Phyre 2 alignment of P0AFW8 with c2fwkB_

Return to main results | Retrieve Phyre Job Id

Job Description | P0AFW8
Confidence | 16.88% | Date | Thu Jan 5 11:27:27 GMT 2012
Rank | 20 | Aligned Residues | 21
% Identity | 5% | Template | c2fwkB_
PDB info | PDB header:dna binding protein | Chain: B: PDB Molecule:u6 snrna-associated sm-like protein lsm5; | PDBTitle: crystal structure of cryptosporidium parvum u6 snrna-associated sm-2 like protein lsm5
Resolution | 2.14 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 23 | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | H | L | M | L | T | L | E | L | K | D | G | E | K | L | Q | A | K | A | S | D | L
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | G | N | R | I | Y | V | V | M | K | G | D | K | E | F | S | G | V | L | R | G | F
Template Known Secondary structure |  | T | S |  |  |  |  |  |  | S | T | T |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 38 | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | .

Download: | Text version | FASTA pairwise alignment | 3D Model in PDB format

View in Jmol

|  | Close Jmol

Send structure to FirstGlance for more viewing options

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys |
Disclaimer
Terms and Conditions