ Sbjct: 69 EERGRGVYRLDEG--VTGTIFQTARPYIVRDVRTDPLFLDRTGARKVEKGKI-SFLGVPI 125 Query: 306 MSGDTMLGVLKLAQ-CEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDEN 364 + +GVL + + + V T+ ++ L +A VA + ++++ + L EN Sbjct: 126 LKQGAPIGVLNVDRLFSDDVSTSEDVEFLGIVATLVAQFLS---LNEQLNERVDTLRREN 182 Query: 365 LALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHN 424 + L ++ + ++ I+GRS AM V +Q+E VA + +TVL+LGE+G GK LIAR +HN Sbjct: 183 VKLRTRVLDERGDY--IVGRSAAMLDVQRQIERVAPTRATVLLLGESGVGKTLIARLLHN 240 Query: 425 LSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGD 484 LS R VK+NCA++P LLE++LFGHE+GAFTGA+A R GRFE A + ++FLDE+G+ Sbjct: 241 LSDRMVHPFVKVNCASIPETLLEAELFGHEKGAFTGAAAVRAGRFEEAHRGTIFLDEIGE 300 Query: 485 MPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNV 544 +P +Q KLLRV+Q++EFERLGSN+ + DVR++AATNRDL + FR DLYYRL V Sbjct: 301 LPPGIQAKLLRVIQDREFERLGSNQTHRVDVRIVAATNRDLALLSEQGRFRQDLYYRLCV 360 Query: 545 FPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENV 604 FPI +P LRERP+D+ L F K AR R + ++ + L L EWPGNVRE+EN+ Sbjct: 361 FPIRVPSLRERPDDVERLLNHFLAKAARDY-RRVITLAPDALGLLRRHEWPGNVREMENL 419 Query: 605 IERAVLLTRGNVLQLSLPDIVLPEPETPPAAT 636 IER +L+ + + +L T A Sbjct: 420 IERLAILSESGQIDRRFLEPLLEHSATENAQP 451 Score = 52.1 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 10/70 (14%), Positives = 21/70 (30%), Gaps = 3/70 (4%) Query: 618 QLSLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTL 677 + + E I+ L+ V AA LG+ + Sbjct: 501 TAAHDAHAGHGDADLHGDAHPTTLRDIERNEIIAALRRNGWV---QHRAAAALGITPRQM 557 Query: 678 LSRMKRLGID 687 R++++G+ Sbjct: 558 GYRIRKMGLS 567 >UniRef50_C8R0P5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Deltaproteobacteria RepID=C8R0P5_9DELT Length = 456 Score = 527 bits (1359), Expect = e-148, Method: Composition-based stats. Identities = 155/459 (33%), Positives = 224/459 (48%), Gaps = 20/459 (4%) Query: 247 HPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLM 306 P+ +D+ + + + + D ++L N I T +P Sbjct: 3 QPSDPILVIDDDLRMRQLLRDTLASAGFTAELCADGREAAQLLQSRSFNVILTDLQMPHF 62 Query: 307 SGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNA----------LAYQEIHRL 356 SG +L A + V T + E + + L + Sbjct: 63 SGIEILEQALAANPDSMVVLVTGHGTVESAVEAIKKGAYDYIQKPFEPDELLLTVQRATE 122 Query: 357 KERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKE 416 RL EN L +Q+ E++G S + + + + VA +TVLI GETGTGKE Sbjct: 123 HARLRQENRRLQQQVAGCRG--DELVGESPPLKKLKELIAQVAPFSTTVLINGETGTGKE 180 Query: 417 LIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSS 476 L A+ IH SGR+ + + +NC A+P LLES+LFGH +GAFTGA + G FE D+ + Sbjct: 181 LAAKLIHKWSGRHKQPFLAINCGALPETLLESELFGHVKGAFTGADQDKPGLFETVDQGT 240 Query: 477 LFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRS 536 LFLDE+ M L Q KLLRVLQE F ++G + + DVR+IAA++R L + VA FR Sbjct: 241 LFLDEIDSMTLNFQVKLLRVLQEGTFLKVGGRQPCRADVRVIAASSRPLSEGVAAGSFRR 300 Query: 537 DLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPG 596 DL+YRLNV + LPPLR+R EDIPLLA F K + + + +IPA + L + WPG Sbjct: 301 DLFYRLNVVSLELPPLRQRREDIPLLAHHFLAKYNAKYDKQVQTIPAPVITRLLDHSWPG 360 Query: 597 NVRELENVIERAVLLTRGNVLQLSLPDIVLPEPE-----TPPAATVVALEGEDEYQLIVR 651 NVRELEN +ERA+L G LQ + E T E +LI++ Sbjct: 361 NVRELENAVERALLFCPGQELQAEHLPPLETGGEEAELHTTADDAKSLTMASMEKKLIIK 420 Query: 652 VLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSA 690 L+ NG A+ LG+ +L ++K+ I+ + Sbjct: 421 ALQRANGH---RGKTAELLGISPASLWRKIKKYEINTPS 456 >UniRef50_A5D2K0 Transcriptional regulator n=2 Tax=Clostridia RepID=A5D2K0_PELTS Length = 568 Score = 527 bits (1359), Expect = e-148, Method: Composition-based stats. Identities = 155/523 (29%), Positives = 252/523 (48%), Gaps = 43/523 (8%) Query: 164 TEQIQSRVVNNVDYELLCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDID-- 221 ++ ++ N + + + ++ +L + +S + + ++ Sbjct: 78 VQEKLRQIRGNSTALMEAQAANLMMAILKEKEELLEFKRIQGELSAILNSMQEAIEVADI 137 Query: 222 DISIVLRSHRKNKLNIYSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDD 281 + I + +++ + ++ + V K+ +++ Sbjct: 138 NGVIKYVNPAFSRIT-----GIPEKERIGQNIFEASPDGALATVLKTGKVV--------- 183 Query: 282 LAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVA 341 + + + + P++ M G + + + + + Sbjct: 184 -FGQRTKVGGSNADVVSN--SAPIVVDGKMEGAVCV---------------FQHFTDIMN 225 Query: 342 IAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQS 401 + + + I L ++L Q+ F +IIG S + + E AQS Sbjct: 226 LMEELKKSTTIIENLTDKL--------GQVTTSKYSFDDIIGDSPELRKCITLAEKSAQS 277 Query: 402 DSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGA 461 +STVLILGE+GTGKEL+A AIH S R +K+NCAA+P LLES+ FG+ +GAFTGA Sbjct: 278 NSTVLILGESGTGKELLAHAIHAASMRRENPFIKVNCAAIPDTLLESEFFGYAKGAFTGA 337 Query: 462 SAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAAT 521 +IG+FELA ++FLDE+GDM L LQ KLLRVLQE EFER+G N+ I+ DVR+IAAT Sbjct: 338 VKSKIGKFELAHGGTIFLDEIGDMNLLLQAKLLRVLQEMEFERVGGNQTIKVDVRVIAAT 397 Query: 522 NRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSI 581 NR+L++++ FR DLYYRLNV I +PPLR R ED+P L + R+LG+N+ I Sbjct: 398 NRNLRELIRQGRFREDLYYRLNVVEITMPPLRARKEDLPALVSHLITSLNRKLGKNVKGI 457 Query: 582 PAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQ-LSLPDIVLPEPETPPAATVVAL 640 + L + +WPGNVRELENVIER ++ +L + V + + Sbjct: 458 SKDAEEVLFSYDWPGNVRELENVIERVMVTADEEILTKKNFIQHVNQFRMSSERDVDLMP 517 Query: 641 EGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKR 683 + E LI + + + V G + AAQ L + TL +++K+ Sbjct: 518 IEQMEEMLIRKAISKFGNTVEGKRRAAQALNISLATLYNKLKK 560 >UniRef50_Q1D552 Sigma-54 dependent DNA-binding reponse regulator Nla6 n=8 Tax=Cystobacterineae RepID=Q1D552_MYXXD Length = 484 Score = 527 bits (1358), Expect = e-148, Method: Composition-based stats. Identities = 150/449 (33%), Positives = 229/449 (51%), Gaps = 18/449 (4%) Query: 249 AHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSG 308 + VD+ E + + D R + + + + +P G Sbjct: 3 SARILAVDDERDTCEALADMLSAWGHKVEIAFDGHDALRKANEFRPDVVLSDLAMPETDG 62 Query: 309 DTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQ----------EIHRLKE 358 +L LK + V T + E + + + + K+ Sbjct: 63 LWLLRNLKEELPDCPVVFLTGRGTIDAAVESIREGAYDFIVKPLDTARLKVCIDRALEKK 122 Query: 359 RLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELI 418 + E L +L + S ++I +S M V++ VE VA S ++V I GE+GTGKE++ Sbjct: 123 ETMREVQTLRRRLKQLGSS--DLIAQSVGMRKVIELVEKVAPSKASVSISGESGTGKEVV 180 Query: 419 ARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLF 478 +RA+HNLS R ++ + +NCA++PA L+ES+LFGHERGAFTGA +R G FE+A +LF Sbjct: 181 SRAVHNLSLRRDKPFIAINCASIPATLIESELFGHERGAFTGADQRRPGVFEMAHGGTLF 240 Query: 479 LDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDL 538 LDE+G++P+ELQ KLLRVL+E + RLG I+ DVR++ ATNRDLK+ + + FR DL Sbjct: 241 LDELGEIPIELQAKLLRVLEEGKLRRLGGKVEIEVDVRVLCATNRDLKQEIKNGRFREDL 300 Query: 539 YYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNV 598 Y+RLNVF IHLPPLRER +D+P+L + F K G+ + + E + L N +WPGN+ Sbjct: 301 YFRLNVFQIHLPPLRERRDDVPILVQHFVDKFRGDSGKRVSGVHPEAMEVLKNYDWPGNI 360 Query: 599 RELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAA---TVVALEGEDEYQLIVRVLKE 655 REL N +ERAV+L G ++ + E + I+ L+ Sbjct: 361 RELRNAVERAVILCDGELITREHLPPDMAGKSPERHTFRLPFGLSLDAVEREYILGSLQR 420 Query: 656 TNGVVAGPKGAAQRLGLKRTTLLSRMKRL 684 A+ LG+ TL +++ R Sbjct: 421 NGN---NKARTAEVLGVSEKTLYNKLNRY 446 >UniRef50_B0VES5 Putative uncharacterized protein n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VES5_9BACT Length = 1454 Score = 527 bits (1357), Expect = e-148, Method: Composition-based stats. Identities = 166/535 (31%), Positives = 263/535 (49%), Gaps = 40/535 (7%) Query: 166 QIQSRVVNNVDYELLCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISI 225 Q SR ++ E+ E IT + + D+D L+ + + + D + Sbjct: 949 QKISREYSSQMEEVKFEENL-LNQFYEITQNLNTITDLDVLIEQSLSSLVEIANADGGML 1007 Query: 226 VLRSHRKNKLNIYSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPY 285 +L + + P + + + ++ + + +++ + L Sbjct: 1008 LL--------------HPNPSLPDAWEYRIYHNFSPEDKYHDQFQNICYEVYQNNKLENI 1053 Query: 286 ERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLA-QCEEKVFTTTNLNLLRQIAERVAIAV 344 ++ F N I LPL +GV+ L + K F+ +NLL ++ ++ + + Sbjct: 1054 KQPHFAPSYNNI---LALPLSIRKNTMGVVLLFCKSGSKYFSERIINLLSALSNQIIVII 1110 Query: 345 DNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDST 404 +N L+ L + + EQL++ + + IIG+S M + + +E V + +T Sbjct: 1111 ENILS--------ANLEKSHNIIREQLSSNNI-YSNIIGKSPEMMKIFEIIEKVKDTPTT 1161 Query: 405 VLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQ 464 VL+ G +GTGKELIARA+H S R N+ V C A+P LLES+LFGH +G+FTGA+ Sbjct: 1162 VLLEGPSGTGKELIARALHYSSNRRNKAFVAQYCGALPETLLESELFGHVKGSFTGAAYD 1221 Query: 465 RIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRD 524 + G FE+AD + FLDE+ D+ Q KLLR LQE E +R+G+ K + DVR++ ATN Sbjct: 1222 KKGLFEIADGGTFFLDEISDISQSTQSKLLRFLQEGEIKRVGATKTEKVDVRVVCATNTP 1281 Query: 525 LKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAE 584 L + V EFR DLYYRLNV I +PPL+ R DIPLLA F K +R+ +N+ AE Sbjct: 1282 LMERVKSGEFRLDLYYRLNVIRIDVPPLKNRTGDIPLLAIHFLDKYNKRMNKNVMGFTAE 1341 Query: 585 TLRTLSNMEWPGNVRELENVIERAVLLTRGNV-LQLSLP--------DIVLPEPETPPAA 635 ++ L +WPGNVR+LEN IERAV L N ++ S + Sbjct: 1342 AMKVLEQYDWPGNVRQLENEIERAVTLAEPNTFIKPSDFSEEVYRHIEYSKTIAMLSGKK 1401 Query: 636 TVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSA 690 + E E +LI + L++ AA+ LGL R L+ +M+R + + Sbjct: 1402 NLKDAIEELERKLISQSLEKFQW---NQTQAAKELGLSRQGLIKKMQRYNLYREE 1453 >UniRef50_Q01S08 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01S08_SOLUE Length = 509 Score = 527 bits (1357), Expect = e-148, Method: Composition-based stats. Identities = 168/511 (32%), Positives = 256/511 (50%), Gaps = 21/511 (4%) Query: 184 RDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYL 243 + ++AI+ + S+ D+ EL+ +A+E D D SI L N+L Sbjct: 10 NERLAAILAISQKMNSQRDLSELLDLIAREATSLLDCDRASIFLLDRDTNELWSKVALGS 69 Query: 244 DKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLL 303 D E + + + ++ + + + D + G + + L + Sbjct: 70 D------EILRFEASRGIAGNAARTGDTINVRDAYSDPRF--YTGIDGKTGYRTRNLLAV 121 Query: 304 PLMS-GDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVD 362 + + ++G + VFT + L +A A+A++ A E+ R ++ L Sbjct: 122 AVRNQRGEIIGAFEALNKRVGVFTARDEESLAALASHAAVAIETAQLIGELRRNQDELAQ 181 Query: 363 ENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAI 422 +N L ++ I+G + + V++ VE + S VLI GETGTGKEL A+AI Sbjct: 182 QNAHLWREV-ESRYATHGIVGSGQRIQQVVRLVERIRDSVVNVLITGETGTGKELAAKAI 240 Query: 423 HNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEV 482 H S R + V +NCAA+P LLES+LFG E+G TG R+G+F+ AD +LFLDE+ Sbjct: 241 HYNSPRVRKPFVALNCAALPETLLESELFGIEKGVATG-VNSRVGQFQKADGGTLFLDEI 299 Query: 483 GDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRL 542 GD+ L Q K+LRVLQE+ ER+G I DVRL+AATN+DL+ +A FR DLYYR+ Sbjct: 300 GDLSLTAQAKILRVLQERVLERVGGRAPIAVDVRLLAATNKDLEAEIAKGNFREDLYYRI 359 Query: 543 NVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELE 602 V IH+PPLRE E+IPLLA+ F + R GR + +R L N WPGNVR+L Sbjct: 360 KVIHIHMPPLREIREEIPLLARHFLKEYCRETGREAMEFAPDVMRKLVNSPWPGNVRQLR 419 Query: 603 NVIERAVLLTRGNVLQLSLP-------DIVLPEPETPPAATVVALEGEDEYQLIVRVLKE 655 N + R R ++++ +P E ++ E E ++I L+E Sbjct: 420 NEVTRLAACARLSLIEEEDLWEGIPLVARHVPTAEPVKLQSLKKAVAEMEGRMIAEALQE 479 Query: 656 TNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 T + AA+ LGL R L+++MKR I Sbjct: 480 TRN---NQQQAAKLLGLSRQGLINKMKRYAI 507 >UniRef50_Q1IL93 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Acidobacteria RepID=Q1IL93_ACIBL Length = 484 Score = 526 bits (1355), Expect = e-147, Method: Composition-based stats. Identities = 163/475 (34%), Positives = 243/475 (51%), Gaps = 22/475 (4%) Query: 234 KLNIYSTHYLDKQHPAHEQSEVDEAGTLTERVFKSK-EMLLINLHERDDLAPYERMLFDT 292 ++ + T ++ A + + ++ E+ + D + Sbjct: 3 EIAVSRTSNSARELSAAGVVLIIDDEAAIRESLQTLLELEGYQVDTAVDGGDGLMQMAAH 62 Query: 293 WGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNAL---- 348 + + LP +G +L ++ E V T + + N + Sbjct: 63 PYDLVLLDFALPDRNGIEILKEIRSRDTEISVIMITAYGTVENAVNAMQAGATNFIQKPW 122 Query: 349 AYQEIHR------LKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSD 402 +++ + R+ +ENL L L F IIG+SE M + V +A S Sbjct: 123 DNEKLLADVGAAIARRRVEEENLQLKRALKQ-RYNFENIIGKSEPMLRIFDLVTQIAPSR 181 Query: 403 STVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGAS 462 STVL+ GE+GTGKELIA+AIH S R +R V +N +MP LLES LFGH +GAFT A Sbjct: 182 STVLLQGESGTGKELIAKAIHMNSTRKDRAFVPINTGSMPTDLLESTLFGHVKGAFTSAI 241 Query: 463 AQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATN 522 A + G FE+AD +LFLDE+G M +E Q K+LRVLQ+++F LG + IQ DVR+IAATN Sbjct: 242 ASKKGLFEVADGGTLFLDEIGTMSMETQAKILRVLQDRKFMHLGGVQEIQVDVRIIAATN 301 Query: 523 RDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIP 582 DL+++V + +FR DL+YRLNV I LPPLR+R D+PLL + F K + + + Sbjct: 302 VDLRQLVKEGKFREDLFYRLNVITIDLPPLRQRRLDVPLLCEHFIKKFCEENAKPLMRMT 361 Query: 583 AETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDI-------VLPEPETPPAA 635 E LR L + W GNVRELENVIERAV+L G + + L L ET P A Sbjct: 362 PEALRPLLDYNWQGNVRELENVIERAVVLANGPSITIDLLPDNVVGRGSSLSFVETRPDA 421 Query: 636 TVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSA 690 ++ + + E ++IV +L++ AA++ + +TL ++KRL I+ Sbjct: 422 SLFEIMEDCERRIIVDMLEKVGW---NQTEAAEKFRIPLSTLNQKIKRLSIEIKK 473 >UniRef50_A3ZZQ6 Nitrogen fixation protein anfA (Sigma-54 dependendent transcription regulator) n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZZQ6_9PLAN Length = 612 Score = 525 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 168/562 (29%), Positives = 266/562 (47%), Gaps = 35/562 (6%) Query: 128 EGHIFGGCEF-IRYDDRPWSEKEFNRLQTFTQIVSVVTEQIQSRVVNNVDYELLCRERDN 186 G EF +P + + + IV + Q + + ++ Sbjct: 85 GRLRVGATEFNFNSSSQPPTSYDSDANNMTQTIVRDLPVDPQDTNLVALRELKDYKQAQR 144 Query: 187 FRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQ 246 +L +L D D ++ + + + + KL L +Q Sbjct: 145 LILLYQFAIKLLGSDDPDVIIRTALDLLKDHSKAAVVGFHWLTED-GKLK------LKRQ 197 Query: 247 HPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLM 306 P + + +LT V + + I D + + D +PL+ Sbjct: 198 LPEDVEDAFKLSESLTAMVCQQGHAVWIANEASQDESTRLKHFADA--------ICVPLI 249 Query: 307 SGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLA 366 LG + L + E++ F +L+ +A + IA+ A ++ ERLV ++ A Sbjct: 250 HKKQTLGTIHLYR-EQERFLQNDLDFTISLANILVIALSRAWELTKLQAGYERLVQQSAA 308 Query: 367 LTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS 426 F E+IG S M + +++ +A++ V++ GE+G GKEL+ARA+H S Sbjct: 309 -----------FDELIGESRPMVELKQKIARIAKAGGAVMVRGESGAGKELVARALHKTS 357 Query: 427 GRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMP 486 R++R M+ +NCAA+P L+ES LFGH++GAFTGA +G F+ AD +LFLDEVG+M Sbjct: 358 SRSDRPMLSVNCAALPESLIESQLFGHKKGAFTGADTDHVGFFQQADGGTLFLDEVGEMT 417 Query: 487 LELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFP 546 L+ Q KLLR+L+ F LG+ K + DVRLIAATNRDL + V ++ FR DLYYRL VF Sbjct: 418 LDGQAKLLRILEGHPFLPLGATKEVSVDVRLIAATNRDLAEFVREKRFREDLYYRLCVFE 477 Query: 547 IHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIE 606 +++PPLRER EDI LA F R+ GR + + L N +WPGNVR+L NV++ Sbjct: 478 LYIPPLRERGEDIETLANHFLDHFKRQHGRPELMLSDAAKKKLLNYQWPGNVRQLRNVLD 537 Query: 607 RAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGA 666 AV+L +++ + P + E +LI ++ T G V+ Sbjct: 538 SAVVLADSAMIEPRDLGLRDAGLGEPESLRF----DFWEKKLIEEAMERTGGNVS---ET 590 Query: 667 AQRLGLKRTTLLSRMKRLGIDK 688 + LG+ R TL ++ I + Sbjct: 591 IKLLGVSRATLYRKLDEYNIKR 612 >UniRef50_B5YK20 Response regulator HsfA n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YK20_THEYD Length = 448 Score = 525 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 150/426 (35%), Positives = 222/426 (52%), Gaps = 18/426 (4%) Query: 275 NLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLR 334 ++ D +++ + + T + + G +L K + +V T + Sbjct: 27 DVTGTDSGVEALKLIEKQEFDIVLTDIKMEKVDGFEILRKCKALYPDTEVIMITGYATVE 86 Query: 335 QIAERVAIAVDNALAYQEIHRLKERLVDE----------NLALTEQLNNVDSEFGEIIGR 384 + +A + +++ E L +QL+ + II + Sbjct: 87 NAVTAMKQGAFYYIAKPFKLDIIRKIILEASEKVKLKKEVKQLRQQLDFHEKV--NIITQ 144 Query: 385 SEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 444 + M +L+ +A +D VLI GE+GTGKEL AR IH S R + +NC A Sbjct: 145 NSKMLKLLEIARQIAPTDCNVLITGESGTGKELFARYIHLNSLRKKGPFLAVNCGAFSEE 204 Query: 445 LLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFER 504 LL ++LFGHE+GAFTGA+A + G E+A SLFLDE+ +M L +Q KLLRV+QE+EF R Sbjct: 205 LLSNELFGHEKGAFTGANALKKGLIEMASSGSLFLDEITEMSLTMQAKLLRVIQEREFFR 264 Query: 505 LGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAK 564 LG+ + I+ DVR IAATNRD+K+ V + +FR DLYYRLNV I +PPLRER +DIPLL Sbjct: 265 LGATEPIKVDVRFIAATNRDIKEEVKNGKFREDLYYRLNVVNIEIPPLRERKDDIPLLVA 324 Query: 565 AFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDI 624 F+ K + + + I + E + L N E+PGNVRELEN+IERAV+L + + + Sbjct: 325 YFSKKYSLLMKKEITGVSEEAINLLVNYEYPGNVRELENIIERAVVLCNSSQIDVEHLPQ 384 Query: 625 VLPEPET---PPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRM 681 L E + E E + I +L+E AAQ LG+ R +L ++ Sbjct: 385 DLKELKIEVFTKKEGKFMSLEELEKEYIKWILREVGN---NKTVAAQILGIDRVSLWRKL 441 Query: 682 KRLGID 687 K GI+ Sbjct: 442 KNYGIE 447 >UniRef50_A1ATK4 Two component, sigma54 specific, transcriptional regulator, Fis family n=12 Tax=Deltaproteobacteria RepID=A1ATK4_PELPD Length = 480 Score = 525 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 166/473 (35%), Positives = 240/473 (50%), Gaps = 41/473 (8%) Query: 253 SEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTML 312 D+ ++ + K+ + + DD ++ + + +P MSG +L Sbjct: 7 LVADDEESMRWVLSKALKRKGFTVDLADDGRQALALIQENSYDLAILDIKMPGMSGLDLL 66 Query: 313 GVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNAL----------AYQEIHRLKERLVD 362 ++ + + V T ++ E + + + A E + Sbjct: 67 DRIREMKSDLLVVIMTAEASMKNAVEAMKRGAYDYITKPFDLDVIDAIVEKVGRAREIAG 126 Query: 363 ENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAI 422 + L ++L IIG S AM S+ K + VA SD T+LI GE+GTGKE++ARAI Sbjct: 127 QVSLLKQELKEHYQVEKNIIGNSAAMQSIYKTIGKVADSDITILIQGESGTGKEMVARAI 186 Query: 423 HNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEV 482 H SGR + V +NCAA+P LLES+LFG ERGAFTGAS ++ G+FE A++ ++FLDE+ Sbjct: 187 HFNSGRLGKPFVAINCAAIPRDLLESELFGSERGAFTGASERKQGKFEQANQGTIFLDEI 246 Query: 483 GDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRL 542 GDMPL+LQ K+LRVLQE E R+G + I +VR++AATN++L++ V REFR DLYYRL Sbjct: 247 GDMPLDLQAKILRVLQEHEVTRVGGTQSIAVNVRIVAATNQELQERVRQREFREDLYYRL 306 Query: 543 NVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELE 602 NV PI L PLRER +DIP L + F + L + E + LS WPGNVRELE Sbjct: 307 NVVPITLAPLRERRDDIPELVRYFLDRTCTELSIPPKQLTPEAMALLSRHSWPGNVRELE 366 Query: 603 NVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEG-------------------- 642 N I+RAV+L+ +L + D + PE E A Sbjct: 367 NTIKRAVILSNDPMLTEADFDGLQPEGEETAMTPQDASLEAIVEAKLRSCLTGIEKLDKS 426 Query: 643 --------EDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 + E LI +L++T AA LG+ R TL ++ L I+ Sbjct: 427 DIHAKVLQQVERPLIRFILEKTRW---NQVKAADILGINRNTLRKKIHDLEIE 476 >UniRef50_A9GA77 Protein kinase n=15 Tax=Bacteria RepID=A9GA77_SORC5 Length = 1739 Score = 525 bits (1353), Expect = e-147, Method: Composition-based stats. Identities = 168/550 (30%), Positives = 263/550 (47%), Gaps = 33/550 (6%) Query: 161 SVVTEQIQSRVVNNVDYELLCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDI 220 + ++ L+A+ + S +++ ++++ Sbjct: 1172 RRAAQPARTPAAAEAAAPPAAERTAKLERLLAVFRRLNSSVEIADILAMAMDAAIDLTAA 1231 Query: 221 DDISIVLRSHRKNKLNIYSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERD 280 + + L +L + +D++ + + ER ++E ++ + D Sbjct: 1232 ERGFL-LIEQPGGELRVAVARNVDREKVGRSHLKFSYG--IAERAIATQEPVVTVDAQED 1288 Query: 281 DLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLA-QCEEKVFTTTNLNLLRQIAER 339 + +++++ +P+ S D +LG L L + F +++LL A++ Sbjct: 1289 PRFHEHASVHAM---RLRSVIAVPIRSPDGVLGALYLDNRFRRARFAPEDVDLLLAFADQ 1345 Query: 340 VAIAVDNALAYQEIHRLKERLVDENLAL--------------------TEQLNNVDSEFG 379 VA+A+ NA ++ R L E + +Q ++G Sbjct: 1346 VALALRNARLVDDLRRRTVELEAERRRVEELLRGQAAEIDRLQEQVLVRQQALEHRYDYG 1405 Query: 380 EIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCA 439 I+GR A+ +V ++ V + VL+ GE+GTGKEL+ARAIH R + + +NCA Sbjct: 1406 AIVGRGPALRAVFATLDRVVDAPVNVLVTGESGTGKELVARAIHFAGPRKSGPFMGINCA 1465 Query: 440 AMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQE 499 A+PA LLES+LFGH RGAFTGA R G A +LFLDE+G+MPLE+Q KLLRVLQE Sbjct: 1466 ALPAALLESELFGHVRGAFTGADRDRTGLVVAARGGTLFLDELGEMPLEVQAKLLRVLQE 1525 Query: 500 QEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDI 559 +E +GS + ++ D RL+ ATNRDL A FR DLYYR+ V I LP LR+R ED+ Sbjct: 1526 REVRPVGSAEAVRVDFRLVCATNRDLLAEAARGRFREDLYYRVAVVQIRLPALRDRLEDL 1585 Query: 560 PLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQL 619 P LA F + A +LGR + E LR L WPGNVRELENVI +AV+L G + Sbjct: 1586 PELALHFVRRAAEQLGRPAPQLSHEALRRLGQHGWPGNVRELENVITKAVVLCDGRRIGP 1645 Query: 620 SLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLS 679 D+ + A DE ++ L+ T AA+ G+ R T Sbjct: 1646 DDVDLPRAQEGGGRGAPRPP---RDERAALLAALERTGW---NALQAAREAGMSRATFYR 1699 Query: 680 RMKRLGIDKS 689 +++RLGI++ Sbjct: 1700 KLRRLGIERP 1709 >UniRef50_Q1Q0T6 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q0T6_9BACT Length = 472 Score = 525 bits (1353), Expect = e-147, Method: Composition-based stats. Identities = 154/454 (33%), Positives = 234/454 (51%), Gaps = 31/454 (6%) Query: 259 GTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLA 318 + +F+ EM + + + R L + + T +P + + +K Sbjct: 24 RRVLTMIFE--EMKDVKVVAGNSFEDVLRYLDKERFHLLITDLKVPGSNSIDFIRAVKNK 81 Query: 319 QCEEKVFTTTNLNLLRQIAERVAIAVDNAL----AYQEIHRLKER------LVDENLALT 368 + + T + + + V + L + +R L EN L Sbjct: 82 VADIPIIVLTAYGSVGFAIDIMKEGVFDYLVAPFDNDILELAVKRALKVSSLTIENKNLR 141 Query: 369 EQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGR 428 + L + FG IIG S ++ L+ V V ++DSTVL+ GE+GTGKEL++RAIH S R Sbjct: 142 KAL-ELQYNFGNIIGNSPSVVETLRLVGEVTRTDSTVLVTGESGTGKELVSRAIHYNSDR 200 Query: 429 NNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLE 488 V +NCAA+P LLES+LFG+E+GAFTGA + GRFELA + FLDE+ +M Sbjct: 201 KCGPFVALNCAAIPENLLESELFGYEKGAFTGAEKTKKGRFELAAGGTFFLDEISEMSAA 260 Query: 489 LQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIH 548 +Q K+LR+++ +E ERLG I+ DVR+I ATNRDL +MV + +FR DLYYR++VFPI Sbjct: 261 VQAKVLRIIESKELERLGGTDTIKVDVRIICATNRDLVQMVKEGKFRDDLYYRISVFPIM 320 Query: 549 LPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERA 608 LP LRER DI L+K F + ++G+ + +E + L +W GN+REL+N+IERA Sbjct: 321 LPALRERSGDIIPLSKHFVNHFSAKMGKTPIVLSSEVEKILIKHKWEGNIRELQNIIERA 380 Query: 609 VLLTRGNVLQLSLPDIVLPEPETPPA---------------ATVVALEGEDEYQLIVRVL 653 V+L + V++ + TPP + E QL+ + L Sbjct: 381 VILCKNGVIRTEHLPTSIVHGYTPPELNENISQNNSVNFDIPPNGLSLDDLEKQLVAKAL 440 Query: 654 KETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 + + + AA+ LGL R T R+++ GI Sbjct: 441 ERSKNNI---TKAAKLLGLTRGTFRYRLQKYGIS 471 >UniRef50_Q2IEG0 Transcriptional regulator, Fis family / DNA-binding protein Fis n=1 Tax=Anaeromyxobacter dehalogenans 2CP-C RepID=Q2IEG0_ANADE Length = 520 Score = 524 bits (1351), Expect = e-147, Method: Composition-based stats. Identities = 178/506 (35%), Positives = 280/506 (55%), Gaps = 8/506 (1%) Query: 188 RILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQH 247 + +T + S LD+ + + V + +D++ + + + + + Q Sbjct: 5 QFFRELTLRICSTLDIQKAIERVFPVLRARVPLDELRLEVLDRKLGAVRQIARVSTAGQG 64 Query: 248 PAHEQS--EVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPL 305 A E+ L R+++ + + + + RM+ + + +PL Sbjct: 65 RAGERITQVKPAIIPLPARLWRWADAMRGPILMDEASGEDMRMMRVLTKAEHDSDLAVPL 124 Query: 306 MSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENL 365 T LG L L + +T + LL +A+ A+A+ NALA+QE+ ++++ L+D+ Sbjct: 125 RVESTQLGFLLLRAAGKGRYTAAHAELLATVADPCAVALANALAHQELVQVRDELLDDKR 184 Query: 366 ALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNL 425 L +L + + E+IG S + SV++ V A +STVL+LGETG GK++IA +H+ Sbjct: 185 FLNRELFHATA--DEVIGGSTGLRSVMELVRQAAPLNSTVLLLGETGVGKDVIANVLHDA 242 Query: 426 SGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDM 485 S R +K+NC A+P GL++S++FGHE GAFTGA A GRFE AD ++FLDE+GD+ Sbjct: 243 SPRREGPFIKVNCGAIPEGLVDSEMFGHEAGAFTGARAAHRGRFERADGGTIFLDEIGDL 302 Query: 486 PLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVF 545 P Q +LLRVLQ +E ER+G + ++ D+R+IAAT+++L++MV + FR DL++RLNV Sbjct: 303 PKGAQVRLLRVLQSREIERVGGTRPLKVDIRVIAATHQNLQQMVTEGRFREDLFFRLNVL 362 Query: 546 PIHLPPLRERPEDIPLLAKAFTFKIARRLG-RNIDSIPAETLRTLSNMEWPGNVRELENV 604 PI++PPLR R EDIP L + F R LG R +I L L WPGNVRELENV Sbjct: 363 PINIPPLRLRAEDIPALVRHFVAVKRRGLGIRGTPTISPGALARLQAYAWPGNVRELENV 422 Query: 605 IERAVLLTRGNVLQLSLPDIVLPEPETPPA---ATVVALEGEDEYQLIVRVLKETNGVVA 661 +ER ++ + G +LS ++ + + P+ A + I VL T G + Sbjct: 423 VERELVRSAGRGRELSFEELARSQARSAPSRHEAPPPRTLADVMAAHIEDVLAATGGKIH 482 Query: 662 GPKGAAQRLGLKRTTLLSRMKRLGID 687 GP GAA+ LG+ +TL +RM RLGI Sbjct: 483 GPGGAAELLGVNESTLRNRMNRLGIT 508 >UniRef50_C0GUF2 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GUF2_9DELT Length = 554 Score = 524 bits (1351), Expect = e-147, Method: Composition-based stats. Identities = 170/514 (33%), Positives = 268/514 (52%), Gaps = 12/514 (2%) Query: 185 DNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLD 244 D T + LD+ + + + I Y D ++I L D Sbjct: 43 DQNIFFREATMRICGSLDLQKAMQNTLEFISSYIPADALNIGLIDPEPGVARSVVHISPD 102 Query: 245 KQHPAHEQSEVDEA-GTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLL 303 + + + + R ++SK I + + ++ W + +L Sbjct: 103 DWPESRSTVSMPQNIVSKFTREWESKPGFRILNDISLEEPAVQELIRAFWPEDV-SLLRT 161 Query: 304 PLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDE 363 L +G+L L + +T + ++ + + ++A+ NAL Y+E +LK L D Sbjct: 162 DLALESRRMGLLLLVAEGKNRYTKEHARIMSSLNKPFSVALANALQYEEAIQLKNMLEDY 221 Query: 364 NLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIH 423 N L +L+ + ++ I+G + V++ V VA +S VL+ GETGTGKE+ A A+H Sbjct: 222 NRDLRSELSGLSAD-NRIVGAEFGLRQVMRMVRQVAPLESPVLLQGETGTGKEIFANALH 280 Query: 424 NLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVG 483 S R++ +K+NC +P L++S+LFGHE+GAFTGA ++ GRFE ADK ++FLDE+G Sbjct: 281 AASLRSDGPFIKVNCGGLPESLVDSELFGHEKGAFTGAISRNRGRFERADKGTIFLDEIG 340 Query: 484 DMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLN 543 ++PL +Q KLLRVLQ+ E ER+G ++ I DVR+I+AT+R+L++MV EFR DL++RLN Sbjct: 341 ELPLNIQAKLLRVLQQNEIERVGGSRTIPVDVRIISATHRNLEQMVQRGEFREDLWFRLN 400 Query: 544 VFPIHLPPLRERPEDIPLLAKAFTFKIARRLG-RNIDSIPAETLRTLSNMEWPGNVRELE 602 VFPI +PPLR+RP+D+P L + R + IP+ T+ L WPGNVREL+ Sbjct: 401 VFPIMIPPLRQRPQDLPALLDHLVSRKCREMKITREIRIPSGTMDRLKKRAWPGNVRELQ 460 Query: 603 NVIERAVLLT-----RGNVLQLSLP---DIVLPEPETPPAATVVALEGEDEYQLIVRVLK 654 N++ER ++ VL L L + T V E + I + L+ Sbjct: 461 NLVERTLIQAHADNPDSAVLNLDLAVSGQKSIETNLETSGNTQVLTFEEAAARHIKKALE 520 Query: 655 ETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDK 688 G + GP GAA+ LGL +TL +M++L I Sbjct: 521 VARGKITGPGGAAEILGLNPSTLRGKMRKLNISP 554 >UniRef50_C0QMI0 Sigma-54 dependent two component transcriptional regulator n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QMI0_DESAH Length = 524 Score = 524 bits (1351), Expect = e-147, Method: Composition-based stats. Identities = 168/513 (32%), Positives = 270/513 (52%), Gaps = 16/513 (3%) Query: 185 DNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLD 244 D +T + L++D+ + E I + D + V+ + + L Sbjct: 3 DENVFFKNVTRLICGDLEIDKALKECLDYIRAFIPADAMGFVIYLPEQKMFETIARADLA 62 Query: 245 KQHPAHEQSEVDEAGTLTERVFKS--KEMLLINLHERDDLAPYERMLFDTWGNQIQTLCL 302 A +S A T + K+ + H D + + + + Sbjct: 63 G---ADTRSVKFPADTFYQNRMKTDFSAPRITVAHPGDPEDYTLKFIRQAGWMDGLSAIM 119 Query: 303 LPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVD 362 + ++ +G L + ++ + ++ L+ + E IA+ N L Y+++ LK RL+D Sbjct: 120 IEMVLTGKRMGALPMISKKQIRYEKKHIRLISLLNEPFGIALTNCLRYRKVKELKNRLLD 179 Query: 363 ENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAI 422 + L ++L EI+G + V++ V VA +S VL+LGETG GKE+IA+AI Sbjct: 180 DKRYLEKEL--FHVNIQEIVGSDGGLKGVMESVAQVAALNSPVLLLGETGVGKEVIAKAI 237 Query: 423 HNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEV 482 H SGR + +K+NC A+P L++S+LFGHE+GAFTGA ++++GRFE A ++FLDE+ Sbjct: 238 HMASGRRSGPFIKVNCGAIPESLIDSELFGHEKGAFTGALSRKLGRFERAHLGTIFLDEI 297 Query: 483 GDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRL 542 G++PL+ Q +LLRVL++ E ER+G ++ + D R++AATNRDL M+ +R+FR DLY+RL Sbjct: 298 GELPLDAQTRLLRVLEDMEIERVGGDETVSIDSRVLAATNRDLDAMIKNRQFREDLYFRL 357 Query: 543 NVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRN-IDSIPAETLRTLSNMEWPGNVREL 601 VFPI +PPLR+R DIP L F K A+ + I ++ +L L +WPGN+REL Sbjct: 358 KVFPIEIPPLRDRKTDIPALVHYFMHKKAKEIAFPGIPALALNSLPILMAYDWPGNIREL 417 Query: 602 ENVIERAVLLTRGNVLQLSLPD--------IVLPEPETPPAATVVALEGEDEYQLIVRVL 653 EN +ERA++ RG L ++ P+ A ++ I + L Sbjct: 418 ENAVERALITCRGMPLSFDDLATAIGPKKGMIAPKDTDVEATDGLSTLNAAAASHIRKAL 477 Query: 654 KETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 ++ G V GP GAA L + TL +M+RLG+ Sbjct: 478 QKCRGRVEGPHGAAVLLDVHPATLRQKMRRLGV 510 >UniRef50_B9M610 Two component, sigma54 specific, transcriptional regulator, Fis family n=14 Tax=Deltaproteobacteria RepID=B9M610_GEOSF Length = 465 Score = 524 bits (1351), Expect = e-147, Method: Composition-based stats. Identities = 163/465 (35%), Positives = 230/465 (49%), Gaps = 34/465 (7%) Query: 244 DKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLL 303 D++ ++ E+ L F S +MLL L + + + + Sbjct: 16 DEEGILKYMKKLLESQGLVVETFTSGKMLLARLQQGPNADLLLQ------------DVKM 63 Query: 304 PLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNA----------LAYQEI 353 P M G +L +K + V T + E + + + L E Sbjct: 64 PDMDGLQILQEVKKLRPGLPVVIMTAFGTIDAAVEAMKLGAYDYVTKPFPKEKILGVLEN 123 Query: 354 HRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGT 413 +E L EN L E+L V I+ S+ V + VA S++ +LILGE+GT Sbjct: 124 VLERELLRKENQQLKEELGKVTLT-DAIVFASDRFREVYELTLEVAASEANILILGESGT 182 Query: 414 GKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELAD 473 GKELIA AIH S R RR++ +NCAA+ LLES LFGH RGAFTGA+ + G E AD Sbjct: 183 GKELIAGAIHRHSKRRGRRILSINCAALSDTLLESQLFGHVRGAFTGATTNQKGLLEEAD 242 Query: 474 KSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADRE 533 +LF+DE+GDM L LQ KLLRV+QE +F +G+ + + D+R +AATN++L+K VA+ Sbjct: 243 SGTLFMDEIGDMSLMLQAKLLRVIQEGDFIPVGATRAKKVDIRFVAATNKNLEKEVAEGR 302 Query: 534 FRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNME 593 FR DLYYRLNV I LPPLRER EDI LA+ F K +R+ + +D E L + Sbjct: 303 FREDLYYRLNVISIPLPPLRERKEDIEPLARHFLRKYNQRMNKEVDRFTREALDLMLGYS 362 Query: 594 WPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVAL--------EGEDE 645 WPGN+RELENV+ERAV+L R V+ + + A + E Sbjct: 363 WPGNIRELENVVERAVILARSGVVTTDHLPMWKKNVASTAATGPASALSSHQLVSLENVE 422 Query: 646 YQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSA 690 + I + L T A+ LG+ R TL ++ G+ Sbjct: 423 REHIRQTLARTG---FHKSRTAEILGISRKTLDRKIAEFGLKPEG 464 >UniRef50_C7PBZ0 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Sphingobacteriales RepID=C7PBZ0_CHIPD Length = 481 Score = 524 bits (1350), Expect = e-147, Method: Composition-based stats. Identities = 177/474 (37%), Positives = 251/474 (52%), Gaps = 18/474 (3%) Query: 232 KNKLNIYSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFD 291 +++L + L + ++ S V + + + L+ L L Sbjct: 9 EDELIVAGDIRLTLERAGYKVSGVARSVHRALEIIDVERPDLVLLDIYLKGDQTGIDLAV 68 Query: 292 TWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAER------------ 339 L +L K+ Q F + Sbjct: 69 ELNKHNIPFVYLSANCNRQVLEAAKVTQPYG--FIVKPFREKDLLVTLDIARYRYEHHRV 126 Query: 340 --VAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEM 397 V + + + L + + +++ F IIG S M V + + Sbjct: 127 LKVKPGIVSQSDDLRLPALPVQ-QAPVPEVKKEVVPPIPNFEGIIGSSIPMQRVFELIRQ 185 Query: 398 VAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGA 457 VA D++VL+LGETGTGKE +A IH+LS R + VK+NCAA+P L+ES+LFGHE+GA Sbjct: 186 VAPLDTSVLVLGETGTGKEGVANCIHHLSPRKAKPFVKVNCAALPTHLIESELFGHEKGA 245 Query: 458 FTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRL 517 FTGA +RIG+FE AD ++FLDE+GDMP +LQ KLLRVLQE+E ER+G N I+ +VR+ Sbjct: 246 FTGALEKRIGKFERADGGTIFLDEIGDMPADLQVKLLRVLQEKEIERIGGNGPIKVNVRI 305 Query: 518 IAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRN 577 IAATNR+L+K +A+ FR DLYYRL+VFPI L LRER +DIPLL F A G+ Sbjct: 306 IAATNRNLEKEIAEGRFRLDLYYRLHVFPIMLSALRERRDDIPLLIAHFIRLYASATGKG 365 Query: 578 IDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVL-QLSLPDIVLPEPETPPAAT 636 + I LR L + WPGNVREL+N+IER+VLL+R +++ ++ LP V E T Sbjct: 366 VSDIAPAALRQLMDYAWPGNVRELQNLIERSVLLSRESIIREVILPVSVKKETTVVSTET 425 Query: 637 VVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSA 690 + E E + I+ VLK+ N ++GP GAA+ L L +TL S+MK+LGI K Sbjct: 426 DIKTIVELEREHILTVLKKCNHKISGPGGAAELLNLPPSTLASKMKKLGIVKRH 479 >UniRef50_Q53206 Nif-specific regulatory protein n=5 Tax=Alphaproteobacteria RepID=NIFA_RHISN Length = 594 Score = 524 bits (1350), Expect = e-147, Method: Composition-based stats. Identities = 177/602 (29%), Positives = 273/602 (45%), Gaps = 60/602 (9%) Query: 137 FIRYDDRPWSEKEFNRLQTFTQIVSVVTEQIQSRVVNNVDYELLCRERDNFRILVAITNA 196 +S +E ++T ++ + + + + + + L I+ Sbjct: 6 LDNVSKAAFSRREPRAVRTTLKVFPR--KNWLDECMTELSPKTMHKRDLGCSGLYRISKV 63 Query: 197 VLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQHPAHEQSEVD 256 +++ ++ ++ V + + +IV+ + +T + P + Sbjct: 64 LITSASLEIKLANVINTLPALLPMRRGAIVVVGAE-GEPETTATFGV---EPPSSGARHI 119 Query: 257 EAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLK 316 A +R+ L++ + +L E G T +P+ + LG L Sbjct: 120 AAKAAIDRIVAKGAPLVVPDTCKSELFQDELQSI-VSGTGQVTFIGVPMKADQETLGTLW 178 Query: 317 LAQCEEKVFTTTNL----NLLRQIAERVAIAVDNALAYQEIHRLK-----ERLVDENLAL 367 + + ++ T T L +A A AV R ++ + L Sbjct: 179 IDRAKDGAATRTQFEEEVRFLSMVANLAARAVRLNGHESRDSRPIGEEGDRKISGGDKEL 238 Query: 368 TEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSG 427 E + I+G S A+ V++ V++VAQ++S VL+ GE+GTGKE A+AIH LS Sbjct: 239 PEPTRQRPTRIDWIVGESPALRQVVESVKVVAQTNSAVLLRGESGTGKEFFAKAIHELSP 298 Query: 428 RNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPL 487 R + VK+NCAA+ AG+LES+LFGHE+GAFTGA +QR GRFELAD +L LDE+G++ Sbjct: 299 RRKKPFVKLNCAALSAGVLESELFGHEKGAFTGAISQRAGRFELADGGTLLLDEIGEISP 358 Query: 488 ELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPI 547 Q KLLRVLQE E ER+G K ++ DVRLI ATN+DL+ VA+ EFR+DLYYR+NV P+ Sbjct: 359 AFQAKLLRVLQEGELERVGGTKTLKVDVRLICATNKDLETAVAEGEFRADLYYRINVVPL 418 Query: 548 HLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIER 607 LPPLRER DIP LAK F + R RN++ L LS ++PGNVRELEN + R Sbjct: 419 FLPPLRERNGDIPRLAKVFLDRFNRENNRNLE-FTPAALEILSRCKFPGNVRELENCVRR 477 Query: 608 AVLLTRGNVLQLSLP--------------------------------------DIVLPEP 629 L R + S L P Sbjct: 478 TATLARSATIVPSDFSCQNDQCFSSMLGKTADRPLGSHSLNGLAMSKRLPVESPASLGYP 537 Query: 630 ETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKS 689 P TV + +L++ +++ V AA+ LGL + ++R I Sbjct: 538 AGPGGLTVAPHLSD--RELLISAMEKAGWV---QAKAARILGLTPRQVGYALRRHHIQVK 592 Query: 690 AL 691 + Sbjct: 593 KI 594 >UniRef50_Q1PYK0 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYK0_9BACT Length = 456 Score = 524 bits (1350), Expect = e-147, Method: Composition-based stats. Identities = 159/451 (35%), Positives = 240/451 (53%), Gaps = 22/451 (4%) Query: 254 EVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLG 313 VD+ E + ++ + ++ + + + I +P M G L Sbjct: 8 VVDDDALGREYLCETLKRGGYDVTGVGNGQQAVSRIGKEDFDMIFMDMKMPGMDGMEALE 67 Query: 314 VLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNA----LAYQEIHRL------KERLVDE 363 +K E V T + E + + + +I L +++L+ E Sbjct: 68 KVKGISSETVVILMTAYGTIESAVEAMRKGAYDYIIKPFSPDQIELLISRVNERQKLIAE 127 Query: 364 NLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIH 423 N +NVD + + ++ M + +Q++ +AQS ++VLI GE+GTGKEL+ARAIH Sbjct: 128 NKYWRSA-SNVDEKSEPVYSKNSKMSQIYEQLKKIAQSKASVLIQGESGTGKELVARAIH 186 Query: 424 NLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVG 483 S R + +++NCAA+ LLES+LFGHERGA+TGA A+RIGRFELA++ +L LDEV Sbjct: 187 YFSPRCEKPFIRVNCAALAESLLESELFGHERGAYTGAVAKRIGRFELANEGTLLLDEVS 246 Query: 484 DMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLN 543 ++ +Q KLLRVL+E+EFER+G K I+ DVR++A TNRDL K + FR DL+YRLN Sbjct: 247 EISPNIQAKLLRVLEEEEFERVGGEKTIKIDVRIVATTNRDLAKEIQKGTFREDLFYRLN 306 Query: 544 VFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELEN 603 V PIHLPPLRER EDIPLLA + K + ++ SI + LS WPGNVREL+N Sbjct: 307 VVPIHLPPLRERREDIPLLANTYLEKYSSENNSSVKSIEKRAMDYLSQYNWPGNVRELKN 366 Query: 604 VIERAVLLTRGNVLQLSLPDIVLPEPETPPA--------ATVVALEGEDEYQLIVRVLKE 655 +++RAV++ L L ++ ++ + E +LI L++ Sbjct: 367 IMQRAVVMGSSEELGLENFTSLIDIKKSEHTMCNDSVNIKKNGQSIEDAEKELIFTTLEK 426 Query: 656 TNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 T G AA L + TL +++ + I Sbjct: 427 TGG---NKTKAAGLLKITTRTLRNKLNKYVI 454 >UniRef50_A6GJF4 Sigma-54 dependent, Vanadium nitrogenase transcriptional regulator, VnfA n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GJF4_9DELT Length = 507 Score = 524 bits (1350), Expect = e-147, Method: Composition-based stats. Identities = 168/516 (32%), Positives = 250/516 (48%), Gaps = 31/516 (6%) Query: 188 RILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQH 247 +L + T A+ +++ +V+ + + + + + L + ++ + + Sbjct: 6 SLLRSPTQALNEGMELRSVVNSILRMLAERPAMVHPYLTLVEPESGESHLEEAPDMTPEQ 65 Query: 248 PAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLM- 306 + RV +S ++ H D + + PL Sbjct: 66 QRR--IRPRHGEGIVGRVVQSGRTRVV--HGSSDSFLNR---LGRSEPEGMSFICAPLRQ 118 Query: 307 SGDTMLGVLKLAQCE-EKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENL 365 ++G L + + ++ L+ +AE + A++ + +E + EN Sbjct: 119 RDGEIVGTLAVDHRGQDPAALQGDVLLIEALAEMLGRAIE---LRRRSMAEREAVELENQ 175 Query: 366 ALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNL 425 L +L IIG ++M V ++ V+ +D+TVL+ GE+GTGKEL+ARAIH Sbjct: 176 RLRAELRG-RFRVANIIGNHKSMAQVYDRIARVSSADTTVLLRGESGTGKELVARAIHFA 234 Query: 426 SGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDM 485 S R V +NCAA+P G LES+LFGHERGAFTGA R GRFELAD +LFLDE+G++ Sbjct: 235 SPRAEAPFVAVNCAALPEGTLESELFGHERGAFTGAIGARKGRFELADGGTLFLDEIGEL 294 Query: 486 PLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVF 545 Q KLLRVLQE+ FER+G + DVR++ AT+ DL+ +A EFR DLYYRLNVF Sbjct: 295 RPHTQVKLLRVLQERRFERVGGATTRRCDVRVLTATHADLEAAMARGEFREDLYYRLNVF 354 Query: 546 PIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVI 605 I LPPLRER EDI LA F + R + I + R L +WPGNVRELEN I Sbjct: 355 EIMLPPLRERGEDILALADFFVERYGPRQRPPVTRIGHDAARHLLAWDWPGNVRELENCI 414 Query: 606 ERAVLLTRGNVLQLSLPDIVLPEPETPPAA---------------TVVALEGEDEYQLIV 650 ERAVLLT V++ L P A T+ E +++ Sbjct: 415 ERAVLLTNDGVIEAEHLPPTLRGAAGPSRARASNTPASRAVAEGRTLDEALEAVEREILE 474 Query: 651 RVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 R L ++ G AA+ LG+ + R+K+ + Sbjct: 475 RALADSGG---NRASAARALGISERRMGLRVKKYRL 507 >UniRef50_Q086E2 Two component, sigma54 specific, transcriptional regulator, Fis family protein n=1 Tax=Shewanella frigidimarina NCIMB 400 RepID=Q086E2_SHEFN Length = 516 Score = 524 bits (1349), Expect = e-147, Method: Composition-based stats. Identities = 182/373 (48%), Positives = 248/373 (66%), Gaps = 2/373 (0%) Query: 317 LAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDS 376 + Q T TNL L +I ER Y +I +LK++L EN L +++ Sbjct: 146 IVQKRTVELTKTNLQLGLEIEERKKAEASLRDTYTQIKQLKDKLQAENTYLQKEVAR-QF 204 Query: 377 EFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKM 436 F EIIG S+ + V ++VE VA +TVL+LGETGTGK ++ARAIH+ S R R ++ + Sbjct: 205 NFDEIIGSSKLLSQVFQKVEQVAPMHATVLLLGETGTGKGVVARAIHSRSSRKKRPLITV 264 Query: 437 NCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRV 496 +C +P L+ES+LFG ERGAFTG+ +++IGRFELAD +LFLDE+G+MPLE+Q KLLRV Sbjct: 265 DCTTLPVALIESELFGRERGAFTGSDSKQIGRFELADGGTLFLDEIGEMPLEMQAKLLRV 324 Query: 497 LQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERP 556 +Q+ EFERLGS + I+ DVR+IAATNR+L + V + +FR DLYYRLNVFPI LPPLR+R Sbjct: 325 IQDGEFERLGSPRTIKVDVRIIAATNRNLIEEVRNGKFREDLYYRLNVFPITLPPLRQRK 384 Query: 557 EDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNV 616 EDI LL F K +++G+ ID I + L TL +WPGNVRELE+ IERAV+L+ G Sbjct: 385 EDISLLVNHFLIKFNKKIGKQIDIITQDALNTLQQHQWPGNVRELESAIERAVILSEGKS 444 Query: 617 LQLSLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTT 676 LQ+ + T ++ AL E EY+ IV+VL++T + G KGAA LGL +T Sbjct: 445 LQILDRFESFDKLATIEEPSMKALV-ELEYEHIVKVLQQTGWRIEGNKGAALILGLNPST 503 Query: 677 LLSRMKRLGIDKS 689 L +RM++ GI + Sbjct: 504 LRARMRKQGITRQ 516 >UniRef50_D2MLD9 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MLD9_9BACT Length = 480 Score = 524 bits (1349), Expect = e-147, Method: Composition-based stats. Identities = 160/473 (33%), Positives = 241/473 (50%), Gaps = 36/473 (7%) Query: 250 HEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGD 309 +D+ + + + + ++ + + + + + + T +P G Sbjct: 3 RSVLIIDDEPLMRLSMLDALKAEGYHVQGASNGEDGIQKIKTSRYDLVITDLRMPGSDGL 62 Query: 310 TMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIA----VDNALAYQEIHRLKER------ 359 ++ V K E +V T + + + + V E+ +R Sbjct: 63 QVVRVCKEYSSETEVIVITAHGSVDTAVQAMKLGAHDYVTKPFPMDELLMTVDRATKVQA 122 Query: 360 LVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIA 419 L EN AL ++L F ++G++E M VL++V++VA +D+TVLI GE+GTGKE+IA Sbjct: 123 LRQENTALRQELEG-KFNFDGMVGKNERMRQVLEKVKLVATTDATVLIFGESGTGKEVIA 181 Query: 420 RAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFL 479 AIH S R + ++K++CAA+P LLE++LFGHERGAFTGA QR+GRFELA K +LFL Sbjct: 182 NAIHRNSPRCGQALIKVSCAALPETLLEAELFGHERGAFTGALKQRLGRFELAHKGTLFL 241 Query: 480 DEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLY 539 DE+G++ +Q KLLRVLQE+ FER+G + I +DVRL+ AT ++LK+ V FR DL+ Sbjct: 242 DEIGEIAPMVQVKLLRVLQEKRFERVGGTETIGSDVRLVCATQKNLKEEVEAGRFREDLF 301 Query: 540 YRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVR 599 YRLNV + LPPLRER EDI +LA+ + R+ R + L + +PGNVR Sbjct: 302 YRLNVVQVALPPLRERKEDILVLAEHLLQRSTSRVQRVMKGFSVAARDVLLHYSFPGNVR 361 Query: 600 ELENVIERAVLLT-RGNVLQLSLP---------------------DIVLPEPETPPAATV 637 ELEN IERAV L G+ +Q + V T+ Sbjct: 362 ELENAIERAVALAQEGDEIQAWDLCGQTVCPFLGGPLQSGCGFCQEGVSNVTNARQTGTL 421 Query: 638 VALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSA 690 + E + I+ VL+ A++ LGL R L + KR G+ Sbjct: 422 AEVRERCEREYILAVLEREGWS---RTAASKSLGLSRKALWEKCKRYGLATPD 471 >UniRef50_Q2LUG3 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LUG3_SYNAS Length = 535 Score = 524 bits (1349), Expect = e-147, Method: Composition-based stats. Identities = 168/370 (45%), Positives = 251/370 (67%), Gaps = 6/370 (1%) Query: 326 TTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRS 385 + ++ R + E+ + + A A+ EI RLK++L EN+ L +++ + FGEIIG S Sbjct: 165 LISIQSMARDVTEQHRLEAELAKAFDEIKRLKDQLEAENIYLRDEI-KLKEGFGEIIGAS 223 Query: 386 EAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGL 445 + + S + ++ VA S +TVL GETGTGK + AR +H S R +R V +NCA++PA L Sbjct: 224 DVIKSTIHKIRQVAPSKTTVLFAGETGTGKGIFARFLHRESDRRDRPFVNVNCASLPANL 283 Query: 446 LESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERL 505 +ES+LFG E+GA+TG++A++IGRFELA+ ++FLDE+G++P+ELQ KLL+V++E EFER+ Sbjct: 284 IESELFGREKGAYTGSTARQIGRFELANNGTIFLDEIGEVPMELQAKLLKVIEEGEFERI 343 Query: 506 GSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKA 565 GS I+ DVR+IAATNRDL++ + FR DLY+RLN+FPI++PPLR+R DIPLL KA Sbjct: 344 GSPHPIKVDVRIIAATNRDLQEEIKKGRFRQDLYFRLNIFPINIPPLRDRKGDIPLLVKA 403 Query: 566 FTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQL-----S 620 F K ++ R+I IPA+ + +L N WPGNVREL NV+ERAV+++ G+ LQL + Sbjct: 404 FVAKFSKSHNRDIKRIPAKIMESLKNYAWPGNVRELINVMERAVIVSEGSELQLAEKIDA 463 Query: 621 LPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSR 680 +P + + + E + I++ L++T + GP+GAAQ L L+ TL +R Sbjct: 464 IPLDSSIRGDESFSTGSGETLADAEREHILKALQQTGWRIEGPRGAAQILDLQPNTLRAR 523 Query: 681 MKRLGIDKSA 690 MK+LGI + Sbjct: 524 MKKLGIKRPG 533 >UniRef50_C8W252 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W252_DESAS Length = 591 Score = 524 bits (1349), Expect = e-147, Method: Composition-based stats. Identities = 161/502 (32%), Positives = 238/502 (47%), Gaps = 35/502 (6%) Query: 192 AITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRS-HRKNKLNIYSTHYLDKQHPAH 250 + AV D+ E + ++A E++ ++ + L + Y+ + A+ Sbjct: 118 KVVGAVGVAQDITE-LQQIANELNSVNEMKSTLETIIDTGHDGYLVVNKEGYVITLNKAY 176 Query: 251 EQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDT 310 + R K LH + + + P+ Sbjct: 177 AELIDINPEDAIGRHIKEVIPE-TELHLVSQTGKTQIGEVLRVKGREAVVMRYPINKDGR 235 Query: 311 MLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQ 370 ++G + + T+ + R+ EQ Sbjct: 236 IIGAVSKVMFRDVNQFITSAKTVYSSQRRIKGE------------------------PEQ 271 Query: 371 LNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNN 430 + +IG+S M + + V VA STVLI GE+GTGKEL+A ++H S R Sbjct: 272 WASARYTVDNLIGKSHPMLRLKETVRRVALGPSTVLIRGESGTGKELLAHSLHVGSNRCL 331 Query: 431 RRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQ-RIGRFELADKSSLFLDEVGDMPLEL 489 VK+NCAA+P LLES+LFG+ GAFTGA +IG+FE A+ ++FLDE+GDMPL + Sbjct: 332 GPFVKVNCAAVPENLLESELFGYVEGAFTGAKKGGQIGKFEQANGGTIFLDEIGDMPLLM 391 Query: 490 QPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHL 549 Q KLLRVLQE+E ERLG N+ +VR++AATNR L++M+AD FR DLYYRLNV + + Sbjct: 392 QAKLLRVLQEKEIERLGDNRARHVEVRVVAATNRPLEQMIADNTFREDLYYRLNVVTLQI 451 Query: 550 PPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAV 609 P LRER +D+ L + F K G NI + A+ L N WPGNVRELENV+ERA Sbjct: 452 PSLRERIDDLKDLVEYFLAKYNHAFGLNITGLSADALELFENYNWPGNVRELENVVERAF 511 Query: 610 LLTRGNVLQL-SLPDIVL---PEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKG 665 L G+++ + LP + ++ +L + E + I L TNG Sbjct: 512 NLVDGHIIDVMHLPPYLQKFGKSKRHSINKSLPSLLEQVEKEAIADALSVTNG---NKMQ 568 Query: 666 AAQRLGLKRTTLLSRMKRLGID 687 AA+ LG+ R L ++ + GI Sbjct: 569 AAKILGISRAWLYKKIAQYGIK 590 >UniRef50_Q1DC06 Sigma-54 dependent transcriptional regulator, Fis family n=3 Tax=Proteobacteria RepID=Q1DC06_MYXXD Length = 531 Score = 524 bits (1349), Expect = e-147, Method: Composition-based stats. Identities = 189/517 (36%), Positives = 272/517 (52%), Gaps = 26/517 (5%) Query: 188 RILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQH 247 R L+ + A S D L+ + D ++ L ++ +L + Sbjct: 16 RDLLELATAEDSVGD---LLRRGLDWLTRVVRFDLATVFLL--KEGRLVAVAARGSLANA 70 Query: 248 PAHEQSEVDEAGTLTERVFKSKEMLLI--NLHERDDLAPYERMLFDTWGNQIQTLCLLPL 305 + S + +++ H D P++ +L G + ++PL Sbjct: 71 KVRQHSLPLSEFPSLRQALETRRAKAFTEEDHAHGDGDPFDGVLDLPPG---HSCMVVPL 127 Query: 306 MSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENL 365 +GD GVL L + E + + ++L+ + +A A+ +A RL + + Sbjct: 128 CAGDRCYGVLSLDRAECETYPQPVVDLVEVYGQMLATAIQSAEQRATFERLHRQDHEHAK 187 Query: 366 ALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNL 425 L QL E +S M + ++ VA++D+ VLI GETGTGKE +ARAIH Sbjct: 188 LLEAQLGGDSEGILE-TSKSPVMRDLARRARQVAETDTPVLITGETGTGKERLARAIHRW 246 Query: 426 SGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDM 485 S R ++ V +NCAA+PAGLLES+LFGH +GAFTGA+ R GRF++A +L LDEVG++ Sbjct: 247 SARADQPFVTLNCAAIPAGLLESELFGHVKGAFTGATKDRAGRFQMAHGGTLLLDEVGEL 306 Query: 486 PLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVF 545 P +LQ KLLR LQE+ FE +GS+K ++ DVR++AAT+ DL++ +A + FR DLYYRL+VF Sbjct: 307 PFDLQAKLLRALQEKTFEPVGSDKTVRADVRILAATHVDLQQAIAQKRFREDLYYRLSVF 366 Query: 546 PIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVI 605 P+ LPPLRER ED+P L + A R GR + E L L EWPGN+REL N + Sbjct: 367 PLRLPPLRERREDLPQLCAFLLEEQANRTGRRGMRVTPEGLVRLEAYEWPGNLRELANAL 426 Query: 606 ERAVLLTRGNVLQLS--------------LPDIVLPEPETPPAATVVALEGEDEYQLIVR 651 ERA +LTRG L LP+ P P V+ + + I+R Sbjct: 427 ERATILTRGTELGPESFDVPTRGAAVVAALPEEPAPAAGGPKRGPVL-TLAAVQREHIMR 485 Query: 652 VLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDK 688 VL T G V G GAA LGLK +TL SRMK+LGI + Sbjct: 486 VLTLTRGRVYGANGAAALLGLKPSTLQSRMKKLGIAR 522 >UniRef50_A3ZU96 Probable two-component response regulator n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZU96_9PLAN Length = 651 Score = 523 bits (1348), Expect = e-147, Method: Composition-based stats. Identities = 167/533 (31%), Positives = 266/533 (49%), Gaps = 26/533 (4%) Query: 158 QIVSVVTEQIQSRVVNNVDYELLCRER-DNFRILVAITNAVLSRLDMDELVSEVAKEIHY 216 Q + +T + V + + R L+ I + DM L++E+A+ Sbjct: 130 QYRAALTAHLLGYGVGLIRQRVARSARLKRLEQLLTIIESWQKTRDMHTLLTEMAEAAAE 189 Query: 217 YFDIDDISIVLRSHRKNKLNIYSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINL 276 F + SI L K L + V + + V ++ E ++ Sbjct: 190 LFGSERASIFLWDRPKKTLVGRPALG-----IEGGELRVPDDRGVVGHVVQTGEPRRVDE 244 Query: 277 HERDDLAPYERMLFDTWGNQIQTLCLLPLM-SGDTMLGVLKLAQCEEKVFTTTNLNLLRQ 335 ++D++ R + + + L +PL+ + G +L + FT + L + Sbjct: 245 LDKDEI---NRDIDQSLAFHTRNLLCVPLVGRRGRIFGAFELINKQLGNFTAEDQLGLTE 301 Query: 336 IAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQV 395 +A + A++N + I + RL D + E+IG A+ ++ + Sbjct: 302 LAAHASSALENTQETERILASRNRLAD-----------AAAAAAELIGDCPAIATLRGTI 350 Query: 396 EMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHER 455 VA+S+ VL+LGE GTGKE+++++IH S R + +V +NCAA+P LLES+LFG E+ Sbjct: 351 RRVAESNLPVLVLGENGTGKEVVSQSIHFRSDRRAQPLVAVNCAAVPDTLLESELFGREK 410 Query: 456 GAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDV 515 GAFTGA R G+FE+AD +LFLDE+GD+ L Q KLLRVL++Q R+G IQ DV Sbjct: 411 GAFTGADETRPGKFEMADGGTLFLDEIGDLSLSGQSKLLRVLEDQLIMRVGGTSEIQVDV 470 Query: 516 RLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLG 575 R+IAATNRDL ++V +++FR DL++RL+V I LPPLRER DI LA F + + G Sbjct: 471 RIIAATNRDLGELVREKKFREDLFFRLHVVTIELPPLRERGTDILTLANHFLHHFSLKTG 530 Query: 576 RNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDI--VLPEPETPP 633 R ++ R L WPGNVREL N +ER + L V+Q + + P Sbjct: 531 RQTPTLSEAAQRRLLAHAWPGNVRELRNTMERVIFLHSDEVIQPESLQFHSLDSHDDAPM 590 Query: 634 AATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 + E + + I R + G ++ AA+++G+ R+ L +MK+L + Sbjct: 591 NLPLNDATAEFQRRYIQRHVDAAQGNIS---AAAEKIGMHRSNLYRKMKQLEM 640 >UniRef50_Q0SQI9 Phosphocarrier HPr/sensory box protein/sigma-54 dependent transcriptional regulator n=21 Tax=Clostridium RepID=Q0SQI9_CLOPS Length = 668 Score = 523 bits (1348), Expect = e-147, Method: Composition-based stats. Identities = 151/401 (37%), Positives = 219/401 (54%), Gaps = 18/401 (4%) Query: 301 CLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERL 360 + T+L + + V +T + + + + + I L +L Sbjct: 275 LRAKVFKEKTLLKDVIHKKNGINVISTIDPLFID---GQFKGVISTSRPVSLIKELMSKL 331 Query: 361 ---VDENLALTEQLNNV---DSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTG 414 E + +S F IIG + + ++ + +++ STVLI GE+GTG Sbjct: 332 NKSEQELDYYKNEFLRQLSKNSSFNNIIGSTRTLKDIMYMCQKASETTSTVLIRGESGTG 391 Query: 415 KELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADK 474 KELIA+AIHN S R N+ V++NCA++P LLES+LFG+E+GAFTGA + G+F +AD Sbjct: 392 KELIAKAIHNNSNRKNKPFVRVNCASIPENLLESELFGYEKGAFTGAVQSKPGKFAIADT 451 Query: 475 SSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREF 534 ++FLDE+GDMPL +Q KLLRVLQE+E E +G DVR+IAATNR+L++M+ D F Sbjct: 452 GTIFLDEIGDMPLSMQVKLLRVLQEREIESVGGITPKNIDVRVIAATNRNLEEMIEDGSF 511 Query: 535 RSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEW 594 R DLYYRLNV I+LPPLRER EDIP LA+ F K+ ++L + I I + L L W Sbjct: 512 REDLYYRLNVLGINLPPLRERKEDIPELAEHFITKLNKKLHKTILGIKQDALNLLIEYSW 571 Query: 595 PGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPP-----AATVVALEGEDEYQLI 649 PGN+RELEN++ERA+ L G+ + S L E+ + E E Q+I Sbjct: 572 PGNIRELENIMERAINLCDGDYIDSSYLPSYLKPVESKSFNLNIDIDHILPFEEYEKQII 631 Query: 650 VRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSA 690 +K+ A + LGL T+ + K+ I+ Sbjct: 632 EAAMKKYK----SFNKAGKALGLTHRTVSLKCKKYNIEVKK 668 >UniRef50_A0L6X2 Transcriptional regulator, NifA, Fis Family n=6 Tax=Proteobacteria RepID=A0L6X2_MAGSM Length = 550 Score = 523 bits (1348), Expect = e-147, Method: Composition-based stats. Identities = 163/527 (30%), Positives = 257/527 (48%), Gaps = 33/527 (6%) Query: 185 DNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLD 244 L + + ++ ++ V + + + I L +L + + H + Sbjct: 27 SQLEALYQVGRILAEEGNLTAVLDGVLEAVEKMGGMSKSIITLSDPETGRLLVRAVHDSN 86 Query: 245 KQ--HPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCL 302 + + + + ++ + L + + L D Sbjct: 87 EGFAPLGGDDIVYRPGEGVMGSIMQNGNTFICELPANEQRFLHRLGLLDP----TLPFIG 142 Query: 303 LPLMSGDTMLGVLKLA-QCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLK--ER 359 +PL +GVL + F + L +A V+ V + Y+++ L + Sbjct: 143 VPLFLDAKPIGVLAAQPVFGNRAFLREQAHFLEMVANLVSQKVRSNQRYEQLQALLSSQA 202 Query: 360 LVDENLALTEQLNNVDSEFGE---IIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKE 416 + A++ + + G ++G++ +M V+ AQ DSTVL+LGE+GTGKE Sbjct: 203 VGRSTTAMSTAIRIENERSGMQPVLLGKAASMKQVVNMALKAAQFDSTVLVLGESGTGKE 262 Query: 417 LIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSS 476 L+A +H S R +R VK+NCA++ LLES+LFGHE+GAFTGA A R GRFE+AD + Sbjct: 263 LVANTVHYNSARASRPFVKVNCASLSDNLLESELFGHEKGAFTGAIATRKGRFEMADGGT 322 Query: 477 LFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRS 536 LFLDE+G++ Q KLLRVLQE EFER+G + I+ +VR++AATNRDL V FR+ Sbjct: 323 LFLDEIGEISPSFQAKLLRVLQEGEFERVGGARTIKVNVRVVAATNRDLSAEVQKGNFRA 382 Query: 537 DLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPG 596 DL+YRL+V PI +P LRER ED+PLL +A +I+ + R + SI E LR L EW G Sbjct: 383 DLFYRLHVLPIEIPALRERMEDLPLLTEALLERISTKQHRPL-SITKEALRRLMMYEWAG 441 Query: 597 NVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETP-----------------PAATVVA 639 NVRELEN +ERA +L+ + S P P++ ++ Sbjct: 442 NVRELENCLERAAVLSDEGHIDASHIIFSSGANREPMPALTNHRIHNASSCALPSSADLS 501 Query: 640 LEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 +E + ++ L+++ V AA+ LG+ + R+K L I Sbjct: 502 DPTLEERERVMGALEQSGWV---QAKAARLLGMTPRQVAYRIKILNI 545 >UniRef50_A0LIA2 Sigma54 specific transcriptional regulator, Fis family n=7 Tax=Proteobacteria RepID=A0LIA2_SYNFM Length = 1139 Score = 523 bits (1347), Expect = e-147, Method: Composition-based stats. Identities = 178/361 (49%), Positives = 244/361 (67%), Gaps = 6/361 (1%) Query: 330 LNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMY 389 L ++ + ER + EI RLK +L +N+AL E++ ++ S +I+ RS AM Sbjct: 784 LAVIEDVTERKLMQEQLQNRLLEIERLKGQLEQDNIALREEV-SLLSPHDDIVARSPAMR 842 Query: 390 SVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESD 449 VL +VE VA +DSTVLI GETGTGKELIARA+HNLS R R +V +NCA++P L+ES+ Sbjct: 843 QVLLRVEQVAPTDSTVLITGETGTGKELIARAVHNLSARKGRPLVTVNCASLPPTLMESE 902 Query: 450 LFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNK 509 LFG E+GA+TGA ++ GRFE+AD +LFLDEVG++P ELQ K+LRVL+E FERLGS K Sbjct: 903 LFGREKGAYTGALSRMAGRFEVADGGTLFLDEVGELPPELQAKMLRVLEEGRFERLGSTK 962 Query: 510 IIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFK 569 + +VR++AATNRDL ++V FR DLYYRLNVFPI +PPLRERPEDIP L AF + Sbjct: 963 SLHVNVRILAATNRDLAQLVQAGRFRRDLYYRLNVFPIAIPPLRERPEDIPPLVWAFIHQ 1022 Query: 570 IARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEP 629 +R+G+++ + ++ L WPGNVREL NVIE A++++ G+ L++ P ++ E Sbjct: 1023 FEKRMGKHVQRVLKRSMDALERHAWPGNVRELRNVIEHAMIVSSGSTLKV-FPPMIRAED 1081 Query: 630 ETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKS 689 + + E E + I+RVL VAG GAA+ LGLK TTL +RMK+LG+ + Sbjct: 1082 SSAEVLNL----EESERRHILRVLTLAGWRVAGKGGAAEILGLKPTTLEARMKKLGVRRP 1137 Query: 690 A 690 Sbjct: 1138 R 1138 >UniRef50_B3E6R3 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=B3E6R3_GEOLS Length = 447 Score = 523 bits (1347), Expect = e-146, Method: Composition-based stats. Identities = 168/444 (37%), Positives = 237/444 (53%), Gaps = 17/444 (3%) Query: 255 VDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGV 314 VD+ + + + + IN D A M+ + I T ++P + G +L + Sbjct: 9 VDDDLRMRQLIRDTLASEGINAVLCSDGAEAAEMVLRQTTDLIITDLMMPQIDGMELLNL 68 Query: 315 LKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNAL----------AYQEIHRLKERLVDEN 364 A + V T + + + + L + ++ RL DEN Sbjct: 69 ALQANPDCLVVVITGYGSIESAVQAIKNGAYDYLQKPFEPDQLLLVVQRALVRLRLQDEN 128 Query: 365 LALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHN 424 L +Q+ + E++G S+ M ++ + +A D+TVLI GETGTGKEL AR IH Sbjct: 129 RQLRQQVAGCQA--DELLGASKQMTTLKALITRIAPFDTTVLIQGETGTGKELAARMIHR 186 Query: 425 LSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGD 484 LS R ++R + +NC A+P LLES+LFGH RGAFTGA + G E AD +LFLDE+ Sbjct: 187 LSQRRDQRFLPINCGALPETLLESELFGHARGAFTGADKDKKGLLESADHGTLFLDEINT 246 Query: 485 MPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNV 544 Q KLLRVLQE F R+G ++ D+R+IAA+N L+K V FRSDL+YRLNV Sbjct: 247 TSPAFQVKLLRVLQEGSFIRVGDHEPRSVDLRVIAASNTTLEKEVQTGRFRSDLFYRLNV 306 Query: 545 FPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENV 604 I LPPLRER DI LLA F + AR+ G + SI E L++L N WPGNVRELEN+ Sbjct: 307 VTITLPPLRERNGDIGLLAHYFLTRYARQYGVQLSSISPEALQSLRNYHWPGNVRELENI 366 Query: 605 IERAVLLTRGNVLQLSLPDI--VLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAG 662 IERAV++ GN LQ V P + + + E E + I+RVLK T G Sbjct: 367 IERAVIMADGNELQPQYLPRFSVSDTPLSSSSDQELLPMAEVERRHIIRVLKATAGH--- 423 Query: 663 PKGAAQRLGLKRTTLLSRMKRLGI 686 A++ LG+ +L ++K+ G+ Sbjct: 424 RGKASKLLGISLASLWRKVKQYGL 447 >UniRef50_B8DK61 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfovibrio RepID=B8DK61_DESVM Length = 448 Score = 523 bits (1347), Expect = e-146, Method: Composition-based stats. Identities = 159/444 (35%), Positives = 231/444 (52%), Gaps = 15/444 (3%) Query: 255 VDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGV 314 VD+ + +R+ + + + + D + + + LP M G +L Sbjct: 9 VDDEPVVCKRLSHALFKEGYEVEAFMSARSFLEAMIDRPFDVVFSDMRLPDMDGLELLPK 68 Query: 315 LKLAQCEEKVFTTTNLNLLRQIAERVAIA----VDNALAYQEIHRLKERLVD------EN 364 +K + E +V T ++ E + V + + EI + R + EN Sbjct: 69 IKALRPETEVVIVTGYGSIQTAIEAMREGAFHYVTKPVNFTEIRAIARRAQEKIGMRMEN 128 Query: 365 LALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHN 424 L E L S I+G S A+ + V VA D VLI GE+GTGK L+A A+H+ Sbjct: 129 ARLREALLG-SSGLSSIVGNSPAIQDLFALVRKVAPVDCNVLIQGESGTGKALVALALHH 187 Query: 425 LSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGD 484 LS R N+ V NC L+ S+LFG+E+GAFTGASA ++G E A ++FLDEVG+ Sbjct: 188 LSPRKNQPFVTFNCGGFTEELISSELFGYEKGAFTGASASKVGLLEAASGGTVFLDEVGE 247 Query: 485 MPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNV 544 MPL +Q +LL VLQE+ R+G K + D+R+IAATNRDLK V FR DL++RLNV Sbjct: 248 MPLSMQVRLLHVLQERRILRVGGTKPVDLDIRVIAATNRDLKAEVEKGTFREDLFFRLNV 307 Query: 545 FPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENV 604 LP L +R EDIPLL + F K +++ I + L L +PGNVRELEN+ Sbjct: 308 VSTTLPRLADRREDIPLLVRHFIDKYGLAFRKSVQGIDEQALAALQGYSFPGNVRELENI 367 Query: 605 IERAVLLTRGNVLQ-LSLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGP 663 IERAV LT G + L LP+ + + E E + ++R+L++T Sbjct: 368 IERAVALTDGQTIGLLDLPEDIRNLEFATLEGDGLPTLAEVERRYVIRILEKTG---YNK 424 Query: 664 KGAAQRLGLKRTTLLSRMKRLGID 687 + AAQ LG+ RTTL ++K G++ Sbjct: 425 RLAAQVLGVPRTTLWRKLKEYGVE 448 >UniRef50_B8GM58 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GM58_THISH Length = 509 Score = 523 bits (1347), Expect = e-146, Method: Composition-based stats. Identities = 194/514 (37%), Positives = 265/514 (51%), Gaps = 25/514 (4%) Query: 189 ILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQHP 248 +L AI N V + + + + + ++ + ++L + Sbjct: 9 VLQAIANGVAAETG-EAFFDALVQHLAGALNVQSAWVTEWHPEASRLR---ALSFWSRGR 64 Query: 249 AHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMS- 307 E GT E V + ++++ + D G + +PL Sbjct: 65 FVPDYEYPIHGTPCEAVISGQRLVVVPERVVELYPDDP----DLPGQDAVSYMGMPLRDT 120 Query: 308 GDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLAL 367 T+LG L + T + R A + + + L DE AL Sbjct: 121 DGTVLGNLAVLDSRPLEADATCQAVFGIFGARAAAELARLRRDRRLRALN----DEAAAL 176 Query: 368 TEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSG 427 +L ++ F EI+G S A+ +L + VA S++TVLI GETGTGKELIARAIH S Sbjct: 177 RAELGSLR-GFEEILGESAALRRLLADIGRVAPSEATVLITGETGTGKELIARAIHRHSR 235 Query: 428 RNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPL 487 R+ ++K+NCAA+ A L ES+ FGHE+GAFTGA+ +R GRF+LAD +LFLDEVG+MPL Sbjct: 236 RSQGPLIKVNCAAITATLQESEFFGHEKGAFTGAAQRRDGRFKLADGGTLFLDEVGEMPL 295 Query: 488 ELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPI 547 +LQ KLLRVLQE EFE +GS + ++ DVR+IAAT+RDL +MV + FR DL YRLNVFP+ Sbjct: 296 DLQAKLLRVLQEGEFEPVGSGRTVRVDVRVIAATHRDLTQMVREGGFREDLLYRLNVFPL 355 Query: 548 HLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIER 607 H PPLRER ED+ LLA+A ++AR+ G + + L WPGNVRELENVIER Sbjct: 356 HAPPLRERGEDVVLLAEAIATRLARQEGATLAPLSPADRARLKAHPWPGNVRELENVIER 415 Query: 608 AVLLT----RGNVLQL--SLP-----DIVLPEPETPPAATVVALEGEDEYQLIVRVLKET 656 A + G VL L +LP P A A + E I R L Sbjct: 416 AWITGTDTPDGRVLNLVRALPGSEVTPRTPGLAADPDAVFTAAEMLQMERSNIERALVSC 475 Query: 657 NGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSA 690 ++G GAA+ LGL TL SRMK LGI + Sbjct: 476 QWKLSGVGGAARLLGLHPNTLASRMKSLGIRRPD 509 >UniRef50_A8IQ96 Transcriptional regulator n=18 Tax=Proteobacteria RepID=A8IQ96_AZOC5 Length = 694 Score = 523 bits (1347), Expect = e-146, Method: Composition-based stats. Identities = 192/390 (49%), Positives = 246/390 (63%), Gaps = 22/390 (5%) Query: 304 PLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDE 363 PL ++G V ++ R+ E++ A+ E+ RL+ERL E Sbjct: 314 PLRDRGRLIGA---------VVVFRDVTQKREANEQLRAAL------AEVDRLRERLEME 358 Query: 364 NLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIH 423 N L E++ ++ IIGRSEA+ VL+QV++VA +D+TVLI GE+GTGKELIARAIH Sbjct: 359 NAYLQEEI-RAETSHRGIIGRSEAIKKVLRQVDLVAPTDATVLITGESGTGKELIARAIH 417 Query: 424 NLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVG 483 + S R R ++++NCAA+P L ES+ FGH RGAFTGA R+GRFELAD+ +LFLDEVG Sbjct: 418 DASERRERPLIRVNCAAIPRELFESEFFGHVRGAFTGALRDRVGRFELADRGTLFLDEVG 477 Query: 484 DMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLN 543 ++PLELQ KLLRVLQE +FER+G + Q DVR+IAATNRDLK V FR DL+YRL+ Sbjct: 478 EIPLELQSKLLRVLQEGQFERIGEERTRQVDVRIIAATNRDLKAAVRAGRFREDLFYRLD 537 Query: 544 VFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELEN 603 V PI PLRER EDIPLLA F + R+ + A +R L +WPGNVREL+N Sbjct: 538 VMPIESVPLRERREDIPLLAAHFLDGVRRKPADGPLQLSAGDMRRLQTYDWPGNVRELQN 597 Query: 604 VIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGEDEYQL-----IVRVLKETNG 658 VIER ++L R L + LPD P P LE E + +L I+ L+ G Sbjct: 598 VIERGIILARNGRLHIDLPDREAPAT-AQPVPPSAELETEADRRLRLRTSILAALEAAGG 656 Query: 659 VVAGPKGAAQRLGLKRTTLLSRMKRLGIDK 688 V+GP GAA+RLGLK TTL SRMK LGI Sbjct: 657 KVSGPGGAAERLGLKPTTLASRMKTLGITP 686 >UniRef50_A9AYA4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AYA4_HERA2 Length = 457 Score = 523 bits (1347), Expect = e-146, Method: Composition-based stats. Identities = 167/427 (39%), Positives = 223/427 (52%), Gaps = 19/427 (4%) Query: 274 INLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLL 333 + +M + + +P G T+L L+ V T Sbjct: 33 LTEPAEHGGEVLAKMTKKHPYDLLIMDVRMPGQDGLTILEQLRKNGITTPVIMMTAHGTS 92 Query: 334 RQIAERVAIAVDNA----LAYQEIHRLKERLVDENL---ALTEQLNNVDSEFGEIIGRSE 386 + I + +E+ + +RL D + E ++IG S Sbjct: 93 STAIRAIQIGAYDYVIKPFDVEEVTLVVKRLFDHQQLASKVRELEAKSFDPRDKMIGNSP 152 Query: 387 AMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLL 446 AM + KQ+ VA +D+TVLI GETGTGKE++A IH S R N MVK+NCAA+P LL Sbjct: 153 AMQEIYKQIGRVAHTDATVLITGETGTGKEVLANLIHVNSARRNGPMVKVNCAALPESLL 212 Query: 447 ESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLG 506 ES+LFGHE+GAFTGA AQR GRFELA K S+FLDE+G+M L Q KLLR+LQE+EFER+G Sbjct: 213 ESELFGHEKGAFTGAVAQRKGRFELAHKGSIFLDEIGEMTLATQKKLLRILQEREFERVG 272 Query: 507 SNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAF 566 ++ DVR+IAATNRDL+ V FR DLYYRLNV +HLP LR+R DIPLLA+ F Sbjct: 273 GTTTVRVDVRVIAATNRDLEADVRAGTFREDLYYRLNVITLHLPALRQRIGDIPLLAEFF 332 Query: 567 TFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVL 626 K I E + L+N +WPGNVR+LE+ IERAV+L+RGNV+ +V Sbjct: 333 LDKYRYAPSSPPARISEEAMERLNNYDWPGNVRQLEHEIERAVILSRGNVITSEHMSLVP 392 Query: 627 PEPET---------PPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTL 677 +T+ L + E + L + + K AA+ LGL Sbjct: 393 SSRSALQVDIAARLREKSTLEELLADVERLALQEALVQHD---DDLKVAARSLGLSEAEF 449 Query: 678 LSRMKRL 684 R K+ Sbjct: 450 QKRQKKY 456 >UniRef50_B8FCN8 Transcriptional regulator, NifA subfamily, Fis Family n=2 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FCN8_DESAA Length = 529 Score = 522 bits (1346), Expect = e-146, Method: Composition-based stats. Identities = 167/502 (33%), Positives = 265/502 (52%), Gaps = 8/502 (1%) Query: 188 RILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQH 247 + S L++++ + + + +S+ L + + K Sbjct: 7 EFFKNTVLRICSSLEVEKALWHSLLYVREHIPASQMSLHLYNPVTGIAETVAQATPGKYG 66 Query: 248 PAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMS 307 ++ + E +S+ + +N D +A + +G +Q+ +L L+ Sbjct: 67 RLSVKTHLSEKARRQVEAQRSQRLRRVNRVSDDPVAEE---VSRYFGGAVQSALILDLVI 123 Query: 308 GDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLAL 367 ++GVL L K +T + L R + E A+A+ N++ +E+++LKE L D+N Sbjct: 124 EGRLIGVLTLHGEVGKTYTARHEQLFRLLNEPFAVALSNSMRQRELNKLKELLTDDNPYF 183 Query: 368 TEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSG 427 E N E++G + V++ VA +S VL+LGETG GKELIA A+H S Sbjct: 184 QE--NEEAFSENEVVGADYGLRGVMEMARQVAPLESPVLLLGETGVGKELIASAVHRASP 241 Query: 428 RNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPL 487 R N ++K+NC A+P L++S+LFGHE+GAFTGAS+ + GRFE AD+ ++FLDEV ++ Sbjct: 242 RRNGPLIKVNCGAIPDTLIDSELFGHEKGAFTGASSMKRGRFERADEGTIFLDEVAELSP 301 Query: 488 ELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPI 547 E Q +LLRVLQE+E ER+G+ + D+R+IAAT+R+L +V+ FR DL +RL VFPI Sbjct: 302 EAQVRLLRVLQEKEIERVGAAETTHVDIRVIAATHRNLDGLVSMGRFRQDLLFRLKVFPI 361 Query: 548 HLPPLRERPEDIPLLAKAFTFKIARRLGR-NIDSIPAETLRTLSNMEWPGNVRELENVIE 606 +PPLR+R DIP L + F + + I + + L + WPGNVRELEN +E Sbjct: 362 VIPPLRDRKGDIPSLVQHFVRIKSLDMKLGTIPPLAPGAMDKLMDYSWPGNVRELENAVE 421 Query: 607 RAVLLTRG--NVLQLSLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPK 664 RA++L+ G V Q + + + + L+ + L G V G Sbjct: 422 RALILSGGKKPVFQEFDLGLKPGPKTKNVESLSLPTMDQAMADLMRKALVLAKGRVEGKG 481 Query: 665 GAAQRLGLKRTTLLSRMKRLGI 686 GAA+ LG+ TL +RMK+LG+ Sbjct: 482 GAAEILGMHPMTLRNRMKKLGV 503 >UniRef50_Q1PYM7 Similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYM7_9BACT Length = 469 Score = 522 bits (1346), Expect = e-146, Method: Composition-based stats. Identities = 166/469 (35%), Positives = 241/469 (51%), Gaps = 32/469 (6%) Query: 247 HPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLM 306 P VD+ T+ V + + + + I LP + Sbjct: 2 KPKGIILIVDDEETIRLSVREFLDAQGYEAIAAGSCEEALEKMDTFMPDLILLDLRLPNI 61 Query: 307 SGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIA----VDNALAYQEIHRLKERLVD 362 +G ++ +K + T + E + + ++ + + E+ + Sbjct: 62 NGVELIEKIKEKDPNALMVVMTGYGSVDSAVEVMRLGAYDYLEKPFKLDRLRSVVEKALR 121 Query: 363 ENLALTE--QLNNVDSEFGE-----IIGRSEAMYSVLKQVEMVAQSDST-VLILGETGTG 414 E ++ F E IIG S M + ++ VA+S ST VLI GE+GTG Sbjct: 122 RQGLRQEVLEIKEKQWTFDEESDGIIIGNSPQMKEIYSLIKQVAKSSSTTVLIQGESGTG 181 Query: 415 KELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGA-SAQRIGRFELAD 473 KEL+ARA+H LS R + R V +NCAA+ LLE++LFG+E+GAFTGA +A + G FE+AD Sbjct: 182 KELVARAVHRLSARKSGRFVDINCAALTESLLEAELFGYEKGAFTGAATAGKPGLFEIAD 241 Query: 474 KSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADRE 533 K ++FLDE+G+M + LQ KLLR+LQE++F+R+G + I+ DVR+IA+TNR+L++ +A Sbjct: 242 KGTVFLDEIGEMGVLLQAKLLRILQERQFKRVGGIQDIKIDVRIIASTNRNLEEEIASGN 301 Query: 534 FRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNME 593 FR DLYYRL V PI++PPLRER EDI LL K F K G+NI IP +T R L Sbjct: 302 FRKDLYYRLKVLPIYVPPLRERREDIMLLVKYFIHKYNNEFGKNICDIPPDTERILLEYG 361 Query: 594 WPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPET----------------PPAATV 637 WPGN+REL+NV+ER VL+ G+ L + + Sbjct: 362 WPGNIRELKNVVERGVLIANGSALSPKYVANISVGKKESESLAGITVDGNTDCVSSDGLD 421 Query: 638 VALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 E Q I VLKET+ AA+ LG+ RTTL +++K GI Sbjct: 422 ARSLAFMEKQHIENVLKETSWR---RTEAARVLGINRTTLYNKIKEYGI 467 >UniRef50_D2QRC3 Sigma 54 interacting domain protein n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QRC3_9SPHI Length = 657 Score = 522 bits (1345), Expect = e-146, Method: Composition-based stats. Identities = 184/628 (29%), Positives = 291/628 (46%), Gaps = 38/628 (6%) Query: 87 ILSRPDTLHCSYEEFCETWPQLDAGGLYPKFGHYCLMPLAAEGHI-----FGGCEFIRYD 141 IL + + K H + L+A E + Sbjct: 42 ILQKDKPHLVLLDIRLNGSESGIDLARKLKAEHIAFVYLSANSSQKVLEEAKKTEPYGFL 101 Query: 142 DRPWSEKEFNRLQTFTQIVSVVTEQIQSRVVNNVDYELLCRERDNFRILVAITNAVLSRL 201 +P+ EK+ +++ + N L +E R L+ I+ + L Sbjct: 102 VKPFREKDL----LVALDIALYLHK-------NRLESKLRQEALLERQLLEISQ---NAL 147 Query: 202 DMDELVSEVAKEIHYYFDID------DISIVLRSHRKNKLNIYSTHYLD---KQHPAHEQ 252 + + ++A+ I D R L + Y + Sbjct: 148 NAKQTFLQIARAIRTVIPFDLIVCGTRPFTASRFGDYGYLRVGLDDYQFIGRDELLTISG 207 Query: 253 SEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERML-FDTWGNQIQTLCLLPLMSGDTM 311 + D + E + N + D+ + +++ + P+ D Sbjct: 208 LKSDALSNIIENSHTDTHVATYNNNATTDVVHLTPLQKLWLTIYNLESYLVFPVALSDGS 267 Query: 312 LGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQL 371 +++T ++L +L + A + + RL + Q Sbjct: 268 WVHYTFYSRRREMYTQSHLAMLTGFISSLTKATEKLVQSDLSSTYTTRLSVDRKHDRAQD 327 Query: 372 NNVDSE-FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNN 430 + F IIG + + L V VA +++VLILGE+GTGKE IA+AIH+LS R Sbjct: 328 SQGSVPKFKGIIGNHPLLLAALDLVTQVAPYNTSVLILGESGTGKESIAQAIHSLSVRKT 387 Query: 431 RRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQ 490 +K+NCAA+PA L+ES+LFGHE+GAFTGA +R G+FE + + +LFLDE+G+MPL++Q Sbjct: 388 GPFIKVNCAAIPAALIESELFGHEKGAFTGAIEKRKGKFEQSHEGTLFLDEIGEMPLDMQ 447 Query: 491 PKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLP 550 +LLRVLQE+E + +G + DVR++AATNR+L++ VA+ FR DLYYRLNVFPI LP Sbjct: 448 VRLLRVLQEKEIDPVGGKSPKKVDVRVVAATNRNLEREVAEGRFRLDLYYRLNVFPITLP 507 Query: 551 PLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVL 610 PLRER DI L+ + + ++ + I A + L WPGN+RELENV+ER+V+ Sbjct: 508 PLRERKSDIQALSVYVANRFCKEFSKDFNGISAGMMDELEGYTWPGNIRELENVLERSVI 567 Query: 611 LTRGNVLQLSLPDIVLPEPETPPAATVVALEGED-------EYQLIVRVLKETNGVVAGP 663 L G +L L +L + P+ + G+ E + ++ VLK T G++ G Sbjct: 568 LNDGQS-ELELKQSLLGTTDKVPSKVAIETLGDVRRIQRETEREYLISVLKNTKGLIRGA 626 Query: 664 KGAAQRLGLKRTTLLSRMKRLGIDKSAL 691 GAA+ L +K TTL +R+ +LGI + L Sbjct: 627 NGAAELLHIKPTTLEARLAKLGIQREDL 654 >UniRef50_C6HY50 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HY50_9BACT Length = 477 Score = 522 bits (1345), Expect = e-146, Method: Composition-based stats. Identities = 161/373 (43%), Positives = 220/373 (58%), Gaps = 20/373 (5%) Query: 318 AQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSE 377 + N LL+ V V+ ++ LK+ L Sbjct: 117 DRHRRTRLVRVNTALLKDADGHVVGGVEIFHDVTQLAELKKEL------------KGRYA 164 Query: 378 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMN 437 FG+IIG+SE M + + +VAQS STVLI GE+GTGKELIA AIH S R + +K+N Sbjct: 165 FGKIIGQSEKMRELFDLLPVVAQSKSTVLIEGESGTGKELIAHAIHENSPRKDGPFIKVN 224 Query: 438 CAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVL 497 CAA+ G+LES+LFGH RGAFTGA + + GRFELA +LFLDE+G++ +Q KLLRVL Sbjct: 225 CAALSEGVLESELFGHVRGAFTGAVSSKPGRFELASGGTLFLDEIGEISASMQVKLLRVL 284 Query: 498 QEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPE 557 QE+EFER+G K ++ DVR+IAATNRDLK + FR DLYYRL V P+ LPPLRER E Sbjct: 285 QEEEFERVGGTKTLKVDVRVIAATNRDLKAAIDAGTFRRDLYYRLRVVPLFLPPLRERRE 344 Query: 558 DIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVL 617 DIPLL +F + G+N+ + E L N +PGN+REL+N+IE AVLL+ G + Sbjct: 345 DIPLLISSFLSRYNAEFGKNVVGLSQEAQNILMNHSYPGNIRELQNIIEHAVLLSTGRTI 404 Query: 618 QL-SLPDIVLPEPETPPAATVV----ALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGL 672 + LP + P PE A V E +I + +++T G ++ AA+ LG+ Sbjct: 405 GVRELPRDLAPIPEESSFADVALSRSNALRTMEDVMIRKAVEKTQGNMS---QAAKLLGI 461 Query: 673 KRTTLLSRMKRLG 685 R+TL +++ +G Sbjct: 462 GRSTLWRKLREMG 474 >UniRef50_A8ZV27 Transcriptional regulator, Fis family n=2 Tax=Desulfobacteraceae RepID=A8ZV27_DESOH Length = 510 Score = 522 bits (1344), Expect = e-146, Method: Composition-based stats. Identities = 177/344 (51%), Positives = 244/344 (70%), Gaps = 5/344 (1%) Query: 349 AYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLIL 408 + EI +LK++L E L E++ ++ IIG+S+ + VL ++E +A SD+TVL+L Sbjct: 171 SLSEIKKLKQQLEAERAYLQEEI-KLEYNHEHIIGQSDGLKYVLYKIEQIADSDTTVLVL 229 Query: 409 GETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGR 468 GETGTGKEL+ARAIHNLS R NR M+K+NCAA+P L+ES+LFGHE+GAFTGA A+ GR Sbjct: 230 GETGTGKELVARAIHNLSRRKNRTMLKVNCAALPTNLIESELFGHEKGAFTGAHARHTGR 289 Query: 469 FELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKM 528 FE+A+ ++LFLDE+G++PLELQPKLLRVLQ+ EFERLGS+ + D R+IAATNR+L++ Sbjct: 290 FEVANGTTLFLDEIGELPLELQPKLLRVLQDGEFERLGSSHSTKVDARIIAATNRNLEEE 349 Query: 529 VADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRT 588 V + FR DL+YRLNVFPI +PPLR+R +DIPLL + + KI+RR+G+ I++IP++ + T Sbjct: 350 VRNGNFREDLWYRLNVFPITMPPLRDRLDDIPLLVEFYVKKISRRMGKTIETIPSKIMET 409 Query: 589 LSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGEDEYQL 648 L WPGNVRELENV+ERAV+ + G L+L + ++ E Sbjct: 410 LQAYPWPGNVRELENVLERAVINSSGTKLRLVD----ELKRPFRGLSSSEKTLAAVERDH 465 Query: 649 IVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSALI 692 IVRVL++T V G AA+ LGL R+TL +RM++L I I Sbjct: 466 IVRVLEQTQWKVGGKNSAAEILGLDRSTLRARMRKLNISPPKTI 509 >UniRef50_C0QIQ0 Sigma-54 dependent DNA-binding response regulator (NtrC-type regulator) n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QIQ0_DESAH Length = 451 Score = 521 bits (1343), Expect = e-146, Method: Composition-based stats. Identities = 162/426 (38%), Positives = 221/426 (51%), Gaps = 18/426 (4%) Query: 276 LHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQ 335 + D + T + + + LP M G +L +K T + Sbjct: 30 VESVDSGEKALERIRQTRFDLVVSDLKLPGMDGMEVLKAIKQYDRTILFVIITAYGTVDT 89 Query: 336 IAERVAIAVDNA----LAYQEIHRLKER------LVDENLALTEQLNNVDSEFGEIIGRS 385 + ++ +E+ + E+ L +NL L +QL F I+G S Sbjct: 90 AVSAMKQGAEDYILKPFDMEELRLVVEKTLEKRGLFLDNLRLQQQLEK-KYTFENIVGTS 148 Query: 386 EAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGL 445 E+M V K + V +S STVLI GETGTGKEL+ARAIH S R + + +NCAA+ L Sbjct: 149 ESMMGVFKTINRVKESRSTVLIRGETGTGKELVARAIHFNSARALKPYLPVNCAALNEDL 208 Query: 446 LESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERL 505 + S+LFGH +GAFTGA A + G FE AD +LFLDE+GD+ LQ LR L++ E + + Sbjct: 209 MASELFGHVKGAFTGAVADKRGLFEAADGGTLFLDEIGDVGQGLQQTFLRALEKGEIQPV 268 Query: 506 GSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKA 565 GS + VR+IAATN++L+ MV FR DLYYRLNV I LPPLR+R EDI LLA Sbjct: 269 GSFQRKIVSVRIIAATNKNLEAMVEQGGFRKDLYYRLNVVTIDLPPLRQRKEDIGLLAAH 328 Query: 566 FTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIV 625 F K A + +NI I LR L N WPGNVRELEN+IERA L + V Sbjct: 329 FLTKYAAQNNKNIRGIAPRALRLLENYSWPGNVRELENIIERATLFELTQEITPDSLPQV 388 Query: 626 LPEP----ETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRM 681 + EP + P + + IVR+L+ TN A++ LG+ R+TL M Sbjct: 389 VIEPCTVLDPSPFSMETTSLEAVSRRHIVRILEMTN---HNKTQASKLLGIDRSTLWRIM 445 Query: 682 KRLGID 687 RL ++ Sbjct: 446 NRLKLN 451 >UniRef50_Q2LRW3 Response regulator containing sigma 54 interaction domain n=3 Tax=Bacteria RepID=Q2LRW3_SYNAS Length = 457 Score = 521 bits (1343), Expect = e-146, Method: Composition-based stats. Identities = 155/435 (35%), Positives = 251/435 (57%), Gaps = 27/435 (6%) Query: 275 NLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLR 334 + R+L + + LP + G +L +K + V + + Sbjct: 28 EVQTVQSGEEAIRLLDEDLPGIVLLDIWLPGIDGMEVLKTIKSLHPKLPVVMMSGHGTIE 87 Query: 335 QIAERVAIA----VDNALAYQEIHRLKE------RLVDENLALTEQLNNVDSEFGEIIGR 384 + + ++ L+ ++I + RL +EN+ L +++N E+ G+ Sbjct: 88 TAVKATKLGAFDFIEKPLSLEKIILTLKHALDLSRLEEENVLLKQKINRDY----ELTGK 143 Query: 385 SEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 444 S + +++ + +VA +++ +LI+GE GTGKEL+ARAIH S R ++ MV++NCAA+P Sbjct: 144 SPPIIELMEMISIVAPTNAWILIMGENGTGKELVARAIHRQSKRADKPMVEVNCAAIPEE 203 Query: 445 LLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFER 504 L+ES+LFGHE+GAFTGA+ ++ G+F++A + ++FLDEV DM L+ Q K+LR+LQE++FER Sbjct: 204 LIESELFGHEKGAFTGATEKKRGKFDIAHEGTIFLDEVADMSLKAQAKILRILQEKKFER 263 Query: 505 LGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAK 564 +G NK+IQ DVR++AATN+DL+K + + FR DL+YRLNV P+ +PPLR R EDIPLLA+ Sbjct: 264 VGGNKVIQLDVRVLAATNKDLEKEMEEGRFRQDLFYRLNVIPLKVPPLRSRKEDIPLLAE 323 Query: 565 AFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSL-PD 623 F A + G +I + L L WPGNVREL+N IER ++T NV+ + P Sbjct: 324 RFLSDFALKEGEPGKTIQDDALALLMEHSWPGNVRELKNFIERLAIMTTSNVITVHDIPP 383 Query: 624 IVLPEPETPP---------AATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKR 674 + + P A + + + E Q I R L+E +G ++ A+ +GL+R Sbjct: 384 LPRDGHKVEPFREPGFELLAGSFREAKMDFEKQYISRKLREFDGNIS---KTAESIGLER 440 Query: 675 TTLLSRMKRLGIDKS 689 + L ++K G++ Sbjct: 441 SNLHKKIKAYGLESK 455 >UniRef50_B5Y7I9 Acetoacetate metabolism regulatory protein AtoC (Ornithine/argininedecarboxylase inhibitor) (Ornithine decarboxylase antizyme) n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y7I9_COPPD Length = 459 Score = 521 bits (1343), Expect = e-146, Method: Composition-based stats. Identities = 154/434 (35%), Positives = 218/434 (50%), Gaps = 14/434 (3%) Query: 256 DEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVL 315 L + V + + ++ D ++ + +P + G +L L Sbjct: 28 PSIRELVQTVLSQQSLEVVT---ASDGEEALKVSEAQVVDCALVDIRMPKVDGLAVLEQL 84 Query: 316 KLAQCEEKVFTTTNLNLLRQIAERVAIAVDNAL-AYQEIHRLKERLVDENLALTE----Q 370 L V T E + + + +I L E++ Sbjct: 85 VL--KNIPVIVITAYGTSDVTIEAMRRGAYDFITKPFDIDDLAEKVRKALDYSKTTEVLP 142 Query: 371 LNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNN 430 + ++G S AM V K + VA +D TVLI GE+GTGKEL++RAIH S RN Sbjct: 143 IKGSKETSSLMVGMSAAMQEVYKLIGRVASTDVTVLITGESGTGKELVSRAIHYNSPRNK 202 Query: 431 RRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQ 490 V +NCAA+P LLES+LFG+E+GAFTGA ++IG+FELA+ ++ LDE+GDM LQ Sbjct: 203 GPFVVVNCAAIPEDLLESELFGYEKGAFTGADERKIGKFELANHGTILLDEIGDMSPMLQ 262 Query: 491 PKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLP 550 K+LRVLQE ER+G + I DVR++AATN+DL+ +V FR DLY+RLNV I LP Sbjct: 263 AKILRVLQEHVIERIGGTRSIPVDVRVLAATNKDLQSLVKSGSFREDLYFRLNVVQIQLP 322 Query: 551 PLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVL 610 PLRER EDIPLLA F K A + + + E + L ++PGNVRELEN+I RAV Sbjct: 323 PLRERKEDIPLLADHFIKKYAAETSKEVTGVTPEVMAALMAYDYPGNVRELENIIARAVA 382 Query: 611 LTRGNVLQLSLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRL 670 L G VL L + + EP+ P + + E E + + + P+ A L Sbjct: 383 LCSGKVLTLDVLPPQVVEPK-PALRPLKEVLLEAERRAFRQAVAVAG---LDPQAVADLL 438 Query: 671 GLKRTTLLSRMKRL 684 + R+K Sbjct: 439 QVDLDYAKKRLKEW 452 >UniRef50_C4FI59 AAA family ATPase n=1 Tax=Sulfurihydrogenibium yellowstonense SS-5 RepID=C4FI59_9AQUI Length = 531 Score = 521 bits (1342), Expect = e-146, Method: Composition-based stats. Identities = 139/316 (43%), Positives = 200/316 (63%), Gaps = 6/316 (1%) Query: 372 NNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNR 431 S +I +S M VL + VA + + VL+ GE+GTGK ++A+ IHN S R ++ Sbjct: 220 QEAASNKSRLITKSSLMVYVLDIAKTVADTTANVLLEGESGTGKNVLAKYIHNQSSRRDK 279 Query: 432 RMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQP 491 VK+NCAA+P LLES+LFG+ +GAFTGA + G+ ELAD +LFLDE+G++P LQ Sbjct: 280 PFVKINCAAIPDNLLESELFGYVKGAFTGAVKDKPGKVELADGGTLFLDEIGELPTYLQS 339 Query: 492 KLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPP 551 KLL ++QE+EFERLG K + DVR+IAATN+DL ++V + +FR DLYYRL V I +P Sbjct: 340 KLLHLIQEKEFERLGDTKTKKVDVRIIAATNKDLSQLVKEGKFREDLYYRLKVISIKVPA 399 Query: 552 LRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLL 611 LRER EDIP L F +++ ++I I E +R L N ++PGN+RELEN+IERAV+L Sbjct: 400 LRERKEDIPFLINYFIDLYSKQYNKHIKGISPEAVRLLLNYDYPGNIRELENIIERAVIL 459 Query: 612 TRGNVLQL-SLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRL 670 +G +++ LPD ++ + + E Q I+RVL+ N AA+ L Sbjct: 460 AKGKFIEVSDLPDEIVYNTKILTQNDLDEEID--EKQKILRVLESVNW---NKSKAAKIL 514 Query: 671 GLKRTTLLSRMKRLGI 686 + R TL ++K+ G+ Sbjct: 515 NIDRVTLWRKLKKYGL 530 >UniRef50_A9F816 Protein kinase n=12 Tax=Bacteria RepID=A9F816_SORC5 Length = 1673 Score = 521 bits (1342), Expect = e-146, Method: Composition-based stats. Identities = 173/528 (32%), Positives = 265/528 (50%), Gaps = 37/528 (7%) Query: 190 LVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHR-------KNKLNIYSTHY 242 L+ + + S LD +E++ + ++L S K +L + Sbjct: 1156 LLEVNRRLSSTLDAEEVLRLAMDAAIELTGAERGFVILASPSPEPGGHAKGRLEVAVARN 1215 Query: 243 LDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCL 302 LD++ Q + + +RV + E +L D+ + G +++++ Sbjct: 1216 LDRERVGKSQLKFSHG--IAKRVVERGEAVLTVDALADERFHGNASV---HGLRLRSIVC 1270 Query: 303 LPLMSGDTMLGVLKLA-QCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLV 361 +P+ + +LG + L + + F + +LL A+++A+A+ N E+ L Sbjct: 1271 VPIRAHGAVLGAVYLDNRFQRGKFAEGDADLLGAFADQIAVALHNGRLMAELRDRTRALE 1330 Query: 362 DENLA------------------LTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDS 403 +E L + +F EI GRS M +VL E VA+SD Sbjct: 1331 EEQRRVAELMRSQADEIERLSHELERTRADARRDFPEIAGRSAPMRAVLALCERVAESDV 1390 Query: 404 TVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASA 463 TV + GE+GTGKEL+ARAIH R + V +NCAA+P LLES+LFGH +GAFTGA Sbjct: 1391 TVTVTGESGTGKELVARAIHAGGPRRDGPFVAVNCAALPEALLESELFGHVKGAFTGAVR 1450 Query: 464 QRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQT-DVRLIAATN 522 G F A +LFLDE+G++PL +Q KLLR LQE+ +GS++ + DVR++ ATN Sbjct: 1451 DHGGLFLSARGGTLFLDELGEVPLGVQAKLLRALQERSIRPVGSDRSVSVADVRVVCATN 1510 Query: 523 RDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIP 582 RDL+ VA FR DLYYR++V I LPPLR+RPEDIP +A+A K+A R GR + Sbjct: 1511 RDLRDEVARGRFREDLYYRVSVIEIRLPPLRDRPEDIPAIAQAIVEKLAARQGRPAFRLS 1570 Query: 583 AETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEG 642 LR LS+ WPGNVR+LENV+ RA +L+ G + + + P + Sbjct: 1571 RGALRRLSSYGWPGNVRQLENVLSRACVLSPGPEIGAADIQLPAAAPAPRGRSRAEHQGA 1630 Query: 643 EDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSA 690 E+E I L + V+ ++ LG+ R TL ++ R G+ + Sbjct: 1631 EEER--IRAALDLSRWNVS---EVSRSLGIPRMTLYRKLARYGLLRKE 1673 >UniRef50_B2S3B3 Response regulatory protein n=28 Tax=Spirochaetales RepID=B2S3B3_TREPS Length = 458 Score = 520 bits (1341), Expect = e-146, Method: Composition-based stats. Identities = 155/444 (34%), Positives = 236/444 (53%), Gaps = 16/444 (3%) Query: 253 SEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTML 312 +D+ + E + + E + +D + + I T +P MSG+ +L Sbjct: 6 LVLDDEKNIREGLQMALEDEGYEVFTAEDGNTGVEIALKGDIDLIITDLKMPRMSGELVL 65 Query: 313 GVLKLAQCEEKVFTTTNLNLLRQIAERVAIA----VDNALAYQEIHRLKER------LVD 362 + + + T + E + + L + L R L+ Sbjct: 66 QHVHAVLPDIPIIILTGHGTVENAVEAMHKGAYDFLTKPLDLNRLSLLVRRALQNRELIV 125 Query: 363 ENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAI 422 ++ L +Q+ + F I+G S AM V V+ A S ++VLI GE+G GKELIA AI Sbjct: 126 QHRELIKQI-GNRTSFENIVGESPAMNKVFDMVKKAAASKASVLITGESGVGKELIANAI 184 Query: 423 HNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEV 482 HNLS R + ++K++CA+ G+LES+LFGHERGAFTGA + GRFELA + S+FLDE+ Sbjct: 185 HNLSPRKAKPLIKVHCASFAEGVLESELFGHERGAFTGAVNRMKGRFELAHEGSMFLDEI 244 Query: 483 GDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRL 542 G++ + +Q KLLRVLQE+ FER+G + I+ DVR+I+ATNR+L + + FR DLYYRL Sbjct: 245 GEVSMAVQIKLLRVLQERSFERVGGRETIKVDVRVISATNRNLLEEIKRNLFREDLYYRL 304 Query: 543 NVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELE 602 NV IH+P LRER ED+PLL F +IA G+ I SI + L +WPGN+R+L Sbjct: 305 NVVHIHVPALRERKEDLPLLIATFLKEIAEENGKKITSIDPQAQSALHAYDWPGNIRQLR 364 Query: 603 NVIERAVLLTRGNVLQLSLPDIVLPEPETPPA--ATVVALEGEDEYQLIVRVLKETNGVV 660 N IE AV+++ G V+ + + + + + E ++I++ L+ G Sbjct: 365 NCIESAVIMSSGPVIHIEDLSEPIRSLGETSSIRIPIGVSMEDAEKEIILQTLEAQKG-- 422 Query: 661 AGPKGAAQRLGLKRTTLLSRMKRL 684 A LG+ R TL ++ + Sbjct: 423 -NKSKTADVLGIGRKTLYLKLDQY 445 >UniRef50_P54931 Nif-specific regulatory protein n=9 Tax=Alphaproteobacteria RepID=NIFA_RHIEC Length = 584 Score = 520 bits (1341), Expect = e-146, Method: Composition-based stats. Identities = 159/569 (27%), Positives = 265/569 (46%), Gaps = 64/569 (11%) Query: 180 LCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYS 239 + + + I+ + + ++ ++ V + + I +IV+ + I + Sbjct: 23 MRQAGTQRSGIYEISKVLTAPARLEITLANVVNVLSSFLQIRCGAIVVLDAE-GQPEIAA 81 Query: 240 THYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQT 299 T + + + + + + + + L++ + +L E + G + Sbjct: 82 TGDIPPSSQSAARGVIP--KAVIDHIATTGMPLIVKDVSKSELFQAEPQPPWSSGTVPIS 139 Query: 300 LCLLPLMSGDTMLGVLKLAQCE---EKVFTTTNLNLLRQIAERVAIAV--DNALAYQEIH 354 +P+ + + +LG + + + ++ L +A V+ + L + Sbjct: 140 FIGVPVKADNKILGTISIDRVRNDAAPFPADEDVRFLTMVANLVSRTIRLHRFLNLEGRR 199 Query: 355 RLKERLVDENLALTEQLNNVDSEF---GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGET 411 + E+ E + ++ IIG S A+ V++ V +VA+++STVL+ GE+ Sbjct: 200 PIGEQERPEKPIIAQRGAPGRHPPVKIDGIIGDSPALQQVVETVSVVARTNSTVLLRGES 259 Query: 412 GTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFEL 471 GTGKE A+AIH LS R N+ VK+NCAA+P G+LES+LFGHE+GAFTGA AQR GRFEL Sbjct: 260 GTGKEFFAQAIHELSPRKNKPFVKLNCAALPEGVLESELFGHEKGAFTGAIAQRAGRFEL 319 Query: 472 ADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVAD 531 A+ +L LDE+G++ Q KLLRVLQE E ER+G K + DVRLI ATN++L+ VA+ Sbjct: 320 ANGGTLLLDEIGEISPAFQAKLLRVLQEGELERVGGTKTLAVDVRLICATNKNLEMAVAN 379 Query: 532 REFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSN 591 EFR+DLYYR++V PI LPPLRERP DIP LA A + + R + + + + +S Sbjct: 380 AEFRADLYYRISVVPIVLPPLRERPGDIPRLANALLDRFNKENQREL-TFSSSAIEVMSQ 438 Query: 592 MEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPE----------------------- 628 +PGNVRELEN + R L R + + S + Sbjct: 439 CYFPGNVRELENCVRRTATLARSSSIVSSDFACKNSQCLSSLLWKTDGSPGGITVDGHAR 498 Query: 629 -----PETPPAATVVALEGED---------------------EYQLIVRVLKETNGVVAG 662 +P + + E + ++ +++ V Sbjct: 499 SNVMPTSSPRSGGSIGASDEVSSVKACDPHGSGCPAMESRLTQRDRLIEAMEKAGWV--- 555 Query: 663 PKGAAQRLGLKRTTLLSRMKRLGIDKSAL 691 AA+ LGL + +++ I+ L Sbjct: 556 QAKAARILGLTPRQVGYALRQHRIEVKKL 584 Score = 42.5 bits (99), Expect = 0.051, Method: Composition-based stats. Identities = 52/380 (13%), Positives = 116/380 (30%), Gaps = 38/380 (10%) Query: 1 MSYTPMSDLGQQ--GLFDITRTLLQQPDLASLCEALSQLVKRSALADNAAIVLWQAQTQR 58 + PM G Q G+++I++ L L + ++ AIV+ A+ Q Sbjct: 18 LPAGPMRQAGTQRSGIYEISKVLTAPARLEITLANVVNVLSSFLQIRCGAIVVLDAEGQ- 76 Query: 59 ASYYASREKDTPIKYEDETVLAHGPVRSILSRPDTLHCSYEEFCETWPQLDAGGLYPKFG 118 A+ + + V+ + I + L E + Sbjct: 77 PEIAATGDIPPSSQSAARGVIPKAVIDHIATTGMPLIVKDVSKSELFQAEPQPPWSSGTV 136 Query: 119 --HYCLMPLAAEGHIFGGCEFIRYDDRP---WSEKEFNRLQTFTQIVSVVTEQIQSRVVN 173 + +P+ A+ I G R + ++++ L +VS ++ + Sbjct: 137 PISFIGVPVKADNKILGTISIDRVRNDAAPFPADEDVRFLTMVANLVSRTI-RLHRFLNL 195 Query: 174 NVDYELLCRERDNFRIL-----------VAITNAVLSRLDMDELVSEVAKEIHYYFDIDD 222 + +ER I+ V I + + ++V V+ + Sbjct: 196 EGRRPIGEQERPEKPIIAQRGAPGRHPPVKIDGIIGDSPALQQVVETVSVVART-----N 250 Query: 223 ISIVLRSHRKNKLNIYSTHYLDKQHPAHEQSEVDEAGTLTERVFKSK---------EMLL 273 +++LR ++ + ++ L E V +S+ + Sbjct: 251 STVLLRGESGTGKEFFAQAIHELSPRKNKPFVKLNCAALPEGVLESELFGHEKGAFTGAI 310 Query: 274 INLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLL 333 R +LA +L D G +L +L + ++ L+ Sbjct: 311 AQRAGRFELANGGTLLLDEIGEISPAFQA----KLLRVLQEGELERVGGTKTLAVDVRLI 366 Query: 334 RQIAERVAIAVDNALAYQEI 353 + + +AV NA ++ Sbjct: 367 CATNKNLEMAVANAEFRADL 386 >UniRef50_B8IZ98 Transcriptional regulator, NifA subfamily, Fis Family n=2 Tax=Desulfovibrio RepID=B8IZ98_DESDA Length = 554 Score = 520 bits (1340), Expect = e-146, Method: Composition-based stats. Identities = 174/532 (32%), Positives = 260/532 (48%), Gaps = 43/532 (8%) Query: 195 NAVLSRLDMDELVSEVAKEIHYYFDIDD----ISIVLRSHRKNK---------------L 235 +L L + V +V + I L L Sbjct: 10 KTLLLELAQQQAVEDVLSLAVKSLGTARDSALVRIWLVEADDGCPSCADKGVCAGRGRCL 69 Query: 236 NIYSTHY-------LDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERM 288 ++ +++ L Q + + L ++ E ++ Sbjct: 70 HLKASYGQSRVDGRLWTQTEPSGFYRFPLGHRKVGAIAMTNRPLEVSHIEGNEDWIAAPE 129 Query: 289 LFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNAL 348 G I + PL+ LGV+ + + +LR +A+ +A A+ NA Sbjct: 130 WIAAEG--IVSFAGQPLVCRGETLGVIAFFSRDT--LAQGAMEMLRMVADHIAYAITNAR 185 Query: 349 AYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLIL 408 ++ + +R EN L E+L +F IIG+S A+ ++ +Q+ +V+++++TVLI Sbjct: 186 LFEITRSITQRRELENAHLREELYEAR-QFTGIIGKSAAIKAIREQILVVSETEATVLIQ 244 Query: 409 GETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGR 468 G +GTGKEL+A +H S R N +K+NCAA+P L ES+ FGH +GAFTGA R+G Sbjct: 245 GASGTGKELVAHELHKNSKRKNNPFIKINCAAIPHHLFESEFFGHVKGAFTGAIHDRMGF 304 Query: 469 FELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKM 528 F+LAD +LFLDE+ ++PLELQ KLLRVLQE EF R+G K TD+RLIAATN+DLK Sbjct: 305 FQLADGGTLFLDEIAEIPLELQGKLLRVLQEGEFRRVGEEKNRHTDIRLIAATNKDLKAA 364 Query: 529 VADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRT 588 + R FR DLYYRL VFP+ +P L+ER EDIPLL + F R+ GR + +P + Sbjct: 365 IRKRTFRDDLYYRLQVFPLTVPTLKEREEDIPLLVRHFIRIFCRKNGRRVFDVPEAQMNR 424 Query: 589 LSNMEWPGNVRELENVIERAVL------------LTRGNVLQLSLPDIVLPEPETPPAAT 636 L +WPGN+REL+N +ER V+ L + L P Sbjct: 425 LRQYDWPGNIRELQNFVERMVITGRPEQALAYLALCEAASPEAEEAAPELCASFGIPKIL 484 Query: 637 VVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDK 688 + E + L+ TN ++ G +GAA LG+K TTL+SR+KR + + Sbjct: 485 TEKQMRQLEKDNMKAALERTNWLIYGNRGAAALLGMKPTTLISRLKRFDLYR 536 >UniRef50_B8GQ33 NifA subfamily transcriptional regulator n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GQ33_THISH Length = 547 Score = 520 bits (1339), Expect = e-146, Method: Composition-based stats. Identities = 167/539 (30%), Positives = 263/539 (48%), Gaps = 43/539 (7%) Query: 184 RDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYL 243 + ++ I + LD V + + + ++ ++ L + ++ L Sbjct: 13 KQQLSVIQEIAKLLDRPLDPPRTVQSILRLLSQMLGLNCGRVLAPDSSGLVLEVKYSYGL 72 Query: 244 DKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLL 303 A V +T V ++ + L+ +++ L + + Sbjct: 73 THARLAQGAFSVGYHEGVTGFVMRTGTIGLVTDIDQEPLYLQRITERSGGSHSPIAFIAV 132 Query: 304 PLMSGDTMLGVLKLAQCE-EKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVD 362 P++ T +GVL + + +++ +LR A + + Q +++ E L+ Sbjct: 133 PILESGTPIGVLSVQREGIRHRAFDSDIAVLRVAASAIGQVM---RIRQFLNQQTEHLMQ 189 Query: 363 ENLALTEQLNNV----DSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELI 418 EN +L + S IIG SE++ +KQ VA S++ V++LGE+GTGKE Sbjct: 190 ENQSLKNSIVMEGMLQKSLSHGIIGSSESLMKAVKQCMQVAHSEAPVMLLGESGTGKEKF 249 Query: 419 ARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLF 478 AR IH S R+ V +NCAA+P LLE++LFG+E+G+FTGA+ + G+ LAD +LF Sbjct: 250 ARMIHQQSDRSEHPFVCINCAAIPPDLLEAELFGYEKGSFTGANGAKKGKIMLADGGTLF 309 Query: 479 LDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDL 538 LDE+GDMPL+LQ KLLRVLQE++ + +GS + + + RLI AT+ ++++ V FR DL Sbjct: 310 LDEIGDMPLQLQAKLLRVLQERQVDPIGSTRGVPVNFRLITATHVNMQEHVNAGHFRLDL 369 Query: 539 YYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNV 598 +YRLNV P++LPPLR R EDI LA F ++ R RNI ++ L L WPGNV Sbjct: 370 FYRLNVVPVYLPPLRTRHEDIRPLALHFLNELNHRYRRNI-TLHPAALHVLERYSWPGNV 428 Query: 599 RELENVIERAVLLTRGNVLQLSLPDIVLPE------PETPPAATVVALEGEDEY------ 646 R+L+NV+ERA+L+ V+ +L E P+ P V A E E Sbjct: 429 RQLQNVLERAMLMVEDEVIDQEQMTRILAEQSAVKLPKQGPDRPVEAGMAE-ERGVRGEA 487 Query: 647 ------------------QLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 Q I L++T G GAA+ L L L RM++LG+ Sbjct: 488 FLTGAMPRAYQWVHQDDAQRIRNALEQTRG---NQAGAARLLNLTTRQLRYRMEKLGLR 543 >UniRef50_Q3ABV5 Sigma-54 dependent transcriptional regulator n=3 Tax=Bacteria RepID=Q3ABV5_CARHZ Length = 732 Score = 519 bits (1338), Expect = e-145, Method: Composition-based stats. Identities = 155/358 (43%), Positives = 204/358 (56%), Gaps = 14/358 (3%) Query: 341 AIAVDNALAYQE--IHRLKERLVDENLALT---EQLNNVDSEFGEIIGRSEAMYSVLKQV 395 AIAV LA + + L ++ E E N I G++E + V K + Sbjct: 377 AIAVYQGLAEIDMCLPFLLKKTRGEAEFYRNKYEMENRKKYYLDGITGQTEKIIEVKKLI 436 Query: 396 EMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHER 455 E A SD VLI GE+G GKE+ AR IH LS R ++ V +NCAA+P LLES+LFG+E Sbjct: 437 EKAAMSDGNVLIQGESGVGKEIAARTIHYLSERADKPFVAINCAAIPENLLESELFGYEE 496 Query: 456 GAFTGASAQ-RIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTD 514 GAFTGA + G+ E AD +LFLDE+GDMPL +Q KLLR +Q +EFER+GSN + D Sbjct: 497 GAFTGAKRGGKAGKIEQADGGTLFLDEIGDMPLSMQVKLLRFIQNREFERIGSNTPRKVD 556 Query: 515 VRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRL 574 +R+IAATN+ L K+V + FR DLYYRLNVF I++PPLRER +DIPLL F + R Sbjct: 557 IRIIAATNQPLAKLVKEGRFRMDLYYRLNVFNINIPPLRERRDDIPLLVNRFMNEFCERR 616 Query: 575 GRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPA 634 + +E + L N WPGN+REL+NVIERA L GN+++ L Sbjct: 617 KMAPKIVTSEAMNILMNYSWPGNIRELQNVIERAYYLAEGNLIKPEHLPAQLTSKALSGE 676 Query: 635 A-----TVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 T E E +LI+ LK TN A+ LG+ R TL ++K GI+ Sbjct: 677 RITKITTFKEAVAEVEKKLIIEGLKATN---YNKLACAKLLGIPRATLYQKIKEYGIE 731 >UniRef50_UPI00016C585F ornithine decarboxylase inhibitor-putative sigma54 transciptional regulator n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C585F Length = 643 Score = 519 bits (1338), Expect = e-145, Method: Composition-based stats. Identities = 162/484 (33%), Positives = 242/484 (50%), Gaps = 27/484 (5%) Query: 210 VAKEIHYYFDIDD-ISIVLRSHRKNKLNIYSTHYLDKQHPAHEQSEVDEAGTLTERVFKS 268 A + + + L+ R+ +L + + + ++ V Sbjct: 182 AADAVFRATPAEVVAVLALKEGRELELVTHRVRN------GGPATYHKVSQFVSSEVLSD 235 Query: 269 KEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTT 328 ++ +L D + + + ++ +L P+M+ D +LG+L L + Sbjct: 236 RQAILAENVATDRMLKDRDSIAEL---KVASLICAPIMADDKVLGLLHLYRTIGHAPLNA 292 Query: 329 NLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAM 388 + R V + + Q L EN +L QL EI+G S + Sbjct: 293 DDLEFTLAVARHLGTVWHRFSRQ------ASLSAENRSLRSQLKIES----EIVGESAVL 342 Query: 389 YSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLES 448 + QV VA++ +TVL+ GE+G+GKEL+ARAIH S R + +NCAA+ LLES Sbjct: 343 QQIESQVVRVAETRATVLVRGESGSGKELVARAIHLHSPRREGAFICLNCAALTETLLES 402 Query: 449 DLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSN 508 +LFGHE+GAFTGA+ + +G+FE AD ++FLDE+G+M L Q K LRVL+ FER+G N Sbjct: 403 ELFGHEKGAFTGATERMVGKFEAADNGTIFLDEIGEMALSTQAKFLRVLEGHPFERVGGN 462 Query: 509 KIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTF 568 I+ DVR++AATNR L++ V FR DL+YRL V + +PPLR+R +D+PLLA+ F Sbjct: 463 TAIKVDVRVVAATNRPLEEAVRAGTFRRDLFYRLQVVQLDVPPLRDRLDDVPLLAEHFLK 522 Query: 569 KIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPE 628 + AR R E L L WPGNVREL NVIERAV L G L + + + Sbjct: 523 RFARETARKFKGFTPEALDKLRAYRWPGNVRELRNVIERAVALGNGPQLDAADIWLSGLD 582 Query: 629 PETPPAATV----VALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRL 684 P + E E + I+ LK T+ AA LG++R+TL ++ R Sbjct: 583 VGAPVVSAALVYKPETIEEVEKRHILETLKHTDW---NKSRAATILGIERSTLDRKIDRY 639 Query: 685 GIDK 688 G+ K Sbjct: 640 GLTK 643 >UniRef50_Q897M6 Transcriptional regulatory protein n=1 Tax=Clostridium tetani RepID=Q897M6_CLOTE Length = 567 Score = 519 bits (1336), Expect = e-145, Method: Composition-based stats. Identities = 167/600 (27%), Positives = 278/600 (46%), Gaps = 60/600 (10%) Query: 109 DAGGLYPKFGHYCLMPLAAEGHI---FGGCEFIRYDDRP---WSEKEFNRLQTF------ 156 ++ K YC + I G +F+ + R E +N +Q Sbjct: 4 RRAFMFSKVNKYCDYSIRVGAIIINNLGEIQFMSDECRKILCAREYSYNHIQQLIPCFNM 63 Query: 157 TQIVSVVTEQI--QSRVVNNVDYELLCRE--RDNFRILVAITNAVLSRLDMDELVSEVAK 212 +++ T++ + N++ L E ++ L+ N + + + + K Sbjct: 64 KDLINSSTKRKIKLNNKKLNMEVISLKEECMKEFLITLID-ANVIDVMYEELKAKEKNLK 122 Query: 213 EIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKEML 272 + + ++ +V+ + E +TE + ++ + Sbjct: 123 ILSFILELAYDGLVVIDKYG----YITMINKTYADFLGVDQERSIGKHVTEVIESTRMHI 178 Query: 273 LINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNL 332 + E + +P++ ++ V Sbjct: 179 VAK------TGIAETAQLQKVKGKYMIANRIPVIENGELVAVAG---------------- 216 Query: 333 LRQIAERVAIAVDNALAYQEIHRLKERLVDENLALT---EQLNNVDSEFGEIIGRSEAMY 389 + N +++ + +E ++ N+ F IIG+S+ + Sbjct: 217 --------KVLFKNIKELDLLYKKIRNIENEYKKYKGQFDESNSASYSFDNIIGKSDKIN 268 Query: 390 SVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESD 449 + A+++S VLI GE+GTGKEL A AIH S R +K+NCAA+P LLES+ Sbjct: 269 KTKDLAKKAAKTNSNVLIRGESGTGKELFAHAIHMESERVYGNFIKLNCAAIPRDLLESE 328 Query: 450 LFGHERGAFTGASA-QRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSN 508 LFG+E GAFTGA +IG+FELAD ++FLDE+GDMPL +Q KLLRVLQE+E ER+G+ Sbjct: 329 LFGYEGGAFTGAKKEGKIGKFELADGGTIFLDEIGDMPLHMQAKLLRVLQEREVERIGAT 388 Query: 509 KIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTF 568 + + DVR+I+ATNRDL+KM+ + EFR DLYYRLNV +++PPLRER EDI +L++ Sbjct: 389 RSKKIDVRVISATNRDLEKMIKEGEFREDLYYRLNVVTVNIPPLRERREDIKILSEYLLE 448 Query: 569 KIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTR-GNVLQL-SLPDIVL 626 KI+++LG+ S E + L N +W G VR+LEN+IERAV L +++ P ++ Sbjct: 449 KISKKLGKKTKSFSKEAMSCLMNYKWEGGVRQLENIIERAVNLVEHNEMIEPKHFPGNIV 508 Query: 627 PEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 + + L + E +I+ L N AA++L + RT+L ++ + I Sbjct: 509 SNKYIVEDSDLNKLINQVEKDIILETLIYCNW---NKTLAAKKLNISRTSLYEKIAKHNI 565 >UniRef50_UPI00016C4DD7 sigma-54 dependent transcriptional regulator/response regulator n=2 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C4DD7 Length = 475 Score = 519 bits (1336), Expect = e-145, Method: Composition-based stats. Identities = 169/444 (38%), Positives = 237/444 (53%), Gaps = 31/444 (6%) Query: 274 INLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLL 333 + + +D A ML + + T +P + G ++ ++ + V TT + Sbjct: 33 LEVDTAEDGAAGLAMLRAKPYSLVITDLRMPRVGGMKLIETIQAEKIPVTVIVTTGNGNI 92 Query: 334 RQIAERVAIAVDNALA----------YQEIHRLKERLVDENLALTEQLNNVDSEFGEIIG 383 + E + + V + L + L DE AL +L F ++ Sbjct: 93 KDAVEAMRMGVYDFLTKPPDPQHLQIIVQRALRDRALQDEVAALRRELGE-RHTFQNVLS 151 Query: 384 RSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS-GRNNRRMVKMNCAAMP 442 RS M + + + VA + STVLI GETGTGKE IARAIH S V +NC A+ Sbjct: 152 RSPKMVDLFELIGHVAGTASTVLIRGETGTGKEQIARAIHQASANYRTGEFVAVNCGALN 211 Query: 443 AGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEF 502 LLES+LFGHE+G++TGA +RIGRFELA K +LFLDE+GD+P+ +Q KLLRVLQE+ F Sbjct: 212 ENLLESELFGHEKGSYTGADRKRIGRFELAHKGTLFLDEIGDVPMSMQVKLLRVLQERRF 271 Query: 503 ERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLL 562 ER+G + I+ DVR++AAT++D++K+V D +FR DLYYRLNV I +PPLRER EDIP+L Sbjct: 272 ERVGGAEPIEIDVRVVAATHQDMEKLVKDGKFREDLYYRLNVVRIDIPPLRERTEDIPVL 331 Query: 563 AKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVL-QLSL 621 F K R+G+ +I E L L+ WPGNVR+LEN IERA + R V+ L Sbjct: 332 VSHFCQKF-VRVGQKPPTISPEALDLLTKCPWPGNVRQLENAIERACVTARDGVIRTKDL 390 Query: 622 PDIVLPEPETPPAA--------------TVVALEGEDEYQLIVRVLKETNGVVAGPKGAA 667 P V PE+ A + L E + I R LK + G V A Sbjct: 391 PPEVGRRPESSAAGKHPFHVDLNRKLPDQLSELTAAFEERYIRRALKRSRGHV---GKCA 447 Query: 668 QRLGLKRTTLLSRMKRLGIDKSAL 691 + GL R ++ ++ + IDK Sbjct: 448 KITGLSRRSITDKIAQYKIDKEQF 471 >UniRef50_B4D0Z8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D0Z8_9BACT Length = 466 Score = 518 bits (1335), Expect = e-145, Method: Composition-based stats. Identities = 148/426 (34%), Positives = 209/426 (49%), Gaps = 24/426 (5%) Query: 277 HERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQI 336 L + T + + G +L + + V T + Sbjct: 29 VAYASGQKALESLAVHAPQLVITDLRMDKVGGLDILRECREVLPQTPVILITAYKTVETA 88 Query: 337 AERVAIA----VDNALAYQEIHRLKER------LVDENLALTEQLNNVDSEFGEIIGRSE 386 E + + + E+ +R LV EN L Q+ F IIG S Sbjct: 89 LEAMKLGAYDYITKPFKVDELQLTIQRALDNQSLVRENRNLR-QIVKEKYRFENIIGTST 147 Query: 387 AMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLL 446 M + + VA +DST+LI GE+GTGKEL+ARA+H S R ++ V +NC+A+P LL Sbjct: 148 KMQEIYNLIAKVADTDSTILIQGESGTGKELVARALHFNSTRQHQPFVAINCSALPENLL 207 Query: 447 ESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLG 506 ES+LFGH++G+FTGA +IG FE A+ ++FLDEV M LQ KLLRVLQE++ R+G Sbjct: 208 ESELFGHKKGSFTGAVQDKIGLFEEAEGGTIFLDEVNSMAQPLQTKLLRVLQERQIRRVG 267 Query: 507 SNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAF 566 K + +VR++AATN L + FR DLYYRL V P+ +P LRERP+DIPLL F Sbjct: 268 DTKSVPINVRVLAATNEALGDKIKGGNFREDLYYRLAVIPVEMPALRERPDDIPLLVSHF 327 Query: 567 TFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVL-QLSLPDIV 625 K A + G I + + L+ WPGNVRELEN +ERA L ++ LP V Sbjct: 328 LQKNAAQTGTEAKKIDPKAIEMLAKYRWPGNVRELENAVERACALCDDALIRTTDLPPQV 387 Query: 626 LPEPETPP---------AATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTT 676 + PP T+ E E + I +K + AA+ LG+ T Sbjct: 388 IRHATAPPVEHSGTLPVGQTLDEYIREQERRYIEETIKFNGNS---REKAAKMLGISMAT 444 Query: 677 LLSRMK 682 L +++ Sbjct: 445 LYRKLE 450 >UniRef50_D0LLW1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LLW1_HALO1 Length = 501 Score = 518 bits (1335), Expect = e-145, Method: Composition-based stats. Identities = 167/466 (35%), Positives = 236/466 (50%), Gaps = 29/466 (6%) Query: 241 HYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTL 300 P+ VD+ + + + K + + + D A +L + T Sbjct: 7 RGQQLWDPSKVVLVVDDESGIVDSLTKIFQREGLRVLGASDGAEGLELLRKHRVGVLLTD 66 Query: 301 CLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNAL----------AY 350 ++P +G +L K E +V T + + + + + Sbjct: 67 LMMPHTTGMDLLKAAKTVAPETEVVLMTAYGTVETAVQAMKEGAYDFVTKPLKRAHVVRI 126 Query: 351 QEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGE 410 + K+ LV EN L QL S +IG S A + V A SD+TVL+LGE Sbjct: 127 VKNALEKQSLVVENRVLRAQLAEQRSR--AVIGSSLAWRRTMDIVHQAAPSDATVLLLGE 184 Query: 411 TGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFE 470 +GTGKEL+AR++H S R ++ + +NCAA+P +LE +LFG+E+GAFTGA++ R GRFE Sbjct: 185 SGTGKELLARSLHEGSARADKPFIAINCAAIPESILEGELFGYEKGAFTGATSSREGRFE 244 Query: 471 LADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSN-KIIQTDVRLIAATNRDLKKMV 529 A +LFLDEVG+MP +Q KLLRVLQE E ERLG + + D+RLIAATN +L K V Sbjct: 245 AASGGTLFLDEVGEMPRHVQVKLLRVLQEGEIERLGGSGRTRPIDIRLIAATNVELAKAV 304 Query: 530 ADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTL 589 + FR DLYYRLNV I +PPLRER +DIPLL + F A + G+ + + L L Sbjct: 305 QEGRFREDLYYRLNVISIAVPPLRERRDDIPLLVQHFLQVYADKNGKFMAGCTQDALDRL 364 Query: 590 SNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAA-------------T 636 WPGNVRELEN +ERAV+L+RG VL + + E A Sbjct: 365 CRYAWPGNVRELENAVERAVVLSRGEVLDEAALPFEVRSGEGALAEAAGAGDPGGALRFA 424 Query: 637 VVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMK 682 V E E +I L+ T G + AA+ LG+ T+ R++ Sbjct: 425 VGTPLAEIEMAVIHETLRHTKG---DKRLAAKLLGIATRTIYRRLE 467 >UniRef50_C1ZGY0 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZGY0_PLALI Length = 675 Score = 518 bits (1335), Expect = e-145, Method: Composition-based stats. Identities = 164/523 (31%), Positives = 262/523 (50%), Gaps = 34/523 (6%) Query: 186 NFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHR-------KNKLNIY 238 L + + S L V + + +I+L S ++L++ Sbjct: 166 ELSRLYRLALEMGSATTAQGLSEIVLEGLLNASSATIGAILLMSSSLAKNSGGNDQLSVV 225 Query: 239 STHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQ 298 + + Q + +L++ V K +E +L DD L + Q Sbjct: 226 AYRAQNHQPYH------PVSDSLSQIVLKDQEAVLARDISSDDRFLDRDSLGEIEA---Q 276 Query: 299 TLCLLPLMSGDTMLGVLKLAQCEEKVFTT-TNLNLLRQIAERVAIAVDNALAYQEIHRLK 357 ++ P+ + + + G++ L + +L +A+++A ++ +++ Sbjct: 277 SVICAPVRTAEKVYGLIHLYSTDNVSQLEVDDLEFTLAVADQMAAGLEQLQRVEKLQAGL 336 Query: 358 ERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKEL 417 +R EN L EQL + ++IG S AM + ++ +A +D+T LI GE+G+GKEL Sbjct: 337 QRAEVENQTLREQLRSEM----DLIGESPAMQQLKNRIARIAPTDATALIRGESGSGKEL 392 Query: 418 IARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSL 477 IARAIH S R + MNCAA+ LLES+LFGHE+G+FTGA +++G+FE A + ++ Sbjct: 393 IARAIHLHSNRRGGPFITMNCAALSESLLESELFGHEKGSFTGAVGRKLGKFEQAHQGTI 452 Query: 478 FLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSD 537 FLDEVG+M +Q K LRVL+ FER+G + DVR++AATNRDL+K V++ FR D Sbjct: 453 FLDEVGEMSPGVQAKFLRVLEGHPFERVGGGDPVHADVRVVAATNRDLEKAVSEGTFRQD 512 Query: 538 LYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGN 597 LY+RL V + + PLR R DIPLLA F + AR++ RN+ ++ L +WPGN Sbjct: 513 LYFRLQVVELVVEPLRRRKLDIPLLANYFLNRFARKMARNMVGFTPGAMQALIEYDWPGN 572 Query: 598 VRELENVIERAVLLTRGNVL---QLSLPDIVLPEPETPPAATVVA-------LEGEDEYQ 647 VREL++ IERAV+L + L L + P + E Q Sbjct: 573 VRELQHTIERAVILCPHEAVGQADLHLSALGTTGKSVEPTRDISTRQTFEALPLEIVEQQ 632 Query: 648 LIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSA 690 I+ L+ T AAQ LG++R+TL ++KR +++ Sbjct: 633 HILATLEWTGW---NKSQAAQILGIERSTLDRKLKRYDVERPR 672 >UniRef50_B4ULZ7 Transcriptional regulator, NifA, Fis Family n=2 Tax=Anaeromyxobacter RepID=B4ULZ7_ANASK Length = 535 Score = 518 bits (1335), Expect = e-145, Method: Composition-based stats. Identities = 159/546 (29%), Positives = 249/546 (45%), Gaps = 49/546 (8%) Query: 181 CRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYST 240 R L I + D+++ + + Y +++ ++ L ++ I + Sbjct: 4 RRAELEAETLYEIGKVLSLSTDLNKAFTSALNLLALYLGMENGTLSLFDPVTGEVFIEAA 63 Query: 241 HYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTL 300 + + + E L R+F + + I R+ + + + Sbjct: 64 PEMRDEERILGRFRPGEG--LVGRIFANGMPVAIPDIAREPVFLNRTGSWRDLERDPRAF 121 Query: 301 CLLPLMSGDTMLGVLKLAQC--EEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKE 358 +P+ G +LGVL + + + ++ LL +A + V ++ + Sbjct: 122 VGVPVQDGRAVLGVLTVDRPHRGGPLSLGRDVRLLTAVAHLMGARVR----LMQLESPQR 177 Query: 359 RLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELI 418 R + + +L F ++G + M VL+ V VA+S +TVL+ GE+GTGKEL Sbjct: 178 RAAQDLPPVAPELER----FPGVVGHGQRMREVLRLVSRVARSRATVLLRGESGTGKELF 233 Query: 419 ARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLF 478 A A+H S R R V +NCAA+P L+ES+LFGHE+GAFTGA+A R GRFE AD +LF Sbjct: 234 AHALHEASPRAERPFVAVNCAALPEALVESELFGHEKGAFTGAAAARPGRFEQADGGTLF 293 Query: 479 LDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDL 538 LDEVG++ Q KLLR LQE++FER+G + + DVRL+AATNRDL++MV FR DL Sbjct: 294 LDEVGELSPGAQAKLLRALQERQFERIGGRRTVTVDVRLVAATNRDLEEMVRAGTFRLDL 353 Query: 539 YYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNV 598 Y+RL+V + LPPLR+RPED+ LA+ F +A GR S+ L L GN Sbjct: 354 YHRLSVVTLELPPLRDRPEDLAALAQHFLAALAEEHGRPA-SLGPGVLEVLRACRLSGNA 412 Query: 599 RELENVIERAVLLTRGNVLQLSLPDIVLPEPET--------------------------- 631 R+L N +ERA++ + G+ L Sbjct: 413 RQLRNCLERALVSSTGDALGRDDFPCARAGGVPCMLERVLEPAAPRAAAPAPLPLPPPAS 472 Query: 632 ------PPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLG 685 P A + ++ L+ V AA+ LG+ + R+++ G Sbjct: 473 PAAPPAPGPAGAAPGTEAADRARVLAALERCGYV---QAKAARLLGMTYRQVAYRVRKYG 529 Query: 686 IDKSAL 691 I L Sbjct: 530 IAMERL 535 >UniRef50_A1AUC3 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Desulfuromonadales RepID=A1AUC3_PELPD Length = 465 Score = 517 bits (1333), Expect = e-145, Method: Composition-based stats. Identities = 147/432 (34%), Positives = 230/432 (53%), Gaps = 20/432 (4%) Query: 275 NLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLR 334 ++ + + L + I T + SG +L + ++ V T + Sbjct: 33 DIVDVPGVGEALEQLDRREFDLILTDLKMQGQSGLDLLERVLSDDPQQCVILMTAHGSVD 92 Query: 335 QIAERVAIA----VDNALAYQEIHRLKER------LVDENLALTEQLNNVDSEFGEIIGR 384 E + + ++ L + +R LV EN L +++ + ++G Sbjct: 93 SAVEAMRMGAFDYLEKPLERDNLVLTLQRAFERIGLVRENRVLQKRVASTT-PIPSMLGD 151 Query: 385 SEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 444 M V + V +A + STVLI+GE+GTGKEL+ARAIH S R + + +NCAA+P Sbjct: 152 HPRMAEVFRVVAKIAATTSTVLIVGESGTGKELVARAIHEGSQRRDNPFMAINCAAIPET 211 Query: 445 LLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFER 504 L+ES+LFGHE+G+FTGA A+ +G FE A+ ++FLDE+G+M + +Q KLLR +QE+E R Sbjct: 212 LIESELFGHEKGSFTGAHARELGVFEAANGGTVFLDEIGEMNVSMQAKLLRAIQEKEVRR 271 Query: 505 LGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAK 564 +G I DVR+I+ATN++L++ + FR DLYYRLNV I+LPPLRER D+ LA+ Sbjct: 272 VGGRVNIPLDVRIISATNKELEQEIRRGSFREDLYYRLNVIRINLPPLRERGSDVKTLAE 331 Query: 565 AFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDI 624 F K + G +++ I L+ L N WPGNVR+LE+VIERAVL+ +V++ Sbjct: 332 FFVKKYSLATGIDVEGISRPALKLLMNYSWPGNVRQLESVIERAVLMAESSVIEPGDLPA 391 Query: 625 VLPEPETPPAATVVALEGE------DEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLL 678 + L E E LI++ ++ + V+ AA LG+ TL Sbjct: 392 EITSTSLLAGVVPFDLPPEGIDMETLEKNLIIKAMERADWVI---GKAAPLLGMSYKTLQ 448 Query: 679 SRMKRLGIDKSA 690 R+++ I++ Sbjct: 449 YRLEKFAIERPD 460 >UniRef50_B8FIT8 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FIT8_DESAA Length = 588 Score = 517 bits (1333), Expect = e-145, Method: Composition-based stats. Identities = 147/360 (40%), Positives = 200/360 (55%), Gaps = 15/360 (4%) Query: 331 NLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYS 390 L AV + L+ L + N F IIG S M + Sbjct: 241 APLESQDGEFLGAVLVIRDITRLVDLERELQERNQ------------FHNIIGASHKMQA 288 Query: 391 VLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDL 450 V + +E +A ++TVLI GE+GTGKEL+A+A+H+ R + V +NC+A+ LLES+L Sbjct: 289 VYQLLENLADFETTVLITGESGTGKELVAKALHHTGSRAFKPFVSVNCSALAENLLESEL 348 Query: 451 FGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKI 510 FGH +GAFTGA GRF+ A +L LDE+GD+ +Q KLLRVLQE+EFER+G + Sbjct: 349 FGHVKGAFTGAIRDYQGRFQAAHTGTLLLDEIGDISPRIQLKLLRVLQEREFERVGDVQP 408 Query: 511 IQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKI 570 I+ DVR+IA TN+DLK+ V EFR DLYYRLNV I LPPLRER EDIPLLA FT + Sbjct: 409 IKVDVRVIACTNQDLKEKVGLGEFREDLYYRLNVMEIKLPPLRERREDIPLLADHFTARF 468 Query: 571 ARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPE 630 ++ I + + + N WPGNVRELE+ IERA +L R ++ L + E Sbjct: 469 EKKFNITIPGVSDKVMNAFMNYHWPGNVRELEHSIERATVLCRDKMISLEHIPGEIAEAY 528 Query: 631 TPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSA 690 + + DE I+ LK T AA+ LG+ R T+ ++++ GI A Sbjct: 529 SLSGPRLKKQPAADEPNEIIDALKRTGW---NKAKAARLLGVSRKTIYRKIEKYGIQSPA 585 >UniRef50_Q1JZC1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JZC1_DESAC Length = 455 Score = 517 bits (1333), Expect = e-145, Method: Composition-based stats. Identities = 154/447 (34%), Positives = 239/447 (53%), Gaps = 29/447 (6%) Query: 261 LTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQC 320 + ++ +S + ++ D+ +L + I + +P MSG L + Sbjct: 16 VLGQLLES---VGHHVTRADNPYAALDILSGEQIDLIISDLKMPRMSGIDFLRHVNDEIG 72 Query: 321 EEKVFTTTNLNLLRQIAERVAIAVDNALAY----------QEIHRLKERLVDENLALTEQ 370 T ++ + + I + L + +L +EN L + Sbjct: 73 PVPFIMLTAYATVQTALQAMKIGAFDYLLKPFDNEEMLLTVDKALDYSKLQNENWLLRRE 132 Query: 371 LNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNN 430 L ++G S AM S+ Q+ VA + +++LI GE+GTGKEL+A+A+H LS R+N Sbjct: 133 LEQNRDR--TLVGNSPAMESLRNQIAQVAPAKTSILITGESGTGKELVAQALHRLSPRSN 190 Query: 431 RRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQ 490 + +V +NCAA LLES+LFGHERGAFTGA ++ G E++D +LFLDE+G+ PL LQ Sbjct: 191 KALVSINCAAFAENLLESELFGHERGAFTGALERKKGLMEVSDGGTLFLDEIGEFPLNLQ 250 Query: 491 PKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLP 550 PKLLRVLQE+ F R+G I +D+R+IAAT+R+L++M+ + FR DLYYRLNV +HLP Sbjct: 251 PKLLRVLQEKTFRRVGGTAEISSDIRIIAATHRNLEQMITEGTFREDLYYRLNVVSLHLP 310 Query: 551 PLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVL 610 PLR R EDIPLL++ F +++R +G + + ++ L + EWPGNVREL+N++ER +L Sbjct: 311 PLRHRREDIPLLSQLFLERLSRDMGCPLPQLSSQAQHDLYHYEWPGNVRELQNILERGLL 370 Query: 611 LTRGNVLQLSLPDIVLPEPET-----------PPAATVVALEGEDEYQLIVRVLKETNGV 659 G L+ + P + E +LI L + GV Sbjct: 371 FCDGPTLEQNHLPQQFHSQAPHHNGCSETAAMPLQQPLPEHLETIEQKLIQAALIDARGV 430 Query: 660 VAGPKGAAQRLGLKRTTLLSRMKRLGI 686 AA+ LG+ R+ L ++K+ + Sbjct: 431 ---QAKAAELLGISRSNLQYKLKKYHL 454 >UniRef50_B8GTB8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GTB8_THISH Length = 453 Score = 517 bits (1332), Expect = e-145, Method: Composition-based stats. Identities = 155/446 (34%), Positives = 232/446 (52%), Gaps = 18/446 (4%) Query: 256 DEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVL 315 ++ + E V + + + + + + T +P + G +L Sbjct: 11 EDDEVMRELVVNVLHGIDATVIPMESSQESLDFIENNEVAVVVTDLRMPRIDGMKVLDFA 70 Query: 316 KLAQCEEKVFTTTNLNLLRQIAERVAIA----VDNALAYQEIHRLKER------LVDENL 365 + +V T + + + + E+ ER L EN+ Sbjct: 71 RQKNPLTQVILMTGHATVESAVQSLKAGAFDYICKPFENVELRHTVERALSHWNLSRENM 130 Query: 366 ALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNL 425 L E+ N V +E IIGRS AM V + ++ A D +VLI GE+GTGKEL+AR IH Sbjct: 131 RLREE-NKVFAEGDVIIGRSAAMDEVHRLIDAAAAYDCSVLITGESGTGKELVARQIHLK 189 Query: 426 SGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDM 485 S R + V +NCAA+P ++ES+LFG+++GAFTGA + G FE A+ ++FLDEV + Sbjct: 190 SPRRDNSFVAINCAAIPEQIIESELFGYQKGAFTGAERAKPGLFETANGGTIFLDEVNNA 249 Query: 486 PLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVF 545 L LQ KLLRVLQ+ F RLG + +VR++AATNRD+ ++A FR DLYYRL V Sbjct: 250 SLSLQAKLLRVLQDATFYRLGDTEPRHVNVRVLAATNRDVPGLIAQETFREDLYYRLRVI 309 Query: 546 PIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVI 605 IH+P LR+R +D+PLLA F K A+R + +D + + L L +WPGNVRELENVI Sbjct: 310 EIHIPALRDRRDDVPLLANYFISKYAKRFNKPVDGMSTQVLGALMRHDWPGNVRELENVI 369 Query: 606 ERAVLLTRGNVLQLSLPDIVLPEPETPPAATV----VALEGEDEYQLIVRVLKETNGVVA 661 +RA++L +G V+ + + + E E I + L+ETNG Sbjct: 370 QRALILCQGKVIDEGVLPPEISRGTELSVRAIDHMQPQTLEEVEVYFIRKTLRETNG--- 426 Query: 662 GPKGAAQRLGLKRTTLLSRMKRLGID 687 A+ LG+ ++TL ++KR I+ Sbjct: 427 DRALCAEILGIDKSTLWRKIKRYSIE 452 >UniRef50_B8FWA2 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8FWA2_DESHD Length = 597 Score = 517 bits (1332), Expect = e-145, Method: Composition-based stats. Identities = 156/528 (29%), Positives = 236/528 (44%), Gaps = 59/528 (11%) Query: 173 NNVDYELLCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDI--DDISIVLRSH 230 + L + L + + ++E V I + + I L + Sbjct: 115 AKMVTTLFRHSEQDLTDLEHTAKELETVKALNETFDTVLNIIRDGIVVVDEKGKITLVNQ 174 Query: 231 RKNKLNIYSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLF 290 L + + + V + + Sbjct: 175 AMADFLT-----LPPEEMIGKPIAEIMSSNQLHHVACTG--------------LSQTSEV 215 Query: 291 DTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAY 350 T + + P++ G ++G + + +AE Sbjct: 216 LTIRGKPLIVSNSPIIKGGKVVGAV-------------GKAVFPHLAEA----------- 251 Query: 351 QEIHRLKERLVDENLALTEQLNNVDSEFG---EIIGRSEAMYSVLKQVEMVAQSDSTVLI 407 QE+ L + E+L + +++ S M + ++ +VA S STVLI Sbjct: 252 QELAEKVRCLEHKVTFFQEELQKNRTAQDIMKDMVAESPQMKKLKDEISIVATSTSTVLI 311 Query: 408 LGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASA-QRI 466 GE+GTGKE +A AIH S R +K+NCA++P L+ES++FG+ GAFTGA+ + Sbjct: 312 TGESGTGKEGVAHAIHLGSDRGKGPFIKVNCASIPESLMESEMFGYVGGAFTGAAKNGKP 371 Query: 467 GRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLK 526 GR E AD +LFLDE+G+MPL LQ KLLRVLQ++E ERLGS + I+ ++R++AATN+ L Sbjct: 372 GRIERADGGTLFLDEIGEMPLALQAKLLRVLQDREIERLGSTETIKVNIRILAATNKKLS 431 Query: 527 KMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETL 586 +A EFR DLYYRLNV +HLPPLRER EDI L F K L N+ I + Sbjct: 432 NAIAKGEFRQDLYYRLNVINLHLPPLRERLEDIEPLTHFFISKFNDILKANVSGITPNAM 491 Query: 587 RTLSNMEWPGNVRELENVIERAVLLTRGNVLQL-SLPDIVLPEPETPPAATVVAL----- 640 TL WPGN+RELENV+ERAV TR +++L LP ++ Sbjct: 492 ATLLQYSWPGNIRELENVVERAVNYTRSGLIELIHLPHQIISGNTALGQVMNKKTIRHQD 551 Query: 641 -EGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 G+ E +I L++ G AA+ L L R+ L ++ + ++ Sbjct: 552 RLGQIERDMIAAALEKAGG---NKTKAAKLLNLSRSRLYDKLNKYDLN 596 >UniRef50_B3E8H3 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Bacteria RepID=B3E8H3_GEOLS Length = 451 Score = 517 bits (1331), Expect = e-145, Method: Composition-based stats. Identities = 158/422 (37%), Positives = 231/422 (54%), Gaps = 13/422 (3%) Query: 275 NLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLR 334 L ER+D + L + + + LP ++G + + T + Sbjct: 30 ELVEREDGKAALKTLQRQSFDLVLSDLRLPGLNGLELFRRAQAEGIAPPFVLLTAFGTVE 89 Query: 335 QIAERVAIAVDNAL-----AYQEIHRLKER-----LVDENLALTEQLNNVDSEFGEIIGR 384 + + V + L + L R + + +L + ++ + E++ Sbjct: 90 EAVAAMKEGVADFLTKPLKDPATLRVLVRRTLAVSMQERSLQVLQERDTAGLPPDEVLFA 149 Query: 385 SEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 444 +AM V + VA + +TVLI GE+GTGKEL AR IH S R + V +NCAA+P Sbjct: 150 GQAMQQVRTLIADVAPTQATVLISGESGTGKELAARMIHRASPRRDAPFVALNCAAIPET 209 Query: 445 LLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFER 504 LLES+LFGHE+GAFTGA+ R G+FELA +LFLDE+G++PL LQ K LRVLQE+ FER Sbjct: 210 LLESELFGHEKGAFTGATQARQGKFELASGGTLFLDEIGELPLALQSKFLRVLQERVFER 269 Query: 505 LGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAK 564 +G N+ ++ DVR+IAATNRDL++ V R FR DLYYRL+VFPIHLP LR+R + +P+L + Sbjct: 270 VGGNRELRADVRIIAATNRDLEEEVRVRRFREDLYYRLHVFPIHLPALRDRRDGLPVLVR 329 Query: 565 AFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDI 624 + A + GR + I + L ++ WPGN+REL+NVIERAV+L +G V L LP Sbjct: 330 YLLRRAAIQTGREVQDIEQQALAAVAEYGWPGNIRELQNVIERAVILCKGQVTLLDLPGG 389 Query: 625 VLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRL 684 V + + E I+ L + AA++LG+ + TL R+K Sbjct: 390 VRQVTASGVIPKSNGSLRDRERNDILDALATCGN---NRRLAAEKLGISKRTLQYRLKEY 446 Query: 685 GI 686 G+ Sbjct: 447 GL 448 >UniRef50_Q1N5U9 Sigma-54 dependent transcriptional regulator/sensory box protein n=1 Tax=Bermanella marisrubri RepID=Q1N5U9_9GAMM Length = 479 Score = 516 bits (1329), Expect = e-144, Method: Composition-based stats. Identities = 162/361 (44%), Positives = 227/361 (62%), Gaps = 2/361 (0%) Query: 326 TTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRS 385 + + + I+ER I A E LKE+L EN L ++ + +IIG+S Sbjct: 119 IQGAIVVFKNISERKRIESALQKALTENRFLKEKLEAENSYLQSEIESNYQS--DIIGQS 176 Query: 386 EAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGL 445 A+ + Q+ + A + + +LI GE+GTGKEL+ARAIH S R + +VK+NC A+P GL Sbjct: 177 PAIEHLQTQISLSAPTSANILIQGESGTGKELVARAIHQQSERQAQTLVKLNCGAIPEGL 236 Query: 446 LESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERL 505 ++S+LFGHE+GAFTGA QRIGRFELA+K +LFLDEV ++PL+ Q KLLRVLQE EFER+ Sbjct: 237 VDSELFGHEKGAFTGAVKQRIGRFELANKGTLFLDEVSELPLDAQVKLLRVLQEGEFERV 296 Query: 506 GSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKA 565 G NK I+ DVR+IAA+N++L++ V D FR DLYYRLNVF + +PPLRER D+P+L+ Sbjct: 297 GGNKTIRVDVRIIAASNKNLEQAVHDGSFRLDLYYRLNVFSVQVPPLRERKSDLPILSHF 356 Query: 566 FTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIV 625 F K +G++ + +L+ +S+ +WPGN+REL N IE +L G + + Sbjct: 357 FAKKACADMGKSFKGLHMPSLKWMSHYQWPGNIRELSNWIEHNAILHTGGLFHIHPMAHA 416 Query: 626 LPEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLG 685 + + E E Q I + L NG +AG GAAQ L L +TL S+MK+LG Sbjct: 417 RHDHSVEHDNESIVSLAEAEKQHIQKALLHCNGRIAGANGAAQLLQLPASTLRSKMKKLG 476 Query: 686 I 686 I Sbjct: 477 I 477 >UniRef50_A4J593 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J593_DESRM Length = 582 Score = 515 bits (1328), Expect = e-144, Method: Composition-based stats. Identities = 142/361 (39%), Positives = 222/361 (61%), Gaps = 17/361 (4%) Query: 340 VAIAVDNALAYQEIHRLKERLVD---ENLALTEQLNNVDSE---FGEIIGRSEAMYSVLK 393 V + EI +L + L + L +++ + + F ++IGRSEA+ ++ Sbjct: 221 VIGGLAVEKDITEIVQLNQELNKASTQVKLLEQEIRKISGQDCAFNKLIGRSEAIQKLIV 280 Query: 394 QVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGH 453 + ++ +++TVL+ GE+GTGKEL+ARAIH S R+ + +NC A+P L ES+LFG+ Sbjct: 281 FGKKISVTEATVLLRGESGTGKELLARAIHQNSPRHMNPFIVVNCGAIPNNLFESELFGY 340 Query: 454 ERGAFTGAS-AQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQ 512 E GAFTGA + G FELA+ +LFLDEVG+MP+E+Q KLLRVLQE F R+G ++ + Sbjct: 341 EGGAFTGADRKGKPGMFELANGGTLFLDEVGEMPIEMQAKLLRVLQEGTFYRVGGSQSVH 400 Query: 513 TDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIAR 572 +VR++AAT+R+L+ M+ R+FR DLYYRLNV + +PPLR+R EDIP L F + + Sbjct: 401 VNVRVLAATHRNLEDMINRRQFREDLYYRLNVVALEIPPLRDRREDIPELVHLFMQEFCQ 460 Query: 573 RLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVL-QLSLPDIVLPE--- 628 + +NI I + + WPGNVREL+N +ER V+LT G+++ + +LP+ + Sbjct: 461 KYDKNIKKIEPAVMTAFLDYTWPGNVRELKNAVERLVVLTDGDIIDEAALPENLRRNTYI 520 Query: 629 ---PETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLG 685 ++ + E E QLI++ L++ G AA+ LG+ R+TL ++++LG Sbjct: 521 SLVTSPVSQGKLMNVAVEAEKQLILKTLQQVRG---NRSEAARVLGIPRSTLYYKLRQLG 577 Query: 686 I 686 I Sbjct: 578 I 578 >UniRef50_C0QC42 Putative transcriptional activator n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QC42_DESAH Length = 922 Score = 515 bits (1327), Expect = e-144, Method: Composition-based stats. Identities = 183/584 (31%), Positives = 276/584 (47%), Gaps = 28/584 (4%) Query: 109 DAGGLYPKFGHYCLMPLAAEGHIFGGCEFIRYDDRPWSEKEFNRLQT--FTQIVSVVTEQ 166 K+ P+ + + + Sbjct: 362 SKLQQSEKYLVISGDPVQLAKTRIEIARLSIKQGSQPQARHMAQKAWKGLAGYGDIFFPD 421 Query: 167 IQSRVVNNVDYEL--LCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDIS 224 ++ + L + + + ++ D++EL++ K + + + Sbjct: 422 DLQHLLGVENGRDPDLKEPETMLQRFTEMIDELVLSNDLNELLTHTVKATNRFLGAERGG 481 Query: 225 IVLRSHRKNKLNIYSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAP 284 + K + + H L + ++ S E++ H+ L Sbjct: 482 VFWFE-DKKTPRLIAAHNLFESDINNKTFR------------SSLELIFKAFHDNTPLIK 528 Query: 285 YERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKV-FTTTNLNLLRQIAERVAIA 343 + +++ G + + + +P T G+L F+ N N L +A ++ Sbjct: 529 HCKVVETLVG-RTKAMLAVPFEVKGTAKGILYHDNAYIDDCFSYFNKNELAGMASYLSKY 587 Query: 344 VDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDS 403 V++ L L R+ ++ +L + II +S M LKQV+ +A +DS Sbjct: 588 VNHLLN------LTRRIEEKTSKNYTRLGEISG--ENIIYQSLIMKKKLKQVDKIAGTDS 639 Query: 404 TVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASA 463 TVLILGETG GKELIAR IH S R + +V ++ ++P L+ES+LFGHE+GAFTGA Sbjct: 640 TVLILGETGVGKELIARRIHERSLRKDYPLVVVDPTSIPETLIESELFGHEKGAFTGADK 699 Query: 464 QRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNR 523 QR GR ELA K +LF+DEVG++PL +Q KLLR LQE+ RLG + I +D RLIAATNR Sbjct: 700 QRTGRVELAHKGTLFIDEVGEIPLSIQVKLLRALQEKTIVRLGGSTTIHSDFRLIAATNR 759 Query: 524 DLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPA 583 DL+K VA FR DL+YRLNV PI +PPLR+R EDI L+A+ F K + Sbjct: 760 DLQKEVAKGNFREDLFYRLNVIPIEIPPLRKRGEDILLIAEYFLKKFRMKYNFPTIEFTP 819 Query: 584 ETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGE 643 E L WPGN+REL N+IERAVLL+ + L++ L E Sbjct: 820 ENKVMLIEYNWPGNIRELNNIIERAVLLSEEDQLEIEL-KTKNNSSHPDDFFRDRPSLDE 878 Query: 644 DEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 + + I VL+E NG + GP GAA+RLG+KRT+L +RM+ LG+ Sbjct: 879 MQRRYIGTVLEECNGQIGGPGGAAERLGMKRTSLYARMRTLGMR 922 >UniRef50_Q1IQS1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IQS1_ACIBL Length = 466 Score = 515 bits (1327), Expect = e-144, Method: Composition-based stats. Identities = 155/456 (33%), Positives = 231/456 (50%), Gaps = 22/456 (4%) Query: 251 EQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDT 310 VD+ ++ + L E + L + I + +SG Sbjct: 8 RFLIVDDQQSIRKLCIAIGNTLGFICSEAESAEAALAALETQSPDIILADLRMGELSGID 67 Query: 311 MLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIA----VDNALAYQEIH------RLKERL 360 L +K +V T + + + + + +E+ K RL Sbjct: 68 FLASVKKLLPRTEVAIMTGYGSIETAVQSMKLGAYDYITKPFRVEELKIILQRMAEKVRL 127 Query: 361 VDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIAR 420 V EN L E++N + E I+G S + VL+ V + + + VLI GE+GTGKEL+AR Sbjct: 128 VAENHFLRERVN-TEMELHGIVGSSAKIQDVLRMVGRLKDTRTPVLICGESGTGKELVAR 186 Query: 421 AIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLD 480 A+H G R V ++C ++ L+ES+LFGHE+GAFTGA + G F+ A+ ++FLD Sbjct: 187 AMHFRGGFAKRPFVAVDCGSLVPTLIESELFGHEKGAFTGAIKPKEGLFQAANGGTIFLD 246 Query: 481 EVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYY 540 E+G++PL+LQ KLLRVLQ+++ +GSN+ ++ DVR+IAATNRDL+ FR DLY+ Sbjct: 247 EIGELPLDLQAKLLRVLQDKQVRPVGSNQSVKVDVRVIAATNRDLEAGYKTGTFRKDLYF 306 Query: 541 RLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRE 600 RLNV ++LP LRER DIP L + F + + GR + ++ +++L +WPGNVRE Sbjct: 307 RLNVVTVYLPSLRERKSDIPSLIQHFIDRPSA--GREGVEVTSQAMKSLMQYDWPGNVRE 364 Query: 601 LENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVAL------EGEDEYQLIVRVLK 654 LEN IERAV L G V+ + L A V+ + E I RV Sbjct: 365 LENCIERAVALGNGEVIDVDDLPPSLQAMAPKKNAPAVSEGYDSTDLEDIERTTIQRVFD 424 Query: 655 ETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSA 690 + G A + LG+ R TL ++KR ID S Sbjct: 425 QVGG---DKGLALKMLGISRATLYRKIKRYNIDISR 457 >UniRef50_Q2LXQ0 Response regulator with sigma 54 interaction domain n=2 Tax=Deltaproteobacteria RepID=Q2LXQ0_SYNAS Length = 502 Score = 515 bits (1327), Expect = e-144, Method: Composition-based stats. Identities = 159/478 (33%), Positives = 234/478 (48%), Gaps = 67/478 (14%) Query: 276 LHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQ 335 + + D L + + T +P +SG +L + E V T + Sbjct: 28 VAQAADGLEALECLEKEQIDVVVTDLKMPKLSGLGLLEHVTSTYPETPVIIITAHGTIET 87 Query: 336 IAERVAIA----VDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFG--EIIGRSEAMY 389 + + + E+ + E+ + + ++ + E I+G SE + Sbjct: 88 AVDALKKGAFDYITKPFDRDELISVIEKAIRTRIKNHGEVILAEEEIDKYGIVGCSEKIR 147 Query: 390 SVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESD 449 + K +E VA + +T+LI GETGTGKELIA AIH S R + +K+NC A+ L+E++ Sbjct: 148 EIYKTIEKVASTKTTILITGETGTGKELIAHAIHRGSPRKDNAYIKINCGAIAKNLIEAE 207 Query: 450 LFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNK 509 LFG+E+GAFTGA++ + G+FELAD+ ++FLDE+G++P ++Q KLL+VLQ+Q FER+G K Sbjct: 208 LFGYEKGAFTGAASAKPGKFELADQGTIFLDEIGEIPRDMQVKLLQVLQDQTFERVGGIK 267 Query: 510 IIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFK 569 IQ DVR+IAATNRDL K + + FR DLYYRLNV PI +PPLRER EDI L F + Sbjct: 268 TIQVDVRIIAATNRDLIKEIKEGNFREDLYYRLNVVPIKMPPLRERKEDIIPLTHYFLDR 327 Query: 570 IARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIV---- 625 +L +I I + L WPGN+RELEN+IER +LLT+GN + Sbjct: 328 FNDKLNMDIKGIDPQVLECFKKYNWPGNIRELENLIERIILLTKGNTISPEDVPEEIKTM 387 Query: 626 ----LPEPETPPAATVVA-LEGEDE----------------------------------- 645 LPE E L E E Sbjct: 388 EDQDLPENEVHEKNPFEEYLLREMENFTERLVLMARSEKKREAGDRLEEDSLDSTEKDQG 447 Query: 646 --------------YQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKS 689 ++I ++L+E +G + AA+RLG R L +M + + K Sbjct: 448 VYRKFIKSKTAEVEKKMIEKILEECSGNI---THAAKRLGFSRKGLQIKMVKYNLRKK 502 >UniRef50_Q1Q6P9 Similar to Sigma-54 dependent transcriptional regulator n=2 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q6P9_9BACT Length = 512 Score = 514 bits (1325), Expect = e-144, Method: Composition-based stats. Identities = 168/514 (32%), Positives = 259/514 (50%), Gaps = 48/514 (9%) Query: 197 VLSRLDMDELVSEVAKEIHYYFDIDD-ISIVLRSHRKNKLNIYSTHYLDKQHPAHEQSEV 255 + S ++D+ + + +D ++IVL + + S H + + + Sbjct: 27 LASDGEIDKSIIDNLD--SDVIILDKDLNIVLMNKSAERTFGVSFHEVKGTNYLALRLRS 84 Query: 256 DEAGTL--TERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTML- 312 E V K+K+ I + + +P++ G +L Sbjct: 85 IEQELARNLNNVLKTKKAFTIKELQIISPDKVTHFFDQS---------CIPILDGGGVLQ 135 Query: 313 GVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALT--EQ 370 GVL ++ + + +RV + + + + L + L +N + + Sbjct: 136 GVLSIS---------------KDVTKRVYKEIQYQESQKMLKALFQELEVKNTTIRSLQT 180 Query: 371 LNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNN 430 F +IG+S M ++ +E V+Q+DSTVLI GETGTGKEL+ARAIH S R + Sbjct: 181 SLRERYSFHSLIGKSYLMQNIYDLIEKVSQTDSTVLITGETGTGKELVARAIHYNSHRKD 240 Query: 431 RRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQ 490 +V +NCAA+P LLES+LFGH +G+FTGA + G+FELADK ++FLDE+G++ + Q Sbjct: 241 YNLVAVNCAALPETLLESELFGHVKGSFTGAIRDKKGKFELADKGTIFLDEIGELSIPTQ 300 Query: 491 PKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLP 550 KLLRVLQE+ ER+G K I+ D+R+IAATN+D+ +++ FR DL+YRLN+ I LP Sbjct: 301 VKLLRVLQERYIERVGDEKTIKVDIRIIAATNQDILELIEKGTFRKDLFYRLNIISIRLP 360 Query: 551 PLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVL 610 L+ER +DIPLL F K R +NI+ I LR L WPGN+RELE VIE+AVL Sbjct: 361 SLKERTDDIPLLVNHFIEKFNIRFKKNINGISPNALRKLLAYSWPGNIRELEGVIEKAVL 420 Query: 611 LTRGNVLQ-------------LSLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETN 657 L ++ L LP + P+ + E + V V ++ + Sbjct: 421 LEESETIENIELPTDHSATTNLCLPKPLNAGPDISSYEDLQKRLDMLEREYFVSVFQKHH 480 Query: 658 GVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSAL 691 G + A GL R T+L++MK+ + KS Sbjct: 481 GRIGSI---AACTGLNRRTILNKMKKFSLKKSLF 511 >UniRef50_Q1PZ68 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZ68_9BACT Length = 470 Score = 514 bits (1325), Expect = e-144, Method: Composition-based stats. Identities = 152/425 (35%), Positives = 236/425 (55%), Gaps = 26/425 (6%) Query: 287 RMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDN 346 + + I +P + G L ++ + V T + E + + Sbjct: 47 QKIHTLQPALIFLDINMPQLDGLKTLEKIREMKHPPLVVIVTAHGSEKIAVEAMKKGAYD 106 Query: 347 ALA----YQEIHRLKE------RLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVE 396 +A +E+ + L +EN L ++ ++ +GE++G+S+ M V ++E Sbjct: 107 YIAKPYEMEELRIITRNALEKIALQEENTRLRMEIGMLE-GYGELLGQSKIMQEVFDRIE 165 Query: 397 MVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERG 456 V +D TVL+ GE+G+GKEL A IH S R N + MNCAA+P L+ES+LFGHERG Sbjct: 166 KVVTADVTVLLQGESGSGKELAAHEIHRRSKRKNGPFIVMNCAAVPETLIESELFGHERG 225 Query: 457 AFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVR 516 +FTGA+ +R+G+FE+A+ ++ LDE+GDM L Q KLLRVLQEQ+FERLG + + DVR Sbjct: 226 SFTGATERRMGKFEMANNGTILLDEIGDMSLSTQSKLLRVLQEQKFERLGGTETLAVDVR 285 Query: 517 LIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGR 576 +I+AT+RDL++ + + FR DLYYR+NV I +PPLR+R EDIPLL F +++ + Sbjct: 286 IISATHRDLEEEIEEGRFREDLYYRINVVNIKIPPLRKRKEDIPLLVNRFIQHFSKKHYK 345 Query: 577 NIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAAT 636 N+ SI + ++ LS WPGN+R+L+N IE A++LT +VL +S + E P +T Sbjct: 346 NVVSISNDAMKKLSAYNWPGNIRQLKNTIESAIVLTNNDVLDISDLSEDIIREEKTPDST 405 Query: 637 ------------VVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRL 684 L E I + L+E G ++ A+ L + R L ++K L Sbjct: 406 KNVHYHLSFREAKKILIENFEKDFISKKLEECGGNIS---HTAEALDMHRQNLQQKIKDL 462 Query: 685 GIDKS 689 ++K Sbjct: 463 QLNKD 467 >UniRef50_D0TB92 Two-component system response regulator n=1 Tax=Bacteroides sp. 2_1_33B RepID=D0TB92_9BACE Length = 455 Score = 514 bits (1325), Expect = e-144, Method: Composition-based stats. Identities = 151/454 (33%), Positives = 233/454 (51%), Gaps = 21/454 (4%) Query: 250 HEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGD 309 + D+ + + + + + L + I +P+++G Sbjct: 3 AKIVVADDEPRIRAMIALLLKEDGYEVQTAANGQEAVDALLSFRPDVILLDQQMPVLTGV 62 Query: 310 TMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIA----VDNALAYQEIHRLKERLVDENL 365 L +K + V T + + V ++ ++ R V E+ Sbjct: 63 EALEKIKRLCPNQVVVFITAFGSVSLAVDAVKKGAYDFIEKPFDNDKLLLTVSRAV-EHC 121 Query: 366 ALTEQLNNVDSEFGE----IIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARA 421 + ++ ++ ++ G+ IIG + V+ QVE VA++D+TVLI GE+GTGKELIA A Sbjct: 122 RMKGEIKHLKNKLGDMNTGIIGEKSGLRQVMLQVERVAETDATVLIHGESGTGKELIAWA 181 Query: 422 IHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDE 481 IH+ S R ++ V +NC A+P L+ES+LFGHE+GAFT A + G FE A+ +LFLDE Sbjct: 182 IHDRSKRVSQPFVAINCGAIPLTLMESELFGHEKGAFTDAKETQAGTFERANGGTLFLDE 241 Query: 482 VGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYR 541 +G++PL+ Q KLLRVL+E++ R+G K I +VR++AATNR+L++ V +FR DL YR Sbjct: 242 IGELPLDAQVKLLRVLEERKITRIGGKKAIPVNVRIVAATNRNLEEEVRLGKFRLDLLYR 301 Query: 542 LNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVREL 601 LNVF I LPPLRER EDIPLLA F K L +I+SI E + L +WPGNVR+L Sbjct: 302 LNVFTIQLPPLRERKEDIPLLAAFFLRKHNSLLNLSIESITPEAMDQLCAYDWPGNVRDL 361 Query: 602 ENVIERAVLLTRGNVLQLSLPD---------IVLPEPETPPAATVVALEGEDEYQLIVRV 652 EN ++ A++L + + E ++ E I+ Sbjct: 362 ENAVQSAMILCVDRQIHPGHLPARIKSYQMERLTAPQEAEEDTSLRDTNSLAEKARILSA 421 Query: 653 LKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 L++ N A+ L + R TL ++MKR + Sbjct: 422 LQKHN---YNRTLTAEALNISRKTLFNKMKRYNL 452 >UniRef50_A4J599 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J599_DESRM Length = 575 Score = 514 bits (1324), Expect = e-144, Method: Composition-based stats. Identities = 167/548 (30%), Positives = 282/548 (51%), Gaps = 34/548 (6%) Query: 162 VVTEQIQSRVVNNVDYELLCRERDNFRILV-AITNAVLSRLDMDELVSEVAKEIHYYFDI 220 VV R+V + ++ + + +LV + S LD ++L E+ + Sbjct: 38 VVLAMDGDRLVGVMLWKDVINRKLESDVLVNQVMRRDFSSLDEEDLEREILAFLPEL--- 94 Query: 221 DDISIVLRSHRKNKLNIYSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERD 280 ++V R+++ + L + S + V E V ++ + + + D Sbjct: 95 RYHALVCRNNQGDILGVLSYDQVFHD----LALRVCETEARINAVVETVDEAVCIVDNND 150 Query: 281 DLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLR------ 334 + + + +G + Q + P+ S T L V+ E + + + + Sbjct: 151 MVTSWNSRAEELYGIKAQDIIGKPICSFFTNL-VVTRVNKEWQEIRSLHHQPVPGTHVLI 209 Query: 335 -----QIAERVAIAVDNALAYQEIHRLKERLVD---ENLALTEQLNN---VDSEFGEIIG 383 ++ +V V EI +L ++L + L ++++ + F + G Sbjct: 210 NATPVRLGPKVIGGVTAERDVTEIVQLNQKLNQASSQVQRLEKEIDKFSTDRNPFAAVKG 269 Query: 384 RSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPA 443 + + ++ A + + VL+ GE+GTGKEL A+AIH S R +++ +NCAA+P Sbjct: 270 HHKRLTELINVARKAALTSAVVLLRGESGTGKELFAKAIHEASPRIDKKFCVINCAAIPP 329 Query: 444 GLLESDLFGHERGAFTGASA-QRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEF 502 L ES++FG+E GAFTGA +IG FE+AD +LFLDE+ ++PL++Q KLLRVLQ+ F Sbjct: 330 SLFESEMFGYESGAFTGADKKGKIGVFEMADGGTLFLDEISELPLDMQVKLLRVLQDGVF 389 Query: 503 ERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLL 562 R+G + I+ DVR+IAATNR L+ M+A FR DLYYRLNV + +PPLRER EDIP L Sbjct: 390 FRIGGSTPIKVDVRIIAATNRSLEDMMAHGTFREDLYYRLNVVSLEIPPLRERREDIPEL 449 Query: 563 AKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGN-VLQLSL 621 F + ++ + I + + T WPGN+R+L+N+IER V+LT G+ VL+ ++ Sbjct: 450 VYLFLQEFSQLYNKQISKLEPGVMATFLAYSWPGNIRQLKNIIERMVILTEGDTVLESAI 509 Query: 622 PDIVL---PEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLL 678 P+ + + + + ++ + E +LI+R LK+ NG AA+ LG+ R+TL Sbjct: 510 PESLKLSSRQDQATATIGLASVTEQTERELIIRTLKQVNG---NRSEAARMLGIPRSTLY 566 Query: 679 SRMKRLGI 686 +M +LGI Sbjct: 567 YKMHQLGI 574 >UniRef50_B2V8F5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Sulfurihydrogenibium RepID=B2V8F5_SULSY Length = 440 Score = 514 bits (1324), Expect = e-144, Method: Composition-based stats. Identities = 154/438 (35%), Positives = 254/438 (57%), Gaps = 11/438 (2%) Query: 255 VDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGV 314 +D+ ++ + + + ++ + I + LL +G +L Sbjct: 7 IDDEESILKVIKTVLSEAGFEVLTAKSKKESLSLIEKEKFDLIISDFLLEDGTGLEILES 66 Query: 315 LKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNAL-AYQEIHRLKERLVDENLALTEQLNN 373 + T + E + ++ + +I L + + ++ + Sbjct: 67 FRKKDILTPFLIITAYGSINGAVEAIKKGANHYIPKPIDIDNLIKIIDFYIK--KQENFD 124 Query: 374 VDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRM 433 V+ EF IIG+S+ M + K++++V++S+S++LI GE+GTGKEL+A+AIH S R N+ Sbjct: 125 VEEEFEGIIGKSQKMKDLFKEIDVVSKSESSILIEGESGTGKELVAKAIHRRSKRANQPF 184 Query: 434 VKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKL 493 + +NC+A+P L E++LFGHE+G+FTGAS + IG+ ELA + +LFLDE+G+MPL +Q KL Sbjct: 185 IPINCSAIPNELFENELFGHEKGSFTGASNREIGKIELAGEGTLFLDEIGEMPLFMQAKL 244 Query: 494 LRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLR 553 LRVLQE+EF R+G ++I+ R+I+ATNR+L++MV ++EFR DL+YR+NV + +PPLR Sbjct: 245 LRVLQEREFFRVGGKELIKMRCRVISATNRNLEEMVENKEFREDLFYRINVIHLKIPPLR 304 Query: 554 ERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTR 613 ER EDIPLL K F K ++ +N+ I + L L N +WPGNVR+LEN+IERAV+L + Sbjct: 305 ERKEDIPLLVKKFIDKFSKINNKNVYDIDNDALEILMNYDWPGNVRQLENIIERAVVLCQ 364 Query: 614 GNVLQLSLPDIVLPEPETPPAATVVA-----LEGEDEYQLIVRVLKETNGVVAGPKGAAQ 668 G ++ + + + + + + E +I++VL+E N AAQ Sbjct: 365 GEIITANHLPDRIKSNSQKISENIRSENNSLNLYDIEKNIILKVLQEEN---FNQTRAAQ 421 Query: 669 RLGLKRTTLLSRMKRLGI 686 +LG+ R L ++MK G+ Sbjct: 422 KLGISRKQLRTKMKNFGL 439 >UniRef50_A0LM32 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=A0LM32_SYNFM Length = 450 Score = 513 bits (1323), Expect = e-144, Method: Composition-based stats. Identities = 151/450 (33%), Positives = 226/450 (50%), Gaps = 18/450 (4%) Query: 251 EQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDT 310 + VD+ + E + + D M+ + + +P +SG Sbjct: 6 KVLVVDDEKIVRESLVEWFRKSGYEADSADGGRSALEMVAGKDYDLVFLDIKMPDVSGFE 65 Query: 311 MLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALA----------YQEIHRLKERL 360 +L +K V T + + + + L + E ++++ Sbjct: 66 VLDRIKADCPYTLVVMITAYGSVETAVDAMKRGASDYLMKPFDPDELCCHLERLLQQKKI 125 Query: 361 VDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIAR 420 VDEN L E +++ E+IG S M + +E VAQ DS +L+ GETGTGKE++A+ Sbjct: 126 VDENAMLREHISSG-MHCRELIGVSNCMQQLFALIEQVAQVDSPILLRGETGTGKEMVAK 184 Query: 421 AIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLD 480 AIH +S R V +NC A LLES+LFGHE AFTGA + GR E+A +LFLD Sbjct: 185 AIHAMSERRGGPFVPINCGAFAETLLESELFGHESRAFTGAGRAKKGRLEMASGGTLFLD 244 Query: 481 EVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYY 540 EVG++PL++Q LLRVL+E+ F R+G I D RLI AT++DL + FR D YY Sbjct: 245 EVGEIPLKMQIDLLRVLEEKAFTRVGGISEISVDFRLICATHKDLAMEIERGAFRQDFYY 304 Query: 541 RLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRE 600 RLNV + +PPL R +DIP+LA+ F +I + + + I + + L + WPGNVRE Sbjct: 305 RLNVIEVEIPPLHARIDDIPVLAQCFLERIGKETNKPVVGIRQQGIEFLKSYPWPGNVRE 364 Query: 601 LENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVV 660 LEN IERAV+L + L + P P ++ E+E Q + R+L + Sbjct: 365 LENAIERAVVLAKERYLTRDDFAFLCRSPAQPFPQSL----RENEKQHLERILSFCGWNI 420 Query: 661 AGPKGAAQRLGLKRTTLLSRMKRLGIDKSA 690 + AA L + R TL S++++ I A Sbjct: 421 S---KAAAILEISRVTLHSKIRKFDIRPPA 447 >UniRef50_C1ZJW6 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains n=2 Tax=Planctomyces RepID=C1ZJW6_PLALI Length = 662 Score = 513 bits (1323), Expect = e-144, Method: Composition-based stats. Identities = 151/516 (29%), Positives = 255/516 (49%), Gaps = 27/516 (5%) Query: 177 YELLCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLN 236 + R ++ + + + ++L++ +A+E D D SI + +++ Sbjct: 158 TIKAQERAEKLREILKLAAQLANEQQTEKLLTRIAEEATRLLDCDRASIFIWDREHHEVI 217 Query: 237 IYSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQ 296 + + + + V +++ ++ D R + + G + Sbjct: 218 ACPALGV-----EGGSLRLSDKVGVVGEVIAKVQLIRVDDAYADPRF--HRKVDASSGYK 270 Query: 297 IQTLCLLPLMS-GDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHR 355 L PL +LG ++ + F+ + L + ++A A+ N R Sbjct: 271 TSNLLCGPLRDLDGKVLGAFEVINHRQGPFSQEDEITLLDLCIQIAAALQN-------TR 323 Query: 356 LKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGK 415 +E LV N LTEQ++ I+G S A+ ++ + +A +D VLILGE+GTGK Sbjct: 324 ERELLVTSNRQLTEQVSRGV----NIVGESPAIVAMRSTIRRLAGTDLPVLILGESGTGK 379 Query: 416 ELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKS 475 E++A ++H R +R + +NCAA+ LLES+LFGHERG+FT A R G+FELA+ Sbjct: 380 EVVASSLHYQGSRADRPFIAVNCAALTETLLESELFGHERGSFTDAHEMRRGKFELAEGG 439 Query: 476 SLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFR 535 ++FLDE+GD+ Q KLLRVL+++ R+G ++ I + R+IAATN L + V ++FR Sbjct: 440 TIFLDEIGDLSAGGQAKLLRVLEQKVITRVGGSQTIPINARVIAATNARLAEAVRAKKFR 499 Query: 536 SDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWP 595 DLY+RLNV + +PPLRER +D+ LA+ F + A + R + AE R L + WP Sbjct: 500 EDLYFRLNVVTLEIPPLRERADDVLPLAEYFLEQFAVQARRGKMHLSAEARRRLQSHAWP 559 Query: 596 GNVRELENVIERAVLLTRGNVLQLSLPDIVLPEP-----ETPPAATVVALEGEDEYQLIV 650 GNVREL N++ER L +++ +L E + + + I Sbjct: 560 GNVRELRNLMERVAFLAPAERIEVEDLAFILSPERDSFHEPSLDMGLSEATNSFQQEYIR 619 Query: 651 RVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 R +K ++ AA+ LGL R+ L +M++L + Sbjct: 620 RAIKRVRNNMS---EAARLLGLHRSNLYRKMRQLDM 652 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 49/366 (13%), Positives = 113/366 (30%), Gaps = 20/366 (5%) Query: 14 LFDITRTLLQQPDLASLCEALSQLVKRSALADNAAIVLWQAQTQRASYYASREKDTPIKY 73 + + L + L +++ R D A+I +W + + + Sbjct: 171 ILKLAAQLANEQQTEKLLTRIAEEATRLLDCDRASIFIWDREHHEVIACPALGVEGGSLR 230 Query: 74 EDETVLAHGPVRSILSRPDTLHCSYEEFCETWPQLDAGGLYPKFGHYCLMPL-AAEGHIF 132 + V G V ++++ + + + K + PL +G + Sbjct: 231 LSDKV---GVVGEVIAKVQLIRVDDAYADPRFHRKVDASSGYKTSNLLCGPLRDLDGKVL 287 Query: 133 GGCEFIRYDDRPWSEKEFNRLQTFTQIVSVVTEQIQSRVVNNVDYELLCRERDNFRILVA 192 G E I + P+S+++ L ++ + + R + L + +V Sbjct: 288 GAFEVINHRQGPFSQEDEITLLDLCIQIAAALQNTRERELLVTSNRQLTEQVSRGVNIVG 347 Query: 193 ITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQHPAHEQ 252 + A+++ I D ++L K + ++ + A Sbjct: 348 ESPAIVAMR----------STIRRLAGTDLPVLILGESGTGK-EVVASSLHYQGSRADRP 396 Query: 253 SEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDT-- 310 LTE + +S+ D G I + L +G Sbjct: 397 FIAVNCAALTETLLESELFGHERGSFTDAHEMRRGKFELAEGGTIFLDEIGDLSAGGQAK 456 Query: 311 MLGVLK---LAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLAL 367 +L VL+ + + N ++ R+A AV ++++ + E L Sbjct: 457 LLRVLEQKVITRVGGSQTIPINARVIAATNARLAEAVRAKKFREDLYFRLNVVTLEIPPL 516 Query: 368 TEQLNN 373 E+ ++ Sbjct: 517 RERADD 522 >UniRef50_A3ESE7 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Leptospirillum sp. Group II RepID=A3ESE7_9BACT Length = 473 Score = 513 bits (1323), Expect = e-144, Method: Composition-based stats. Identities = 160/375 (42%), Positives = 222/375 (59%), Gaps = 20/375 (5%) Query: 317 LAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDS 376 + + N LL+ + +V V+ +I LKE L Sbjct: 113 VDALGRRRVLRLNTALLKDSSGKVFGGVEIFHDISQIVALKEEL------------KGRY 160 Query: 377 EFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKM 436 FG IIGRSE M + + ++AQS STVLI GE+GTGKEL+A A+H S R VK+ Sbjct: 161 SFGRIIGRSEKMQELFDLLPVIAQSKSTVLIEGESGTGKELVAHALHENSPRREGPFVKL 220 Query: 437 NCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRV 496 NCAA+ G+LES+LFGH +GAFTGA R GRFELA +LFLDE+G++ +Q KLLRV Sbjct: 221 NCAALSEGVLESELFGHVKGAFTGAVQSRPGRFELASGGTLFLDEIGEISPSMQVKLLRV 280 Query: 497 LQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERP 556 LQE+EFER+G K ++ DVR+IAATNRDLK+ + + FR DLYYRL V P+ LPPLRER Sbjct: 281 LQEEEFERVGGTKTVKVDVRVIAATNRDLKQAMEEGSFRKDLYYRLRVIPVTLPPLRERQ 340 Query: 557 EDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNV 616 D+PLL ++F + LG+NI + +E ++ L N +PGN+REL+N+IE A LL + Sbjct: 341 GDLPLLIQSFIERYNAELGKNIQGLTSEAMKVLLNYHYPGNIRELQNIIEHAALLCNDSR 400 Query: 617 LQL-SLPDIVLPEPETPPAATVVALEGE----DEYQLIVRVLKETNGVVAGPKGAAQRLG 671 + L LP +LP + +E E +LI + E+ G V+ A++L Sbjct: 401 IDLRHLPGDLLPAQSQSSFLELAMMEENPVRYVEKELIRLAMAESGGNVS---EVARKLS 457 Query: 672 LKRTTLLSRMKRLGI 686 + R+TL R+K + + Sbjct: 458 MGRSTLWRRLKEMKL 472 >UniRef50_B8FXH0 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8FXH0_DESHD Length = 703 Score = 513 bits (1322), Expect = e-144, Method: Composition-based stats. Identities = 161/462 (34%), Positives = 247/462 (53%), Gaps = 23/462 (4%) Query: 246 QHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCL--- 302 + +H + ++ E V ++ ++ + +++++ + D G ++Q + Sbjct: 244 EEVSHRLNSNEKLMATLEAVVENSYEGMVVIDDQENIVLMNQFFLDVIGVKVQDVIGKKI 303 Query: 303 --------LP--LMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQE 352 LP L SG G + + + + ++ +A + + + Sbjct: 304 NDISPNSSLPQTLKSGKAQFGETWHLKGRDFIIMRVPIEREGKVVGALAKTLFKNMEIAK 363 Query: 353 IHRLK-ERLVDENLALTEQLNNVDSE---FGEIIGRSEAMYSVLKQVEMVAQSDSTVLIL 408 + K RL + E+L S F +IIG S M +Q+ ST+LIL Sbjct: 364 MFAKKVMRLEENLAYYKEELGKFHSSQFVFDDIIGESPRMKKAKSLAHRASQTTSTILIL 423 Query: 409 GETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQ-RIG 467 GE+GTGKE+ + AIH S R+N +K+NCAA+P LLES+LFG++ GAFTGA + G Sbjct: 424 GESGTGKEVFSHAIHKSSIRSNGPYIKVNCAALPEDLLESELFGYDEGAFTGARKGGKPG 483 Query: 468 RFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKK 527 +FELADK ++FLDE+GDM L +Q KLLRVLQE+E ERLG + I+ DVR+IAATNRDL K Sbjct: 484 KFELADKGTIFLDEIGDMSLGMQAKLLRVLQERELERLGGTEPIKVDVRIIAATNRDLHK 543 Query: 528 MVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLR 587 MV + +FR DLYYRLNV I LPPLRER EDI +A+ KI +RLG +I + E++ Sbjct: 544 MVMEHKFRLDLYYRLNVLTIDLPPLRERKEDIGFIARGLIEKINKRLGTDIQGVRPESIT 603 Query: 588 TLSNMEWPGNVRELENVIERAVLLTRGNVLQLSL--PDIVLPEPETPPAATVVALEGEDE 645 L +WPGN+RELEN++ERA+++ + V+ T+ E Sbjct: 604 HLCAYDWPGNIRELENILERAIVICDEAWILPKHLALPGVMETITLGAEQTLEYALQAAE 663 Query: 646 YQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 +++ + L+ G AA+ LG+ R+ L ++ + I Sbjct: 664 REILDKTLRRVQG---NKVQAARILGIHRSVLYKKLAKYNIQ 702 >UniRef50_B8F9K7 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8F9K7_DESAA Length = 464 Score = 513 bits (1322), Expect = e-144, Method: Composition-based stats. Identities = 145/455 (31%), Positives = 230/455 (50%), Gaps = 21/455 (4%) Query: 253 SEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTML 312 D+ T T + + E + +D ++L +T + + +P + G +L Sbjct: 8 LVADDDRTTTAILKNTLEKQSLTPVVANDGIQALKILEETPVDLVIADYQMPGLDGFELL 67 Query: 313 GVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALA----------YQEIHRLKERLVD 362 +K + T + + + L E R+ Sbjct: 68 QAMKDRGMDIPFVMVTAHGSVDMTMNAMRLGAIEYLVKPVDPLDIVVLVEKTLNINRMKS 127 Query: 363 ENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAI 422 L +++ F I+G+S M + + + ++S + VLI GE+GTGKEL A+A+ Sbjct: 128 RLSRLQKEVEK-KYHFTNIVGQSPQMQILFESIHKASKSTANVLITGESGTGKELAAKAV 186 Query: 423 HNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEV 482 H V +NC+A +G LES+LFGH +GAFT A +GRFELA+K +LFLDEV Sbjct: 187 HYNGPLKEGPFVAVNCSAFSSGTLESELFGHVKGAFTDAHRDHMGRFELANKGTLFLDEV 246 Query: 483 GDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRL 542 GD+P ++Q KLLRVLQ++ FER+G+ + I +D RL+AATNRDLK +V +FR DL+YRL Sbjct: 247 GDIPADIQVKLLRVLQDKTFERVGAQEPIHSDFRLVAATNRDLKDLVRKGKFREDLFYRL 306 Query: 543 NVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELE 602 NV + P LRE PEDIPLL F + + GR+I ++ ++ + WPGNVR+LE Sbjct: 307 NVIGMTTPALREHPEDIPLLISHFLKRYGQVGGRSIKTLSMHAMKIMQEYRWPGNVRQLE 366 Query: 603 NVIERAVLLTRGNVLQLSLPDIVLPEPETPPA-------ATVVALEGEDEYQLIVRVLKE 655 N IE A + G++++ + + + P++ T+ + E +I+R L++ Sbjct: 367 NAIESAAAMCDGSMIRTADLPLEITAPQSEDPLREDAYRGTLPEVVERIEKHMILRALEQ 426 Query: 656 TNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSA 690 V AA+ LG+ + +M G+ K Sbjct: 427 NQWV---KAHAARTLGVSERVVSYKMANYGLTKDK 458 >UniRef50_Q023H8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q023H8_SOLUE Length = 465 Score = 513 bits (1322), Expect = e-144, Method: Composition-based stats. Identities = 154/419 (36%), Positives = 221/419 (52%), Gaps = 21/419 (5%) Query: 284 PYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIA 343 +L + + T LP MSG +L ++L E V T ++ E + Sbjct: 38 EAFAILDKASQSLVMTDLHLPGMSGLELLKKVRLDYPETAVIVMTAFGTIQTAVEAMKAG 97 Query: 344 VDNALA----YQEIHRLKER------LVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLK 393 + L E+ L R L++E L L+ F I+G S + L Sbjct: 98 AYDFLTKPIHPYELKMLVRRCLEHHRLIEEVQVLRTALDE-KYGFEAIVGSSSQLMRALD 156 Query: 394 QVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGH 453 VA +D+T+LI GETGTGKEL+A+AIH S R +R + +NC A+P LLES+LFGH Sbjct: 157 VAARVASTDATILIYGETGTGKELVAKAIHLRSSRRDRPFITINCGAIPKELLESELFGH 216 Query: 454 ERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQT 513 +G+FTGA + G+ E+AD ++ LDE+G+MPLELQ ++LR++QE+E E++G+ + Sbjct: 217 VKGSFTGALTHKKGKVEMADGGTVLLDEIGEMPLELQVRILRLIQEREIEKVGATSPTKV 276 Query: 514 DVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARR 573 DVR++AAT+R+L MV FR DLYYRL V PI+LPPLRER DI +L + F K + Sbjct: 277 DVRIVAATHRELAGMVKAGTFREDLYYRLLVVPINLPPLRERTGDILILVQHFLEKCRMK 336 Query: 574 LGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPP 633 R + + L +N WPGNVR+LEN +ER VLL R + + S L PP Sbjct: 337 HSRPNLMMSTDLLPYFTNYSWPGNVRQLENAVERLVLLARDSTINASDLPDFLSAAPAPP 396 Query: 634 AATVVAL-------EGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLG 685 V + E LI++ LK+ G AAQ L + R R+++ Sbjct: 397 PEPVPVALPEGGINLEDLEKDLILQALKKYAG---NQTRAAQYLNMSRRAFAYRLEKYD 452 >UniRef50_C0GRG2 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GRG2_9DELT Length = 464 Score = 512 bits (1319), Expect = e-143, Method: Composition-based stats. Identities = 151/376 (40%), Positives = 222/376 (59%), Gaps = 13/376 (3%) Query: 317 LAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDS 376 + + + +L + AV+ E+ RL +L L E+ S Sbjct: 90 MRKDGSYITVLKTAAVLSDDQGQTMGAVEIVTDISEMDRLDRQLRQLTRTLDEE-----S 144 Query: 377 EFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKM 436 F I+G S M ++ + VE AQSD V I GE+GTGKEL+A+AIHNLS R + +++ Sbjct: 145 SFQGIVGHSRQMKNLFELVEKAAQSDFPVFICGESGTGKELVAQAIHNLSPRAEQPYIQV 204 Query: 437 NCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRV 496 NCAA+ LLES+LFGH +GAFTGA R GRFE A K +FLDE+GD+P+ +Q KLLRV Sbjct: 205 NCAALNESLLESELFGHVKGAFTGALQHRKGRFEAAHKGDIFLDEIGDLPMAMQVKLLRV 264 Query: 497 LQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERP 556 L+ + FER+G N+ I D+R I ATN++L ++A FR DL+YR+NV PIHLPPLRER Sbjct: 265 LETKTFERVGDNRTISVDLRFITATNKNLPDLIARGGFREDLFYRINVIPIHLPPLRERK 324 Query: 557 EDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNV 616 ED+P L F +++R+ +NI + E +R WPGNVREL++ +E + +L G+ Sbjct: 325 EDVPHLVDFFIKRLSRKNKKNIQGLSPEAMRIFMQYSWPGNVRELKSALEYSYVLAEGDR 384 Query: 617 LQLS-LPDIVLPEPETPPAATVVALEGED----EYQLIVRVLKETNGVVAGPKGAAQRLG 671 ++ LP+ + A + E+ + Q ++ LK+++G AA+ LG Sbjct: 385 IRSENLPEYLKDGGNDFQAVDLPPAPAENLQQRQKQELIEALKQSSG---NKSQAARLLG 441 Query: 672 LKRTTLLSRMKRLGID 687 + R T+L+RM++ GID Sbjct: 442 INRVTVLNRMRKYGID 457 >UniRef50_Q0EZK3 Response regulator of hydrogenase 3 activity (Sensor HydH) n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EZK3_9PROT Length = 463 Score = 512 bits (1319), Expect = e-143, Method: Composition-based stats. Identities = 150/458 (32%), Positives = 235/458 (51%), Gaps = 26/458 (5%) Query: 255 VDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGV 314 V++ + ++ E ++ + + + LP +G ++ Sbjct: 10 VEDNEDFRLILQEALERSGFHVTAVANAMRAREAMTLGKFDLSLLDVRLPDGNGIELMRE 69 Query: 315 LKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALA--------YQEIHRLK--ERLVDEN 364 + + + + T + + V + ++ L I L ++ +N Sbjct: 70 FRHSDPDMGIIIMTGYAEVDTAVDAVRLGANDFLKKPFDIDEMLVRIDELIKTRQIKADN 129 Query: 365 LALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHN 424 L +L + +IG+ A+ + + V ++A SDSTVLI GE+G GKE++A+A+H Sbjct: 130 KNLR-ELVRSQDQNTGLIGQCPAIQKLTETVSLLANSDSTVLITGESGCGKEVLAKALHK 188 Query: 425 LSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGD 484 R+ + +V +NC A+P LLES+LFGH +GAFTGA R GRFE+A+ ++FLDE+GD Sbjct: 189 SGSRSGKPLVSINCGAIPEELLESELFGHVKGAFTGAVRARPGRFEIANGGTIFLDEIGD 248 Query: 485 MPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNV 544 M +LQ KLLRVLQE+ FE +GS + I DVR+IAAT+RDL+ +A FR DLYYRLNV Sbjct: 249 MSAKLQVKLLRVLQERCFEPVGSQQSIHVDVRVIAATHRDLEAEIAAGRFREDLYYRLNV 308 Query: 545 FPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENV 604 P+ LPPLRER +DI LL F + ++ +I + E R + N +WPGNVREL+N+ Sbjct: 309 IPLTLPPLRERGDDILLLTDHFITRFNQQKKADITGVSDEVKRIILNYQWPGNVRELQNL 368 Query: 605 IERAVLLTRGNVLQLSLPD------------IVLPEPETPPAATVVALEGEDEYQLIVRV 652 IER L R +++L + E + + E E LI+ Sbjct: 369 IERVTTLKRHGIMELEDLPSRMISDKERVLQSFRMDVENAECIDLKSTVDEFESHLILSA 428 Query: 653 LKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSA 690 L+ AA L + RTTL+ ++K+ G+ + Sbjct: 429 LQRFQW---NKNQAANFLAMNRTTLVEKIKKKGLQPTK 463 >UniRef50_C1ZB08 Sigma-54 interacting regulator n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZB08_PLALI Length = 1098 Score = 512 bits (1319), Expect = e-143, Method: Composition-based stats. Identities = 165/496 (33%), Positives = 257/496 (51%), Gaps = 29/496 (5%) Query: 167 IQSRVVNNVDYELLCRERDNF-RILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISI 225 V + RE+ ++L + AV D + L +A + +I Sbjct: 459 WARDVWQRLVDRRFFREKYQLDKVLQRMNRAVGQLADAESLAQRMAGSCQDVIQAERAAI 518 Query: 226 VLRSHRKNKLNIYSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPY 285 LR R + + + ++ + + + + + RD + P Sbjct: 519 YLREGRSTNFRLIAAEGVWPNV----SMQISTSADFVMTLAAATTLQAVPAASRDSMNPV 574 Query: 286 ERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVD 345 + L D I L + +SG +LG + V++ ++ L + + +A+ Sbjct: 575 QSFLRDLQAELIHALEVEGELSGFVVLG----PRQTNGVYSAEDITFLTAMGQITGVALH 630 Query: 346 NALAYQEIHRLKERLV----------DENLALTEQLNNV----------DSEFGEIIGRS 385 A ++++ RL E L + L L ++N + G I G S Sbjct: 631 CAKVHKDLSRLNEELRLKVDRIEQQKQQILMLQAEINESQEPESPAPVTEFNRGMIRGSS 690 Query: 386 EAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGL 445 +A+ VL+ V A SDS+VLI GE+GTGKEL+A+AIH S R + +V ++CAA+ GL Sbjct: 691 QALMEVLEVVRKAAASDSSVLITGESGTGKELLAQAIHANSPRRDGPLVIVHCAALSTGL 750 Query: 446 LESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERL 505 LES+LFGH +G+FTGA A + GRFELA+ +LFLDE+G++PLE Q KLLRVLQ++ FER+ Sbjct: 751 LESELFGHVKGSFTGAYADKPGRFELANGGTLFLDEIGEIPLETQVKLLRVLQQRTFERV 810 Query: 506 GSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKA 565 GS++ ++ DVR++AAT+++L++ + D FR DLYYRLNV I LP LRER +D+ L + Sbjct: 811 GSSETLRCDVRVVAATHKNLEQAIRDSRFREDLYYRLNVVHIALPALRERKDDLYELFRH 870 Query: 566 FTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIV 625 F + A + G+ + I L L +WPGN+RELENVIERAV+L+ N + L+ Sbjct: 871 FLKQAANKTGKRVFRIDESALAALLAYQWPGNIRELENVIERAVVLSESNTVTLADLPPA 930 Query: 626 LPEPETPPAATVVALE 641 L ET + + Sbjct: 931 LRRLETSAIRRMESAM 946 Score = 57.9 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 3/64 (4%) Query: 623 DIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMK 682 + V + +E QL+++ L++ G AA+ LGL R+T S++K Sbjct: 1036 ESVWETASNETGRFASDMTESEERQLLIKALEQCQG---NKAEAARMLGLPRSTYFSKLK 1092 Query: 683 RLGI 686 + + Sbjct: 1093 KYRL 1096 >UniRef50_B8FZI3 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8FZI3_DESHD Length = 461 Score = 512 bits (1318), Expect = e-143, Method: Composition-based stats. Identities = 140/461 (30%), Positives = 236/461 (51%), Gaps = 26/461 (5%) Query: 250 HEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGD 309 +D+ + E + + +D ++ + I T +P G Sbjct: 5 RHIVIIDDEPDMLETCARVIHRMGYKCTTYEDSCEALEEIYRLQPDLIITDIKMPQCDGF 64 Query: 310 TMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALA----YQEIHRLKER------ 359 +L K+ + +V T + + + + L+ +++ + Sbjct: 65 EVLEKAKVCTPKARVIVITGYASVDSAVQAMKEGAYDYLSKPFPIEQLQLTINKALQHIA 124 Query: 360 LVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIA 419 L +EN L QL IIG + V + + ++ SD+++LILGE+GTGKE+IA Sbjct: 125 LTEENQLLRAQLQEG-LNTDNIIGARGGLQDVFETIGKISNSDASILILGESGTGKEVIA 183 Query: 420 RAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFL 479 RAIH S R+ + ++CA++P LLES+LFG+ERGAFTGA+ + G E+A +LFL Sbjct: 184 RAIHKNSRRSTGPFIPVDCASLPENLLESELFGYERGAFTGANTTKQGLLEMAHGGTLFL 243 Query: 480 DEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLY 539 DE+G++ +Q KLLR L+E+ R+G N++I D+R++AATNRDL+K + +EFR DLY Sbjct: 244 DELGELTPAMQAKLLRTLEERAIRRVGGNRLINIDIRVLAATNRDLEKAIRAKEFREDLY 303 Query: 540 YRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVR 599 YR+NV + LP L ER +DIPLL F K ++ + + + E ++ + + WPGN+R Sbjct: 304 YRINVITLKLPVLHERQQDIPLLVNHFCKKFSQDMNKKVSGFTPEAMQAMKSYAWPGNIR 363 Query: 600 ELENVIERAVLLTRGNVLQLSLPDI--------VLPEPETPPAATVVAL----EGEDEYQ 647 EL NV+ERA+ L+ ++++S +LPE E A + E + Sbjct: 364 ELRNVVERAISLSGSEMVEISDLPEKVIGGQKKILPEQENLGAFSFHEAKDICLKRFEME 423 Query: 648 LIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDK 688 + +L + +G + AA+ G+ R T+ + + + + Sbjct: 424 YLKELLDKHHGNI---TQAAKSAGMDRKTIHRLINKYDLQR 461 >UniRef50_A5G703 Two component, sigma-54 specific, transcriptional regulator, Fis family n=7 Tax=Geobacter RepID=A5G703_GEOUR Length = 453 Score = 512 bits (1318), Expect = e-143, Method: Composition-based stats. Identities = 159/416 (38%), Positives = 229/416 (55%), Gaps = 15/416 (3%) Query: 281 DLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERV 340 D R + + + + +P+ SG + + T + + + Sbjct: 34 DGGEGLRRIRQERFDLVLSDLKMPVKSGLELFRETRQDAAPPLFIFITAFGKVEEAVAAI 93 Query: 341 AIAVDNAL---------AYQEIHRLKERLVDENLALT-EQLNNVDSEFGEIIGRSEAMYS 390 + L + R E + E L ++ + + E+I AM + Sbjct: 94 KEGAFDFLTKPLKDPRSLRDSVKRALESVERERLFISLKDMERSGLPPDELIFSGSAMDA 153 Query: 391 VLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDL 450 V K + VA S +TVLI GE+GTGKEL+AR IH LS R + +NCAA+P LLES+L Sbjct: 154 VRKMIYDVAPSTATVLIHGESGTGKELVARMIHLLSKRKGAAFIPLNCAAIPENLLESEL 213 Query: 451 FGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKI 510 FGHE+GAFTGA R G+FELA+ ++FLDE+G+MP LQ KLLRVLQE+ FER+G + Sbjct: 214 FGHEKGAFTGAMQARRGKFELAEGGTIFLDEIGEMPALLQAKLLRVLQERVFERVGGSMQ 273 Query: 511 IQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKI 570 I+T+VR+IAATNRDL + VA++ FR DL+YRLNVFPI +PPLR R + + LA+ F + Sbjct: 274 IRTNVRVIAATNRDLNREVAEKRFRDDLFYRLNVFPITVPPLRARLDALAGLARYFCARF 333 Query: 571 ARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPE 630 A + G+ + I E LR + WPGN+REL+NVIER V+L R + LP ++ + Sbjct: 334 AVKTGKKLKGINPEALRLMKAYHWPGNIRELQNVIERGVILAREELTAPELPAMI--AGK 391 Query: 631 TPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 V + + E I+ LK G + AA+ LG+ + TL R+K LG+ Sbjct: 392 ETEGGPKVGILKDIERNCILEALKNNRG---NRRMAAETLGISKRTLQYRLKELGL 444 >UniRef50_D2R8T8 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Planctomycetaceae RepID=D2R8T8_9PLAN Length = 457 Score = 511 bits (1317), Expect = e-143, Method: Composition-based stats. Identities = 155/431 (35%), Positives = 218/431 (50%), Gaps = 19/431 (4%) Query: 274 INLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLL 333 + + + D + + + L G +L + + E+ V T + Sbjct: 28 VEVETAASCQEAIAKMRDRAFDIVLSDIRLDDGDGFDVLAFSRKNRPEQSVILLTGYGTV 87 Query: 334 RQIAERVAIAVDNALAYQEIHRL----------KERLVDENLALTEQLNNVDSEFGEIIG 383 E + + L I + ++V+EN+ L QL ++ I+G Sbjct: 88 DTAIEALRAGAFDLLTKPLIDEELLLSIERALSQRKVVEENVQLKAQL-DLRFGLENIVG 146 Query: 384 RSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPA 443 M V VE +A + +TVLI GE+GTGK L+ARAIH R ++ V++ C AMP Sbjct: 147 HEHRMQKVFDMVERIADTRATVLITGESGTGKSLLARAIHRRGSRRDQAFVEVACGAMPE 206 Query: 444 GLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFE 503 LLES+LFGH G+FTGA+ +IG+F ADK ++FLDE+G LQ KLLRVLQE EFE Sbjct: 207 SLLESELFGHAAGSFTGATGDKIGKFTQADKGTIFLDEIGTASASLQVKLLRVLQELEFE 266 Query: 504 RLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLA 563 +GS K + D R+I ATN L++ VA FR DLYYR+NV I +PPLRER DIPLLA Sbjct: 267 PVGSTKTQRVDTRVILATNEKLEQAVAAGRFRQDLYYRVNVINIEVPPLRERIADIPLLA 326 Query: 564 KAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPD 623 F + G+ + + + WPGNVREL+NV+ERAVLL RG +Q+ Sbjct: 327 NHFLQRTCEESGKRSQGFSDDVITAMQRYNWPGNVRELQNVVERAVLLGRGPKVQVEDLT 386 Query: 624 IVLPEP-----ETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLL 678 + + + E +I+ VL+ A LG+ RTTL Sbjct: 387 PAIASGQIVSIDPVGNKALKEALESPERAIILDVLEMHQW---NRNATADALGINRTTLY 443 Query: 679 SRMKRLGIDKS 689 +MKRLG+DK Sbjct: 444 KKMKRLGLDKQ 454 >UniRef50_UPI00016C54BB two component, sigma54 specific, transcriptional regulator, Fis family protein n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C54BB Length = 463 Score = 511 bits (1317), Expect = e-143, Method: Composition-based stats. Identities = 145/463 (31%), Positives = 223/463 (48%), Gaps = 24/463 (5%) Query: 244 DKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLL 303 D+++P + VD+ L + +S D A L + + + + ++ Sbjct: 4 DQRNPRGKLLIVDDEVELMRALCESLTDAGFEARGLSDPALAADALREGEPDVLLSDLMM 63 Query: 304 PLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIA----------VDNALAYQEI 353 P G +L A T ++ E + + L + Sbjct: 64 PGTDGIQLLRRCLEADPHLVGIIMTGQGTIQTAVEAMKAGAFDYVLKPFRLQQVLPVLDR 123 Query: 354 HRLKERLVDENLALTEQLNNVDSEFGE--IIGRSEAMYSVLKQVEMVAQSDSTVLILGET 411 RL EN L + + E I+G A+ V++ +E VA + +TVL+ G + Sbjct: 124 AMEVRRLRRENANLRRYVQRLTFESDRYRIVGSGPAVRKVVQLIEKVAPTTATVLVRGPS 183 Query: 412 GTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFEL 471 GTGKEL+ARA+H S R ++ +V +NCA + LLES+LFGHE+GAFTGA + G FE+ Sbjct: 184 GTGKELVARAVHGNSARRDKPLVTVNCATLQETLLESELFGHEKGAFTGADRPKPGLFEV 243 Query: 472 ADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVAD 531 A+ +LF+DEV +M LQ KLLRVL++ + R+GS + + DVR+IAATN+ L+ Sbjct: 244 AEGGTLFVDEVAEMAPALQAKLLRVLEDGHYRRVGSTQEKRADVRIIAATNKPLEAEQKA 303 Query: 532 REFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSN 591 FR DL++RL+V + LP L++R ED+P L + F R++GR ++ L Sbjct: 304 GRFREDLFFRLSVITVDLPALKDRREDVPELIQHFL--HTRQVGRGPMTVDPAARSLLCR 361 Query: 592 MEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVAL-------EGED 644 +WPGN+REL NV+ERA +L G+V+ L PPAA Sbjct: 362 YDWPGNIRELANVLERAQILAEGSVITPDDLPDNLAAGSGPPAAGEEPAPTTGPDDLDRV 421 Query: 645 EYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGID 687 E + VL G AA+ LG+ R TL + + + Sbjct: 422 ERHHVRDVLHRHGG---NKVQAAKALGVSRRTLYRLIDKYKLS 461 >UniRef50_B8FL05 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FL05_DESAA Length = 453 Score = 511 bits (1316), Expect = e-143, Method: Composition-based stats. Identities = 148/441 (33%), Positives = 235/441 (53%), Gaps = 20/441 (4%) Query: 263 ERVFKSKEMLLINL-----HERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKL 317 E V +S ++ + D + D++ + I + M G +LG +K Sbjct: 16 EPVVRSGISRIVTHMGLKPDDAADGKEAISKMSDSYFDIIFLDVRMQGMGGMEVLGWIKD 75 Query: 318 AQCEEKVFTTTNLNLLRQIAERVAIAVDNALA----YQEIHRLKERLVDENLALTEQL-- 371 V T + I + + + + LA +I + +R + + + Sbjct: 76 NNISSLVVMITGVTEPDIIIQAMKMGAFDYLAKPFGVDDIENIIQRAEKASAPPAQTIGI 135 Query: 372 ---NNVDSEFGEI-IGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSG 427 + + I +G S M ++ ++ VA +D TVLI GE+GTGKEL+ARAIH S Sbjct: 136 PKSKGLQAGPDRIMLGSSPVMQNLFSRMLKVAPTDGTVLITGESGTGKELVARAIHYHSR 195 Query: 428 RNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPL 487 R V ++C+A+ LLES+LFGH +G+FTGA + G FELA+ + F DE+ ++ + Sbjct: 196 RRENEFVPVDCSALVENLLESELFGHVKGSFTGALQSKKGLFELANHGTFFFDEISNLSM 255 Query: 488 ELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPI 547 ++Q KLLRV+QE+EF ++G I+ D+R++ A+NRDL+ +A+ +FR DL+YRL+V PI Sbjct: 256 DIQAKLLRVIQEREFTQVGGAVRIKVDLRIMVASNRDLRAAIAENKFREDLFYRLHVIPI 315 Query: 548 HLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIER 607 HLPPLRER +DI L F ++R++GR + E + L + WPGNVRELEN IER Sbjct: 316 HLPPLRERGKDIEELVNYFVLHMSRKIGREAPKVSREAMDVLLSYAWPGNVRELENTIER 375 Query: 608 AVLLTRGNVLQLSLPDIVLPE--PETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKG 665 ++L V++ + + P+ + + + E I VL TNG + + Sbjct: 376 TLILKDDAVIKPEHLPQDIRQQPPDLRSFSDKMVSLKDLERDYIRFVLSRTNGGI---QK 432 Query: 666 AAQRLGLKRTTLLSRMKRLGI 686 AA LG+ R TL +MK+ G+ Sbjct: 433 AAGILGINRKTLSMKMKKYGL 453 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.312 0.157 0.511 Lambda K H 0.267 0.0481 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,283,122,849 Number of Sequences: 3077464 Number of extensions: 265393161 Number of successful extensions: 695992 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 7966 Number of HSP's successfully gapped in prelim test: 4336 Number of HSP's that attempted gapping in prelim test: 667553 Number of HSP's gapped (non-prelim): 17542 length of query: 692 length of database: 1,040,396,356 effective HSP length: 136 effective length of query: 556 effective length of database: 621,861,252 effective search space: 345754856112 effective search space used: 345754856112 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.1 bits) S2: 97 (41.7 bits)