Phyre 2 alignment of P0AFW8 with c1kq1W_

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Job Description | P0AFW8
Confidence | 40.62% | Date | Thu Jan 5 11:27:27 GMT 2012
Rank | 5 | Aligned Residues | 31
% Identity | 13% | Template | c1kq1W_
PDB info | PDB header:translation | Chain: W: PDB Molecule:host factor for q beta; | PDBTitle: 1.55 a crystal structure of the pleiotropic translational2 regulator, hfq
Resolution | 1.55 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

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Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
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Query Sequence |  | D | Y | D | N | L | E | L | A | C | Q | H | H | L | M | L | T | L | E | L | K | D | G | E | K | L | Q | A | K | A | S | D
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
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Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | Q | D | K | A | L | E | N | F | K | A | N | Q | T | E | V | T | V | F | F | L | N | G | F | Q | M | K | G | V | I | E | E
Template Known Secondary structure |  |  |  |  |  |  |  |  |  |  |  | T | T |  |  |  |  |  |  |  | T | T | S |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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