BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (84 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P0AFW8 Protein rof n=144 Tax=Enterobacteriaceae RepID=R... 174 8e-43 UniRef50_D0KJR0 Transcriptional antiterminator, Rof n=14 Tax=Ent... 129 2e-29 UniRef50_D0FPX3 Rho-binding antiterminator protein n=2 Tax=Erwin... 120 2e-26 UniRef50_Q3KB29 Modulator of Rho-dependent transcription termina... 65 8e-10 UniRef50_C1M505 Transcriptional antiterminator n=1 Tax=Citrobact... 53 2e-06 UniRef50_A9L641 Transcriptional antiterminator, Rof n=8 Tax=Gamm... 51 1e-05 UniRef50_A4STJ9 Modulator of Rho-dependent transcription termina... 46 3e-04 UniRef50_B9ZK57 Transcriptional antiterminator, Rof n=1 Tax=Thio... 44 0.001 UniRef50_A0Y0U5 Putative uncharacterized protein n=1 Tax=Alterom... 44 0.001 UniRef50_B8GPB7 Transcriptional antiterminator, Rof n=1 Tax=Thio... 41 0.011 UniRef50_Q2BPA6 Putative uncharacterized protein n=1 Tax=Neptuni... 40 0.016 UniRef50_Q3SIL6 Transcriptional antiterminator, Rof n=1 Tax=Thio... 40 0.023 UniRef50_Q0A5U7 Transcriptional antiterminator, Rof n=1 Tax=Alka... 40 0.024 >UniRef50_P0AFW8 Protein rof n=144 Tax=Enterobacteriaceae RepID=ROF_ECOLI Length = 84 Score = 174 bits (441), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 84/84 (100%), Positives = 84/84 (100%) Query: 1 MNDTYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVEYLVVEAAGET 60 MNDTYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVEYLVVEAAGET Sbjct: 1 MNDTYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVEYLVVEAAGET 60 Query: 61 RELRLDKITSFSHPEIGTVVVSES 84 RELRLDKITSFSHPEIGTVVVSES Sbjct: 61 RELRLDKITSFSHPEIGTVVVSES 84 >UniRef50_D0KJR0 Transcriptional antiterminator, Rof n=14 Tax=Enterobacteriaceae RepID=D0KJR0_PECWW Length = 86 Score = 129 bits (325), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 58/84 (69%), Positives = 70/84 (83%) Query: 1 MNDTYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVEYLVVEAAGET 60 M++ YQPINCDDYD+LE CQ L LTLEL++GE + KASD++SRK +EYLV+EA+G T Sbjct: 3 MSNEYQPINCDDYDSLEATCQQSLTLTLELRNGEVVTGKASDMISRKQIEYLVIEASGAT 62 Query: 61 RELRLDKITSFSHPEIGTVVVSES 84 RELRLD I SFSHPEIG +VVSES Sbjct: 63 RELRLDHIVSFSHPEIGKIVVSES 86 >UniRef50_D0FPX3 Rho-binding antiterminator protein n=2 Tax=Erwinia pyrifoliae RepID=D0FPX3_ERWPY Length = 87 Score = 120 bits (300), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 54/82 (65%), Positives = 69/82 (84%) Query: 2 NDTYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVEYLVVEAAGETR 61 N+ Y+PINCDDYDNLELACQ+ +LTL LK+ E+L+A+A ++SRKNVEYL ++ AG R Sbjct: 4 NEVYKPINCDDYDNLELACQNKWLLTLVLKNSEQLEARAEGILSRKNVEYLSIQVAGACR 63 Query: 62 ELRLDKITSFSHPEIGTVVVSE 83 +LRLD I SFSHP++GTVVVSE Sbjct: 64 DLRLDHILSFSHPQLGTVVVSE 85 >UniRef50_Q3KB29 Modulator of Rho-dependent transcription termination n=8 Tax=Gammaproteobacteria RepID=Q3KB29_PSEPF Length = 92 Score = 64.7 bits (156), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 34/85 (40%), Positives = 52/85 (61%), Gaps = 5/85 (5%) Query: 5 YQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKA-SDLVSRKNVEYLVVEAAGETREL 63 YQP+NCD YD LE+AC L +EL DG++L AKA + S E+LV+E +E+ Sbjct: 4 YQPLNCDLYDYLEIACLRGYQLDIELIDGQRLMAKAVTTRTSSDKEEFLVIEQQAAQQEI 63 Query: 64 RLDKITSF----SHPEIGTVVVSES 84 RLD++ + ++ E G V+++E Sbjct: 64 RLDQLLAITPQETNAEFGRVILAEG 88 >UniRef50_C1M505 Transcriptional antiterminator n=1 Tax=Citrobacter sp. 30_2 RepID=C1M505_9ENTR Length = 95 Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 1/69 (1%) Query: 5 YQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKA-SDLVSRKNVEYLVVEAAGETREL 63 Y PI+CD +D LE+AC +H L +EL DG AKA + + + E+LVV + +++ Sbjct: 8 YHPIDCDLHDYLEIACMYHYWLRIELTDGTCFDAKALTTCTTVEKEEFLVVGQSENQQKI 67 Query: 64 RLDKITSFS 72 RLD +++ + Sbjct: 68 RLDYLSAIT 76 >UniRef50_A9L641 Transcriptional antiterminator, Rof n=8 Tax=Gammaproteobacteria RepID=A9L641_SHEB9 Length = 90 Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 6/87 (6%) Query: 1 MNDTYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKN-VEYLVVEAAGE 59 M+D Y+ I C+ YD LELAC L +EL DG + Q +A +R + E+LV++ Sbjct: 1 MSD-YKMIPCEHYDYLELACLRGYQLKIELIDGTQCQGQAITTQTRADKTEWLVIQQQQN 59 Query: 60 TRELRLDKITSFS----HPEIGTVVVS 82 + LRLD I + + H E G + ++ Sbjct: 60 KQSLRLDHIVAITPVDVHAEFGRMQIA 86 >UniRef50_A4STJ9 Modulator of Rho-dependent transcription termination n=1 Tax=Aeromonas salmonicida subsp. salmonicida A449 RepID=A4STJ9_AERS4 Length = 84 Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 5/66 (7%) Query: 5 YQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVEYLVVEAA-----GE 59 YQPI+CD YD LE+A L +TL +DG + K + + + VEYL++ + G+ Sbjct: 4 YQPISCDLYDWLEIAASWQLPVTLASRDGHQWDDKIRTIEASEGVEYLLLHSGERLSLGD 63 Query: 60 TRELRL 65 LRL Sbjct: 64 LATLRL 69 >UniRef50_B9ZK57 Transcriptional antiterminator, Rof n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZK57_9GAMM Length = 82 Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 4/71 (5%) Query: 5 YQPINCDDYDNLELACQHHLMLTLELKDGEKLQ---AKASDLVSRKNVEYLVV-EAAGET 60 Y PI C+ Y LELA L + GE + + DL +R+ EYL++ +A G Sbjct: 7 YTPIACERYSELELAILRGQHLRTHWRRGEMDRIAVVRPLDLRTRRGAEYLILRDAEGRR 66 Query: 61 RELRLDKITSF 71 + RLD++ SF Sbjct: 67 QWWRLDRLVSF 77 >UniRef50_A0Y0U5 Putative uncharacterized protein n=1 Tax=Alteromonadales bacterium TW-7 RepID=A0Y0U5_9GAMM Length = 83 Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 5/71 (7%) Query: 8 INCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNV---EYLVVEAAGETRELR 64 I+C+ YD +E+AC HHL + L LK+G+ + A+D+ ++N E + + +GE + + Sbjct: 2 ISCNHYDYIEIACMHHLSIELILKNGDVVCGVAADI--KRNALKQECIAINVSGELKLIV 59 Query: 65 LDKITSFSHPE 75 L+ I+ E Sbjct: 60 LNTISVLKARE 70 >UniRef50_B8GPB7 Transcriptional antiterminator, Rof n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GPB7_THISH Length = 82 Score = 41.2 bits (95), Expect = 0.011, Method: Compositional matrix adjust. Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 5/73 (6%) Query: 1 MNDTYQPINCDDYDNLELACQHHLMLTLELKDGEKLQA----KASDLVSRKNVEYLVVE- 55 M Y PI+C+ Y ELA L + KD + + +DL +R++ E+++ Sbjct: 1 MTSDYTPISCELYSEYELAIMRGRTLKVRWKDRYGMDRVETLRPTDLRTRRHAEFMIARN 60 Query: 56 AAGETRELRLDKI 68 G+ R LRLD+I Sbjct: 61 QLGQRRVLRLDRI 73 >UniRef50_Q2BPA6 Putative uncharacterized protein n=1 Tax=Neptuniibacter caesariensis RepID=Q2BPA6_9GAMM Length = 80 Score = 40.4 bits (93), Expect = 0.016, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 4/70 (5%) Query: 5 YQPINCDDYDNLELACQHHLMLTLELKDGEKLQA---KASDLVSRKNVEYLVVE-AAGET 60 Y PINC+ +D ELAC + +E D K + + DL K E+L+ E E Sbjct: 7 YTPINCEIHDGYELACMRKAIHNVEWIDQGKTHSEKLRFLDLEYSKKGEFLIAENEQKEP 66 Query: 61 RELRLDKITS 70 R++RLD I S Sbjct: 67 RKIRLDSIFS 76 >UniRef50_Q3SIL6 Transcriptional antiterminator, Rof n=1 Tax=Thiobacillus denitrificans ATCC 25259 RepID=Q3SIL6_THIDA Length = 75 Score = 40.0 bits (92), Expect = 0.023, Method: Compositional matrix adjust. Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 3/70 (4%) Query: 1 MNDT-YQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVEYLVVEA-AG 58 M++T Y PI C ++ LE A L +++ DG+K + + D+ +R+ E+L E G Sbjct: 1 MSETPYAPIPCAQHERLEFAALTGQWLEVKI-DGQKQRLRPLDVYTREGAEWLRAETDGG 59 Query: 59 ETRELRLDKI 68 E LRLD++ Sbjct: 60 EALTLRLDRL 69 >UniRef50_Q0A5U7 Transcriptional antiterminator, Rof n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0A5U7_ALHEH Length = 83 Score = 40.0 bits (92), Expect = 0.024, Method: Compositional matrix adjust. Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 4/74 (5%) Query: 2 NDTYQPINCDDYDNLELACQH--HLMLTLELKDGEKLQAK-ASDLVSRKNVEYLVVE-AA 57 ND Y+PI+C+ Y LEL H L + G+ + DL +R EYLV Sbjct: 7 NDDYRPISCERYAELELHIMHARRLRVAWRTPQGQHIDTLIPEDLHTRDGAEYLVARNRL 66 Query: 58 GETRELRLDKITSF 71 GE +RLD++ F Sbjct: 67 GEAFIIRLDQLQRF 80 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P0AFW8 Protein rof n=144 Tax=Enterobacteriaceae RepID=R... 123 1e-27 UniRef50_D0KJR0 Transcriptional antiterminator, Rof n=14 Tax=Ent... 118 7e-26 UniRef50_D0FPX3 Rho-binding antiterminator protein n=2 Tax=Erwin... 114 1e-24 UniRef50_A9L641 Transcriptional antiterminator, Rof n=8 Tax=Gamm... 97 1e-19 UniRef50_Q3KB29 Modulator of Rho-dependent transcription termina... 95 6e-19 UniRef50_C1M505 Transcriptional antiterminator n=1 Tax=Citrobact... 94 1e-18 UniRef50_B9ZK57 Transcriptional antiterminator, Rof n=1 Tax=Thio... 82 4e-15 UniRef50_A0Y0U5 Putative uncharacterized protein n=1 Tax=Alterom... 77 2e-13 UniRef50_A4STJ9 Modulator of Rho-dependent transcription termina... 76 4e-13 Sequences not found previously or not previously below threshold: UniRef50_A3Q9J2 Transcriptional antiterminator, Rof n=7 Tax=Shew... 58 9e-08 UniRef50_B8GPB7 Transcriptional antiterminator, Rof n=1 Tax=Thio... 57 2e-07 UniRef50_A3Y5G8 Putative uncharacterized protein n=1 Tax=Marinom... 55 1e-06 UniRef50_Q0AJD0 Transcriptional antiterminator, Rof n=2 Tax=Nitr... 54 2e-06 UniRef50_C3NZ10 Transcriptional antiterminator n=31 Tax=Vibrio R... 52 7e-06 UniRef50_Q3SIL6 Transcriptional antiterminator, Rof n=1 Tax=Thio... 51 1e-05 UniRef50_Q0A5U7 Transcriptional antiterminator, Rof n=1 Tax=Alka... 51 1e-05 UniRef50_Q8D5E4 Transcriptional antiterminator n=2 Tax=Vibrio vu... 50 2e-05 UniRef50_UPI0001AEC500 hypothetical protein AmacA2_18706 n=1 Tax... 50 2e-05 UniRef50_B5EMC6 Transcriptional antiterminator, Rof n=2 Tax=Acid... 50 2e-05 UniRef50_Q2C9D0 Transcriptional antiterminator n=2 Tax=Photobact... 49 4e-05 UniRef50_C9NTU8 Transcriptional antiterminator n=1 Tax=Vibrio co... 48 6e-05 UniRef50_B1KQ80 Transcriptional antiterminator, Rof n=1 Tax=Shew... 48 7e-05 UniRef50_A4BCS7 Putative uncharacterized protein n=1 Tax=Reineke... 48 1e-04 UniRef50_A4CFB2 Putative uncharacterized protein n=1 Tax=Pseudoa... 47 1e-04 UniRef50_A7JY17 Transcriptional antiterminator n=8 Tax=Vibrio Re... 47 1e-04 UniRef50_Q2BPA6 Putative uncharacterized protein n=1 Tax=Neptuni... 47 2e-04 UniRef50_C6MBY6 Transcriptional antiterminator, Rof n=1 Tax=Nitr... 47 2e-04 UniRef50_B3PH51 Modulator of Rho-dependent transcription termina... 45 5e-04 UniRef50_C9PFC4 Transcriptional antiterminator n=1 Tax=Vibrio fu... 45 6e-04 UniRef50_B0TMP4 Transcriptional antiterminator, Rof n=9 Tax=Gamm... 44 0.001 UniRef50_Q15V95 Transcriptional antiterminator, Rof n=1 Tax=Pseu... 44 0.001 UniRef50_Q1N2D2 Putative uncharacterized protein n=1 Tax=Bermane... 44 0.002 UniRef50_Q47UI2 Putative uncharacterized protein n=1 Tax=Colwell... 44 0.002 UniRef50_D1KE28 Putative uncharacterized protein n=1 Tax=uncultu... 43 0.002 UniRef50_Q081B6 Transcriptional antiterminator, Rof n=1 Tax=Shew... 42 0.006 UniRef50_C7PBT9 Putative uncharacterized protein n=1 Tax=Chitino... 40 0.018 UniRef50_A1ZYH1 Putative uncharacterized protein n=1 Tax=Microsc... 40 0.034 UniRef50_A8H694 Transcriptional antiterminator, Rof n=1 Tax=Shew... 39 0.051 UniRef50_C6NSC5 Transcriptional antiterminator, Rof n=1 Tax=Acid... 38 0.082 UniRef50_B9TIC6 Putative uncharacterized protein n=1 Tax=Ricinus... 38 0.084 >UniRef50_P0AFW8 Protein rof n=144 Tax=Enterobacteriaceae RepID=ROF_ECOLI Length = 84 Score = 123 bits (310), Expect = 1e-27, Method: Composition-based stats. Identities = 84/84 (100%), Positives = 84/84 (100%) Query: 1 MNDTYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVEYLVVEAAGET 60 MNDTYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVEYLVVEAAGET Sbjct: 1 MNDTYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVEYLVVEAAGET 60 Query: 61 RELRLDKITSFSHPEIGTVVVSES 84 RELRLDKITSFSHPEIGTVVVSES Sbjct: 61 RELRLDKITSFSHPEIGTVVVSES 84 >UniRef50_D0KJR0 Transcriptional antiterminator, Rof n=14 Tax=Enterobacteriaceae RepID=D0KJR0_PECWW Length = 86 Score = 118 bits (295), Expect = 7e-26, Method: Composition-based stats. Identities = 58/84 (69%), Positives = 70/84 (83%) Query: 1 MNDTYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVEYLVVEAAGET 60 M++ YQPINCDDYD+LE CQ L LTLEL++GE + KASD++SRK +EYLV+EA+G T Sbjct: 3 MSNEYQPINCDDYDSLEATCQQSLTLTLELRNGEVVTGKASDMISRKQIEYLVIEASGAT 62 Query: 61 RELRLDKITSFSHPEIGTVVVSES 84 RELRLD I SFSHPEIG +VVSES Sbjct: 63 RELRLDHIVSFSHPEIGKIVVSES 86 >UniRef50_D0FPX3 Rho-binding antiterminator protein n=2 Tax=Erwinia pyrifoliae RepID=D0FPX3_ERWPY Length = 87 Score = 114 bits (285), Expect = 1e-24, Method: Composition-based stats. Identities = 54/82 (65%), Positives = 69/82 (84%) Query: 2 NDTYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVEYLVVEAAGETR 61 N+ Y+PINCDDYDNLELACQ+ +LTL LK+ E+L+A+A ++SRKNVEYL ++ AG R Sbjct: 4 NEVYKPINCDDYDNLELACQNKWLLTLVLKNSEQLEARAEGILSRKNVEYLSIQVAGACR 63 Query: 62 ELRLDKITSFSHPEIGTVVVSE 83 +LRLD I SFSHP++GTVVVSE Sbjct: 64 DLRLDHILSFSHPQLGTVVVSE 85 >UniRef50_A9L641 Transcriptional antiterminator, Rof n=8 Tax=Gammaproteobacteria RepID=A9L641_SHEB9 Length = 90 Score = 97.4 bits (241), Expect = 1e-19, Method: Composition-based stats. Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 6/87 (6%) Query: 1 MNDTYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSR-KNVEYLVVEAAGE 59 M+D Y+ I C+ YD LELAC L +EL DG + Q +A +R E+LV++ Sbjct: 1 MSD-YKMIPCEHYDYLELACLRGYQLKIELIDGTQCQGQAITTQTRADKTEWLVIQQQQN 59 Query: 60 TRELRLDKITSFS----HPEIGTVVVS 82 + LRLD I + + H E G + ++ Sbjct: 60 KQSLRLDHIVAITPVDVHAEFGRMQIA 86 >UniRef50_Q3KB29 Modulator of Rho-dependent transcription termination n=8 Tax=Gammaproteobacteria RepID=Q3KB29_PSEPF Length = 92 Score = 95.1 bits (235), Expect = 6e-19, Method: Composition-based stats. Identities = 34/85 (40%), Positives = 52/85 (61%), Gaps = 5/85 (5%) Query: 5 YQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKA-SDLVSRKNVEYLVVEAAGETREL 63 YQP+NCD YD LE+AC L +EL DG++L AKA + S E+LV+E +E+ Sbjct: 4 YQPLNCDLYDYLEIACLRGYQLDIELIDGQRLMAKAVTTRTSSDKEEFLVIEQQAAQQEI 63 Query: 64 RLDKITSF----SHPEIGTVVVSES 84 RLD++ + ++ E G V+++E Sbjct: 64 RLDQLLAITPQETNAEFGRVILAEG 88 >UniRef50_C1M505 Transcriptional antiterminator n=1 Tax=Citrobacter sp. 30_2 RepID=C1M505_9ENTR Length = 95 Score = 93.9 bits (232), Expect = 1e-18, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 44/73 (60%), Gaps = 1/73 (1%) Query: 2 NDTYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKA-SDLVSRKNVEYLVVEAAGET 60 + Y PI+CD +D LE+AC +H L +EL DG AKA + + + E+LVV + Sbjct: 5 TEEYHPIDCDLHDYLEIACMYHYWLRIELTDGTCFDAKALTTCTTVEKEEFLVVGQSENQ 64 Query: 61 RELRLDKITSFSH 73 +++RLD +++ + Sbjct: 65 QKIRLDYLSAITA 77 >UniRef50_B9ZK57 Transcriptional antiterminator, Rof n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZK57_9GAMM Length = 82 Score = 82.4 bits (202), Expect = 4e-15, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 4/71 (5%) Query: 5 YQPINCDDYDNLELACQHHLMLTLELKDGEKLQ---AKASDLVSRKNVEYLVV-EAAGET 60 Y PI C+ Y LELA L + GE + + DL +R+ EYL++ +A G Sbjct: 7 YTPIACERYSELELAILRGQHLRTHWRRGEMDRIAVVRPLDLRTRRGAEYLILRDAEGRR 66 Query: 61 RELRLDKITSF 71 + RLD++ SF Sbjct: 67 QWWRLDRLVSF 77 >UniRef50_A0Y0U5 Putative uncharacterized protein n=1 Tax=Alteromonadales bacterium TW-7 RepID=A0Y0U5_9GAMM Length = 83 Score = 76.6 bits (187), Expect = 2e-13, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 1/70 (1%) Query: 7 PINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRK-NVEYLVVEAAGETRELRL 65 I+C+ YD +E+AC HHL + L LK+G+ + A+D+ E + + +GE + + L Sbjct: 1 MISCNHYDYIEIACMHHLSIELILKNGDVVCGVAADIKRNALKQECIAINVSGELKLIVL 60 Query: 66 DKITSFSHPE 75 + I+ E Sbjct: 61 NTISVLKARE 70 >UniRef50_A4STJ9 Modulator of Rho-dependent transcription termination n=1 Tax=Aeromonas salmonicida subsp. salmonicida A449 RepID=A4STJ9_AERS4 Length = 84 Score = 75.8 bits (185), Expect = 4e-13, Method: Composition-based stats. Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 5/66 (7%) Query: 5 YQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVEYLVVEAA-----GE 59 YQPI+CD YD LE+A L +TL +DG + K + + + VEYL++ + G+ Sbjct: 4 YQPISCDLYDWLEIAASWQLPVTLASRDGHQWDDKIRTIEASEGVEYLLLHSGERLSLGD 63 Query: 60 TRELRL 65 LRL Sbjct: 64 LATLRL 69 >UniRef50_A3Q9J2 Transcriptional antiterminator, Rof n=7 Tax=Shewanella RepID=A3Q9J2_SHELP Length = 93 Score = 58.1 bits (139), Expect = 9e-08, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 4/82 (4%) Query: 5 YQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVEYLVVEAAGETRELR 64 Y+ I+C +D+LELAC L +E GE + EYL V + +R Sbjct: 4 YRIIDCHVHDHLELACIRGYQLLIETSTGEMRATAITLTTQADKSEYLTVRNEAGEQAIR 63 Query: 65 LDKITSFS----HPEIGTVVVS 82 LD I + + VV++ Sbjct: 64 LDHIQAITPLTQGAAFDRVVIA 85 >UniRef50_B8GPB7 Transcriptional antiterminator, Rof n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GPB7_THISH Length = 82 Score = 56.6 bits (135), Expect = 2e-07, Method: Composition-based stats. Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 5/74 (6%) Query: 1 MNDTYQPINCDDYDNLELACQHHLMLTLELKD----GEKLQAKASDLVSRKNVEYLVV-E 55 M Y PI+C+ Y ELA L + KD + +DL +R++ E+++ Sbjct: 1 MTSDYTPISCELYSEYELAIMRGRTLKVRWKDRYGMDRVETLRPTDLRTRRHAEFMIARN 60 Query: 56 AAGETRELRLDKIT 69 G+ R LRLD+I Sbjct: 61 QLGQRRVLRLDRIV 74 >UniRef50_A3Y5G8 Putative uncharacterized protein n=1 Tax=Marinomonas sp. MED121 RepID=A3Y5G8_9GAMM Length = 83 Score = 54.6 bits (130), Expect = 1e-06, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 38/70 (54%), Gaps = 1/70 (1%) Query: 7 PINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVE-YLVVEAAGETRELRL 65 + C+ +D +ELAC + + L L++G++++ +A D + + E L ++ E + + L Sbjct: 3 MMTCEQHDYIELACVYLYEINLTLRNGDQVKGQALDTLYNDDKEACLCIKQGEEVKLVVL 62 Query: 66 DKITSFSHPE 75 D+I + Sbjct: 63 DQIVGMRACQ 72 >UniRef50_Q0AJD0 Transcriptional antiterminator, Rof n=2 Tax=Nitrosomonas RepID=Q0AJD0_NITEC Length = 89 Score = 53.9 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 5/84 (5%) Query: 6 QPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVS-RKNVEYLVVEA---AGETR 61 Q I+CD +D +E+AC + + L LKD + KA D+++ + E+L++E + + Sbjct: 3 QHISCDLHDYIEVACMYGYQVRLILKDQSTAEGKAKDILTDTETREFLLLETEIGSQQVE 62 Query: 62 ELRLDKITSFS-HPEIGTVVVSES 84 + LDK+ + VV S S Sbjct: 63 LIFLDKLQVLTPDARFTEVVFSGS 86 >UniRef50_C3NZ10 Transcriptional antiterminator n=31 Tax=Vibrio RepID=C3NZ10_VIBCJ Length = 81 Score = 51.9 bits (123), Expect = 7e-06, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 1/68 (1%) Query: 7 PINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDL-VSRKNVEYLVVEAAGETRELRL 65 ++C YD +ELAC HL + L +K GE A+D + + E + + ET L Sbjct: 1 MVSCSQYDYIELACLFHLPVKLTMKSGEVYYGVAADTQRNSQKQECIALRGEEETWLLET 60 Query: 66 DKITSFSH 73 D+++S Sbjct: 61 DQLSSMEA 68 >UniRef50_Q3SIL6 Transcriptional antiterminator, Rof n=1 Tax=Thiobacillus denitrificans ATCC 25259 RepID=Q3SIL6_THIDA Length = 75 Score = 51.2 bits (121), Expect = 1e-05, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 3/71 (4%) Query: 1 MNDT-YQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVEYLVVEA-AG 58 M++T Y PI C ++ LE A L ++ DG+K + + D+ +R+ E+L E G Sbjct: 1 MSETPYAPIPCAQHERLEFAALTGQWLEVK-IDGQKQRLRPLDVYTREGAEWLRAETDGG 59 Query: 59 ETRELRLDKIT 69 E LRLD++ Sbjct: 60 EALTLRLDRLV 70 >UniRef50_Q0A5U7 Transcriptional antiterminator, Rof n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0A5U7_ALHEH Length = 83 Score = 51.2 bits (121), Expect = 1e-05, Method: Composition-based stats. Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 4/74 (5%) Query: 2 NDTYQPINCDDYDNLELACQHHLMLTLELKD---GEKLQAKASDLVSRKNVEYLVV-EAA 57 ND Y+PI+C+ Y LEL H L + + DL +R EYLV Sbjct: 7 NDDYRPISCERYAELELHIMHARRLRVAWRTPQGQHIDTLIPEDLHTRDGAEYLVARNRL 66 Query: 58 GETRELRLDKITSF 71 GE +RLD++ F Sbjct: 67 GEAFIIRLDQLQRF 80 >UniRef50_Q8D5E4 Transcriptional antiterminator n=2 Tax=Vibrio vulnificus RepID=Q8D5E4_VIBVU Length = 82 Score = 50.0 bits (118), Expect = 2e-05, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 1/68 (1%) Query: 7 PINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRK-NVEYLVVEAAGETRELRL 65 I+C+ YD LE+AC + + + L LKDG ++ + + E L VE G+ + Sbjct: 1 MISCNQYDYLEIACLYRIGVCLTLKDGSEISGVPVNTGFNEHKQECLEVETGGDALWVPT 60 Query: 66 DKITSFSH 73 D I + Sbjct: 61 DMILTMQA 68 >UniRef50_UPI0001AEC500 hypothetical protein AmacA2_18706 n=1 Tax=Alteromonas macleodii ATCC 27126 RepID=UPI0001AEC500 Length = 84 Score = 50.0 bits (118), Expect = 2e-05, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 4/70 (5%) Query: 8 INCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKN----VEYLVVEAAGETREL 63 I C YD +E+AC + L +++ LKDG ++ A V K E + + T+ + Sbjct: 3 IACQLYDYIEIACMYGLEVSVVLKDGNTVKGTALTTVIDKRNDVATECIQMSIDKTTQNI 62 Query: 64 RLDKITSFSH 73 L++I Sbjct: 63 ALNEIAQLDA 72 >UniRef50_B5EMC6 Transcriptional antiterminator, Rof n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5EMC6_ACIF5 Length = 77 Score = 50.0 bits (118), Expect = 2e-05, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 30/68 (44%) Query: 1 MNDTYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVEYLVVEAAGET 60 M+ Y+PI+C+ + LELA L + DG D+ + + E+L + Sbjct: 1 MHSAYKPISCELHSALELAAMRRRPARLHMTDGSWQDGIILDVWTEQGREWLCLRRLDGD 60 Query: 61 RELRLDKI 68 E+ L I Sbjct: 61 VEIDLTHI 68 >UniRef50_Q2C9D0 Transcriptional antiterminator n=2 Tax=Photobacterium RepID=Q2C9D0_9GAMM Length = 80 Score = 49.2 bits (116), Expect = 4e-05, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 1/68 (1%) Query: 7 PINCDDYDNLELACQHHLMLTLELKDGEKLQAKASD-LVSRKNVEYLVVEAAGETRELRL 65 I+C +D +E+AC HL ++L ++GE++ A D + E + ++ + L Sbjct: 1 MISCHQHDYIEIACMLHLDVSLTYRNGERISGIAQDTCYNAHREECIELKINNTVSRIVL 60 Query: 66 DKITSFSH 73 D + S Sbjct: 61 DHLASMQA 68 >UniRef50_C9NTU8 Transcriptional antiterminator n=1 Tax=Vibrio coralliilyticus ATCC BAA-450 RepID=C9NTU8_9VIBR Length = 84 Score = 48.5 bits (114), Expect = 6e-05, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 2/57 (3%) Query: 7 PINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLV--SRKNVEYLVVEAAGETR 61 I+C+ YD +E+AC +H+ + L + G+ ++ KA S + ++ A GET+ Sbjct: 1 MISCNQYDYIEIACLYHIPVRLVTESGQIVEGKAMTTSYDSHRRESIVIATATGETQ 57 >UniRef50_B1KQ80 Transcriptional antiterminator, Rof n=1 Tax=Shewanella woodyi ATCC 51908 RepID=B1KQ80_SHEWM Length = 81 Score = 48.5 bits (114), Expect = 7e-05, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 1/68 (1%) Query: 7 PINCDDYDNLELACQHHLMLTLELKDGEKLQAKA-SDLVSRKNVEYLVVEAAGETRELRL 65 I CD YD +E+AC + + + L L GE+++ A + ++ E+LV++ ET + L Sbjct: 1 MIKCDIYDYIEVACLYKIEVLLTLHSGEEVKGVADTTSINGDKQEFLVIKQGTETLNIEL 60 Query: 66 DKITSFSH 73 I + Sbjct: 61 VSIKNMKA 68 >UniRef50_A4BCS7 Putative uncharacterized protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BCS7_9GAMM Length = 93 Score = 47.7 bits (112), Expect = 1e-04, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 35/71 (49%) Query: 8 INCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVEYLVVEAAGETRELRLDK 67 + CD D+ E C L + + L +G +L A L + +E L +++ + L++ Sbjct: 6 LRCDLQDHFEHVCVLQLPVRVRLTNGTRLAGTADTLRVVQGLESLQLQSQRGIELVPLNE 65 Query: 68 ITSFSHPEIGT 78 I + S+P+ G Sbjct: 66 IATLSYPQAGQ 76 >UniRef50_A4CFB2 Putative uncharacterized protein n=1 Tax=Pseudoalteromonas tunicata D2 RepID=A4CFB2_9GAMM Length = 82 Score = 47.3 bits (111), Expect = 1e-04, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 4/70 (5%) Query: 8 INCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRK----NVEYLVVEAAGETREL 63 ++C D+D +E+AC + L + L + ++ + A R+ E L+++ + E+ Sbjct: 1 MDCADHDFIEVACLYQYRLKISLCNNQQKEGIALTTQVRQQGVLKAELLIIQTSAGNEEI 60 Query: 64 RLDKITSFSH 73 LD+I Sbjct: 61 VLDEIKQIEA 70 >UniRef50_A7JY17 Transcriptional antiterminator n=8 Tax=Vibrio RepID=A7JY17_VIBSE Length = 81 Score = 47.3 bits (111), Expect = 1e-04, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 1/68 (1%) Query: 7 PINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDL-VSRKNVEYLVVEAAGETRELRL 65 + C YD +E+AC L + + LK+GE Q A D + E L ++ GE Sbjct: 1 MVTCSQYDFIEIACMFKLPIEITLKNGETHQGNAFDTGYDMQRQECLFLDMDGEHTAFPT 60 Query: 66 DKITSFSH 73 +++ + Sbjct: 61 EQLVAMRA 68 >UniRef50_Q2BPA6 Putative uncharacterized protein n=1 Tax=Neptuniibacter caesariensis RepID=Q2BPA6_9GAMM Length = 80 Score = 46.9 bits (110), Expect = 2e-04, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 4/72 (5%) Query: 3 DTYQPINCDDYDNLELACQHHLMLTLELKD---GEKLQAKASDLVSRKNVEYLVVEAAG- 58 Y PINC+ +D ELAC + +E D + + DL K E+L+ E Sbjct: 5 QQYTPINCEIHDGYELACMRKAIHNVEWIDQGKTHSEKLRFLDLEYSKKGEFLIAENEQK 64 Query: 59 ETRELRLDKITS 70 E R++RLD I S Sbjct: 65 EPRKIRLDSIFS 76 >UniRef50_C6MBY6 Transcriptional antiterminator, Rof n=1 Tax=Nitrosomonas sp. AL212 RepID=C6MBY6_9PROT Length = 84 Score = 46.9 bits (110), Expect = 2e-04, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 2/65 (3%) Query: 8 INCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSR-KNVEYLVVEAAGETRELRLD 66 I+C+ +D +E+AC + L L LK+ ++ A D+V+ + E LV++ + + L Sbjct: 6 ISCEQHDFVEVACMYRYRLRLVLKNRLIIEGIAIDIVNSPEKQECLVIDNDSRVQ-IELT 64 Query: 67 KITSF 71 ++ S Sbjct: 65 QLVSM 69 >UniRef50_B3PH51 Modulator of Rho-dependent transcription termination (ROF) superfamily n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PH51_CELJU Length = 81 Score = 45.4 bits (106), Expect = 5e-04, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 5/79 (6%) Query: 7 PINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKN-VEYLVVEAAGETRELRL 65 I+CD +D +E+ C +H + L L G ++ A D E + + + + L Sbjct: 1 MIHCDQHDYIEIVCLYHYPIRLTLTSGATIEGIAQDTQHNDQREECIKLSTDTGEQLVVL 60 Query: 66 DKI----TSFSHPEIGTVV 80 ++ +P + VV Sbjct: 61 SELKQLDVLVENPHVERVV 79 >UniRef50_C9PFC4 Transcriptional antiterminator n=1 Tax=Vibrio furnissii CIP 102972 RepID=C9PFC4_VIBFU Length = 83 Score = 45.4 bits (106), Expect = 6e-04, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%) Query: 7 PINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDL-VSRKNVEYLVVEAAGETREL 63 I+C YD +ELAC + + + L +G+ +Q A + + E LV++ A R + Sbjct: 1 MISCSQYDAIELACVYQFPVAVTLLNGDVVQGIAKGTGYNAERQECLVLQQAECERWV 58 >UniRef50_B0TMP4 Transcriptional antiterminator, Rof n=9 Tax=Gammaproteobacteria RepID=B0TMP4_SHEHH Length = 100 Score = 44.2 bits (103), Expect = 0.001, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%) Query: 7 PINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDL-VSRKNVEYLVV 54 I+C+ YD +E+ C + + L+LK GE + A D K E + + Sbjct: 1 MISCNQYDYIEIVCLYRYPIALKLKSGETISGIALDTARDSKKRECIKL 49 >UniRef50_Q15V95 Transcriptional antiterminator, Rof n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15V95_PSEA6 Length = 90 Score = 44.2 bits (103), Expect = 0.001, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 42/82 (51%), Gaps = 5/82 (6%) Query: 8 INCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLV-SRKNVEYLVVEAAGETRELRLD 66 + C + D +ELAC ++ + L L+DG +++ A D +++ E +V+ +A + L+ Sbjct: 1 MKCAEQDYIELACLFNMPILLRLRDGSEIKGTAKDTSYNKQKQECIVLHSAEGECSIALN 60 Query: 67 KITSF----SHPEIGTVVVSES 84 I ++P + S+S Sbjct: 61 LIALMQAQHANPHFSEIRFSKS 82 >UniRef50_Q1N2D2 Putative uncharacterized protein n=1 Tax=Bermanella marisrubri RepID=Q1N2D2_9GAMM Length = 81 Score = 43.9 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 36/78 (46%), Gaps = 5/78 (6%) Query: 7 PINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLV-SRKNVEYLVVEAAGETRELRL 65 + C +D +E+AC + + + LEL+ GE ++ A D ++ +++ + + + Sbjct: 1 MVTCAQHDYIEIACLYQISVCLELEHGEFVKGIALDTAYDQQKRHCILINTDEGDQWIPI 60 Query: 66 DKITSF----SHPEIGTV 79 D + + +P + Sbjct: 61 DSLCAMHAMSKNPHFSEI 78 >UniRef50_Q47UI2 Putative uncharacterized protein n=1 Tax=Colwellia psychrerythraea 34H RepID=Q47UI2_COLP3 Length = 84 Score = 43.9 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 32/66 (48%) Query: 8 INCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVEYLVVEAAGETRELRLDK 67 I+CD +D E+ C ++ + KD + A+D+ + EYL + +T +L L + Sbjct: 5 ISCDAHDYFEIVCMRRSLIKVTSKDNKIYHGIATDIKLVEKQEYLQISDDIKTEQLLLSE 64 Query: 68 ITSFSH 73 + + Sbjct: 65 VKTLEA 70 >UniRef50_D1KE28 Putative uncharacterized protein n=1 Tax=uncultured SUP05 cluster bacterium RepID=D1KE28_9GAMM Length = 71 Score = 43.5 bits (101), Expect = 0.002, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 3/70 (4%) Query: 1 MNDTYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVEYLV-VEAAGE 59 M+D YQ I+C+ + ELA + + + +G+ + D+VS+ E+L+ ++ Sbjct: 1 MSD-YQRISCEAHSVYELAIMRNQSIEVT-INGKPQTIQPQDIVSKSGEEFLIFLDKEDT 58 Query: 60 TRELRLDKIT 69 +ELR D+I Sbjct: 59 RKELRADQII 68 >UniRef50_Q081B6 Transcriptional antiterminator, Rof n=1 Tax=Shewanella frigidimarina NCIMB 400 RepID=Q081B6_SHEFN Length = 88 Score = 41.9 bits (97), Expect = 0.006, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 5/70 (7%) Query: 7 PINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDL----VSRKNVEYLV-VEAAGETR 61 PI C+ YD +E+ C + + L L DG +Q + + +++ E + + + Sbjct: 3 PIKCEIYDYIEIICLYRYRVKLTLTDGTHIQGQFDRILYVNRNQQKHEAIAGINQQQQAI 62 Query: 62 ELRLDKITSF 71 E+ L ITS Sbjct: 63 EVILTYITSI 72 >UniRef50_C7PBT9 Putative uncharacterized protein n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PBT9_CHIPD Length = 84 Score = 40.4 bits (93), Expect = 0.018, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 7/76 (9%) Query: 2 NDTYQPINCDDYDNLELACQHHLMLTLELKDGE----KLQAKASDLVSRKNVEYLVVEAA 57 N+ YQPI+C+ YD LE + + +D E + A+ D+ + VEY+ ++ Sbjct: 5 NNPYQPIDCNYYDRLEAWATMRTICQIIFRDEEGKEQDVTARIEDVYALNKVEYMRMDNG 64 Query: 58 GETRELRLDKITSFSH 73 +RLD + S ++ Sbjct: 65 ---LVIRLDSLLSVNN 77 >UniRef50_A1ZYH1 Putative uncharacterized protein n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZYH1_9SPHI Length = 84 Score = 39.6 bits (91), Expect = 0.034, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 7/76 (9%) Query: 5 YQPINCDDYDNLELACQHHLMLTLELKDGEKLQA----KASDLVSRKNVEYLVVEAAGET 60 Y PINC YD LE + D + +A DL + VEY+ Sbjct: 7 YNPINCSLYDYLEAWAVTQTPCKVTYLDAQNKEAYFTKTIVDLYIKDKVEYVKWNDG--- 63 Query: 61 RELRLDKITSFSHPEI 76 LRLD++ + Sbjct: 64 SSLRLDQLIEINGVRF 79 >UniRef50_A8H694 Transcriptional antiterminator, Rof n=1 Tax=Shewanella pealeana ATCC 700345 RepID=A8H694_SHEPA Length = 102 Score = 38.8 bits (89), Expect = 0.051, Method: Composition-based stats. Identities = 11/37 (29%), Positives = 21/37 (56%) Query: 7 PINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDL 43 ++C +D +EL C + + L +K+G+ + KA D Sbjct: 1 MLSCSQHDYIELVCIFNYPIKLTMKNGDSISGKALDT 37 >UniRef50_C6NSC5 Transcriptional antiterminator, Rof n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NSC5_9GAMM Length = 75 Score = 38.1 bits (87), Expect = 0.082, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 31/60 (51%) Query: 5 YQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVEYLVVEAAGETRELR 64 Y PI C + LELA + L+L+DG +L+ +D+ + K EYL + + ++ Sbjct: 7 YIPIGCALHSELELAAIQRRRVRLQLRDGRELRGIIADVWTEKGREYLRLRSEDGKEQVV 66 >UniRef50_B9TIC6 Putative uncharacterized protein n=1 Tax=Ricinus communis RepID=B9TIC6_RICCO Length = 78 Score = 38.1 bits (87), Expect = 0.084, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 7/80 (8%) Query: 1 MNDTYQPINCDDYDN-LELACQHH-LMLTLELKDGEKLQ--AKASDLVSRKNVEYLVVEA 56 M+ Y PI+C+ +D L LA LT+ DG D+ + VEYL + Sbjct: 1 MDQPYIPIDCERHDELLALATLRRPCTLTVARPDGTLDNLAGVIEDVYADTGVEYLRLRG 60 Query: 57 AGETRELRLDKITSFSHPEI 76 +RLD I + + Sbjct: 61 G---PTVRLDWIRALNGRPF 77 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P0AFW8 Protein rof n=144 Tax=Enterobacteriaceae RepID=R... 112 5e-24 UniRef50_D0KJR0 Transcriptional antiterminator, Rof n=14 Tax=Ent... 106 2e-22 UniRef50_D0FPX3 Rho-binding antiterminator protein n=2 Tax=Erwin... 99 2e-20 UniRef50_A9L641 Transcriptional antiterminator, Rof n=8 Tax=Gamm... 94 1e-18 UniRef50_C1M505 Transcriptional antiterminator n=1 Tax=Citrobact... 91 8e-18 UniRef50_Q3KB29 Modulator of Rho-dependent transcription termina... 90 3e-17 UniRef50_Q8D5E4 Transcriptional antiterminator n=2 Tax=Vibrio vu... 87 1e-16 UniRef50_A7JY17 Transcriptional antiterminator n=8 Tax=Vibrio Re... 86 4e-16 UniRef50_Q1N2D2 Putative uncharacterized protein n=1 Tax=Bermane... 85 6e-16 UniRef50_C3NZ10 Transcriptional antiterminator n=31 Tax=Vibrio R... 84 1e-15 UniRef50_Q15V95 Transcriptional antiterminator, Rof n=1 Tax=Pseu... 84 2e-15 UniRef50_A3Y5G8 Putative uncharacterized protein n=1 Tax=Marinom... 83 3e-15 UniRef50_B3PH51 Modulator of Rho-dependent transcription termina... 82 5e-15 UniRef50_A0Y0U5 Putative uncharacterized protein n=1 Tax=Alterom... 82 5e-15 UniRef50_Q2C9D0 Transcriptional antiterminator n=2 Tax=Photobact... 82 6e-15 UniRef50_B5EMC6 Transcriptional antiterminator, Rof n=2 Tax=Acid... 81 8e-15 UniRef50_B1KQ80 Transcriptional antiterminator, Rof n=1 Tax=Shew... 80 2e-14 UniRef50_A3Q9J2 Transcriptional antiterminator, Rof n=7 Tax=Shew... 80 3e-14 UniRef50_C9NTU8 Transcriptional antiterminator n=1 Tax=Vibrio co... 79 4e-14 UniRef50_B9ZK57 Transcriptional antiterminator, Rof n=1 Tax=Thio... 79 5e-14 UniRef50_UPI0001AEC500 hypothetical protein AmacA2_18706 n=1 Tax... 78 1e-13 UniRef50_Q0AJD0 Transcriptional antiterminator, Rof n=2 Tax=Nitr... 78 1e-13 UniRef50_C6MBY6 Transcriptional antiterminator, Rof n=1 Tax=Nitr... 75 7e-13 UniRef50_C9PFC4 Transcriptional antiterminator n=1 Tax=Vibrio fu... 75 9e-13 UniRef50_A4BCS7 Putative uncharacterized protein n=1 Tax=Reineke... 74 1e-12 UniRef50_B0TMP4 Transcriptional antiterminator, Rof n=9 Tax=Gamm... 72 4e-12 UniRef50_Q0A5U7 Transcriptional antiterminator, Rof n=1 Tax=Alka... 71 8e-12 UniRef50_A4CFB2 Putative uncharacterized protein n=1 Tax=Pseudoa... 71 8e-12 UniRef50_B8GPB7 Transcriptional antiterminator, Rof n=1 Tax=Thio... 71 9e-12 UniRef50_Q47UI2 Putative uncharacterized protein n=1 Tax=Colwell... 71 1e-11 UniRef50_Q2BPA6 Putative uncharacterized protein n=1 Tax=Neptuni... 71 2e-11 UniRef50_A4STJ9 Modulator of Rho-dependent transcription termina... 70 2e-11 UniRef50_Q3SIL6 Transcriptional antiterminator, Rof n=1 Tax=Thio... 69 5e-11 Sequences not found previously or not previously below threshold: UniRef50_A8H694 Transcriptional antiterminator, Rof n=1 Tax=Shew... 68 9e-11 UniRef50_B8K818 Putative uncharacterized protein n=1 Tax=Vibrio ... 56 3e-07 UniRef50_Q081B6 Transcriptional antiterminator, Rof n=1 Tax=Shew... 53 3e-06 UniRef50_C6NSC5 Transcriptional antiterminator, Rof n=1 Tax=Acid... 51 8e-06 UniRef50_A1ZYH1 Putative uncharacterized protein n=1 Tax=Microsc... 50 2e-05 UniRef50_D1KE28 Putative uncharacterized protein n=1 Tax=uncultu... 49 3e-05 UniRef50_A6F9S9 Putative uncharacterized protein n=1 Tax=Moritel... 48 1e-04 UniRef50_Q12MD8 Transcriptional antiterminator, Rof n=1 Tax=Shew... 45 6e-04 UniRef50_B9TIC6 Putative uncharacterized protein n=1 Tax=Ricinus... 44 0.001 UniRef50_Q0KB30 Putative uncharacterized protein h16_A1662 n=1 T... 44 0.002 UniRef50_C7PBT9 Putative uncharacterized protein n=1 Tax=Chitino... 42 0.005 UniRef50_Q3JEK1 Putative uncharacterized protein n=2 Tax=Nitroso... 41 0.013 >UniRef50_P0AFW8 Protein rof n=144 Tax=Enterobacteriaceae RepID=ROF_ECOLI Length = 84 Score = 112 bits (280), Expect = 5e-24, Method: Composition-based stats. Identities = 84/84 (100%), Positives = 84/84 (100%) Query: 1 MNDTYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVEYLVVEAAGET 60 MNDTYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVEYLVVEAAGET Sbjct: 1 MNDTYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVEYLVVEAAGET 60 Query: 61 RELRLDKITSFSHPEIGTVVVSES 84 RELRLDKITSFSHPEIGTVVVSES Sbjct: 61 RELRLDKITSFSHPEIGTVVVSES 84 >UniRef50_D0KJR0 Transcriptional antiterminator, Rof n=14 Tax=Enterobacteriaceae RepID=D0KJR0_PECWW Length = 86 Score = 106 bits (266), Expect = 2e-22, Method: Composition-based stats. Identities = 58/84 (69%), Positives = 70/84 (83%) Query: 1 MNDTYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVEYLVVEAAGET 60 M++ YQPINCDDYD+LE CQ L LTLEL++GE + KASD++SRK +EYLV+EA+G T Sbjct: 3 MSNEYQPINCDDYDSLEATCQQSLTLTLELRNGEVVTGKASDMISRKQIEYLVIEASGAT 62 Query: 61 RELRLDKITSFSHPEIGTVVVSES 84 RELRLD I SFSHPEIG +VVSES Sbjct: 63 RELRLDHIVSFSHPEIGKIVVSES 86 >UniRef50_D0FPX3 Rho-binding antiterminator protein n=2 Tax=Erwinia pyrifoliae RepID=D0FPX3_ERWPY Length = 87 Score = 99 bits (248), Expect = 2e-20, Method: Composition-based stats. Identities = 54/82 (65%), Positives = 69/82 (84%) Query: 2 NDTYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVEYLVVEAAGETR 61 N+ Y+PINCDDYDNLELACQ+ +LTL LK+ E+L+A+A ++SRKNVEYL ++ AG R Sbjct: 4 NEVYKPINCDDYDNLELACQNKWLLTLVLKNSEQLEARAEGILSRKNVEYLSIQVAGACR 63 Query: 62 ELRLDKITSFSHPEIGTVVVSE 83 +LRLD I SFSHP++GTVVVSE Sbjct: 64 DLRLDHILSFSHPQLGTVVVSE 85 >UniRef50_A9L641 Transcriptional antiterminator, Rof n=8 Tax=Gammaproteobacteria RepID=A9L641_SHEB9 Length = 90 Score = 94.2 bits (233), Expect = 1e-18, Method: Composition-based stats. Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 5/85 (5%) Query: 3 DTYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSR-KNVEYLVVEAAGETR 61 Y+ I C+ YD LELAC L +EL DG + Q +A +R E+LV++ + Sbjct: 2 SDYKMIPCEHYDYLELACLRGYQLKIELIDGTQCQGQAITTQTRADKTEWLVIQQQQNKQ 61 Query: 62 ELRLDKITSFS----HPEIGTVVVS 82 LRLD I + + H E G + ++ Sbjct: 62 SLRLDHIVAITPVDVHAEFGRMQIA 86 >UniRef50_C1M505 Transcriptional antiterminator n=1 Tax=Citrobacter sp. 30_2 RepID=C1M505_9ENTR Length = 95 Score = 91.5 bits (226), Expect = 8e-18, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 1/73 (1%) Query: 2 NDTYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDL-VSRKNVEYLVVEAAGET 60 + Y PI+CD +D LE+AC +H L +EL DG AKA + + E+LVV + Sbjct: 5 TEEYHPIDCDLHDYLEIACMYHYWLRIELTDGTCFDAKALTTCTTVEKEEFLVVGQSENQ 64 Query: 61 RELRLDKITSFSH 73 +++RLD +++ + Sbjct: 65 QKIRLDYLSAITA 77 >UniRef50_Q3KB29 Modulator of Rho-dependent transcription termination n=8 Tax=Gammaproteobacteria RepID=Q3KB29_PSEPF Length = 92 Score = 89.6 bits (221), Expect = 3e-17, Method: Composition-based stats. Identities = 33/85 (38%), Positives = 51/85 (60%), Gaps = 5/85 (5%) Query: 5 YQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVS-RKNVEYLVVEAAGETREL 63 YQP+NCD YD LE+AC L +EL DG++L AKA + E+LV+E +E+ Sbjct: 4 YQPLNCDLYDYLEIACLRGYQLDIELIDGQRLMAKAVTTRTSSDKEEFLVIEQQAAQQEI 63 Query: 64 RLDKITSF----SHPEIGTVVVSES 84 RLD++ + ++ E G V+++E Sbjct: 64 RLDQLLAITPQETNAEFGRVILAEG 88 >UniRef50_Q8D5E4 Transcriptional antiterminator n=2 Tax=Vibrio vulnificus RepID=Q8D5E4_VIBVU Length = 82 Score = 87.2 bits (215), Expect = 1e-16, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 5/82 (6%) Query: 7 PINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRK-NVEYLVVEAAGETRELRL 65 I+C+ YD LE+AC + + + L LKDG ++ + + E L VE G+ + Sbjct: 1 MISCNQYDYLEIACLYRIGVCLTLKDGSEISGVPVNTGFNEHKQECLEVETGGDALWVPT 60 Query: 66 DKITSFSH----PEIGTVVVSE 83 D I + P + + Sbjct: 61 DMILTMQALTENPHFTKIEFEQ 82 >UniRef50_A7JY17 Transcriptional antiterminator n=8 Tax=Vibrio RepID=A7JY17_VIBSE Length = 81 Score = 85.7 bits (211), Expect = 4e-16, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 5/80 (6%) Query: 7 PINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDL-VSRKNVEYLVVEAAGETRELRL 65 + C YD +E+AC L + + LK+GE Q A D + E L ++ GE Sbjct: 1 MVTCSQYDFIEIACMFKLPIEITLKNGETHQGNAFDTGYDMQRQECLFLDMDGEHTAFPT 60 Query: 66 DKITSFSH----PEIGTVVV 81 +++ + P V Sbjct: 61 EQLVAMRALKANPHFDEVTF 80 >UniRef50_Q1N2D2 Putative uncharacterized protein n=1 Tax=Bermanella marisrubri RepID=Q1N2D2_9GAMM Length = 81 Score = 85.3 bits (210), Expect = 6e-16, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 36/80 (45%), Gaps = 5/80 (6%) Query: 7 PINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDL-VSRKNVEYLVVEAAGETRELRL 65 + C +D +E+AC + + + LEL+ GE ++ A D ++ +++ + + + Sbjct: 1 MVTCAQHDYIEIACLYQISVCLELEHGEFVKGIALDTAYDQQKRHCILINTDEGDQWIPI 60 Query: 66 DKITSF----SHPEIGTVVV 81 D + + +P + Sbjct: 61 DSLCAMHAMSKNPHFSEIYF 80 >UniRef50_C3NZ10 Transcriptional antiterminator n=31 Tax=Vibrio RepID=C3NZ10_VIBCJ Length = 81 Score = 84.2 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 5/80 (6%) Query: 7 PINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDL-VSRKNVEYLVVEAAGETRELRL 65 ++C YD +ELAC HL + L +K GE A+D + + E + + ET L Sbjct: 1 MVSCSQYDYIELACLFHLPVKLTMKSGEVYYGVAADTQRNSQKQECIALRGEEETWLLET 60 Query: 66 DKITSFSH----PEIGTVVV 81 D+++S P + Sbjct: 61 DQLSSMEALSEQPHFSVIHF 80 >UniRef50_Q15V95 Transcriptional antiterminator, Rof n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15V95_PSEA6 Length = 90 Score = 83.8 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 5/82 (6%) Query: 8 INCDDYDNLELACQHHLMLTLELKDGEKLQAKASDL-VSRKNVEYLVVEAAGETRELRLD 66 + C + D +ELAC ++ + L L+DG +++ A D +++ E +V+ +A + L+ Sbjct: 1 MKCAEQDYIELACLFNMPILLRLRDGSEIKGTAKDTSYNKQKQECIVLHSAEGECSIALN 60 Query: 67 KITSFSH----PEIGTVVVSES 84 I P + S+S Sbjct: 61 LIALMQAQHANPHFSEIRFSKS 82 >UniRef50_A3Y5G8 Putative uncharacterized protein n=1 Tax=Marinomonas sp. MED121 RepID=A3Y5G8_9GAMM Length = 83 Score = 83.0 bits (204), Expect = 3e-15, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 38/70 (54%), Gaps = 1/70 (1%) Query: 7 PINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVE-YLVVEAAGETRELRL 65 + C+ +D +ELAC + + L L++G++++ +A D + + E L ++ E + + L Sbjct: 3 MMTCEQHDYIELACVYLYEINLTLRNGDQVKGQALDTLYNDDKEACLCIKQGEEVKLVVL 62 Query: 66 DKITSFSHPE 75 D+I + Sbjct: 63 DQIVGMRACQ 72 >UniRef50_B3PH51 Modulator of Rho-dependent transcription termination (ROF) superfamily n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PH51_CELJU Length = 81 Score = 82.2 bits (202), Expect = 5e-15, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 35/80 (43%), Gaps = 5/80 (6%) Query: 7 PINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDL-VSRKNVEYLVVEAAGETRELRL 65 I+CD +D +E+ C +H + L L G ++ A D + + E + + + + L Sbjct: 1 MIHCDQHDYIEIVCLYHYPIRLTLTSGATIEGIAQDTQHNDQREECIKLSTDTGEQLVVL 60 Query: 66 DKITSF----SHPEIGTVVV 81 ++ +P + VV Sbjct: 61 SELKQLDVLVENPHVERVVF 80 >UniRef50_A0Y0U5 Putative uncharacterized protein n=1 Tax=Alteromonadales bacterium TW-7 RepID=A0Y0U5_9GAMM Length = 83 Score = 82.2 bits (202), Expect = 5e-15, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 1/70 (1%) Query: 7 PINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDL-VSRKNVEYLVVEAAGETRELRL 65 I+C+ YD +E+AC HHL + L LK+G+ + A+D+ + E + + +GE + + L Sbjct: 1 MISCNHYDYIEIACMHHLSIELILKNGDVVCGVAADIKRNALKQECIAINVSGELKLIVL 60 Query: 66 DKITSFSHPE 75 + I+ E Sbjct: 61 NTISVLKARE 70 >UniRef50_Q2C9D0 Transcriptional antiterminator n=2 Tax=Photobacterium RepID=Q2C9D0_9GAMM Length = 80 Score = 81.9 bits (201), Expect = 6e-15, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 5/80 (6%) Query: 7 PINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDL-VSRKNVEYLVVEAAGETRELRL 65 I+C +D +E+AC HL ++L ++GE++ A D + E + ++ + L Sbjct: 1 MISCHQHDYIEIACMLHLDVSLTYRNGERISGIAQDTCYNAHREECIELKINNTVSRIVL 60 Query: 66 DKITSFSH----PEIGTVVV 81 D + S P TV Sbjct: 61 DHLASMQALTANPHFETVNF 80 >UniRef50_B5EMC6 Transcriptional antiterminator, Rof n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5EMC6_ACIF5 Length = 77 Score = 81.5 bits (200), Expect = 8e-15, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 30/72 (41%) Query: 1 MNDTYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVEYLVVEAAGET 60 M+ Y+PI+C+ + LELA L + DG D+ + + E+L + Sbjct: 1 MHSAYKPISCELHSALELAAMRRRPARLHMTDGSWQDGIILDVWTEQGREWLCLRRLDGD 60 Query: 61 RELRLDKITSFS 72 E+ L I Sbjct: 61 VEIDLTHIQQVQ 72 >UniRef50_B1KQ80 Transcriptional antiterminator, Rof n=1 Tax=Shewanella woodyi ATCC 51908 RepID=B1KQ80_SHEWM Length = 81 Score = 79.9 bits (196), Expect = 2e-14, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 5/78 (6%) Query: 7 PINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLV-SRKNVEYLVVEAAGETRELRL 65 I CD YD +E+AC + + + L L GE+++ A + E+LV++ ET + L Sbjct: 1 MIKCDIYDYIEVACLYKIEVLLTLHSGEEVKGVADTTSINGDKQEFLVIKQGTETLNIEL 60 Query: 66 DKITSFSH----PEIGTV 79 I + P ++ Sbjct: 61 VSIKNMKALTPNPHFSSL 78 >UniRef50_A3Q9J2 Transcriptional antiterminator, Rof n=7 Tax=Shewanella RepID=A3Q9J2_SHELP Length = 93 Score = 79.5 bits (195), Expect = 3e-14, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 4/84 (4%) Query: 3 DTYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVEYLVVEAAGETRE 62 Y+ I+C +D+LELAC L +E GE + EYL V + Sbjct: 2 QPYRIIDCHVHDHLELACIRGYQLLIETSTGEMRATAITLTTQADKSEYLTVRNEAGEQA 61 Query: 63 LRLDKITSFS----HPEIGTVVVS 82 +RLD I + + VV++ Sbjct: 62 IRLDHIQAITPLTQGAAFDRVVIA 85 >UniRef50_C9NTU8 Transcriptional antiterminator n=1 Tax=Vibrio coralliilyticus ATCC BAA-450 RepID=C9NTU8_9VIBR Length = 84 Score = 79.2 bits (194), Expect = 4e-14, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 38/82 (46%), Gaps = 5/82 (6%) Query: 7 PINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDL-VSRKNVEYLVVEAAGETRELRL 65 I+C+ YD +E+AC +H+ + L + G+ ++ KA E +V+ A +L Sbjct: 1 MISCNQYDYIEIACLYHIPVRLVTESGQIVEGKAMTTSYDSHRRESIVIATATGETQLPT 60 Query: 66 DKITSFSH----PEIGTVVVSE 83 + + S + P + ++ Sbjct: 61 EALVSMTALIENPHFKDIKFTQ 82 >UniRef50_B9ZK57 Transcriptional antiterminator, Rof n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZK57_9GAMM Length = 82 Score = 78.8 bits (193), Expect = 5e-14, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 4/72 (5%) Query: 5 YQPINCDDYDNLELACQHHLMLTLELKDGEKLQ---AKASDLVSRKNVEYLVVE-AAGET 60 Y PI C+ Y LELA L + GE + + DL +R+ EYL++ A G Sbjct: 7 YTPIACERYSELELAILRGQHLRTHWRRGEMDRIAVVRPLDLRTRRGAEYLILRDAEGRR 66 Query: 61 RELRLDKITSFS 72 + RLD++ SF Sbjct: 67 QWWRLDRLVSFE 78 >UniRef50_UPI0001AEC500 hypothetical protein AmacA2_18706 n=1 Tax=Alteromonas macleodii ATCC 27126 RepID=UPI0001AEC500 Length = 84 Score = 78.0 bits (191), Expect = 1e-13, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 8/82 (9%) Query: 8 INCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKN----VEYLVVEAAGETREL 63 I C YD +E+AC + L +++ LKDG ++ A V K E + + T+ + Sbjct: 3 IACQLYDYIEIACMYGLEVSVVLKDGNTVKGTALTTVIDKRNDVATECIQMSIDKTTQNI 62 Query: 64 RLDKITSFSH----PEIGTVVV 81 L++I P +V Sbjct: 63 ALNEIAQLDAITDNPHFSSVSF 84 >UniRef50_Q0AJD0 Transcriptional antiterminator, Rof n=2 Tax=Nitrosomonas RepID=Q0AJD0_NITEC Length = 89 Score = 77.6 bits (190), Expect = 1e-13, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 5/84 (5%) Query: 6 QPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVS-RKNVEYLVVEAA---GETR 61 Q I+CD +D +E+AC + + L LKD + KA D+++ + E+L++E + Sbjct: 3 QHISCDLHDYIEVACMYGYQVRLILKDQSTAEGKAKDILTDTETREFLLLETEIGSQQVE 62 Query: 62 ELRLDKITSFS-HPEIGTVVVSES 84 + LDK+ + VV S S Sbjct: 63 LIFLDKLQVLTPDARFTEVVFSGS 86 >UniRef50_C6MBY6 Transcriptional antiterminator, Rof n=1 Tax=Nitrosomonas sp. AL212 RepID=C6MBY6_9PROT Length = 84 Score = 74.9 bits (183), Expect = 7e-13, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 40/79 (50%), Gaps = 6/79 (7%) Query: 8 INCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSR-KNVEYLVVEAAGETRELRLD 66 I+C+ +D +E+AC + L L LK+ ++ A D+V+ + E LV++ + + L Sbjct: 6 ISCEQHDFVEVACMYRYRLRLVLKNRLIIEGIAIDIVNSPEKQECLVIDNDSRVQ-IELT 64 Query: 67 KITSFS----HPEIGTVVV 81 ++ S + + V+ Sbjct: 65 QLVSMEVLTPNAKFREVIF 83 >UniRef50_C9PFC4 Transcriptional antiterminator n=1 Tax=Vibrio furnissii CIP 102972 RepID=C9PFC4_VIBFU Length = 83 Score = 74.5 bits (182), Expect = 9e-13, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 36/82 (43%), Gaps = 5/82 (6%) Query: 7 PINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDL-VSRKNVEYLVVEAAGETRELRL 65 I+C YD +ELAC + + + L +G+ +Q A + + E LV++ A R + Sbjct: 1 MISCSQYDAIELACVYQFPVAVTLLNGDVVQGIAKGTGYNAERQECLVLQQAECERWVET 60 Query: 66 DKI----TSFSHPEIGTVVVSE 83 + +P + + + Sbjct: 61 ATLRRMQVLIENPHLSDIHFQQ 82 >UniRef50_A4BCS7 Putative uncharacterized protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BCS7_9GAMM Length = 93 Score = 74.2 bits (181), Expect = 1e-12, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 35/73 (47%) Query: 8 INCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVEYLVVEAAGETRELRLDK 67 + CD D+ E C L + + L +G +L A L + +E L +++ + L++ Sbjct: 6 LRCDLQDHFEHVCVLQLPVRVRLTNGTRLAGTADTLRVVQGLESLQLQSQRGIELVPLNE 65 Query: 68 ITSFSHPEIGTVV 80 I + S+P+ G Sbjct: 66 IATLSYPQAGQTR 78 >UniRef50_B0TMP4 Transcriptional antiterminator, Rof n=9 Tax=Gammaproteobacteria RepID=B0TMP4_SHEHH Length = 100 Score = 72.2 bits (176), Expect = 4e-12, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 36/99 (36%), Gaps = 24/99 (24%) Query: 7 PINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDL-VSRKNVEYLVV----------- 54 I+C+ YD +E+ C + + L+LK GE + A D K E + + Sbjct: 1 MISCNQYDYIEIVCLYRYPIALKLKSGETISGIALDTARDSKKRECIKLTYQDSPNTDAD 60 Query: 55 --------EAAGETRELRLDKITS----FSHPEIGTVVV 81 T+ + LD I S +P +V Sbjct: 61 DSEDDGVNNDLAVTQLIILDDIASIHVCIDNPHFQSVEF 99 >UniRef50_Q0A5U7 Transcriptional antiterminator, Rof n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0A5U7_ALHEH Length = 83 Score = 71.5 bits (174), Expect = 8e-12, Method: Composition-based stats. Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 4/75 (5%) Query: 2 NDTYQPINCDDYDNLELACQHHLMLTLELKD---GEKLQAKASDLVSRKNVEYLVVEA-A 57 ND Y+PI+C+ Y LEL H L + + DL +R EYLV Sbjct: 7 NDDYRPISCERYAELELHIMHARRLRVAWRTPQGQHIDTLIPEDLHTRDGAEYLVARNRL 66 Query: 58 GETRELRLDKITSFS 72 GE +RLD++ F Sbjct: 67 GEAFIIRLDQLQRFR 81 >UniRef50_A4CFB2 Putative uncharacterized protein n=1 Tax=Pseudoalteromonas tunicata D2 RepID=A4CFB2_9GAMM Length = 82 Score = 71.5 bits (174), Expect = 8e-12, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 4/70 (5%) Query: 8 INCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRK----NVEYLVVEAAGETREL 63 ++C D+D +E+AC + L + L + ++ + A R+ E L+++ + E+ Sbjct: 1 MDCADHDFIEVACLYQYRLKISLCNNQQKEGIALTTQVRQQGVLKAELLIIQTSAGNEEI 60 Query: 64 RLDKITSFSH 73 LD+I Sbjct: 61 VLDEIKQIEA 70 >UniRef50_B8GPB7 Transcriptional antiterminator, Rof n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GPB7_THISH Length = 82 Score = 71.5 bits (174), Expect = 9e-12, Method: Composition-based stats. Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 5/74 (6%) Query: 1 MNDTYQPINCDDYDNLELACQHHLMLTLELKD----GEKLQAKASDLVSRKNVEYLVVEA 56 M Y PI+C+ Y ELA L + KD + +DL +R++ E+++ Sbjct: 1 MTSDYTPISCELYSEYELAIMRGRTLKVRWKDRYGMDRVETLRPTDLRTRRHAEFMIARN 60 Query: 57 A-GETRELRLDKIT 69 G+ R LRLD+I Sbjct: 61 QLGQRRVLRLDRIV 74 >UniRef50_Q47UI2 Putative uncharacterized protein n=1 Tax=Colwellia psychrerythraea 34H RepID=Q47UI2_COLP3 Length = 84 Score = 70.7 bits (172), Expect = 1e-11, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 32/66 (48%) Query: 8 INCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVEYLVVEAAGETRELRLDK 67 I+CD +D E+ C ++ + KD + A+D+ + EYL + +T +L L + Sbjct: 5 ISCDAHDYFEIVCMRRSLIKVTSKDNKIYHGIATDIKLVEKQEYLQISDDIKTEQLLLSE 64 Query: 68 ITSFSH 73 + + Sbjct: 65 VKTLEA 70 >UniRef50_Q2BPA6 Putative uncharacterized protein n=1 Tax=Neptuniibacter caesariensis RepID=Q2BPA6_9GAMM Length = 80 Score = 70.7 bits (172), Expect = 2e-11, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 4/72 (5%) Query: 3 DTYQPINCDDYDNLELACQHHLMLTLELKDG---EKLQAKASDLVSRKNVEYLVVEAAG- 58 Y PINC+ +D ELAC + +E D + + DL K E+L+ E Sbjct: 5 QQYTPINCEIHDGYELACMRKAIHNVEWIDQGKTHSEKLRFLDLEYSKKGEFLIAENEQK 64 Query: 59 ETRELRLDKITS 70 E R++RLD I S Sbjct: 65 EPRKIRLDSIFS 76 >UniRef50_A4STJ9 Modulator of Rho-dependent transcription termination n=1 Tax=Aeromonas salmonicida subsp. salmonicida A449 RepID=A4STJ9_AERS4 Length = 84 Score = 70.3 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 32/56 (57%) Query: 4 TYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVEYLVVEAAGE 59 YQPI+CD YD LE+A L +TL +DG + K + + + VEYL++ + Sbjct: 3 DYQPISCDLYDWLEIAASWQLPVTLASRDGHQWDDKIRTIEASEGVEYLLLHSGER 58 >UniRef50_Q3SIL6 Transcriptional antiterminator, Rof n=1 Tax=Thiobacillus denitrificans ATCC 25259 RepID=Q3SIL6_THIDA Length = 75 Score = 68.8 bits (167), Expect = 5e-11, Method: Composition-based stats. Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 3/76 (3%) Query: 1 MNDT-YQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVEYLVVEAAGE 59 M++T Y PI C ++ LE A L ++ DG+K + + D+ +R+ E+L E G Sbjct: 1 MSETPYAPIPCAQHERLEFAALTGQWLEVK-IDGQKQRLRPLDVYTREGAEWLRAETDGG 59 Query: 60 T-RELRLDKITSFSHP 74 LRLD++ Sbjct: 60 EALTLRLDRLVLAEDA 75 >UniRef50_A8H694 Transcriptional antiterminator, Rof n=1 Tax=Shewanella pealeana ATCC 700345 RepID=A8H694_SHEPA Length = 102 Score = 68.0 bits (165), Expect = 9e-11, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 36/99 (36%), Gaps = 26/99 (26%) Query: 7 PINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDL-VSRKNVEYL------------- 52 ++C +D +EL C + + L +K+G+ + KA D + + + Sbjct: 1 MLSCSQHDYIELVCIFNYPIKLTMKNGDSISGKALDTCRNTQKQHCIKLVCKQQNCIKGS 60 Query: 53 --------VVEAAGETRELRLDKITSFS----HPEIGTV 79 + E R + LD I S +P + + Sbjct: 61 HSQSSPETQLSDEAEHRLIVLDDIASMQVCVDNPHLDRI 99 >UniRef50_B8K818 Putative uncharacterized protein n=1 Tax=Vibrio parahaemolyticus 16 RepID=B8K818_VIBPA Length = 74 Score = 56.0 bits (134), Expect = 3e-07, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 5/66 (7%) Query: 21 QHHLMLTLELKDGEKLQAKASDLVSRK-NVEYLVVEAAGETRELRLDKITSFS----HPE 75 + L LK G+K+Q A D V E +++E + LD I +P Sbjct: 1 MFRYPVVLTLKSGDKVQGTAIDTVRNDNKEECVLLETLNGASYVLLDSIVQLEVSVDNPH 60 Query: 76 IGTVVV 81 V Sbjct: 61 FKKKVF 66 >UniRef50_Q081B6 Transcriptional antiterminator, Rof n=1 Tax=Shewanella frigidimarina NCIMB 400 RepID=Q081B6_SHEFN Length = 88 Score = 53.4 bits (127), Expect = 3e-06, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 37/86 (43%), Gaps = 9/86 (10%) Query: 7 PINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDL----VSRKNVEYLV-VEAAGETR 61 PI C+ YD +E+ C + + L L DG +Q + + +++ E + + + Sbjct: 3 PIKCEIYDYIEIICLYRYRVKLTLTDGTHIQGQFDRILYVNRNQQKHEAIAGINQQQQAI 62 Query: 62 ELRLDKITSF----SHPEIGTVVVSE 83 E+ L ITS + + + E Sbjct: 63 EVILTYITSIDVLSQNASFSHISLIE 88 >UniRef50_C6NSC5 Transcriptional antiterminator, Rof n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NSC5_9GAMM Length = 75 Score = 51.4 bits (122), Expect = 8e-06, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 31/60 (51%) Query: 5 YQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVEYLVVEAAGETRELR 64 Y PI C + LELA + L+L+DG +L+ +D+ + K EYL + + ++ Sbjct: 7 YIPIGCALHSELELAAIQRRRVRLQLRDGRELRGIIADVWTEKGREYLRLRSEDGKEQVV 66 >UniRef50_A1ZYH1 Putative uncharacterized protein n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZYH1_9SPHI Length = 84 Score = 50.3 bits (119), Expect = 2e-05, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 7/76 (9%) Query: 5 YQPINCDDYDNLELACQHHLMLTLELKDGEKLQA----KASDLVSRKNVEYLVVEAAGET 60 Y PINC YD LE + D + +A DL + VEY+ Sbjct: 7 YNPINCSLYDYLEAWAVTQTPCKVTYLDAQNKEAYFTKTIVDLYIKDKVEYVKWNDGS-- 64 Query: 61 RELRLDKITSFSHPEI 76 LRLD++ + Sbjct: 65 -SLRLDQLIEINGVRF 79 >UniRef50_D1KE28 Putative uncharacterized protein n=1 Tax=uncultured SUP05 cluster bacterium RepID=D1KE28_9GAMM Length = 71 Score = 49.5 bits (117), Expect = 3e-05, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 2/67 (2%) Query: 3 DTYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVEYLV-VEAAGETR 61 YQ I+C+ + ELA + + + +G+ + D+VS+ E+L+ ++ + Sbjct: 2 SDYQRISCEAHSVYELAIMRNQSIEVT-INGKPQTIQPQDIVSKSGEEFLIFLDKEDTRK 60 Query: 62 ELRLDKI 68 ELR D+I Sbjct: 61 ELRADQI 67 >UniRef50_A6F9S9 Putative uncharacterized protein n=1 Tax=Moritella sp. PE36 RepID=A6F9S9_9GAMM Length = 67 Score = 47.6 bits (112), Expect = 1e-04, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 5/66 (7%) Query: 21 QHHLMLTLELKDGEKLQAKASDLVSRKNV-EYLVVEAAGETRELRLDKITSFS----HPE 75 H + L LK G ++ K D N E + + G T + LD I + +P Sbjct: 1 MHQYPIKLMLKSGVEIVGKGLDTKRNDNRDECIQMMVDGVTSLVVLDTILTLEVTVDNPH 60 Query: 76 IGTVVV 81 V Sbjct: 61 FKLVTF 66 >UniRef50_Q12MD8 Transcriptional antiterminator, Rof n=1 Tax=Shewanella denitrificans OS217 RepID=Q12MD8_SHEDO Length = 106 Score = 45.3 bits (106), Expect = 6e-04, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 33/85 (38%), Gaps = 9/85 (10%) Query: 6 QPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRK----NVEYLV-VEAAGET 60 + I C DYD +E+ C H +T+ +KD + + + + E +V + Sbjct: 21 RHIRCADYDYIEIMCLHRYRVTVMMKDLTQYEGQFHTTSIIEFEGIKREAIVGFDINQAP 80 Query: 61 RELRLDKITSFS----HPEIGTVVV 81 +L + I S S + + Sbjct: 81 IQLMFEDILSISVHDDKAQFSRLQF 105 >UniRef50_B9TIC6 Putative uncharacterized protein n=1 Tax=Ricinus communis RepID=B9TIC6_RICCO Length = 78 Score = 44.5 bits (104), Expect = 0.001, Method: Composition-based stats. Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 7/80 (8%) Query: 1 MNDTYQPINCDDYDN-LELACQHH-LMLTLELKDGEK--LQAKASDLVSRKNVEYLVVEA 56 M+ Y PI+C+ +D L LA LT+ DG L D+ + VEYL + Sbjct: 1 MDQPYIPIDCERHDELLALATLRRPCTLTVARPDGTLDNLAGVIEDVYADTGVEYLRLRG 60 Query: 57 AGETRELRLDKITSFSHPEI 76 +RLD I + + Sbjct: 61 GP---TVRLDWIRALNGRPF 77 >UniRef50_Q0KB30 Putative uncharacterized protein h16_A1662 n=1 Tax=Ralstonia eutropha H16 RepID=Q0KB30_RALEH Length = 83 Score = 43.7 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 7/74 (9%) Query: 4 TYQPINCDDYDNLELACQHHLMLTLELKDG----EKLQAKASDLVSRKNVEYLVVEAAGE 59 Y PI+C+ +D LE + +D ++ +D+ S EYL ++ Sbjct: 7 QYSPISCEFHDRLEDLATVRRPTQIHYRDADGLLQQRTETITDVYSLGGAEYLTLKTGE- 65 Query: 60 TRELRLDKITSFSH 73 LRLD++ Sbjct: 66 --TLRLDQLLEVDG 77 >UniRef50_C7PBT9 Putative uncharacterized protein n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PBT9_CHIPD Length = 84 Score = 42.2 bits (98), Expect = 0.005, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 7/76 (9%) Query: 2 NDTYQPINCDDYDNLELACQHHLMLTLELKDGE----KLQAKASDLVSRKNVEYLVVEAA 57 N+ YQPI+C+ YD LE + + +D E + A+ D+ + VEY+ ++ Sbjct: 5 NNPYQPIDCNYYDRLEAWATMRTICQIIFRDEEGKEQDVTARIEDVYALNKVEYMRMDNG 64 Query: 58 GETRELRLDKITSFSH 73 +RLD + S ++ Sbjct: 65 ---LVIRLDSLLSVNN 77 >UniRef50_Q3JEK1 Putative uncharacterized protein n=2 Tax=Nitrosococcus oceani RepID=Q3JEK1_NITOC Length = 85 Score = 41.0 bits (95), Expect = 0.013, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 7/84 (8%) Query: 4 TYQPINCDDYDNLE-LACQHHL-MLTLELKDGEKLQA--KASDLVSRKNVEYLVVEAAGE 59 Y PINC+ +D LE LA + + DG+ ++ +D+ ++ E+ V+ + Sbjct: 3 DYIPINCNFHDQLEALATLRKQCHIFYQTMDGKIIETLDTITDIYTKNQEEFTVLGSGE- 61 Query: 60 TRELRLDKITSFSHPEIGTVVVSE 83 +RLD++ + S Sbjct: 62 --IIRLDRLLEVDGQSYLEMKTSG 83 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.312 0.152 0.419 Lambda K H 0.267 0.0462 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 436,185,472 Number of Sequences: 3077464 Number of extensions: 12025732 Number of successful extensions: 22984 Number of sequences better than 1.0e-01: 45 Number of HSP's better than 0.1 without gapping: 76 Number of HSP's successfully gapped in prelim test: 25 Number of HSP's that attempted gapping in prelim test: 22865 Number of HSP's gapped (non-prelim): 101 length of query: 84 length of database: 1,040,396,356 effective HSP length: 54 effective length of query: 30 effective length of database: 874,213,300 effective search space: 26226399000 effective search space used: 26226399000 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.6 bits) S2: 87 (37.9 bits)