>ss_pred
CCCCCEEECHHHHCHHHHHHHCCCEEEEEEECCCEEEEEEEEEEECCCEEEEEEECCCCEEEEEEEEEEEEECCEEEEEEEECC
>ss_conf
977630136878367889997698099999539989989936893198289999838955898701358850850116998319
>batch____
MNDTYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVEYLVVEAAGETRELRLDKITSFSHPEIGTVVVSES
>UniRef50_A9L641(1-86:90) Transcriptional antiterminator, Rof n=8 Tax=Gammaproteobacteria RepID=A9L641_SHEB9  E=1e-05 s/c=0.60 id=38% cov=98%
MSD-YKMIPCEHYDYLELACLRGYQLKIELIDGTQCQGQAITTQTRADkTEWLVIQQQQNKQSLRLDHIVAITpvdvHAEFGRMQIA--
>UniRef50_Q3KB29(4-87:92) Modulator of Rho-dependent transcription termination n=8 Tax=Gammaproteobacteria RepID=Q3KB29_PSEPF  E=2e-22 s/c=1.26 id=42% cov=95%
----YQPLNCDLYDYLEIACLRGYQLDIELIDGQRLMAKAvTTRTSSDKEEFLVIEQQAAQQEIRLDQLLAItpqeTNAEFGRVILAE-
>UniRef50_B5EMC6(1-68:77) Transcriptional antiterminator, Rof n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5EMC6_ACIF5  E=0.0008 s/c=0.66 id=26% cov=82%
MHSAYKPISCELHSALELAAMRRRPARLHMTDGSWQDGIILDVWTEQGREWLCLRRLDGDVEIDLTHI----------------
>UniRef50_D0KJR0(3-86:86) Transcriptional antiterminator, Rof n=14 Tax=Enterobacteriaceae RepID=D0KJR0_PECWW  E=2e-22 s/c=1.26 id=68% cov=101%
MSNEYQPINCDDYDSLEATCQQSLTLTLELRNGEVVTGKASDMISRKQIEYLVIEASGATRELRLDHIVSFSHPEIGKIVVSES
>UniRef50_A3Y5G8(3-82:83) Putative uncharacterized protein n=1 Tax=Marinomonas sp. MED121 RepID=A3Y5G8_9GAMM  E=2e-13 s/c=0.96 id=27% cov=76%
------MMTCEQHDYIELACVYLYEINLTLRNGDQVKGQALDTLYNDDKEaCLCIKQGEEVKLVVLDQIV---------------
>UniRef50_B3PH51(1-80:81) Modulator of Rho-dependent transcription termination (ROF) superfamily n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PH51_CELJU  E=1e-11 s/c=0.89 id=31% cov=46%
------MIHCDQHDYIEIVCLYHYPIRLTLTSGATIEGIAQDTQ----------------------------------------
>UniRef50_Q3SIL6(1-70:75) Transcriptional antiterminator, Rof n=1 Tax=Thiobacillus denitrificans ATCC 25259 RepID=Q3SIL6_THIDA  E=7e-11 s/c=0.98 id=33% cov=82%
MSETpYAPIPCAQHERLEFAALTGQWLEVK-IDGQKQRLRPLDVYTREGAEWLRAETDGGEALtLRLDRLV---------------
>UniRef50_Q8D5E4(1-82:82) Transcriptional antiterminator n=2 Tax=Vibrio vulnificus RepID=Q8D5E4_VIBVU  E=8e-11 s/c=0.83 id=28% cov=88%
------MISCNQYDYLEIACLYRIGVCLTLKDGSEISGVPVNTgFNEHKQECLEVETGGDALWVPTDMILTMqaltENPHFTKI-----
>UniRef50_A7JY17(1-80:81) Transcriptional antiterminator n=8 Tax=Vibrio RepID=A7JY17_VIBSE   E=3e-10 s/c=0.83 id=27% cov=88%
------MVTCSQYDFIEIACMFKLPIEITLKNGETHQGNAFDTgYDMQRQECLFLDMDGEHTAFPTEQLVAMralkANPHFDEV-----
>UniRef50_C6MBY6(6-83:84) Transcriptional antiterminator, Rof n=1 Tax=Nitrosomonas sp. AL212 RepID=C6MBY6_9PROT  E=2e-09 s/c=0.81 id=26% cov=87%
-------ISCEQHDFVEVACMYRYRLRLVLKNRLIIEGIAIDIVNSpEKQECLVIDNDSRVQ-IELTQLVSMEvltpNAKFREVI----
>UniRef50_Q47UI2(5-68:84) Putative uncharacterized protein n=1 Tax=Colwellia psychrerythraea 34H RepID=Q47UI2_COLP3  E=1e-07 s/c=0.90 id=26% cov=74%
-------ISCDAHDYFEIVCMRRSLIKVTSKDNKIYHGIATDIKLVEKQEYLQISDDIKTEQLLLSEV----------------
>UniRef50_C6NSC5(7-66:75) Transcriptional antiterminator, Rof n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NSC5_9GAMM  E=5e-06 s/c=0.87 id=37% cov=58%
----YIPIGCALHSELELAAIQRRRVRLQLRDGRELRGIIADVWTEKGREYL--------------------------------
>UniRef50_B8K818(1-66:74) Putative uncharacterized protein n=1 Tax=Vibrio parahaemolyticus 16 RepID=B8K818_VIBPA  E=2e-05 s/c=0.76 id=28% cov=73%
--------------------MFRYPVVLTLKSGDKVQGTAIDTVRNDnKEECVLLETLNGASYVLLDSIvqleVSVDNPHFKKKV----
>UniRef50_D1KE28(2-68:71) Putative uncharacterized protein n=1 Tax=uncultured SUP05 cluster bacterium RepID=D1KE28_9GAMM  E=0.0008 s/c=0.67 id=28% cov=77%
----YQRISCEAHSVYELAIMRNQSIEVT-INGKPQTIQPQDIVSKSGEEFLIfLDKEDTRKELRADQII---------------
>UniRef50_D0FPX3(4-85:87) Rho-binding antiterminator protein n=2 Tax=Erwinia pyrifoliae RepID=D0FPX3_ERWPY  E=1e-20 s/c=1.22 id=65% cov=99%
-NEVYKPINCDDYDNLELACQNKWLLTLVLKNSEQLEARAEGILSRKNVEYLSIQVAGACRDLRLDHILSFSHPQLGTVVVSE-
>UniRef50_A3Y5G8(3-82:83) Putative uncharacterized protein n=1 Tax=Marinomonas sp. MED121 RepID=A3Y5G8_9GAMM  E=1e-15 s/c=1.05 id=25% cov=76%
------MMTCEQHDYIELACVYLYEINLTLRNGDQVKGQALDTlYNDDKEACLCIKQGEEVKLVVLDQIV---------------
>UniRef50_A3Q9J2(2-85:93) Transcriptional antiterminator, Rof n=7 Tax=Shewanella RepID=A3Q9J2_SHELP  E=3e-15 s/c=0.99 id=29% cov=94%
----YRIIDCHVHDHLELACIRGYQLLIETSTGEMRATAITLTTQADKSEYLTVRNEAGEQAIRLDHIQAITpltqGAAFDRVVIA--
>UniRef50_Q2C9D0(1-80:80) Transcriptional antiterminator n=2 Tax=Photobacterium RepID=Q2C9D0_9GAMM  E=4e-15 s/c=1.03 id=27% cov=88%
------MISCHQHDYIEIACMLHLDVSLTYRNGERISGIAQDTcYNAHREECIELKINNTVSRIVLDHLASMqaltANPHFETV-----
>UniRef50_Q15V95(1-82:90) Transcriptional antiterminator, Rof n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15V95_PSEA6  E=5e-15 s/c=1.00 id=26% cov=90%
---------CAEQDYIELACLFNMPILLRLRDGSEIKGTAKDTsYNKQKQECIVLHSAEGECSIALNLIALMqaqhANPHFSEIRFSKS
>UniRef50_Q1N2D2(1-80:81) Putative uncharacterized protein n=1 Tax=Bermanella marisrubri RepID=Q1N2D2_9GAMM  E=7e-15 s/c=1.02 id=19% cov=88%
------MVTCAQHDYIEIACLYQISVCLELEHGEFVKGIALDTaYDQQKRHCILINTDEGDQWIPIDSLCAMhamsKNPHFSEI-----
>UniRef50_B9ZK57(6-78:82) Transcriptional antiterminator, Rof n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZK57_9GAMM  E=4e-14 s/c=1.08 id=35% cov=81%
----YTPIACERYSELELAILRGQHLRTHWRRGEMDRiavVRPLDLRTRRGAEYLILRDAEGrRQWWRLDRLVSF-------------
>UniRef50_A0Y0U5(1-80:83) Putative uncharacterized protein n=1 Tax=Alteromonadales bacterium TW-7 RepID=A0Y0U5_9GAMM  E=1e-13 s/c=0.97 id=32% cov=88%
------MISCNHYDYIEIACMHHLSIELILKNGDVVCGVAADIkRNALKQECIAINVSGELKLIVLNTISVLkareSNPYFENV-----
>UniRef50_UPI0001AEC500(3-84:84) hypothetical protein AmacA2_18706 n=1 Tax=Alteromonas macleodii ATCC 27126 RepID=UPI0001AEC500  E=2e-13 s/c=0.94 id=29% cov=87%
-------IACQLYDYIEIACMYGLEVSVVLKDGNTVKGTALTTVIDKRndvaTECIQMSIDKTTQNIALNEIAQLdaitDNPHFSSV-----
>UniRef50_B8GPB7(1-74:82) Transcriptional antiterminator, Rof n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GPB7_THISH  E=9e-12 s/c=0.96 id=33% cov=83%
MTSDYTPISCELYSEYELAIMRGRTLKVRWKDRYGMDRvetlRPTDLRTRRHAEFMIARNQlGQRRVLRLDRIV---------------
>UniRef50_Q2BPA6(5-76:80) Putative uncharacterized protein n=1 Tax=Neptuniibacter caesariensis RepID=Q2BPA6_9GAMM  E=1e-11 s/c=0.98 id=38% cov=82%
--QQYTPINCEIHDGYELACMRKAIHNVEWIDQGKTHSeklRFLDLEYSKKGEFLIAENeQKEPRKIRLDSIFS--------------
>UniRef50_A4CFB2(1-82:82) Putative uncharacterized protein n=1 Tax=Pseudoalteromonas tunicata D2 RepID=A4CFB2_9GAMM  E=2e-11 s/c=0.86 id=25% cov=77%
-------MDCADHDFIEVACLYQYRLKISLCNNQQKEGIALTTQVRQqgvlKAELLIIQTSAGNEEIVLDEIKQI-------------
>UniRef50_B9TIC6(1-77:78) Putative uncharacterized protein n=1 Tax=Ricinus communis RepID=B9TIC6_RICCO  E=7e-11 s/c=0.89 id=30% cov=82%
MDQPYIPIDCERHDELLALATLRRPCTLTVArpDGTldNLAGVIEDVYADTGVEYLRLR---GGPTVRLDWIRAL-------------
>UniRef50_C7PBT9(5-77:84) Putative uncharacterized protein n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PBT9_CHIPD  E=4e-06 s/c=0.72 id=30% cov=83%
-NNPYQPIDCNYYDRLEAWATMRTICQIIFRDEEGKEqdvtARIEDVYALNKVEYMRMDNG---LVIRLDSLLSVNN-----------
>UniRef50_Q0KB30(7-77:83) Putative uncharacterized protein h16_A1662 n=1 Tax=Ralstonia eutropha H16 RepID=Q0KB30_RALEH  E=2e-05 s/c=0.70 id=27% cov=75%
----YSPISCEFHDRLEDLATVRRPTQIHYRDAdgllQQRTETITDVYSLGGAEYLTLKTGET---LRLDQLL---------------
>UniRef50_A6F9S9(1-66:67) Putative uncharacterized protein n=1 Tax=Moritella sp. PE36 RepID=A6F9S9_9GAMM  E=9e-05 s/c=0.73 id=26% cov=68%
--------------------MHQYPIKLMLKSGVEIVGKGLDTKRNDNRdECIQMMVDGVTSLVVLDTIltleVTVDNPHF--------
>UniRef50_Q3JEK1(3-83:85) Putative uncharacterized protein n=2 Tax=Nitrosococcus oceani RepID=Q3JEK1_NITOC  E=0.0007 s/c=0.56 id=25% cov=75%
----YIPINCNFHDQLEALATLRKQCHIfyQTMDGKIIETldTITDIYTKNQEEFTVLGSGE---IIRLDRLL---------------
>UniRef50_C1M505(5-92:95) Transcriptional antiterminator n=1 Tax=Citrobacter sp. 30_2 RepID=C1M505_9ENTR  E=5e-18 s/c=1.05 id=36% cov=86%
-TEEYHPIDCDLHDYLEIACMYHYWLRIELTDGTCFDAKALTTcTTVEKEEFLVVGQSENQQKIRLDYLSAIT------------
>UniRef50_C9NTU8(1-82:84) Transcriptional antiterminator n=1 Tax=Vibrio coralliilyticus ATCC BAA-450 RepID=C9NTU8_9VIBR  E=7e-15 s/c=1.00 id=25% cov=85%
------MISCNQYDYIEIACLYHIPVRLVTESGQIVEGKAMTTsYDSHRRESIVIATATGETQLPTEALVSMTalieNPHF--------
>UniRef50_C3NZ10(1-80:81) Transcriptional antiterminator n=31 Tax=Vibrio RepID=C3NZ10_VIBCJ   E=3e-14 s/c=0.99 id=32% cov=79%
------MVSCSQYDYIELACLFHLPVKLTMKSGEVYYGVAADTqRNSQKQECIALRGEEETWLLETDQLSSM-------------
>UniRef50_Q0AJD0(3-86:89) Transcriptional antiterminator, Rof n=2 Tax=Nitrosomonas RepID=Q0AJD0_NITEC  E=3e-13 s/c=0.90 id=31% cov=95%
-----QHISCDLHDYIEVACMYGYQVRLILKDQSTAEGKAKDILTDtETREFLLLETEIGSQQVElifLDKLQVLTpDARFTEVVFSGS
>UniRef50_A1ZYH1(6-79:84) Putative uncharacterized protein n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZYH1_9SPHI  E=1e-12 s/c=1.00 id=29% cov=83%
----YNPINCSLYDYLEAWAVTQTPCKVTYLDAQNKEAyftkTIVDLYIKDKVEYVKWNDG---SSLRLDQLIEINGVRF--------
>UniRef50_B1KQ80(1-80:81) Transcriptional antiterminator, Rof n=1 Tax=Shewanella woodyi ATCC 51908 RepID=B1KQ80_SHEWM  E=3e-12 s/c=0.91 id=32% cov=71%
------MIKCDIYDYIEVACLYKIEVLLTLHSGEEVKGVADTTsINGDKQEFLVIKQGTETLNIEL-------------------
>UniRef50_C9PFC4(1-82:83) Transcriptional antiterminator n=1 Tax=Vibrio furnissii CIP 102972 RepID=C9PFC4_VIBFU  E=3e-12 s/c=0.89 id=30% cov=67%
------MISCSQYDAIELACVYQFPVAVTLLNGDVVQGIAKGTgYNAERQECLVLQQAECER-----------------------
>UniRef50_B0TMP4(1-99:100) Transcriptional antiterminator, Rof n=9 Tax=Gammaproteobacteria RepID=B0TMP4_SHEHH  E=7e-12 s/c=0.73 id=34% cov=45%
------MISCNQYDYIEIVCLYRYPIALKLKSGETISGIALDT-----------------------------------------
>UniRef50_A4STJ9(3-57:84) Modulator of Rho-dependent transcription termination n=1 Tax=Aeromonas salmonicida subsp. salmonicida A449 RepID=A4STJ9_AERS4  E=2e-11 s/c=1.28 id=43% cov=58%
----YQPISCDLYDWLEIAASWQLPVTLASRDGHQWDDKIRTIEASEGVEYL--------------------------------
>UniRef50_A4BCS7(6-76:93) Putative uncharacterized protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BCS7_9GAMM  E=2e-10 s/c=0.95 id=25% cov=86%
-------LRCDLQDHFEHVCVLQLPVRVRLTNGTRLAGTADTLRVVQGLESLQLQSQRGIELVPLNEIATLSYPQAGQ------
>UniRef50_A8H694(1-101:102) Transcriptional antiterminator, Rof n=1 Tax=Shewanella pealeana ATCC 700345 RepID=A8H694_SHEPA  E=2e-10 s/c=0.66 id=29% cov=45%
------MLSCSQHDYIELVCIFNYPIKLTMKNGDSISGKALDT-----------------------------------------
>UniRef50_Q081B6(3-88:88) Transcriptional antiterminator, Rof n=1 Tax=Shewanella frigidimarina NCIMB 400 RepID=Q081B6_SHEFN  E=2e-10 s/c=0.78 id=24% cov=93%
------PIKCEIYDYIEIICLYRYRVKLTLTDGTHIQGQFdrilyVNRNQQKHEAIAGINQQQQAIEVILTYITSIDvlsqNASFSHISLIE-
>UniRef50_Q0A5U7(7-80:83) Transcriptional antiterminator, Rof n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0A5U7_ALHEH  E=4e-10 s/c=0.89 id=34% cov=85%
-NDDYRPISCERYAELELHIMHARRLRVAWRTpqGQHIDTlIPEDLHTRDGAEYLVARNRLGEAfIIRLDQLQRF-------------
>UniRef50_Q12MD8(21-105:106) Transcriptional antiterminator, Rof n=1 Tax=Shewanella denitrificans OS217 RepID=Q12MD8_SHEDO  E=2e-08 s/c=0.71 id=22% cov=88%
-------IRCADYDYIEIMCLHRYRVTVMMKDLTQYEGQFHTTsiiefEGIKREAIVGFDINQAPIQLMFEDILSISvhddKAQFSRLQ----
>UniRef50_B0C103(7-73:86) Putative uncharacterized protein n=1 Tax=Acaryochloris marina MBIC11017 RepID=B0C103_ACAM1  E=4e-05 s/c=0.74 id=18% cov=71%
---------CSFHDELEAWATLRQDCQIIYRDekgqNQTVNSKIIDVYAANQADFIKLQDG---SIIRLDYLISV-------------
