BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= batch____
         (84 letters)

Database: uniref50.fasta 
           3,077,464 sequences; 1,040,396,356 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P0AFW8 Protein rof n=144 Tax=Enterobacteriaceae RepID=R...   112   5e-24
UniRef50_D0KJR0 Transcriptional antiterminator, Rof n=14 Tax=Ent...   106   2e-22
UniRef50_D0FPX3 Rho-binding antiterminator protein n=2 Tax=Erwin...    99   2e-20
UniRef50_A9L641 Transcriptional antiterminator, Rof n=8 Tax=Gamm...    94   1e-18
UniRef50_C1M505 Transcriptional antiterminator n=1 Tax=Citrobact...    91   8e-18
UniRef50_Q3KB29 Modulator of Rho-dependent transcription termina...    90   3e-17
UniRef50_Q8D5E4 Transcriptional antiterminator n=2 Tax=Vibrio vu...    87   1e-16
UniRef50_A7JY17 Transcriptional antiterminator n=8 Tax=Vibrio Re...    86   4e-16
UniRef50_Q1N2D2 Putative uncharacterized protein n=1 Tax=Bermane...    85   6e-16
UniRef50_C3NZ10 Transcriptional antiterminator n=31 Tax=Vibrio R...    84   1e-15
UniRef50_Q15V95 Transcriptional antiterminator, Rof n=1 Tax=Pseu...    84   2e-15
UniRef50_A3Y5G8 Putative uncharacterized protein n=1 Tax=Marinom...    83   3e-15
UniRef50_B3PH51 Modulator of Rho-dependent transcription termina...    82   5e-15
UniRef50_A0Y0U5 Putative uncharacterized protein n=1 Tax=Alterom...    82   5e-15
UniRef50_Q2C9D0 Transcriptional antiterminator n=2 Tax=Photobact...    82   6e-15
UniRef50_B5EMC6 Transcriptional antiterminator, Rof n=2 Tax=Acid...    81   8e-15
UniRef50_B1KQ80 Transcriptional antiterminator, Rof n=1 Tax=Shew...    80   2e-14
UniRef50_A3Q9J2 Transcriptional antiterminator, Rof n=7 Tax=Shew...    80   3e-14
UniRef50_C9NTU8 Transcriptional antiterminator n=1 Tax=Vibrio co...    79   4e-14
UniRef50_B9ZK57 Transcriptional antiterminator, Rof n=1 Tax=Thio...    79   5e-14
UniRef50_UPI0001AEC500 hypothetical protein AmacA2_18706 n=1 Tax...    78   1e-13
UniRef50_Q0AJD0 Transcriptional antiterminator, Rof n=2 Tax=Nitr...    78   1e-13
UniRef50_C6MBY6 Transcriptional antiterminator, Rof n=1 Tax=Nitr...    75   7e-13
UniRef50_C9PFC4 Transcriptional antiterminator n=1 Tax=Vibrio fu...    75   9e-13
UniRef50_A4BCS7 Putative uncharacterized protein n=1 Tax=Reineke...    74   1e-12
UniRef50_B0TMP4 Transcriptional antiterminator, Rof n=9 Tax=Gamm...    72   4e-12
UniRef50_Q0A5U7 Transcriptional antiterminator, Rof n=1 Tax=Alka...    71   8e-12
UniRef50_A4CFB2 Putative uncharacterized protein n=1 Tax=Pseudoa...    71   8e-12
UniRef50_B8GPB7 Transcriptional antiterminator, Rof n=1 Tax=Thio...    71   9e-12
UniRef50_Q47UI2 Putative uncharacterized protein n=1 Tax=Colwell...    71   1e-11
UniRef50_Q2BPA6 Putative uncharacterized protein n=1 Tax=Neptuni...    71   2e-11
UniRef50_A4STJ9 Modulator of Rho-dependent transcription termina...    70   2e-11
UniRef50_Q3SIL6 Transcriptional antiterminator, Rof n=1 Tax=Thio...    69   5e-11
UniRef50_A8H694 Transcriptional antiterminator, Rof n=1 Tax=Shew...    68   9e-11
UniRef50_B8K818 Putative uncharacterized protein n=1 Tax=Vibrio ...    56   3e-07
UniRef50_Q081B6 Transcriptional antiterminator, Rof n=1 Tax=Shew...    53   3e-06
UniRef50_C6NSC5 Transcriptional antiterminator, Rof n=1 Tax=Acid...    51   8e-06
UniRef50_A1ZYH1 Putative uncharacterized protein n=1 Tax=Microsc...    50   2e-05
UniRef50_D1KE28 Putative uncharacterized protein n=1 Tax=uncultu...    49   3e-05
UniRef50_A6F9S9 Putative uncharacterized protein n=1 Tax=Moritel...    48   1e-04
UniRef50_Q12MD8 Transcriptional antiterminator, Rof n=1 Tax=Shew...    45   6e-04
UniRef50_B9TIC6 Putative uncharacterized protein n=1 Tax=Ricinus...    44   0.001
UniRef50_Q0KB30 Putative uncharacterized protein h16_A1662 n=1 T...    44   0.002
UniRef50_C7PBT9 Putative uncharacterized protein n=1 Tax=Chitino...    42   0.005
UniRef50_Q3JEK1 Putative uncharacterized protein n=2 Tax=Nitroso...    41   0.013

>UniRef50_P0AFW8 Protein rof n=144 Tax=Enterobacteriaceae RepID=ROF_ECOLI
          Length = 84

 Score =  112 bits (280), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 84/84 (100%), Positives = 84/84 (100%)

Query: 1  MNDTYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVEYLVVEAAGET 60
          MNDTYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVEYLVVEAAGET
Sbjct: 1  MNDTYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVEYLVVEAAGET 60

Query: 61 RELRLDKITSFSHPEIGTVVVSES 84
          RELRLDKITSFSHPEIGTVVVSES
Sbjct: 61 RELRLDKITSFSHPEIGTVVVSES 84


>UniRef50_D0KJR0 Transcriptional antiterminator, Rof n=14 Tax=Enterobacteriaceae
          RepID=D0KJR0_PECWW
          Length = 86

 Score =  106 bits (266), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 58/84 (69%), Positives = 70/84 (83%)

Query: 1  MNDTYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVEYLVVEAAGET 60
          M++ YQPINCDDYD+LE  CQ  L LTLEL++GE +  KASD++SRK +EYLV+EA+G T
Sbjct: 3  MSNEYQPINCDDYDSLEATCQQSLTLTLELRNGEVVTGKASDMISRKQIEYLVIEASGAT 62

Query: 61 RELRLDKITSFSHPEIGTVVVSES 84
          RELRLD I SFSHPEIG +VVSES
Sbjct: 63 RELRLDHIVSFSHPEIGKIVVSES 86


>UniRef50_D0FPX3 Rho-binding antiterminator protein n=2 Tax=Erwinia pyrifoliae
          RepID=D0FPX3_ERWPY
          Length = 87

 Score =   99 bits (248), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 54/82 (65%), Positives = 69/82 (84%)

Query: 2  NDTYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVEYLVVEAAGETR 61
          N+ Y+PINCDDYDNLELACQ+  +LTL LK+ E+L+A+A  ++SRKNVEYL ++ AG  R
Sbjct: 4  NEVYKPINCDDYDNLELACQNKWLLTLVLKNSEQLEARAEGILSRKNVEYLSIQVAGACR 63

Query: 62 ELRLDKITSFSHPEIGTVVVSE 83
          +LRLD I SFSHP++GTVVVSE
Sbjct: 64 DLRLDHILSFSHPQLGTVVVSE 85


>UniRef50_A9L641 Transcriptional antiterminator, Rof n=8 Tax=Gammaproteobacteria
          RepID=A9L641_SHEB9
          Length = 90

 Score = 94.2 bits (233), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 5/85 (5%)

Query: 3  DTYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSR-KNVEYLVVEAAGETR 61
            Y+ I C+ YD LELAC     L +EL DG + Q +A    +R    E+LV++     +
Sbjct: 2  SDYKMIPCEHYDYLELACLRGYQLKIELIDGTQCQGQAITTQTRADKTEWLVIQQQQNKQ 61

Query: 62 ELRLDKITSFS----HPEIGTVVVS 82
           LRLD I + +    H E G + ++
Sbjct: 62 SLRLDHIVAITPVDVHAEFGRMQIA 86


>UniRef50_C1M505 Transcriptional antiterminator n=1 Tax=Citrobacter sp. 30_2
          RepID=C1M505_9ENTR
          Length = 95

 Score = 91.5 bits (226), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 1/73 (1%)

Query: 2  NDTYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDL-VSRKNVEYLVVEAAGET 60
           + Y PI+CD +D LE+AC +H  L +EL DG    AKA     + +  E+LVV  +   
Sbjct: 5  TEEYHPIDCDLHDYLEIACMYHYWLRIELTDGTCFDAKALTTCTTVEKEEFLVVGQSENQ 64

Query: 61 RELRLDKITSFSH 73
          +++RLD +++ + 
Sbjct: 65 QKIRLDYLSAITA 77


>UniRef50_Q3KB29 Modulator of Rho-dependent transcription termination n=8
          Tax=Gammaproteobacteria RepID=Q3KB29_PSEPF
          Length = 92

 Score = 89.6 bits (221), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 33/85 (38%), Positives = 51/85 (60%), Gaps = 5/85 (5%)

Query: 5  YQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVS-RKNVEYLVVEAAGETREL 63
          YQP+NCD YD LE+AC     L +EL DG++L AKA    +     E+LV+E     +E+
Sbjct: 4  YQPLNCDLYDYLEIACLRGYQLDIELIDGQRLMAKAVTTRTSSDKEEFLVIEQQAAQQEI 63

Query: 64 RLDKITSF----SHPEIGTVVVSES 84
          RLD++ +     ++ E G V+++E 
Sbjct: 64 RLDQLLAITPQETNAEFGRVILAEG 88


>UniRef50_Q8D5E4 Transcriptional antiterminator n=2 Tax=Vibrio vulnificus
          RepID=Q8D5E4_VIBVU
          Length = 82

 Score = 87.2 bits (215), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 5/82 (6%)

Query: 7  PINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRK-NVEYLVVEAAGETRELRL 65
           I+C+ YD LE+AC + + + L LKDG ++     +    +   E L VE  G+   +  
Sbjct: 1  MISCNQYDYLEIACLYRIGVCLTLKDGSEISGVPVNTGFNEHKQECLEVETGGDALWVPT 60

Query: 66 DKITSFSH----PEIGTVVVSE 83
          D I +       P    +   +
Sbjct: 61 DMILTMQALTENPHFTKIEFEQ 82


>UniRef50_A7JY17 Transcriptional antiterminator n=8 Tax=Vibrio RepID=A7JY17_VIBSE
          Length = 81

 Score = 85.7 bits (211), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 5/80 (6%)

Query: 7  PINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDL-VSRKNVEYLVVEAAGETRELRL 65
           + C  YD +E+AC   L + + LK+GE  Q  A D     +  E L ++  GE      
Sbjct: 1  MVTCSQYDFIEIACMFKLPIEITLKNGETHQGNAFDTGYDMQRQECLFLDMDGEHTAFPT 60

Query: 66 DKITSFSH----PEIGTVVV 81
          +++ +       P    V  
Sbjct: 61 EQLVAMRALKANPHFDEVTF 80


>UniRef50_Q1N2D2 Putative uncharacterized protein n=1 Tax=Bermanella marisrubri
          RepID=Q1N2D2_9GAMM
          Length = 81

 Score = 85.3 bits (210), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 14/80 (17%), Positives = 36/80 (45%), Gaps = 5/80 (6%)

Query: 7  PINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDL-VSRKNVEYLVVEAAGETRELRL 65
           + C  +D +E+AC + + + LEL+ GE ++  A D    ++    +++      + + +
Sbjct: 1  MVTCAQHDYIEIACLYQISVCLELEHGEFVKGIALDTAYDQQKRHCILINTDEGDQWIPI 60

Query: 66 DKITSF----SHPEIGTVVV 81
          D + +      +P    +  
Sbjct: 61 DSLCAMHAMSKNPHFSEIYF 80


>UniRef50_C3NZ10 Transcriptional antiterminator n=31 Tax=Vibrio RepID=C3NZ10_VIBCJ
          Length = 81

 Score = 84.2 bits (207), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 5/80 (6%)

Query: 7  PINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDL-VSRKNVEYLVVEAAGETRELRL 65
           ++C  YD +ELAC  HL + L +K GE     A+D   + +  E + +    ET  L  
Sbjct: 1  MVSCSQYDYIELACLFHLPVKLTMKSGEVYYGVAADTQRNSQKQECIALRGEEETWLLET 60

Query: 66 DKITSFSH----PEIGTVVV 81
          D+++S       P    +  
Sbjct: 61 DQLSSMEALSEQPHFSVIHF 80


>UniRef50_Q15V95 Transcriptional antiterminator, Rof n=1 Tax=Pseudoalteromonas
          atlantica T6c RepID=Q15V95_PSEA6
          Length = 90

 Score = 83.8 bits (206), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 5/82 (6%)

Query: 8  INCDDYDNLELACQHHLMLTLELKDGEKLQAKASDL-VSRKNVEYLVVEAAGETRELRLD 66
          + C + D +ELAC  ++ + L L+DG +++  A D   +++  E +V+ +A     + L+
Sbjct: 1  MKCAEQDYIELACLFNMPILLRLRDGSEIKGTAKDTSYNKQKQECIVLHSAEGECSIALN 60

Query: 67 KITSFSH----PEIGTVVVSES 84
           I         P    +  S+S
Sbjct: 61 LIALMQAQHANPHFSEIRFSKS 82


>UniRef50_A3Y5G8 Putative uncharacterized protein n=1 Tax=Marinomonas sp. MED121
          RepID=A3Y5G8_9GAMM
          Length = 83

 Score = 83.0 bits (204), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 38/70 (54%), Gaps = 1/70 (1%)

Query: 7  PINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVE-YLVVEAAGETRELRL 65
           + C+ +D +ELAC +   + L L++G++++ +A D +   + E  L ++   E + + L
Sbjct: 3  MMTCEQHDYIELACVYLYEINLTLRNGDQVKGQALDTLYNDDKEACLCIKQGEEVKLVVL 62

Query: 66 DKITSFSHPE 75
          D+I      +
Sbjct: 63 DQIVGMRACQ 72


>UniRef50_B3PH51 Modulator of Rho-dependent transcription termination (ROF)
          superfamily n=1 Tax=Cellvibrio japonicus Ueda107
          RepID=B3PH51_CELJU
          Length = 81

 Score = 82.2 bits (202), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 35/80 (43%), Gaps = 5/80 (6%)

Query: 7  PINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDL-VSRKNVEYLVVEAAGETRELRL 65
           I+CD +D +E+ C +H  + L L  G  ++  A D   + +  E + +      + + L
Sbjct: 1  MIHCDQHDYIEIVCLYHYPIRLTLTSGATIEGIAQDTQHNDQREECIKLSTDTGEQLVVL 60

Query: 66 DKITSF----SHPEIGTVVV 81
           ++        +P +  VV 
Sbjct: 61 SELKQLDVLVENPHVERVVF 80


>UniRef50_A0Y0U5 Putative uncharacterized protein n=1 Tax=Alteromonadales
          bacterium TW-7 RepID=A0Y0U5_9GAMM
          Length = 83

 Score = 82.2 bits (202), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 1/70 (1%)

Query: 7  PINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDL-VSRKNVEYLVVEAAGETRELRL 65
           I+C+ YD +E+AC HHL + L LK+G+ +   A+D+  +    E + +  +GE + + L
Sbjct: 1  MISCNHYDYIEIACMHHLSIELILKNGDVVCGVAADIKRNALKQECIAINVSGELKLIVL 60

Query: 66 DKITSFSHPE 75
          + I+     E
Sbjct: 61 NTISVLKARE 70


>UniRef50_Q2C9D0 Transcriptional antiterminator n=2 Tax=Photobacterium
          RepID=Q2C9D0_9GAMM
          Length = 80

 Score = 81.9 bits (201), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 5/80 (6%)

Query: 7  PINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDL-VSRKNVEYLVVEAAGETRELRL 65
           I+C  +D +E+AC  HL ++L  ++GE++   A D   +    E + ++       + L
Sbjct: 1  MISCHQHDYIEIACMLHLDVSLTYRNGERISGIAQDTCYNAHREECIELKINNTVSRIVL 60

Query: 66 DKITSFSH----PEIGTVVV 81
          D + S       P   TV  
Sbjct: 61 DHLASMQALTANPHFETVNF 80


>UniRef50_B5EMC6 Transcriptional antiterminator, Rof n=2 Tax=Acidithiobacillus
          ferrooxidans RepID=B5EMC6_ACIF5
          Length = 77

 Score = 81.5 bits (200), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 30/72 (41%)

Query: 1  MNDTYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVEYLVVEAAGET 60
          M+  Y+PI+C+ +  LELA        L + DG        D+ + +  E+L +      
Sbjct: 1  MHSAYKPISCELHSALELAAMRRRPARLHMTDGSWQDGIILDVWTEQGREWLCLRRLDGD 60

Query: 61 RELRLDKITSFS 72
           E+ L  I    
Sbjct: 61 VEIDLTHIQQVQ 72


>UniRef50_B1KQ80 Transcriptional antiterminator, Rof n=1 Tax=Shewanella woodyi
          ATCC 51908 RepID=B1KQ80_SHEWM
          Length = 81

 Score = 79.9 bits (196), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 5/78 (6%)

Query: 7  PINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLV-SRKNVEYLVVEAAGETRELRL 65
           I CD YD +E+AC + + + L L  GE+++  A     +    E+LV++   ET  + L
Sbjct: 1  MIKCDIYDYIEVACLYKIEVLLTLHSGEEVKGVADTTSINGDKQEFLVIKQGTETLNIEL 60

Query: 66 DKITSFSH----PEIGTV 79
            I +       P   ++
Sbjct: 61 VSIKNMKALTPNPHFSSL 78


>UniRef50_A3Q9J2 Transcriptional antiterminator, Rof n=7 Tax=Shewanella
          RepID=A3Q9J2_SHELP
          Length = 93

 Score = 79.5 bits (195), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 4/84 (4%)

Query: 3  DTYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVEYLVVEAAGETRE 62
            Y+ I+C  +D+LELAC     L +E   GE      +        EYL V      + 
Sbjct: 2  QPYRIIDCHVHDHLELACIRGYQLLIETSTGEMRATAITLTTQADKSEYLTVRNEAGEQA 61

Query: 63 LRLDKITSFS----HPEIGTVVVS 82
          +RLD I + +          VV++
Sbjct: 62 IRLDHIQAITPLTQGAAFDRVVIA 85


>UniRef50_C9NTU8 Transcriptional antiterminator n=1 Tax=Vibrio coralliilyticus
          ATCC BAA-450 RepID=C9NTU8_9VIBR
          Length = 84

 Score = 79.2 bits (194), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 38/82 (46%), Gaps = 5/82 (6%)

Query: 7  PINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDL-VSRKNVEYLVVEAAGETRELRL 65
           I+C+ YD +E+AC +H+ + L  + G+ ++ KA          E +V+  A    +L  
Sbjct: 1  MISCNQYDYIEIACLYHIPVRLVTESGQIVEGKAMTTSYDSHRRESIVIATATGETQLPT 60

Query: 66 DKITSFSH----PEIGTVVVSE 83
          + + S +     P    +  ++
Sbjct: 61 EALVSMTALIENPHFKDIKFTQ 82


>UniRef50_B9ZK57 Transcriptional antiterminator, Rof n=1 Tax=Thioalkalivibrio sp.
          K90mix RepID=B9ZK57_9GAMM
          Length = 82

 Score = 78.8 bits (193), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 4/72 (5%)

Query: 5  YQPINCDDYDNLELACQHHLMLTLELKDGEKLQ---AKASDLVSRKNVEYLVVE-AAGET 60
          Y PI C+ Y  LELA      L    + GE  +    +  DL +R+  EYL++  A G  
Sbjct: 7  YTPIACERYSELELAILRGQHLRTHWRRGEMDRIAVVRPLDLRTRRGAEYLILRDAEGRR 66

Query: 61 RELRLDKITSFS 72
          +  RLD++ SF 
Sbjct: 67 QWWRLDRLVSFE 78


>UniRef50_UPI0001AEC500 hypothetical protein AmacA2_18706 n=1 Tax=Alteromonas macleodii
          ATCC 27126 RepID=UPI0001AEC500
          Length = 84

 Score = 78.0 bits (191), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 8/82 (9%)

Query: 8  INCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKN----VEYLVVEAAGETREL 63
          I C  YD +E+AC + L +++ LKDG  ++  A   V  K      E + +     T+ +
Sbjct: 3  IACQLYDYIEIACMYGLEVSVVLKDGNTVKGTALTTVIDKRNDVATECIQMSIDKTTQNI 62

Query: 64 RLDKITSFSH----PEIGTVVV 81
           L++I         P   +V  
Sbjct: 63 ALNEIAQLDAITDNPHFSSVSF 84


>UniRef50_Q0AJD0 Transcriptional antiterminator, Rof n=2 Tax=Nitrosomonas
          RepID=Q0AJD0_NITEC
          Length = 89

 Score = 77.6 bits (190), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 5/84 (5%)

Query: 6  QPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVS-RKNVEYLVVEAA---GETR 61
          Q I+CD +D +E+AC +   + L LKD    + KA D+++  +  E+L++E      +  
Sbjct: 3  QHISCDLHDYIEVACMYGYQVRLILKDQSTAEGKAKDILTDTETREFLLLETEIGSQQVE 62

Query: 62 ELRLDKITSFS-HPEIGTVVVSES 84
           + LDK+   +       VV S S
Sbjct: 63 LIFLDKLQVLTPDARFTEVVFSGS 86


>UniRef50_C6MBY6 Transcriptional antiterminator, Rof n=1 Tax=Nitrosomonas sp.
          AL212 RepID=C6MBY6_9PROT
          Length = 84

 Score = 74.9 bits (183), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 40/79 (50%), Gaps = 6/79 (7%)

Query: 8  INCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSR-KNVEYLVVEAAGETRELRLD 66
          I+C+ +D +E+AC +   L L LK+   ++  A D+V+  +  E LV++     + + L 
Sbjct: 6  ISCEQHDFVEVACMYRYRLRLVLKNRLIIEGIAIDIVNSPEKQECLVIDNDSRVQ-IELT 64

Query: 67 KITSFS----HPEIGTVVV 81
          ++ S      + +   V+ 
Sbjct: 65 QLVSMEVLTPNAKFREVIF 83


>UniRef50_C9PFC4 Transcriptional antiterminator n=1 Tax=Vibrio furnissii CIP
          102972 RepID=C9PFC4_VIBFU
          Length = 83

 Score = 74.5 bits (182), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 36/82 (43%), Gaps = 5/82 (6%)

Query: 7  PINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDL-VSRKNVEYLVVEAAGETRELRL 65
           I+C  YD +ELAC +   + + L +G+ +Q  A     + +  E LV++ A   R +  
Sbjct: 1  MISCSQYDAIELACVYQFPVAVTLLNGDVVQGIAKGTGYNAERQECLVLQQAECERWVET 60

Query: 66 DKI----TSFSHPEIGTVVVSE 83
            +        +P +  +   +
Sbjct: 61 ATLRRMQVLIENPHLSDIHFQQ 82


>UniRef50_A4BCS7 Putative uncharacterized protein n=1 Tax=Reinekea blandensis
          MED297 RepID=A4BCS7_9GAMM
          Length = 93

 Score = 74.2 bits (181), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 35/73 (47%)

Query: 8  INCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVEYLVVEAAGETRELRLDK 67
          + CD  D+ E  C   L + + L +G +L   A  L   + +E L +++      + L++
Sbjct: 6  LRCDLQDHFEHVCVLQLPVRVRLTNGTRLAGTADTLRVVQGLESLQLQSQRGIELVPLNE 65

Query: 68 ITSFSHPEIGTVV 80
          I + S+P+ G   
Sbjct: 66 IATLSYPQAGQTR 78


>UniRef50_B0TMP4 Transcriptional antiterminator, Rof n=9 Tax=Gammaproteobacteria
          RepID=B0TMP4_SHEHH
          Length = 100

 Score = 72.2 bits (176), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 36/99 (36%), Gaps = 24/99 (24%)

Query: 7  PINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDL-VSRKNVEYLVV----------- 54
           I+C+ YD +E+ C +   + L+LK GE +   A D     K  E + +           
Sbjct: 1  MISCNQYDYIEIVCLYRYPIALKLKSGETISGIALDTARDSKKRECIKLTYQDSPNTDAD 60

Query: 55 --------EAAGETRELRLDKITS----FSHPEIGTVVV 81
                       T+ + LD I S      +P   +V  
Sbjct: 61 DSEDDGVNNDLAVTQLIILDDIASIHVCIDNPHFQSVEF 99


>UniRef50_Q0A5U7 Transcriptional antiterminator, Rof n=1 Tax=Alkalilimnicola
          ehrlichii MLHE-1 RepID=Q0A5U7_ALHEH
          Length = 83

 Score = 71.5 bits (174), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 4/75 (5%)

Query: 2  NDTYQPINCDDYDNLELACQHHLMLTLELKD---GEKLQAKASDLVSRKNVEYLVVEA-A 57
          ND Y+PI+C+ Y  LEL   H   L +  +             DL +R   EYLV     
Sbjct: 7  NDDYRPISCERYAELELHIMHARRLRVAWRTPQGQHIDTLIPEDLHTRDGAEYLVARNRL 66

Query: 58 GETRELRLDKITSFS 72
          GE   +RLD++  F 
Sbjct: 67 GEAFIIRLDQLQRFR 81


>UniRef50_A4CFB2 Putative uncharacterized protein n=1 Tax=Pseudoalteromonas
          tunicata D2 RepID=A4CFB2_9GAMM
          Length = 82

 Score = 71.5 bits (174), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 8  INCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRK----NVEYLVVEAAGETREL 63
          ++C D+D +E+AC +   L + L + ++ +  A     R+      E L+++ +    E+
Sbjct: 1  MDCADHDFIEVACLYQYRLKISLCNNQQKEGIALTTQVRQQGVLKAELLIIQTSAGNEEI 60

Query: 64 RLDKITSFSH 73
           LD+I     
Sbjct: 61 VLDEIKQIEA 70


>UniRef50_B8GPB7 Transcriptional antiterminator, Rof n=1 Tax=Thioalkalivibrio sp.
          HL-EbGR7 RepID=B8GPB7_THISH
          Length = 82

 Score = 71.5 bits (174), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 5/74 (6%)

Query: 1  MNDTYQPINCDDYDNLELACQHHLMLTLELKD----GEKLQAKASDLVSRKNVEYLVVEA 56
          M   Y PI+C+ Y   ELA      L +  KD          + +DL +R++ E+++   
Sbjct: 1  MTSDYTPISCELYSEYELAIMRGRTLKVRWKDRYGMDRVETLRPTDLRTRRHAEFMIARN 60

Query: 57 A-GETRELRLDKIT 69
            G+ R LRLD+I 
Sbjct: 61 QLGQRRVLRLDRIV 74


>UniRef50_Q47UI2 Putative uncharacterized protein n=1 Tax=Colwellia
          psychrerythraea 34H RepID=Q47UI2_COLP3
          Length = 84

 Score = 70.7 bits (172), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 32/66 (48%)

Query: 8  INCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVEYLVVEAAGETRELRLDK 67
          I+CD +D  E+ C    ++ +  KD +     A+D+   +  EYL +    +T +L L +
Sbjct: 5  ISCDAHDYFEIVCMRRSLIKVTSKDNKIYHGIATDIKLVEKQEYLQISDDIKTEQLLLSE 64

Query: 68 ITSFSH 73
          + +   
Sbjct: 65 VKTLEA 70


>UniRef50_Q2BPA6 Putative uncharacterized protein n=1 Tax=Neptuniibacter
          caesariensis RepID=Q2BPA6_9GAMM
          Length = 80

 Score = 70.7 bits (172), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 4/72 (5%)

Query: 3  DTYQPINCDDYDNLELACQHHLMLTLELKDG---EKLQAKASDLVSRKNVEYLVVEAAG- 58
            Y PINC+ +D  ELAC    +  +E  D       + +  DL   K  E+L+ E    
Sbjct: 5  QQYTPINCEIHDGYELACMRKAIHNVEWIDQGKTHSEKLRFLDLEYSKKGEFLIAENEQK 64

Query: 59 ETRELRLDKITS 70
          E R++RLD I S
Sbjct: 65 EPRKIRLDSIFS 76


>UniRef50_A4STJ9 Modulator of Rho-dependent transcription termination n=1
          Tax=Aeromonas salmonicida subsp. salmonicida A449
          RepID=A4STJ9_AERS4
          Length = 84

 Score = 70.3 bits (171), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 32/56 (57%)

Query: 4  TYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVEYLVVEAAGE 59
           YQPI+CD YD LE+A    L +TL  +DG +   K   + + + VEYL++ +   
Sbjct: 3  DYQPISCDLYDWLEIAASWQLPVTLASRDGHQWDDKIRTIEASEGVEYLLLHSGER 58


>UniRef50_Q3SIL6 Transcriptional antiterminator, Rof n=1 Tax=Thiobacillus
          denitrificans ATCC 25259 RepID=Q3SIL6_THIDA
          Length = 75

 Score = 68.8 bits (167), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 3/76 (3%)

Query: 1  MNDT-YQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVEYLVVEAAGE 59
          M++T Y PI C  ++ LE A      L ++  DG+K + +  D+ +R+  E+L  E  G 
Sbjct: 1  MSETPYAPIPCAQHERLEFAALTGQWLEVK-IDGQKQRLRPLDVYTREGAEWLRAETDGG 59

Query: 60 T-RELRLDKITSFSHP 74
              LRLD++      
Sbjct: 60 EALTLRLDRLVLAEDA 75


>UniRef50_A8H694 Transcriptional antiterminator, Rof n=1 Tax=Shewanella pealeana
          ATCC 700345 RepID=A8H694_SHEPA
          Length = 102

 Score = 68.0 bits (165), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 36/99 (36%), Gaps = 26/99 (26%)

Query: 7  PINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDL-VSRKNVEYL------------- 52
           ++C  +D +EL C  +  + L +K+G+ +  KA D   + +    +             
Sbjct: 1  MLSCSQHDYIELVCIFNYPIKLTMKNGDSISGKALDTCRNTQKQHCIKLVCKQQNCIKGS 60

Query: 53 --------VVEAAGETRELRLDKITSFS----HPEIGTV 79
                   +    E R + LD I S      +P +  +
Sbjct: 61 HSQSSPETQLSDEAEHRLIVLDDIASMQVCVDNPHLDRI 99


>UniRef50_B8K818 Putative uncharacterized protein n=1 Tax=Vibrio parahaemolyticus
          16 RepID=B8K818_VIBPA
          Length = 74

 Score = 56.0 bits (134), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 5/66 (7%)

Query: 21 QHHLMLTLELKDGEKLQAKASDLVSRK-NVEYLVVEAAGETRELRLDKITSFS----HPE 75
               + L LK G+K+Q  A D V      E +++E       + LD I        +P 
Sbjct: 1  MFRYPVVLTLKSGDKVQGTAIDTVRNDNKEECVLLETLNGASYVLLDSIVQLEVSVDNPH 60

Query: 76 IGTVVV 81
              V 
Sbjct: 61 FKKKVF 66


>UniRef50_Q081B6 Transcriptional antiterminator, Rof n=1 Tax=Shewanella
          frigidimarina NCIMB 400 RepID=Q081B6_SHEFN
          Length = 88

 Score = 53.4 bits (127), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 37/86 (43%), Gaps = 9/86 (10%)

Query: 7  PINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDL----VSRKNVEYLV-VEAAGETR 61
          PI C+ YD +E+ C +   + L L DG  +Q +   +     +++  E +  +    +  
Sbjct: 3  PIKCEIYDYIEIICLYRYRVKLTLTDGTHIQGQFDRILYVNRNQQKHEAIAGINQQQQAI 62

Query: 62 ELRLDKITSF----SHPEIGTVVVSE 83
          E+ L  ITS      +     + + E
Sbjct: 63 EVILTYITSIDVLSQNASFSHISLIE 88


>UniRef50_C6NSC5 Transcriptional antiterminator, Rof n=1 Tax=Acidithiobacillus
          caldus ATCC 51756 RepID=C6NSC5_9GAMM
          Length = 75

 Score = 51.4 bits (122), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 31/60 (51%)

Query: 5  YQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVEYLVVEAAGETRELR 64
          Y PI C  +  LELA      + L+L+DG +L+   +D+ + K  EYL + +     ++ 
Sbjct: 7  YIPIGCALHSELELAAIQRRRVRLQLRDGRELRGIIADVWTEKGREYLRLRSEDGKEQVV 66


>UniRef50_A1ZYH1 Putative uncharacterized protein n=1 Tax=Microscilla marina ATCC
          23134 RepID=A1ZYH1_9SPHI
          Length = 84

 Score = 50.3 bits (119), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 7/76 (9%)

Query: 5  YQPINCDDYDNLELACQHHLMLTLELKDGEKLQA----KASDLVSRKNVEYLVVEAAGET 60
          Y PINC  YD LE          +   D +  +A       DL  +  VEY+        
Sbjct: 7  YNPINCSLYDYLEAWAVTQTPCKVTYLDAQNKEAYFTKTIVDLYIKDKVEYVKWNDGS-- 64

Query: 61 RELRLDKITSFSHPEI 76
            LRLD++   +    
Sbjct: 65 -SLRLDQLIEINGVRF 79


>UniRef50_D1KE28 Putative uncharacterized protein n=1 Tax=uncultured SUP05 cluster
          bacterium RepID=D1KE28_9GAMM
          Length = 71

 Score = 49.5 bits (117), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 2/67 (2%)

Query: 3  DTYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVEYLV-VEAAGETR 61
            YQ I+C+ +   ELA   +  + +   +G+    +  D+VS+   E+L+ ++     +
Sbjct: 2  SDYQRISCEAHSVYELAIMRNQSIEVT-INGKPQTIQPQDIVSKSGEEFLIFLDKEDTRK 60

Query: 62 ELRLDKI 68
          ELR D+I
Sbjct: 61 ELRADQI 67


>UniRef50_A6F9S9 Putative uncharacterized protein n=1 Tax=Moritella sp. PE36
          RepID=A6F9S9_9GAMM
          Length = 67

 Score = 47.6 bits (112), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 5/66 (7%)

Query: 21 QHHLMLTLELKDGEKLQAKASDLVSRKNV-EYLVVEAAGETRELRLDKITSFS----HPE 75
           H   + L LK G ++  K  D     N  E + +   G T  + LD I +      +P 
Sbjct: 1  MHQYPIKLMLKSGVEIVGKGLDTKRNDNRDECIQMMVDGVTSLVVLDTILTLEVTVDNPH 60

Query: 76 IGTVVV 81
             V  
Sbjct: 61 FKLVTF 66


>UniRef50_Q12MD8 Transcriptional antiterminator, Rof n=1 Tax=Shewanella
           denitrificans OS217 RepID=Q12MD8_SHEDO
          Length = 106

 Score = 45.3 bits (106), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 33/85 (38%), Gaps = 9/85 (10%)

Query: 6   QPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRK----NVEYLV-VEAAGET 60
           + I C DYD +E+ C H   +T+ +KD  + + +       +      E +V  +     
Sbjct: 21  RHIRCADYDYIEIMCLHRYRVTVMMKDLTQYEGQFHTTSIIEFEGIKREAIVGFDINQAP 80

Query: 61  RELRLDKITSFS----HPEIGTVVV 81
            +L  + I S S      +   +  
Sbjct: 81  IQLMFEDILSISVHDDKAQFSRLQF 105


>UniRef50_B9TIC6 Putative uncharacterized protein n=1 Tax=Ricinus communis
          RepID=B9TIC6_RICCO
          Length = 78

 Score = 44.5 bits (104), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 7/80 (8%)

Query: 1  MNDTYQPINCDDYDN-LELACQHH-LMLTLELKDGEK--LQAKASDLVSRKNVEYLVVEA 56
          M+  Y PI+C+ +D  L LA       LT+   DG    L     D+ +   VEYL +  
Sbjct: 1  MDQPYIPIDCERHDELLALATLRRPCTLTVARPDGTLDNLAGVIEDVYADTGVEYLRLRG 60

Query: 57 AGETRELRLDKITSFSHPEI 76
                +RLD I + +    
Sbjct: 61 GP---TVRLDWIRALNGRPF 77


>UniRef50_Q0KB30 Putative uncharacterized protein h16_A1662 n=1 Tax=Ralstonia
          eutropha H16 RepID=Q0KB30_RALEH
          Length = 83

 Score = 43.7 bits (102), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 7/74 (9%)

Query: 4  TYQPINCDDYDNLELACQHHLMLTLELKDG----EKLQAKASDLVSRKNVEYLVVEAAGE 59
           Y PI+C+ +D LE          +  +D     ++     +D+ S    EYL ++    
Sbjct: 7  QYSPISCEFHDRLEDLATVRRPTQIHYRDADGLLQQRTETITDVYSLGGAEYLTLKTGE- 65

Query: 60 TRELRLDKITSFSH 73
             LRLD++     
Sbjct: 66 --TLRLDQLLEVDG 77


>UniRef50_C7PBT9 Putative uncharacterized protein n=1 Tax=Chitinophaga pinensis
          DSM 2588 RepID=C7PBT9_CHIPD
          Length = 84

 Score = 42.2 bits (98), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 7/76 (9%)

Query: 2  NDTYQPINCDDYDNLELACQHHLMLTLELKDGE----KLQAKASDLVSRKNVEYLVVEAA 57
          N+ YQPI+C+ YD LE       +  +  +D E     + A+  D+ +   VEY+ ++  
Sbjct: 5  NNPYQPIDCNYYDRLEAWATMRTICQIIFRDEEGKEQDVTARIEDVYALNKVEYMRMDNG 64

Query: 58 GETRELRLDKITSFSH 73
               +RLD + S ++
Sbjct: 65 ---LVIRLDSLLSVNN 77


>UniRef50_Q3JEK1 Putative uncharacterized protein n=2 Tax=Nitrosococcus oceani
          RepID=Q3JEK1_NITOC
          Length = 85

 Score = 41.0 bits (95), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 7/84 (8%)

Query: 4  TYQPINCDDYDNLE-LACQHHL-MLTLELKDGEKLQA--KASDLVSRKNVEYLVVEAAGE 59
           Y PINC+ +D LE LA       +  +  DG+ ++     +D+ ++   E+ V+ +   
Sbjct: 3  DYIPINCNFHDQLEALATLRKQCHIFYQTMDGKIIETLDTITDIYTKNQEEFTVLGSGE- 61

Query: 60 TRELRLDKITSFSHPEIGTVVVSE 83
             +RLD++          +  S 
Sbjct: 62 --IIRLDRLLEVDGQSYLEMKTSG 83


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_P0AFW8 Protein rof n=144 Tax=Enterobacteriaceae RepID=R...   106   3e-22
UniRef50_D0KJR0 Transcriptional antiterminator, Rof n=14 Tax=Ent...   100   1e-20
UniRef50_D0FPX3 Rho-binding antiterminator protein n=2 Tax=Erwin...    96   4e-19
UniRef50_Q8D5E4 Transcriptional antiterminator n=2 Tax=Vibrio vu...    93   4e-18
UniRef50_A9L641 Transcriptional antiterminator, Rof n=8 Tax=Gamm...    91   1e-17
UniRef50_C1M505 Transcriptional antiterminator n=1 Tax=Citrobact...    91   1e-17
UniRef50_C3NZ10 Transcriptional antiterminator n=31 Tax=Vibrio R...    91   1e-17
UniRef50_Q3KB29 Modulator of Rho-dependent transcription termina...    88   1e-16
UniRef50_A7JY17 Transcriptional antiterminator n=8 Tax=Vibrio Re...    88   1e-16
UniRef50_Q1N2D2 Putative uncharacterized protein n=1 Tax=Bermane...    87   2e-16
UniRef50_Q15V95 Transcriptional antiterminator, Rof n=1 Tax=Pseu...    87   2e-16
UniRef50_A3Y5G8 Putative uncharacterized protein n=1 Tax=Marinom...    86   3e-16
UniRef50_Q2C9D0 Transcriptional antiterminator n=2 Tax=Photobact...    86   3e-16
UniRef50_B5EMC6 Transcriptional antiterminator, Rof n=2 Tax=Acid...    85   7e-16
UniRef50_C9NTU8 Transcriptional antiterminator n=1 Tax=Vibrio co...    85   8e-16
UniRef50_B3PH51 Modulator of Rho-dependent transcription termina...    83   2e-15
UniRef50_A0Y0U5 Putative uncharacterized protein n=1 Tax=Alterom...    83   4e-15
UniRef50_C9PFC4 Transcriptional antiterminator n=1 Tax=Vibrio fu...    82   5e-15
UniRef50_UPI0001AEC500 hypothetical protein AmacA2_18706 n=1 Tax...    81   1e-14
UniRef50_A3Q9J2 Transcriptional antiterminator, Rof n=7 Tax=Shew...    80   2e-14
UniRef50_B0TMP4 Transcriptional antiterminator, Rof n=9 Tax=Gamm...    79   5e-14
UniRef50_B1KQ80 Transcriptional antiterminator, Rof n=1 Tax=Shew...    79   6e-14
UniRef50_Q0AJD0 Transcriptional antiterminator, Rof n=2 Tax=Nitr...    78   1e-13
UniRef50_B9ZK57 Transcriptional antiterminator, Rof n=1 Tax=Thio...    78   1e-13
UniRef50_C6MBY6 Transcriptional antiterminator, Rof n=1 Tax=Nitr...    77   1e-13
UniRef50_A8H694 Transcriptional antiterminator, Rof n=1 Tax=Shew...    75   7e-13
UniRef50_A1ZYH1 Putative uncharacterized protein n=1 Tax=Microsc...    72   5e-12
UniRef50_A4CFB2 Putative uncharacterized protein n=1 Tax=Pseudoa...    72   5e-12
UniRef50_Q47UI2 Putative uncharacterized protein n=1 Tax=Colwell...    72   6e-12
UniRef50_A4STJ9 Modulator of Rho-dependent transcription termina...    71   9e-12
UniRef50_B8GPB7 Transcriptional antiterminator, Rof n=1 Tax=Thio...    70   2e-11
UniRef50_A4BCS7 Putative uncharacterized protein n=1 Tax=Reineke...    70   3e-11
UniRef50_Q3SIL6 Transcriptional antiterminator, Rof n=1 Tax=Thio...    69   6e-11
UniRef50_Q2BPA6 Putative uncharacterized protein n=1 Tax=Neptuni...    68   1e-10
UniRef50_Q0A5U7 Transcriptional antiterminator, Rof n=1 Tax=Alka...    67   2e-10
UniRef50_B9TIC6 Putative uncharacterized protein n=1 Tax=Ricinus...    67   2e-10
UniRef50_B8K818 Putative uncharacterized protein n=1 Tax=Vibrio ...    65   6e-10
UniRef50_Q081B6 Transcriptional antiterminator, Rof n=1 Tax=Shew...    65   6e-10
UniRef50_Q12MD8 Transcriptional antiterminator, Rof n=1 Tax=Shew...    62   5e-09
UniRef50_A6F9S9 Putative uncharacterized protein n=1 Tax=Moritel...    61   1e-08
UniRef50_C6NSC5 Transcriptional antiterminator, Rof n=1 Tax=Acid...    60   2e-08
UniRef50_Q0KB30 Putative uncharacterized protein h16_A1662 n=1 T...    59   5e-08
UniRef50_D1KE28 Putative uncharacterized protein n=1 Tax=uncultu...    57   2e-07

Sequences not found previously or not previously below threshold:

UniRef50_C7PBT9 Putative uncharacterized protein n=1 Tax=Chitino...    54   2e-06
UniRef50_Q3JEK1 Putative uncharacterized protein n=2 Tax=Nitroso...    44   0.001
UniRef50_B0C103 Putative uncharacterized protein n=1 Tax=Acaryoc...    42   0.004

>UniRef50_P0AFW8 Protein rof n=144 Tax=Enterobacteriaceae RepID=ROF_ECOLI
          Length = 84

 Score =  106 bits (264), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 84/84 (100%), Positives = 84/84 (100%)

Query: 1  MNDTYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVEYLVVEAAGET 60
          MNDTYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVEYLVVEAAGET
Sbjct: 1  MNDTYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVEYLVVEAAGET 60

Query: 61 RELRLDKITSFSHPEIGTVVVSES 84
          RELRLDKITSFSHPEIGTVVVSES
Sbjct: 61 RELRLDKITSFSHPEIGTVVVSES 84


>UniRef50_D0KJR0 Transcriptional antiterminator, Rof n=14 Tax=Enterobacteriaceae
          RepID=D0KJR0_PECWW
          Length = 86

 Score =  100 bits (250), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 58/84 (69%), Positives = 70/84 (83%)

Query: 1  MNDTYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVEYLVVEAAGET 60
          M++ YQPINCDDYD+LE  CQ  L LTLEL++GE +  KASD++SRK +EYLV+EA+G T
Sbjct: 3  MSNEYQPINCDDYDSLEATCQQSLTLTLELRNGEVVTGKASDMISRKQIEYLVIEASGAT 62

Query: 61 RELRLDKITSFSHPEIGTVVVSES 84
          RELRLD I SFSHPEIG +VVSES
Sbjct: 63 RELRLDHIVSFSHPEIGKIVVSES 86


>UniRef50_D0FPX3 Rho-binding antiterminator protein n=2 Tax=Erwinia pyrifoliae
          RepID=D0FPX3_ERWPY
          Length = 87

 Score = 95.6 bits (237), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 54/82 (65%), Positives = 69/82 (84%)

Query: 2  NDTYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVEYLVVEAAGETR 61
          N+ Y+PINCDDYDNLELACQ+  +LTL LK+ E+L+A+A  ++SRKNVEYL ++ AG  R
Sbjct: 4  NEVYKPINCDDYDNLELACQNKWLLTLVLKNSEQLEARAEGILSRKNVEYLSIQVAGACR 63

Query: 62 ELRLDKITSFSHPEIGTVVVSE 83
          +LRLD I SFSHP++GTVVVSE
Sbjct: 64 DLRLDHILSFSHPQLGTVVVSE 85


>UniRef50_Q8D5E4 Transcriptional antiterminator n=2 Tax=Vibrio vulnificus
          RepID=Q8D5E4_VIBVU
          Length = 82

 Score = 92.5 bits (229), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 5/82 (6%)

Query: 7  PINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDL-VSRKNVEYLVVEAAGETRELRL 65
           I+C+ YD LE+AC + + + L LKDG ++     +   +    E L VE  G+   +  
Sbjct: 1  MISCNQYDYLEIACLYRIGVCLTLKDGSEISGVPVNTGFNEHKQECLEVETGGDALWVPT 60

Query: 66 DKITSF----SHPEIGTVVVSE 83
          D I +      +P    +   +
Sbjct: 61 DMILTMQALTENPHFTKIEFEQ 82


>UniRef50_A9L641 Transcriptional antiterminator, Rof n=8 Tax=Gammaproteobacteria
          RepID=A9L641_SHEB9
          Length = 90

 Score = 91.0 bits (225), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 5/85 (5%)

Query: 3  DTYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSR-KNVEYLVVEAAGETR 61
            Y+ I C+ YD LELAC     L +EL DG + Q +A    +R    E+LV++     +
Sbjct: 2  SDYKMIPCEHYDYLELACLRGYQLKIELIDGTQCQGQAITTQTRADKTEWLVIQQQQNKQ 61

Query: 62 ELRLDKITSFS----HPEIGTVVVS 82
           LRLD I + +    H E G + ++
Sbjct: 62 SLRLDHIVAITPVDVHAEFGRMQIA 86


>UniRef50_C1M505 Transcriptional antiterminator n=1 Tax=Citrobacter sp. 30_2
          RepID=C1M505_9ENTR
          Length = 95

 Score = 91.0 bits (225), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 5/88 (5%)

Query: 2  NDTYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDL-VSRKNVEYLVVEAAGET 60
           + Y PI+CD +D LE+AC +H  L +EL DG    AKA     + +  E+LVV  +   
Sbjct: 5  TEEYHPIDCDLHDYLEIACMYHYWLRIELTDGTCFDAKALTTCTTVEKEEFLVVGQSENQ 64

Query: 61 RELRLDKITSFSH----PEIGTVVVSES 84
          +++RLD +++ +         TV    +
Sbjct: 65 QKIRLDYLSAITALTPGATFSTVSFQRA 92


>UniRef50_C3NZ10 Transcriptional antiterminator n=31 Tax=Vibrio RepID=C3NZ10_VIBCJ
          Length = 81

 Score = 90.6 bits (224), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 5/80 (6%)

Query: 7  PINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDL-VSRKNVEYLVVEAAGETRELRL 65
           ++C  YD +ELAC  HL + L +K GE     A+D   + +  E + +    ET  L  
Sbjct: 1  MVSCSQYDYIELACLFHLPVKLTMKSGEVYYGVAADTQRNSQKQECIALRGEEETWLLET 60

Query: 66 DKITSFSH----PEIGTVVV 81
          D+++S       P    +  
Sbjct: 61 DQLSSMEALSEQPHFSVIHF 80


>UniRef50_Q3KB29 Modulator of Rho-dependent transcription termination n=8
          Tax=Gammaproteobacteria RepID=Q3KB29_PSEPF
          Length = 92

 Score = 87.5 bits (216), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/85 (38%), Positives = 51/85 (60%), Gaps = 5/85 (5%)

Query: 5  YQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVS-RKNVEYLVVEAAGETREL 63
          YQP+NCD YD LE+AC     L +EL DG++L AKA    +     E+LV+E     +E+
Sbjct: 4  YQPLNCDLYDYLEIACLRGYQLDIELIDGQRLMAKAVTTRTSSDKEEFLVIEQQAAQQEI 63

Query: 64 RLDKITSF----SHPEIGTVVVSES 84
          RLD++ +     ++ E G V+++E 
Sbjct: 64 RLDQLLAITPQETNAEFGRVILAEG 88


>UniRef50_A7JY17 Transcriptional antiterminator n=8 Tax=Vibrio RepID=A7JY17_VIBSE
          Length = 81

 Score = 87.5 bits (216), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 5/81 (6%)

Query: 7  PINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDL-VSRKNVEYLVVEAAGETRELRL 65
           + C  YD +E+AC   L + + LK+GE  Q  A D     +  E L ++  GE      
Sbjct: 1  MVTCSQYDFIEIACMFKLPIEITLKNGETHQGNAFDTGYDMQRQECLFLDMDGEHTAFPT 60

Query: 66 DKITSFS----HPEIGTVVVS 82
          +++ +      +P    V   
Sbjct: 61 EQLVAMRALKANPHFDEVTFE 81


>UniRef50_Q1N2D2 Putative uncharacterized protein n=1 Tax=Bermanella marisrubri
          RepID=Q1N2D2_9GAMM
          Length = 81

 Score = 86.8 bits (214), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 14/81 (17%), Positives = 36/81 (44%), Gaps = 5/81 (6%)

Query: 7  PINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDL-VSRKNVEYLVVEAAGETRELRL 65
           + C  +D +E+AC + + + LEL+ GE ++  A D    ++    +++      + + +
Sbjct: 1  MVTCAQHDYIEIACLYQISVCLELEHGEFVKGIALDTAYDQQKRHCILINTDEGDQWIPI 60

Query: 66 DKITSF----SHPEIGTVVVS 82
          D + +      +P    +   
Sbjct: 61 DSLCAMHAMSKNPHFSEIYFQ 81


>UniRef50_Q15V95 Transcriptional antiterminator, Rof n=1 Tax=Pseudoalteromonas
          atlantica T6c RepID=Q15V95_PSEA6
          Length = 90

 Score = 86.8 bits (214), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 41/82 (50%), Gaps = 5/82 (6%)

Query: 8  INCDDYDNLELACQHHLMLTLELKDGEKLQAKASDL-VSRKNVEYLVVEAAGETRELRLD 66
          + C + D +ELAC  ++ + L L+DG +++  A D   +++  E +V+ +A     + L+
Sbjct: 1  MKCAEQDYIELACLFNMPILLRLRDGSEIKGTAKDTSYNKQKQECIVLHSAEGECSIALN 60

Query: 67 KITSFS----HPEIGTVVVSES 84
           I        +P    +  S+S
Sbjct: 61 LIALMQAQHANPHFSEIRFSKS 82


>UniRef50_A3Y5G8 Putative uncharacterized protein n=1 Tax=Marinomonas sp. MED121
          RepID=A3Y5G8_9GAMM
          Length = 83

 Score = 86.4 bits (213), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 39/80 (48%), Gaps = 5/80 (6%)

Query: 7  PINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDL-VSRKNVEYLVVEAAGETRELRL 65
           + C+ +D +ELAC +   + L L++G++++ +A D   +      L ++   E + + L
Sbjct: 3  MMTCEQHDYIELACVYLYEINLTLRNGDQVKGQALDTLYNDDKEACLCIKQGEEVKLVVL 62

Query: 66 DKITSF----SHPEIGTVVV 81
          D+I        +P    ++ 
Sbjct: 63 DQIVGMRACQENPHFHHILF 82


>UniRef50_Q2C9D0 Transcriptional antiterminator n=2 Tax=Photobacterium
          RepID=Q2C9D0_9GAMM
          Length = 80

 Score = 86.4 bits (213), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 5/80 (6%)

Query: 7  PINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDL-VSRKNVEYLVVEAAGETRELRL 65
           I+C  +D +E+AC  HL ++L  ++GE++   A D   +    E + ++       + L
Sbjct: 1  MISCHQHDYIEIACMLHLDVSLTYRNGERISGIAQDTCYNAHREECIELKINNTVSRIVL 60

Query: 66 DKITSFS----HPEIGTVVV 81
          D + S      +P   TV  
Sbjct: 61 DHLASMQALTANPHFETVNF 80


>UniRef50_B5EMC6 Transcriptional antiterminator, Rof n=2 Tax=Acidithiobacillus
          ferrooxidans RepID=B5EMC6_ACIF5
          Length = 77

 Score = 84.8 bits (209), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 30/72 (41%)

Query: 1  MNDTYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVEYLVVEAAGET 60
          M+  Y+PI+C+ +  LELA        L + DG        D+ + +  E+L +      
Sbjct: 1  MHSAYKPISCELHSALELAAMRRRPARLHMTDGSWQDGIILDVWTEQGREWLCLRRLDGD 60

Query: 61 RELRLDKITSFS 72
           E+ L  I    
Sbjct: 61 VEIDLTHIQQVQ 72


>UniRef50_C9NTU8 Transcriptional antiterminator n=1 Tax=Vibrio coralliilyticus
          ATCC BAA-450 RepID=C9NTU8_9VIBR
          Length = 84

 Score = 84.8 bits (209), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 38/82 (46%), Gaps = 5/82 (6%)

Query: 7  PINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDL-VSRKNVEYLVVEAAGETRELRL 65
           I+C+ YD +E+AC +H+ + L  + G+ ++ KA          E +V+  A    +L  
Sbjct: 1  MISCNQYDYIEIACLYHIPVRLVTESGQIVEGKAMTTSYDSHRRESIVIATATGETQLPT 60

Query: 66 DKITSF----SHPEIGTVVVSE 83
          + + S      +P    +  ++
Sbjct: 61 EALVSMTALIENPHFKDIKFTQ 82


>UniRef50_B3PH51 Modulator of Rho-dependent transcription termination (ROF)
          superfamily n=1 Tax=Cellvibrio japonicus Ueda107
          RepID=B3PH51_CELJU
          Length = 81

 Score = 83.3 bits (205), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 35/80 (43%), Gaps = 5/80 (6%)

Query: 7  PINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDL-VSRKNVEYLVVEAAGETRELRL 65
           I+CD +D +E+ C +H  + L L  G  ++  A D   + +  E + +      + + L
Sbjct: 1  MIHCDQHDYIEIVCLYHYPIRLTLTSGATIEGIAQDTQHNDQREECIKLSTDTGEQLVVL 60

Query: 66 DKITSF----SHPEIGTVVV 81
           ++        +P +  VV 
Sbjct: 61 SELKQLDVLVENPHVERVVF 80


>UniRef50_A0Y0U5 Putative uncharacterized protein n=1 Tax=Alteromonadales
          bacterium TW-7 RepID=A0Y0U5_9GAMM
          Length = 83

 Score = 82.5 bits (203), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 5/80 (6%)

Query: 7  PINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDL-VSRKNVEYLVVEAAGETRELRL 65
           I+C+ YD +E+AC HHL + L LK+G+ +   A+D+  +    E + +  +GE + + L
Sbjct: 1  MISCNHYDYIEIACMHHLSIELILKNGDVVCGVAADIKRNALKQECIAINVSGELKLIVL 60

Query: 66 DKITSF----SHPEIGTVVV 81
          + I+      S+P    V  
Sbjct: 61 NTISVLKARESNPYFENVNF 80


>UniRef50_C9PFC4 Transcriptional antiterminator n=1 Tax=Vibrio furnissii CIP
          102972 RepID=C9PFC4_VIBFU
          Length = 83

 Score = 82.1 bits (202), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 36/82 (43%), Gaps = 5/82 (6%)

Query: 7  PINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDL-VSRKNVEYLVVEAAGETRELRL 65
           I+C  YD +ELAC +   + + L +G+ +Q  A     + +  E LV++ A   R +  
Sbjct: 1  MISCSQYDAIELACVYQFPVAVTLLNGDVVQGIAKGTGYNAERQECLVLQQAECERWVET 60

Query: 66 DKI----TSFSHPEIGTVVVSE 83
            +        +P +  +   +
Sbjct: 61 ATLRRMQVLIENPHLSDIHFQQ 82


>UniRef50_UPI0001AEC500 hypothetical protein AmacA2_18706 n=1 Tax=Alteromonas macleodii
          ATCC 27126 RepID=UPI0001AEC500
          Length = 84

 Score = 80.6 bits (198), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 8/82 (9%)

Query: 8  INCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKN----VEYLVVEAAGETREL 63
          I C  YD +E+AC + L +++ LKDG  ++  A   V  K      E + +     T+ +
Sbjct: 3  IACQLYDYIEIACMYGLEVSVVLKDGNTVKGTALTTVIDKRNDVATECIQMSIDKTTQNI 62

Query: 64 RLDKITSF----SHPEIGTVVV 81
           L++I        +P   +V  
Sbjct: 63 ALNEIAQLDAITDNPHFSSVSF 84


>UniRef50_A3Q9J2 Transcriptional antiterminator, Rof n=7 Tax=Shewanella
          RepID=A3Q9J2_SHELP
          Length = 93

 Score = 80.2 bits (197), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 4/84 (4%)

Query: 3  DTYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVEYLVVEAAGETRE 62
            Y+ I+C  +D+LELAC     L +E   GE      +        EYL V      + 
Sbjct: 2  QPYRIIDCHVHDHLELACIRGYQLLIETSTGEMRATAITLTTQADKSEYLTVRNEAGEQA 61

Query: 63 LRLDKITSF----SHPEIGTVVVS 82
          +RLD I +            VV++
Sbjct: 62 IRLDHIQAITPLTQGAAFDRVVIA 85


>UniRef50_B0TMP4 Transcriptional antiterminator, Rof n=9 Tax=Gammaproteobacteria
          RepID=B0TMP4_SHEHH
          Length = 100

 Score = 78.7 bits (193), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 36/99 (36%), Gaps = 24/99 (24%)

Query: 7  PINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDL-VSRKNVEYLVV----------- 54
           I+C+ YD +E+ C +   + L+LK GE +   A D     K  E + +           
Sbjct: 1  MISCNQYDYIEIVCLYRYPIALKLKSGETISGIALDTARDSKKRECIKLTYQDSPNTDAD 60

Query: 55 --------EAAGETRELRLDKITS----FSHPEIGTVVV 81
                       T+ + LD I S      +P   +V  
Sbjct: 61 DSEDDGVNNDLAVTQLIILDDIASIHVCIDNPHFQSVEF 99


>UniRef50_B1KQ80 Transcriptional antiterminator, Rof n=1 Tax=Shewanella woodyi
          ATCC 51908 RepID=B1KQ80_SHEWM
          Length = 81

 Score = 78.7 bits (193), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 5/78 (6%)

Query: 7  PINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSR-KNVEYLVVEAAGETRELRL 65
           I CD YD +E+AC + + + L L  GE+++  A          E+LV++   ET  + L
Sbjct: 1  MIKCDIYDYIEVACLYKIEVLLTLHSGEEVKGVADTTSINGDKQEFLVIKQGTETLNIEL 60

Query: 66 DKITSFS----HPEIGTV 79
            I +      +P   ++
Sbjct: 61 VSIKNMKALTPNPHFSSL 78


>UniRef50_Q0AJD0 Transcriptional antiterminator, Rof n=2 Tax=Nitrosomonas
          RepID=Q0AJD0_NITEC
          Length = 89

 Score = 77.5 bits (190), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 5/84 (5%)

Query: 6  QPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSR-KNVEYLVVEAA---GETR 61
          Q I+CD +D +E+AC +   + L LKD    + KA D+++  +  E+L++E      +  
Sbjct: 3  QHISCDLHDYIEVACMYGYQVRLILKDQSTAEGKAKDILTDTETREFLLLETEIGSQQVE 62

Query: 62 ELRLDKITSFS-HPEIGTVVVSES 84
           + LDK+   +       VV S S
Sbjct: 63 LIFLDKLQVLTPDARFTEVVFSGS 86


>UniRef50_B9ZK57 Transcriptional antiterminator, Rof n=1 Tax=Thioalkalivibrio sp.
          K90mix RepID=B9ZK57_9GAMM
          Length = 82

 Score = 77.5 bits (190), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 4/73 (5%)

Query: 4  TYQPINCDDYDNLELACQHHLMLTLELKDGEKLQ---AKASDLVSRKNVEYLVVEA-AGE 59
           Y PI C+ Y  LELA      L    + GE  +    +  DL +R+  EYL++    G 
Sbjct: 6  PYTPIACERYSELELAILRGQHLRTHWRRGEMDRIAVVRPLDLRTRRGAEYLILRDAEGR 65

Query: 60 TRELRLDKITSFS 72
           +  RLD++ SF 
Sbjct: 66 RQWWRLDRLVSFE 78


>UniRef50_C6MBY6 Transcriptional antiterminator, Rof n=1 Tax=Nitrosomonas sp.
          AL212 RepID=C6MBY6_9PROT
          Length = 84

 Score = 77.1 bits (189), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 6/80 (7%)

Query: 8  INCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSR-KNVEYLVVEAAGETRELRLD 66
          I+C+ +D +E+AC +   L L LK+   ++  A D+V+  +  E LV++     + + L 
Sbjct: 6  ISCEQHDFVEVACMYRYRLRLVLKNRLIIEGIAIDIVNSPEKQECLVIDNDSRVQ-IELT 64

Query: 67 KITSFS----HPEIGTVVVS 82
          ++ S      + +   V+  
Sbjct: 65 QLVSMEVLTPNAKFREVIFE 84


>UniRef50_A8H694 Transcriptional antiterminator, Rof n=1 Tax=Shewanella pealeana
           ATCC 700345 RepID=A8H694_SHEPA
          Length = 102

 Score = 74.8 bits (183), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 37/101 (36%), Gaps = 26/101 (25%)

Query: 7   PINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDL-VSRKNVEYL------------- 52
            ++C  +D +EL C  +  + L +K+G+ +  KA D   + +    +             
Sbjct: 1   MLSCSQHDYIELVCIFNYPIKLTMKNGDSISGKALDTCRNTQKQHCIKLVCKQQNCIKGS 60

Query: 53  --------VVEAAGETRELRLDKITSFS----HPEIGTVVV 81
                    +    E R + LD I S      +P +  + +
Sbjct: 61  HSQSSPETQLSDEAEHRLIVLDDIASMQVCVDNPHLDRIEL 101


>UniRef50_A1ZYH1 Putative uncharacterized protein n=1 Tax=Microscilla marina ATCC
          23134 RepID=A1ZYH1_9SPHI
          Length = 84

 Score = 72.1 bits (176), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 28/77 (36%), Gaps = 7/77 (9%)

Query: 4  TYQPINCDDYDNLELACQHHLMLTLELKDGEKLQA----KASDLVSRKNVEYLVVEAAGE 59
           Y PINC  YD LE          +   D +  +A       DL  +  VEY+       
Sbjct: 6  PYNPINCSLYDYLEAWAVTQTPCKVTYLDAQNKEAYFTKTIVDLYIKDKVEYVKWNDG-- 63

Query: 60 TRELRLDKITSFSHPEI 76
             LRLD++   +    
Sbjct: 64 -SSLRLDQLIEINGVRF 79


>UniRef50_A4CFB2 Putative uncharacterized protein n=1 Tax=Pseudoalteromonas
          tunicata D2 RepID=A4CFB2_9GAMM
          Length = 82

 Score = 72.1 bits (176), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 36/82 (43%), Gaps = 8/82 (9%)

Query: 8  INCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRK----NVEYLVVEAAGETREL 63
          ++C D+D +E+AC +   L + L + ++ +  A     R+      E L+++ +    E+
Sbjct: 1  MDCADHDFIEVACLYQYRLKISLCNNQQKEGIALTTQVRQQGVLKAELLIIQTSAGNEEI 60

Query: 64 RLDKITSFS----HPEIGTVVV 81
           LD+I        +     +  
Sbjct: 61 VLDEIKQIEALTSNAYFSVLTF 82


>UniRef50_Q47UI2 Putative uncharacterized protein n=1 Tax=Colwellia
          psychrerythraea 34H RepID=Q47UI2_COLP3
          Length = 84

 Score = 71.7 bits (175), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 32/66 (48%)

Query: 8  INCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVEYLVVEAAGETRELRLDK 67
          I+CD +D  E+ C    ++ +  KD +     A+D+   +  EYL +    +T +L L +
Sbjct: 5  ISCDAHDYFEIVCMRRSLIKVTSKDNKIYHGIATDIKLVEKQEYLQISDDIKTEQLLLSE 64

Query: 68 ITSFSH 73
          + +   
Sbjct: 65 VKTLEA 70


>UniRef50_A4STJ9 Modulator of Rho-dependent transcription termination n=1
          Tax=Aeromonas salmonicida subsp. salmonicida A449
          RepID=A4STJ9_AERS4
          Length = 84

 Score = 71.4 bits (174), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 34/65 (52%)

Query: 4  TYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVEYLVVEAAGETREL 63
           YQPI+CD YD LE+A    L +TL  +DG +   K   + + + VEYL++ +       
Sbjct: 3  DYQPISCDLYDWLEIAASWQLPVTLASRDGHQWDDKIRTIEASEGVEYLLLHSGERLSLG 62

Query: 64 RLDKI 68
           L  +
Sbjct: 63 DLATL 67


>UniRef50_B8GPB7 Transcriptional antiterminator, Rof n=1 Tax=Thioalkalivibrio sp.
          HL-EbGR7 RepID=B8GPB7_THISH
          Length = 82

 Score = 70.2 bits (171), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 5/77 (6%)

Query: 1  MNDTYQPINCDDYDNLELACQHHLMLTLELKD----GEKLQAKASDLVSRKNVEYLVVEA 56
          M   Y PI+C+ Y   ELA      L +  KD          + +DL +R++ E+++   
Sbjct: 1  MTSDYTPISCELYSEYELAIMRGRTLKVRWKDRYGMDRVETLRPTDLRTRRHAEFMIARN 60

Query: 57 A-GETRELRLDKITSFS 72
            G+ R LRLD+I    
Sbjct: 61 QLGQRRVLRLDRIVETQ 77


>UniRef50_A4BCS7 Putative uncharacterized protein n=1 Tax=Reinekea blandensis
          MED297 RepID=A4BCS7_9GAMM
          Length = 93

 Score = 69.8 bits (170), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 35/73 (47%)

Query: 8  INCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVEYLVVEAAGETRELRLDK 67
          + CD  D+ E  C   L + + L +G +L   A  L   + +E L +++      + L++
Sbjct: 6  LRCDLQDHFEHVCVLQLPVRVRLTNGTRLAGTADTLRVVQGLESLQLQSQRGIELVPLNE 65

Query: 68 ITSFSHPEIGTVV 80
          I + S+P+ G   
Sbjct: 66 IATLSYPQAGQTR 78


>UniRef50_Q3SIL6 Transcriptional antiterminator, Rof n=1 Tax=Thiobacillus
          denitrificans ATCC 25259 RepID=Q3SIL6_THIDA
          Length = 75

 Score = 68.7 bits (167), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 2/72 (2%)

Query: 4  TYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVEYLVVEAAGET-RE 62
           Y PI C  ++ LE A      L ++  DG+K + +  D+ +R+  E+L  E  G     
Sbjct: 5  PYAPIPCAQHERLEFAALTGQWLEVK-IDGQKQRLRPLDVYTREGAEWLRAETDGGEALT 63

Query: 63 LRLDKITSFSHP 74
          LRLD++      
Sbjct: 64 LRLDRLVLAEDA 75


>UniRef50_Q2BPA6 Putative uncharacterized protein n=1 Tax=Neptuniibacter
          caesariensis RepID=Q2BPA6_9GAMM
          Length = 80

 Score = 67.5 bits (164), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 4/72 (5%)

Query: 3  DTYQPINCDDYDNLELACQHHLMLTLELKDG---EKLQAKASDLVSRKNVEYLVVEAAG- 58
            Y PINC+ +D  ELAC    +  +E  D       + +  DL   K  E+L+ E    
Sbjct: 5  QQYTPINCEIHDGYELACMRKAIHNVEWIDQGKTHSEKLRFLDLEYSKKGEFLIAENEQK 64

Query: 59 ETRELRLDKITS 70
          E R++RLD I S
Sbjct: 65 EPRKIRLDSIFS 76


>UniRef50_Q0A5U7 Transcriptional antiterminator, Rof n=1 Tax=Alkalilimnicola
          ehrlichii MLHE-1 RepID=Q0A5U7_ALHEH
          Length = 83

 Score = 67.1 bits (163), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 4/75 (5%)

Query: 2  NDTYQPINCDDYDNLELACQHHLMLTLELKD---GEKLQAKASDLVSRKNVEYLVVEA-A 57
          ND Y+PI+C+ Y  LEL   H   L +  +             DL +R   EYLV     
Sbjct: 7  NDDYRPISCERYAELELHIMHARRLRVAWRTPQGQHIDTLIPEDLHTRDGAEYLVARNRL 66

Query: 58 GETRELRLDKITSFS 72
          GE   +RLD++  F 
Sbjct: 67 GEAFIIRLDQLQRFR 81


>UniRef50_B9TIC6 Putative uncharacterized protein n=1 Tax=Ricinus communis
          RepID=B9TIC6_RICCO
          Length = 78

 Score = 66.7 bits (162), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 7/80 (8%)

Query: 1  MNDTYQPINCDDYDN-LELACQHH-LMLTLELKDG--EKLQAKASDLVSRKNVEYLVVEA 56
          M+  Y PI+C+ +D  L LA       LT+   DG  + L     D+ +   VEYL +  
Sbjct: 1  MDQPYIPIDCERHDELLALATLRRPCTLTVARPDGTLDNLAGVIEDVYADTGVEYLRLRG 60

Query: 57 AGETRELRLDKITSFSHPEI 76
                +RLD I + +    
Sbjct: 61 GP---TVRLDWIRALNGRPF 77


>UniRef50_B8K818 Putative uncharacterized protein n=1 Tax=Vibrio parahaemolyticus
          16 RepID=B8K818_VIBPA
          Length = 74

 Score = 65.2 bits (158), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 5/66 (7%)

Query: 21 QHHLMLTLELKDGEKLQAKASDL-VSRKNVEYLVVEAAGETRELRLDKITSFS----HPE 75
               + L LK G+K+Q  A D   +    E +++E       + LD I        +P 
Sbjct: 1  MFRYPVVLTLKSGDKVQGTAIDTVRNDNKEECVLLETLNGASYVLLDSIVQLEVSVDNPH 60

Query: 76 IGTVVV 81
              V 
Sbjct: 61 FKKKVF 66


>UniRef50_Q081B6 Transcriptional antiterminator, Rof n=1 Tax=Shewanella
          frigidimarina NCIMB 400 RepID=Q081B6_SHEFN
          Length = 88

 Score = 65.2 bits (158), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 37/86 (43%), Gaps = 9/86 (10%)

Query: 7  PINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDL----VSRKNVEYLV-VEAAGETR 61
          PI C+ YD +E+ C +   + L L DG  +Q +   +     +++  E +  +    +  
Sbjct: 3  PIKCEIYDYIEIICLYRYRVKLTLTDGTHIQGQFDRILYVNRNQQKHEAIAGINQQQQAI 62

Query: 62 ELRLDKITSF----SHPEIGTVVVSE 83
          E+ L  ITS      +     + + E
Sbjct: 63 EVILTYITSIDVLSQNASFSHISLIE 88


>UniRef50_Q12MD8 Transcriptional antiterminator, Rof n=1 Tax=Shewanella
           denitrificans OS217 RepID=Q12MD8_SHEDO
          Length = 106

 Score = 62.1 bits (150), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 33/85 (38%), Gaps = 9/85 (10%)

Query: 6   QPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRK----NVEYLV-VEAAGET 60
           + I C DYD +E+ C H   +T+ +KD  + + +       +      E +V  +     
Sbjct: 21  RHIRCADYDYIEIMCLHRYRVTVMMKDLTQYEGQFHTTSIIEFEGIKREAIVGFDINQAP 80

Query: 61  RELRLDKITSFS----HPEIGTVVV 81
            +L  + I S S      +   +  
Sbjct: 81  IQLMFEDILSISVHDDKAQFSRLQF 105


>UniRef50_A6F9S9 Putative uncharacterized protein n=1 Tax=Moritella sp. PE36
          RepID=A6F9S9_9GAMM
          Length = 67

 Score = 60.6 bits (146), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 5/66 (7%)

Query: 21 QHHLMLTLELKDGEKLQAKASDLVSRKNV-EYLVVEAAGETRELRLDKITSFS----HPE 75
           H   + L LK G ++  K  D     N  E + +   G T  + LD I +      +P 
Sbjct: 1  MHQYPIKLMLKSGVEIVGKGLDTKRNDNRDECIQMMVDGVTSLVVLDTILTLEVTVDNPH 60

Query: 76 IGTVVV 81
             V  
Sbjct: 61 FKLVTF 66


>UniRef50_C6NSC5 Transcriptional antiterminator, Rof n=1 Tax=Acidithiobacillus
          caldus ATCC 51756 RepID=C6NSC5_9GAMM
          Length = 75

 Score = 60.2 bits (145), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 31/61 (50%)

Query: 4  TYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVEYLVVEAAGETREL 63
           Y PI C  +  LELA      + L+L+DG +L+   +D+ + K  EYL + +     ++
Sbjct: 6  PYIPIGCALHSELELAAIQRRRVRLQLRDGRELRGIIADVWTEKGREYLRLRSEDGKEQV 65

Query: 64 R 64
           
Sbjct: 66 V 66


>UniRef50_Q0KB30 Putative uncharacterized protein h16_A1662 n=1 Tax=Ralstonia
          eutropha H16 RepID=Q0KB30_RALEH
          Length = 83

 Score = 59.0 bits (142), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 7/74 (9%)

Query: 4  TYQPINCDDYDNLELACQHHLMLTLELKDG----EKLQAKASDLVSRKNVEYLVVEAAGE 59
           Y PI+C+ +D LE          +  +D     ++     +D+ S    EYL ++    
Sbjct: 7  QYSPISCEFHDRLEDLATVRRPTQIHYRDADGLLQQRTETITDVYSLGGAEYLTLKTGE- 65

Query: 60 TRELRLDKITSFSH 73
             LRLD++     
Sbjct: 66 --TLRLDQLLEVDG 77


>UniRef50_D1KE28 Putative uncharacterized protein n=1 Tax=uncultured SUP05 cluster
          bacterium RepID=D1KE28_9GAMM
          Length = 71

 Score = 57.1 bits (137), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 2/68 (2%)

Query: 3  DTYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVEYLV-VEAAGETR 61
            YQ I+C+ +   ELA   +  + +   +G+    +  D+VS+   E+L+ ++     +
Sbjct: 2  SDYQRISCEAHSVYELAIMRNQSIEVT-INGKPQTIQPQDIVSKSGEEFLIFLDKEDTRK 60

Query: 62 ELRLDKIT 69
          ELR D+I 
Sbjct: 61 ELRADQII 68


>UniRef50_C7PBT9 Putative uncharacterized protein n=1 Tax=Chitinophaga pinensis
          DSM 2588 RepID=C7PBT9_CHIPD
          Length = 84

 Score = 54.0 bits (129), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 7/76 (9%)

Query: 2  NDTYQPINCDDYDNLELACQHHLMLTLELKDGE----KLQAKASDLVSRKNVEYLVVEAA 57
          N+ YQPI+C+ YD LE       +  +  +D E     + A+  D+ +   VEY+ ++  
Sbjct: 5  NNPYQPIDCNYYDRLEAWATMRTICQIIFRDEEGKEQDVTARIEDVYALNKVEYMRMDNG 64

Query: 58 GETRELRLDKITSFSH 73
               +RLD + S ++
Sbjct: 65 ---LVIRLDSLLSVNN 77


>UniRef50_Q3JEK1 Putative uncharacterized protein n=2 Tax=Nitrosococcus oceani
          RepID=Q3JEK1_NITOC
          Length = 85

 Score = 44.0 bits (103), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 33/74 (44%), Gaps = 7/74 (9%)

Query: 4  TYQPINCDDYDNLELACQHHLMLTLELK--DGEKLQA--KASDLVSRKNVEYLVVEAAGE 59
           Y PINC+ +D LE          +  +  DG+ ++     +D+ ++   E+ V+ +   
Sbjct: 3  DYIPINCNFHDQLEALATLRKQCHIFYQTMDGKIIETLDTITDIYTKNQEEFTVLGSGE- 61

Query: 60 TRELRLDKITSFSH 73
             +RLD++     
Sbjct: 62 --IIRLDRLLEVDG 73


>UniRef50_B0C103 Putative uncharacterized protein n=1 Tax=Acaryochloris marina
          MBIC11017 RepID=B0C103_ACAM1
          Length = 86

 Score = 42.5 bits (99), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/83 (14%), Positives = 32/83 (38%), Gaps = 10/83 (12%)

Query: 6  QPINCDDYDNLELACQHHLMLTLELKD----GEKLQAKASDLVSRKNVEYLVVEAAGETR 61
          + + C  +D LE          +  +D     + + +K  D+ +    +++ ++      
Sbjct: 5  RLVACSFHDELEAWATLRQDCQIIYRDEKGQNQTVNSKIIDVYAANQADFIKLQDG---S 61

Query: 62 ELRLDKITSFSHPEIGTVVVSES 84
           +RLD + S +      +  + S
Sbjct: 62 IIRLDYLISVND---KPIQFANS 81


Searching..................................................done


Results from round 3


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_P0AFW8 Protein rof n=144 Tax=Enterobacteriaceae RepID=R...   106   3e-22
UniRef50_D0KJR0 Transcriptional antiterminator, Rof n=14 Tax=Ent...   101   9e-21
UniRef50_Q8D5E4 Transcriptional antiterminator n=2 Tax=Vibrio vu...    97   2e-19
UniRef50_D0FPX3 Rho-binding antiterminator protein n=2 Tax=Erwin...    96   3e-19
UniRef50_C1M505 Transcriptional antiterminator n=1 Tax=Citrobact...    95   8e-19
UniRef50_C3NZ10 Transcriptional antiterminator n=31 Tax=Vibrio R...    93   4e-18
UniRef50_A3Y5G8 Putative uncharacterized protein n=1 Tax=Marinom...    91   7e-18
UniRef50_A9L641 Transcriptional antiterminator, Rof n=8 Tax=Gamm...    91   8e-18
UniRef50_A7JY17 Transcriptional antiterminator n=8 Tax=Vibrio Re...    91   1e-17
UniRef50_Q2C9D0 Transcriptional antiterminator n=2 Tax=Photobact...    90   2e-17
UniRef50_Q3KB29 Modulator of Rho-dependent transcription termina...    90   2e-17
UniRef50_Q15V95 Transcriptional antiterminator, Rof n=1 Tax=Pseu...    89   3e-17
UniRef50_Q1N2D2 Putative uncharacterized protein n=1 Tax=Bermane...    89   5e-17
UniRef50_C9NTU8 Transcriptional antiterminator n=1 Tax=Vibrio co...    88   8e-17
UniRef50_B5EMC6 Transcriptional antiterminator, Rof n=2 Tax=Acid...    88   1e-16
UniRef50_A0Y0U5 Putative uncharacterized protein n=1 Tax=Alterom...    87   2e-16
UniRef50_B3PH51 Modulator of Rho-dependent transcription termina...    86   3e-16
UniRef50_C9PFC4 Transcriptional antiterminator n=1 Tax=Vibrio fu...    86   3e-16
UniRef50_UPI0001AEC500 hypothetical protein AmacA2_18706 n=1 Tax...    83   3e-15
UniRef50_A3Q9J2 Transcriptional antiterminator, Rof n=7 Tax=Shew...    82   6e-15
UniRef50_B0TMP4 Transcriptional antiterminator, Rof n=9 Tax=Gamm...    82   7e-15
UniRef50_C6MBY6 Transcriptional antiterminator, Rof n=1 Tax=Nitr...    81   2e-14
UniRef50_B1KQ80 Transcriptional antiterminator, Rof n=1 Tax=Shew...    80   2e-14
UniRef50_B9ZK57 Transcriptional antiterminator, Rof n=1 Tax=Thio...    80   2e-14
UniRef50_Q0AJD0 Transcriptional antiterminator, Rof n=2 Tax=Nitr...    80   2e-14
UniRef50_A4STJ9 Modulator of Rho-dependent transcription termina...    77   1e-13
UniRef50_A1ZYH1 Putative uncharacterized protein n=1 Tax=Microsc...    77   2e-13
UniRef50_A8H694 Transcriptional antiterminator, Rof n=1 Tax=Shew...    77   2e-13
UniRef50_A4CFB2 Putative uncharacterized protein n=1 Tax=Pseudoa...    76   5e-13
UniRef50_B8GPB7 Transcriptional antiterminator, Rof n=1 Tax=Thio...    73   4e-12
UniRef50_Q3SIL6 Transcriptional antiterminator, Rof n=1 Tax=Thio...    72   6e-12
UniRef50_B9TIC6 Putative uncharacterized protein n=1 Tax=Ricinus...    72   6e-12
UniRef50_Q47UI2 Putative uncharacterized protein n=1 Tax=Colwell...    71   8e-12
UniRef50_C7PBT9 Putative uncharacterized protein n=1 Tax=Chitino...    70   2e-11
UniRef50_A4BCS7 Putative uncharacterized protein n=1 Tax=Reineke...    70   3e-11
UniRef50_B8K818 Putative uncharacterized protein n=1 Tax=Vibrio ...    69   4e-11
UniRef50_Q0A5U7 Transcriptional antiterminator, Rof n=1 Tax=Alka...    68   1e-10
UniRef50_Q2BPA6 Putative uncharacterized protein n=1 Tax=Neptuni...    68   1e-10
UniRef50_Q081B6 Transcriptional antiterminator, Rof n=1 Tax=Shew...    68   1e-10
UniRef50_A6F9S9 Putative uncharacterized protein n=1 Tax=Moritel...    64   2e-09
UniRef50_Q12MD8 Transcriptional antiterminator, Rof n=1 Tax=Shew...    64   2e-09
UniRef50_C6NSC5 Transcriptional antiterminator, Rof n=1 Tax=Acid...    63   2e-09
UniRef50_Q0KB30 Putative uncharacterized protein h16_A1662 n=1 T...    63   3e-09
UniRef50_Q3JEK1 Putative uncharacterized protein n=2 Tax=Nitroso...    59   7e-08
UniRef50_D1KE28 Putative uncharacterized protein n=1 Tax=uncultu...    58   1e-07

Sequences not found previously or not previously below threshold:

UniRef50_B0C103 Putative uncharacterized protein n=1 Tax=Acaryoc...    51   2e-05
UniRef50_Q092N8 Putative uncharacterized protein n=1 Tax=Stigmat...    40   0.026
UniRef50_A6F2I2 Putative uncharacterized protein n=1 Tax=Marinob...    39   0.034

>UniRef50_P0AFW8 Protein rof n=144 Tax=Enterobacteriaceae RepID=ROF_ECOLI
          Length = 84

 Score =  106 bits (265), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 84/84 (100%), Positives = 84/84 (100%)

Query: 1  MNDTYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVEYLVVEAAGET 60
          MNDTYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVEYLVVEAAGET
Sbjct: 1  MNDTYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVEYLVVEAAGET 60

Query: 61 RELRLDKITSFSHPEIGTVVVSES 84
          RELRLDKITSFSHPEIGTVVVSES
Sbjct: 61 RELRLDKITSFSHPEIGTVVVSES 84


>UniRef50_D0KJR0 Transcriptional antiterminator, Rof n=14 Tax=Enterobacteriaceae
          RepID=D0KJR0_PECWW
          Length = 86

 Score =  101 bits (252), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 58/84 (69%), Positives = 70/84 (83%)

Query: 1  MNDTYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVEYLVVEAAGET 60
          M++ YQPINCDDYD+LE  CQ  L LTLEL++GE +  KASD++SRK +EYLV+EA+G T
Sbjct: 3  MSNEYQPINCDDYDSLEATCQQSLTLTLELRNGEVVTGKASDMISRKQIEYLVIEASGAT 62

Query: 61 RELRLDKITSFSHPEIGTVVVSES 84
          RELRLD I SFSHPEIG +VVSES
Sbjct: 63 RELRLDHIVSFSHPEIGKIVVSES 86


>UniRef50_Q8D5E4 Transcriptional antiterminator n=2 Tax=Vibrio vulnificus
          RepID=Q8D5E4_VIBVU
          Length = 82

 Score = 96.8 bits (240), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 5/82 (6%)

Query: 7  PINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDL-VSRKNVEYLVVEAAGETRELRL 65
           I+C+ YD LE+AC + + + L LKDG ++     +   +    E L VE  G+   +  
Sbjct: 1  MISCNQYDYLEIACLYRIGVCLTLKDGSEISGVPVNTGFNEHKQECLEVETGGDALWVPT 60

Query: 66 DKITSF----SHPEIGTVVVSE 83
          D I +      +P    +   +
Sbjct: 61 DMILTMQALTENPHFTKIEFEQ 82


>UniRef50_D0FPX3 Rho-binding antiterminator protein n=2 Tax=Erwinia pyrifoliae
          RepID=D0FPX3_ERWPY
          Length = 87

 Score = 96.0 bits (238), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 54/82 (65%), Positives = 69/82 (84%)

Query: 2  NDTYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVEYLVVEAAGETR 61
          N+ Y+PINCDDYDNLELACQ+  +LTL LK+ E+L+A+A  ++SRKNVEYL ++ AG  R
Sbjct: 4  NEVYKPINCDDYDNLELACQNKWLLTLVLKNSEQLEARAEGILSRKNVEYLSIQVAGACR 63

Query: 62 ELRLDKITSFSHPEIGTVVVSE 83
          +LRLD I SFSHP++GTVVVSE
Sbjct: 64 DLRLDHILSFSHPQLGTVVVSE 85


>UniRef50_C1M505 Transcriptional antiterminator n=1 Tax=Citrobacter sp. 30_2
          RepID=C1M505_9ENTR
          Length = 95

 Score = 94.9 bits (235), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 5/88 (5%)

Query: 2  NDTYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDL-VSRKNVEYLVVEAAGET 60
           + Y PI+CD +D LE+AC +H  L +EL DG    AKA     + +  E+LVV  +   
Sbjct: 5  TEEYHPIDCDLHDYLEIACMYHYWLRIELTDGTCFDAKALTTCTTVEKEEFLVVGQSENQ 64

Query: 61 RELRLDKITSFS----HPEIGTVVVSES 84
          +++RLD +++ +         TV    +
Sbjct: 65 QKIRLDYLSAITALTPGATFSTVSFQRA 92


>UniRef50_C3NZ10 Transcriptional antiterminator n=31 Tax=Vibrio RepID=C3NZ10_VIBCJ
          Length = 81

 Score = 92.5 bits (229), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 5/80 (6%)

Query: 7  PINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDL-VSRKNVEYLVVEAAGETRELRL 65
           ++C  YD +ELAC  HL + L +K GE     A+D   + +  E + +    ET  L  
Sbjct: 1  MVSCSQYDYIELACLFHLPVKLTMKSGEVYYGVAADTQRNSQKQECIALRGEEETWLLET 60

Query: 66 DKITSFSH----PEIGTVVV 81
          D+++S       P    +  
Sbjct: 61 DQLSSMEALSEQPHFSVIHF 80


>UniRef50_A3Y5G8 Putative uncharacterized protein n=1 Tax=Marinomonas sp. MED121
          RepID=A3Y5G8_9GAMM
          Length = 83

 Score = 91.4 bits (226), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 39/80 (48%), Gaps = 5/80 (6%)

Query: 7  PINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDL-VSRKNVEYLVVEAAGETRELRL 65
           + C+ +D +ELAC +   + L L++G++++ +A D   +      L ++   E + + L
Sbjct: 3  MMTCEQHDYIELACVYLYEINLTLRNGDQVKGQALDTLYNDDKEACLCIKQGEEVKLVVL 62

Query: 66 DKITSF----SHPEIGTVVV 81
          D+I        +P    ++ 
Sbjct: 63 DQIVGMRACQENPHFHHILF 82


>UniRef50_A9L641 Transcriptional antiterminator, Rof n=8 Tax=Gammaproteobacteria
          RepID=A9L641_SHEB9
          Length = 90

 Score = 91.4 bits (226), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 5/85 (5%)

Query: 3  DTYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSR-KNVEYLVVEAAGETR 61
            Y+ I C+ YD LELAC     L +EL DG + Q +A    +R    E+LV++     +
Sbjct: 2  SDYKMIPCEHYDYLELACLRGYQLKIELIDGTQCQGQAITTQTRADKTEWLVIQQQQNKQ 61

Query: 62 ELRLDKITSFS----HPEIGTVVVS 82
           LRLD I + +    H E G + ++
Sbjct: 62 SLRLDHIVAITPVDVHAEFGRMQIA 86


>UniRef50_A7JY17 Transcriptional antiterminator n=8 Tax=Vibrio RepID=A7JY17_VIBSE
          Length = 81

 Score = 90.6 bits (224), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 5/81 (6%)

Query: 7  PINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDL-VSRKNVEYLVVEAAGETRELRL 65
           + C  YD +E+AC   L + + LK+GE  Q  A D     +  E L ++  GE      
Sbjct: 1  MVTCSQYDFIEIACMFKLPIEITLKNGETHQGNAFDTGYDMQRQECLFLDMDGEHTAFPT 60

Query: 66 DKITSFS----HPEIGTVVVS 82
          +++ +      +P    V   
Sbjct: 61 EQLVAMRALKANPHFDEVTFE 81


>UniRef50_Q2C9D0 Transcriptional antiterminator n=2 Tax=Photobacterium
          RepID=Q2C9D0_9GAMM
          Length = 80

 Score = 90.2 bits (223), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 5/80 (6%)

Query: 7  PINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDL-VSRKNVEYLVVEAAGETRELRL 65
           I+C  +D +E+AC  HL ++L  ++GE++   A D   +    E + ++       + L
Sbjct: 1  MISCHQHDYIEIACMLHLDVSLTYRNGERISGIAQDTCYNAHREECIELKINNTVSRIVL 60

Query: 66 DKITSFS----HPEIGTVVV 81
          D + S      +P   TV  
Sbjct: 61 DHLASMQALTANPHFETVNF 80


>UniRef50_Q3KB29 Modulator of Rho-dependent transcription termination n=8
          Tax=Gammaproteobacteria RepID=Q3KB29_PSEPF
          Length = 92

 Score = 89.9 bits (222), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/85 (38%), Positives = 51/85 (60%), Gaps = 5/85 (5%)

Query: 5  YQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVS-RKNVEYLVVEAAGETREL 63
          YQP+NCD YD LE+AC     L +EL DG++L AKA    +     E+LV+E     +E+
Sbjct: 4  YQPLNCDLYDYLEIACLRGYQLDIELIDGQRLMAKAVTTRTSSDKEEFLVIEQQAAQQEI 63

Query: 64 RLDKITSF----SHPEIGTVVVSES 84
          RLD++ +     ++ E G V+++E 
Sbjct: 64 RLDQLLAITPQETNAEFGRVILAEG 88


>UniRef50_Q15V95 Transcriptional antiterminator, Rof n=1 Tax=Pseudoalteromonas
          atlantica T6c RepID=Q15V95_PSEA6
          Length = 90

 Score = 89.5 bits (221), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 41/82 (50%), Gaps = 5/82 (6%)

Query: 8  INCDDYDNLELACQHHLMLTLELKDGEKLQAKASDL-VSRKNVEYLVVEAAGETRELRLD 66
          + C + D +ELAC  ++ + L L+DG +++  A D   +++  E +V+ +A     + L+
Sbjct: 1  MKCAEQDYIELACLFNMPILLRLRDGSEIKGTAKDTSYNKQKQECIVLHSAEGECSIALN 60

Query: 67 KITSFS----HPEIGTVVVSES 84
           I        +P    +  S+S
Sbjct: 61 LIALMQAQHANPHFSEIRFSKS 82


>UniRef50_Q1N2D2 Putative uncharacterized protein n=1 Tax=Bermanella marisrubri
          RepID=Q1N2D2_9GAMM
          Length = 81

 Score = 88.7 bits (219), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 14/81 (17%), Positives = 36/81 (44%), Gaps = 5/81 (6%)

Query: 7  PINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDL-VSRKNVEYLVVEAAGETRELRL 65
           + C  +D +E+AC + + + LEL+ GE ++  A D    ++    +++      + + +
Sbjct: 1  MVTCAQHDYIEIACLYQISVCLELEHGEFVKGIALDTAYDQQKRHCILINTDEGDQWIPI 60

Query: 66 DKITSF----SHPEIGTVVVS 82
          D + +      +P    +   
Sbjct: 61 DSLCAMHAMSKNPHFSEIYFQ 81


>UniRef50_C9NTU8 Transcriptional antiterminator n=1 Tax=Vibrio coralliilyticus
          ATCC BAA-450 RepID=C9NTU8_9VIBR
          Length = 84

 Score = 87.9 bits (217), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 38/82 (46%), Gaps = 5/82 (6%)

Query: 7  PINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDL-VSRKNVEYLVVEAAGETRELRL 65
           I+C+ YD +E+AC +H+ + L  + G+ ++ KA          E +V+  A    +L  
Sbjct: 1  MISCNQYDYIEIACLYHIPVRLVTESGQIVEGKAMTTSYDSHRRESIVIATATGETQLPT 60

Query: 66 DKITSF----SHPEIGTVVVSE 83
          + + S      +P    +  ++
Sbjct: 61 EALVSMTALIENPHFKDIKFTQ 82


>UniRef50_B5EMC6 Transcriptional antiterminator, Rof n=2 Tax=Acidithiobacillus
          ferrooxidans RepID=B5EMC6_ACIF5
          Length = 77

 Score = 87.5 bits (216), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 30/72 (41%)

Query: 1  MNDTYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVEYLVVEAAGET 60
          M+  Y+PI+C+ +  LELA        L + DG        D+ + +  E+L +      
Sbjct: 1  MHSAYKPISCELHSALELAAMRRRPARLHMTDGSWQDGIILDVWTEQGREWLCLRRLDGD 60

Query: 61 RELRLDKITSFS 72
           E+ L  I    
Sbjct: 61 VEIDLTHIQQVQ 72


>UniRef50_A0Y0U5 Putative uncharacterized protein n=1 Tax=Alteromonadales
          bacterium TW-7 RepID=A0Y0U5_9GAMM
          Length = 83

 Score = 87.2 bits (215), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 5/80 (6%)

Query: 7  PINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDL-VSRKNVEYLVVEAAGETRELRL 65
           I+C+ YD +E+AC HHL + L LK+G+ +   A+D+  +    E + +  +GE + + L
Sbjct: 1  MISCNHYDYIEIACMHHLSIELILKNGDVVCGVAADIKRNALKQECIAINVSGELKLIVL 60

Query: 66 DKITSF----SHPEIGTVVV 81
          + I+      S+P    V  
Sbjct: 61 NTISVLKARESNPYFENVNF 80


>UniRef50_B3PH51 Modulator of Rho-dependent transcription termination (ROF)
          superfamily n=1 Tax=Cellvibrio japonicus Ueda107
          RepID=B3PH51_CELJU
          Length = 81

 Score = 86.0 bits (212), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 35/80 (43%), Gaps = 5/80 (6%)

Query: 7  PINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDL-VSRKNVEYLVVEAAGETRELRL 65
           I+CD +D +E+ C +H  + L L  G  ++  A D   + +  E + +      + + L
Sbjct: 1  MIHCDQHDYIEIVCLYHYPIRLTLTSGATIEGIAQDTQHNDQREECIKLSTDTGEQLVVL 60

Query: 66 DKITSF----SHPEIGTVVV 81
           ++        +P +  VV 
Sbjct: 61 SELKQLDVLVENPHVERVVF 80


>UniRef50_C9PFC4 Transcriptional antiterminator n=1 Tax=Vibrio furnissii CIP
          102972 RepID=C9PFC4_VIBFU
          Length = 83

 Score = 86.0 bits (212), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 36/82 (43%), Gaps = 5/82 (6%)

Query: 7  PINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDL-VSRKNVEYLVVEAAGETRELRL 65
           I+C  YD +ELAC +   + + L +G+ +Q  A     + +  E LV++ A   R +  
Sbjct: 1  MISCSQYDAIELACVYQFPVAVTLLNGDVVQGIAKGTGYNAERQECLVLQQAECERWVET 60

Query: 66 DKI----TSFSHPEIGTVVVSE 83
            +        +P +  +   +
Sbjct: 61 ATLRRMQVLIENPHLSDIHFQQ 82


>UniRef50_UPI0001AEC500 hypothetical protein AmacA2_18706 n=1 Tax=Alteromonas macleodii
          ATCC 27126 RepID=UPI0001AEC500
          Length = 84

 Score = 82.9 bits (204), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 8/82 (9%)

Query: 8  INCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKN----VEYLVVEAAGETREL 63
          I C  YD +E+AC + L +++ LKDG  ++  A   V  K      E + +     T+ +
Sbjct: 3  IACQLYDYIEIACMYGLEVSVVLKDGNTVKGTALTTVIDKRNDVATECIQMSIDKTTQNI 62

Query: 64 RLDKITSF----SHPEIGTVVV 81
           L++I        +P   +V  
Sbjct: 63 ALNEIAQLDAITDNPHFSSVSF 84


>UniRef50_A3Q9J2 Transcriptional antiterminator, Rof n=7 Tax=Shewanella
          RepID=A3Q9J2_SHELP
          Length = 93

 Score = 81.8 bits (201), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 4/86 (4%)

Query: 3  DTYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVEYLVVEAAGETRE 62
            Y+ I+C  +D+LELAC     L +E   GE      +        EYL V      + 
Sbjct: 2  QPYRIIDCHVHDHLELACIRGYQLLIETSTGEMRATAITLTTQADKSEYLTVRNEAGEQA 61

Query: 63 LRLDKITSF----SHPEIGTVVVSES 84
          +RLD I +            VV++ +
Sbjct: 62 IRLDHIQAITPLTQGAAFDRVVIAPA 87


>UniRef50_B0TMP4 Transcriptional antiterminator, Rof n=9 Tax=Gammaproteobacteria
          RepID=B0TMP4_SHEHH
          Length = 100

 Score = 81.8 bits (201), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 36/99 (36%), Gaps = 24/99 (24%)

Query: 7  PINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDL-VSRKNVEYLVV----------- 54
           I+C+ YD +E+ C +   + L+LK GE +   A D     K  E + +           
Sbjct: 1  MISCNQYDYIEIVCLYRYPIALKLKSGETISGIALDTARDSKKRECIKLTYQDSPNTDAD 60

Query: 55 --------EAAGETRELRLDKITS----FSHPEIGTVVV 81
                       T+ + LD I S      +P   +V  
Sbjct: 61 DSEDDGVNNDLAVTQLIILDDIASIHVCIDNPHFQSVEF 99


>UniRef50_C6MBY6 Transcriptional antiterminator, Rof n=1 Tax=Nitrosomonas sp.
          AL212 RepID=C6MBY6_9PROT
          Length = 84

 Score = 80.6 bits (198), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 6/80 (7%)

Query: 8  INCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSR-KNVEYLVVEAAGETRELRLD 66
          I+C+ +D +E+AC +   L L LK+   ++  A D+V+  +  E LV++     + + L 
Sbjct: 6  ISCEQHDFVEVACMYRYRLRLVLKNRLIIEGIAIDIVNSPEKQECLVIDNDSRVQ-IELT 64

Query: 67 KITSFS----HPEIGTVVVS 82
          ++ S      + +   V+  
Sbjct: 65 QLVSMEVLTPNAKFREVIFE 84


>UniRef50_B1KQ80 Transcriptional antiterminator, Rof n=1 Tax=Shewanella woodyi
          ATCC 51908 RepID=B1KQ80_SHEWM
          Length = 81

 Score = 80.2 bits (197), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 5/78 (6%)

Query: 7  PINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLV-SRKNVEYLVVEAAGETRELRL 65
           I CD YD +E+AC + + + L L  GE+++  A     +    E+LV++   ET  + L
Sbjct: 1  MIKCDIYDYIEVACLYKIEVLLTLHSGEEVKGVADTTSINGDKQEFLVIKQGTETLNIEL 60

Query: 66 DKITSFS----HPEIGTV 79
            I +      +P   ++
Sbjct: 61 VSIKNMKALTPNPHFSSL 78


>UniRef50_B9ZK57 Transcriptional antiterminator, Rof n=1 Tax=Thioalkalivibrio sp.
          K90mix RepID=B9ZK57_9GAMM
          Length = 82

 Score = 80.2 bits (197), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 4/73 (5%)

Query: 4  TYQPINCDDYDNLELACQHHLMLTLELKDGEKLQ---AKASDLVSRKNVEYLVVEA-AGE 59
           Y PI C+ Y  LELA      L    + GE  +    +  DL +R+  EYL++    G 
Sbjct: 6  PYTPIACERYSELELAILRGQHLRTHWRRGEMDRIAVVRPLDLRTRRGAEYLILRDAEGR 65

Query: 60 TRELRLDKITSFS 72
           +  RLD++ SF 
Sbjct: 66 RQWWRLDRLVSFE 78


>UniRef50_Q0AJD0 Transcriptional antiterminator, Rof n=2 Tax=Nitrosomonas
          RepID=Q0AJD0_NITEC
          Length = 89

 Score = 79.8 bits (196), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 5/84 (5%)

Query: 6  QPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSR-KNVEYLVVEAA---GETR 61
          Q I+CD +D +E+AC +   + L LKD    + KA D+++  +  E+L++E      +  
Sbjct: 3  QHISCDLHDYIEVACMYGYQVRLILKDQSTAEGKAKDILTDTETREFLLLETEIGSQQVE 62

Query: 62 ELRLDKITSFS-HPEIGTVVVSES 84
           + LDK+   +       VV S S
Sbjct: 63 LIFLDKLQVLTPDARFTEVVFSGS 86


>UniRef50_A4STJ9 Modulator of Rho-dependent transcription termination n=1
          Tax=Aeromonas salmonicida subsp. salmonicida A449
          RepID=A4STJ9_AERS4
          Length = 84

 Score = 77.1 bits (189), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 34/65 (52%)

Query: 4  TYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVEYLVVEAAGETREL 63
           YQPI+CD YD LE+A    L +TL  +DG +   K   + + + VEYL++ +       
Sbjct: 3  DYQPISCDLYDWLEIAASWQLPVTLASRDGHQWDDKIRTIEASEGVEYLLLHSGERLSLG 62

Query: 64 RLDKI 68
           L  +
Sbjct: 63 DLATL 67


>UniRef50_A1ZYH1 Putative uncharacterized protein n=1 Tax=Microscilla marina ATCC
          23134 RepID=A1ZYH1_9SPHI
          Length = 84

 Score = 77.1 bits (189), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 28/77 (36%), Gaps = 7/77 (9%)

Query: 4  TYQPINCDDYDNLELACQHHLMLTLELKDGEKLQA----KASDLVSRKNVEYLVVEAAGE 59
           Y PINC  YD LE          +   D +  +A       DL  +  VEY+       
Sbjct: 6  PYNPINCSLYDYLEAWAVTQTPCKVTYLDAQNKEAYFTKTIVDLYIKDKVEYVKWNDG-- 63

Query: 60 TRELRLDKITSFSHPEI 76
             LRLD++   +    
Sbjct: 64 -SSLRLDQLIEINGVRF 79


>UniRef50_A8H694 Transcriptional antiterminator, Rof n=1 Tax=Shewanella pealeana
           ATCC 700345 RepID=A8H694_SHEPA
          Length = 102

 Score = 77.1 bits (189), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 37/101 (36%), Gaps = 26/101 (25%)

Query: 7   PINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDL-VSRKNVEYL------------- 52
            ++C  +D +EL C  +  + L +K+G+ +  KA D   + +    +             
Sbjct: 1   MLSCSQHDYIELVCIFNYPIKLTMKNGDSISGKALDTCRNTQKQHCIKLVCKQQNCIKGS 60

Query: 53  --------VVEAAGETRELRLDKITSFS----HPEIGTVVV 81
                    +    E R + LD I S      +P +  + +
Sbjct: 61  HSQSSPETQLSDEAEHRLIVLDDIASMQVCVDNPHLDRIEL 101


>UniRef50_A4CFB2 Putative uncharacterized protein n=1 Tax=Pseudoalteromonas
          tunicata D2 RepID=A4CFB2_9GAMM
          Length = 82

 Score = 75.6 bits (185), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 36/82 (43%), Gaps = 8/82 (9%)

Query: 8  INCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRK----NVEYLVVEAAGETREL 63
          ++C D+D +E+AC +   L + L + ++ +  A     R+      E L+++ +    E+
Sbjct: 1  MDCADHDFIEVACLYQYRLKISLCNNQQKEGIALTTQVRQQGVLKAELLIIQTSAGNEEI 60

Query: 64 RLDKITSFS----HPEIGTVVV 81
           LD+I        +     +  
Sbjct: 61 VLDEIKQIEALTSNAYFSVLTF 82


>UniRef50_B8GPB7 Transcriptional antiterminator, Rof n=1 Tax=Thioalkalivibrio sp.
          HL-EbGR7 RepID=B8GPB7_THISH
          Length = 82

 Score = 72.5 bits (177), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 5/77 (6%)

Query: 1  MNDTYQPINCDDYDNLELACQHHLMLTLELKD----GEKLQAKASDLVSRKNVEYLVVEA 56
          M   Y PI+C+ Y   ELA      L +  KD          + +DL +R++ E+++   
Sbjct: 1  MTSDYTPISCELYSEYELAIMRGRTLKVRWKDRYGMDRVETLRPTDLRTRRHAEFMIARN 60

Query: 57 A-GETRELRLDKITSFS 72
            G+ R LRLD+I    
Sbjct: 61 QLGQRRVLRLDRIVETQ 77


>UniRef50_Q3SIL6 Transcriptional antiterminator, Rof n=1 Tax=Thiobacillus
          denitrificans ATCC 25259 RepID=Q3SIL6_THIDA
          Length = 75

 Score = 71.7 bits (175), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 2/72 (2%)

Query: 4  TYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVEYLVVEAAGET-RE 62
           Y PI C  ++ LE A      L ++  DG+K + +  D+ +R+  E+L  E  G     
Sbjct: 5  PYAPIPCAQHERLEFAALTGQWLEVK-IDGQKQRLRPLDVYTREGAEWLRAETDGGEALT 63

Query: 63 LRLDKITSFSHP 74
          LRLD++      
Sbjct: 64 LRLDRLVLAEDA 75


>UniRef50_B9TIC6 Putative uncharacterized protein n=1 Tax=Ricinus communis
          RepID=B9TIC6_RICCO
          Length = 78

 Score = 71.7 bits (175), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 7/80 (8%)

Query: 1  MNDTYQPINCDDYDNLELACQHHLMLTLEL--KDG--EKLQAKASDLVSRKNVEYLVVEA 56
          M+  Y PI+C+ +D L          TL +   DG  + L     D+ +   VEYL +  
Sbjct: 1  MDQPYIPIDCERHDELLALATLRRPCTLTVARPDGTLDNLAGVIEDVYADTGVEYLRLRG 60

Query: 57 AGETRELRLDKITSFSHPEI 76
                +RLD I + +    
Sbjct: 61 GP---TVRLDWIRALNGRPF 77


>UniRef50_Q47UI2 Putative uncharacterized protein n=1 Tax=Colwellia
          psychrerythraea 34H RepID=Q47UI2_COLP3
          Length = 84

 Score = 71.4 bits (174), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 32/65 (49%)

Query: 8  INCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVEYLVVEAAGETRELRLDK 67
          I+CD +D  E+ C    ++ +  KD +     A+D+   +  EYL +    +T +L L +
Sbjct: 5  ISCDAHDYFEIVCMRRSLIKVTSKDNKIYHGIATDIKLVEKQEYLQISDDIKTEQLLLSE 64

Query: 68 ITSFS 72
          + +  
Sbjct: 65 VKTLE 69


>UniRef50_C7PBT9 Putative uncharacterized protein n=1 Tax=Chitinophaga pinensis
          DSM 2588 RepID=C7PBT9_CHIPD
          Length = 84

 Score = 70.2 bits (171), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 7/76 (9%)

Query: 2  NDTYQPINCDDYDNLELACQHHLMLTLELKDGE----KLQAKASDLVSRKNVEYLVVEAA 57
          N+ YQPI+C+ YD LE       +  +  +D E     + A+  D+ +   VEY+ ++  
Sbjct: 5  NNPYQPIDCNYYDRLEAWATMRTICQIIFRDEEGKEQDVTARIEDVYALNKVEYMRMDNG 64

Query: 58 GETRELRLDKITSFSH 73
               +RLD + S ++
Sbjct: 65 ---LVIRLDSLLSVNN 77


>UniRef50_A4BCS7 Putative uncharacterized protein n=1 Tax=Reinekea blandensis
          MED297 RepID=A4BCS7_9GAMM
          Length = 93

 Score = 69.8 bits (170), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 35/73 (47%)

Query: 8  INCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVEYLVVEAAGETRELRLDK 67
          + CD  D+ E  C   L + + L +G +L   A  L   + +E L +++      + L++
Sbjct: 6  LRCDLQDHFEHVCVLQLPVRVRLTNGTRLAGTADTLRVVQGLESLQLQSQRGIELVPLNE 65

Query: 68 ITSFSHPEIGTVV 80
          I + S+P+ G   
Sbjct: 66 IATLSYPQAGQTR 78


>UniRef50_B8K818 Putative uncharacterized protein n=1 Tax=Vibrio parahaemolyticus
          16 RepID=B8K818_VIBPA
          Length = 74

 Score = 69.1 bits (168), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 5/66 (7%)

Query: 21 QHHLMLTLELKDGEKLQAKASDL-VSRKNVEYLVVEAAGETRELRLDKITSFS----HPE 75
               + L LK G+K+Q  A D   +    E +++E       + LD I        +P 
Sbjct: 1  MFRYPVVLTLKSGDKVQGTAIDTVRNDNKEECVLLETLNGASYVLLDSIVQLEVSVDNPH 60

Query: 76 IGTVVV 81
              V 
Sbjct: 61 FKKKVF 66


>UniRef50_Q0A5U7 Transcriptional antiterminator, Rof n=1 Tax=Alkalilimnicola
          ehrlichii MLHE-1 RepID=Q0A5U7_ALHEH
          Length = 83

 Score = 67.9 bits (165), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 4/75 (5%)

Query: 2  NDTYQPINCDDYDNLELACQHHLMLTLELKD---GEKLQAKASDLVSRKNVEYLVVEA-A 57
          ND Y+PI+C+ Y  LEL   H   L +  +             DL +R   EYLV     
Sbjct: 7  NDDYRPISCERYAELELHIMHARRLRVAWRTPQGQHIDTLIPEDLHTRDGAEYLVARNRL 66

Query: 58 GETRELRLDKITSFS 72
          GE   +RLD++  F 
Sbjct: 67 GEAFIIRLDQLQRFR 81


>UniRef50_Q2BPA6 Putative uncharacterized protein n=1 Tax=Neptuniibacter
          caesariensis RepID=Q2BPA6_9GAMM
          Length = 80

 Score = 67.9 bits (165), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 4/72 (5%)

Query: 3  DTYQPINCDDYDNLELACQHHLMLTLELKDG---EKLQAKASDLVSRKNVEYLVVEAAG- 58
            Y PINC+ +D  ELAC    +  +E  D       + +  DL   K  E+L+ E    
Sbjct: 5  QQYTPINCEIHDGYELACMRKAIHNVEWIDQGKTHSEKLRFLDLEYSKKGEFLIAENEQK 64

Query: 59 ETRELRLDKITS 70
          E R++RLD I S
Sbjct: 65 EPRKIRLDSIFS 76


>UniRef50_Q081B6 Transcriptional antiterminator, Rof n=1 Tax=Shewanella
          frigidimarina NCIMB 400 RepID=Q081B6_SHEFN
          Length = 88

 Score = 67.5 bits (164), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 37/86 (43%), Gaps = 9/86 (10%)

Query: 7  PINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDL----VSRKNVEYLV-VEAAGETR 61
          PI C+ YD +E+ C +   + L L DG  +Q +   +     +++  E +  +    +  
Sbjct: 3  PIKCEIYDYIEIICLYRYRVKLTLTDGTHIQGQFDRILYVNRNQQKHEAIAGINQQQQAI 62

Query: 62 ELRLDKITSF----SHPEIGTVVVSE 83
          E+ L  ITS      +     + + E
Sbjct: 63 EVILTYITSIDVLSQNASFSHISLIE 88


>UniRef50_A6F9S9 Putative uncharacterized protein n=1 Tax=Moritella sp. PE36
          RepID=A6F9S9_9GAMM
          Length = 67

 Score = 64.0 bits (155), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 5/66 (7%)

Query: 21 QHHLMLTLELKDGEKLQAKASDL-VSRKNVEYLVVEAAGETRELRLDKITSFS----HPE 75
           H   + L LK G ++  K  D   +    E + +   G T  + LD I +      +P 
Sbjct: 1  MHQYPIKLMLKSGVEIVGKGLDTKRNDNRDECIQMMVDGVTSLVVLDTILTLEVTVDNPH 60

Query: 76 IGTVVV 81
             V  
Sbjct: 61 FKLVTF 66


>UniRef50_Q12MD8 Transcriptional antiterminator, Rof n=1 Tax=Shewanella
           denitrificans OS217 RepID=Q12MD8_SHEDO
          Length = 106

 Score = 63.7 bits (154), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 32/85 (37%), Gaps = 9/85 (10%)

Query: 6   QPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRK----NVEYLV-VEAAGET 60
           + I C DYD +E+ C H   +T+ +KD  + + +       +      E +V  +     
Sbjct: 21  RHIRCADYDYIEIMCLHRYRVTVMMKDLTQYEGQFHTTSIIEFEGIKREAIVGFDINQAP 80

Query: 61  RELRLDKITSF----SHPEIGTVVV 81
            +L  + I S        +   +  
Sbjct: 81  IQLMFEDILSISVHDDKAQFSRLQF 105


>UniRef50_C6NSC5 Transcriptional antiterminator, Rof n=1 Tax=Acidithiobacillus
          caldus ATCC 51756 RepID=C6NSC5_9GAMM
          Length = 75

 Score = 63.3 bits (153), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 31/61 (50%)

Query: 4  TYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVEYLVVEAAGETREL 63
           Y PI C  +  LELA      + L+L+DG +L+   +D+ + K  EYL + +     ++
Sbjct: 6  PYIPIGCALHSELELAAIQRRRVRLQLRDGRELRGIIADVWTEKGREYLRLRSEDGKEQV 65

Query: 64 R 64
           
Sbjct: 66 V 66


>UniRef50_Q0KB30 Putative uncharacterized protein h16_A1662 n=1 Tax=Ralstonia
          eutropha H16 RepID=Q0KB30_RALEH
          Length = 83

 Score = 62.9 bits (152), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 7/74 (9%)

Query: 4  TYQPINCDDYDNLELACQHHLMLTLELKDG----EKLQAKASDLVSRKNVEYLVVEAAGE 59
           Y PI+C+ +D LE          +  +D     ++     +D+ S    EYL ++    
Sbjct: 7  QYSPISCEFHDRLEDLATVRRPTQIHYRDADGLLQQRTETITDVYSLGGAEYLTLKTGE- 65

Query: 60 TRELRLDKITSFSH 73
             LRLD++     
Sbjct: 66 --TLRLDQLLEVDG 77


>UniRef50_Q3JEK1 Putative uncharacterized protein n=2 Tax=Nitrosococcus oceani
          RepID=Q3JEK1_NITOC
          Length = 85

 Score = 58.7 bits (141), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 33/74 (44%), Gaps = 7/74 (9%)

Query: 4  TYQPINCDDYDNLELACQHHLMLTLELK--DGEKLQA--KASDLVSRKNVEYLVVEAAGE 59
           Y PINC+ +D LE          +  +  DG+ ++     +D+ ++   E+ V+ +   
Sbjct: 3  DYIPINCNFHDQLEALATLRKQCHIFYQTMDGKIIETLDTITDIYTKNQEEFTVLGSGE- 61

Query: 60 TRELRLDKITSFSH 73
             +RLD++     
Sbjct: 62 --IIRLDRLLEVDG 73


>UniRef50_D1KE28 Putative uncharacterized protein n=1 Tax=uncultured SUP05 cluster
          bacterium RepID=D1KE28_9GAMM
          Length = 71

 Score = 57.9 bits (139), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 2/68 (2%)

Query: 3  DTYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVEYLV-VEAAGETR 61
            YQ I+C+ +   ELA   +  + +   +G+    +  D+VS+   E+L+ ++     +
Sbjct: 2  SDYQRISCEAHSVYELAIMRNQSIEVT-INGKPQTIQPQDIVSKSGEEFLIFLDKEDTRK 60

Query: 62 ELRLDKIT 69
          ELR D+I 
Sbjct: 61 ELRADQII 68


>UniRef50_B0C103 Putative uncharacterized protein n=1 Tax=Acaryochloris marina
          MBIC11017 RepID=B0C103_ACAM1
          Length = 86

 Score = 50.6 bits (120), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/83 (14%), Positives = 32/83 (38%), Gaps = 10/83 (12%)

Query: 6  QPINCDDYDNLELACQHHLMLTLELKD----GEKLQAKASDLVSRKNVEYLVVEAAGETR 61
          + + C  +D LE          +  +D     + + +K  D+ +    +++ ++      
Sbjct: 5  RLVACSFHDELEAWATLRQDCQIIYRDEKGQNQTVNSKIIDVYAANQADFIKLQDG---S 61

Query: 62 ELRLDKITSFSHPEIGTVVVSES 84
           +RLD + S +      +  + S
Sbjct: 62 IIRLDYLISVND---KPIQFANS 81


>UniRef50_Q092N8 Putative uncharacterized protein n=1 Tax=Stigmatella aurantiaca
          DW4/3-1 RepID=Q092N8_STIAU
          Length = 79

 Score = 39.8 bits (92), Expect = 0.026,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 3/70 (4%)

Query: 9  NCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVEYLVVEAAGETRELRLDKI 68
           CD  D LE A      + ++L+ GE    +  D+++    E+ V             +I
Sbjct: 11 RCDFLDVLEEAVTRGRPVAVQLRAGETFIDQLLDVLTENGDEFAVFRQHDRVSIG---EI 67

Query: 69 TSFSHPEIGT 78
          ++ S PE   
Sbjct: 68 SAVSRPEPSR 77


>UniRef50_A6F2I2 Putative uncharacterized protein n=1 Tax=Marinobacter algicola
          DG893 RepID=A6F2I2_9ALTE
          Length = 86

 Score = 39.4 bits (91), Expect = 0.034,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 30/76 (39%), Gaps = 7/76 (9%)

Query: 2  NDTYQPINCDDYDNLELACQHHLMLTLELKD--GEKLQA--KASDLVSRKNVEYLVVEAA 57
          ++ Y+P+ C+ +  L        +  +  +D  G+         DL SR   E++ +   
Sbjct: 7  SNAYRPVRCEVHSLLREYLTSSKLAEIVYRDDAGQVCTTHDIIRDLFSRAGQEFVFLGRG 66

Query: 58 GETRELRLDKITSFSH 73
               +RLD + +   
Sbjct: 67 N---MVRLDHVLTLDG 79


  Database: uniref50.fasta
    Posted date:  Mar 8, 2010 10:38 AM
  Number of letters in database: 1,040,396,356
  Number of sequences in database:  3,077,464
  
Lambda     K      H
   0.313    0.161    0.481 

Lambda     K      H
   0.267   0.0502    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 542,445,302
Number of Sequences: 3077464
Number of extensions: 17873805
Number of successful extensions: 31247
Number of sequences better than 1.0e-01: 49
Number of HSP's better than  0.1 without gapping: 120
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 31000
Number of HSP's gapped (non-prelim): 143
length of query: 84
length of database: 1,040,396,356
effective HSP length: 54
effective length of query: 30
effective length of database: 874,213,300
effective search space: 26226399000
effective search space used: 26226399000
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 88 (38.2 bits)
