Phyre 2 Results for P0AFW8

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Email | l.a.kelley@imperial.ac.uk
Description | P0AFW8
Date | Thu Jan 5 11:27:27 GMT 2012
Unique Job ID | 02b3861c6af67655

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template d1sg5a1
Top template information
Fold:Rof/RNase P subunit-like Superfamily:Rof/RNase P subunit-like Family:Rof-like
Confidence and coverage
Confidence: | 100.0% | Coverage: | 100%
84 residues (100% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | N | D | T | Y | Q | P | I | N | C | D | D | Y | D | N | L | E | L | A | C | Q | H | H | L | M | L | T | L | E | L | K | D | G | E | K | L | Q | A | K | A | S | D | L | V | S | R | K | N | V | E | Y | L | V | V | E | A | A | G | E | T
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | .
Sequence |  | R | E | L | R | L | D | K | I | T | S | F | S | H | P | E | I | G | T | V | V | V | S | E | S
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| d1sg5a1 |

### PDB 1sg5 chain A domain 1

Region: 1 - 84
Aligned: 84
Modelled: 84
Confidence: 100.0%
Identity: 100%
Fold: Rof/RNase P subunit-like
Superfamily: Rof/RNase P subunit-like
Family: Rof-like

Phyre2
2 |
| c2e12B_ |

### PDB 2e12 chain B

Region: 23 - 71
Aligned: 49
Modelled: 49
Confidence: 54.5%
Identity: 22%
PDB header:translation
Chain: B: PDB Molecule:hypothetical protein xcc3642;
PDBTitle: the crystal structure of xc5848 from xanthomonas campestris2 adopting a novel variant of sm-like motif

Phyre2
3 |
| d1m5q1_ |

### PDB 1m5q chain 1

Region: 15 - 84
Aligned: 56
Modelled: 53
Confidence: 51.9%
Identity: 16%
Fold: Sm-like fold
Superfamily: Sm-like ribonucleoproteins
Family: Sm motif of small nuclear ribonucleoproteins, SNRNP

Phyre2
4 |
| c3cw15_ |

### PDB 3cw1 chain 5

Region: 16 - 43
Aligned: 28
Modelled: 28
Confidence: 41.4%
Identity: 25%
PDB header:splicing
Chain: 5: PDB Molecule:small nuclear ribonucleoprotein g;
PDB Fragment:residues 1-215; PDBTitle: crystal structure of human spliceosomal u1 snrnp

Phyre2
5 |
| c1kq1W_ |

### PDB 1kq1 chain W

Region: 12 - 42
Aligned: 31
Modelled: 31
Confidence: 40.6%
Identity: 13%
PDB header:translation
Chain: W: PDB Molecule:host factor for q beta;
PDBTitle: 1.55 a crystal structure of the pleiotropic translational2 regulator, hfq

Phyre2
6 |
| c2cghB_ |

### PDB 2cgh chain B

Region: 14 - 63
Aligned: 47
Modelled: 50
Confidence: 40.1%
Identity: 19%
PDB header:ligase
Chain: B: PDB Molecule:biotin ligase;
PDBTitle: crystal structure of biotin ligase from mycobacterium2 tuberculosis

Phyre2
7 |
| c3swnC_ |

### PDB 3swn chain C

Region: 16 - 72
Aligned: 53
Modelled: 57
Confidence: 37.7%
Identity: 15%
PDB header:rna binding protein
Chain: C: PDB Molecule:u6 snrna-associated sm-like protein lsm7;
PDBTitle: structure of the lsm657 complex: an assembly intermediate of the lsm12 7 and lsm2 8 rings

Phyre2
8 |
| c1b34A_ |

### PDB 1b34 chain A

Region: 18 - 43
Aligned: 26
Modelled: 26
Confidence: 30.7%
Identity: 27%
PDB header:rna binding protein
Chain: A: PDB Molecule:protein (small nuclear ribonucleoprotein sm d1);
PDBTitle: crystal structure of the d1d2 sub-complex from the human snrnp core2 domain

Phyre2
9 |
| d1b34a_ |

### PDB 1b34 chain A

Region: 18 - 43
Aligned: 26
Modelled: 26
Confidence: 30.7%
Identity: 27%
Fold: Sm-like fold
Superfamily: Sm-like ribonucleoproteins
Family: Sm motif of small nuclear ribonucleoproteins, SNRNP

Phyre2
10 |
| c3swnT_ |

### PDB 3swn chain T

Region: 18 - 43
Aligned: 26
Modelled: 26
Confidence: 27.6%
Identity: 19%
PDB header:rna binding protein
Chain: T: PDB Molecule:u6 snrna-associated sm-like protein lsm6;
PDBTitle: structure of the lsm657 complex: an assembly intermediate of the lsm12 7 and lsm2 8 rings

Phyre2
11 |
| c3d6wA_ |

### PDB 3d6w chain A

Region: 48 - 83
Aligned: 36
Modelled: 36
Confidence: 26.6%
Identity: 8%
PDB header:dna binding protein
Chain: A: PDB Molecule:methyl-accepting/dna response regulator;
PDBTitle: lyttr dna-binding domain of putative methyl-accepting/dna response2 regulator from bacillus cereus.

Phyre2
12 |
| c3cw1D_ |

### PDB 3cw1 chain D

Region: 23 - 43
Aligned: 21
Modelled: 21
Confidence: 25.1%
Identity: 24%
PDB header:splicing
Chain: D: PDB Molecule:small nuclear ribonucleoprotein sm d3;
PDBTitle: crystal structure of human spliceosomal u1 snrnp

Phyre2
13 |
| d1d3bb_ |

### PDB 1d3b chain B

Region: 21 - 72
Aligned: 52
Modelled: 52
Confidence: 22.9%
Identity: 21%
Fold: Sm-like fold
Superfamily: Sm-like ribonucleoproteins
Family: Sm motif of small nuclear ribonucleoproteins, SNRNP

Phyre2
14 |
| d1b34b_ |

### PDB 1b34 chain B

Region: 14 - 74
Aligned: 61
Modelled: 61
Confidence: 20.4%
Identity: 11%
Fold: Sm-like fold
Superfamily: Sm-like ribonucleoproteins
Family: Sm motif of small nuclear ribonucleoproteins, SNRNP

Phyre2
15 |
| c1b34B_ |

### PDB 1b34 chain B

Region: 14 - 74
Aligned: 61
Modelled: 61
Confidence: 20.4%
Identity: 11%
PDB header:rna binding protein
Chain: B: PDB Molecule:protein (small nuclear ribonucleoprotein sm d2);
PDBTitle: crystal structure of the d1d2 sub-complex from the human snrnp core2 domain

Phyre2
16 |
| c3qiiA_ |

### PDB 3qii chain A

Region: 23 - 72
Aligned: 48
Modelled: 50
Confidence: 19.3%
Identity: 17%
PDB header:transcription regulator
Chain: A: PDB Molecule:phd finger protein 20;
PDBTitle: crystal structure of tudor domain 2 of human phd finger protein 20

Phyre2
17 |
| c2xk0A_ |

### PDB 2xk0 chain A

Region: 23 - 73
Aligned: 48
Modelled: 51
Confidence: 18.1%
Identity: 13%
PDB header:transcription
Chain: A: PDB Molecule:polycomb protein pcl;
PDBTitle: solution structure of the tudor domain from drosophila2 polycomblike (pcl)

Phyre2
18 |
| c3cw1Z_ |

### PDB 3cw1 chain Z

Region: 18 - 43
Aligned: 26
Modelled: 26
Confidence: 17.6%
Identity: 15%
PDB header:splicing
Chain: Z: PDB Molecule:small nuclear ribonucleoprotein f;
PDBTitle: crystal structure of human spliceosomal u1 snrnp

Phyre2
19 |
| d1hk9a_ |

### PDB 1hk9 chain A

Region: 12 - 42
Aligned: 31
Modelled: 31
Confidence: 17.2%
Identity: 19%
Fold: Sm-like fold
Superfamily: Sm-like ribonucleoproteins
Family: Pleiotropic translational regulator Hfq

Phyre2
20 |
| c2fwkB_ |

### PDB 2fwk chain B

Region: 23 - 43
Aligned: 21
Modelled: 21
Confidence: 16.9%
Identity: 5%
PDB header:dna binding protein
Chain: B: PDB Molecule:u6 snrna-associated sm-like protein lsm5;
PDBTitle: crystal structure of cryptosporidium parvum u6 snrna-associated sm-2 like protein lsm5

Phyre2
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58 |

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | d1sg5a1 |
|  | 100.0 | 100 | Fold:Rof/RNase P subunit-like Superfamily:Rof/RNase P subunit-like Family:Rof-like
2 | c2e12B_ |
|  | 54.5 | 22 | PDB header:translation Chain: B: PDB Molecule:hypothetical protein xcc3642; PDBTitle: the crystal structure of xc5848 from xanthomonas campestris2 adopting a novel variant of sm-like motif
3 | d1m5q1_ |
|  | 51.9 | 16 | Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP
4 | c3cw15_ |
|  | 41.4 | 25 | PDB header:splicing Chain: 5: PDB Molecule:small nuclear ribonucleoprotein g; PDB Fragment:residues 1-215; PDBTitle: crystal structure of human spliceosomal u1 snrnp
5 | c1kq1W_ |
|  | 40.6 | 13 | PDB header:translation Chain: W: PDB Molecule:host factor for q beta; PDBTitle: 1.55 a crystal structure of the pleiotropic translational2 regulator, hfq
6 | c2cghB_ |
|  | 40.1 | 19 | PDB header:ligase Chain: B: PDB Molecule:biotin ligase; PDBTitle: crystal structure of biotin ligase from mycobacterium2 tuberculosis
7 | c3swnC_ |
|  | 37.7 | 15 | PDB header:rna binding protein Chain: C: PDB Molecule:u6 snrna-associated sm-like protein lsm7; PDBTitle: structure of the lsm657 complex: an assembly intermediate of the lsm12 7 and lsm2 8 rings
8 | c1b34A_ |
|  | 30.7 | 27 | PDB header:rna binding protein Chain: A: PDB Molecule:protein (small nuclear ribonucleoprotein sm d1); PDBTitle: crystal structure of the d1d2 sub-complex from the human snrnp core2 domain
9 | d1b34a_ |
|  | 30.7 | 27 | Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP
10 | c3swnT_ |
|  | 27.6 | 19 | PDB header:rna binding protein Chain: T: PDB Molecule:u6 snrna-associated sm-like protein lsm6; PDBTitle: structure of the lsm657 complex: an assembly intermediate of the lsm12 7 and lsm2 8 rings
11 | c3d6wA_ |
|  | 26.6 | 8 | PDB header:dna binding protein Chain: A: PDB Molecule:methyl-accepting/dna response regulator; PDBTitle: lyttr dna-binding domain of putative methyl-accepting/dna response2 regulator from bacillus cereus.
12 | c3cw1D_ |
|  | 25.1 | 24 | PDB header:splicing Chain: D: PDB Molecule:small nuclear ribonucleoprotein sm d3; PDBTitle: crystal structure of human spliceosomal u1 snrnp
13 | d1d3bb_ |
|  | 22.9 | 21 | Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP
14 | d1b34b_ |
|  | 20.4 | 11 | Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP
15 | c1b34B_ |
|  | 20.4 | 11 | PDB header:rna binding protein Chain: B: PDB Molecule:protein (small nuclear ribonucleoprotein sm d2); PDBTitle: crystal structure of the d1d2 sub-complex from the human snrnp core2 domain
16 | c3qiiA_ |
|  | 19.3 | 17 | PDB header:transcription regulator Chain: A: PDB Molecule:phd finger protein 20; PDBTitle: crystal structure of tudor domain 2 of human phd finger protein 20
17 | c2xk0A_ |
|  | 18.1 | 13 | PDB header:transcription Chain: A: PDB Molecule:polycomb protein pcl; PDBTitle: solution structure of the tudor domain from drosophila2 polycomblike (pcl)
18 | c3cw1Z_ |
|  | 17.6 | 15 | PDB header:splicing Chain: Z: PDB Molecule:small nuclear ribonucleoprotein f; PDBTitle: crystal structure of human spliceosomal u1 snrnp
19 | d1hk9a_ |
|  | 17.2 | 19 | Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Pleiotropic translational regulator Hfq
20 | c2fwkB_ |
|  | 16.9 | 5 | PDB header:dna binding protein Chain: B: PDB Molecule:u6 snrna-associated sm-like protein lsm5; PDBTitle: crystal structure of cryptosporidium parvum u6 snrna-associated sm-2 like protein lsm5
21 | d1a9xb1 |
| not modelled | 16.5 | 24 | Fold:The "swivelling" beta/beta/alpha domain Superfamily:Carbamoyl phosphate synthetase, small subunit N-terminal domain Family:Carbamoyl phosphate synthetase, small subunit N-terminal domain
22 | c3qhsD_ |
| not modelled | 15.7 | 19 | PDB header:rna binding protein Chain: D: PDB Molecule:protein hfq; PDBTitle: crystal structure of full-length hfq from escherichia coli
23 | d1i4k1_ |
| not modelled | 15.2 | 15 | Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP
24 | c3bw1A_ |
| not modelled | 14.5 | 11 | PDB header:rna binding protein Chain: A: PDB Molecule:u6 snrna-associated sm-like protein lsm3; PDBTitle: crystal structure of homomeric yeast lsm3 exhibiting novel octameric2 ring organisation
25 | d1th7a1 |
| not modelled | 14.1 | 15 | Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP
26 | c3cw1A_ |
| not modelled | 13.5 | 16 | PDB header:splicing Chain: A: PDB Molecule:small nuclear ribonucleoprotein-associated proteins b and PDBTitle: crystal structure of human spliceosomal u1 snrnp
27 | c3swnA_ |
| not modelled | 13.3 | 10 | PDB header:rna binding protein Chain: A: PDB Molecule:u6 snrna-associated sm-like protein lsm5; PDBTitle: structure of the lsm657 complex: an assembly intermediate of the lsm12 7 and lsm2 8 rings
28 | c3hsbB_ |
| not modelled | 13.3 | 16 | PDB header:rna binding protein/rna Chain: B: PDB Molecule:protein hfq; PDBTitle: crystal structure of ymah (hfq) from bacillus subtilis in complex with2 an rna aptamer
29 | c2ewnA_ |
| not modelled | 12.6 | 11 | PDB header:ligase, transcription Chain: A: PDB Molecule:bira bifunctional protein; PDBTitle: ecoli biotin repressor with co-repressor analog
30 | d1mgqa_ |
| not modelled | 12.0 | 11 | Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP
31 | c2ej9A_ |
| not modelled | 11.9 | 9 | PDB header:ligase Chain: A: PDB Molecule:putative biotin ligase; PDBTitle: crystal structure of biotin protein ligase from2 methanococcus jannaschii
32 | d1i8fa_ |
| not modelled | 11.8 | 10 | Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP
33 | d1jbma_ |
| not modelled | 11.2 | 12 | Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP
34 | d1d3ba_ |
| not modelled | 11.2 | 23 | Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP
35 | c3p8dB_ |
| not modelled | 11.0 | 17 | PDB header:protein binding Chain: B: PDB Molecule:medulloblastoma antigen mu-mb-50.72; PDBTitle: crystal structure of the second tudor domain of human phf20 (homodimer2 form)
36 | c3pgwQ_ |
| not modelled | 10.3 | 13 | PDB header:splicing/dna/rna Chain: Q: PDB Molecule:sm b; PDBTitle: crystal structure of human u1 snrnp
37 | d1xg8a_ |
| not modelled | 10.2 | 23 | Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:YuzD-like
38 | c1ssfA_ |
| not modelled | 9.5 | 11 | PDB header:cell cycle Chain: A: PDB Molecule:transformation related protein 53 binding PDBTitle: solution structure of the mouse 53bp1 fragment (residues2 1463-1617)
39 | d1etha1 |
| not modelled | 9.1 | 17 | Fold:Lipase/lipooxygenase domain (PLAT/LH2 domain) Superfamily:Lipase/lipooxygenase domain (PLAT/LH2 domain) Family:Colipase-binding domain
40 | d2zgwa1 |
| not modelled | 9.1 | 27 | Fold:SH3-like barrel Superfamily:C-terminal domain of transcriptional repressors Family:Biotin repressor (BirA)
41 | c1wwtA_ |
| not modelled | 8.9 | 29 | PDB header:ligase Chain: A: PDB Molecule:threonyl-trna synthetase, cytoplasmic; PDBTitle: solution structure of the tgs domain from human threonyl-2 trna synthetase
42 | c1keeH_ |
| not modelled | 8.8 | 22 | PDB header:ligase Chain: H: PDB Molecule:carbamoyl-phosphate synthetase small chain; PDBTitle: inactivation of the amidotransferase activity of carbamoyl phosphate2 synthetase by the antibiotic acivicin
43 | d2fwka1 |
| not modelled | 8.8 | 4 | Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP
44 | c1y96C_ |
| not modelled | 8.8 | 7 | PDB header:rna binding protein Chain: C: PDB Molecule:gem-associated protein 6; PDBTitle: crystal structure of the gemin6/gemin7 heterodimer from the2 human smn complex
45 | d1d3bl_ |
| not modelled | 8.7 | 16 | Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP
46 | d1h641_ |
| not modelled | 8.5 | 12 | Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP
47 | c3mlqE_ |
| not modelled | 8.0 | 21 | PDB header:transferase/transcription Chain: E: PDB Molecule:transcription-repair coupling factor; PDBTitle: crystal structure of the thermus thermophilus transcription-repair2 coupling factor rna polymerase interacting domain with the thermus3 aquaticus rna polymerase beta1 domain
48 | d1u1sa1 |
| not modelled | 7.8 | 19 | Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Pleiotropic translational regulator Hfq
49 | c2pvsB_ |
| not modelled | 7.7 | 11 | PDB header:hydrolase Chain: B: PDB Molecule:pancreatic lipase-related protein 2; PDBTitle: structure of human pancreatic lipase related protein 22 mutant n336q
50 | d1n9ra_ |
| not modelled | 7.3 | 11 | Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP
51 | c2advB_ |
| not modelled | 6.7 | 17 | PDB header:hydrolase Chain: B: PDB Molecule:glutaryl 7- aminocephalosporanic acid acylase; PDBTitle: crystal structures of glutaryl 7-aminocephalosporanic acid acylase:2 mutational study of activation mechanism
52 | c3mlqH_ |
| not modelled | 5.9 | 21 | PDB header:transferase/transcription Chain: H: PDB Molecule:transcription-repair coupling factor; PDBTitle: crystal structure of the thermus thermophilus transcription-repair2 coupling factor rna polymerase interacting domain with the thermus3 aquaticus rna polymerase beta1 domain
53 | c1n9sH_ |
| not modelled | 5.8 | 9 | PDB header:translation Chain: H: PDB Molecule:small nuclear ribonucleoprotein f; PDBTitle: crystal structure of yeast smf in spacegroup p43212
54 | d1kn0a_ |
| not modelled | 5.8 | 29 | Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:The homologous-pairing domain of Rad52 recombinase
55 | d1kq1a_ |
| not modelled | 5.5 | 13 | Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Pleiotropic translational regulator Hfq
56 | c3pgwB_ |
| not modelled | 5.5 | 13 | PDB header:splicing/dna/rna Chain: B: PDB Molecule:sm b; PDBTitle: crystal structure of human u1 snrnp
57 | d1n9sc_ |
| not modelled | 5.2 | 11 | Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP
58 | d2hqxa1 |
| not modelled | 5.0 | 13 | Fold:SH3-like barrel Superfamily:Tudor/PWWP/MBT Family:Tudor domain

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0