Phyre 2 Results for P0AFW8

Email | l.a.kelley@imperial.ac.uk
Description | P0AFW8
Date | Thu Jan 5 11:27:27 GMT 2012
Unique Job ID | 02b3861c6af67655

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | d1sg5a1 |
|  | 100.0 | 100 | Fold:Rof/RNase P subunit-like Superfamily:Rof/RNase P subunit-like Family:Rof-like
2 | c2e12B_ |
|  | 54.5 | 22 | PDB header:translation Chain: B: PDB Molecule:hypothetical protein xcc3642; PDBTitle: the crystal structure of xc5848 from xanthomonas campestris2 adopting a novel variant of sm-like motif
3 | d1m5q1_ |
|  | 51.9 | 16 | Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP
4 | c3cw15_ |
|  | 41.4 | 25 | PDB header:splicing Chain: 5: PDB Molecule:small nuclear ribonucleoprotein g; PDB Fragment:residues 1-215; PDBTitle: crystal structure of human spliceosomal u1 snrnp
5 | c1kq1W_ |
|  | 40.6 | 13 | PDB header:translation Chain: W: PDB Molecule:host factor for q beta; PDBTitle: 1.55 a crystal structure of the pleiotropic translational2 regulator, hfq
6 | c2cghB_ |
|  | 40.1 | 19 | PDB header:ligase Chain: B: PDB Molecule:biotin ligase; PDBTitle: crystal structure of biotin ligase from mycobacterium2 tuberculosis
7 | c3swnC_ |
|  | 37.7 | 15 | PDB header:rna binding protein Chain: C: PDB Molecule:u6 snrna-associated sm-like protein lsm7; PDBTitle: structure of the lsm657 complex: an assembly intermediate of the lsm12 7 and lsm2 8 rings
8 | c1b34A_ |
|  | 30.7 | 27 | PDB header:rna binding protein Chain: A: PDB Molecule:protein (small nuclear ribonucleoprotein sm d1); PDBTitle: crystal structure of the d1d2 sub-complex from the human snrnp core2 domain
9 | d1b34a_ |
|  | 30.7 | 27 | Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP
10 | c3swnT_ |
|  | 27.6 | 19 | PDB header:rna binding protein Chain: T: PDB Molecule:u6 snrna-associated sm-like protein lsm6; PDBTitle: structure of the lsm657 complex: an assembly intermediate of the lsm12 7 and lsm2 8 rings
11 | c3d6wA_ |
|  | 26.6 | 8 | PDB header:dna binding protein Chain: A: PDB Molecule:methyl-accepting/dna response regulator; PDBTitle: lyttr dna-binding domain of putative methyl-accepting/dna response2 regulator from bacillus cereus.
12 | c3cw1D_ |
|  | 25.1 | 24 | PDB header:splicing Chain: D: PDB Molecule:small nuclear ribonucleoprotein sm d3; PDBTitle: crystal structure of human spliceosomal u1 snrnp
13 | d1d3bb_ |
|  | 22.9 | 21 | Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP
14 | d1b34b_ |
|  | 20.4 | 11 | Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP
15 | c1b34B_ |
|  | 20.4 | 11 | PDB header:rna binding protein Chain: B: PDB Molecule:protein (small nuclear ribonucleoprotein sm d2); PDBTitle: crystal structure of the d1d2 sub-complex from the human snrnp core2 domain
16 | c3qiiA_ |
|  | 19.3 | 17 | PDB header:transcription regulator Chain: A: PDB Molecule:phd finger protein 20; PDBTitle: crystal structure of tudor domain 2 of human phd finger protein 20
17 | c2xk0A_ |
|  | 18.1 | 13 | PDB header:transcription Chain: A: PDB Molecule:polycomb protein pcl; PDBTitle: solution structure of the tudor domain from drosophila2 polycomblike (pcl)
18 | c3cw1Z_ |
|  | 17.6 | 15 | PDB header:splicing Chain: Z: PDB Molecule:small nuclear ribonucleoprotein f; PDBTitle: crystal structure of human spliceosomal u1 snrnp
19 | d1hk9a_ |
|  | 17.2 | 19 | Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Pleiotropic translational regulator Hfq
20 | c2fwkB_ |
|  | 16.9 | 5 | PDB header:dna binding protein Chain: B: PDB Molecule:u6 snrna-associated sm-like protein lsm5; PDBTitle: crystal structure of cryptosporidium parvum u6 snrna-associated sm-2 like protein lsm5
21 | d1a9xb1 |
| not modelled | 16.5 | 24 | Fold:The "swivelling" beta/beta/alpha domain Superfamily:Carbamoyl phosphate synthetase, small subunit N-terminal domain Family:Carbamoyl phosphate synthetase, small subunit N-terminal domain
22 | c3qhsD_ |
| not modelled | 15.7 | 19 | PDB header:rna binding protein Chain: D: PDB Molecule:protein hfq; PDBTitle: crystal structure of full-length hfq from escherichia coli
23 | d1i4k1_ |
| not modelled | 15.2 | 15 | Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP
24 | c3bw1A_ |
| not modelled | 14.5 | 11 | PDB header:rna binding protein Chain: A: PDB Molecule:u6 snrna-associated sm-like protein lsm3; PDBTitle: crystal structure of homomeric yeast lsm3 exhibiting novel octameric2 ring organisation
25 | d1th7a1 |
| not modelled | 14.1 | 15 | Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP
26 | c3cw1A_ |
| not modelled | 13.5 | 16 | PDB header:splicing Chain: A: PDB Molecule:small nuclear ribonucleoprotein-associated proteins b and PDBTitle: crystal structure of human spliceosomal u1 snrnp
27 | c3swnA_ |
| not modelled | 13.3 | 10 | PDB header:rna binding protein Chain: A: PDB Molecule:u6 snrna-associated sm-like protein lsm5; PDBTitle: structure of the lsm657 complex: an assembly intermediate of the lsm12 7 and lsm2 8 rings
28 | c3hsbB_ |
| not modelled | 13.3 | 16 | PDB header:rna binding protein/rna Chain: B: PDB Molecule:protein hfq; PDBTitle: crystal structure of ymah (hfq) from bacillus subtilis in complex with2 an rna aptamer
29 | c2ewnA_ |
| not modelled | 12.6 | 11 | PDB header:ligase, transcription Chain: A: PDB Molecule:bira bifunctional protein; PDBTitle: ecoli biotin repressor with co-repressor analog
30 | d1mgqa_ |
| not modelled | 12.0 | 11 | Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP
31 | c2ej9A_ |
| not modelled | 11.9 | 9 | PDB header:ligase Chain: A: PDB Molecule:putative biotin ligase; PDBTitle: crystal structure of biotin protein ligase from2 methanococcus jannaschii
32 | d1i8fa_ |
| not modelled | 11.8 | 10 | Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP
33 | d1jbma_ |
| not modelled | 11.2 | 12 | Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP
34 | d1d3ba_ |
| not modelled | 11.2 | 23 | Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP
35 | c3p8dB_ |
| not modelled | 11.0 | 17 | PDB header:protein binding Chain: B: PDB Molecule:medulloblastoma antigen mu-mb-50.72; PDBTitle: crystal structure of the second tudor domain of human phf20 (homodimer2 form)
36 | c3pgwQ_ |
| not modelled | 10.3 | 13 | PDB header:splicing/dna/rna Chain: Q: PDB Molecule:sm b; PDBTitle: crystal structure of human u1 snrnp
37 | d1xg8a_ |
| not modelled | 10.2 | 23 | Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:YuzD-like
38 | c1ssfA_ |
| not modelled | 9.5 | 11 | PDB header:cell cycle Chain: A: PDB Molecule:transformation related protein 53 binding PDBTitle: solution structure of the mouse 53bp1 fragment (residues2 1463-1617)
39 | d1etha1 |
| not modelled | 9.1 | 17 | Fold:Lipase/lipooxygenase domain (PLAT/LH2 domain) Superfamily:Lipase/lipooxygenase domain (PLAT/LH2 domain) Family:Colipase-binding domain
40 | d2zgwa1 |
| not modelled | 9.1 | 27 | Fold:SH3-like barrel Superfamily:C-terminal domain of transcriptional repressors Family:Biotin repressor (BirA)
41 | c1wwtA_ |
| not modelled | 8.9 | 29 | PDB header:ligase Chain: A: PDB Molecule:threonyl-trna synthetase, cytoplasmic; PDBTitle: solution structure of the tgs domain from human threonyl-2 trna synthetase
42 | c1keeH_ |
| not modelled | 8.8 | 22 | PDB header:ligase Chain: H: PDB Molecule:carbamoyl-phosphate synthetase small chain; PDBTitle: inactivation of the amidotransferase activity of carbamoyl phosphate2 synthetase by the antibiotic acivicin
43 | d2fwka1 |
| not modelled | 8.8 | 4 | Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP
44 | c1y96C_ |
| not modelled | 8.8 | 7 | PDB header:rna binding protein Chain: C: PDB Molecule:gem-associated protein 6; PDBTitle: crystal structure of the gemin6/gemin7 heterodimer from the2 human smn complex
45 | d1d3bl_ |
| not modelled | 8.7 | 16 | Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP
46 | d1h641_ |
| not modelled | 8.5 | 12 | Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP
47 | c3mlqE_ |
| not modelled | 8.0 | 21 | PDB header:transferase/transcription Chain: E: PDB Molecule:transcription-repair coupling factor; PDBTitle: crystal structure of the thermus thermophilus transcription-repair2 coupling factor rna polymerase interacting domain with the thermus3 aquaticus rna polymerase beta1 domain
48 | d1u1sa1 |
| not modelled | 7.8 | 19 | Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Pleiotropic translational regulator Hfq
49 | c2pvsB_ |
| not modelled | 7.7 | 11 | PDB header:hydrolase Chain: B: PDB Molecule:pancreatic lipase-related protein 2; PDBTitle: structure of human pancreatic lipase related protein 22 mutant n336q
50 | d1n9ra_ |
| not modelled | 7.3 | 11 | Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP
51 | c2advB_ |
| not modelled | 6.7 | 17 | PDB header:hydrolase Chain: B: PDB Molecule:glutaryl 7- aminocephalosporanic acid acylase; PDBTitle: crystal structures of glutaryl 7-aminocephalosporanic acid acylase:2 mutational study of activation mechanism
52 | c3mlqH_ |
| not modelled | 5.9 | 21 | PDB header:transferase/transcription Chain: H: PDB Molecule:transcription-repair coupling factor; PDBTitle: crystal structure of the thermus thermophilus transcription-repair2 coupling factor rna polymerase interacting domain with the thermus3 aquaticus rna polymerase beta1 domain
53 | c1n9sH_ |
| not modelled | 5.8 | 9 | PDB header:translation Chain: H: PDB Molecule:small nuclear ribonucleoprotein f; PDBTitle: crystal structure of yeast smf in spacegroup p43212
54 | d1kn0a_ |
| not modelled | 5.8 | 29 | Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:The homologous-pairing domain of Rad52 recombinase
55 | d1kq1a_ |
| not modelled | 5.5 | 13 | Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Pleiotropic translational regulator Hfq
56 | c3pgwB_ |
| not modelled | 5.5 | 13 | PDB header:splicing/dna/rna Chain: B: PDB Molecule:sm b; PDBTitle: crystal structure of human u1 snrnp
57 | d1n9sc_ |
| not modelled | 5.2 | 11 | Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP
58 | d2hqxa1 |
| not modelled | 5.0 | 13 | Fold:SH3-like barrel Superfamily:Tudor/PWWP/MBT Family:Tudor domain