BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (98 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_D2U2K4 tRNA-dihydrouridine synthase B n=1 Tax=Arsenopho... 188 4e-47 UniRef50_A5UD91 DNA-binding protein fis n=80 Tax=Gammaproteobact... 163 2e-39 UniRef50_C4LAF3 DNA-binding protein fis n=186 Tax=Gammaproteobac... 144 7e-34 UniRef50_A8G0V0 DNA-binding protein fis n=30 Tax=Gammaproteobact... 125 4e-28 UniRef50_Q15Z87 Helix-turn-helix, Fis-type n=6 Tax=Proteobacteri... 118 6e-26 UniRef50_Q9HUW0 Putative fis-like DNA-binding protein n=31 Tax=G... 100 1e-20 UniRef50_Q0VMY6 DNA-binding protein Fis n=5 Tax=Proteobacteria R... 100 2e-20 UniRef50_Q057I0 DNA-bending protein n=1 Tax=Buchnera aphidicola ... 100 2e-20 UniRef50_Q1QV70 DNA-binding protein Fis n=3 Tax=Gammaproteobacte... 97 2e-19 UniRef50_A8PNI1 Nitrogen assimilation regulatory protein n=1 Tax... 97 2e-19 UniRef50_A1WYK3 Transcriptional regulator, Fis family n=1 Tax=Ha... 96 5e-19 UniRef50_A0Z0J4 Factor for inversion stimulation Fis, transcript... 94 1e-18 UniRef50_Q1YVH9 DNA-binding protein Fis n=2 Tax=unclassified Gam... 93 2e-18 UniRef50_Q0AB23 Helix-turn-helix, Fis-type n=1 Tax=Alkalilimnico... 93 2e-18 UniRef50_Q1QA76 Helix-turn-helix, Fis-type n=18 Tax=Moraxellacea... 92 6e-18 UniRef50_Q2P860 DNA-binding protein n=5 Tax=Xanthomonadaceae Rep... 91 1e-17 UniRef50_Q3JC89 DNA-binding protein Fis n=2 Tax=Nitrosococcus oc... 91 1e-17 UniRef50_B7RVT1 Transcriptional regulator, Fis family protein n=... 91 1e-17 UniRef50_C0N365 Transcriptional regulator, Fis family protein n=... 90 2e-17 UniRef50_C7R7C1 Transcriptional regulator, Fis family n=1 Tax=Ka... 89 6e-17 UniRef50_Q87D75 Putative fis-like DNA-binding protein n=14 Tax=X... 88 1e-16 UniRef50_A4A6T5 DNA-binding protein fis n=2 Tax=unclassified Gam... 86 3e-16 UniRef50_Q5ZY31 DNA binding protein Fis n=6 Tax=Legionella RepID... 86 4e-16 UniRef50_A5WFX3 Transcriptional regulator, Fis family n=3 Tax=Pr... 86 5e-16 UniRef50_B8KW02 Transcriptional regulator, Fis family protein n=... 85 6e-16 UniRef50_B9ZKT5 Transcriptional regulator, Fis family n=2 Tax=Pr... 85 8e-16 UniRef50_A9KGN0 DNA-binding protein fis n=5 Tax=Coxiella burneti... 85 8e-16 UniRef50_B8GUU9 Factor for inversion stimulation Fis transcripti... 84 9e-16 UniRef50_B5JYA4 Transcriptional regulator, Fis family protein n=... 83 3e-15 UniRef50_A4BSG3 Helix-turn-helix, Fis-type n=1 Tax=Nitrococcus m... 82 5e-15 UniRef50_C5S9C5 Transcriptional regulator, Fis family n=1 Tax=Al... 80 3e-14 UniRef50_Q607L3 DNA-binding protein Fis n=1 Tax=Methylococcus ca... 79 5e-14 UniRef50_A5IBL2 DNA-binding protein fis n=6 Tax=Legionella RepID... 75 8e-13 UniRef50_C8PZT0 DNA-binding protein for site-specific recombinat... 75 9e-13 UniRef50_P64130 Putative fis-like DNA-binding protein n=12 Tax=B... 74 2e-12 UniRef50_C1HVR1 Factor-for-inversion-stimulation protein n=13 Ta... 72 4e-12 UniRef50_Q2YCT0 DNA-binding protein Fis n=6 Tax=Betaproteobacter... 72 4e-12 UniRef50_Q8Y231 Putative fis-like DNA-binding protein n=10 Tax=B... 72 4e-12 UniRef50_A6SUQ0 Transcriptional regulator, Fis family n=59 Tax=B... 72 5e-12 UniRef50_Q31II7 DNA-binding protein Fis n=2 Tax=Proteobacteria R... 72 6e-12 UniRef50_C5V629 Transcriptional regulator, Fis family n=2 Tax=Be... 71 9e-12 UniRef50_D0L1E4 Transcriptional regulator, Fis family n=1 Tax=Ha... 71 1e-11 UniRef50_A5ICP8 Fis transcriptional activator n=6 Tax=Legionella... 70 1e-11 UniRef50_C7RNK7 Transcriptional regulator, Fis family n=2 Tax=Be... 69 4e-11 UniRef50_A9I8G0 DNA-binding protein fis n=8 Tax=Betaproteobacter... 69 5e-11 UniRef50_Q475R3 DNA-binding protein Fis n=15 Tax=Betaproteobacte... 65 5e-10 UniRef50_B5ELA9 Transcriptional regulator, Fis family n=3 Tax=Ac... 63 4e-09 UniRef50_A0LDW4 Nitrogen metabolism transcriptional regulator, N... 62 6e-09 UniRef50_Q5FTP8 Nitrogen assimilation regulatory protein NtrC n=... 60 2e-08 UniRef50_A1B9J9 Two component, sigma54 specific, transcriptional... 59 4e-08 UniRef50_A1AXL9 Helix-turn-helix, Fis-type n=3 Tax=Bacteria RepI... 59 4e-08 UniRef50_Q0FAI5 Response regulator containing CheY-like receiver... 59 5e-08 UniRef50_C8N8F3 DNA-binding protein Fis n=1 Tax=Cardiobacterium ... 59 6e-08 UniRef50_Q6MRN6 Site-specific DNA inversion stimulation factor n... 57 1e-07 UniRef50_A8DVY9 Predicted protein (Fragment) n=1 Tax=Nematostell... 57 1e-07 UniRef50_Q04848 Nitrogen assimilation regulatory protein ntrC n=... 57 2e-07 UniRef50_P09432 Nitrogen regulation protein ntrC n=20 Tax=Rhodob... 57 3e-07 UniRef50_Q0F179 Putative transcriptional regulator, Fis family p... 56 3e-07 UniRef50_C5TGC5 Transcriptional regulator, Fis family n=2 Tax=Zy... 54 1e-06 UniRef50_A1ATK4 Two component, sigma54 specific, transcriptional... 54 1e-06 UniRef50_D2LEK1 Sigma54 specific transcriptional regulator, Fis ... 54 2e-06 UniRef50_A3ZS60 Nitrogen assimilation regulatory protein n=1 Tax... 53 3e-06 UniRef50_D0CFR6 Predicted protein n=1 Tax=Acinetobacter baumanni... 53 4e-06 UniRef50_B5YK68 Transcriptional regulator n=1 Tax=Thermodesulfov... 53 4e-06 UniRef50_Q7UJV2 Nitrogen regulation protein NR(I) n=1 Tax=Rhodop... 52 7e-06 UniRef50_C0QUD7 Nitrogen assimilation regulatory protein n=1 Tax... 51 1e-05 UniRef50_A7HH93 Transcriptional regulator, Fis family n=4 Tax=An... 51 1e-05 UniRef50_Q1GGX2 Two component, sigma54 specific, transcriptional... 50 2e-05 UniRef50_D2R2G6 Sigma54 specific transcriptional regulator, Fis ... 50 3e-05 UniRef50_UPI00016C4268 cetoacetate metabolism regulatory protein... 49 6e-05 UniRef50_D2R311 Two component, sigma54 specific, transcriptional... 49 6e-05 UniRef50_Q2G705 Two component, sigma54 specific, transcriptional... 49 7e-05 UniRef50_D2R4P1 Two component, sigma54 specific, transcriptional... 49 7e-05 UniRef50_B4UAL8 Two component, sigma54 specific, transcriptional... 48 8e-05 UniRef50_D2U436 Two-component system, NtrC family, nitrogen regu... 48 1e-04 UniRef50_A3ZZY0 Nitrogen assimilation regulatory protein n=1 Tax... 47 2e-04 UniRef50_A7MUF9 Putative uncharacterized protein n=4 Tax=Vibrion... 47 2e-04 UniRef50_Q0C0N3 Nitrogen regulation protein NR(I) n=1 Tax=Hyphom... 47 2e-04 UniRef50_D2MHT4 Two component, sigma54 specific, transcriptional... 47 2e-04 UniRef50_C1ZHW1 Response regulator with CheY-like receiver, AAA-... 46 4e-04 UniRef50_Q1ITP4 Two component, sigma54 specific, transcriptional... 46 4e-04 UniRef50_C6BW44 Two component, sigma54 specific, transcriptional... 45 9e-04 UniRef50_B9XL82 Two component, sigma54 specific, transcriptional... 45 0.001 UniRef50_C4XRA9 Transcriptional regulatory protein ZraR n=9 Tax=... 44 0.002 UniRef50_UPI00016C44AF cetoacetate metabolism regulatory protein... 44 0.002 UniRef50_A9CI57 Transcriptional regulator n=6 Tax=Rhizobiaceae R... 44 0.002 UniRef50_B5JH96 Sigma-54 interaction domain family n=1 Tax=Verru... 44 0.002 UniRef50_UPI00016C50F5 nitrogen regulation protein NR(I) n=1 Tax... 44 0.002 UniRef50_B4CX09 Sigma54 specific transcriptional regulator, Fis ... 44 0.002 UniRef50_A6UCY3 Two component, sigma54 specific, transcriptional... 43 0.002 UniRef50_C3WC23 Nitrogen assimilation regulatory protein n=5 Tax... 43 0.002 UniRef50_C1ZBV1 Response regulator with CheY-like receiver, AAA-... 43 0.004 UniRef50_A6C862 Nitrogen regulation protein NR(I) n=2 Tax=Planct... 42 0.004 UniRef50_A5L901 Putative uncharacterized protein n=1 Tax=Vibrion... 42 0.005 UniRef50_C3WJS3 Nitrogen assimilation regulatory protein n=9 Tax... 42 0.005 UniRef50_C1SGC3 Response regulator with CheY-like receiver, AAA-... 42 0.005 UniRef50_B0SC18 Transcriptional regulator n=7 Tax=Bacteria RepID... 42 0.005 UniRef50_A5GBB3 Two component, sigma-54 specific, transcriptiona... 42 0.005 UniRef50_Q1D5E1 Sigma-54 dependent transcriptional regulator, Fi... 42 0.007 UniRef50_D0MKJ7 Sigma54 specific transcriptional regulator, Fis ... 42 0.007 UniRef50_A9FB29 Sigma-54 dependent DNA-binding response regulato... 42 0.007 UniRef50_C7LP79 Two component, sigma54 specific, transcriptional... 42 0.007 UniRef50_A5D511 Transcriptional regulator n=1 Tax=Pelotomaculum ... 42 0.007 UniRef50_A6G018 Two component, sigma54 specific, transcriptional... 42 0.007 UniRef50_C5BCG1 Sigma54 specific transcriptional regulator, Fis ... 42 0.008 UniRef50_C6HWP3 Sigma54 specific transcriptional regulator, Fis ... 42 0.008 UniRef50_B8DQ12 PAS modulated sigma54 specific transcriptional r... 42 0.008 UniRef50_C0CQX1 Putative uncharacterized protein n=1 Tax=Blautia... 42 0.009 UniRef50_Q2LXW1 Sigma-54 dependent transcription regulator n=1 T... 41 0.009 UniRef50_Q1K1J7 Response regulator receiver protein n=1 Tax=Desu... 41 0.010 UniRef50_A6CEU3 Acetoacetate metabolism regulatory protein atoC ... 41 0.011 UniRef50_A3PJU4 GAF modulated sigma54 specific transcriptional r... 41 0.012 UniRef50_Q1IVS2 Sigma54 specific transcriptional regulator, Fis ... 41 0.012 UniRef50_B9JZ35 Transcriptional regulator n=2 Tax=Alphaproteobac... 41 0.013 UniRef50_D2MCQ1 Transcriptional regulator PpsR, Fis family n=1 T... 41 0.013 UniRef50_B9M1N5 Two component, sigma54 specific, transcriptional... 41 0.014 UniRef50_D0LIH3 Two component, sigma54 specific, transcriptional... 41 0.015 UniRef50_Q8ABU5 RteB, two-component system response regulator n=... 40 0.016 UniRef50_A7MUS2 Putative uncharacterized protein n=2 Tax=Vibrion... 40 0.016 UniRef50_A9GFC9 Sigma-54 dependent DNA-binding response regulato... 40 0.016 UniRef50_C1ZLR0 Response regulator with CheY-like receiver, AAA-... 40 0.016 UniRef50_C6BWX2 Two component, sigma54 specific, transcriptional... 40 0.017 UniRef50_Q1D245 Sigma-54 dependent DNA-binding response regulato... 40 0.017 UniRef50_Q1Q0T6 Strongly similar to sigma 54 response regulator ... 40 0.017 UniRef50_Q2TJQ8 PpsR2 n=1 Tax=Thiocapsa roseopersicina RepID=Q2T... 40 0.018 UniRef50_B5EFV3 Two component, sigma54 specific, transcriptional... 40 0.018 UniRef50_B2T4G6 Sigma54 specific transcriptional regulator, Fis ... 40 0.018 UniRef50_B9M8I4 Two component, sigma54 specific, transcriptional... 40 0.022 UniRef50_A6G1D1 Response regulator receiver domain protein (CheY... 40 0.023 UniRef50_B9JLC5 Transcriptional regulator protein n=8 Tax=Alphap... 40 0.024 UniRef50_D2R5F6 PAS modulated sigma54 specific transcriptional r... 40 0.024 UniRef50_P17899 Transcriptional regulatory protein flbD n=24 Tax... 40 0.025 UniRef50_A6GK43 Transcriptional regulator, NifA subfamily, Fis F... 40 0.026 UniRef50_A0LND9 Two component, sigma54 specific, transcriptional... 40 0.027 UniRef50_Q01VW0 Transcriptional regulator, Fis family n=1 Tax=Ca... 40 0.027 UniRef50_Q02BY0 Sigma54 specific transcriptional regulator, Fis ... 40 0.027 UniRef50_C0ZHT6 Probable transcriptional regulator n=1 Tax=Brevi... 40 0.028 UniRef50_C1A4S9 Fis family transcriptional regulator n=1 Tax=Gem... 40 0.028 UniRef50_C8R333 Two component, sigma54 specific, transcriptional... 40 0.028 UniRef50_Q06065 Acetoacetate metabolism regulatory protein atoC ... 40 0.030 UniRef50_B8DQ72 Two component, sigma54 specific, transcriptional... 40 0.030 UniRef50_B3E4E8 Putative sigma54 specific transcriptional regula... 40 0.031 UniRef50_C6IXE0 Transcriptional regulator n=1 Tax=Paenibacillus ... 40 0.031 UniRef50_A3EPR9 Putative two component, sigma54 specific, transc... 40 0.033 UniRef50_A6G1V7 Sigma-54 dependent transcriptional regulator, Fi... 40 0.034 UniRef50_Q46PB6 Helix-turn-helix, Fis-type n=7 Tax=Burkholderiac... 39 0.035 UniRef50_B8FXH0 PAS modulated sigma54 specific transcriptional r... 39 0.035 UniRef50_Q1INE5 Two component, sigma54 specific, transcriptional... 39 0.039 UniRef50_A4ITB8 Sigma-L-dependent transcriptional regulator n=1 ... 39 0.040 UniRef50_A5CY60 Transcriptional activator of acetoin/glycerol me... 39 0.042 UniRef50_Q1PXP1 Strongly similar to sigma 54 response regulator ... 39 0.049 UniRef50_C1SGB7 Response regulator with CheY-like receiver, AAA-... 39 0.049 UniRef50_Q1ZH58 Putative regulatory protein n=2 Tax=Gammaproteob... 39 0.051 UniRef50_A4IPF8 Transcriptional regulator n=6 Tax=Bacillales Rep... 39 0.054 UniRef50_Q6MI14 Conserved two-component system, regulatory prote... 39 0.054 UniRef50_Q1D6H5 Sigma-54 dependent DNA-binding response regulato... 39 0.055 UniRef50_Q6MHX6 Transcriptional regulatory protein flbD n=1 Tax=... 39 0.056 UniRef50_B8KX17 Two component, sigma54 specific, transcriptional... 39 0.058 UniRef50_B8FEL6 PAS modulated sigma54 specific transcriptional r... 39 0.061 UniRef50_Q1NWA6 Response regulator receiver n=2 Tax=Deltaproteob... 39 0.067 UniRef50_A8V246 Two component, sigma54 specific, transcriptional... 39 0.068 UniRef50_D0LYF6 Two component, sigma54 specific, transcriptional... 39 0.069 UniRef50_A4EB89 Putative uncharacterized protein n=1 Tax=Collins... 39 0.073 UniRef50_B9XDL8 Two component, sigma54 specific, transcriptional... 39 0.075 UniRef50_UPI0001698811 sigma-54-dependent transcriptional regula... 38 0.078 UniRef50_B8DQD3 Two component, sigma54 specific, transcriptional... 38 0.078 UniRef50_B3Q7B9 Transcriptional regulator, Fis family n=9 Tax=Br... 38 0.080 UniRef50_C1A9W9 NtrC family two-component response regulator n=1... 38 0.082 UniRef50_A8RXK4 Putative uncharacterized protein n=1 Tax=Clostri... 38 0.082 UniRef50_Q8RE11 Acetoacetate metabolism regulatory protein atoC ... 38 0.086 UniRef50_A6QAS7 Transcriptional regulator, Fis family n=1 Tax=Su... 38 0.090 UniRef50_A4J6T1 Two component, sigma54 specific, transcriptional... 38 0.091 UniRef50_B5JI58 Sigma-54 interaction domain family n=1 Tax=Verru... 38 0.096 UniRef50_P0AFB9 Nitrogen regulation protein NR(I) n=502 Tax=Bact... 38 0.096 >UniRef50_D2U2K4 tRNA-dihydrouridine synthase B n=1 Tax=Arsenophonus nasoniae RepID=D2U2K4_9ENTR Length = 458 Score = 188 bits (478), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 90/98 (91%), Positives = 95/98 (96%) Query: 1 MFEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQ 60 MFEQR NSDVLTV+T+NSQDQ+TQKPLRDSVKQALKNYFAQLN QDVNDLYELVLAEVE+ Sbjct: 361 MFEQRGNSDVLTVATINSQDQITQKPLRDSVKQALKNYFAQLNNQDVNDLYELVLAEVEK 420 Query: 61 PLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 PLLDMVMQYTRGNQTRAALM+ INRGTLRKKLKKYGMN Sbjct: 421 PLLDMVMQYTRGNQTRAALMLSINRGTLRKKLKKYGMN 458 >UniRef50_A5UD91 DNA-binding protein fis n=80 Tax=Gammaproteobacteria RepID=FIS_HAEIE Length = 99 Score = 163 bits (412), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 80/98 (81%), Positives = 88/98 (89%), Gaps = 1/98 (1%) Query: 1 MFEQRVNS-DVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVE 59 M EQ+ NS D LTVS +N+Q QVT KPLRDSVKQAL+NY AQL+GQDVNDLYELVLAEVE Sbjct: 1 MLEQQRNSADALTVSVLNAQSQVTSKPLRDSVKQALRNYLAQLDGQDVNDLYELVLAEVE 60 Query: 60 QPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 P+LDM+MQYTRGNQTRAA M+GINRGTLRKKLKKYGM Sbjct: 61 HPMLDMIMQYTRGNQTRAANMLGINRGTLRKKLKKYGM 98 >UniRef50_C4LAF3 DNA-binding protein fis n=186 Tax=Gammaproteobacteria RepID=FIS_TOLAT Length = 99 Score = 144 bits (364), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 67/99 (67%), Positives = 84/99 (84%), Gaps = 1/99 (1%) Query: 1 MFEQRVNSDVLTVSTVNSQ-DQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVE 59 M +Q + S+ L + ++Q Q Q+PLRDSV+QAL+NY AQLNGQDV +LY++VL+EVE Sbjct: 1 MLDQTLTSEALVTTVTHAQTHQPVQRPLRDSVQQALRNYLAQLNGQDVAELYDMVLSEVE 60 Query: 60 QPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 P+LD++MQYTRGNQTRAA+MMGINRGTLRKKLKKYGMN Sbjct: 61 APMLDIIMQYTRGNQTRAAIMMGINRGTLRKKLKKYGMN 99 >UniRef50_A8G0V0 DNA-binding protein fis n=30 Tax=Gammaproteobacteria RepID=FIS_SHESH Length = 101 Score = 125 bits (315), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 62/102 (60%), Positives = 83/102 (81%), Gaps = 5/102 (4%) Query: 1 MFEQRVNSDV--LTVSTVNSQDQVTQKP--LRDSVKQALKNYFAQLNGQDVNDLYELVLA 56 MF+Q N++ LTV + + + T KP LRD+VK+A+ N+FAQ++GQ+ ++YE+VL+ Sbjct: 1 MFDQTTNTETHQLTVGKIETANG-TIKPQLLRDAVKRAVTNFFAQMDGQEAEEVYEMVLS 59 Query: 57 EVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 EVE PLLD++MQ+TRGNQTRAA M+GINRGTLRKKLKKYGMN Sbjct: 60 EVEAPLLDIIMQHTRGNQTRAANMLGINRGTLRKKLKKYGMN 101 >UniRef50_Q15Z87 Helix-turn-helix, Fis-type n=6 Tax=Proteobacteria RepID=Q15Z87_PSEA6 Length = 97 Score = 118 bits (296), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 63/98 (64%), Positives = 76/98 (77%), Gaps = 1/98 (1%) Query: 1 MFEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQ 60 MFEQ V S T T SQ Q QKPLRDSVKQA+ Y QL+ D+ +LYELV+AEVE Sbjct: 1 MFEQNVTSPFTTTVTTPSQTQA-QKPLRDSVKQAVNKYLKQLDNTDIENLYELVMAEVEA 59 Query: 61 PLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 P+L+ +M +TRGNQTRA++M+GINRGTLRKKLK+YGMN Sbjct: 60 PMLEEIMTFTRGNQTRASIMLGINRGTLRKKLKQYGMN 97 >UniRef50_Q9HUW0 Putative fis-like DNA-binding protein n=31 Tax=Gammaproteobacteria RepID=FISL_PSEAE Length = 104 Score = 100 bits (249), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 44/71 (61%), Positives = 58/71 (81%) Query: 27 LRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRG 86 LRDSV++AL NYFA L GQ V D+Y +VL EVE PLL+ VM + +GNQT+A+ ++G+NRG Sbjct: 33 LRDSVEKALHNYFAHLEGQPVTDVYNMVLCEVEAPLLETVMNHVKGNQTKASELLGLNRG 92 Query: 87 TLRKKLKKYGM 97 TLRKKLK+Y + Sbjct: 93 TLRKKLKQYDL 103 >UniRef50_Q0VMY6 DNA-binding protein Fis n=5 Tax=Proteobacteria RepID=Q0VMY6_ALCBS Length = 110 Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 44/75 (58%), Positives = 64/75 (85%) Query: 23 TQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMG 82 T LR+ V+++L +YF QL+G+ V++LY +VLAE+E PLL+ V++YTRGNQT+AA ++G Sbjct: 35 THDTLRNCVRRSLNDYFNQLDGEAVSELYPMVLAEMEIPLLEKVLEYTRGNQTKAAELLG 94 Query: 83 INRGTLRKKLKKYGM 97 +NRGTLRKKLK+YG+ Sbjct: 95 LNRGTLRKKLKQYGL 109 >UniRef50_Q057I0 DNA-bending protein n=1 Tax=Buchnera aphidicola str. Cc (Cinara cedri) RepID=Q057I0_BUCCC Length = 108 Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 49/98 (50%), Positives = 71/98 (72%), Gaps = 1/98 (1%) Query: 1 MFEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQ 60 MF++ N+ VS + +Q++ L D VK ALKNYF +L ++ N+LY++ L+++E+ Sbjct: 1 MFKKNKNNSQFIVSKIINQEKFAF-SLEDCVKLALKNYFFKLIDKNENNLYKIFLSKIEK 59 Query: 61 PLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 PL D VMQ+TRGNQT+AA+++GINRGTLRKKL Y N Sbjct: 60 PLFDSVMQFTRGNQTQAAIILGINRGTLRKKLNIYYKN 97 >UniRef50_Q1QV70 DNA-binding protein Fis n=3 Tax=Gammaproteobacteria RepID=Q1QV70_CHRSD Length = 99 Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 45/72 (62%), Positives = 58/72 (80%) Query: 24 QKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGI 83 Q+ LR+SV+ A++ YF L+G+ V DLY +VL EVE PLL+ VM+Y GNQTRAA M+G+ Sbjct: 25 QQTLRESVELAMQRYFGHLDGETVTDLYAMVLTEVEVPLLEAVMRYADGNQTRAADMLGL 84 Query: 84 NRGTLRKKLKKY 95 NRGTLRKKLK+Y Sbjct: 85 NRGTLRKKLKQY 96 >UniRef50_A8PNI1 Nitrogen assimilation regulatory protein n=1 Tax=Rickettsiella grylli RepID=A8PNI1_9COXI Length = 96 Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 45/71 (63%), Positives = 62/71 (87%) Query: 24 QKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGI 83 Q+PL+ V+QAL+NYF+QL+G ++LY LVLAEVE PLL++V++ TRGNQT+AA ++GI Sbjct: 22 QQPLKTYVEQALENYFSQLDGNSPSNLYGLVLAEVESPLLEVVLRQTRGNQTKAAKLLGI 81 Query: 84 NRGTLRKKLKK 94 +RGTLRKKLK+ Sbjct: 82 SRGTLRKKLKQ 92 >UniRef50_A1WYK3 Transcriptional regulator, Fis family n=1 Tax=Halorhodospira halophila SL1 RepID=A1WYK3_HALHL Length = 98 Score = 95.5 bits (236), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 42/73 (57%), Positives = 58/73 (79%) Query: 26 PLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINR 85 P+R++V +AL +YF +L+G D N LY LVL EVE PLL+ VM Y GNQTRAA ++G+NR Sbjct: 24 PIREAVTRALDDYFRELDGHDCNGLYRLVLNEVEVPLLESVMDYCSGNQTRAAQLLGLNR 83 Query: 86 GTLRKKLKKYGMN 98 TLRKKL+++G++ Sbjct: 84 ATLRKKLREHGID 96 >UniRef50_A0Z0J4 Factor for inversion stimulation Fis, transcriptional activator n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z0J4_9GAMM Length = 84 Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 40/79 (50%), Positives = 61/79 (77%) Query: 19 QDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAA 78 ++ V +PLR+S K+++ ++F QL+G DL+ LVLA+VE+PL VMQ T GNQ++AA Sbjct: 5 KNPVQPRPLRESAKESITHFFEQLDGATCTDLHALVLAQVEEPLFRAVMQETCGNQSKAA 64 Query: 79 LMMGINRGTLRKKLKKYGM 97 ++G+NRGTLRKKL++Y + Sbjct: 65 AILGLNRGTLRKKLRQYHL 83 >UniRef50_Q1YVH9 DNA-binding protein Fis n=2 Tax=unclassified Gammaproteobacteria RepID=Q1YVH9_9GAMM Length = 93 Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 43/74 (58%), Positives = 59/74 (79%) Query: 24 QKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGI 83 Q+ L+ SV +A++ YF+ L+GQ +DLY++V+AEVE PLL VM YTR NQ+RAA +G+ Sbjct: 19 QQSLQQSVTEAMQRYFSDLDGQATHDLYDIVMAEVEPPLLKAVMAYTRQNQSRAAETLGL 78 Query: 84 NRGTLRKKLKKYGM 97 NRGTLRKKLK+Y + Sbjct: 79 NRGTLRKKLKQYDL 92 >UniRef50_Q0AB23 Helix-turn-helix, Fis-type n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0AB23_ALHEH Length = 95 Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 43/84 (51%), Positives = 57/84 (67%) Query: 12 TVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTR 71 T S+ + PLR++V +AL YF QLNG D L++LV+ EVE PL+ M Y Sbjct: 10 TNSSTGAHGNSAIAPLREAVSEALGQYFQQLNGHDCYGLHQLVMREVEVPLIQAAMDYAD 69 Query: 72 GNQTRAALMMGINRGTLRKKLKKY 95 GNQTRAA ++GINRGTLR+KL++Y Sbjct: 70 GNQTRAAQLLGINRGTLRRKLREY 93 >UniRef50_Q1QA76 Helix-turn-helix, Fis-type n=18 Tax=Moraxellaceae RepID=Q1QA76_PSYCK Length = 118 Score = 91.7 bits (226), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 42/96 (43%), Positives = 64/96 (66%) Query: 2 FEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQP 61 +E+ + + V + +PLR V++ ++ YFA L + DLYEL+L E+EQP Sbjct: 22 YEEDYHRSIRNVESALDDTGHAHEPLRIHVERVVRQYFAMLGDEIPTDLYELILKEIEQP 81 Query: 62 LLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 LL +V++ +RGNQT+ A ++G+NRGTLRKKLK YG+ Sbjct: 82 LLSVVLEKSRGNQTKCAQILGLNRGTLRKKLKIYGL 117 >UniRef50_Q2P860 DNA-binding protein n=5 Tax=Xanthomonadaceae RepID=Q2P860_XANOM Length = 90 Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 41/84 (48%), Positives = 58/84 (69%) Query: 14 STVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGN 73 S +S + PLR+ V Q+++ Y L+G D +D+YE+VL E+E PL V+ + GN Sbjct: 6 SRPDSSRGAPKSPLREHVAQSVRRYLRDLDGSDADDVYEIVLREMEIPLFVEVLNHCEGN 65 Query: 74 QTRAALMMGINRGTLRKKLKKYGM 97 Q+RAA M+GI+R TLRKKLK+YGM Sbjct: 66 QSRAAAMLGIHRATLRKKLKEYGM 89 >UniRef50_Q3JC89 DNA-binding protein Fis n=2 Tax=Nitrosococcus oceani RepID=Q3JC89_NITOC Length = 108 Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 40/84 (47%), Positives = 61/84 (72%), Gaps = 2/84 (2%) Query: 15 TVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQ 74 T+N + + P+ + ++QAL YF +LNG D DLYE+V+ E+E PLL +++T GNQ Sbjct: 24 TINEEQR--NSPISECLRQALDEYFDRLNGHDPADLYEIVMKEIEPPLLQTTLKHTGGNQ 81 Query: 75 TRAALMMGINRGTLRKKLKKYGMN 98 T+AA +G+NR TLRKKL++YG++ Sbjct: 82 TKAAKFLGMNRSTLRKKLRQYGIS 105 >UniRef50_B7RVT1 Transcriptional regulator, Fis family protein n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RVT1_9GAMM Length = 105 Score = 90.5 bits (223), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 39/69 (56%), Positives = 58/69 (84%) Query: 27 LRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRG 86 LR++V +++ Y A+L+GQ D+Y++VLAE+E PLL+ +M YTR NQT+A++M+G+NRG Sbjct: 30 LRNAVTASVRKYLAELDGQLSTDVYQMVLAEMEAPLLEEIMAYTRNNQTKASIMLGLNRG 89 Query: 87 TLRKKLKKY 95 TLRKKLK+Y Sbjct: 90 TLRKKLKQY 98 >UniRef50_C0N365 Transcriptional regulator, Fis family protein n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N365_9GAMM Length = 96 Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 42/89 (47%), Positives = 58/89 (65%) Query: 9 DVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQ 68 D T + + + + PL D V AL +YF QL G +LY +++ EVE PLL + Sbjct: 8 DESTCAELGVAAERSTAPLSDCVSNALSDYFQQLEGHPAANLYNMLMNEVEVPLLKATLD 67 Query: 69 YTRGNQTRAALMMGINRGTLRKKLKKYGM 97 +T GNQ+RAA ++GINRGTLRKKLK+YG+ Sbjct: 68 HTAGNQSRAAEILGINRGTLRKKLKQYGL 96 >UniRef50_C7R7C1 Transcriptional regulator, Fis family n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7R7C1_KANKD Length = 101 Score = 88.6 bits (218), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 38/71 (53%), Positives = 58/71 (81%) Query: 27 LRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRG 86 LR+ V +++NY Q++GQ ++++Y+LVL +VE+PLL +M YTR NQT+AA ++G+NRG Sbjct: 30 LREHVAMSMQNYLKQMHGQPLSEVYDLVLTQVEEPLLRAIMDYTRNNQTKAAQVLGLNRG 89 Query: 87 TLRKKLKKYGM 97 TLRKKLK+Y + Sbjct: 90 TLRKKLKRYNL 100 >UniRef50_Q87D75 Putative fis-like DNA-binding protein n=14 Tax=Xanthomonadaceae RepID=FISL_XYLFT Length = 90 Score = 87.8 bits (216), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 42/89 (47%), Positives = 62/89 (69%), Gaps = 4/89 (4%) Query: 13 VSTVNSQDQVT----QKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQ 68 ++ V S+ +V+ + PLR+ V Q ++ Y L+G D NDLY +VL E+E PLL V+ Sbjct: 1 MNVVPSRPEVSRGSPKSPLREHVAQVVRRYLRDLDGCDANDLYNMVLREMEIPLLVEVLN 60 Query: 69 YTRGNQTRAALMMGINRGTLRKKLKKYGM 97 + GNQ+RAA ++GI+R TLRKKLK+YG+ Sbjct: 61 HCEGNQSRAAALLGIHRATLRKKLKEYGL 89 >UniRef50_A4A6T5 DNA-binding protein fis n=2 Tax=unclassified Gammaproteobacteria RepID=A4A6T5_9GAMM Length = 119 Score = 86.3 bits (212), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 39/81 (48%), Positives = 58/81 (71%) Query: 18 SQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRA 77 + + T LR++V ++ Y +++G+ D Y LVL+EVE PLL VM+YTR NQ+RA Sbjct: 33 TSEAATVASLREAVDLFVRRYLDEMDGEMSTDFYNLVLSEVEAPLLKAVMEYTRQNQSRA 92 Query: 78 ALMMGINRGTLRKKLKKYGMN 98 + M+G+NRGTLRKKLK+Y ++ Sbjct: 93 SAMLGLNRGTLRKKLKQYAID 113 >UniRef50_Q5ZY31 DNA binding protein Fis n=6 Tax=Legionella RepID=Q5ZY31_LEGPH Length = 93 Score = 85.9 bits (211), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 38/83 (45%), Positives = 60/83 (72%) Query: 13 VSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRG 72 ++T+++ T L +SV Q+++ YF++L G D DLY+ VL E+E PL VM++ + Sbjct: 1 MTTISNDAGDTTASLAESVTQSVQKYFSELKGTDPVDLYQFVLEEIETPLFRAVMEHCKY 60 Query: 73 NQTRAALMMGINRGTLRKKLKKY 95 NQ+RAA+M+GI+RGTLR KL++Y Sbjct: 61 NQSRAAIMLGISRGTLRTKLRRY 83 >UniRef50_A5WFX3 Transcriptional regulator, Fis family n=3 Tax=Proteobacteria RepID=A5WFX3_PSYWF Length = 113 Score = 85.5 bits (210), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 37/80 (46%), Positives = 60/80 (75%) Query: 16 VNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQT 75 V+S + PLR V+QA++ YF +L G+ +LY+ +L EVE+PLL +V++ T+GNQ+ Sbjct: 31 VDSHAPQDRAPLRHHVQQAVEQYFVELEGESTTNLYQTILQEVEKPLLQVVLKQTQGNQS 90 Query: 76 RAALMMGINRGTLRKKLKKY 95 + A ++G+NRGTLRKK+++Y Sbjct: 91 KTAKILGLNRGTLRKKMQQY 110 >UniRef50_B8KW02 Transcriptional regulator, Fis family protein n=1 Tax=gamma proteobacterium NOR51-B RepID=B8KW02_9GAMM Length = 93 Score = 85.1 bits (209), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 38/70 (54%), Positives = 53/70 (75%) Query: 26 PLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINR 85 PLRDS ++A+K Y L+G+ D++ LV+A+VE+PLL VM Y NQ RAA M+G++R Sbjct: 11 PLRDSAQKAIKAYLETLDGEQPTDVFALVIAQVEEPLLAEVMAYVSNNQCRAAEMLGLSR 70 Query: 86 GTLRKKLKKY 95 GTLRKKL++Y Sbjct: 71 GTLRKKLRQY 80 >UniRef50_B9ZKT5 Transcriptional regulator, Fis family n=2 Tax=Proteobacteria RepID=B9ZKT5_9GAMM Length = 110 Score = 84.7 bits (208), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 38/71 (53%), Positives = 53/71 (74%) Query: 27 LRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRG 86 L +SV+ AL YF L+GQ +DLY LV+ EVE+PLL V++ GNQ+RAA ++G+NR Sbjct: 26 LAESVRNALDQYFETLDGQSSHDLYALVMNEVERPLLACVLERCNGNQSRAAALLGLNRA 85 Query: 87 TLRKKLKKYGM 97 TLRKKL+ +G+ Sbjct: 86 TLRKKLRAHGL 96 >UniRef50_A9KGN0 DNA-binding protein fis n=5 Tax=Coxiella burnetii RepID=A9KGN0_COXBN Length = 103 Score = 84.7 bits (208), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 39/76 (51%), Positives = 61/76 (80%) Query: 23 TQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMG 82 T + SV+Q+L++YFA+L+G+D +LY +VLAE+E PLL +VM+YT+ NQ++AA ++G Sbjct: 24 TGQSFASSVQQSLQSYFARLDGEDPVNLYSMVLAEMEVPLLRVVMRYTKNNQSKAAKILG 83 Query: 83 INRGTLRKKLKKYGMN 98 ++RGTLRKKL Y ++ Sbjct: 84 LSRGTLRKKLAIYQID 99 >UniRef50_B8GUU9 Factor for inversion stimulation Fis transcriptional activator-like protein n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GUU9_THISH Length = 86 Score = 84.3 bits (207), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 36/74 (48%), Positives = 59/74 (79%) Query: 25 KPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGIN 84 K L +V Q+L++YFA+L G + + L+ +V+ EVE+PLL+ V+++ GNQ++AA +G+N Sbjct: 11 KTLSLAVHQSLEDYFARLEGHEPDGLFRMVMEEVERPLLECVLRHCEGNQSKAAQYLGLN 70 Query: 85 RGTLRKKLKKYGMN 98 RGTLRKKLK++G++ Sbjct: 71 RGTLRKKLKQHGIS 84 >UniRef50_B5JYA4 Transcriptional regulator, Fis family protein n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JYA4_9GAMM Length = 77 Score = 82.8 bits (203), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 38/72 (52%), Positives = 52/72 (72%) Query: 26 PLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINR 85 PLR+SV+Q +K+Y LNG+ + +Y+LV+ EVE LL VM++ NQ+ AA +GINR Sbjct: 5 PLRNSVEQVMKDYLTALNGEKPHGMYKLVVGEVEAALLKCVMEHVDHNQSHAADCLGINR 64 Query: 86 GTLRKKLKKYGM 97 GTLRKKLK +G Sbjct: 65 GTLRKKLKDHGF 76 >UniRef50_A4BSG3 Helix-turn-helix, Fis-type n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BSG3_9GAMM Length = 100 Score = 82.0 bits (201), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 38/73 (52%), Positives = 52/73 (71%) Query: 26 PLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINR 85 P+R V++AL+ YF +L + + LY++VL EVE PLL VM+ GN T+AA M+GINR Sbjct: 27 PIRACVREALEGYFRRLEDCECSGLYKMVLTEVEIPLLQAVMRVCSGNLTKAAQMLGINR 86 Query: 86 GTLRKKLKKYGMN 98 TLRKKL+ YG+ Sbjct: 87 STLRKKLQYYGLE 99 >UniRef50_C5S9C5 Transcriptional regulator, Fis family n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5S9C5_CHRVI Length = 102 Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 32/79 (40%), Positives = 55/79 (69%) Query: 20 DQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAAL 79 D PL V+ A++ Y + G ++ DLY+LV+ EVE+PL ++V+ +T+GN ++AA Sbjct: 23 DHRHAAPLSQCVRAAVEAYLTNMAGHEIEDLYDLVMQEVERPLFELVLHHTQGNLSQAAR 82 Query: 80 MMGINRGTLRKKLKKYGMN 98 ++G+ R TLRK+LK +G++ Sbjct: 83 LLGLTRNTLRKRLKAHGID 101 >UniRef50_Q607L3 DNA-binding protein Fis n=1 Tax=Methylococcus capsulatus RepID=Q607L3_METCA Length = 96 Score = 79.0 bits (193), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 34/71 (47%), Positives = 54/71 (76%) Query: 27 LRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRG 86 L + V+ AL NY +QL+G V D+Y LV+ EVE+PL+ V+++ NQTRAA ++G++R Sbjct: 25 LSEQVRAALVNYLSQLDGISVTDMYTLVMGEVERPLIRTVLEHCCHNQTRAAQLLGLSRS 84 Query: 87 TLRKKLKKYGM 97 TLRKK++++G+ Sbjct: 85 TLRKKMQQHGI 95 >UniRef50_A5IBL2 DNA-binding protein fis n=6 Tax=Legionella RepID=A5IBL2_LEGPC Length = 98 Score = 74.7 bits (182), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 38/84 (45%), Positives = 58/84 (69%), Gaps = 2/84 (2%) Query: 12 TVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTR 71 T +T S Q ++ L+D V + + A+ + +NDLY+++L+EVE PLL VM+ R Sbjct: 6 TQATTQSTKQ--EQGLQDLVYSLVTRFLAENKSKSINDLYDMILSEVEPPLLQAVMEKRR 63 Query: 72 GNQTRAALMMGINRGTLRKKLKKY 95 GNQ +AA M+GI+RGT+RKKL++Y Sbjct: 64 GNQLQAAKMLGISRGTIRKKLQRY 87 >UniRef50_C8PZT0 DNA-binding protein for site-specific recombination, transcription of rRNA and tRNA operons and DNA replication n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PZT0_9GAMM Length = 109 Score = 74.7 bits (182), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 32/71 (45%), Positives = 51/71 (71%) Query: 27 LRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRG 86 L ++ ++ YF L Q LYEL+L++ E+PL+ +V+++TRGNQT+ A ++G+NRG Sbjct: 38 LAHHIELVVREYFDNLKEQQPTQLYELMLSQFEKPLISVVLEHTRGNQTKTAEILGLNRG 97 Query: 87 TLRKKLKKYGM 97 TLRKKLK + + Sbjct: 98 TLRKKLKTHQL 108 >UniRef50_P64130 Putative fis-like DNA-binding protein n=12 Tax=Betaproteobacteria RepID=FISL_NEIMA Length = 79 Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 32/71 (45%), Positives = 52/71 (73%) Query: 27 LRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRG 86 + ++Q L+ YF LNG + +Y++VL +VE+PLL VM+ GNQ++A++M+G+NR Sbjct: 8 ISQCIRQNLEQYFKDLNGTEPCGVYDMVLHQVEKPLLVCVMEQCGGNQSKASVMLGLNRN 67 Query: 87 TLRKKLKKYGM 97 TLRKKL ++G+ Sbjct: 68 TLRKKLIQHGL 78 >UniRef50_C1HVR1 Factor-for-inversion-stimulation protein n=13 Tax=Betaproteobacteria RepID=C1HVR1_NEIGO Length = 79 Score = 72.4 bits (176), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 32/68 (47%), Positives = 50/68 (73%) Query: 30 SVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLR 89 ++Q L YF LNG + +Y++VL +VE+PLL VM+ GNQ++A++M+G+NR TLR Sbjct: 11 CIEQNLNQYFKDLNGTEPCGVYDMVLHQVEKPLLVCVMEQCGGNQSKASVMLGLNRNTLR 70 Query: 90 KKLKKYGM 97 KKL ++G+ Sbjct: 71 KKLIQHGL 78 >UniRef50_Q2YCT0 DNA-binding protein Fis n=6 Tax=Betaproteobacteria RepID=Q2YCT0_NITMU Length = 80 Score = 72.4 bits (176), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 54/74 (72%) Query: 22 VTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMM 81 + + + V++ +++YF L+G+ + ++E+V+ VE+PL+++VM+ GNQTRAA ++ Sbjct: 4 INENDIARCVRKTVEDYFNDLDGEKPHAIHEMVIRSVEKPLIELVMERAGGNQTRAAELL 63 Query: 82 GINRGTLRKKLKKY 95 GINR TLR K+K+Y Sbjct: 64 GINRNTLRNKMKQY 77 >UniRef50_Q8Y231 Putative fis-like DNA-binding protein n=10 Tax=Betaproteobacteria RepID=FISL_RALSO Length = 77 Score = 72.4 bits (176), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 29/76 (38%), Positives = 56/76 (73%) Query: 22 VTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMM 81 +++ P+ ++ +L Y+ L+G++ +++Y++VL +E+PLL+ VM++ NQ+ AA + Sbjct: 1 MSRNPIERCIRDSLDTYYRDLDGENPSNVYDMVLQAIERPLLETVMEWASNNQSLAADYL 60 Query: 82 GINRGTLRKKLKKYGM 97 GINR TLRKKL+++G+ Sbjct: 61 GINRNTLRKKLQQHGL 76 >UniRef50_A6SUQ0 Transcriptional regulator, Fis family n=59 Tax=Betaproteobacteria RepID=A6SUQ0_JANMA Length = 126 Score = 72.4 bits (176), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 34/85 (40%), Positives = 59/85 (69%) Query: 13 VSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRG 72 + T N +++ +++ VK++L+ YF L Q +++YE+V+ VE+P+L+ VM+ G Sbjct: 41 IKTRNQPSTMSKDNIQEVVKKSLEKYFKDLGEQMPSNVYEMVVFTVEKPILEAVMERAEG 100 Query: 73 NQTRAALMMGINRGTLRKKLKKYGM 97 NQ+ AA M+GINR TLRKKL+++ + Sbjct: 101 NQSHAADMLGINRNTLRKKLQQHDL 125 >UniRef50_Q31II7 DNA-binding protein Fis n=2 Tax=Proteobacteria RepID=Q31II7_THICR Length = 87 Score = 71.6 bits (174), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 32/71 (45%), Positives = 51/71 (71%) Query: 27 LRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRG 86 L V LKNYF L G+ +D+Y++V+++VE+PL++ V+ T NQ+R+A ++GINR Sbjct: 14 LSTHVTMTLKNYFETLEGEVPSDVYQMVISQVERPLIEFVLNETAFNQSRSAEILGINRN 73 Query: 87 TLRKKLKKYGM 97 TLRKK++ Y + Sbjct: 74 TLRKKMQLYKI 84 >UniRef50_C5V629 Transcriptional regulator, Fis family n=2 Tax=Betaproteobacteria RepID=C5V629_9PROT Length = 81 Score = 71.2 bits (173), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 33/68 (48%), Positives = 52/68 (76%), Gaps = 1/68 (1%) Query: 31 VKQALKNYFAQLNGQDVN-DLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLR 89 V+QAL YF+ L+G++ D+Y++V+ VE+PL++MV+ GNQ+RA+ M+GINR TLR Sbjct: 13 VRQALSEYFSDLDGEEPGCDVYDMVMNCVEKPLVEMVLAQVGGNQSRASAMLGINRNTLR 72 Query: 90 KKLKKYGM 97 KK+ +G+ Sbjct: 73 KKMLLHGI 80 >UniRef50_D0L1E4 Transcriptional regulator, Fis family n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0L1E4_HALNC Length = 106 Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 33/81 (40%), Positives = 53/81 (65%) Query: 15 TVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQ 74 +N+ + P++ +V+ AL + L G ++LY+LV+A++E+PLL+ M NQ Sbjct: 19 CLNTDEAHGDNPVQQAVRAALDALWETLEGDQPSNLYDLVIAQIERPLLETAMMRCEQNQ 78 Query: 75 TRAALMMGINRGTLRKKLKKY 95 +RAA +GINR TLRKKLK++ Sbjct: 79 SRAAECLGINRSTLRKKLKQH 99 >UniRef50_A5ICP8 Fis transcriptional activator n=6 Tax=Legionella RepID=A5ICP8_LEGPC Length = 95 Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 37/78 (47%), Positives = 52/78 (66%), Gaps = 3/78 (3%) Query: 21 QVTQ--KPLRDSVKQALKNYFAQLNGQDVN-DLYELVLAEVEQPLLDMVMQYTRGNQTRA 77 QVTQ L V A+K Y + +D N +LY+L++ EVE PL VM+ TR NQ++A Sbjct: 7 QVTQGNDALSHQVISAVKGYLTSVGSKDANLNLYQLIVEEVEAPLFRTVMELTRYNQSKA 66 Query: 78 ALMMGINRGTLRKKLKKY 95 A ++G++RGTLR KLK+Y Sbjct: 67 ARVLGVSRGTLRTKLKRY 84 >UniRef50_C7RNK7 Transcriptional regulator, Fis family n=2 Tax=Betaproteobacteria RepID=C7RNK7_9PROT Length = 81 Score = 69.3 bits (168), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 32/63 (50%), Positives = 48/63 (76%) Query: 30 SVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLR 89 V +AL++YF L+G+ +YE+V+ VE+P+L++V++ RGNQT AA ++GINR TLR Sbjct: 12 CVGKALESYFETLDGEKPAAVYEMVIKMVERPMLEVVLKQARGNQTLAAEILGINRNTLR 71 Query: 90 KKL 92 KKL Sbjct: 72 KKL 74 >UniRef50_A9I8G0 DNA-binding protein fis n=8 Tax=Betaproteobacteria RepID=A9I8G0_BORPD Length = 79 Score = 68.6 bits (166), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 29/71 (40%), Positives = 51/71 (71%) Query: 27 LRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRG 86 L D V+ +L+ YF L + +D++++V+ VE+P+L++ +Q + GNQ+RA+ M+GI R Sbjct: 7 LEDCVRASLERYFEDLGESEPHDMWDMVMRCVERPVLEVALQRSGGNQSRASEMLGITRN 66 Query: 87 TLRKKLKKYGM 97 TLRKKL+ + + Sbjct: 67 TLRKKLQAHNI 77 >UniRef50_Q475R3 DNA-binding protein Fis n=15 Tax=Betaproteobacteria RepID=Q475R3_RALEJ Length = 77 Score = 65.5 bits (158), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 30/68 (44%), Positives = 48/68 (70%) Query: 30 SVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLR 89 ++ +L +YF L+G++ +++Y +VL VE+PLL+ VM NQ+ AA +GINR TLR Sbjct: 9 CIRDSLDSYFRDLDGEEPSNMYNMVLEAVERPLLEAVMVRAERNQSLAAAYLGINRNTLR 68 Query: 90 KKLKKYGM 97 KKL+ +G+ Sbjct: 69 KKLQLHGL 76 >UniRef50_B5ELA9 Transcriptional regulator, Fis family n=3 Tax=Acidithiobacillus RepID=B5ELA9_ACIF5 Length = 80 Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 31/76 (40%), Positives = 45/76 (59%) Query: 23 TQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMG 82 T L D V + Y A L G+ +L+ L++ EVE+ LL +Q+ G + AA +G Sbjct: 4 TNMSLGDCVIHVMDRYLADLGGEVPGNLHALIVEEVERALLAHTLQHCGGQRGMAAQWLG 63 Query: 83 INRGTLRKKLKKYGMN 98 INR TLRKKL+ YG++ Sbjct: 64 INRNTLRKKLQTYGLD 79 >UniRef50_A0LDW4 Nitrogen metabolism transcriptional regulator, NtrC, Fis Family n=3 Tax=Proteobacteria RepID=A0LDW4_MAGSM Length = 504 Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 47/66 (71%) Query: 33 QALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKL 92 Q L +FA + G + + +Y++VL ++E L+ V++ TRGN+ +AA ++GINR TLRKK+ Sbjct: 438 QDLDTFFATMGGLETSGVYDMVLRKMEAVLIPRVLRQTRGNRVKAAQILGINRNTLRKKM 497 Query: 93 KKYGMN 98 + GM+ Sbjct: 498 RDLGMD 503 >UniRef50_Q5FTP8 Nitrogen assimilation regulatory protein NtrC n=1 Tax=Gluconobacter oxydans RepID=Q5FTP8_GLUOX Length = 246 Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 31/93 (33%), Positives = 54/93 (58%), Gaps = 2/93 (2%) Query: 4 QRVNSDVLTVSTVNSQDQVTQKP--LRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQP 61 QR+ + ++ + T +P L ++++ L Y DL+ V+ EVE+P Sbjct: 143 QRLGPERISAVCRLAAGTGTARPRGLERALERPLAEYLEGDLENGAGDLHACVVGEVERP 202 Query: 62 LLDMVMQYTRGNQTRAALMMGINRGTLRKKLKK 94 L+ MV++ T GNQ RAA ++G+NR TLRK++++ Sbjct: 203 LITMVLRRTCGNQLRAAAILGVNRNTLRKRIRE 235 >UniRef50_A1B9J9 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Rhodobacteraceae RepID=A1B9J9_PARDP Length = 485 Score = 59.3 bits (142), Expect = 4e-08, Method: Composition-based stats. Identities = 33/68 (48%), Positives = 46/68 (67%), Gaps = 3/68 (4%) Query: 27 LRDSVKQALKNYFAQLNGQDVN--DLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGIN 84 L SV+ L+ YF L+G D+ LY+ +L E+E+PLL++ + T GNQ R A ++GIN Sbjct: 405 LAQSVEMHLQRYF-DLHGDDLPPPGLYDRILREIEKPLLEIALDATGGNQLRCADLLGIN 463 Query: 85 RGTLRKKL 92 R TLRKKL Sbjct: 464 RNTLRKKL 471 >UniRef50_A1AXL9 Helix-turn-helix, Fis-type n=3 Tax=Bacteria RepID=A1AXL9_RUTMC Length = 76 Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 47/71 (66%) Query: 27 LRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRG 86 L + LK YF QL+G+ + ++++++ VE ++ V+ + + NQ+ A+ ++ INRG Sbjct: 6 LPTCINAKLKRYFKQLDGEQASGVHKMIINNVESIVIKFVLDFVKNNQSEASRILSINRG 65 Query: 87 TLRKKLKKYGM 97 TL+KK+++Y + Sbjct: 66 TLKKKIQRYKL 76 >UniRef50_Q0FAI5 Response regulator containing CheY-like receiver n=8 Tax=Rhodobacterales RepID=Q0FAI5_9RHOB Length = 465 Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 53/84 (63%), Gaps = 4/84 (4%) Query: 13 VSTVNSQD-QVTQKPLRDSVKQALKNYFAQLNGQDVND--LYELVLAEVEQPLLDMVMQY 69 + ++NS D + L SV++ +K YF L+G+ + LY ++ E+E PL+ + + Sbjct: 370 IPSMNSDDLDTSNGKLSSSVERHIKRYF-DLHGETLPPPGLYNRIMKEIELPLIALSLSA 428 Query: 70 TRGNQTRAALMMGINRGTLRKKLK 93 TRGNQ + + ++GINR TLRKK+K Sbjct: 429 TRGNQIKTSELLGINRNTLRKKIK 452 >UniRef50_C8N8F3 DNA-binding protein Fis n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8N8F3_9GAMM Length = 85 Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 45/71 (63%), Gaps = 2/71 (2%) Query: 27 LRDSVKQALKNYFAQLNGQD--VNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGIN 84 +R +++ ++ Y+A D + LY+L+++E E ++ +MQ R NQ+ AA ++GI Sbjct: 6 IRAAIEHSIAEYYALHENHDERITGLYDLIISEAEHAIISHIMQRCRDNQSHAARILGIT 65 Query: 85 RGTLRKKLKKY 95 R TL+KKL ++ Sbjct: 66 RNTLKKKLTQH 76 >UniRef50_Q6MRN6 Site-specific DNA inversion stimulation factor n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MRN6_BDEBA Length = 99 Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 32/73 (43%), Positives = 45/73 (61%), Gaps = 2/73 (2%) Query: 27 LRDSVKQALKNYFAQLNGQDV--NDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGIN 84 L VK L+ FAQ V N LY +VL +VE+PLL++ ++ GNQ + A M+GIN Sbjct: 21 LEKLVKSKLEVLFAQQKEAQVELNGLYNVVLEQVEKPLLELALRAYNGNQVKTAQMLGIN 80 Query: 85 RGTLRKKLKKYGM 97 R TL+KK+ Y + Sbjct: 81 RNTLKKKIDNYKI 93 >UniRef50_A8DVY9 Predicted protein (Fragment) n=1 Tax=Nematostella vectensis RepID=A8DVY9_NEMVE Length = 368 Score = 57.4 bits (137), Expect = 1e-07, Method: Composition-based stats. Identities = 30/68 (44%), Positives = 43/68 (63%), Gaps = 1/68 (1%) Query: 27 LRDSVKQALKNYFAQL-NGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINR 85 L +V+ L ++F+ NG LY +L E+E PLL + TRGNQ RAA ++G+NR Sbjct: 88 LGGAVETYLSSHFSSFPNGVPPPGLYHRILREIEVPLLTAALAATRGNQIRAADLLGLNR 147 Query: 86 GTLRKKLK 93 TLRKK++ Sbjct: 148 NTLRKKIR 155 >UniRef50_Q04848 Nitrogen assimilation regulatory protein ntrC n=122 Tax=Alphaproteobacteria RepID=NTRC_AZOC5 Length = 480 Score = 57.4 bits (137), Expect = 2e-07, Method: Composition-based stats. Identities = 33/78 (42%), Positives = 48/78 (61%), Gaps = 3/78 (3%) Query: 18 SQDQVTQKPLRDSVKQALKNYFAQLNGQDVN--DLYELVLAEVEQPLLDMVMQYTRGNQT 75 S+D L SV++ L YF+ G+D+ LY +L +VE PLL + TRGNQ Sbjct: 393 SEDGPVDATLGASVERHLNGYFSGF-GEDLPPPGLYHRILRDVEYPLLSAALAATRGNQI 451 Query: 76 RAALMMGINRGTLRKKLK 93 +AA ++G+NR TLRKK++ Sbjct: 452 KAAELLGLNRNTLRKKIR 469 >UniRef50_P09432 Nitrogen regulation protein ntrC n=20 Tax=Rhodobacterales RepID=NTRC_RHOCA Length = 457 Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 29/68 (42%), Positives = 46/68 (67%), Gaps = 3/68 (4%) Query: 27 LRDSVKQALKNYFAQLNGQDVND--LYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGIN 84 L S+ + L+ YF L+G ++ LY+ +LAE+E PL+++ + T GNQ + A ++GIN Sbjct: 377 LSASIARHLRRYF-DLHGGNLPPPGLYDRILAEMEAPLIEIALDATGGNQAKCADLLGIN 435 Query: 85 RGTLRKKL 92 R TLRKK+ Sbjct: 436 RNTLRKKI 443 >UniRef50_Q0F179 Putative transcriptional regulator, Fis family protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F179_9PROT Length = 465 Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 46/75 (61%) Query: 24 QKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGI 83 ++ L D+V + + Y QL +L++ +L ++E PLL + ++ GNQ + + M+G+ Sbjct: 386 EETLADAVTRCTRQYLHQLGYASATNLHQHLLEQIEPPLLVLALEQCNGNQLKVSEMLGL 445 Query: 84 NRGTLRKKLKKYGMN 98 NR T+RK L KY +N Sbjct: 446 NRNTVRKLLNKYNIN 460 >UniRef50_C5TGC5 Transcriptional regulator, Fis family n=2 Tax=Zymomonas mobilis RepID=C5TGC5_ZYMMO Length = 104 Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/72 (40%), Positives = 47/72 (65%), Gaps = 3/72 (4%) Query: 22 VTQKPLRDSVKQALKNYFAQLNGQDV--NDLYELVLAEVEQPLLDMVMQYTRGNQTRAAL 79 V + L D+++ L YFA G+ + + L+E +L EVE+PLL + ++ GN+ +AA Sbjct: 23 VPEHGLADAMEAHLLYYFAVF-GESLPPDGLWEHILGEVEKPLLKVALRAVGGNRIKAAK 81 Query: 80 MMGINRGTLRKK 91 ++GINR TLR+K Sbjct: 82 LLGINRNTLRQK 93 >UniRef50_A1ATK4 Two component, sigma54 specific, transcriptional regulator, Fis family n=12 Tax=Deltaproteobacteria RepID=A1ATK4_PELPD Length = 480 Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 42/62 (67%) Query: 31 VKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRK 90 V+ L++ + D +D++ VL +VE+PL+ +++ TR NQ +AA ++GINR TLRK Sbjct: 409 VEAKLRSCLTGIEKLDKSDIHAKVLQQVERPLIRFILEKTRWNQVKAADILGINRNTLRK 468 Query: 91 KL 92 K+ Sbjct: 469 KI 470 >UniRef50_D2LEK1 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LEK1_RHOVA Length = 335 Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 1/69 (1%) Query: 27 LRDSVKQALKNYFAQLNGQ-DVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINR 85 L + ++ L +YF Q LY+ VL +VE PL+ + TRGNQ +AA ++G+NR Sbjct: 257 LNEWMEAYLTDYFGGFGDQLPPPGLYDRVLRDVEAPLITAALTATRGNQIKAAELLGLNR 316 Query: 86 GTLRKKLKK 94 TLRKK+++ Sbjct: 317 NTLRKKVRE 325 >UniRef50_A3ZS60 Nitrogen assimilation regulatory protein n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZS60_9PLAN Length = 479 Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 38/65 (58%) Query: 34 ALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLK 93 A + QL + D+Y L +E LL V+ T GNQ++AA+++GI RG+LR K++ Sbjct: 406 AFDVFLGQLESRGSEDMYAESLEWMEHRLLSFVLDKTAGNQSKAAVLLGITRGSLRHKMR 465 Query: 94 KYGMN 98 G+ Sbjct: 466 ALGIT 470 >UniRef50_D0CFR6 Predicted protein n=1 Tax=Acinetobacter baumannii ATCC 19606 RepID=D0CFR6_ACIBA Length = 77 Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 23/44 (52%), Positives = 35/44 (79%) Query: 54 VLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 V+A +E+PLL + TRGNQT+AA ++G+NRGTLR++LK + + Sbjct: 27 VMALLEKPLLAETLIKTRGNQTKAAELLGLNRGTLRQRLKAHNI 70 >UniRef50_B5YK68 Transcriptional regulator n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YK68_THEYD Length = 300 Score = 52.8 bits (125), Expect = 4e-06, Method: Composition-based stats. Identities = 29/74 (39%), Positives = 44/74 (59%) Query: 24 QKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGI 83 Q +R+ ++ L N + ++LYE V+ EVE+ L + + T GNQ +AA ++GI Sbjct: 226 QFSIRNFLELKLGNLLKEFANIGNSNLYETVIQEVEKALFILAINETGGNQVKAAKILGI 285 Query: 84 NRGTLRKKLKKYGM 97 NR TL KKLK Y + Sbjct: 286 NRNTLNKKLKYYSL 299 >UniRef50_Q7UJV2 Nitrogen regulation protein NR(I) n=1 Tax=Rhodopirellula baltica RepID=Q7UJV2_RHOBA Length = 470 Score = 51.6 bits (122), Expect = 7e-06, Method: Composition-based stats. Identities = 25/53 (47%), Positives = 36/53 (67%) Query: 46 DVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 D L+ LA E LL VM++T GN+ +AA M+GI+RGTLR ++K YG++ Sbjct: 416 DSVTLHSDYLAATEPTLLRTVMKHTGGNRAKAAEMLGIHRGTLRDRMKAYGID 468 >UniRef50_C0QUD7 Nitrogen assimilation regulatory protein n=1 Tax=Persephonella marina EX-H1 RepID=C0QUD7_PERMH Length = 456 Score = 50.8 bits (120), Expect = 1e-05, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 57/91 (62%), Gaps = 6/91 (6%) Query: 9 DVLTVSTVNSQDQVTQKP-LRDSVKQALKN-YFAQLNGQDVNDLYELVLAEVEQPLLDMV 66 ++LTV+ + + KP + D+ ++ LKN A L + ++ E ++++ ++ Sbjct: 370 NILTVNDLTFLREKRVKPQIEDNFEEILKNRVLASLEEGSIEEIKE----KIDKIIVQTA 425 Query: 67 MQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 ++YT+ NQ +A+ ++GINR TLRKK++KYG+ Sbjct: 426 LEYTKHNQVKASQLLGINRATLRKKIQKYGL 456 >UniRef50_A7HH93 Transcriptional regulator, Fis family n=4 Tax=Anaeromyxobacter RepID=A7HH93_ANADF Length = 129 Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 47/74 (63%) Query: 25 KPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGIN 84 +PL + ++Q ++ +F +L G + LY+ V+ EVE+PL+ + G + AA +GI+ Sbjct: 54 RPLDEELQQRVEAFFERLRGHSADGLYDAVMREVERPLIAGALARANGVRAAAAATLGID 113 Query: 85 RGTLRKKLKKYGMN 98 RGTL ++++ G++ Sbjct: 114 RGTLVRRMRALGLD 127 >UniRef50_Q1GGX2 Two component, sigma54 specific, transcriptional regulator, Fis family n=19 Tax=Bacteria RepID=Q1GGX2_SILST Length = 459 Score = 50.4 bits (119), Expect = 2e-05, Method: Composition-based stats. Identities = 30/72 (41%), Positives = 46/72 (63%), Gaps = 3/72 (4%) Query: 23 TQKPLRDSVKQALKNYFAQLNGQDVN--DLYELVLAEVEQPLLDMVMQYTRGNQTRAALM 80 + + L +SV + L+ YF L+G + LY +L EVE PL+++ + T GNQ + A + Sbjct: 375 SNEKLSESVARHLQRYF-DLHGDMLPPPGLYARLLREVEAPLIEISLAATGGNQAKCADL 433 Query: 81 MGINRGTLRKKL 92 +GINR TLRKK+ Sbjct: 434 LGINRNTLRKKI 445 >UniRef50_D2R2G6 Sigma54 specific transcriptional regulator, Fis family n=3 Tax=Planctomycetaceae RepID=D2R2G6_9PLAN Length = 354 Score = 49.7 bits (117), Expect = 3e-05, Method: Composition-based stats. Identities = 26/52 (50%), Positives = 35/52 (67%) Query: 46 DVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 D LYE V+ +VE+ L+ VMQ G QT+AA +GINR TLR KL++Y + Sbjct: 298 DETKLYERVVNKVERELIVQVMQACGGVQTKAATKLGINRNTLRNKLQEYNL 349 >UniRef50_UPI00016C4268 cetoacetate metabolism regulatory protein atoC n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C4268 Length = 475 Score = 48.5 bits (114), Expect = 6e-05, Method: Composition-based stats. Identities = 27/75 (36%), Positives = 47/75 (62%), Gaps = 4/75 (5%) Query: 23 TQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMG 82 ++ P R + Q ++ + +G + +L E E+++ LL MVM+ TRGNQ RAA ++G Sbjct: 395 SEPPARADLHQFVRRRLS--DGSE--NLLEEARLELDRFLLPMVMELTRGNQVRAARVLG 450 Query: 83 INRGTLRKKLKKYGM 97 + R TLR++L + G+ Sbjct: 451 VARLTLRRRLHELGI 465 >UniRef50_D2R311 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R311_9PLAN Length = 511 Score = 48.5 bits (114), Expect = 6e-05, Method: Composition-based stats. Identities = 21/50 (42%), Positives = 36/50 (72%) Query: 48 NDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 NDLY +AE+E+ ++ +V++ T+GN AA ++GI RG+LRKK + + + Sbjct: 432 NDLYADAIAEMERQVIALVLEETKGNIAHAARLLGITRGSLRKKARTHDL 481 >UniRef50_Q2G705 Two component, sigma54 specific, transcriptional regulator, Fis family n=6 Tax=cellular organisms RepID=Q2G705_NOVAD Length = 477 Score = 48.5 bits (114), Expect = 7e-05, Method: Composition-based stats. Identities = 25/55 (45%), Positives = 37/55 (67%), Gaps = 2/55 (3%) Query: 40 AQLNGQDVN--DLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKL 92 A L+ Q++ ++Y+ LA E+PL ++ T GNQ RAA ++GINR TLRK+L Sbjct: 409 AWLSAQNLQPGEVYDAALAAFERPLFLQILALTGGNQLRAAQILGINRNTLRKRL 463 >UniRef50_D2R4P1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R4P1_9PLAN Length = 469 Score = 48.5 bits (114), Expect = 7e-05, Method: Composition-based stats. Identities = 28/84 (33%), Positives = 50/84 (59%), Gaps = 7/84 (8%) Query: 14 STVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGN 73 +T + +DQ+T + LR+ +K + +LYE +L VE PLL+ V++ +G Sbjct: 387 NTGDERDQITTR-LREWALARVKE------AGETGELYEELLKLVEPPLLEAVLKKCKGQ 439 Query: 74 QTRAALMMGINRGTLRKKLKKYGM 97 AA ++G++R T+RKK+ +YG+ Sbjct: 440 CATAARILGMHRTTVRKKIDEYGL 463 >UniRef50_B4UAL8 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Anaeromyxobacter RepID=B4UAL8_ANASK Length = 461 Score = 48.1 bits (113), Expect = 8e-05, Method: Composition-based stats. Identities = 22/45 (48%), Positives = 34/45 (75%) Query: 53 LVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 LVL +VE+ L+ M+ GNQ++AA ++G++R TLR +LKK+GM Sbjct: 416 LVLDDVERKLIAEAMERASGNQSKAARLLGVSRDTLRYRLKKHGM 460 >UniRef50_D2U436 Two-component system, NtrC family, nitrogen regulation response regulator n=2 Tax=Proteobacteria RepID=D2U436_9ENTR Length = 475 Score = 47.8 bits (112), Expect = 1e-04, Method: Composition-based stats. Identities = 26/84 (30%), Positives = 50/84 (59%), Gaps = 8/84 (9%) Query: 15 TVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQ 74 T+ + ++ PL + K AL+N + +L + VL ++E+ +L+ + YT+G++ Sbjct: 400 TLATNNEKWLDPLANWTKTALEN--------NKQNLLQQVLPQIERTMLECALTYTKGHK 451 Query: 75 TRAALMMGINRGTLRKKLKKYGMN 98 AA ++G R TL +KLK++GM+ Sbjct: 452 QEAARLLGWGRNTLTRKLKEFGMS 475 >UniRef50_A3ZZY0 Nitrogen assimilation regulatory protein n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZZY0_9PLAN Length = 477 Score = 47.4 bits (111), Expect = 2e-04, Method: Composition-based stats. Identities = 20/50 (40%), Positives = 34/50 (68%) Query: 48 NDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 ND+Y + E+E+ L+ ++++ T GNQ AA ++GI R +LRKK+ G+ Sbjct: 419 NDIYSEAVIEMERHLISLILRQTGGNQAHAARLLGITRTSLRKKINYLGL 468 >UniRef50_A7MUF9 Putative uncharacterized protein n=4 Tax=Vibrionales RepID=A7MUF9_VIBHB Length = 143 Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 48/78 (61%), Gaps = 6/78 (7%) Query: 13 VSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRG 72 ++T+ +QD+V Q VKQ L+ DL +L L EV+ ++++++ +TRG Sbjct: 64 MTTLITQDEVVQ-----CVKQELELTGIADKKHAAPDLSQL-LPEVKCTIVEVLLLHTRG 117 Query: 73 NQTRAALMMGINRGTLRK 90 NQ +AA M+G+NR TLRK Sbjct: 118 NQAQAARMLGMNRATLRK 135 >UniRef50_Q0C0N3 Nitrogen regulation protein NR(I) n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0C0N3_HYPNA Length = 457 Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 35/50 (70%) Query: 48 NDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 ++++E V+ VE+PL+ + + T GN+ RAA ++G+NR TLR K+ G+ Sbjct: 405 SNVHESVVNRVERPLIRLALSVTSGNKVRAAQLLGMNRNTLRAKINALGI 454 >UniRef50_D2MHT4 Two component, sigma54 specific, transcriptional regulator, Fis family (Fragment) n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MHT4_9BACT Length = 139 Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 34/51 (66%) Query: 47 VNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 + +LY + E+PL +V+ +T GN+++AA ++GINR TL KL +Y + Sbjct: 88 LGELYTEIRETFEKPLFKIVLAHTNGNRSKAAEILGINRNTLHTKLVEYKL 138 >UniRef50_C1ZHW1 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZHW1_PLALI Length = 350 Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 35/54 (64%) Query: 44 GQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 G+D + Y+ V+ VE+ L+ V++ +G QT+AA +GINR TL KK+ Y + Sbjct: 292 GEDCTNAYDRVVTLVEKELILQVLRTCQGVQTKAATKLGINRNTLHKKITDYHL 345 >UniRef50_Q1ITP4 Two component, sigma54 specific, transcriptional regulator, Fis family n=8 Tax=Bacteria RepID=Q1ITP4_ACIBL Length = 485 Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 21/43 (48%), Positives = 30/43 (69%) Query: 55 LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 L EVE+ ++M M+ GNQT AA ++ I+R LR KLKK+G+ Sbjct: 430 LEEVERAFVEMAMKEANGNQTHAARLLDISRDALRYKLKKFGL 472 >UniRef50_C6BW44 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Desulfovibrionales RepID=C6BW44_DESAD Length = 444 Score = 44.7 bits (104), Expect = 9e-04, Method: Composition-based stats. Identities = 23/40 (57%), Positives = 30/40 (75%) Query: 55 LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKK 94 LAEVEQ + V+ T N+TRAA ++GINR TLR+KLK+ Sbjct: 400 LAEVEQEHIKNVLIMTDNNKTRAAEILGINRKTLREKLKR 439 >UniRef50_B9XL82 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=bacterium Ellin514 RepID=B9XL82_9BACT Length = 476 Score = 44.7 bits (104), Expect = 0.001, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 41/69 (59%) Query: 30 SVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLR 89 S+ + Y ++ ++ ++ V+ EVE+ L ++ +GNQ +AA +G++R T+R Sbjct: 400 SIAAGIGTYLSRARRGEMEGVHATVIEEVERELFGQAIELAQGNQAKAARWLGVSRITMR 459 Query: 90 KKLKKYGMN 98 +KL +G++ Sbjct: 460 EKLNHFGLH 468 >UniRef50_C4XRA9 Transcriptional regulatory protein ZraR n=9 Tax=Proteobacteria RepID=C4XRA9_DESMR Length = 462 Score = 43.9 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 22/51 (43%), Positives = 34/51 (66%) Query: 46 DVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYG 96 D+ L + L +VE+ ++ ++ T GN++ AA ++GI R TL KKLKKYG Sbjct: 410 DMAGLAGMALDDVEREVILATLRDTGGNKSEAARVLGITRATLHKKLKKYG 460 >UniRef50_UPI00016C44AF cetoacetate metabolism regulatory protein atoC n=5 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C44AF Length = 490 Score = 43.9 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 21/49 (42%), Positives = 32/49 (65%) Query: 49 DLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 D+Y V V++ LL V+++ GNQ +AA +GI+R TLR KL+ G+ Sbjct: 416 DIYRQVTHTVDRALLTAVLEHVHGNQKQAADRLGISRTTLRAKLQTLGL 464 >UniRef50_A9CI57 Transcriptional regulator n=6 Tax=Rhizobiaceae RepID=A9CI57_AGRT5 Length = 319 Score = 43.5 bits (101), Expect = 0.002, Method: Composition-based stats. Identities = 20/41 (48%), Positives = 29/41 (70%) Query: 55 LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKY 95 LAE E+ L V+ T GN T+AA ++GI+R TL +K+KK+ Sbjct: 276 LAEAERSALRRVLSRTNGNVTQAASLLGISRATLHRKMKKF 316 >UniRef50_B5JH96 Sigma-54 interaction domain family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JH96_9BACT Length = 515 Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/88 (26%), Positives = 49/88 (55%), Gaps = 4/88 (4%) Query: 12 TVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYEL----VLAEVEQPLLDMVM 67 + + +S+++ + PL S+ + + + + ++L E +L +E+ +++ + Sbjct: 425 SAAETDSKEEPVEAPLATSIPEPMPISLPAIYDKLYHELRERQEMRILTLIERQMIERAI 484 Query: 68 QYTRGNQTRAALMMGINRGTLRKKLKKY 95 T GNQ RAA ++GI R TL+K+L +Y Sbjct: 485 GETGGNQARAAEILGITRNTLKKRLDEY 512 >UniRef50_UPI00016C50F5 nitrogen regulation protein NR(I) n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C50F5 Length = 475 Score = 43.5 bits (101), Expect = 0.002, Method: Composition-based stats. Identities = 24/82 (29%), Positives = 45/82 (54%), Gaps = 1/82 (1%) Query: 14 STVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGN 73 ST +T++ LR + ++ QL G++ DL+ ++ +E +LD ++ GN Sbjct: 384 STAAGPVSLTER-LRSLATEWVREQVQQLEGEEPADLHLKLIEAIEPAVLDETLRQVDGN 442 Query: 74 QTRAALMMGINRGTLRKKLKKY 95 + AA +G+ R T+RK ++KY Sbjct: 443 RLVAARWLGLARATVRKLIRKY 464 >UniRef50_B4CX09 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Verrucomicrobia RepID=B4CX09_9BACT Length = 253 Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust. Identities = 16/33 (48%), Positives = 26/33 (78%) Query: 66 VMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 M+ T+GNQ RAA ++GI R TLRK+++++G+ Sbjct: 215 AMKATKGNQVRAAKLLGITRATLRKRIERFGIT 247 >UniRef50_A6UCY3 Two component, sigma54 specific, transcriptional regulator, Fis family n=46 Tax=Alphaproteobacteria RepID=A6UCY3_SINMW Length = 549 Score = 43.1 bits (100), Expect = 0.002, Method: Composition-based stats. Identities = 19/44 (43%), Positives = 30/44 (68%) Query: 55 LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 LAEVE+ L+ +++ RG ++ A +GI R TL +KLK YG++ Sbjct: 497 LAEVEEELIRFALKFYRGQMSQVARKLGIGRSTLYRKLKDYGID 540 >UniRef50_C3WC23 Nitrogen assimilation regulatory protein n=5 Tax=Fusobacterium RepID=C3WC23_FUSMR Length = 466 Score = 43.1 bits (100), Expect = 0.002, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 39/67 (58%) Query: 31 VKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRK 90 +K+ +K+ + + D Y ++++VE+ L+ V++ T G + A ++GI R TLR Sbjct: 399 LKEWIKSEIMEYKNNNQMDYYGNIISKVEKELIRQVLEMTNGKKVETAEILGITRNTLRT 458 Query: 91 KLKKYGM 97 K+ YG+ Sbjct: 459 KMSNYGL 465 >UniRef50_C1ZBV1 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=2 Tax=Planctomyces RepID=C1ZBV1_PLALI Length = 569 Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 34/51 (66%) Query: 48 NDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 +LY L +E+ LL V+Q ++ NQ++AA ++GI RG +R ++ +G+N Sbjct: 508 TNLYAEALEMMEKYLLTRVLQASQANQSKAAEILGITRGKVRDRIAAFGIN 558 >UniRef50_A6C862 Nitrogen regulation protein NR(I) n=2 Tax=Planctomycetaceae RepID=A6C862_9PLAN Length = 470 Score = 42.4 bits (98), Expect = 0.004, Method: Composition-based stats. Identities = 22/59 (37%), Positives = 39/59 (66%), Gaps = 1/59 (1%) Query: 40 AQL-NGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 AQL + + ++YE +LA +E P++++ ++ G AA +G++R TL KKLK+YG+ Sbjct: 409 AQLTDPEQAANVYEQLLALIEPPVMEVALEKFHGQCAPAARCLGLHRTTLSKKLKQYGI 467 >UniRef50_A5L901 Putative uncharacterized protein n=1 Tax=Vibrionales bacterium SWAT-3 RepID=A5L901_9GAMM Length = 94 Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 1/69 (1%) Query: 22 VTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMM 81 +T+ + VKQ LK DL +L L E++ +++ ++ +TRGNQ AA M+ Sbjct: 5 ITRGEVIQCVKQELKLAGIIDKKHAAPDLSQL-LPELKFVIVEALLLHTRGNQALAARML 63 Query: 82 GINRGTLRK 90 GINRG LRK Sbjct: 64 GINRGILRK 72 >UniRef50_C3WJS3 Nitrogen assimilation regulatory protein n=9 Tax=Fusobacterium RepID=C3WJS3_9FUSO Length = 464 Score = 42.4 bits (98), Expect = 0.005, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 42/69 (60%), Gaps = 1/69 (1%) Query: 30 SVKQALKNYFAQLNGQDV-NDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTL 88 S++ +KN +QL ++ +D Y +++++E+ L+ +++ T G + A ++GI R TL Sbjct: 395 SIENLIKNEISQLKSKNKKSDYYFEIISKIEKELIKQILEITNGKKVETAEILGITRNTL 454 Query: 89 RKKLKKYGM 97 R K+ Y + Sbjct: 455 RTKMNYYDL 463 >UniRef50_C1SGC3 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SGC3_9BACT Length = 464 Score = 42.4 bits (98), Expect = 0.005, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 33/49 (67%) Query: 48 NDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYG 96 N+ Y+ + VE P++ VM T N++ +A ++GINR T RKK++++G Sbjct: 411 NNAYDEFMKIVEYPIIKAVMDKTGNNKSVSAKILGINRNTFRKKVREHG 459 >UniRef50_B0SC18 Transcriptional regulator n=7 Tax=Bacteria RepID=B0SC18_LEPBA Length = 705 Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 1/55 (1%) Query: 40 AQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKK 94 QL+G D + E+V++EVE L+ M+ R +TR A +GINR TL KK+K+ Sbjct: 647 GQLDGLDGRAM-EIVVSEVESRLIQYAMKKFRYTKTRVAKFLGINRNTLDKKIKE 700 >UniRef50_A5GBB3 Two component, sigma-54 specific, transcriptional regulator, Fis family n=6 Tax=Desulfuromonadales RepID=A5GBB3_GEOUR Length = 500 Score = 42.4 bits (98), Expect = 0.005, Method: Composition-based stats. Identities = 19/44 (43%), Positives = 33/44 (75%) Query: 55 LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 L E+E+ L+ M ++ + GNQT+AA + ++R TLR ++KK+GM+ Sbjct: 428 LEELERQLIRMGLEISGGNQTKAAKYLKMSRDTLRYRMKKFGMS 471 >UniRef50_Q1D5E1 Sigma-54 dependent transcriptional regulator, Fis family n=4 Tax=Myxococcales RepID=Q1D5E1_MYXXD Length = 529 Score = 42.0 bits (97), Expect = 0.007, Method: Composition-based stats. Identities = 21/45 (46%), Positives = 31/45 (68%) Query: 53 LVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 L LAEVE+ + V+ +GN+T AA ++ I R TL +KLK+YG+ Sbjct: 481 LPLAEVERRHILRVLDAVKGNRTAAARVLAIGRNTLARKLKEYGL 525 >UniRef50_D0MKJ7 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MKJ7_RHOM4 Length = 990 Score = 42.0 bits (97), Expect = 0.007, Method: Composition-based stats. Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 8/88 (9%) Query: 13 VSTVNSQD--QVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYT 70 V T++ +D Q+ LRD + ++ D N + VLA+ E+ L++ V+ Sbjct: 892 VPTIDLKDLSPAVQRALRDEPARPVRTAL------DSNQPLDAVLADTEKALIEQVLAEN 945 Query: 71 RGNQTRAALMMGINRGTLRKKLKKYGMN 98 RG + AA +G+ R L KK+K+ G++ Sbjct: 946 RGRISAAARALGLTRQGLYKKMKRLGID 973 >UniRef50_A9FB29 Sigma-54 dependent DNA-binding response regulator n=15 Tax=Bacteria RepID=A9FB29_SORC5 Length = 461 Score = 42.0 bits (97), Expect = 0.007, Method: Composition-based stats. Identities = 21/51 (41%), Positives = 36/51 (70%), Gaps = 1/51 (1%) Query: 48 NDLYELV-LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 +D ELV + EVE+ + V++ GN+++AA ++G +R TL +KL++YGM Sbjct: 401 DDPTELVPMEEVERRYILRVLEVVGGNKSQAAQILGFDRATLYRKLERYGM 451 >UniRef50_C7LP79 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Desulfovibrionales RepID=C7LP79_DESBD Length = 458 Score = 41.6 bits (96), Expect = 0.007, Method: Composition-based stats. Identities = 22/57 (38%), Positives = 36/57 (63%) Query: 39 FAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKY 95 F Q + Q+ + L E+E+ + MVM +GN++RAA ++GI R TL +KL++Y Sbjct: 387 FCQKSCQNPREKGFSTLEELERSHISMVMHAVQGNKSRAAQVLGIGRKTLYRKLEEY 443 >UniRef50_A5D511 Transcriptional regulator n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D511_PELTS Length = 478 Score = 41.6 bits (96), Expect = 0.007, Method: Composition-based stats. Identities = 21/44 (47%), Positives = 31/44 (70%) Query: 54 VLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 V+ E+ LL+ V++ T GN+ +AA M+GI+R TL KL+KY M Sbjct: 430 VINSKEKELLEEVLRNTGGNKRKAAEMLGIHRTTLYYKLRKYNM 473 >UniRef50_A6G018 Two component, sigma54 specific, transcriptional regulator, Fis family protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G018_9DELT Length = 628 Score = 41.6 bits (96), Expect = 0.007, Method: Composition-based stats. Identities = 20/41 (48%), Positives = 29/41 (70%) Query: 53 LVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLK 93 L LAE+EQ + ++ T GN+ RAA ++GI+R TL +KLK Sbjct: 584 LPLAELEQQAIAAALEATGGNKARAAALLGIDRTTLYRKLK 624 >UniRef50_C5BCG1 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Edwardsiella ictaluri 93-146 RepID=C5BCG1_EDWI9 Length = 458 Score = 41.6 bits (96), Expect = 0.008, Method: Composition-based stats. Identities = 17/32 (53%), Positives = 25/32 (78%) Query: 66 VMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 +MQ R N+TR A ++GI+RGTL KK++ YG+ Sbjct: 427 LMQRYRANKTRIAQVLGISRGTLYKKIRHYGL 458 >UniRef50_C6HWP3 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HWP3_9BACT Length = 375 Score = 41.6 bits (96), Expect = 0.008, Method: Composition-based stats. Identities = 16/44 (36%), Positives = 33/44 (75%) Query: 55 LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 + ++E+ L+ ++ GN+++AA ++GINR TL +KLK++G++ Sbjct: 332 MGDIERTLVQKALERAGGNRSKAAELLGINRTTLIEKLKRFGIS 375 >UniRef50_B8DQ12 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfovibrio vulgaris str. 'Miyazaki F' RepID=B8DQ12_DESVM Length = 474 Score = 41.6 bits (96), Expect = 0.008, Method: Composition-based stats. Identities = 22/54 (40%), Positives = 36/54 (66%), Gaps = 1/54 (1%) Query: 45 QDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 QD +DL +LA E L++ ++ GN TRAA +G++R TL +K+KK+G++ Sbjct: 412 QDRSDLAG-ILAHNEAALIENALREQGGNVTRAASALGVSRATLYEKMKKHGVH 464 >UniRef50_C0CQX1 Putative uncharacterized protein n=1 Tax=Blautia hydrogenotrophica DSM 10507 RepID=C0CQX1_9FIRM Length = 138 Score = 41.6 bits (96), Expect = 0.009, Method: Compositional matrix adjust. Identities = 18/40 (45%), Positives = 29/40 (72%) Query: 55 LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKK 94 LAE+E+ ++ +Q GNQT+AA+ +GI+R TL +K+ K Sbjct: 97 LAEMEKKMIQQALQEEEGNQTKAAIRLGIDRSTLYRKISK 136 >UniRef50_Q2LXW1 Sigma-54 dependent transcription regulator n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LXW1_SYNAS Length = 450 Score = 41.2 bits (95), Expect = 0.009, Method: Composition-based stats. Identities = 19/43 (44%), Positives = 31/43 (72%) Query: 53 LVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKY 95 L L EVE+ + ++ YT GN T +A ++GI+R TLR+K+++Y Sbjct: 402 LSLREVEREHILKILHYTNGNITSSAQILGISRPTLRQKIRQY 444 >UniRef50_Q1K1J7 Response regulator receiver protein n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K1J7_DESAC Length = 98 Score = 41.2 bits (95), Expect = 0.010, Method: Compositional matrix adjust. Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 25/96 (26%) Query: 3 EQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPL 62 +Q V+SD L VST +S +T P NG + L EVE+ L Sbjct: 28 DQPVDSDTL-VSTDSSGMGITLPP----------------NG--------ITLDEVEKML 62 Query: 63 LDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 + + GNQT+AA +G++R T+R ++KK+G+N Sbjct: 63 IQQALLRYDGNQTKAANCLGMSRDTIRYRMKKFGLN 98 >UniRef50_A6CEU3 Acetoacetate metabolism regulatory protein atoC n=2 Tax=Planctomycetaceae RepID=A6CEU3_9PLAN Length = 346 Score = 41.2 bits (95), Expect = 0.011, Method: Composition-based stats. Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 5/81 (6%) Query: 15 TVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQ 74 ++ S+ Q + RD V L Q G+ D++ +++ VE+ ++ V++ +G Q Sbjct: 264 SLPSKAQDPETMCRDLVNMEL-----QRVGESSTDVHTQIVSLVEKEVILQVLRSCQGVQ 318 Query: 75 TRAALMMGINRGTLRKKLKKY 95 T+ A +GINR TL KK+ +Y Sbjct: 319 TKTATRLGINRNTLHKKISEY 339 >UniRef50_A3PJU4 GAF modulated sigma54 specific transcriptional regulator, Fis family n=4 Tax=Alphaproteobacteria RepID=A3PJU4_RHOS1 Length = 645 Score = 41.2 bits (95), Expect = 0.012, Method: Composition-based stats. Identities = 18/46 (39%), Positives = 29/46 (63%) Query: 52 ELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 E L EVE+ + RGN TR A ++G++R TL +K+++YG+ Sbjct: 595 EQSLDEVEETAIRQAFAAARGNVTRVAAILGVSRPTLYRKMRQYGI 640 >UniRef50_Q1IVS2 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IVS2_ACIBL Length = 319 Score = 40.8 bits (94), Expect = 0.012, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 40/64 (62%), Gaps = 5/64 (7%) Query: 35 LKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKK 94 L ++ Q G+ + + L E+E+ + V+ TRG +++AA ++GI+R TL +K K+ Sbjct: 261 LPSFVRQATGRPM-----MTLEELERSYIAEVLDATRGKKSKAAEILGISRKTLLEKRKR 315 Query: 95 YGMN 98 YG++ Sbjct: 316 YGLD 319 >UniRef50_B9JZ35 Transcriptional regulator n=2 Tax=Alphaproteobacteria RepID=B9JZ35_AGRVS Length = 318 Score = 40.8 bits (94), Expect = 0.013, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 37/55 (67%), Gaps = 5/55 (9%) Query: 44 GQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 G++ +DL+E E+ L V+ T+GN ++AA ++GI+R TL +K+K++ ++ Sbjct: 269 GEEGDDLHE-----AERAALRRVLSRTKGNVSQAAQLLGISRATLHRKMKRFNIH 318 >UniRef50_D2MCQ1 Transcriptional regulator PpsR, Fis family n=1 Tax=Rhodopseudomonas palustris DX-1 RepID=D2MCQ1_RHOPA Length = 465 Score = 40.8 bits (94), Expect = 0.013, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 40/70 (57%) Query: 29 DSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTL 88 D+++QAL QL + L + ++ VEQ + + +RGN+T A ++G++R +L Sbjct: 374 DALRQALGPISKQLGRSSLRKLVKNAVSIVEQHYVKEALVRSRGNRTATAELLGLSRQSL 433 Query: 89 RKKLKKYGMN 98 KL +YG + Sbjct: 434 YAKLSRYGFD 443 >UniRef50_B9M1N5 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Geobacter RepID=B9M1N5_GEOSF Length = 483 Score = 40.8 bits (94), Expect = 0.014, Method: Composition-based stats. Identities = 19/46 (41%), Positives = 31/46 (67%) Query: 50 LYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKY 95 +YE V +E+ L+ M M+ + NQ AA ++GI+R TLR +L++Y Sbjct: 432 IYESVNMGLEKALIHMAMEKSNNNQVFAAKLLGISRNTLRDRLERY 477 >UniRef50_D0LIH3 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LIH3_HALO1 Length = 466 Score = 40.8 bits (94), Expect = 0.015, Method: Composition-based stats. Identities = 22/54 (40%), Positives = 36/54 (66%), Gaps = 2/54 (3%) Query: 44 GQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 G +DL L L E+E+ + V++ G +T+A+ ++GINR TL KKL++YG+ Sbjct: 414 GDSADDL--LSLDELERLHILRVLEACGGQKTKASAVLGINRTTLWKKLRQYGL 465 >UniRef50_Q8ABU5 RteB, two-component system response regulator n=6 Tax=Bacteroides RepID=Q8ABU5_BACTN Length = 432 Score = 40.4 bits (93), Expect = 0.016, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 35/56 (62%) Query: 41 QLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYG 96 + +G D ++ L A+ E+ + ++ T GN+ AA ++GI+R TL +KL+KYG Sbjct: 375 EADGADASETLALNDAQKEKECIMRALEETGGNRKEAARLLGISRSTLYEKLRKYG 430 >UniRef50_A7MUS2 Putative uncharacterized protein n=2 Tax=Vibrionales RepID=A7MUS2_VIBHB Length = 95 Score = 40.4 bits (93), Expect = 0.016, Method: Compositional matrix adjust. Identities = 18/33 (54%), Positives = 24/33 (72%) Query: 62 LLDMVMQYTRGNQTRAALMMGINRGTLRKKLKK 94 L +M +TRGNQT+AA ++GINRG KLK+ Sbjct: 48 LYSELMIHTRGNQTKAAKILGINRGNFSAKLKQ 80 >UniRef50_A9GFC9 Sigma-54 dependent DNA-binding response regulator n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GFC9_SORC5 Length = 604 Score = 40.4 bits (93), Expect = 0.016, Method: Composition-based stats. Identities = 18/42 (42%), Positives = 29/42 (69%) Query: 55 LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYG 96 LA+ E+ L+ + ++ RGN+ RAA ++GI+R L KL+ YG Sbjct: 520 LADAERKLILLTLEAVRGNKQRAARVLGISRRGLYSKLQAYG 561 >UniRef50_C1ZLR0 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZLR0_PLALI Length = 555 Score = 40.4 bits (93), Expect = 0.016, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 31/48 (64%) Query: 50 LYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 L+ LA+ E L ++ R N + AA ++GI+R TL++KL+++G+ Sbjct: 504 LHARFLAQAEAELFQTILHQCRQNMSEAARLLGIHRTTLKRKLEEFGL 551 >UniRef50_C6BWX2 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BWX2_DESAD Length = 447 Score = 40.4 bits (93), Expect = 0.017, Method: Compositional matrix adjust. Identities = 19/43 (44%), Positives = 32/43 (74%) Query: 55 LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 L EVE+ ++ VM T GN+T+AA ++GI+R +L +K+K+ G+ Sbjct: 401 LEEVERDHIEKVMLATNGNKTQAAKILGIDRVSLWRKMKRLGL 443 >UniRef50_Q1D245 Sigma-54 dependent DNA-binding response regulator MrpB n=3 Tax=Cystobacterineae RepID=Q1D245_MYXXD Length = 488 Score = 40.4 bits (93), Expect = 0.017, Method: Composition-based stats. Identities = 18/43 (41%), Positives = 29/43 (67%) Query: 55 LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 L E E+ L+ M T+G++ R ++GI+R TL +KL+KYG+ Sbjct: 429 LEEAERQLIARAMTVTKGHKGRTCQILGISRPTLERKLQKYGL 471 >UniRef50_Q1Q0T6 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q0T6_9BACT Length = 472 Score = 40.4 bits (93), Expect = 0.017, Method: Composition-based stats. Identities = 17/46 (36%), Positives = 33/46 (71%) Query: 53 LVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 L L ++E+ L+ ++ ++ N T+AA ++G+ RGT R +L+KYG++ Sbjct: 426 LSLDDLEKQLVAKALERSKNNITKAAKLLGLTRGTFRYRLQKYGIS 471 >UniRef50_Q2TJQ8 PpsR2 n=1 Tax=Thiocapsa roseopersicina RepID=Q2TJQ8_THIRO Length = 455 Score = 40.4 bits (93), Expect = 0.018, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 34/49 (69%) Query: 50 LYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 L + ++ +EQ ++ ++ TRGN+T A ++G++R +L KLK+YGM+ Sbjct: 396 LVDEAISVLEQHYIEEALELTRGNRTATADLLGLSRQSLYVKLKRYGMD 444 >UniRef50_B5EFV3 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Geobacter RepID=B5EFV3_GEOBB Length = 482 Score = 40.4 bits (93), Expect = 0.018, Method: Compositional matrix adjust. Identities = 19/46 (41%), Positives = 31/46 (67%) Query: 50 LYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKY 95 +YE V +E+ L+ M M+ + NQ AA ++GI+R TLR +L++Y Sbjct: 431 IYESVNMGLEKALIHMAMEKSNNNQVFAAKLLGISRNTLRDRLERY 476 >UniRef50_B2T4G6 Sigma54 specific transcriptional regulator, Fis family n=8 Tax=Burkholderia RepID=B2T4G6_BURPP Length = 772 Score = 40.4 bits (93), Expect = 0.018, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 7/62 (11%) Query: 32 KQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKK 91 + +L + QL G+D LA E L+D ++ T GN++ AA M+G+ R T+ ++ Sbjct: 269 RASLADMLLQLEGRDK-------LAAAEDLLIDRALERTSGNKSAAASMLGVGRKTIERR 321 Query: 92 LK 93 LK Sbjct: 322 LK 323 >UniRef50_B9M8I4 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Geobacter RepID=B9M8I4_GEOSF Length = 455 Score = 40.0 bits (92), Expect = 0.022, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 35/55 (63%) Query: 43 NGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 +GQ+ L L EVE+ + V+ Y R + RAA ++GI+R TL +++K+YG+ Sbjct: 395 DGQERFPLLLKPLHEVEREHIQNVLCYVRNEKKRAAEILGISRPTLDRRIKEYGL 449 >UniRef50_A6G1D1 Response regulator receiver domain protein (CheY-like) n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G1D1_9DELT Length = 304 Score = 40.0 bits (92), Expect = 0.023, Method: Composition-based stats. Identities = 18/44 (40%), Positives = 29/44 (65%) Query: 55 LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 L E+E L + +Q + G RA+ ++GI R LR+KL+K+G+N Sbjct: 255 LREIEIAALRLALQQSGGRIVRASEILGITRHALRRKLEKFGLN 298 >UniRef50_B9JLC5 Transcriptional regulator protein n=8 Tax=Alphaproteobacteria RepID=B9JLC5_AGRRK Length = 322 Score = 40.0 bits (92), Expect = 0.024, Method: Composition-based stats. Identities = 18/42 (42%), Positives = 28/42 (66%) Query: 56 AEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 A E+ ++ + T GN + AA++MGI+R TL +KLKK G+ Sbjct: 280 ATAERSVIQRALARTSGNISAAAMIMGISRATLHRKLKKLGL 321 >UniRef50_D2R5F6 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R5F6_9PLAN Length = 482 Score = 40.0 bits (92), Expect = 0.024, Method: Composition-based stats. Identities = 17/43 (39%), Positives = 32/43 (74%) Query: 55 LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 LA+VE+ LL+ ++ +R N++RAA ++GI+R L ++L + G+ Sbjct: 416 LADVEKQLLERALRESRNNKSRAAELLGISRARLLRRLAQLGL 458 >UniRef50_P17899 Transcriptional regulatory protein flbD n=24 Tax=Alphaproteobacteria RepID=FLBD_CAUCR Length = 455 Score = 40.0 bits (92), Expect = 0.025, Method: Composition-based stats. Identities = 20/41 (48%), Positives = 30/41 (73%) Query: 55 LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKY 95 +AEVEQ L+ +++ GN+T AA ++GI+ TLR KLK+Y Sbjct: 397 VAEVEQQLIIDTLEHCLGNRTHAANILGISIRTLRNKLKEY 437 >UniRef50_A6GK43 Transcriptional regulator, NifA subfamily, Fis Family (Fragment) n=3 Tax=cellular organisms RepID=A6GK43_9DELT Length = 952 Score = 40.0 bits (92), Expect = 0.026, Method: Composition-based stats. Identities = 17/41 (41%), Positives = 30/41 (73%) Query: 55 LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKY 95 + +E+ L+D M+ T NQT+AA ++G++R L+KKLK++ Sbjct: 908 IERLERELIDRAMKRTNNNQTQAAKLLGLSRYGLQKKLKRF 948 >UniRef50_A0LND9 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Deltaproteobacteria RepID=A0LND9_SYNFM Length = 483 Score = 39.7 bits (91), Expect = 0.027, Method: Composition-based stats. Identities = 17/46 (36%), Positives = 32/46 (69%) Query: 50 LYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKY 95 ++E ++ VE+ LL V++ NQ +AA ++G++R TLR ++KK+ Sbjct: 431 MHESIIDMVERILLSKVLEQCGNNQVKAARVLGVSRNTLRHRMKKF 476 >UniRef50_Q01VW0 Transcriptional regulator, Fis family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01VW0_SOLUE Length = 91 Score = 39.7 bits (91), Expect = 0.027, Method: Compositional matrix adjust. Identities = 16/41 (39%), Positives = 31/41 (75%) Query: 58 VEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 +E+ ++ V++ ++GNQ AA +GI+R TL++K+ +YG+N Sbjct: 26 LEKSMIQSVLERSKGNQCAAAKQLGIHRNTLQRKMVEYGLN 66 >UniRef50_Q02BY0 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q02BY0_SOLUE Length = 447 Score = 39.7 bits (91), Expect = 0.027, Method: Composition-based stats. Identities = 20/45 (44%), Positives = 30/45 (66%) Query: 53 LVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 L L + E+ LL ++ T GNQT+AA ++ I R TLR K+KK+ + Sbjct: 402 LSLEDNERSLLVRALEKTEGNQTQAARLLRITRDTLRYKMKKFNL 446 >UniRef50_C0ZHT6 Probable transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZHT6_BREBN Length = 593 Score = 39.7 bits (91), Expect = 0.028, Method: Composition-based stats. Identities = 20/48 (41%), Positives = 32/48 (66%), Gaps = 3/48 (6%) Query: 53 LVLAEVEQPLLDMVMQYTR---GNQTRAALMMGINRGTLRKKLKKYGM 97 L+L E+E+ +D MQ R G + AA ++GI+R TL +KL++YG+ Sbjct: 545 LLLKELERAAIDTAMQQIRDRNGRKEEAAALLGISRATLFRKLREYGI 592 >UniRef50_C1A4S9 Fis family transcriptional regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A4S9_GEMAT Length = 418 Score = 39.7 bits (91), Expect = 0.028, Method: Composition-based stats. Identities = 19/43 (44%), Positives = 28/43 (65%) Query: 55 LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 L VE+ + + RGN+TRAA +GI R TL +K+K+YG+ Sbjct: 375 LDAVEREAIRAALAAHRGNRTRAAQGLGIARSTLLEKIKRYGL 417 >UniRef50_C8R333 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R333_9DELT Length = 464 Score = 39.7 bits (91), Expect = 0.028, Method: Composition-based stats. Identities = 18/43 (41%), Positives = 30/43 (69%) Query: 55 LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 L EVE+ L+ ++ T NQT+AA ++ ++ TLR ++KKYG+ Sbjct: 421 LEEVEKTLIRQALERTNNNQTQAARLLQVSYDTLRYQVKKYGL 463 >UniRef50_Q06065 Acetoacetate metabolism regulatory protein atoC n=32 Tax=Proteobacteria RepID=ATOC_ECOLI Length = 461 Score = 39.7 bits (91), Expect = 0.030, Method: Composition-based stats. Identities = 18/44 (40%), Positives = 31/44 (70%) Query: 55 LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 + VE+ ++ V++ GN+TR ALM+GI+R L KL++YG++ Sbjct: 414 IKRVEKRIIMEVLEQQEGNRTRTALMLGISRRALMYKLQEYGID 457 >UniRef50_B8DQ72 Two component, sigma54 specific, transcriptional regulator, Fis family n=6 Tax=Desulfovibrio RepID=B8DQ72_DESVM Length = 486 Score = 39.7 bits (91), Expect = 0.030, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 47/80 (58%), Gaps = 11/80 (13%) Query: 18 SQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRA 77 + DQ Q+ +R ++ ++ D +++++ ++ V + ++ + T GN+TRA Sbjct: 411 AADQTMQELIRRTLSES-----------DGDNVFDSLMDHVGRLVVREALHLTGGNRTRA 459 Query: 78 ALMMGINRGTLRKKLKKYGM 97 A ++G++R TL K++KYG+ Sbjct: 460 ARLLGLSRPTLLAKIEKYGL 479 >UniRef50_B3E4E8 Putative sigma54 specific transcriptional regulator n=1 Tax=Geobacter lovleyi SZ RepID=B3E4E8_GEOLS Length = 408 Score = 39.7 bits (91), Expect = 0.031, Method: Composition-based stats. Identities = 18/44 (40%), Positives = 32/44 (72%) Query: 54 VLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 +L + E+ L++ ++ +GN+T+AA +G++R LRKKLK+ GM Sbjct: 364 LLKDSEKQLIEQALKEAKGNKTQAAERLGMSREGLRKKLKRLGM 407 >UniRef50_C6IXE0 Transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IXE0_9BACL Length = 612 Score = 39.7 bits (91), Expect = 0.031, Method: Composition-based stats. Identities = 17/44 (38%), Positives = 29/44 (65%) Query: 54 VLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 + E E L+ ++ T GN++ AA ++GI+RGTL KK++ Y + Sbjct: 568 ITPEEEMELMKEALERTAGNKSNAAKLLGISRGTLYKKIRDYNL 611 >UniRef50_A3EPR9 Putative two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Leptospirillum RepID=A3EPR9_9BACT Length = 489 Score = 39.7 bits (91), Expect = 0.033, Method: Composition-based stats. Identities = 19/41 (46%), Positives = 29/41 (70%) Query: 57 EVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 EVE+ L+ + ++ N+T+AA M+GI+ TLR KL +YGM Sbjct: 422 EVERELIRVTLEACGQNRTQAAKMLGISVRTLRNKLNEYGM 462 >UniRef50_A6G1V7 Sigma-54 dependent transcriptional regulator, Fis family protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G1V7_9DELT Length = 296 Score = 39.7 bits (91), Expect = 0.034, Method: Composition-based stats. Identities = 19/45 (42%), Positives = 27/45 (60%) Query: 52 ELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYG 96 E+ L E+ + VM Y GN+ RAA ++GI + TL +KLK G Sbjct: 250 EMSLEHAERRAIRSVMDYAEGNKRRAARILGIGKTTLYRKLKLLG 294 >UniRef50_Q46PB6 Helix-turn-helix, Fis-type n=7 Tax=Burkholderiaceae RepID=Q46PB6_RALEJ Length = 592 Score = 39.3 bits (90), Expect = 0.035, Method: Composition-based stats. Identities = 19/43 (44%), Positives = 28/43 (65%) Query: 55 LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 LAE E +L + GN +RAA ++GI+R TL +L+KYG+ Sbjct: 545 LAETEVAMLRAAVAEANGNLSRAARVLGISRPTLAYRLQKYGI 587 >UniRef50_B8FXH0 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8FXH0_DESHD Length = 703 Score = 39.3 bits (90), Expect = 0.035, Method: Composition-based stats. Identities = 18/46 (39%), Positives = 29/46 (63%) Query: 52 ELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 E L E+ +LD ++ +GN+ +AA ++GI+R L KKL KY + Sbjct: 656 EYALQAAEREILDKTLRRVQGNKVQAARILGIHRSVLYKKLAKYNI 701 >UniRef50_Q1INE5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Acidobacteria RepID=Q1INE5_ACIBL Length = 459 Score = 39.3 bits (90), Expect = 0.039, Method: Compositional matrix adjust. Identities = 19/43 (44%), Positives = 28/43 (65%) Query: 55 LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 L ++E+ + V+ T NQTRAA M+ I+R TL K+K+YG Sbjct: 408 LEDIEKEHILHVLDETNWNQTRAAEMLDIDRVTLHHKIKRYGW 450 >UniRef50_A4ITB8 Sigma-L-dependent transcriptional regulator n=1 Tax=Geobacillus thermodenitrificans NG80-2 RepID=A4ITB8_GEOTN Length = 593 Score = 39.3 bits (90), Expect = 0.040, Method: Composition-based stats. Identities = 20/39 (51%), Positives = 28/39 (71%) Query: 55 LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLK 93 LAE+E+ ++ V++ NQTRAA +GINR TL +KLK Sbjct: 555 LAEIEKEIIWKVLEEENMNQTRAAKRLGINRSTLWRKLK 593 >UniRef50_A5CY60 Transcriptional activator of acetoin/glycerol metabolism n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5CY60_PELTS Length = 692 Score = 39.3 bits (90), Expect = 0.042, Method: Composition-based stats. Identities = 26/83 (31%), Positives = 47/83 (56%), Gaps = 5/83 (6%) Query: 15 TVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQ 74 ++ QD ++ +R S+ +A KN ++ +D E +E+ ++ ++ T GN Sbjct: 611 SIEEQDLLSYPGIRKSL-EADKNPAVEVPPPQFDDNLE----SLEKRAVEEALKQTGGNI 665 Query: 75 TRAALMMGINRGTLRKKLKKYGM 97 TRAA +G+ R TL +K+KKYG+ Sbjct: 666 TRAAGRLGVTRKTLYRKIKKYGI 688 >UniRef50_Q1PXP1 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PXP1_9BACT Length = 455 Score = 38.9 bits (89), Expect = 0.049, Method: Composition-based stats. Identities = 20/39 (51%), Positives = 26/39 (66%) Query: 54 VLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKL 92 VL EVE+ L++ Q T GNQ + A ++GI R TLR KL Sbjct: 413 VLTEVEKRLIEWAHQKTNGNQVKMAEILGIPRTTLRNKL 451 >UniRef50_C1SGB7 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SGB7_9BACT Length = 473 Score = 38.9 bits (89), Expect = 0.049, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 30/44 (68%) Query: 55 LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 +AE+E+ L+ ++ T GN+T+AA M+GI TLR KL +Y N Sbjct: 421 IAEMERELIIKTLKETGGNRTKAADMLGITVRTLRNKLNEYKEN 464 >UniRef50_Q1ZH58 Putative regulatory protein n=2 Tax=Gammaproteobacteria RepID=Q1ZH58_9GAMM Length = 472 Score = 38.9 bits (89), Expect = 0.051, Method: Compositional matrix adjust. Identities = 18/40 (45%), Positives = 26/40 (65%) Query: 59 EQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 E+ L++M MQ+ +GN + A I R TL+ KLKKY +N Sbjct: 429 EKKLINMAMQHFKGNSSALARRFKIPRTTLQSKLKKYALN 468 >UniRef50_A4IPF8 Transcriptional regulator n=6 Tax=Bacillales RepID=A4IPF8_GEOTN Length = 571 Score = 38.9 bits (89), Expect = 0.054, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 32/53 (60%) Query: 44 GQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYG 96 G ++ D ++ ++ + E+ + + GN+ AA +GI+R TL +KLKKYG Sbjct: 518 GANIADQWKEIVYQSERERIAAALVAANGNKAEAARRLGIHRSTLYEKLKKYG 570 >UniRef50_Q6MI14 Conserved two-component system, regulatory protein n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MI14_BDEBA Length = 174 Score = 38.9 bits (89), Expect = 0.054, Method: Compositional matrix adjust. Identities = 18/43 (41%), Positives = 32/43 (74%) Query: 52 ELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKK 94 E+ LA +E+ +D V+Q + GN T+AA +G++R +L++KL+K Sbjct: 127 EISLARMEREYIDYVLQSSEGNITQAAKKLGLHRQSLQRKLRK 169 >UniRef50_Q1D6H5 Sigma-54 dependent DNA-binding response regulator n=7 Tax=Myxococcales RepID=Q1D6H5_MYXXD Length = 474 Score = 38.9 bits (89), Expect = 0.055, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 35/51 (68%) Query: 47 VNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 + D+ + AE+E+ L+ ++ T GN TRAA ++ I+R +L+ K+K++G+ Sbjct: 410 LKDIVRMKAAELERDLIVKKLEETGGNVTRAARLLQISRKSLQTKMKEFGL 460 >UniRef50_Q6MHX6 Transcriptional regulatory protein flbD n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MHX6_BDEBA Length = 280 Score = 38.9 bits (89), Expect = 0.056, Method: Compositional matrix adjust. Identities = 20/41 (48%), Positives = 29/41 (70%) Query: 55 LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKY 95 L+EVE+ L+ ++ T N+TRAA M+GI+ TLR KL +Y Sbjct: 234 LSEVEKRLIIQTLELTAQNRTRAAQMLGISIRTLRNKLNEY 274 >UniRef50_B8KX17 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=gamma proteobacterium NOR51-B RepID=B8KX17_9GAMM Length = 459 Score = 38.9 bits (89), Expect = 0.058, Method: Composition-based stats. Identities = 22/58 (37%), Positives = 34/58 (58%) Query: 40 AQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 +++ DVN E L +E+ +LD M R N+T AA +GI+ +LR +LKK G+ Sbjct: 400 GRIDLSDVNGDLESFLNTIEREVLDQAMLKHRWNKTAAAKALGISFRSLRYRLKKLGL 457 >UniRef50_B8FEL6 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FEL6_DESAA Length = 619 Score = 38.5 bits (88), Expect = 0.061, Method: Composition-based stats. Identities = 26/86 (30%), Positives = 48/86 (55%), Gaps = 12/86 (13%) Query: 15 TVNSQDQVTQKPL--RDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRG 72 TVN D ++ +P+ + + QA++N G D+ E VE+ L+ + RG Sbjct: 544 TVNRLDFISPEPVQAKAPLSQAMEN------GADLRGATE----NVEKALIKKALDQHRG 593 Query: 73 NQTRAALMMGINRGTLRKKLKKYGMN 98 +++R A +GI+R TL +K+K+ G++ Sbjct: 594 HKSRTAESLGISRKTLFRKMKRLGLS 619 >UniRef50_Q1NWA6 Response regulator receiver n=2 Tax=Deltaproteobacteria RepID=Q1NWA6_9DELT Length = 476 Score = 38.5 bits (88), Expect = 0.067, Method: Composition-based stats. Identities = 17/44 (38%), Positives = 28/44 (63%) Query: 55 LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 L E+ + +Q+T GN+T+ A ++GI TL K+KKYG++ Sbjct: 433 LEAAEKTTVGQALQHTGGNRTKTAAILGITHKTLLAKIKKYGLS 476 >UniRef50_A8V246 Two component, sigma54 specific, transcriptional regulator, Fis family protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8V246_9AQUI Length = 454 Score = 38.5 bits (88), Expect = 0.068, Method: Composition-based stats. Identities = 17/42 (40%), Positives = 32/42 (76%) Query: 57 EVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 ++E+ L++ V++ + N +++A ++GINR TLRKKL+K +N Sbjct: 411 KIEKILIENVLKKSNFNLSKSAQILGINRATLRKKLEKLNIN 452 >UniRef50_D0LYF6 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LYF6_HALO1 Length = 462 Score = 38.5 bits (88), Expect = 0.069, Method: Composition-based stats. Identities = 16/41 (39%), Positives = 30/41 (73%) Query: 55 LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKY 95 + +VE+ L++ + T GN+T AA ++G+NR TL +K++K+ Sbjct: 417 IEDVERRLIEEALDRTGGNRTEAAALLGVNRTTLVEKIRKH 457 >UniRef50_A4EB89 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4EB89_9ACTN Length = 405 Score = 38.5 bits (88), Expect = 0.073, Method: Composition-based stats. Identities = 21/47 (44%), Positives = 33/47 (70%), Gaps = 1/47 (2%) Query: 48 NDLYEL-VLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLK 93 +DLY L LA+ E+ + +V+ + GN+TRAA ++GI+R TL + LK Sbjct: 355 SDLYILRPLADTERDIAHLVVDHLHGNRTRAAEVLGISRTTLWRLLK 401 >UniRef50_B9XDL8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=bacterium Ellin514 RepID=B9XDL8_9BACT Length = 472 Score = 38.5 bits (88), Expect = 0.075, Method: Compositional matrix adjust. Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 1/81 (1%) Query: 15 TVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQ 74 ++N +Q Q P D+ ++ NGQ + L LA +E+ L + GN+ Sbjct: 389 SLNRSEQRLQHPT-DAPASGAPLTLSKTNGQTSAETGTLNLATLERQKLFEALASANGNK 447 Query: 75 TRAALMMGINRGTLRKKLKKY 95 ++AA M+G++R ++L+KY Sbjct: 448 SKAATMVGLSRTAFHRRLQKY 468 >UniRef50_UPI0001698811 sigma-54-dependent transcriptional regulator n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001698811 Length = 226 Score = 38.1 bits (87), Expect = 0.078, Method: Compositional matrix adjust. Identities = 18/45 (40%), Positives = 31/45 (68%) Query: 53 LVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 LVL E+E L+ + T GN+++AA ++G++R TL ++KKY + Sbjct: 168 LVLDELEANLIQQALGRTSGNRSKAARLLGLSRDTLLYRMKKYAI 212 >UniRef50_B8DQD3 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Desulfovibrionales RepID=B8DQD3_DESVM Length = 515 Score = 38.1 bits (87), Expect = 0.078, Method: Composition-based stats. Identities = 17/45 (37%), Positives = 31/45 (68%) Query: 53 LVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 + L E E+ ++ V++ GN+T AA ++ I+R +L +KLK+YG+ Sbjct: 471 MTLDENERAHIEWVLELAGGNRTHAAKVLDIDRASLWRKLKRYGL 515 >UniRef50_B3Q7B9 Transcriptional regulator, Fis family n=9 Tax=Bradyrhizobiaceae RepID=B3Q7B9_RHOPT Length = 464 Score = 38.1 bits (87), Expect = 0.080, Method: Compositional matrix adjust. Identities = 21/70 (30%), Positives = 40/70 (57%) Query: 29 DSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTL 88 D+++QAL QL + L + ++ VEQ + + ++GN+T A ++G++R +L Sbjct: 374 DALRQALGPISKQLGRSSLRKLVKNAVSIVEQHYVKEALLRSKGNRTATAELLGLSRQSL 433 Query: 89 RKKLKKYGMN 98 KL +YG + Sbjct: 434 YAKLNRYGFD 443 >UniRef50_C1A9W9 NtrC family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A9W9_GEMAT Length = 461 Score = 38.1 bits (87), Expect = 0.082, Method: Composition-based stats. Identities = 18/42 (42%), Positives = 28/42 (66%) Query: 55 LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYG 96 L +E+ + V+Q GN++RAA M+GI+ TL +KL +YG Sbjct: 416 LEAIERAYIQWVLQNEGGNKSRAADMLGIDPSTLYRKLARYG 457 >UniRef50_A8RXK4 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RXK4_9CLOT Length = 648 Score = 38.1 bits (87), Expect = 0.082, Method: Composition-based stats. Identities = 17/46 (36%), Positives = 30/46 (65%) Query: 52 ELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 E + E+ + L M+ GN+T+AA ++GI+R T+ + +KK+GM Sbjct: 602 ENISREITEECLAQAMEQAGGNKTKAARILGIHRSTIWRYIKKFGM 647 >UniRef50_Q8RE11 Acetoacetate metabolism regulatory protein atoC n=15 Tax=Fusobacterium RepID=Q8RE11_FUSNN Length = 469 Score = 38.1 bits (87), Expect = 0.086, Method: Composition-based stats. Identities = 17/44 (38%), Positives = 31/44 (70%) Query: 55 LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 L EVE+ ++ + +Q TR N+ + ++GI R TL +K++KYG++ Sbjct: 424 LEEVERVVIAIALQKTRWNKQETSKILGIGRTTLYEKIRKYGLD 467 >UniRef50_A6QAS7 Transcriptional regulator, Fis family n=1 Tax=Sulfurovum sp. NBC37-1 RepID=A6QAS7_SULNB Length = 244 Score = 38.1 bits (87), Expect = 0.090, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 46/74 (62%), Gaps = 3/74 (4%) Query: 27 LRDSVKQALKN--YFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGIN 84 +R KQ++K+ Y+ L + N+ Y+ L E+PL++ ++ G+Q + + ++GIN Sbjct: 172 IRTMDKQSIKDAVYYYMLEQMEGNNTYKEYLELYEKPLIEAGLK-KYGSQLQLSQVLGIN 230 Query: 85 RGTLRKKLKKYGMN 98 R TLRKK+ ++ ++ Sbjct: 231 RNTLRKKIHEHDID 244 >UniRef50_A4J6T1 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Bacteria RepID=A4J6T1_DESRM Length = 512 Score = 38.1 bits (87), Expect = 0.091, Method: Compositional matrix adjust. Identities = 26/96 (27%), Positives = 49/96 (51%), Gaps = 5/96 (5%) Query: 8 SDVLTVSTVNSQD--QVTQKPLRDSVKQALKNYFA---QLNGQDVNDLYELVLAEVEQPL 62 SD +V V +D Q+ Q+ L D + Y A + + + ++ L + E+E Sbjct: 414 SDATSVLNVKPEDLDQLDQQALLDLYHKVDGLYRAIHRTMGKKGITTVFPLTIQELEARA 473 Query: 63 LDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 ++ +++ GN + +A +GI R TL +K K+Y +N Sbjct: 474 IEETLEFFNGNVSMSARALGIGRNTLYRKAKEYNIN 509 >UniRef50_B5JI58 Sigma-54 interaction domain family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JI58_9BACT Length = 473 Score = 38.1 bits (87), Expect = 0.096, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 40/75 (53%) Query: 20 DQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAAL 79 ++++Q +S+ Q + + D Y+ ++ V++ L+ + + GN +A+ Sbjct: 392 EEISQPKNSESLSQIVSKFLDTSEKDQKGDAYDSIIEAVDKELISQALARSEGNLAQASR 451 Query: 80 MMGINRGTLRKKLKK 94 +G++R TLRKK+ K Sbjct: 452 WLGLSRLTLRKKISK 466 >UniRef50_P0AFB9 Nitrogen regulation protein NR(I) n=502 Tax=Bacteria RepID=NTRC_ECO57 Length = 469 Score = 38.1 bits (87), Expect = 0.096, Method: Composition-based stats. Identities = 17/41 (41%), Positives = 29/41 (70%) Query: 57 EVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 E+E+ LL +++T+G++ AA ++G R TL +KLK+ GM Sbjct: 428 ELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_D2U2K4 tRNA-dihydrouridine synthase B n=1 Tax=Arsenopho... 153 1e-36 UniRef50_A5UD91 DNA-binding protein fis n=80 Tax=Gammaproteobact... 128 7e-29 UniRef50_C4LAF3 DNA-binding protein fis n=186 Tax=Gammaproteobac... 121 6e-27 UniRef50_C0N365 Transcriptional regulator, Fis family protein n=... 116 2e-25 UniRef50_Q1QA76 Helix-turn-helix, Fis-type n=18 Tax=Moraxellacea... 114 6e-25 UniRef50_A8G0V0 DNA-binding protein fis n=30 Tax=Gammaproteobact... 114 7e-25 UniRef50_Q2P860 DNA-binding protein n=5 Tax=Xanthomonadaceae Rep... 112 3e-24 UniRef50_Q3JC89 DNA-binding protein Fis n=2 Tax=Nitrosococcus oc... 112 4e-24 UniRef50_A6SUQ0 Transcriptional regulator, Fis family n=59 Tax=B... 111 8e-24 UniRef50_P64130 Putative fis-like DNA-binding protein n=12 Tax=B... 110 2e-23 UniRef50_A5WFX3 Transcriptional regulator, Fis family n=3 Tax=Pr... 109 2e-23 UniRef50_B8GUU9 Factor for inversion stimulation Fis transcripti... 109 2e-23 UniRef50_Q057I0 DNA-bending protein n=1 Tax=Buchnera aphidicola ... 109 2e-23 UniRef50_A1WYK3 Transcriptional regulator, Fis family n=1 Tax=Ha... 109 2e-23 UniRef50_Q0AB23 Helix-turn-helix, Fis-type n=1 Tax=Alkalilimnico... 109 3e-23 UniRef50_Q15Z87 Helix-turn-helix, Fis-type n=6 Tax=Proteobacteri... 109 3e-23 UniRef50_Q87D75 Putative fis-like DNA-binding protein n=14 Tax=X... 109 3e-23 UniRef50_Q5ZY31 DNA binding protein Fis n=6 Tax=Legionella RepID... 109 4e-23 UniRef50_C1HVR1 Factor-for-inversion-stimulation protein n=13 Ta... 108 5e-23 UniRef50_B9ZKT5 Transcriptional regulator, Fis family n=2 Tax=Pr... 108 6e-23 UniRef50_A8PNI1 Nitrogen assimilation regulatory protein n=1 Tax... 108 7e-23 UniRef50_Q1QV70 DNA-binding protein Fis n=3 Tax=Gammaproteobacte... 107 1e-22 UniRef50_A4BSG3 Helix-turn-helix, Fis-type n=1 Tax=Nitrococcus m... 107 1e-22 UniRef50_C5S9C5 Transcriptional regulator, Fis family n=1 Tax=Al... 106 2e-22 UniRef50_Q0VMY6 DNA-binding protein Fis n=5 Tax=Proteobacteria R... 105 4e-22 UniRef50_B5JYA4 Transcriptional regulator, Fis family protein n=... 104 6e-22 UniRef50_Q1YVH9 DNA-binding protein Fis n=2 Tax=unclassified Gam... 104 9e-22 UniRef50_Q9HUW0 Putative fis-like DNA-binding protein n=31 Tax=G... 103 2e-21 UniRef50_Q31II7 DNA-binding protein Fis n=2 Tax=Proteobacteria R... 103 2e-21 UniRef50_Q8Y231 Putative fis-like DNA-binding protein n=10 Tax=B... 103 2e-21 UniRef50_A0Z0J4 Factor for inversion stimulation Fis, transcript... 103 2e-21 UniRef50_A9I8G0 DNA-binding protein fis n=8 Tax=Betaproteobacter... 102 5e-21 UniRef50_D0L1E4 Transcriptional regulator, Fis family n=1 Tax=Ha... 102 5e-21 UniRef50_A4A6T5 DNA-binding protein fis n=2 Tax=unclassified Gam... 101 5e-21 UniRef50_A9KGN0 DNA-binding protein fis n=5 Tax=Coxiella burneti... 101 7e-21 UniRef50_Q2YCT0 DNA-binding protein Fis n=6 Tax=Betaproteobacter... 101 1e-20 UniRef50_Q607L3 DNA-binding protein Fis n=1 Tax=Methylococcus ca... 101 1e-20 UniRef50_B5ELA9 Transcriptional regulator, Fis family n=3 Tax=Ac... 100 2e-20 UniRef50_C7R7C1 Transcriptional regulator, Fis family n=1 Tax=Ka... 98 6e-20 UniRef50_C5V629 Transcriptional regulator, Fis family n=2 Tax=Be... 98 7e-20 UniRef50_Q5FTP8 Nitrogen assimilation regulatory protein NtrC n=... 97 2e-19 UniRef50_Q475R3 DNA-binding protein Fis n=15 Tax=Betaproteobacte... 96 3e-19 UniRef50_A1B9J9 Two component, sigma54 specific, transcriptional... 96 4e-19 UniRef50_C8PZT0 DNA-binding protein for site-specific recombinat... 95 6e-19 UniRef50_B8KW02 Transcriptional regulator, Fis family protein n=... 95 7e-19 UniRef50_C7RNK7 Transcriptional regulator, Fis family n=2 Tax=Be... 95 7e-19 UniRef50_B7RVT1 Transcriptional regulator, Fis family protein n=... 95 8e-19 UniRef50_Q04848 Nitrogen assimilation regulatory protein ntrC n=... 94 1e-18 UniRef50_P09432 Nitrogen regulation protein ntrC n=20 Tax=Rhodob... 90 2e-17 UniRef50_Q0FAI5 Response regulator containing CheY-like receiver... 90 2e-17 UniRef50_A0LDW4 Nitrogen metabolism transcriptional regulator, N... 90 3e-17 UniRef50_Q1GGX2 Two component, sigma54 specific, transcriptional... 90 3e-17 UniRef50_A5IBL2 DNA-binding protein fis n=6 Tax=Legionella RepID... 89 4e-17 UniRef50_A8DVY9 Predicted protein (Fragment) n=1 Tax=Nematostell... 88 8e-17 UniRef50_Q0F179 Putative transcriptional regulator, Fis family p... 88 8e-17 UniRef50_D2LEK1 Sigma54 specific transcriptional regulator, Fis ... 88 8e-17 UniRef50_A1AXL9 Helix-turn-helix, Fis-type n=3 Tax=Bacteria RepI... 88 1e-16 UniRef50_B5YK68 Transcriptional regulator n=1 Tax=Thermodesulfov... 87 2e-16 UniRef50_A1ATK4 Two component, sigma54 specific, transcriptional... 87 2e-16 UniRef50_A5ICP8 Fis transcriptional activator n=6 Tax=Legionella... 86 3e-16 UniRef50_D2U436 Two-component system, NtrC family, nitrogen regu... 83 4e-15 UniRef50_C5TGC5 Transcriptional regulator, Fis family n=2 Tax=Zy... 82 6e-15 UniRef50_B5JH96 Sigma-54 interaction domain family n=1 Tax=Verru... 81 1e-14 UniRef50_C8N8F3 DNA-binding protein Fis n=1 Tax=Cardiobacterium ... 80 3e-14 UniRef50_D2R4P1 Two component, sigma54 specific, transcriptional... 79 4e-14 UniRef50_B9XL82 Two component, sigma54 specific, transcriptional... 79 5e-14 UniRef50_C0QUD7 Nitrogen assimilation regulatory protein n=1 Tax... 76 2e-13 UniRef50_D2MHT4 Two component, sigma54 specific, transcriptional... 76 3e-13 UniRef50_Q6MRN6 Site-specific DNA inversion stimulation factor n... 76 4e-13 UniRef50_D2R2G6 Sigma54 specific transcriptional regulator, Fis ... 76 4e-13 UniRef50_A3ZS60 Nitrogen assimilation regulatory protein n=1 Tax... 75 5e-13 UniRef50_Q7UJV2 Nitrogen regulation protein NR(I) n=1 Tax=Rhodop... 75 5e-13 UniRef50_UPI00016C4268 cetoacetate metabolism regulatory protein... 75 1e-12 UniRef50_Q2G705 Two component, sigma54 specific, transcriptional... 74 1e-12 UniRef50_D2R311 Two component, sigma54 specific, transcriptional... 74 2e-12 UniRef50_C1ZHW1 Response regulator with CheY-like receiver, AAA-... 73 2e-12 UniRef50_A3ZZY0 Nitrogen assimilation regulatory protein n=1 Tax... 73 2e-12 UniRef50_UPI00016C44AF cetoacetate metabolism regulatory protein... 73 3e-12 UniRef50_Q0C0N3 Nitrogen regulation protein NR(I) n=1 Tax=Hyphom... 73 4e-12 UniRef50_B4UAL8 Two component, sigma54 specific, transcriptional... 69 3e-11 UniRef50_A7HH93 Transcriptional regulator, Fis family n=4 Tax=An... 69 5e-11 UniRef50_A7MUF9 Putative uncharacterized protein n=4 Tax=Vibrion... 69 6e-11 UniRef50_C4XRA9 Transcriptional regulatory protein ZraR n=9 Tax=... 68 1e-10 UniRef50_Q1ITP4 Two component, sigma54 specific, transcriptional... 65 6e-10 UniRef50_D0CFR6 Predicted protein n=1 Tax=Acinetobacter baumanni... 64 1e-09 UniRef50_C6BW44 Two component, sigma54 specific, transcriptional... 60 2e-08 UniRef50_A9CI57 Transcriptional regulator n=6 Tax=Rhizobiaceae R... 60 2e-08 Sequences not found previously or not previously below threshold: UniRef50_A0LND9 Two component, sigma54 specific, transcriptional... 71 8e-12 UniRef50_C3WC23 Nitrogen assimilation regulatory protein n=5 Tax... 70 3e-11 UniRef50_A6CEU3 Acetoacetate metabolism regulatory protein atoC ... 68 7e-11 UniRef50_B5JI58 Sigma-54 interaction domain family n=1 Tax=Verru... 67 1e-10 UniRef50_Q7USH9 Nitrogen assimilation regulatory protein n=1 Tax... 66 3e-10 UniRef50_C1SGC3 Response regulator with CheY-like receiver, AAA-... 66 4e-10 UniRef50_UPI00016C50F5 nitrogen regulation protein NR(I) n=1 Tax... 65 7e-10 UniRef50_C3WJS3 Nitrogen assimilation regulatory protein n=9 Tax... 64 9e-10 UniRef50_A6C862 Nitrogen regulation protein NR(I) n=2 Tax=Planct... 64 1e-09 UniRef50_C6HWP3 Sigma54 specific transcriptional regulator, Fis ... 64 1e-09 UniRef50_B9JZ35 Transcriptional regulator n=2 Tax=Alphaproteobac... 64 2e-09 UniRef50_C1ZLR0 Response regulator with CheY-like receiver, AAA-... 63 2e-09 UniRef50_P0AFB9 Nitrogen regulation protein NR(I) n=502 Tax=Bact... 63 3e-09 UniRef50_P28787 Nitrogen regulation protein NR(I) n=29 Tax=Gamma... 63 4e-09 UniRef50_A5D511 Transcriptional regulator n=1 Tax=Pelotomaculum ... 62 6e-09 UniRef50_C1ZBV1 Response regulator with CheY-like receiver, AAA-... 61 1e-08 UniRef50_D0LIH3 Two component, sigma54 specific, transcriptional... 61 1e-08 UniRef50_A8V246 Two component, sigma54 specific, transcriptional... 61 1e-08 UniRef50_Q1K1J7 Response regulator receiver protein n=1 Tax=Desu... 60 2e-08 UniRef50_A3EPR9 Putative two component, sigma54 specific, transc... 60 2e-08 UniRef50_B5EFV3 Two component, sigma54 specific, transcriptional... 60 2e-08 UniRef50_Q02BY0 Sigma54 specific transcriptional regulator, Fis ... 59 3e-08 UniRef50_A6QAS7 Transcriptional regulator, Fis family n=1 Tax=Su... 59 3e-08 UniRef50_A5WGF4 Nitrogen metabolism transcriptional regulator, N... 59 3e-08 UniRef50_Q2LXW1 Sigma-54 dependent transcription regulator n=1 T... 59 4e-08 UniRef50_D0LYF6 Two component, sigma54 specific, transcriptional... 59 4e-08 UniRef50_A5GBB3 Two component, sigma-54 specific, transcriptiona... 59 4e-08 UniRef50_B4CX09 Sigma54 specific transcriptional regulator, Fis ... 59 5e-08 UniRef50_B9M1N5 Two component, sigma54 specific, transcriptional... 59 5e-08 UniRef50_A4IPF8 Transcriptional regulator n=6 Tax=Bacillales Rep... 59 5e-08 UniRef50_A7GG75 Sensory box sigma-54 dependent transcriptional r... 59 5e-08 UniRef50_Q1D5E1 Sigma-54 dependent transcriptional regulator, Fi... 59 5e-08 UniRef50_B5YL21 Acetoacetate metabolism regulatory protein AtoC ... 59 5e-08 UniRef50_C6IXE0 Transcriptional regulator n=1 Tax=Paenibacillus ... 59 6e-08 UniRef50_B4SRV8 Nitrogen metabolism transcriptional regulator, N... 58 7e-08 UniRef50_C8R333 Two component, sigma54 specific, transcriptional... 58 8e-08 UniRef50_C8WT15 PAS modulated sigma54 specific transcriptional r... 58 9e-08 UniRef50_A4J599 Sigma54 specific transcriptional regulator, Fis ... 58 1e-07 UniRef50_C1SGB7 Response regulator with CheY-like receiver, AAA-... 58 1e-07 UniRef50_A9FB29 Sigma-54 dependent DNA-binding response regulato... 58 1e-07 UniRef50_Q0A929 Sigma54 specific transcriptional regulator, Fis ... 58 1e-07 UniRef50_B5YI45 Transcriptional activator n=1 Tax=Thermodesulfov... 57 1e-07 UniRef50_A5L901 Putative uncharacterized protein n=1 Tax=Vibrion... 57 2e-07 UniRef50_Q8ABU5 RteB, two-component system response regulator n=... 57 2e-07 UniRef50_B6BW54 Nitrogen regulation protein n=2 Tax=Betaproteoba... 57 2e-07 UniRef50_UPI0001698811 sigma-54-dependent transcriptional regula... 57 2e-07 UniRef50_Q1Q0T6 Strongly similar to sigma 54 response regulator ... 57 2e-07 UniRef50_Q1PXP1 Strongly similar to sigma 54 response regulator ... 57 2e-07 UniRef50_Q1IVS2 Sigma54 specific transcriptional regulator, Fis ... 57 2e-07 UniRef50_Q1D5T0 Sigma-54 dependent DNA-binding reponse regulator... 57 2e-07 UniRef50_Q01VW0 Transcriptional regulator, Fis family n=1 Tax=Ca... 56 3e-07 UniRef50_A1TKJ1 Sigma54 specific transcriptional regulator, Fis ... 56 3e-07 UniRef50_Q46PB6 Helix-turn-helix, Fis-type n=7 Tax=Burkholderiac... 56 3e-07 UniRef50_Q1INE5 Two component, sigma54 specific, transcriptional... 56 3e-07 UniRef50_C6HWZ9 Probable regulatory protein, Fis family (Fragmen... 56 3e-07 UniRef50_Q2IK30 Two component, sigma54 specific, transcriptional... 56 3e-07 UniRef50_A7HBA5 Two component, sigma54 specific, transcriptional... 56 3e-07 UniRef50_B3QW87 Two component, sigma54 specific, transcriptional... 56 3e-07 UniRef50_C8QYP0 Two component, sigma54 specific, transcriptional... 56 4e-07 UniRef50_A6UCY3 Two component, sigma54 specific, transcriptional... 56 4e-07 UniRef50_B8DQ72 Two component, sigma54 specific, transcriptional... 56 4e-07 UniRef50_C7LP79 Two component, sigma54 specific, transcriptional... 56 4e-07 UniRef50_C0QAK8 Putative nitrogen assimilation regulatory protei... 56 4e-07 UniRef50_D0LSA1 Sigma54 specific transcriptional regulator, Fis ... 56 5e-07 UniRef50_Q39QH6 Sigma54 specific transcriptional regulator with ... 56 5e-07 UniRef50_Q0APQ3 Two component, sigma54 specific, transcriptional... 56 5e-07 UniRef50_D0LUW9 Sigma54 specific transcriptional regulator, Fis ... 56 5e-07 UniRef50_A4CMC3 Two component, sigma54 specific, transcriptional... 56 5e-07 UniRef50_D0LQ47 Sigma54 specific transcriptional regulator, Fis ... 56 5e-07 UniRef50_C2W7W3 Transcriptional regulator n=4 Tax=Bacillus RepID... 56 5e-07 UniRef50_B9M8I4 Two component, sigma54 specific, transcriptional... 56 5e-07 UniRef50_P17899 Transcriptional regulatory protein flbD n=24 Tax... 56 5e-07 UniRef50_C6BWX2 Two component, sigma54 specific, transcriptional... 55 5e-07 UniRef50_A3ESN7 Putative two component, sigma54 specific, transc... 55 6e-07 UniRef50_UPI00016C585F ornithine decarboxylase inhibitor-putativ... 55 6e-07 UniRef50_A9G9I4 Nif-specific regulatory protein n=2 Tax=Sorangiu... 55 6e-07 UniRef50_A0QWN8 Putative sigma 54 type regulator n=1 Tax=Mycobac... 55 6e-07 UniRef50_C6NXS5 Nitrogen metabolism transcriptional regulator, N... 55 6e-07 UniRef50_C0GH19 Sigma54 specific transcriptional regulator, Fis ... 55 6e-07 UniRef50_A6GDL8 Sigma-54 dependent transcriptional regulator, Fi... 55 6e-07 UniRef50_Q7WZ29 MmoR n=1 Tax=Methylococcus capsulatus RepID=Q7WZ... 55 6e-07 UniRef50_Q8RE11 Acetoacetate metabolism regulatory protein atoC ... 55 6e-07 UniRef50_B8FJU0 Two component, sigma54 specific, transcriptional... 55 7e-07 UniRef50_Q1PYM7 Similar to sigma 54 response regulator n=1 Tax=C... 55 7e-07 UniRef50_Q2LRK0 Bacterial regulatory protein, Fis family n=1 Tax... 55 7e-07 UniRef50_C8W252 PAS modulated sigma54 specific transcriptional r... 55 7e-07 UniRef50_Q8EMV1 Transcriptional regulator n=2 Tax=Bacillaceae Re... 55 7e-07 UniRef50_B8IYK1 Two component, sigma54 specific, transcriptional... 55 7e-07 UniRef50_B5YJY4 Response regulator HsfA n=1 Tax=Thermodesulfovib... 55 7e-07 UniRef50_B3E4E8 Putative sigma54 specific transcriptional regula... 55 7e-07 UniRef50_C8WZC4 Two component, sigma54 specific, transcriptional... 55 8e-07 UniRef50_B8J7L3 Two component, sigma54 specific, transcriptional... 55 8e-07 UniRef50_D2L1Y0 Two component, sigma54 specific, transcriptional... 55 8e-07 UniRef50_Q027R3 Two component, sigma54 specific, transcriptional... 54 9e-07 UniRef50_B0SC18 Transcriptional regulator n=7 Tax=Bacteria RepID... 54 9e-07 UniRef50_A1VHV7 Sigma54 specific transcriptional regulator, Fis ... 54 9e-07 UniRef50_A3PJU4 GAF modulated sigma54 specific transcriptional r... 54 1e-06 UniRef50_A5EVU6 Two-component response regulator PilR n=2 Tax=Ca... 54 1e-06 UniRef50_B8FL05 Two component, sigma54 specific, transcriptional... 54 1e-06 UniRef50_Q2LQP1 Transcrption factor sigma 54 type n=4 Tax=Deltap... 54 1e-06 UniRef50_D2UDB2 Probable flagellar sigma-54 dependent transcript... 54 1e-06 UniRef50_B5XUZ1 Sigma-54 dependent transcriptional regulator/ABC... 54 1e-06 UniRef50_C0GEJ3 PAS modulated sigma54 specific transcriptional r... 54 1e-06 UniRef50_Q1CWG7 Sigma-54 dependent DNA-binding response regulato... 54 1e-06 UniRef50_C5EPL2 Sigma54 specific transcriptional regulator n=3 T... 54 1e-06 UniRef50_B7R881 Sigma-54 interaction domain family protein n=3 T... 54 1e-06 UniRef50_Q8ES30 Transcriptional regulator n=1 Tax=Oceanobacillus... 54 1e-06 UniRef50_Q6MHX6 Transcriptional regulatory protein flbD n=1 Tax=... 54 1e-06 UniRef50_A0LL20 Two component, sigma54 specific, transcriptional... 54 1e-06 UniRef50_P26047 Signal-transduction and transcriptional-control ... 54 1e-06 UniRef50_Q0AVD1 Putative uncharacterized protein n=1 Tax=Syntrop... 54 1e-06 UniRef50_B8DQD3 Two component, sigma54 specific, transcriptional... 54 1e-06 UniRef50_A4J593 Sigma54 specific transcriptional regulator, Fis ... 54 2e-06 UniRef50_Q1K388 Sigma54 specific transcriptional regulator, Fis ... 54 2e-06 UniRef50_B8FXH0 PAS modulated sigma54 specific transcriptional r... 54 2e-06 UniRef50_Q3ACE2 Sigma-54 dependent transcriptional regulator n=1... 54 2e-06 UniRef50_Q1MP72 Transcriptional regulator containing GAF, AAA-ty... 54 2e-06 UniRef50_Q1D245 Sigma-54 dependent DNA-binding response regulato... 54 2e-06 UniRef50_C1SFR1 Response regulator with CheY-like receiver, AAA-... 54 2e-06 UniRef50_A1AME4 GAF modulated sigma54 specific transcriptional r... 54 2e-06 UniRef50_B8FV05 Sigma54 specific transcriptional regulator, Fis ... 54 2e-06 UniRef50_UPI0001788BCA sigma54 specific transcriptional regulato... 54 2e-06 UniRef50_B8DM67 Sigma54 specific transcriptional regulator with ... 54 2e-06 UniRef50_C6MTS9 Two component, sigma54 specific, transcriptional... 54 2e-06 UniRef50_Q1MPA8 Response regulator containing CheY-like receiver... 54 2e-06 UniRef50_C1A4S9 Fis family transcriptional regulator n=1 Tax=Gem... 54 2e-06 UniRef50_Q93KC9 AorR protein n=1 Tax=Eubacterium acidaminophilum... 54 2e-06 UniRef50_Q6SFF6 Transcriptional regulator, Fis family n=3 Tax=Ba... 54 2e-06 UniRef50_C1P9P9 PAS modulated sigma54 specific transcriptional r... 54 2e-06 UniRef50_A6G018 Two component, sigma54 specific, transcriptional... 54 2e-06 UniRef50_Q0EZK5 Transcriptional regulatory protein n=1 Tax=Marip... 53 2e-06 UniRef50_D0XNN9 Two component, sigma54 specific, transcriptional... 53 2e-06 UniRef50_C0STX4 Putative transcriptional regulator n=3 Tax=Rhodo... 53 2e-06 UniRef50_B0K4W6 GAF modulated sigma54 specific transcriptional r... 53 2e-06 UniRef50_Q2LRZ0 Sigma-54 dependent transcriptional regulator n=1... 53 2e-06 UniRef50_C0RGQ3 Transcriptional regulator, Fis family protein n=... 53 2e-06 UniRef50_B6B3N6 Transcriptional regulator PpsR n=2 Tax=Rhodobact... 53 2e-06 UniRef50_D2R5F6 PAS modulated sigma54 specific transcriptional r... 53 2e-06 UniRef50_A5CY60 Transcriptional activator of acetoin/glycerol me... 53 2e-06 UniRef50_Q3JAP9 Two component, sigma54 specific, transcriptional... 53 2e-06 UniRef50_A4J6T1 Two component, sigma54 specific, transcriptional... 53 2e-06 UniRef50_Q1JZC1 Two component, sigma54 specific, transcriptional... 53 2e-06 UniRef50_C9S255 Proprionate catabolism activator, Fis family n=2... 53 2e-06 UniRef50_A4J616 Two component, sigma54 specific, transcriptional... 53 2e-06 UniRef50_D2L943 Two component, sigma54 specific, transcriptional... 53 3e-06 UniRef50_B9JLC5 Transcriptional regulator protein n=8 Tax=Alphap... 53 3e-06 UniRef50_A6TWZ7 Sigma54 specific transcriptional regulator, Fis ... 53 3e-06 UniRef50_A6GK43 Transcriptional regulator, NifA subfamily, Fis F... 53 3e-06 UniRef50_C4XL32 NtrC family two-component response regulator n=4... 53 3e-06 UniRef50_B8FWA2 PAS modulated sigma54 specific transcriptional r... 53 3e-06 UniRef50_B5ZRP5 Transcriptional regulator, Fis family n=6 Tax=Rh... 53 3e-06 UniRef50_A7HD97 Two component, sigma54 specific, transcriptional... 53 3e-06 UniRef50_Q1D6H5 Sigma-54 dependent DNA-binding response regulato... 53 3e-06 UniRef50_B8FGV0 PAS modulated sigma54 specific transcriptional r... 53 3e-06 UniRef50_Q893M0 Putative sigma-54 interacting protein n=1 Tax=Cl... 53 3e-06 UniRef50_A9AYM8 Two component, sigma54 specific, transcriptional... 53 3e-06 UniRef50_Q4JMY3 Predicted nitrogen regulation protein VV0196 n=1... 53 3e-06 UniRef50_C1SIN5 Response regulator with CheY-like receiver, AAA-... 53 3e-06 UniRef50_B8DQ12 PAS modulated sigma54 specific transcriptional r... 53 3e-06 UniRef50_D1N7U7 Two component, sigma54 specific, transcriptional... 53 3e-06 UniRef50_Q214B6 Sigma-54 factor, interaction region n=1 Tax=Rhod... 53 3e-06 UniRef50_C0Z8K3 Probable transcriptional regulator n=1 Tax=Brevi... 53 3e-06 UniRef50_B8FEY3 Two component, sigma54 specific, transcriptional... 53 3e-06 >UniRef50_D2U2K4 tRNA-dihydrouridine synthase B n=1 Tax=Arsenophonus nasoniae RepID=D2U2K4_9ENTR Length = 458 Score = 153 bits (387), Expect = 1e-36, Method: Composition-based stats. Identities = 90/98 (91%), Positives = 95/98 (96%) Query: 1 MFEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQ 60 MFEQR NSDVLTV+T+NSQDQ+TQKPLRDSVKQALKNYFAQLN QDVNDLYELVLAEVE+ Sbjct: 361 MFEQRGNSDVLTVATINSQDQITQKPLRDSVKQALKNYFAQLNNQDVNDLYELVLAEVEK 420 Query: 61 PLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 PLLDMVMQYTRGNQTRAALM+ INRGTLRKKLKKYGMN Sbjct: 421 PLLDMVMQYTRGNQTRAALMLSINRGTLRKKLKKYGMN 458 >UniRef50_A5UD91 DNA-binding protein fis n=80 Tax=Gammaproteobacteria RepID=FIS_HAEIE Length = 99 Score = 128 bits (321), Expect = 7e-29, Method: Composition-based stats. Identities = 80/98 (81%), Positives = 88/98 (89%), Gaps = 1/98 (1%) Query: 1 MFEQRVNS-DVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVE 59 M EQ+ NS D LTVS +N+Q QVT KPLRDSVKQAL+NY AQL+GQDVNDLYELVLAEVE Sbjct: 1 MLEQQRNSADALTVSVLNAQSQVTSKPLRDSVKQALRNYLAQLDGQDVNDLYELVLAEVE 60 Query: 60 QPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 P+LDM+MQYTRGNQTRAA M+GINRGTLRKKLKKYGM Sbjct: 61 HPMLDMIMQYTRGNQTRAANMLGINRGTLRKKLKKYGM 98 >UniRef50_C4LAF3 DNA-binding protein fis n=186 Tax=Gammaproteobacteria RepID=FIS_TOLAT Length = 99 Score = 121 bits (304), Expect = 6e-27, Method: Composition-based stats. Identities = 67/99 (67%), Positives = 84/99 (84%), Gaps = 1/99 (1%) Query: 1 MFEQRVNSDVLTVSTVNSQ-DQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVE 59 M +Q + S+ L + ++Q Q Q+PLRDSV+QAL+NY AQLNGQDV +LY++VL+EVE Sbjct: 1 MLDQTLTSEALVTTVTHAQTHQPVQRPLRDSVQQALRNYLAQLNGQDVAELYDMVLSEVE 60 Query: 60 QPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 P+LD++MQYTRGNQTRAA+MMGINRGTLRKKLKKYGMN Sbjct: 61 APMLDIIMQYTRGNQTRAAIMMGINRGTLRKKLKKYGMN 99 >UniRef50_C0N365 Transcriptional regulator, Fis family protein n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N365_9GAMM Length = 96 Score = 116 bits (292), Expect = 2e-25, Method: Composition-based stats. Identities = 42/94 (44%), Positives = 60/94 (63%) Query: 4 QRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLL 63 + + D T + + + + PL D V AL +YF QL G +LY +++ EVE PLL Sbjct: 3 KPLAKDESTCAELGVAAERSTAPLSDCVSNALSDYFQQLEGHPAANLYNMLMNEVEVPLL 62 Query: 64 DMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 + +T GNQ+RAA ++GINRGTLRKKLK+YG+ Sbjct: 63 KATLDHTAGNQSRAAEILGINRGTLRKKLKQYGL 96 >UniRef50_Q1QA76 Helix-turn-helix, Fis-type n=18 Tax=Moraxellaceae RepID=Q1QA76_PSYCK Length = 118 Score = 114 bits (287), Expect = 6e-25, Method: Composition-based stats. Identities = 42/96 (43%), Positives = 64/96 (66%) Query: 2 FEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQP 61 +E+ + + V + +PLR V++ ++ YFA L + DLYEL+L E+EQP Sbjct: 22 YEEDYHRSIRNVESALDDTGHAHEPLRIHVERVVRQYFAMLGDEIPTDLYELILKEIEQP 81 Query: 62 LLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 LL +V++ +RGNQT+ A ++G+NRGTLRKKLK YG+ Sbjct: 82 LLSVVLEKSRGNQTKCAQILGLNRGTLRKKLKIYGL 117 >UniRef50_A8G0V0 DNA-binding protein fis n=30 Tax=Gammaproteobacteria RepID=FIS_SHESH Length = 101 Score = 114 bits (287), Expect = 7e-25, Method: Composition-based stats. Identities = 59/101 (58%), Positives = 81/101 (80%), Gaps = 3/101 (2%) Query: 1 MFEQRVNSD--VLTVSTVNSQDQVTQKPL-RDSVKQALKNYFAQLNGQDVNDLYELVLAE 57 MF+Q N++ LTV + + + + L RD+VK+A+ N+FAQ++GQ+ ++YE+VL+E Sbjct: 1 MFDQTTNTETHQLTVGKIETANGTIKPQLLRDAVKRAVTNFFAQMDGQEAEEVYEMVLSE 60 Query: 58 VEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 VE PLLD++MQ+TRGNQTRAA M+GINRGTLRKKLKKYGMN Sbjct: 61 VEAPLLDIIMQHTRGNQTRAANMLGINRGTLRKKLKKYGMN 101 >UniRef50_Q2P860 DNA-binding protein n=5 Tax=Xanthomonadaceae RepID=Q2P860_XANOM Length = 90 Score = 112 bits (281), Expect = 3e-24, Method: Composition-based stats. Identities = 41/85 (48%), Positives = 58/85 (68%) Query: 14 STVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGN 73 S +S + PLR+ V Q+++ Y L+G D +D+YE+VL E+E PL V+ + GN Sbjct: 6 SRPDSSRGAPKSPLREHVAQSVRRYLRDLDGSDADDVYEIVLREMEIPLFVEVLNHCEGN 65 Query: 74 QTRAALMMGINRGTLRKKLKKYGMN 98 Q+RAA M+GI+R TLRKKLK+YGM Sbjct: 66 QSRAAAMLGIHRATLRKKLKEYGMT 90 >UniRef50_Q3JC89 DNA-binding protein Fis n=2 Tax=Nitrosococcus oceani RepID=Q3JC89_NITOC Length = 108 Score = 112 bits (281), Expect = 4e-24, Method: Composition-based stats. Identities = 39/91 (42%), Positives = 60/91 (65%) Query: 8 SDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVM 67 T + ++ P+ + ++QAL YF +LNG D DLYE+V+ E+E PLL + Sbjct: 15 PARTTERKLTINEEQRNSPISECLRQALDEYFDRLNGHDPADLYEIVMKEIEPPLLQTTL 74 Query: 68 QYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 ++T GNQT+AA +G+NR TLRKKL++YG++ Sbjct: 75 KHTGGNQTKAAKFLGMNRSTLRKKLRQYGIS 105 >UniRef50_A6SUQ0 Transcriptional regulator, Fis family n=59 Tax=Betaproteobacteria RepID=A6SUQ0_JANMA Length = 126 Score = 111 bits (277), Expect = 8e-24, Method: Composition-based stats. Identities = 34/90 (37%), Positives = 59/90 (65%) Query: 8 SDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVM 67 + T N +++ +++ VK++L+ YF L Q +++YE+V+ VE+P+L+ VM Sbjct: 36 RARQIIKTRNQPSTMSKDNIQEVVKKSLEKYFKDLGEQMPSNVYEMVVFTVEKPILEAVM 95 Query: 68 QYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 + GNQ+ AA M+GINR TLRKKL+++ + Sbjct: 96 ERAEGNQSHAADMLGINRNTLRKKLQQHDL 125 >UniRef50_P64130 Putative fis-like DNA-binding protein n=12 Tax=Betaproteobacteria RepID=FISL_NEIMA Length = 79 Score = 110 bits (275), Expect = 2e-23, Method: Composition-based stats. Identities = 33/77 (42%), Positives = 53/77 (68%) Query: 21 QVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALM 80 T + ++Q L+ YF LNG + +Y++VL +VE+PLL VM+ GNQ++A++M Sbjct: 2 PHTLPDISQCIRQNLEQYFKDLNGTEPCGVYDMVLHQVEKPLLVCVMEQCGGNQSKASVM 61 Query: 81 MGINRGTLRKKLKKYGM 97 +G+NR TLRKKL ++G+ Sbjct: 62 LGLNRNTLRKKLIQHGL 78 >UniRef50_A5WFX3 Transcriptional regulator, Fis family n=3 Tax=Proteobacteria RepID=A5WFX3_PSYWF Length = 113 Score = 109 bits (274), Expect = 2e-23, Method: Composition-based stats. Identities = 37/82 (45%), Positives = 61/82 (74%) Query: 16 VNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQT 75 V+S + PLR V+QA++ YF +L G+ +LY+ +L EVE+PLL +V++ T+GNQ+ Sbjct: 31 VDSHAPQDRAPLRHHVQQAVEQYFVELEGESTTNLYQTILQEVEKPLLQVVLKQTQGNQS 90 Query: 76 RAALMMGINRGTLRKKLKKYGM 97 + A ++G+NRGTLRKK+++Y + Sbjct: 91 KTAKILGLNRGTLRKKMQQYDL 112 >UniRef50_B8GUU9 Factor for inversion stimulation Fis transcriptional activator-like protein n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GUU9_THISH Length = 86 Score = 109 bits (274), Expect = 2e-23, Method: Composition-based stats. Identities = 36/74 (48%), Positives = 59/74 (79%) Query: 25 KPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGIN 84 K L +V Q+L++YFA+L G + + L+ +V+ EVE+PLL+ V+++ GNQ++AA +G+N Sbjct: 11 KTLSLAVHQSLEDYFARLEGHEPDGLFRMVMEEVERPLLECVLRHCEGNQSKAAQYLGLN 70 Query: 85 RGTLRKKLKKYGMN 98 RGTLRKKLK++G++ Sbjct: 71 RGTLRKKLKQHGIS 84 >UniRef50_Q057I0 DNA-bending protein n=1 Tax=Buchnera aphidicola str. Cc (Cinara cedri) RepID=Q057I0_BUCCC Length = 108 Score = 109 bits (274), Expect = 2e-23, Method: Composition-based stats. Identities = 48/95 (50%), Positives = 70/95 (73%), Gaps = 1/95 (1%) Query: 1 MFEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQ 60 MF++ N+ VS + +Q++ L D VK ALKNYF +L ++ N+LY++ L+++E+ Sbjct: 1 MFKKNKNNSQFIVSKIINQEKFA-FSLEDCVKLALKNYFFKLIDKNENNLYKIFLSKIEK 59 Query: 61 PLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKY 95 PL D VMQ+TRGNQT+AA+++GINRGTLRKKL Y Sbjct: 60 PLFDSVMQFTRGNQTQAAIILGINRGTLRKKLNIY 94 >UniRef50_A1WYK3 Transcriptional regulator, Fis family n=1 Tax=Halorhodospira halophila SL1 RepID=A1WYK3_HALHL Length = 98 Score = 109 bits (274), Expect = 2e-23, Method: Composition-based stats. Identities = 42/73 (57%), Positives = 58/73 (79%) Query: 26 PLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINR 85 P+R++V +AL +YF +L+G D N LY LVL EVE PLL+ VM Y GNQTRAA ++G+NR Sbjct: 24 PIREAVTRALDDYFRELDGHDCNGLYRLVLNEVEVPLLESVMDYCSGNQTRAAQLLGLNR 83 Query: 86 GTLRKKLKKYGMN 98 TLRKKL+++G++ Sbjct: 84 ATLRKKLREHGID 96 >UniRef50_Q0AB23 Helix-turn-helix, Fis-type n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0AB23_ALHEH Length = 95 Score = 109 bits (273), Expect = 3e-23, Method: Composition-based stats. Identities = 43/94 (45%), Positives = 61/94 (64%) Query: 4 QRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLL 63 ++ + T S+ + PLR++V +AL YF QLNG D L++LV+ EVE PL+ Sbjct: 2 EQQSPAKTTNSSTGAHGNSAIAPLREAVSEALGQYFQQLNGHDCYGLHQLVMREVEVPLI 61 Query: 64 DMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 M Y GNQTRAA ++GINRGTLR+KL++Y + Sbjct: 62 QAAMDYADGNQTRAAQLLGINRGTLRRKLREYQL 95 >UniRef50_Q15Z87 Helix-turn-helix, Fis-type n=6 Tax=Proteobacteria RepID=Q15Z87_PSEA6 Length = 97 Score = 109 bits (273), Expect = 3e-23, Method: Composition-based stats. Identities = 63/98 (64%), Positives = 76/98 (77%), Gaps = 1/98 (1%) Query: 1 MFEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQ 60 MFEQ V S T T SQ Q QKPLRDSVKQA+ Y QL+ D+ +LYELV+AEVE Sbjct: 1 MFEQNVTSPFTTTVTTPSQTQ-AQKPLRDSVKQAVNKYLKQLDNTDIENLYELVMAEVEA 59 Query: 61 PLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 P+L+ +M +TRGNQTRA++M+GINRGTLRKKLK+YGMN Sbjct: 60 PMLEEIMTFTRGNQTRASIMLGINRGTLRKKLKQYGMN 97 >UniRef50_Q87D75 Putative fis-like DNA-binding protein n=14 Tax=Xanthomonadaceae RepID=FISL_XYLFT Length = 90 Score = 109 bits (273), Expect = 3e-23, Method: Composition-based stats. Identities = 39/79 (49%), Positives = 54/79 (68%) Query: 19 QDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAA 78 + PLR+ V Q ++ Y L+G D NDLY +VL E+E PLL V+ + GNQ+RAA Sbjct: 11 SRGSPKSPLREHVAQVVRRYLRDLDGCDANDLYNMVLREMEIPLLVEVLNHCEGNQSRAA 70 Query: 79 LMMGINRGTLRKKLKKYGM 97 ++GI+R TLRKKLK+YG+ Sbjct: 71 ALLGIHRATLRKKLKEYGL 89 >UniRef50_Q5ZY31 DNA binding protein Fis n=6 Tax=Legionella RepID=Q5ZY31_LEGPH Length = 93 Score = 109 bits (272), Expect = 4e-23, Method: Composition-based stats. Identities = 38/83 (45%), Positives = 60/83 (72%) Query: 13 VSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRG 72 ++T+++ T L +SV Q+++ YF++L G D DLY+ VL E+E PL VM++ + Sbjct: 1 MTTISNDAGDTTASLAESVTQSVQKYFSELKGTDPVDLYQFVLEEIETPLFRAVMEHCKY 60 Query: 73 NQTRAALMMGINRGTLRKKLKKY 95 NQ+RAA+M+GI+RGTLR KL++Y Sbjct: 61 NQSRAAIMLGISRGTLRTKLRRY 83 >UniRef50_C1HVR1 Factor-for-inversion-stimulation protein n=13 Tax=Betaproteobacteria RepID=C1HVR1_NEIGO Length = 79 Score = 108 bits (271), Expect = 5e-23, Method: Composition-based stats. Identities = 32/76 (42%), Positives = 51/76 (67%) Query: 22 VTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMM 81 + ++Q L YF LNG + +Y++VL +VE+PLL VM+ GNQ++A++M+ Sbjct: 3 PATADIAQCIEQNLNQYFKDLNGTEPCGVYDMVLHQVEKPLLVCVMEQCGGNQSKASVML 62 Query: 82 GINRGTLRKKLKKYGM 97 G+NR TLRKKL ++G+ Sbjct: 63 GLNRNTLRKKLIQHGL 78 >UniRef50_B9ZKT5 Transcriptional regulator, Fis family n=2 Tax=Proteobacteria RepID=B9ZKT5_9GAMM Length = 110 Score = 108 bits (270), Expect = 6e-23, Method: Composition-based stats. Identities = 38/71 (53%), Positives = 53/71 (74%) Query: 27 LRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRG 86 L +SV+ AL YF L+GQ +DLY LV+ EVE+PLL V++ GNQ+RAA ++G+NR Sbjct: 26 LAESVRNALDQYFETLDGQSSHDLYALVMNEVERPLLACVLERCNGNQSRAAALLGLNRA 85 Query: 87 TLRKKLKKYGM 97 TLRKKL+ +G+ Sbjct: 86 TLRKKLRAHGL 96 >UniRef50_A8PNI1 Nitrogen assimilation regulatory protein n=1 Tax=Rickettsiella grylli RepID=A8PNI1_9COXI Length = 96 Score = 108 bits (270), Expect = 7e-23, Method: Composition-based stats. Identities = 45/80 (56%), Positives = 64/80 (80%) Query: 18 SQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRA 77 + Q+PL+ V+QAL+NYF+QL+G ++LY LVLAEVE PLL++V++ TRGNQT+A Sbjct: 16 ASAGTPQQPLKTYVEQALENYFSQLDGNSPSNLYGLVLAEVESPLLEVVLRQTRGNQTKA 75 Query: 78 ALMMGINRGTLRKKLKKYGM 97 A ++GI+RGTLRKKLK+ + Sbjct: 76 AKLLGISRGTLRKKLKQCDL 95 >UniRef50_Q1QV70 DNA-binding protein Fis n=3 Tax=Gammaproteobacteria RepID=Q1QV70_CHRSD Length = 99 Score = 107 bits (268), Expect = 1e-22, Method: Composition-based stats. Identities = 47/89 (52%), Positives = 63/89 (70%) Query: 9 DVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQ 68 D T+ + Q+ LR+SV+ A++ YF L+G+ V DLY +VL EVE PLL+ VM+ Sbjct: 10 DQNTLDAGATTSPAHQQTLRESVELAMQRYFGHLDGETVTDLYAMVLTEVEVPLLEAVMR 69 Query: 69 YTRGNQTRAALMMGINRGTLRKKLKKYGM 97 Y GNQTRAA M+G+NRGTLRKKLK+Y + Sbjct: 70 YADGNQTRAADMLGLNRGTLRKKLKQYEL 98 >UniRef50_A4BSG3 Helix-turn-helix, Fis-type n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BSG3_9GAMM Length = 100 Score = 107 bits (267), Expect = 1e-22, Method: Composition-based stats. Identities = 38/73 (52%), Positives = 52/73 (71%) Query: 26 PLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINR 85 P+R V++AL+ YF +L + + LY++VL EVE PLL VM+ GN T+AA M+GINR Sbjct: 27 PIRACVREALEGYFRRLEDCECSGLYKMVLTEVEIPLLQAVMRVCSGNLTKAAQMLGINR 86 Query: 86 GTLRKKLKKYGMN 98 TLRKKL+ YG+ Sbjct: 87 STLRKKLQYYGLE 99 >UniRef50_C5S9C5 Transcriptional regulator, Fis family n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5S9C5_CHRVI Length = 102 Score = 106 bits (266), Expect = 2e-22, Method: Composition-based stats. Identities = 32/86 (37%), Positives = 57/86 (66%) Query: 13 VSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRG 72 + + D PL V+ A++ Y + G ++ DLY+LV+ EVE+PL ++V+ +T+G Sbjct: 16 ATGLAPDDHRHAAPLSQCVRAAVEAYLTNMAGHEIEDLYDLVMQEVERPLFELVLHHTQG 75 Query: 73 NQTRAALMMGINRGTLRKKLKKYGMN 98 N ++AA ++G+ R TLRK+LK +G++ Sbjct: 76 NLSQAARLLGLTRNTLRKRLKAHGID 101 >UniRef50_Q0VMY6 DNA-binding protein Fis n=5 Tax=Proteobacteria RepID=Q0VMY6_ALCBS Length = 110 Score = 105 bits (263), Expect = 4e-22, Method: Composition-based stats. Identities = 44/91 (48%), Positives = 67/91 (73%) Query: 7 NSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMV 66 ++ + T LR+ V+++L +YF QL+G+ V++LY +VLAE+E PLL+ V Sbjct: 19 TAEARKQPHLTIARSETHDTLRNCVRRSLNDYFNQLDGEAVSELYPMVLAEMEIPLLEKV 78 Query: 67 MQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 ++YTRGNQT+AA ++G+NRGTLRKKLK+YG+ Sbjct: 79 LEYTRGNQTKAAELLGLNRGTLRKKLKQYGL 109 >UniRef50_B5JYA4 Transcriptional regulator, Fis family protein n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JYA4_9GAMM Length = 77 Score = 104 bits (261), Expect = 6e-22, Method: Composition-based stats. Identities = 38/72 (52%), Positives = 52/72 (72%) Query: 25 KPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGIN 84 PLR+SV+Q +K+Y LNG+ + +Y+LV+ EVE LL VM++ NQ+ AA +GIN Sbjct: 4 APLRNSVEQVMKDYLTALNGEKPHGMYKLVVGEVEAALLKCVMEHVDHNQSHAADCLGIN 63 Query: 85 RGTLRKKLKKYG 96 RGTLRKKLK +G Sbjct: 64 RGTLRKKLKDHG 75 >UniRef50_Q1YVH9 DNA-binding protein Fis n=2 Tax=unclassified Gammaproteobacteria RepID=Q1YVH9_9GAMM Length = 93 Score = 104 bits (260), Expect = 9e-22, Method: Composition-based stats. Identities = 43/85 (50%), Positives = 61/85 (71%) Query: 13 VSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRG 72 + + Q+ L+ SV +A++ YF+ L+GQ +DLY++V+AEVE PLL VM YTR Sbjct: 8 TGSTPKDPRSKQQSLQQSVTEAMQRYFSDLDGQATHDLYDIVMAEVEPPLLKAVMAYTRQ 67 Query: 73 NQTRAALMMGINRGTLRKKLKKYGM 97 NQ+RAA +G+NRGTLRKKLK+Y + Sbjct: 68 NQSRAAETLGLNRGTLRKKLKQYDL 92 >UniRef50_Q9HUW0 Putative fis-like DNA-binding protein n=31 Tax=Gammaproteobacteria RepID=FISL_PSEAE Length = 104 Score = 103 bits (258), Expect = 2e-21, Method: Composition-based stats. Identities = 47/83 (56%), Positives = 63/83 (75%), Gaps = 3/83 (3%) Query: 15 TVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQ 74 T +Q+ T LRDSV++AL NYFA L GQ V D+Y +VL EVE PLL+ VM + +GNQ Sbjct: 24 TTPTQEGQT---LRDSVEKALHNYFAHLEGQPVTDVYNMVLCEVEAPLLETVMNHVKGNQ 80 Query: 75 TRAALMMGINRGTLRKKLKKYGM 97 T+A+ ++G+NRGTLRKKLK+Y + Sbjct: 81 TKASELLGLNRGTLRKKLKQYDL 103 >UniRef50_Q31II7 DNA-binding protein Fis n=2 Tax=Proteobacteria RepID=Q31II7_THICR Length = 87 Score = 103 bits (257), Expect = 2e-21, Method: Composition-based stats. Identities = 34/84 (40%), Positives = 55/84 (65%) Query: 15 TVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQ 74 T+ S + L V LKNYF L G+ +D+Y++V+++VE+PL++ V+ T NQ Sbjct: 2 TLLSDKNPASQALSTHVTMTLKNYFETLEGEVPSDVYQMVISQVERPLIEFVLNETAFNQ 61 Query: 75 TRAALMMGINRGTLRKKLKKYGMN 98 +R+A ++GINR TLRKK++ Y + Sbjct: 62 SRSAEILGINRNTLRKKMQLYKIT 85 >UniRef50_Q8Y231 Putative fis-like DNA-binding protein n=10 Tax=Betaproteobacteria RepID=FISL_RALSO Length = 77 Score = 103 bits (256), Expect = 2e-21, Method: Composition-based stats. Identities = 29/76 (38%), Positives = 56/76 (73%) Query: 22 VTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMM 81 +++ P+ ++ +L Y+ L+G++ +++Y++VL +E+PLL+ VM++ NQ+ AA + Sbjct: 1 MSRNPIERCIRDSLDTYYRDLDGENPSNVYDMVLQAIERPLLETVMEWASNNQSLAADYL 60 Query: 82 GINRGTLRKKLKKYGM 97 GINR TLRKKL+++G+ Sbjct: 61 GINRNTLRKKLQQHGL 76 >UniRef50_A0Z0J4 Factor for inversion stimulation Fis, transcriptional activator n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z0J4_9GAMM Length = 84 Score = 103 bits (256), Expect = 2e-21, Method: Composition-based stats. Identities = 40/82 (48%), Positives = 61/82 (74%) Query: 16 VNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQT 75 ++ V +PLR+S K+++ ++F QL+G DL+ LVLA+VE+PL VMQ T GNQ+ Sbjct: 2 TTEKNPVQPRPLRESAKESITHFFEQLDGATCTDLHALVLAQVEEPLFRAVMQETCGNQS 61 Query: 76 RAALMMGINRGTLRKKLKKYGM 97 +AA ++G+NRGTLRKKL++Y + Sbjct: 62 KAAAILGLNRGTLRKKLRQYHL 83 >UniRef50_A9I8G0 DNA-binding protein fis n=8 Tax=Betaproteobacteria RepID=A9I8G0_BORPD Length = 79 Score = 102 bits (254), Expect = 5e-21, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 51/71 (71%) Query: 27 LRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRG 86 L D V+ +L+ YF L + +D++++V+ VE+P+L++ +Q + GNQ+RA+ M+GI R Sbjct: 7 LEDCVRASLERYFEDLGESEPHDMWDMVMRCVERPVLEVALQRSGGNQSRASEMLGITRN 66 Query: 87 TLRKKLKKYGM 97 TLRKKL+ + + Sbjct: 67 TLRKKLQAHNI 77 >UniRef50_D0L1E4 Transcriptional regulator, Fis family n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0L1E4_HALNC Length = 106 Score = 102 bits (254), Expect = 5e-21, Method: Composition-based stats. Identities = 33/83 (39%), Positives = 54/83 (65%) Query: 15 TVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQ 74 +N+ + P++ +V+ AL + L G ++LY+LV+A++E+PLL+ M NQ Sbjct: 19 CLNTDEAHGDNPVQQAVRAALDALWETLEGDQPSNLYDLVIAQIERPLLETAMMRCEQNQ 78 Query: 75 TRAALMMGINRGTLRKKLKKYGM 97 +RAA +GINR TLRKKLK++ + Sbjct: 79 SRAAECLGINRSTLRKKLKQHQL 101 >UniRef50_A4A6T5 DNA-binding protein fis n=2 Tax=unclassified Gammaproteobacteria RepID=A4A6T5_9GAMM Length = 119 Score = 101 bits (253), Expect = 5e-21, Method: Composition-based stats. Identities = 39/83 (46%), Positives = 58/83 (69%) Query: 16 VNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQT 75 + + T LR++V ++ Y +++G+ D Y LVL+EVE PLL VM+YTR NQ+ Sbjct: 31 TQTSEAATVASLREAVDLFVRRYLDEMDGEMSTDFYNLVLSEVEAPLLKAVMEYTRQNQS 90 Query: 76 RAALMMGINRGTLRKKLKKYGMN 98 RA+ M+G+NRGTLRKKLK+Y ++ Sbjct: 91 RASAMLGLNRGTLRKKLKQYAID 113 >UniRef50_A9KGN0 DNA-binding protein fis n=5 Tax=Coxiella burnetii RepID=A9KGN0_COXBN Length = 103 Score = 101 bits (252), Expect = 7e-21, Method: Composition-based stats. Identities = 39/76 (51%), Positives = 61/76 (80%) Query: 23 TQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMG 82 T + SV+Q+L++YFA+L+G+D +LY +VLAE+E PLL +VM+YT+ NQ++AA ++G Sbjct: 24 TGQSFASSVQQSLQSYFARLDGEDPVNLYSMVLAEMEVPLLRVVMRYTKNNQSKAAKILG 83 Query: 83 INRGTLRKKLKKYGMN 98 ++RGTLRKKL Y ++ Sbjct: 84 LSRGTLRKKLAIYQID 99 >UniRef50_Q2YCT0 DNA-binding protein Fis n=6 Tax=Betaproteobacteria RepID=Q2YCT0_NITMU Length = 80 Score = 101 bits (251), Expect = 1e-20, Method: Composition-based stats. Identities = 30/76 (39%), Positives = 55/76 (72%) Query: 22 VTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMM 81 + + + V++ +++YF L+G+ + ++E+V+ VE+PL+++VM+ GNQTRAA ++ Sbjct: 4 INENDIARCVRKTVEDYFNDLDGEKPHAIHEMVIRSVEKPLIELVMERAGGNQTRAAELL 63 Query: 82 GINRGTLRKKLKKYGM 97 GINR TLR K+K+Y + Sbjct: 64 GINRNTLRNKMKQYQI 79 >UniRef50_Q607L3 DNA-binding protein Fis n=1 Tax=Methylococcus capsulatus RepID=Q607L3_METCA Length = 96 Score = 101 bits (251), Expect = 1e-20, Method: Composition-based stats. Identities = 34/72 (47%), Positives = 54/72 (75%) Query: 27 LRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRG 86 L + V+ AL NY +QL+G V D+Y LV+ EVE+PL+ V+++ NQTRAA ++G++R Sbjct: 25 LSEQVRAALVNYLSQLDGISVTDMYTLVMGEVERPLIRTVLEHCCHNQTRAAQLLGLSRS 84 Query: 87 TLRKKLKKYGMN 98 TLRKK++++G+ Sbjct: 85 TLRKKMQQHGIE 96 >UniRef50_B5ELA9 Transcriptional regulator, Fis family n=3 Tax=Acidithiobacillus RepID=B5ELA9_ACIF5 Length = 80 Score = 100 bits (249), Expect = 2e-20, Method: Composition-based stats. Identities = 31/76 (40%), Positives = 45/76 (59%) Query: 23 TQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMG 82 T L D V + Y A L G+ +L+ L++ EVE+ LL +Q+ G + AA +G Sbjct: 4 TNMSLGDCVIHVMDRYLADLGGEVPGNLHALIVEEVERALLAHTLQHCGGQRGMAAQWLG 63 Query: 83 INRGTLRKKLKKYGMN 98 INR TLRKKL+ YG++ Sbjct: 64 INRNTLRKKLQTYGLD 79 >UniRef50_C7R7C1 Transcriptional regulator, Fis family n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7R7C1_KANKD Length = 101 Score = 98.4 bits (244), Expect = 6e-20, Method: Composition-based stats. Identities = 40/98 (40%), Positives = 67/98 (68%), Gaps = 1/98 (1%) Query: 1 MFEQRVNSDVLTV-STVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVE 59 +F+ + + + V+ + LR+ V +++NY Q++GQ ++++Y+LVL +VE Sbjct: 3 IFDTNLTRESNNQDNPVDGNSFASNPTLREHVAMSMQNYLKQMHGQPLSEVYDLVLTQVE 62 Query: 60 QPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 +PLL +M YTR NQT+AA ++G+NRGTLRKKLK+Y + Sbjct: 63 EPLLRAIMDYTRNNQTKAAQVLGLNRGTLRKKLKRYNL 100 >UniRef50_C5V629 Transcriptional regulator, Fis family n=2 Tax=Betaproteobacteria RepID=C5V629_9PROT Length = 81 Score = 98.0 bits (243), Expect = 7e-20, Method: Composition-based stats. Identities = 33/80 (41%), Positives = 55/80 (68%), Gaps = 1/80 (1%) Query: 20 DQVTQKPLRDSVKQALKNYFAQLNGQDVN-DLYELVLAEVEQPLLDMVMQYTRGNQTRAA 78 + + + V+QAL YF+ L+G++ D+Y++V+ VE+PL++MV+ GNQ+RA+ Sbjct: 2 SAINENEMARYVRQALSEYFSDLDGEEPGCDVYDMVMNCVEKPLVEMVLAQVGGNQSRAS 61 Query: 79 LMMGINRGTLRKKLKKYGMN 98 M+GINR TLRKK+ +G+ Sbjct: 62 AMLGINRNTLRKKMLLHGIE 81 >UniRef50_Q5FTP8 Nitrogen assimilation regulatory protein NtrC n=1 Tax=Gluconobacter oxydans RepID=Q5FTP8_GLUOX Length = 246 Score = 96.8 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 31/97 (31%), Positives = 55/97 (56%), Gaps = 2/97 (2%) Query: 4 QRVNSDVLTVSTVNSQDQVTQKP--LRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQP 61 QR+ + ++ + T +P L ++++ L Y DL+ V+ EVE+P Sbjct: 143 QRLGPERISAVCRLAAGTGTARPRGLERALERPLAEYLEGDLENGAGDLHACVVGEVERP 202 Query: 62 LLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 L+ MV++ T GNQ RAA ++G+NR TLRK++++ + Sbjct: 203 LITMVLRRTCGNQLRAAAILGVNRNTLRKRIRELDIT 239 >UniRef50_Q475R3 DNA-binding protein Fis n=15 Tax=Betaproteobacteria RepID=Q475R3_RALEJ Length = 77 Score = 96.1 bits (238), Expect = 3e-19, Method: Composition-based stats. Identities = 30/76 (39%), Positives = 52/76 (68%) Query: 22 VTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMM 81 +++ + ++ +L +YF L+G++ +++Y +VL VE+PLL+ VM NQ+ AA + Sbjct: 1 MSRNAIDQCIRDSLDSYFRDLDGEEPSNMYNMVLEAVERPLLEAVMVRAERNQSLAAAYL 60 Query: 82 GINRGTLRKKLKKYGM 97 GINR TLRKKL+ +G+ Sbjct: 61 GINRNTLRKKLQLHGL 76 >UniRef50_A1B9J9 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Rhodobacteraceae RepID=A1B9J9_PARDP Length = 485 Score = 96.1 bits (238), Expect = 4e-19, Method: Composition-based stats. Identities = 33/81 (40%), Positives = 47/81 (58%), Gaps = 3/81 (3%) Query: 20 DQVTQKPLRDSVKQALKNYFAQLNGQD--VNDLYELVLAEVEQPLLDMVMQYTRGNQTRA 77 + L SV+ L+ YF L+G D LY+ +L E+E+PLL++ + T GNQ R Sbjct: 398 GEPANMRLAQSVEMHLQRYF-DLHGDDLPPPGLYDRILREIEKPLLEIALDATGGNQLRC 456 Query: 78 ALMMGINRGTLRKKLKKYGMN 98 A ++GINR TLRKKL + Sbjct: 457 ADLLGINRNTLRKKLTDLNIE 477 >UniRef50_C8PZT0 DNA-binding protein for site-specific recombination, transcription of rRNA and tRNA operons and DNA replication n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PZT0_9GAMM Length = 109 Score = 94.9 bits (235), Expect = 6e-19, Method: Composition-based stats. Identities = 33/84 (39%), Positives = 53/84 (63%) Query: 14 STVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGN 73 +T L ++ ++ YF L Q LYEL+L++ E+PL+ +V+++TRGN Sbjct: 25 TTHTPSQTSPSASLAHHIELVVREYFDNLKEQQPTQLYELMLSQFEKPLISVVLEHTRGN 84 Query: 74 QTRAALMMGINRGTLRKKLKKYGM 97 QT+ A ++G+NRGTLRKKLK + + Sbjct: 85 QTKTAEILGLNRGTLRKKLKTHQL 108 >UniRef50_B8KW02 Transcriptional regulator, Fis family protein n=1 Tax=gamma proteobacterium NOR51-B RepID=B8KW02_9GAMM Length = 93 Score = 94.9 bits (235), Expect = 7e-19, Method: Composition-based stats. Identities = 38/72 (52%), Positives = 54/72 (75%) Query: 26 PLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINR 85 PLRDS ++A+K Y L+G+ D++ LV+A+VE+PLL VM Y NQ RAA M+G++R Sbjct: 11 PLRDSAQKAIKAYLETLDGEQPTDVFALVIAQVEEPLLAEVMAYVSNNQCRAAEMLGLSR 70 Query: 86 GTLRKKLKKYGM 97 GTLRKKL++Y + Sbjct: 71 GTLRKKLRQYQL 82 >UniRef50_C7RNK7 Transcriptional regulator, Fis family n=2 Tax=Betaproteobacteria RepID=C7RNK7_9PROT Length = 81 Score = 94.9 bits (235), Expect = 7e-19, Method: Composition-based stats. Identities = 32/68 (47%), Positives = 50/68 (73%) Query: 30 SVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLR 89 V +AL++YF L+G+ +YE+V+ VE+P+L++V++ RGNQT AA ++GINR TLR Sbjct: 12 CVGKALESYFETLDGEKPAAVYEMVIKMVERPMLEVVLKQARGNQTLAAEILGINRNTLR 71 Query: 90 KKLKKYGM 97 KKL + + Sbjct: 72 KKLIDHKL 79 >UniRef50_B7RVT1 Transcriptional regulator, Fis family protein n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RVT1_9GAMM Length = 105 Score = 94.5 bits (234), Expect = 8e-19, Method: Composition-based stats. Identities = 39/71 (54%), Positives = 59/71 (83%) Query: 27 LRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRG 86 LR++V +++ Y A+L+GQ D+Y++VLAE+E PLL+ +M YTR NQT+A++M+G+NRG Sbjct: 30 LRNAVTASVRKYLAELDGQLSTDVYQMVLAEMEAPLLEEIMAYTRNNQTKASIMLGLNRG 89 Query: 87 TLRKKLKKYGM 97 TLRKKLK+Y + Sbjct: 90 TLRKKLKQYQL 100 >UniRef50_Q04848 Nitrogen assimilation regulatory protein ntrC n=122 Tax=Alphaproteobacteria RepID=NTRC_AZOC5 Length = 480 Score = 94.1 bits (233), Expect = 1e-18, Method: Composition-based stats. Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 1/86 (1%) Query: 13 VSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQ-DVNDLYELVLAEVEQPLLDMVMQYTR 71 + S+D L SV++ L YF+ LY +L +VE PLL + TR Sbjct: 388 APSALSEDGPVDATLGASVERHLNGYFSGFGEDLPPPGLYHRILRDVEYPLLSAALAATR 447 Query: 72 GNQTRAALMMGINRGTLRKKLKKYGM 97 GNQ +AA ++G+NR TLRKK++ + Sbjct: 448 GNQIKAAELLGLNRNTLRKKIRDLDI 473 >UniRef50_P09432 Nitrogen regulation protein ntrC n=20 Tax=Rhodobacterales RepID=NTRC_RHOCA Length = 457 Score = 90.3 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 1/74 (1%) Query: 25 KPLRDSVKQALKNYFAQLNGQ-DVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGI 83 + L S+ + L+ YF G LY+ +LAE+E PL+++ + T GNQ + A ++GI Sbjct: 375 EKLSASIARHLRRYFDLHGGNLPPPGLYDRILAEMEAPLIEIALDATGGNQAKCADLLGI 434 Query: 84 NRGTLRKKLKKYGM 97 NR TLRKK+ + Sbjct: 435 NRNTLRKKITDLDI 448 >UniRef50_Q0FAI5 Response regulator containing CheY-like receiver n=8 Tax=Rhodobacterales RepID=Q0FAI5_9RHOB Length = 465 Score = 89.9 bits (222), Expect = 2e-17, Method: Composition-based stats. Identities = 32/88 (36%), Positives = 53/88 (60%), Gaps = 4/88 (4%) Query: 13 VSTVNSQD-QVTQKPLRDSVKQALKNYFAQLNGQ--DVNDLYELVLAEVEQPLLDMVMQY 69 + ++NS D + L SV++ +K YF L+G+ LY ++ E+E PL+ + + Sbjct: 370 IPSMNSDDLDTSNGKLSSSVERHIKRYF-DLHGETLPPPGLYNRIMKEIELPLIALSLSA 428 Query: 70 TRGNQTRAALMMGINRGTLRKKLKKYGM 97 TRGNQ + + ++GINR TLRKK+K + Sbjct: 429 TRGNQIKTSELLGINRNTLRKKIKDLDI 456 >UniRef50_A0LDW4 Nitrogen metabolism transcriptional regulator, NtrC, Fis Family n=3 Tax=Proteobacteria RepID=A0LDW4_MAGSM Length = 504 Score = 89.5 bits (221), Expect = 3e-17, Method: Composition-based stats. Identities = 30/81 (37%), Positives = 51/81 (62%) Query: 18 SQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRA 77 S + T + Q L +FA + G + + +Y++VL ++E L+ V++ TRGN+ +A Sbjct: 423 STESNTSHSYEAILLQDLDTFFATMGGLETSGVYDMVLRKMEAVLIPRVLRQTRGNRVKA 482 Query: 78 ALMMGINRGTLRKKLKKYGMN 98 A ++GINR TLRKK++ GM+ Sbjct: 483 AQILGINRNTLRKKMRDLGMD 503 >UniRef50_Q1GGX2 Two component, sigma54 specific, transcriptional regulator, Fis family n=19 Tax=Bacteria RepID=Q1GGX2_SILST Length = 459 Score = 89.5 bits (221), Expect = 3e-17, Method: Composition-based stats. Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 3/81 (3%) Query: 20 DQVTQKPLRDSVKQALKNYFAQLNGQ--DVNDLYELVLAEVEQPLLDMVMQYTRGNQTRA 77 + + L +SV + L+ YF L+G LY +L EVE PL+++ + T GNQ + Sbjct: 372 GGASNEKLSESVARHLQRYF-DLHGDMLPPPGLYARLLREVEAPLIEISLAATGGNQAKC 430 Query: 78 ALMMGINRGTLRKKLKKYGMN 98 A ++GINR TLRKK+ + Sbjct: 431 ADLLGINRNTLRKKITDLDIE 451 >UniRef50_A5IBL2 DNA-binding protein fis n=6 Tax=Legionella RepID=A5IBL2_LEGPC Length = 98 Score = 89.1 bits (220), Expect = 4e-17, Method: Composition-based stats. Identities = 35/82 (42%), Positives = 56/82 (68%) Query: 14 STVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGN 73 + +Q ++ L+D V + + A+ + +NDLY+++L+EVE PLL VM+ RGN Sbjct: 6 TQATTQSTKQEQGLQDLVYSLVTRFLAENKSKSINDLYDMILSEVEPPLLQAVMEKRRGN 65 Query: 74 QTRAALMMGINRGTLRKKLKKY 95 Q +AA M+GI+RGT+RKKL++Y Sbjct: 66 QLQAAKMLGISRGTIRKKLQRY 87 >UniRef50_A8DVY9 Predicted protein (Fragment) n=1 Tax=Nematostella vectensis RepID=A8DVY9_NEMVE Length = 368 Score = 88.0 bits (217), Expect = 8e-17, Method: Composition-based stats. Identities = 31/76 (40%), Positives = 45/76 (59%), Gaps = 1/76 (1%) Query: 23 TQKPLRDSVKQALKNYFAQL-NGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMM 81 T L +V+ L ++F+ NG LY +L E+E PLL + TRGNQ RAA ++ Sbjct: 84 TVDNLGGAVETYLSSHFSSFPNGVPPPGLYHRILREIEVPLLTAALAATRGNQIRAADLL 143 Query: 82 GINRGTLRKKLKKYGM 97 G+NR TLRKK++ + Sbjct: 144 GLNRNTLRKKIRDLDI 159 >UniRef50_Q0F179 Putative transcriptional regulator, Fis family protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F179_9PROT Length = 465 Score = 88.0 bits (217), Expect = 8e-17, Method: Composition-based stats. Identities = 26/75 (34%), Positives = 46/75 (61%) Query: 24 QKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGI 83 ++ L D+V + + Y QL +L++ +L ++E PLL + ++ GNQ + + M+G+ Sbjct: 386 EETLADAVTRCTRQYLHQLGYASATNLHQHLLEQIEPPLLVLALEQCNGNQLKVSEMLGL 445 Query: 84 NRGTLRKKLKKYGMN 98 NR T+RK L KY +N Sbjct: 446 NRNTVRKLLNKYNIN 460 >UniRef50_D2LEK1 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LEK1_RHOVA Length = 335 Score = 88.0 bits (217), Expect = 8e-17, Method: Composition-based stats. Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%) Query: 21 QVTQKPLRDSVKQALKNYFAQLNGQ-DVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAAL 79 Q L + ++ L +YF Q LY+ VL +VE PL+ + TRGNQ +AA Sbjct: 251 QSGTAKLNEWMEAYLTDYFGGFGDQLPPPGLYDRVLRDVEAPLITAALTATRGNQIKAAE 310 Query: 80 MMGINRGTLRKKLKKYGM 97 ++G+NR TLRKK+++ + Sbjct: 311 LLGLNRNTLRKKVREQKI 328 >UniRef50_A1AXL9 Helix-turn-helix, Fis-type n=3 Tax=Bacteria RepID=A1AXL9_RUTMC Length = 76 Score = 87.6 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 23/76 (30%), Positives = 49/76 (64%) Query: 22 VTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMM 81 ++ L + LK YF QL+G+ + ++++++ VE ++ V+ + + NQ+ A+ ++ Sbjct: 1 MSSTDLPTCINAKLKRYFKQLDGEQASGVHKMIINNVESIVIKFVLDFVKNNQSEASRIL 60 Query: 82 GINRGTLRKKLKKYGM 97 INRGTL+KK+++Y + Sbjct: 61 SINRGTLKKKIQRYKL 76 >UniRef50_B5YK68 Transcriptional regulator n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YK68_THEYD Length = 300 Score = 86.8 bits (214), Expect = 2e-16, Method: Composition-based stats. Identities = 29/74 (39%), Positives = 44/74 (59%) Query: 24 QKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGI 83 Q +R+ ++ L N + ++LYE V+ EVE+ L + + T GNQ +AA ++GI Sbjct: 226 QFSIRNFLELKLGNLLKEFANIGNSNLYETVIQEVEKALFILAINETGGNQVKAAKILGI 285 Query: 84 NRGTLRKKLKKYGM 97 NR TL KKLK Y + Sbjct: 286 NRNTLNKKLKYYSL 299 >UniRef50_A1ATK4 Two component, sigma54 specific, transcriptional regulator, Fis family n=12 Tax=Deltaproteobacteria RepID=A1ATK4_PELPD Length = 480 Score = 86.8 bits (214), Expect = 2e-16, Method: Composition-based stats. Identities = 26/81 (32%), Positives = 45/81 (55%) Query: 18 SQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRA 77 + L V+ L++ + D +D++ VL +VE+PL+ +++ TR NQ +A Sbjct: 396 TAMTPQDASLEAIVEAKLRSCLTGIEKLDKSDIHAKVLQQVERPLIRFILEKTRWNQVKA 455 Query: 78 ALMMGINRGTLRKKLKKYGMN 98 A ++GINR TLRKK+ + Sbjct: 456 ADILGINRNTLRKKIHDLEIE 476 >UniRef50_A5ICP8 Fis transcriptional activator n=6 Tax=Legionella RepID=A5ICP8_LEGPC Length = 95 Score = 86.1 bits (212), Expect = 3e-16, Method: Composition-based stats. Identities = 36/84 (42%), Positives = 52/84 (61%), Gaps = 1/84 (1%) Query: 13 VSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVN-DLYELVLAEVEQPLLDMVMQYTR 71 +S V Q L V A+K Y + +D N +LY+L++ EVE PL VM+ TR Sbjct: 1 MSAVMQQVTQGNDALSHQVISAVKGYLTSVGSKDANLNLYQLIVEEVEAPLFRTVMELTR 60 Query: 72 GNQTRAALMMGINRGTLRKKLKKY 95 NQ++AA ++G++RGTLR KLK+Y Sbjct: 61 YNQSKAARVLGVSRGTLRTKLKRY 84 >UniRef50_D2U436 Two-component system, NtrC family, nitrogen regulation response regulator n=2 Tax=Proteobacteria RepID=D2U436_9ENTR Length = 475 Score = 82.6 bits (203), Expect = 4e-15, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 50/85 (58%), Gaps = 8/85 (9%) Query: 14 STVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGN 73 T+ + ++ PL + K AL+N + +L + VL ++E+ +L+ + YT+G+ Sbjct: 399 KTLATNNEKWLDPLANWTKTALEN--------NKQNLLQQVLPQIERTMLECALTYTKGH 450 Query: 74 QTRAALMMGINRGTLRKKLKKYGMN 98 + AA ++G R TL +KLK++GM+ Sbjct: 451 KQEAARLLGWGRNTLTRKLKEFGMS 475 >UniRef50_C5TGC5 Transcriptional regulator, Fis family n=2 Tax=Zymomonas mobilis RepID=C5TGC5_ZYMMO Length = 104 Score = 81.8 bits (201), Expect = 6e-15, Method: Composition-based stats. Identities = 30/76 (39%), Positives = 47/76 (61%), Gaps = 2/76 (2%) Query: 22 VTQKPLRDSVKQALKNYFAQLNGQDVND-LYELVLAEVEQPLLDMVMQYTRGNQTRAALM 80 V + L D+++ L YFA D L+E +L EVE+PLL + ++ GN+ +AA + Sbjct: 23 VPEHGLADAMEAHLLYYFAVFGESLPPDGLWEHILGEVEKPLLKVALRAVGGNRIKAAKL 82 Query: 81 MGINRGTLRKK-LKKY 95 +GINR TLR+K L ++ Sbjct: 83 LGINRNTLRQKCLNRH 98 >UniRef50_B5JH96 Sigma-54 interaction domain family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JH96_9BACT Length = 515 Score = 80.7 bits (198), Expect = 1e-14, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 49/91 (53%), Gaps = 4/91 (4%) Query: 9 DVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYEL----VLAEVEQPLLD 64 + + +S+++ + PL S+ + + + + ++L E +L +E+ +++ Sbjct: 422 PQASAAETDSKEEPVEAPLATSIPEPMPISLPAIYDKLYHELRERQEMRILTLIERQMIE 481 Query: 65 MVMQYTRGNQTRAALMMGINRGTLRKKLKKY 95 + T GNQ RAA ++GI R TL+K+L +Y Sbjct: 482 RAIGETGGNQARAAEILGITRNTLKKRLDEY 512 >UniRef50_C8N8F3 DNA-binding protein Fis n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8N8F3_9GAMM Length = 85 Score = 79.5 bits (195), Expect = 3e-14, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 46/74 (62%), Gaps = 2/74 (2%) Query: 26 PLRDSVKQALKNYFAQLNGQD--VNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGI 83 +R +++ ++ Y+A D + LY+L+++E E ++ +MQ R NQ+ AA ++GI Sbjct: 5 TIRAAIEHSIAEYYALHENHDERITGLYDLIISEAEHAIISHIMQRCRDNQSHAARILGI 64 Query: 84 NRGTLRKKLKKYGM 97 R TL+KKL ++ + Sbjct: 65 TRNTLKKKLTQHRI 78 >UniRef50_D2R4P1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R4P1_9PLAN Length = 469 Score = 79.1 bits (194), Expect = 4e-14, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 7/90 (7%) Query: 8 SDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVM 67 +T + +DQ+T + LR+ +K + +LYE +L VE PLL+ V+ Sbjct: 381 PRTSPANTGDERDQITTR-LREWALARVK------EAGETGELYEELLKLVEPPLLEAVL 433 Query: 68 QYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 + +G AA ++G++R T+RKK+ +YG+ Sbjct: 434 KKCKGQCATAARILGMHRTTVRKKIDEYGL 463 >UniRef50_B9XL82 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=bacterium Ellin514 RepID=B9XL82_9BACT Length = 476 Score = 78.7 bits (193), Expect = 5e-14, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 47/94 (50%) Query: 5 RVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLD 64 R + V V ++ S+ + Y ++ ++ ++ V+ EVE+ L Sbjct: 375 RYTISIEHVREVVAKVGEAVAGGNQSIAAGIGTYLSRARRGEMEGVHATVIEEVERELFG 434 Query: 65 MVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 ++ +GNQ +AA +G++R T+R+KL +G++ Sbjct: 435 QAIELAQGNQAKAARWLGVSRITMREKLNHFGLH 468 >UniRef50_C0QUD7 Nitrogen assimilation regulatory protein n=1 Tax=Persephonella marina EX-H1 RepID=C0QUD7_PERMH Length = 456 Score = 76.4 bits (187), Expect = 2e-13, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 57/91 (62%), Gaps = 6/91 (6%) Query: 9 DVLTVSTVNSQDQVTQKP-LRDSVKQALKNY-FAQLNGQDVNDLYELVLAEVEQPLLDMV 66 ++LTV+ + + KP + D+ ++ LKN A L + ++ E ++++ ++ Sbjct: 370 NILTVNDLTFLREKRVKPQIEDNFEEILKNRVLASLEEGSIEEIKE----KIDKIIVQTA 425 Query: 67 MQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 ++YT+ NQ +A+ ++GINR TLRKK++KYG+ Sbjct: 426 LEYTKHNQVKASQLLGINRATLRKKIQKYGL 456 >UniRef50_D2MHT4 Two component, sigma54 specific, transcriptional regulator, Fis family (Fragment) n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MHT4_9BACT Length = 139 Score = 76.0 bits (186), Expect = 3e-13, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 6/85 (7%) Query: 13 VSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRG 72 +S + D L+ V+Q +++ + +LY + E+PL +V+ +T G Sbjct: 60 ISEPGNLDAKIHALLQVHVEQCMES------DAPLGELYTEIRETFEKPLFKIVLAHTNG 113 Query: 73 NQTRAALMMGINRGTLRKKLKKYGM 97 N+++AA ++GINR TL KL +Y + Sbjct: 114 NRSKAAEILGINRNTLHTKLVEYKL 138 >UniRef50_Q6MRN6 Site-specific DNA inversion stimulation factor n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MRN6_BDEBA Length = 99 Score = 75.7 bits (185), Expect = 4e-13, Method: Composition-based stats. Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 2/74 (2%) Query: 26 PLRDSVKQALKNYFAQLNGQ--DVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGI 83 L VK L+ FAQ ++N LY +VL +VE+PLL++ ++ GNQ + A M+GI Sbjct: 20 SLEKLVKSKLEVLFAQQKEAQVELNGLYNVVLEQVEKPLLELALRAYNGNQVKTAQMLGI 79 Query: 84 NRGTLRKKLKKYGM 97 NR TL+KK+ Y + Sbjct: 80 NRNTLKKKIDNYKI 93 >UniRef50_D2R2G6 Sigma54 specific transcriptional regulator, Fis family n=3 Tax=Planctomycetaceae RepID=D2R2G6_9PLAN Length = 354 Score = 75.7 bits (185), Expect = 4e-13, Method: Composition-based stats. Identities = 26/54 (48%), Positives = 35/54 (64%) Query: 45 QDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 D LYE V+ +VE+ L+ VMQ G QT+AA +GINR TLR KL++Y + Sbjct: 297 SDETKLYERVVNKVERELIVQVMQACGGVQTKAATKLGINRNTLRNKLQEYNLE 350 >UniRef50_A3ZS60 Nitrogen assimilation regulatory protein n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZS60_9PLAN Length = 479 Score = 75.3 bits (184), Expect = 5e-13, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 38/65 (58%) Query: 34 ALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLK 93 A + QL + D+Y L +E LL V+ T GNQ++AA+++GI RG+LR K++ Sbjct: 406 AFDVFLGQLESRGSEDMYAESLEWMEHRLLSFVLDKTAGNQSKAAVLLGITRGSLRHKMR 465 Query: 94 KYGMN 98 G+ Sbjct: 466 ALGIT 470 >UniRef50_Q7UJV2 Nitrogen regulation protein NR(I) n=1 Tax=Rhodopirellula baltica RepID=Q7UJV2_RHOBA Length = 470 Score = 75.3 bits (184), Expect = 5e-13, Method: Composition-based stats. Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 6/75 (8%) Query: 24 QKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGI 83 +K +R + A++ D L+ LA E LL VM++T GN+ +AA M+GI Sbjct: 400 EKSIRVWSENAIEA------NPDSVTLHSDYLAATEPTLLRTVMKHTGGNRAKAAEMLGI 453 Query: 84 NRGTLRKKLKKYGMN 98 +RGTLR ++K YG++ Sbjct: 454 HRGTLRDRMKAYGID 468 >UniRef50_UPI00016C4268 cetoacetate metabolism regulatory protein atoC n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C4268 Length = 475 Score = 74.5 bits (182), Expect = 1e-12, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 4/90 (4%) Query: 8 SDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVM 67 L S ++ P R + Q ++ + +L E E+++ LL MVM Sbjct: 380 PSALADMAGPSAAPASEPPARADLHQFVRRRLSD----GSENLLEEARLELDRFLLPMVM 435 Query: 68 QYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 + TRGNQ RAA ++G+ R TLR++L + G+ Sbjct: 436 ELTRGNQVRAARVLGVARLTLRRRLHELGI 465 >UniRef50_Q2G705 Two component, sigma54 specific, transcriptional regulator, Fis family n=6 Tax=cellular organisms RepID=Q2G705_NOVAD Length = 477 Score = 74.1 bits (181), Expect = 1e-12, Method: Composition-based stats. Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 5/96 (5%) Query: 3 EQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPL 62 E + + + + D+ L +V L ++Y+ LA E+PL Sbjct: 379 EPLLAQEATGAARSSESDERRPSDLASAVAAWLSA-----QNLQPGEVYDAALAAFERPL 433 Query: 63 LDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 ++ T GNQ RAA ++GINR TLRK+L + Sbjct: 434 FLQILALTGGNQLRAAQILGINRNTLRKRLSDLNIT 469 >UniRef50_D2R311 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R311_9PLAN Length = 511 Score = 73.7 bits (180), Expect = 2e-12, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 43/70 (61%) Query: 28 RDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGT 87 ++ +++ A + NDLY +AE+E+ ++ +V++ T+GN AA ++GI RG+ Sbjct: 412 SEATTTHWRSFVADHVFHEKNDLYADAIAEMERQVIALVLEETKGNIAHAARLLGITRGS 471 Query: 88 LRKKLKKYGM 97 LRKK + + + Sbjct: 472 LRKKARTHDL 481 >UniRef50_C1ZHW1 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZHW1_PLALI Length = 350 Score = 73.3 bits (179), Expect = 2e-12, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 35/55 (63%) Query: 44 GQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 G+D + Y+ V+ VE+ L+ V++ +G QT+AA +GINR TL KK+ Y + Sbjct: 292 GEDCTNAYDRVVTLVEKELILQVLRTCQGVQTKAATKLGINRNTLHKKITDYHLE 346 >UniRef50_A3ZZY0 Nitrogen assimilation regulatory protein n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZZY0_9PLAN Length = 477 Score = 73.3 bits (179), Expect = 2e-12, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 44/80 (55%) Query: 19 QDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAA 78 ++ + +++ +++ + ND+Y + E+E+ L+ ++++ T GNQ AA Sbjct: 390 REHGVDRTHGEALDTNWEHFVDERISSKSNDIYSEAVIEMERHLISLILRQTGGNQAHAA 449 Query: 79 LMMGINRGTLRKKLKKYGMN 98 ++GI R +LRKK+ G+ Sbjct: 450 RLLGITRTSLRKKINYLGLE 469 >UniRef50_UPI00016C44AF cetoacetate metabolism regulatory protein atoC n=5 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C44AF Length = 490 Score = 73.0 bits (178), Expect = 3e-12, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 2/89 (2%) Query: 9 DVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQ 68 +V+T + + + P D+++ L L D+Y V V++ LL V++ Sbjct: 378 EVITPDCLPASLRGAAAPPGDALE--LTALITSLLRVGATDIYRQVTHTVDRALLTAVLE 435 Query: 69 YTRGNQTRAALMMGINRGTLRKKLKKYGM 97 + GNQ +AA +GI+R TLR KL+ G+ Sbjct: 436 HVHGNQKQAADRLGISRTTLRAKLQTLGL 464 >UniRef50_Q0C0N3 Nitrogen regulation protein NR(I) n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0C0N3_HYPNA Length = 457 Score = 72.6 bits (177), Expect = 4e-12, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 41/74 (55%) Query: 24 QKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGI 83 + + + + + + ++++E V+ VE+PL+ + + T GN+ RAA ++G+ Sbjct: 381 EAEIEGLLHRYVMGDLVSGGEGEGSNVHESVVNRVERPLIRLALSVTSGNKVRAAQLLGM 440 Query: 84 NRGTLRKKLKKYGM 97 NR TLR K+ G+ Sbjct: 441 NRNTLRAKINALGI 454 >UniRef50_A0LND9 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Deltaproteobacteria RepID=A0LND9_SYNFM Length = 483 Score = 71.4 bits (174), Expect = 8e-12, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 38/66 (57%) Query: 31 VKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRK 90 V++ L+ L ++E ++ VE+ LL V++ NQ +AA ++G++R TLR Sbjct: 412 VERKLEELIPDLLQVGGEAMHESIIDMVERILLSKVLEQCGNNQVKAARVLGVSRNTLRH 471 Query: 91 KLKKYG 96 ++KK+ Sbjct: 472 RMKKFD 477 >UniRef50_C3WC23 Nitrogen assimilation regulatory protein n=5 Tax=Fusobacterium RepID=C3WC23_FUSMR Length = 466 Score = 69.9 bits (170), Expect = 3e-11, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 47/95 (49%), Gaps = 4/95 (4%) Query: 4 QRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLL 63 + + S+VL + + L++ +K + Y + D Y ++++VE+ L+ Sbjct: 376 EDLPSNVLGTKITKKKGEGQIYDLKEWIKSEIMEY----KNNNQMDYYGNIISKVEKELI 431 Query: 64 DMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 V++ T G + A ++GI R TLR K+ YG+ Sbjct: 432 RQVLEMTNGKKVETAEILGITRNTLRTKMSNYGLE 466 >UniRef50_B4UAL8 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Anaeromyxobacter RepID=B4UAL8_ANASK Length = 461 Score = 69.5 bits (169), Expect = 3e-11, Method: Composition-based stats. Identities = 22/45 (48%), Positives = 34/45 (75%) Query: 53 LVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 LVL +VE+ L+ M+ GNQ++AA ++G++R TLR +LKK+GM Sbjct: 416 LVLDDVERKLIAEAMERASGNQSKAARLLGVSRDTLRYRLKKHGM 460 >UniRef50_A7HH93 Transcriptional regulator, Fis family n=4 Tax=Anaeromyxobacter RepID=A7HH93_ANADF Length = 129 Score = 68.7 bits (167), Expect = 5e-11, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 47/74 (63%) Query: 25 KPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGIN 84 +PL + ++Q ++ +F +L G + LY+ V+ EVE+PL+ + G + AA +GI+ Sbjct: 54 RPLDEELQQRVEAFFERLRGHSADGLYDAVMREVERPLIAGALARANGVRAAAAATLGID 113 Query: 85 RGTLRKKLKKYGMN 98 RGTL ++++ G++ Sbjct: 114 RGTLVRRMRALGLD 127 >UniRef50_A7MUF9 Putative uncharacterized protein n=4 Tax=Vibrionales RepID=A7MUF9_VIBHB Length = 143 Score = 68.7 bits (167), Expect = 6e-11, Method: Composition-based stats. Identities = 31/83 (37%), Positives = 50/83 (60%), Gaps = 6/83 (7%) Query: 12 TVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTR 71 ++T+ +QD+V Q VKQ L+ DL +L L EV+ ++++++ +TR Sbjct: 63 NMTTLITQDEVVQ-----CVKQELELTGIADKKHAAPDLSQL-LPEVKCTIVEVLLLHTR 116 Query: 72 GNQTRAALMMGINRGTLRKKLKK 94 GNQ +AA M+G+NR TLRK K+ Sbjct: 117 GNQAQAARMLGMNRATLRKIYKQ 139 >UniRef50_A6CEU3 Acetoacetate metabolism regulatory protein atoC n=2 Tax=Planctomycetaceae RepID=A6CEU3_9PLAN Length = 346 Score = 68.3 bits (166), Expect = 7e-11, Method: Composition-based stats. Identities = 24/84 (28%), Positives = 46/84 (54%), Gaps = 5/84 (5%) Query: 15 TVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQ 74 ++ S+ Q + RD V L+ G+ D++ +++ VE+ ++ V++ +G Q Sbjct: 264 SLPSKAQDPETMCRDLVNMELQRV-----GESSTDVHTQIVSLVEKEVILQVLRSCQGVQ 318 Query: 75 TRAALMMGINRGTLRKKLKKYGMN 98 T+ A +GINR TL KK+ +Y + Sbjct: 319 TKTATRLGINRNTLHKKISEYELE 342 >UniRef50_C4XRA9 Transcriptional regulatory protein ZraR n=9 Tax=Proteobacteria RepID=C4XRA9_DESMR Length = 462 Score = 67.6 bits (164), Expect = 1e-10, Method: Composition-based stats. Identities = 22/51 (43%), Positives = 34/51 (66%) Query: 46 DVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYG 96 D+ L + L +VE+ ++ ++ T GN++ AA ++GI R TL KKLKKYG Sbjct: 410 DMAGLAGMALDDVEREVILATLRDTGGNKSEAARVLGITRATLHKKLKKYG 460 >UniRef50_B5JI58 Sigma-54 interaction domain family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JI58_9BACT Length = 473 Score = 67.2 bits (163), Expect = 1e-10, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 43/86 (50%) Query: 13 VSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRG 72 V + ++++Q +S+ Q + + D Y+ ++ V++ L+ + + G Sbjct: 385 VEQLLRNEEISQPKNSESLSQIVSKFLDTSEKDQKGDAYDSIIEAVDKELISQALARSEG 444 Query: 73 NQTRAALMMGINRGTLRKKLKKYGMN 98 N +A+ +G++R TLRKK+ K + Sbjct: 445 NLAQASRWLGLSRLTLRKKISKLELT 470 >UniRef50_Q7USH9 Nitrogen assimilation regulatory protein n=1 Tax=Rhodopirellula baltica RepID=Q7USH9_RHOBA Length = 514 Score = 66.0 bits (160), Expect = 3e-10, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 45/87 (51%), Gaps = 1/87 (1%) Query: 12 TVSTVNSQDQVTQKPLR-DSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYT 70 T ++ + T + L ++ L +L + ++Y + +E+ ++ V+Q T Sbjct: 418 TRNSGAKSESGTNEKLESEAPGSQLPQLVQRLLKEKSTNVYGEAMEYMERFVILQVLQST 477 Query: 71 RGNQTRAALMMGINRGTLRKKLKKYGM 97 GNQ++AA ++GI RG LR ++ Y + Sbjct: 478 DGNQSQAAEILGITRGKLRDRINSYNI 504 >UniRef50_C1SGC3 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SGC3_9BACT Length = 464 Score = 66.0 bits (160), Expect = 4e-10, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 34/54 (62%) Query: 45 QDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 + N+ Y+ + VE P++ VM T N++ +A ++GINR T RKK++++G Sbjct: 408 SEGNNAYDEFMKIVEYPIIKAVMDKTGNNKSVSAKILGINRNTFRKKVREHGFE 461 >UniRef50_Q1ITP4 Two component, sigma54 specific, transcriptional regulator, Fis family n=8 Tax=Bacteria RepID=Q1ITP4_ACIBL Length = 485 Score = 65.3 bits (158), Expect = 6e-10, Method: Composition-based stats. Identities = 21/43 (48%), Positives = 30/43 (69%) Query: 55 LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 L EVE+ ++M M+ GNQT AA ++ I+R LR KLKK+G+ Sbjct: 430 LEEVERAFVEMAMKEANGNQTHAARLLDISRDALRYKLKKFGL 472 >UniRef50_UPI00016C50F5 nitrogen regulation protein NR(I) n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C50F5 Length = 475 Score = 64.9 bits (157), Expect = 7e-10, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 46/89 (51%), Gaps = 4/89 (4%) Query: 8 SDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVM 67 + T + S + + + V++ ++ QL G++ DL+ ++ +E +LD + Sbjct: 381 PEPSTAAGPVSLTERLRSLATEWVREQVQ----QLEGEEPADLHLKLIEAIEPAVLDETL 436 Query: 68 QYTRGNQTRAALMMGINRGTLRKKLKKYG 96 + GN+ AA +G+ R T+RK ++KY Sbjct: 437 RQVDGNRLVAARWLGLARATVRKLIRKYH 465 >UniRef50_C3WJS3 Nitrogen assimilation regulatory protein n=9 Tax=Fusobacterium RepID=C3WJS3_9FUSO Length = 464 Score = 64.5 bits (156), Expect = 9e-10, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 52/96 (54%), Gaps = 5/96 (5%) Query: 4 QRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDV-NDLYELVLAEVEQPL 62 + + +V+ + S++++ + + +K + +QL ++ +D Y +++++E+ L Sbjct: 373 EDLPPNVIGEKAITSKEEIRALSIENLIKNEI----SQLKSKNKKSDYYFEIISKIEKEL 428 Query: 63 LDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 + +++ T G + A ++GI R TLR K+ Y + Sbjct: 429 IKQILEITNGKKVETAEILGITRNTLRTKMNYYDLE 464 >UniRef50_A6C862 Nitrogen regulation protein NR(I) n=2 Tax=Planctomycetaceae RepID=A6C862_9PLAN Length = 470 Score = 64.5 bits (156), Expect = 1e-09, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 6/72 (8%) Query: 27 LRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRG 86 L+ + L + + ++YE +LA +E P++++ ++ G AA +G++R Sbjct: 403 LKQWAEAQLT------DPEQAANVYEQLLALIEPPVMEVALEKFHGQCAPAARCLGLHRT 456 Query: 87 TLRKKLKKYGMN 98 TL KKLK+YG+ Sbjct: 457 TLSKKLKQYGIE 468 >UniRef50_C6HWP3 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HWP3_9BACT Length = 375 Score = 64.1 bits (155), Expect = 1e-09, Method: Composition-based stats. Identities = 16/44 (36%), Positives = 33/44 (75%) Query: 55 LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 + ++E+ L+ ++ GN+++AA ++GINR TL +KLK++G++ Sbjct: 332 MGDIERTLVQKALERAGGNRSKAAELLGINRTTLIEKLKRFGIS 375 >UniRef50_D0CFR6 Predicted protein n=1 Tax=Acinetobacter baumannii ATCC 19606 RepID=D0CFR6_ACIBA Length = 77 Score = 64.1 bits (155), Expect = 1e-09, Method: Composition-based stats. Identities = 23/54 (42%), Positives = 38/54 (70%) Query: 44 GQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 + + + V+A +E+PLL + TRGNQT+AA ++G+NRGTLR++LK + + Sbjct: 17 ESNTTNAHAEVMALLEKPLLAETLIKTRGNQTKAAELLGLNRGTLRQRLKAHNI 70 >UniRef50_B9JZ35 Transcriptional regulator n=2 Tax=Alphaproteobacteria RepID=B9JZ35_AGRVS Length = 318 Score = 63.7 bits (154), Expect = 2e-09, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 38/60 (63%), Gaps = 5/60 (8%) Query: 39 FAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 + G++ +DL+ E E+ L V+ T+GN ++AA ++GI+R TL +K+K++ ++ Sbjct: 264 LKEKRGEEGDDLH-----EAERAALRRVLSRTKGNVSQAAQLLGISRATLHRKMKRFNIH 318 >UniRef50_C1ZLR0 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZLR0_PLALI Length = 555 Score = 63.3 bits (153), Expect = 2e-09, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 11/92 (11%) Query: 17 NSQDQVTQKPLRDSVKQALKNYFAQLNGQ-----------DVNDLYELVLAEVEQPLLDM 65 ++ + Q PL +V+Q K + Q + L+ LA+ E L Sbjct: 460 TAETKGEQDPLTVAVRQWAKTRLQEAKLQANLAIEAAPQLEDAGLHARFLAQAEAELFQT 519 Query: 66 VMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 ++ R N + AA ++GI+R TL++KL+++G+ Sbjct: 520 ILHQCRQNMSEAARLLGIHRTTLKRKLEEFGL 551 >UniRef50_P0AFB9 Nitrogen regulation protein NR(I) n=502 Tax=Bacteria RepID=NTRC_ECO57 Length = 469 Score = 62.9 bits (152), Expect = 3e-09, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 8/85 (9%) Query: 14 STVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGN 73 ST Q L +AL++ G +L E+E+ LL +++T+G+ Sbjct: 393 STSQMQPDSWATLLAQWADRALRS------GHQ--NLLSEAQPELERTLLTTALRHTQGH 444 Query: 74 QTRAALMMGINRGTLRKKLKKYGMN 98 + AA ++G R TL +KLK+ GM Sbjct: 445 KQEAARLLGWGRNTLTRKLKELGME 469 >UniRef50_P28787 Nitrogen regulation protein NR(I) n=29 Tax=Gammaproteobacteria RepID=NTRC_PROVU Length = 473 Score = 62.6 bits (151), Expect = 4e-09, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 36/71 (50%) Query: 28 RDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGT 87 Q L + + G+ ++ L + E+ LL + YT+G++ AA ++G R T Sbjct: 401 SQHWSQHLSLWADEALGEGKENILNDALPQFERTLLLSALAYTQGHKQDAARLLGWGRNT 460 Query: 88 LRKKLKKYGMN 98 L +KLK+ G+ Sbjct: 461 LTRKLKELGIE 471 >UniRef50_A5D511 Transcriptional regulator n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D511_PELTS Length = 478 Score = 61.8 bits (149), Expect = 6e-09, Method: Composition-based stats. Identities = 21/44 (47%), Positives = 31/44 (70%) Query: 54 VLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 V+ E+ LL+ V++ T GN+ +AA M+GI+R TL KL+KY M Sbjct: 430 VINSKEKELLEEVLRNTGGNKRKAAEMLGIHRTTLYYKLRKYNM 473 >UniRef50_C1ZBV1 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=2 Tax=Planctomyces RepID=C1ZBV1_PLALI Length = 569 Score = 61.0 bits (147), Expect = 1e-08, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 34/52 (65%) Query: 47 VNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 +LY L +E+ LL V+Q ++ NQ++AA ++GI RG +R ++ +G+N Sbjct: 507 STNLYAEALEMMEKYLLTRVLQASQANQSKAAEILGITRGKVRDRIAAFGIN 558 >UniRef50_D0LIH3 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LIH3_HALO1 Length = 466 Score = 60.6 bits (146), Expect = 1e-08, Method: Composition-based stats. Identities = 22/56 (39%), Positives = 36/56 (64%), Gaps = 2/56 (3%) Query: 43 NGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 G +DL L L E+E+ + V++ G +T+A+ ++GINR TL KKL++YG+ Sbjct: 413 RGDSADDL--LSLDELERLHILRVLEACGGQKTKASAVLGINRTTLWKKLRQYGLE 466 >UniRef50_A8V246 Two component, sigma54 specific, transcriptional regulator, Fis family protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8V246_9AQUI Length = 454 Score = 60.6 bits (146), Expect = 1e-08, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 46/87 (52%), Gaps = 16/87 (18%) Query: 28 RDSVKQALKNYFAQLNGQDVNDLYELVL----------------AEVEQPLLDMVMQYTR 71 RDS+ F + +++ DLY+ + ++E+ L++ V++ + Sbjct: 366 RDSILSITDLEFLEEGKEEIPDLYDKLKDIIEQLINHENAKQTKEKIEKILIENVLKKSN 425 Query: 72 GNQTRAALMMGINRGTLRKKLKKYGMN 98 N +++A ++GINR TLRKKL+K +N Sbjct: 426 FNLSKSAQILGINRATLRKKLEKLNIN 452 >UniRef50_Q1K1J7 Response regulator receiver protein n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K1J7_DESAC Length = 98 Score = 60.3 bits (145), Expect = 2e-08, Method: Composition-based stats. Identities = 19/44 (43%), Positives = 31/44 (70%) Query: 55 LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 L EVE+ L+ + GNQT+AA +G++R T+R ++KK+G+N Sbjct: 55 LDEVEKMLIQQALLRYDGNQTKAANCLGMSRDTIRYRMKKFGLN 98 >UniRef50_A3EPR9 Putative two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Leptospirillum RepID=A3EPR9_9BACT Length = 489 Score = 60.3 bits (145), Expect = 2e-08, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%) Query: 43 NGQDVNDLY-ELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 +G N + + EVE+ L+ + ++ N+T+AA M+GI+ TLR KL +YGM Sbjct: 407 DGFSPNGVRPGQSVWEVERELIRVTLEACGQNRTQAAKMLGISVRTLRNKLNEYGM 462 >UniRef50_B5EFV3 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Geobacter RepID=B5EFV3_GEOBB Length = 482 Score = 60.3 bits (145), Expect = 2e-08, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 38/63 (60%) Query: 35 LKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKK 94 L+ F + ++ +YE V +E+ L+ M M+ + NQ AA ++GI+R TLR +L++ Sbjct: 416 LEPVFDGICQKNKGAIYESVNMGLEKALIHMAMEKSNNNQVFAAKLLGISRNTLRDRLER 475 Query: 95 YGM 97 Y + Sbjct: 476 YRI 478 >UniRef50_C6BW44 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Desulfovibrionales RepID=C6BW44_DESAD Length = 444 Score = 60.3 bits (145), Expect = 2e-08, Method: Composition-based stats. Identities = 23/43 (53%), Positives = 31/43 (72%) Query: 52 ELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKK 94 + LAEVEQ + V+ T N+TRAA ++GINR TLR+KLK+ Sbjct: 397 DRSLAEVEQEHIKNVLIMTDNNKTRAAEILGINRKTLREKLKR 439 >UniRef50_A9CI57 Transcriptional regulator n=6 Tax=Rhizobiaceae RepID=A9CI57_AGRT5 Length = 319 Score = 60.3 bits (145), Expect = 2e-08, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 55 LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 LAE E+ L V+ T GN T+AA ++GI+R TL +K+KK+ ++ Sbjct: 276 LAEAERSALRRVLSRTNGNVTQAASLLGISRATLHRKMKKFDVH 319 >UniRef50_Q02BY0 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q02BY0_SOLUE Length = 447 Score = 59.5 bits (143), Expect = 3e-08, Method: Composition-based stats. Identities = 20/45 (44%), Positives = 30/45 (66%) Query: 53 LVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 L L + E+ LL ++ T GNQT+AA ++ I R TLR K+KK+ + Sbjct: 402 LSLEDNERSLLVRALEKTEGNQTQAARLLRITRDTLRYKMKKFNL 446 >UniRef50_A6QAS7 Transcriptional regulator, Fis family n=1 Tax=Sulfurovum sp. NBC37-1 RepID=A6QAS7_SULNB Length = 244 Score = 59.5 bits (143), Expect = 3e-08, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 44/71 (61%), Gaps = 3/71 (4%) Query: 28 RDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGT 87 + S+K A+ Y+ L + N+ Y+ L E+PL++ ++ G+Q + + ++GINR T Sbjct: 177 KQSIKDAV--YYYMLEQMEGNNTYKEYLELYEKPLIEAGLKKY-GSQLQLSQVLGINRNT 233 Query: 88 LRKKLKKYGMN 98 LRKK+ ++ ++ Sbjct: 234 LRKKIHEHDID 244 >UniRef50_A5WGF4 Nitrogen metabolism transcriptional regulator, NtrC, Fis Family n=3 Tax=Psychrobacter RepID=A5WGF4_PSYWF Length = 602 Score = 59.5 bits (143), Expect = 3e-08, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 41/89 (46%), Gaps = 8/89 (8%) Query: 10 VLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQY 69 +T + + Q L++ AL+ Q ++ + E+ L+ + ++Y Sbjct: 519 TITPPALVNSAHSWQDQLQNWAHTALQ--------QGQTEILQQATPTFEKILIRVALEY 570 Query: 70 TRGNQTRAALMMGINRGTLRKKLKKYGMN 98 ++G + AA ++G R TL +K+K G+ Sbjct: 571 SKGRKGEAADLLGWGRNTLTRKIKLLGLE 599 >UniRef50_Q2LXW1 Sigma-54 dependent transcription regulator n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LXW1_SYNAS Length = 450 Score = 59.1 bits (142), Expect = 4e-08, Method: Composition-based stats. Identities = 19/46 (41%), Positives = 32/46 (69%) Query: 52 ELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 L L EVE+ + ++ YT GN T +A ++GI+R TLR+K+++Y + Sbjct: 401 ALSLREVEREHILKILHYTNGNITSSAQILGISRPTLRQKIRQYKI 446 >UniRef50_D0LYF6 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LYF6_HALO1 Length = 462 Score = 59.1 bits (142), Expect = 4e-08, Method: Composition-based stats. Identities = 16/42 (38%), Positives = 30/42 (71%) Query: 54 VLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKY 95 + +VE+ L++ + T GN+T AA ++G+NR TL +K++K+ Sbjct: 416 AIEDVERRLIEEALDRTGGNRTEAAALLGVNRTTLVEKIRKH 457 >UniRef50_A5GBB3 Two component, sigma-54 specific, transcriptional regulator, Fis family n=6 Tax=Desulfuromonadales RepID=A5GBB3_GEOUR Length = 500 Score = 59.1 bits (142), Expect = 4e-08, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 2/93 (2%) Query: 6 VNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDM 65 + L + K L + ++ FA+ + + L E+E+ L+ M Sbjct: 381 LTPVFLNAEIKQQYETAQNKSLHVDSHASAQHSFARGHITIPTG--GISLEELERQLIRM 438 Query: 66 VMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 ++ + GNQT+AA + ++R TLR ++KK+GM+ Sbjct: 439 GLEISGGNQTKAAKYLKMSRDTLRYRMKKFGMS 471 >UniRef50_B4CX09 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Verrucomicrobia RepID=B4CX09_9BACT Length = 253 Score = 59.1 bits (142), Expect = 5e-08, Method: Composition-based stats. Identities = 18/46 (39%), Positives = 31/46 (67%) Query: 53 LVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 +L +E+ M+ T+GNQ RAA ++GI R TLRK+++++G+ Sbjct: 202 QLLPWLEREFTLYAMKATKGNQVRAAKLLGITRATLRKRIERFGIT 247 >UniRef50_B9M1N5 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Geobacter RepID=B9M1N5_GEOSF Length = 483 Score = 58.7 bits (141), Expect = 5e-08, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 37/62 (59%) Query: 35 LKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKK 94 L+ F + ++ +YE V +E+ L+ M M+ + NQ AA ++GI+R TLR +L++ Sbjct: 417 LEPVFDGICLKNKGTIYESVNMGLEKALIHMAMEKSNNNQVFAAKLLGISRNTLRDRLER 476 Query: 95 YG 96 Y Sbjct: 477 YK 478 >UniRef50_A4IPF8 Transcriptional regulator n=6 Tax=Bacillales RepID=A4IPF8_GEOTN Length = 571 Score = 58.7 bits (141), Expect = 5e-08, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 9/74 (12%) Query: 32 KQALKNYFAQLN---------GQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMG 82 ++ L Y + ++ G ++ D ++ ++ + E+ + + GN+ AA +G Sbjct: 497 REHLPAYLSTIHPSVTPMPDGGANIADQWKEIVYQSERERIAAALVAANGNKAEAARRLG 556 Query: 83 INRGTLRKKLKKYG 96 I+R TL +KLKKYG Sbjct: 557 IHRSTLYEKLKKYG 570 >UniRef50_A7GG75 Sensory box sigma-54 dependent transcriptional regulator n=10 Tax=Clostridium RepID=A7GG75_CLOBL Length = 584 Score = 58.7 bits (141), Expect = 5e-08, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 44/85 (51%), Gaps = 3/85 (3%) Query: 13 VSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRG 72 + +++ +VT + + + Q ++ + DL V+ E+ ++ VM+ T+G Sbjct: 502 MVVLSTNGEVTISSVPNHIVQDVEE--IEGESHHRYDL-NEVVKNTEKKIIKEVMEITKG 558 Query: 73 NQTRAALMMGINRGTLRKKLKKYGM 97 N+ +AA ++ I R TL KL +Y + Sbjct: 559 NKKKAAEILNIKRSTLYYKLNQYDL 583 >UniRef50_Q1D5E1 Sigma-54 dependent transcriptional regulator, Fis family n=4 Tax=Myxococcales RepID=Q1D5E1_MYXXD Length = 529 Score = 58.7 bits (141), Expect = 5e-08, Method: Composition-based stats. Identities = 20/43 (46%), Positives = 30/43 (69%) Query: 55 LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 LAEVE+ + V+ +GN+T AA ++ I R TL +KLK+YG+ Sbjct: 483 LAEVERRHILRVLDAVKGNRTAAARVLAIGRNTLARKLKEYGL 525 >UniRef50_B5YL21 Acetoacetate metabolism regulatory protein AtoC n=3 Tax=Bacteria RepID=B5YL21_THEYD Length = 446 Score = 58.7 bits (141), Expect = 5e-08, Method: Composition-based stats. Identities = 19/42 (45%), Positives = 28/42 (66%) Query: 55 LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYG 96 L EVE+ L+ + T NQT+AA ++GI+R LR K+K +G Sbjct: 397 LLEVEKALILKALNSTGWNQTKAAEILGISRKQLRTKMKHHG 438 >UniRef50_C6IXE0 Transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IXE0_9BACL Length = 612 Score = 58.7 bits (141), Expect = 6e-08, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 30/48 (62%) Query: 50 LYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 L + E E L+ ++ T GN++ AA ++GI+RGTL KK++ Y + Sbjct: 564 LRPRITPEEEMELMKEALERTAGNKSNAAKLLGISRGTLYKKIRDYNL 611 >UniRef50_B4SRV8 Nitrogen metabolism transcriptional regulator, NtrC, Fis Family n=20 Tax=Gammaproteobacteria RepID=B4SRV8_STRM5 Length = 482 Score = 58.3 bits (140), Expect = 7e-08, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 8/79 (10%) Query: 14 STVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGN 73 ST ++ + L + ++ L + V L+ V V+ LL+ +Q T G Sbjct: 403 STTSADPGQWEALLAEWARRQL--------AEGVEGLHAQVRERVDHALLEAALQITHGR 454 Query: 74 QTRAALMMGINRGTLRKKL 92 + AA +G+ R TL +KL Sbjct: 455 RAEAAARLGLGRNTLTRKL 473 >UniRef50_C8R333 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R333_9DELT Length = 464 Score = 58.3 bits (140), Expect = 8e-08, Method: Composition-based stats. Identities = 18/43 (41%), Positives = 30/43 (69%) Query: 55 LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 L EVE+ L+ ++ T NQT+AA ++ ++ TLR ++KKYG+ Sbjct: 421 LEEVEKTLIRQALERTNNNQTQAARLLQVSYDTLRYQVKKYGL 463 >UniRef50_C8WT15 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WT15_ALIAD Length = 444 Score = 57.9 bits (139), Expect = 9e-08, Method: Composition-based stats. Identities = 16/43 (37%), Positives = 30/43 (69%) Query: 56 AEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 E+E+ + ++ + GN++RAA ++GI+R L KLK++GM+ Sbjct: 390 KELERARIREALEESGGNKSRAAQLLGISRAALYYKLKQHGMD 432 >UniRef50_A4J599 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J599_DESRM Length = 575 Score = 57.9 bits (139), Expect = 1e-07, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 1/71 (1%) Query: 27 LRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRG 86 L ++ ++LK Q L V + E+ L+ ++ GN++ AA M+GI R Sbjct: 505 LESAIPESLKLSSRQDQATATIGL-ASVTEQTERELIIRTLKQVNGNRSEAARMLGIPRS 563 Query: 87 TLRKKLKKYGM 97 TL K+ + G+ Sbjct: 564 TLYYKMHQLGI 574 >UniRef50_C1SGB7 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SGB7_9BACT Length = 473 Score = 57.6 bits (138), Expect = 1e-07, Method: Composition-based stats. Identities = 19/42 (45%), Positives = 29/42 (69%) Query: 55 LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYG 96 +AE+E+ L+ ++ T GN+T+AA M+GI TLR KL +Y Sbjct: 421 IAEMERELIIKTLKETGGNRTKAADMLGITVRTLRNKLNEYK 462 >UniRef50_A9FB29 Sigma-54 dependent DNA-binding response regulator n=15 Tax=Bacteria RepID=A9FB29_SORC5 Length = 461 Score = 57.6 bits (138), Expect = 1e-07, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 42/70 (60%), Gaps = 1/70 (1%) Query: 29 DSVKQALKNYFAQLNGQDVNDLYELV-LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGT 87 D + + ++ Y +D ELV + EVE+ + V++ GN+++AA ++G +R T Sbjct: 382 DDLPEKIRTYRRSHVLVSSDDPTELVPMEEVERRYILRVLEVVGGNKSQAAQILGFDRAT 441 Query: 88 LRKKLKKYGM 97 L +KL++YGM Sbjct: 442 LYRKLERYGM 451 >UniRef50_Q0A929 Sigma54 specific transcriptional regulator, Fis family n=9 Tax=Proteobacteria RepID=Q0A929_ALHEH Length = 327 Score = 57.6 bits (138), Expect = 1e-07, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 29/44 (65%) Query: 55 LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 + E+E L+ ++ T GN+++AA ++G+ R TL ++KKY + Sbjct: 271 MDELEADLIRQALERTGGNRSQAARLLGLTRDTLLYRMKKYDLT 314 >UniRef50_B5YI45 Transcriptional activator n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YI45_THEYD Length = 424 Score = 57.2 bits (137), Expect = 1e-07, Method: Composition-based stats. Identities = 17/43 (39%), Positives = 30/43 (69%) Query: 55 LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 L + E+ L+ ++ T GN+T+AA ++GI+ TLR K+ +YG+ Sbjct: 379 LKDAERELIVDALKKTEGNRTKAAKILGISVRTLRNKINEYGL 421 >UniRef50_A5L901 Putative uncharacterized protein n=1 Tax=Vibrionales bacterium SWAT-3 RepID=A5L901_9GAMM Length = 94 Score = 57.2 bits (137), Expect = 2e-07, Method: Composition-based stats. Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 1/62 (1%) Query: 29 DSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTL 88 VKQ LK DL +L L E++ +++ ++ +TRGNQ AA M+GINRG L Sbjct: 12 QCVKQELKLAGIIDKKHAAPDLSQL-LPELKFVIVEALLLHTRGNQALAARMLGINRGIL 70 Query: 89 RK 90 RK Sbjct: 71 RK 72 >UniRef50_Q8ABU5 RteB, two-component system response regulator n=6 Tax=Bacteroides RepID=Q8ABU5_BACTN Length = 432 Score = 57.2 bits (137), Expect = 2e-07, Method: Composition-based stats. Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 8/95 (8%) Query: 2 FEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQP 61 + N+ V +++ L SV++A +G D ++ L A+ E+ Sbjct: 344 MREMKNTVRGAVLLTPDGERIAAGSLAFSVREA--------DGADASETLALNDAQKEKE 395 Query: 62 LLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYG 96 + ++ T GN+ AA ++GI+R TL +KL+KYG Sbjct: 396 CIMRALEETGGNRKEAARLLGISRSTLYEKLRKYG 430 >UniRef50_B6BW54 Nitrogen regulation protein n=2 Tax=Betaproteobacteria RepID=B6BW54_9PROT Length = 465 Score = 57.2 bits (137), Expect = 2e-07, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 32/53 (60%) Query: 46 DVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 + ++Y+ + ++E L+ +++ G + +AA ++GI R T+ +K+K ++ Sbjct: 410 NETNIYDTYIEKLESILIKSALKHCSGKRIKAAHILGIGRNTITRKIKDINIS 462 >UniRef50_UPI0001698811 sigma-54-dependent transcriptional regulator n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001698811 Length = 226 Score = 56.8 bits (136), Expect = 2e-07, Method: Composition-based stats. Identities = 18/45 (40%), Positives = 31/45 (68%) Query: 53 LVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 LVL E+E L+ + T GN+++AA ++G++R TL ++KKY + Sbjct: 168 LVLDELEANLIQQALGRTSGNRSKAARLLGLSRDTLLYRMKKYAI 212 >UniRef50_Q1Q0T6 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q0T6_9BACT Length = 472 Score = 56.8 bits (136), Expect = 2e-07, Method: Composition-based stats. Identities = 17/46 (36%), Positives = 33/46 (71%) Query: 53 LVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 L L ++E+ L+ ++ ++ N T+AA ++G+ RGT R +L+KYG++ Sbjct: 426 LSLDDLEKQLVAKALERSKNNITKAAKLLGLTRGTFRYRLQKYGIS 471 >UniRef50_Q1PXP1 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PXP1_9BACT Length = 455 Score = 56.8 bits (136), Expect = 2e-07, Method: Composition-based stats. Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Query: 41 QLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYG 96 L+ L++ VL EVE+ L++ Q T GNQ + A ++GI R TLR KL + Sbjct: 401 DLSNTQTIQLHD-VLTEVEKRLIEWAHQKTNGNQVKMAEILGIPRTTLRNKLVRLK 455 >UniRef50_Q1IVS2 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IVS2_ACIBL Length = 319 Score = 56.8 bits (136), Expect = 2e-07, Method: Composition-based stats. Identities = 18/46 (39%), Positives = 33/46 (71%) Query: 53 LVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 + L E+E+ + V+ TRG +++AA ++GI+R TL +K K+YG++ Sbjct: 274 MTLEELERSYIAEVLDATRGKKSKAAEILGISRKTLLEKRKRYGLD 319 >UniRef50_Q1D5T0 Sigma-54 dependent DNA-binding reponse regulator n=9 Tax=Cystobacterineae RepID=Q1D5T0_MYXXD Length = 477 Score = 56.8 bits (136), Expect = 2e-07, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%) Query: 43 NGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 +G L E V E+ L+ ++ GN++ AA +GI R TL KL+KYG++ Sbjct: 416 DGAPGAGLKERV-EAYERGLVLDALRIAGGNRSEAARRLGIGRATLHDKLRKYGLD 470 >UniRef50_Q01VW0 Transcriptional regulator, Fis family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01VW0_SOLUE Length = 91 Score = 56.4 bits (135), Expect = 3e-07, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 40/66 (60%), Gaps = 2/66 (3%) Query: 35 LKNYFAQLNGQDVND--LYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKL 92 +K+ F L ++ + + +E+ ++ V++ ++GNQ AA +GI+R TL++K+ Sbjct: 1 MKDRFDALVEHLLDGGLFLQQAIEVLEKSMIQSVLERSKGNQCAAAKQLGIHRNTLQRKM 60 Query: 93 KKYGMN 98 +YG+N Sbjct: 61 VEYGLN 66 >UniRef50_A1TKJ1 Sigma54 specific transcriptional regulator, Fis family n=32 Tax=Bacteria RepID=A1TKJ1_ACIAC Length = 373 Score = 56.4 bits (135), Expect = 3e-07, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 4/78 (5%) Query: 19 QDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAA 78 + + P + QAL+ + L Q + LYE +E+ ++ ++ NQ +AA Sbjct: 294 RRSGSDAPADATPLQALETALSGLFQQQGDQLYER----IEETVVRAAFEFCHRNQVQAA 349 Query: 79 LMMGINRGTLRKKLKKYG 96 ++GI+R LR +L ++G Sbjct: 350 RLLGISRNVLRARLIRHG 367 >UniRef50_Q46PB6 Helix-turn-helix, Fis-type n=7 Tax=Burkholderiaceae RepID=Q46PB6_RALEJ Length = 592 Score = 56.4 bits (135), Expect = 3e-07, Method: Composition-based stats. Identities = 19/44 (43%), Positives = 28/44 (63%) Query: 55 LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 LAE E +L + GN +RAA ++GI+R TL +L+KYG+ Sbjct: 545 LAETEVAMLRAAVAEANGNLSRAARVLGISRPTLAYRLQKYGIT 588 >UniRef50_Q1INE5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Acidobacteria RepID=Q1INE5_ACIBL Length = 459 Score = 56.4 bits (135), Expect = 3e-07, Method: Composition-based stats. Identities = 19/42 (45%), Positives = 28/42 (66%) Query: 55 LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYG 96 L ++E+ + V+ T NQTRAA M+ I+R TL K+K+YG Sbjct: 408 LEDIEKEHILHVLDETNWNQTRAAEMLDIDRVTLHHKIKRYG 449 >UniRef50_C6HWZ9 Probable regulatory protein, Fis family (Fragment) n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HWZ9_9BACT Length = 183 Score = 56.4 bits (135), Expect = 3e-07, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 38/68 (55%), Gaps = 1/68 (1%) Query: 27 LRDSVKQALKNYFAQLNG-QDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINR 85 + + + Y + ++ +D + Y ++ +++ LL ++ +GNQ RA+ ++GI+R Sbjct: 108 IEHLLHAKCRQYLSAVSSLRDTDSAYAFFVSLLDRLLLPGALEVAQGNQHRASKILGISR 167 Query: 86 GTLRKKLK 93 T R K+K Sbjct: 168 TTFRNKMK 175 >UniRef50_Q2IK30 Two component, sigma54 specific, transcriptional regulator, Fis family n=8 Tax=Anaeromyxobacter RepID=Q2IK30_ANADE Length = 466 Score = 56.4 bits (135), Expect = 3e-07, Method: Composition-based stats. Identities = 17/43 (39%), Positives = 29/43 (67%) Query: 55 LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 L E+E+ ++ M RGNQ+ AA +GI+R TL ++L++Y + Sbjct: 408 LDELERAVIARTMVAVRGNQSEAARRLGISRNTLTERLRRYEL 450 >UniRef50_A7HBA5 Two component, sigma54 specific, transcriptional regulator, Fis family n=6 Tax=Bacteria RepID=A7HBA5_ANADF Length = 466 Score = 56.0 bits (134), Expect = 3e-07, Method: Composition-based stats. Identities = 17/43 (39%), Positives = 30/43 (69%) Query: 55 LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 L EVE+ + V+ + GN +++A ++GI+R TL K++KYG+ Sbjct: 405 LEEVEKRHVAAVLAHANGNVSQSARILGIDRVTLYNKMRKYGL 447 >UniRef50_B3QW87 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QW87_CHLT3 Length = 497 Score = 56.0 bits (134), Expect = 3e-07, Method: Composition-based stats. Identities = 17/44 (38%), Positives = 29/44 (65%) Query: 55 LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 L ++E+ L ++ T GNQ +AA ++GI R LR ++KKY ++ Sbjct: 444 LEQIERQYLLDALEKTGGNQLQAAKLLGIERHVLRYQMKKYEID 487 >UniRef50_C8QYP0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QYP0_9DELT Length = 506 Score = 56.0 bits (134), Expect = 4e-07, Method: Composition-based stats. Identities = 19/46 (41%), Positives = 28/46 (60%) Query: 50 LYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKY 95 L L EVE+ ++ ++ T N+T AA M+GI+ TLR KL +Y Sbjct: 455 LAGRSLREVERQMILQALRQTDDNRTHAAKMLGISVRTLRNKLNEY 500 >UniRef50_A6UCY3 Two component, sigma54 specific, transcriptional regulator, Fis family n=46 Tax=Alphaproteobacteria RepID=A6UCY3_SINMW Length = 549 Score = 56.0 bits (134), Expect = 4e-07, Method: Composition-based stats. Identities = 19/44 (43%), Positives = 30/44 (68%) Query: 55 LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 LAEVE+ L+ +++ RG ++ A +GI R TL +KLK YG++ Sbjct: 497 LAEVEEELIRFALKFYRGQMSQVARKLGIGRSTLYRKLKDYGID 540 >UniRef50_B8DQ72 Two component, sigma54 specific, transcriptional regulator, Fis family n=6 Tax=Desulfovibrio RepID=B8DQ72_DESVM Length = 486 Score = 56.0 bits (134), Expect = 4e-07, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 38/58 (65%) Query: 40 AQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 L+ D +++++ ++ V + ++ + T GN+TRAA ++G++R TL K++KYG+ Sbjct: 422 RTLSESDGDNVFDSLMDHVGRLVVREALHLTGGNRTRAARLLGLSRPTLLAKIEKYGL 479 >UniRef50_C7LP79 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Desulfovibrionales RepID=C7LP79_DESBD Length = 458 Score = 55.6 bits (133), Expect = 4e-07, Method: Composition-based stats. Identities = 19/44 (43%), Positives = 31/44 (70%) Query: 55 LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 L E+E+ + MVM +GN++RAA ++GI R TL +KL++Y + Sbjct: 403 LEELERSHISMVMHAVQGNKSRAAQVLGIGRKTLYRKLEEYRLT 446 >UniRef50_C0QAK8 Putative nitrogen assimilation regulatory protein NtrC n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QAK8_DESAH Length = 455 Score = 55.6 bits (133), Expect = 4e-07, Method: Composition-based stats. Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 2/82 (2%) Query: 17 NSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTR 76 ++ L D V Q + A+ + +D+ L E+E+ ++ + T GN+T Sbjct: 373 DTDRIDVSDLLMDGVPQPADS--AEKDSGFPHDMALSPLREMEEKMIFHTLDKTEGNRTH 430 Query: 77 AALMMGINRGTLRKKLKKYGMN 98 AA ++GI+ TLR KL +Y N Sbjct: 431 AAKILGISVRTLRNKLNEYKKN 452 >UniRef50_D0LSA1 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LSA1_HALO1 Length = 575 Score = 55.6 bits (133), Expect = 5e-07, Method: Composition-based stats. Identities = 18/43 (41%), Positives = 27/43 (62%) Query: 55 LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 LAEVE+ + + GN++ AA +GI TL +KLK+YG+ Sbjct: 522 LAEVERAHILATLAACGGNRSEAARRLGIGAATLFRKLKRYGV 564 >UniRef50_Q39QH6 Sigma54 specific transcriptional regulator with PAS sensor, Fis family n=5 Tax=Geobacter RepID=Q39QH6_GEOMG Length = 609 Score = 55.6 bits (133), Expect = 5e-07, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 39/61 (63%), Gaps = 3/61 (4%) Query: 35 LKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKK 94 L++Y Q G+ ++ ++ + ++E+ +L+ ++ GN+ AA ++GI+R L KKL+K Sbjct: 546 LESYIRQHLGKK--NISDM-MDDLERVILEKALEICNGNKLHAAQLLGISRPGLYKKLQK 602 Query: 95 Y 95 Y Sbjct: 603 Y 603 >UniRef50_Q0APQ3 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Maricaulis maris MCS10 RepID=Q0APQ3_MARMM Length = 421 Score = 55.6 bits (133), Expect = 5e-07, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 27/47 (57%) Query: 52 ELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 + + V++ L + GN++RAA ++G+NR TL ++L + + Sbjct: 371 AVAIDAVDRALFSQALDRCGGNRSRAADLLGLNRNTLARRLAELDPD 417 >UniRef50_D0LUW9 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LUW9_HALO1 Length = 623 Score = 55.6 bits (133), Expect = 5e-07, Method: Composition-based stats. Identities = 17/46 (36%), Positives = 28/46 (60%) Query: 52 ELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 +A VE+ + ++ GNQT AA +G++R +L KL+KYG+ Sbjct: 571 REYIATVERDAIVAALEECGGNQTHAARRLGMSRRSLIYKLEKYGL 616 >UniRef50_A4CMC3 Two component, sigma54 specific, transcriptional regulator, Fis family protein n=7 Tax=Bacteroidetes RepID=A4CMC3_9FLAO Length = 441 Score = 55.6 bits (133), Expect = 5e-07, Method: Composition-based stats. Identities = 19/39 (48%), Positives = 29/39 (74%) Query: 55 LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLK 93 L E+E+ + V+ +T GN+TRAA ++ I+R TLR+KLK Sbjct: 403 LREMERDYVRRVLAHTGGNKTRAAEILQIDRKTLREKLK 441 >UniRef50_D0LQ47 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LQ47_HALO1 Length = 665 Score = 55.6 bits (133), Expect = 5e-07, Method: Composition-based stats. Identities = 18/44 (40%), Positives = 29/44 (65%) Query: 55 LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 L E+E+ + +Q T GN+ +AA ++ I+R TL KKLK Y ++ Sbjct: 621 LRELEREGIIAALQATGGNKVQAAALLQIDRSTLYKKLKDYDIS 664 >UniRef50_C2W7W3 Transcriptional regulator n=4 Tax=Bacillus RepID=C2W7W3_BACCE Length = 617 Score = 55.6 bits (133), Expect = 5e-07, Method: Composition-based stats. Identities = 16/44 (36%), Positives = 31/44 (70%) Query: 54 VLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 V E E+ L++ V++ +GN+++AA ++GI+R TL KL ++ + Sbjct: 574 VRDEEERGLIERVLKEAKGNKSKAAALLGISRATLYNKLSRFKI 617 >UniRef50_B9M8I4 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Geobacter RepID=B9M8I4_GEOSF Length = 455 Score = 55.6 bits (133), Expect = 5e-07, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 35/56 (62%) Query: 43 NGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 +GQ+ L L EVE+ + V+ Y R + RAA ++GI+R TL +++K+YG+ Sbjct: 395 DGQERFPLLLKPLHEVEREHIQNVLCYVRNEKKRAAEILGISRPTLDRRIKEYGLE 450 >UniRef50_P17899 Transcriptional regulatory protein flbD n=24 Tax=Alphaproteobacteria RepID=FLBD_CAUCR Length = 455 Score = 55.6 bits (133), Expect = 5e-07, Method: Composition-based stats. Identities = 20/41 (48%), Positives = 30/41 (73%) Query: 55 LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKY 95 +AEVEQ L+ +++ GN+T AA ++GI+ TLR KLK+Y Sbjct: 397 VAEVEQQLIIDTLEHCLGNRTHAANILGISIRTLRNKLKEY 437 >UniRef50_C6BWX2 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BWX2_DESAD Length = 447 Score = 55.2 bits (132), Expect = 5e-07, Method: Composition-based stats. Identities = 19/44 (43%), Positives = 32/44 (72%) Query: 55 LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 L EVE+ ++ VM T GN+T+AA ++GI+R +L +K+K+ G+ Sbjct: 401 LEEVERDHIEKVMLATNGNKTQAAKILGIDRVSLWRKMKRLGLE 444 >UniRef50_A3ESN7 Putative two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Leptospirillum sp. Group II RepID=A3ESN7_9BACT Length = 458 Score = 55.2 bits (132), Expect = 6e-07, Method: Composition-based stats. Identities = 16/43 (37%), Positives = 29/43 (67%) Query: 55 LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 L E E+ + ++ T GN+ +AA ++GI+R +L KL++YG+ Sbjct: 409 LKENERDQIRKILAETGGNKAQAARILGISRKSLYAKLREYGL 451 >UniRef50_UPI00016C585F ornithine decarboxylase inhibitor-putative sigma54 transciptional regulator n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C585F Length = 643 Score = 55.2 bits (132), Expect = 6e-07, Method: Composition-based stats. Identities = 16/44 (36%), Positives = 30/44 (68%) Query: 55 LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 + EVE+ + +++T N++RAA ++GI R TL +K+ +YG+ Sbjct: 599 IEEVEKRHILETLKHTDWNKSRAATILGIERSTLDRKIDRYGLT 642 >UniRef50_A9G9I4 Nif-specific regulatory protein n=2 Tax=Sorangium cellulosum 'So ce 56' RepID=A9G9I4_SORC5 Length = 501 Score = 55.2 bits (132), Expect = 6e-07, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 28/44 (63%) Query: 54 VLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 + E+ + ++ GNQTRAA ++GI+R TL ++++ YG+ Sbjct: 452 AMEAHERERIVQALEQCMGNQTRAAALLGISRRTLVERIRVYGL 495 >UniRef50_A0QWN8 Putative sigma 54 type regulator n=1 Tax=Mycobacterium smegmatis str. MC2 155 RepID=A0QWN8_MYCS2 Length = 572 Score = 55.2 bits (132), Expect = 6e-07, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 28/45 (62%) Query: 54 VLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 ++ E + +Q GN+++AA ++G++R T+ +K+K Y ++ Sbjct: 527 LMERTEIEAIRRALQEADGNRSKAAELLGVSRATIHRKMKTYHLS 571 >UniRef50_C6NXS5 Nitrogen metabolism transcriptional regulator, NtrC, Fis Family n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NXS5_9GAMM Length = 134 Score = 55.2 bits (132), Expect = 6e-07, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 34/51 (66%) Query: 48 NDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 +++ + + + E+ L+ +++TRG++ RAA +G R T+ +KL++ G++ Sbjct: 77 DEILDELGTQFERCCLETALRFTRGHKQRAAQKLGWGRNTITRKLRELGID 127 >UniRef50_C0GH19 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GH19_9FIRM Length = 739 Score = 55.2 bits (132), Expect = 6e-07, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 46/84 (54%), Gaps = 8/84 (9%) Query: 16 VNSQDQVTQKPLRDSVKQALK--NYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGN 73 + +D + L + Q ++ Y A G ++++ +EVE+ + ++ T+ N Sbjct: 661 LVEEDIINIDHLPAHLWQHIQSSRYLAS--GHSLDNM----TSEVERDAIINALKATKNN 714 Query: 74 QTRAALMMGINRGTLRKKLKKYGM 97 +++AA ++G++R T +KLK+Y + Sbjct: 715 RSKAAKLLGLHRSTFYEKLKRYDL 738 >UniRef50_A6GDL8 Sigma-54 dependent transcriptional regulator, Fis family protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GDL8_9DELT Length = 590 Score = 55.2 bits (132), Expect = 6e-07, Method: Composition-based stats. Identities = 18/40 (45%), Positives = 26/40 (65%) Query: 53 LVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKL 92 L LA +E+ ++ V+Q GNQ+ AA +GI R TL +KL Sbjct: 548 LSLAAIERAHIEAVVQACEGNQSEAARRLGIGRNTLARKL 587 >UniRef50_Q7WZ29 MmoR n=1 Tax=Methylococcus capsulatus RepID=Q7WZ29_METCA Length = 581 Score = 55.2 bits (132), Expect = 6e-07, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 1/60 (1%) Query: 40 AQLNGQDVNDLYE-LVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 + L G++ + L L++VE + + RGN ++AA ++GI R TL KK+ +YG++ Sbjct: 501 SGLEGREAVHFADGLSLSKVESESIAAAICSCRGNMSQAARVLGIARSTLYKKVSRYGLS 560 >UniRef50_Q8RE11 Acetoacetate metabolism regulatory protein atoC n=15 Tax=Fusobacterium RepID=Q8RE11_FUSNN Length = 469 Score = 55.2 bits (132), Expect = 6e-07, Method: Composition-based stats. Identities = 17/44 (38%), Positives = 31/44 (70%) Query: 55 LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 L EVE+ ++ + +Q TR N+ + ++GI R TL +K++KYG++ Sbjct: 424 LEEVERVVIAIALQKTRWNKQETSKILGIGRTTLYEKIRKYGLD 467 >UniRef50_B8FJU0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FJU0_DESAA Length = 443 Score = 55.2 bits (132), Expect = 7e-07, Method: Composition-based stats. Identities = 17/41 (41%), Positives = 27/41 (65%) Query: 55 LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKY 95 L E+E+ ++ + T GN+T AA ++GI+ TLR KL +Y Sbjct: 399 LREMEEQMIYQALDQTEGNRTHAAQILGISVRTLRNKLNEY 439 >UniRef50_Q1PYM7 Similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYM7_9BACT Length = 469 Score = 55.2 bits (132), Expect = 7e-07, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 32/52 (61%) Query: 46 DVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 + L LA +E+ ++ V++ T +T AA ++GINR TL K+K+YG+ Sbjct: 416 SSDGLDARSLAFMEKQHIENVLKETSWRRTEAARVLGINRTTLYNKIKEYGI 467 >UniRef50_Q2LRK0 Bacterial regulatory protein, Fis family n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LRK0_SYNAS Length = 166 Score = 55.2 bits (132), Expect = 7e-07, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 41/74 (55%), Gaps = 2/74 (2%) Query: 27 LRDSVKQALKNYFAQLNGQDV--NDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGIN 84 L +++ L++ L+ D + LY+ ++ V++ L + +Q ++ AA +GIN Sbjct: 89 LERILQKQLEDIATVLHSTDSDRSTLYDDIMTMVDRGLYRIALQRNNNVKSAAAAYLGIN 148 Query: 85 RGTLRKKLKKYGMN 98 R T +KK+ K G++ Sbjct: 149 RNTFQKKMAKLGLD 162 >UniRef50_C8W252 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W252_DESAS Length = 591 Score = 55.2 bits (132), Expect = 7e-07, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 33/59 (55%) Query: 39 FAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 F + +N +L +VE+ + + T GN+ +AA ++GI+R L KK+ +YG+ Sbjct: 531 FGKSKRHSINKSLPSLLEQVEKEAIADALSVTNGNKMQAAKILGISRAWLYKKIAQYGI 589 >UniRef50_Q8EMV1 Transcriptional regulator n=2 Tax=Bacillaceae RepID=Q8EMV1_OCEIH Length = 594 Score = 55.2 bits (132), Expect = 7e-07, Method: Composition-based stats. Identities = 17/40 (42%), Positives = 28/40 (70%) Query: 59 EQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 E L+ + ++ T GN+++AA +GI+R TL +KLKK+ M Sbjct: 554 ESELIRLTLEQTGGNKSKAAQKLGIHRTTLYQKLKKFDME 593 >UniRef50_B8IYK1 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Desulfovibrio RepID=B8IYK1_DESDA Length = 505 Score = 54.9 bits (131), Expect = 7e-07, Method: Composition-based stats. Identities = 17/41 (41%), Positives = 29/41 (70%) Query: 55 LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKY 95 L E+E+ ++ ++ T GN+T+AA ++GI+ TLR KL +Y Sbjct: 457 LHEMERIMILKGLEATSGNRTQAADLLGISVRTLRNKLNEY 497 >UniRef50_B5YJY4 Response regulator HsfA n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YJY4_THEYD Length = 421 Score = 54.9 bits (131), Expect = 7e-07, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 2/65 (3%) Query: 35 LKNYF--AQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKL 92 L Y Q + + + + E+ L+ +Q +RGN ++AA ++GI+R L++KL Sbjct: 355 LPAYLLKTQHSKKTPHGNLREAVDNFEKELIWSALQKSRGNISKAAELLGIHRQQLQRKL 414 Query: 93 KKYGM 97 K++ + Sbjct: 415 KQFKI 419 >UniRef50_B3E4E8 Putative sigma54 specific transcriptional regulator n=1 Tax=Geobacter lovleyi SZ RepID=B3E4E8_GEOLS Length = 408 Score = 54.9 bits (131), Expect = 7e-07, Method: Composition-based stats. Identities = 18/45 (40%), Positives = 32/45 (71%) Query: 54 VLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 +L + E+ L++ ++ +GN+T+AA +G++R LRKKLK+ GM Sbjct: 364 LLKDSEKQLIEQALKEAKGNKTQAAERLGMSREGLRKKLKRLGME 408 >UniRef50_C8WZC4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8WZC4_DESRD Length = 448 Score = 54.9 bits (131), Expect = 8e-07, Method: Composition-based stats. Identities = 17/43 (39%), Positives = 28/43 (65%) Query: 55 LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 L E+E+ L+ ++ T NQ+ AA +GI+R LR K+K +G+ Sbjct: 405 LMEMEKRLIVQTLEKTEQNQSAAARELGISRKQLRTKMKHHGL 447 >UniRef50_B8J7L3 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Anaeromyxobacter RepID=B8J7L3_ANAD2 Length = 484 Score = 54.9 bits (131), Expect = 8e-07, Method: Composition-based stats. Identities = 18/45 (40%), Positives = 31/45 (68%) Query: 53 LVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 L LAEVE+ ++ V+ N++ AA ++GI+R TL K+++YG+ Sbjct: 419 LTLAEVERAHVEKVLAMVGWNRSLAARLLGIDRRTLFTKIQRYGL 463 >UniRef50_D2L1Y0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L1Y0_9DELT Length = 505 Score = 54.9 bits (131), Expect = 8e-07, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 2/58 (3%) Query: 40 AQLNGQDVNDLYELVLAE--VEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKY 95 A+L + D+ +L +E+ ++ + T GN+T+AA ++GI+ TLR KL +Y Sbjct: 440 ARLFDRAPADVSGELLPLDVMERHMIIKSLDRTEGNRTQAAQLLGISVRTLRNKLNEY 497 >UniRef50_Q027R3 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Bacteria RepID=Q027R3_SOLUE Length = 477 Score = 54.5 bits (130), Expect = 9e-07, Method: Composition-based stats. Identities = 18/42 (42%), Positives = 29/42 (69%) Query: 55 LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYG 96 + E E+ L+ +++T N+TRAA ++GI+ TL KLK+YG Sbjct: 426 VEEAEKGLILRTLEHTNNNKTRAADILGISLKTLHNKLKEYG 467 >UniRef50_B0SC18 Transcriptional regulator n=7 Tax=Bacteria RepID=B0SC18_LEPBA Length = 705 Score = 54.5 bits (130), Expect = 9e-07, Method: Composition-based stats. Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 1/58 (1%) Query: 41 QLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 QL+G D + E+V++EVE L+ M+ R +TR A +GINR TL KK+K+ + Sbjct: 648 QLDGLDGRAM-EIVVSEVESRLIQYAMKKFRYTKTRVAKFLGINRNTLDKKIKELNIE 704 >UniRef50_A1VHV7 Sigma54 specific transcriptional regulator, Fis family n=5 Tax=Desulfovibrio vulgaris RepID=A1VHV7_DESVV Length = 614 Score = 54.5 bits (130), Expect = 9e-07, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 28/44 (63%) Query: 55 LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 L +E+ + + + GN++RAA ++GI R LRKKL ++ ++ Sbjct: 565 LHGLERETILAALDHAGGNKSRAAELLGITREGLRKKLLRFAIS 608 >UniRef50_A3PJU4 GAF modulated sigma54 specific transcriptional regulator, Fis family n=4 Tax=Alphaproteobacteria RepID=A3PJU4_RHOS1 Length = 645 Score = 54.5 bits (130), Expect = 1e-06, Method: Composition-based stats. Identities = 18/46 (39%), Positives = 29/46 (63%) Query: 52 ELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 E L EVE+ + RGN TR A ++G++R TL +K+++YG+ Sbjct: 595 EQSLDEVEETAIRQAFAAARGNVTRVAAILGVSRPTLYRKMRQYGI 640 >UniRef50_A5EVU6 Two-component response regulator PilR n=2 Tax=Cardiobacteriaceae RepID=A5EVU6_DICNV Length = 528 Score = 54.5 bits (130), Expect = 1e-06, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 3/90 (3%) Query: 9 DVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQ 68 D T T Q ++ S ++ K + Q++ D E + E+E+ LL ++ Sbjct: 442 DEQTKQTTAPSSQTPPPTIQKSSERVHK---SDEKAQEMPDDLEGFMQEMERKLLIKALK 498 Query: 69 YTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 N+T+AA +GI+ +R KLKK G++ Sbjct: 499 ENGNNKTKAAESLGISFRAMRYKLKKLGID 528 >UniRef50_B8FL05 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FL05_DESAA Length = 453 Score = 54.5 bits (130), Expect = 1e-06, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 5/66 (7%) Query: 37 NYFAQLNGQDVNDLY----ELV-LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKK 91 + Q Q DL ++V L ++E+ + V+ T G +AA ++GINR TL K Sbjct: 388 EHLPQDIRQQPPDLRSFSDKMVSLKDLERDYIRFVLSRTNGGIQKAAGILGINRKTLSMK 447 Query: 92 LKKYGM 97 +KKYG+ Sbjct: 448 MKKYGL 453 >UniRef50_Q2LQP1 Transcrption factor sigma 54 type n=4 Tax=Deltaproteobacteria RepID=Q2LQP1_SYNAS Length = 555 Score = 54.5 bits (130), Expect = 1e-06, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 34/66 (51%) Query: 33 QALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKL 92 L F + ++ E LA E+ ++ +Q + GN+ AA M+GI+R L KK+ Sbjct: 482 HNLPQAFHKERKVTMSGTLEEQLARAERNAIETALQTSNGNRALAARMLGIHRTALYKKM 541 Query: 93 KKYGMN 98 + G++ Sbjct: 542 NRLGVD 547 >UniRef50_D2UDB2 Probable flagellar sigma-54 dependent transcriptional activator fleq protein n=1 Tax=Xanthomonas albilineans RepID=D2UDB2_XANAL Length = 495 Score = 54.5 bits (130), Expect = 1e-06, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 9/71 (12%) Query: 28 RDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGT 87 V L L G +A +E L++ ++ T+G AA ++G+ R T Sbjct: 426 ATQVAATLPESGLDLRGH---------MANIELALINEALERTQGVVAHAAQLLGLRRTT 476 Query: 88 LRKKLKKYGMN 98 L +KL+KYG++ Sbjct: 477 LVEKLRKYGID 487 >UniRef50_B5XUZ1 Sigma-54 dependent transcriptional regulator/ABC transporter, substrate-binding protein, aliphatic sulfonates family n=7 Tax=Enterobacteriaceae RepID=B5XUZ1_KLEP3 Length = 647 Score = 54.5 bits (130), Expect = 1e-06, Method: Composition-based stats. Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 13/96 (13%) Query: 3 EQRVNSDVLTVSTVN-SQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQP 61 E+ ++ L ++T+N + + L D ++ L L G+ L++ V + Sbjct: 244 EEEISPAQLRLATLNDAPAPASDHELDDFIRHQL-----ALPGEP---LWQRVTS----A 291 Query: 62 LLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 L+ M + NQ++AA ++GI+R TLR +L G+ Sbjct: 292 LIRHAMAHCDDNQSQAAALLGISRHTLRTQLANLGL 327 >UniRef50_C0GEJ3 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GEJ3_9FIRM Length = 462 Score = 54.5 bits (130), Expect = 1e-06, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 1/70 (1%) Query: 28 RDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGT 87 + VKQAL ++ + N L + + E+ + ++ GN+ +AA ++GI+R T Sbjct: 394 ENHVKQALSGINSEERKSNTNALEDQI-HLTEKDAIINALESCNGNKAQAAKLLGIHRTT 452 Query: 88 LRKKLKKYGM 97 L +K+KK M Sbjct: 453 LYQKMKKLNM 462 >UniRef50_Q1CWG7 Sigma-54 dependent DNA-binding response regulator n=6 Tax=Bacteria RepID=Q1CWG7_MYXXD Length = 477 Score = 54.5 bits (130), Expect = 1e-06, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 11/82 (13%) Query: 27 LRDSVKQAL-----------KNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQT 75 L +V++A+ + + + L E+ L EVE+ L++ + GN + Sbjct: 392 LEHAVERAMLMASGDEVTQEDLLLKRAGREGMARLEEMTLEEVERYLIERALARHEGNVS 451 Query: 76 RAALMMGINRGTLRKKLKKYGM 97 AA +G++R L ++L+ YG+ Sbjct: 452 EAAKGLGLSRSALYRRLQYYGI 473 >UniRef50_C5EPL2 Sigma54 specific transcriptional regulator n=3 Tax=Clostridiales RepID=C5EPL2_9FIRM Length = 640 Score = 54.1 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 16/39 (41%), Positives = 27/39 (69%) Query: 59 EQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 E L ++ G++TRAA ++G++R TL +K++KYGM Sbjct: 602 EPERLRQALEQCNGSRTRAARLLGMDRSTLWRKMQKYGM 640 >UniRef50_B7R881 Sigma-54 interaction domain family protein n=3 Tax=Firmicutes RepID=B7R881_9THEO Length = 478 Score = 54.1 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 19/44 (43%), Positives = 29/44 (65%) Query: 55 LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 LA+VE L+ ++ T GN +RAA ++GI R TL+ K+K +N Sbjct: 434 LAKVEYELITKTLKKTNGNISRAAEILGIPRQTLQYKIKMLKIN 477 >UniRef50_Q8ES30 Transcriptional regulator n=1 Tax=Oceanobacillus iheyensis RepID=Q8ES30_OCEIH Length = 573 Score = 54.1 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 6/85 (7%) Query: 16 VNSQDQVTQKPLRDSV--KQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGN 73 ++ +T L D + KQ L +Y N + L E E E+ + +++ +GN Sbjct: 493 LSESQHMTLDNLPDDIDDKQRLSSYNFLANKKVAESLSE----EEERDRIKETLEHVKGN 548 Query: 74 QTRAALMMGINRGTLRKKLKKYGMN 98 +T+AA ++GI+R TL KL +Y + Sbjct: 549 KTKAAKLLGISRATLYNKLSRYTLE 573 >UniRef50_Q6MHX6 Transcriptional regulatory protein flbD n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MHX6_BDEBA Length = 280 Score = 54.1 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 30/44 (68%) Query: 53 LVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYG 96 + L+EVE+ L+ ++ T N+TRAA M+GI+ TLR KL +Y Sbjct: 232 MSLSEVEKRLIIQTLELTAQNRTRAAQMLGISIRTLRNKLNEYK 275 >UniRef50_A0LL20 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LL20_SYNFM Length = 441 Score = 54.1 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 19/43 (44%), Positives = 27/43 (62%) Query: 52 ELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKK 94 LAEVE + V+ GN+T AA ++G++R TLR KL+K Sbjct: 398 NRTLAEVEAEHVRRVLDSVGGNKTLAARILGVDRKTLRAKLRK 440 >UniRef50_P26047 Signal-transduction and transcriptional-control protein n=10 Tax=Clostridium RepID=STC_CLOBE Length = 632 Score = 54.1 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 1/48 (2%) Query: 51 YEL-VLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 Y++ L E+E+ + + + GN ++A ++GINR TL K+KKY + Sbjct: 582 YDMCSLEELEKRAISICINQCGGNISKACRILGINRSTLYIKIKKYNI 629 >UniRef50_Q0AVD1 Putative uncharacterized protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AVD1_SYNWW Length = 554 Score = 54.1 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 41/78 (52%), Gaps = 3/78 (3%) Query: 20 DQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAAL 79 + +T + D++ Q +Y + + +L + E+ L++ V++ GN+++AA Sbjct: 478 NTITINDIPDNIIQRKNHYSSTTGSHSS---LDNILGKQEKALIEEVLKNCGGNKSKAAK 534 Query: 80 MMGINRGTLRKKLKKYGM 97 + I+R L +KL KY + Sbjct: 535 TLNIHRSVLYRKLHKYDI 552 >UniRef50_B8DQD3 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Desulfovibrionales RepID=B8DQD3_DESVM Length = 515 Score = 54.1 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 17/45 (37%), Positives = 31/45 (68%) Query: 53 LVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 + L E E+ ++ V++ GN+T AA ++ I+R +L +KLK+YG+ Sbjct: 471 MTLDENERAHIEWVLELAGGNRTHAAKVLDIDRASLWRKLKRYGL 515 >UniRef50_A4J593 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J593_DESRM Length = 582 Score = 54.1 bits (129), Expect = 2e-06, Method: Composition-based stats. Identities = 18/44 (40%), Positives = 28/44 (63%) Query: 54 VLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 V E E+ L+ +Q RGN++ AA ++GI R TL KL++ G+ Sbjct: 535 VAVEAEKQLILKTLQQVRGNRSEAARVLGIPRSTLYYKLRQLGI 578 >UniRef50_Q1K388 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K388_DESAC Length = 648 Score = 54.1 bits (129), Expect = 2e-06, Method: Composition-based stats. Identities = 15/43 (34%), Positives = 29/43 (67%) Query: 55 LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 L EVE ++ ++ +RGN A+ ++GI+R T+ +K+K+Y + Sbjct: 604 LKEVEMEMVVRALEMSRGNIVHASSLLGISRNTIYRKIKEYDI 646 >UniRef50_B8FXH0 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8FXH0_DESHD Length = 703 Score = 53.7 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 18/46 (39%), Positives = 29/46 (63%) Query: 52 ELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 E L E+ +LD ++ +GN+ +AA ++GI+R L KKL KY + Sbjct: 656 EYALQAAEREILDKTLRRVQGNKVQAARILGIHRSVLYKKLAKYNI 701 >UniRef50_Q3ACE2 Sigma-54 dependent transcriptional regulator n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3ACE2_CARHZ Length = 573 Score = 53.7 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 4/54 (7%) Query: 44 GQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 GQ + +L L E+ L+ + +GN+++AA ++GI+R L K+LK + + Sbjct: 522 GQSLTNL----LEAYEKELIKAALLKAKGNKSKAANLLGISRQWLHKRLKYFNL 571 >UniRef50_Q1MP72 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains n=1 Tax=Lawsonia intracellularis PHE/MN1-00 RepID=Q1MP72_LAWIP Length = 426 Score = 53.7 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 17/43 (39%), Positives = 29/43 (67%) Query: 55 LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 L ++E L+ V++ T GN+++AA ++GI R LRKKL + + Sbjct: 382 LQQMEYNLIIRVLKQTNGNKSKAAELLGITREGLRKKLLRLKI 424 >UniRef50_Q1D245 Sigma-54 dependent DNA-binding response regulator MrpB n=3 Tax=Cystobacterineae RepID=Q1D245_MYXXD Length = 488 Score = 53.7 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 18/43 (41%), Positives = 29/43 (67%) Query: 55 LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 L E E+ L+ M T+G++ R ++GI+R TL +KL+KYG+ Sbjct: 429 LEEAERQLIARAMTVTKGHKGRTCQILGISRPTLERKLQKYGL 471 >UniRef50_C1SFR1 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SFR1_9BACT Length = 459 Score = 53.7 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 3/86 (3%) Query: 13 VSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRG 72 +++ + D +P + + L YF++ + D++ + E E L+ + G Sbjct: 373 TNSLTADDFKLTQPADEQEHKNLFTYFSEKYRE---DIFAKSIEECEIELIKGALDKYDG 429 Query: 73 NQTRAALMMGINRGTLRKKLKKYGMN 98 T+ A + I+R TL KL+KY + Sbjct: 430 KLTKVAEWLSISRVTLNAKLRKYNIT 455 >UniRef50_A1AME4 GAF modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Desulfuromonadales RepID=A1AME4_PELPD Length = 661 Score = 53.7 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 15/43 (34%), Positives = 26/43 (60%) Query: 55 LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 L E+E+ + + GN +AA +GI R TL +K+++YG+ Sbjct: 611 LTEMEKQAITAALHLYDGNIQKAASKLGIGRNTLYRKIREYGI 653 >UniRef50_B8FV05 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfitobacterium hafniense DCB-2 RepID=B8FV05_DESHD Length = 687 Score = 53.7 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 16/47 (34%), Positives = 32/47 (68%) Query: 52 ELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 +L LAE+E+ ++ + T + + A+ ++GI R T+ +KLK+YG++ Sbjct: 639 KLTLAEIEKEVIFEALSQTGNDASEASRILGIGRTTIYRKLKEYGID 685 >UniRef50_UPI0001788BCA sigma54 specific transcriptional regulator, Fis family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788BCA Length = 561 Score = 53.7 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 18/40 (45%), Positives = 28/40 (70%) Query: 55 LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKK 94 L E+E+ ++ V+ + NQ+RAA +GINR TL +KLK+ Sbjct: 522 LKEIEKGIIQYVLLEEKNNQSRAAERLGINRATLWRKLKE 561 >UniRef50_B8DM67 Sigma54 specific transcriptional regulator with PAS/PAC sensor, Fis family n=1 Tax=Desulfovibrio vulgaris str. 'Miyazaki F' RepID=B8DM67_DESVM Length = 567 Score = 53.7 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 31/58 (53%) Query: 40 AQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 AQ L ++++E+ L+ +Q T + AA ++G R TL +K+K+YGM Sbjct: 509 AQAAADMAEPLARASVSDLERRLIADALQRTGNRRGEAAELLGWGRSTLWRKMKQYGM 566 >UniRef50_C6MTS9 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Geobacter sp. M18 RepID=C6MTS9_9DELT Length = 465 Score = 53.7 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 16/41 (39%), Positives = 30/41 (73%) Query: 58 VEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 VE+ ++ V++ GN++RAA ++ I+R TL KL++YG++ Sbjct: 415 VERDHIERVLEQVEGNKSRAAKILEIDRKTLYTKLERYGLD 455 >UniRef50_Q1MPA8 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=6 Tax=Desulfovibrionaceae RepID=Q1MPA8_LAWIP Length = 492 Score = 53.7 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 17/42 (40%), Positives = 29/42 (69%) Query: 55 LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYG 96 L E+E+ ++ ++ T GN+T+AA ++GI+ TLR KL +Y Sbjct: 445 LHEMERLMIIKGLEATSGNRTQAAELLGISIRTLRNKLNEYK 486 >UniRef50_C1A4S9 Fis family transcriptional regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A4S9_GEMAT Length = 418 Score = 53.7 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 19/43 (44%), Positives = 28/43 (65%) Query: 55 LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 L VE+ + + RGN+TRAA +GI R TL +K+K+YG+ Sbjct: 375 LDAVEREAIRAALAAHRGNRTRAAQGLGIARSTLLEKIKRYGL 417 >UniRef50_Q93KC9 AorR protein n=1 Tax=Eubacterium acidaminophilum RepID=Q93KC9_EUBAC Length = 518 Score = 53.7 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 32/70 (45%), Gaps = 2/70 (2%) Query: 29 DSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTL 88 V+ ++N + Y+ L +E+ + ++ N ++ A +GI R TL Sbjct: 449 ACVQPCMRNDEYSAKKSEEEKHYD--LHALEKEHITRALEECGYNISKTARKLGIARNTL 506 Query: 89 RKKLKKYGMN 98 KK++ + +N Sbjct: 507 YKKIRDFSIN 516 >UniRef50_Q6SFF6 Transcriptional regulator, Fis family n=3 Tax=Bacteria RepID=Q6SFF6_9BACT Length = 475 Score = 53.7 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 45/91 (49%) Query: 7 NSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMV 66 N ++ S+ PL + + ++++ ++ + +L +E ++ Sbjct: 376 NPKIVFFIRDISRRLTADHPLTERLPRSIEQITERVGRHPLKELVRESTDVIEALCIEAA 435 Query: 67 MQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 ++ TR N+ AA ++G++R +L KL++YG+ Sbjct: 436 LKLTRDNRASAAEILGLSRQSLYTKLRRYGI 466 >UniRef50_C1P9P9 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Bacillaceae RepID=C1P9P9_BACCO Length = 457 Score = 53.7 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 16/42 (38%), Positives = 29/42 (69%) Query: 56 AEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 +E+ L++ ++ GN++ AA +GI+R TL +KLKK+G+ Sbjct: 414 ENMEKQLIEKALRKAGGNKSAAAKELGISRVTLYQKLKKFGI 455 >UniRef50_A6G018 Two component, sigma54 specific, transcriptional regulator, Fis family protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G018_9DELT Length = 628 Score = 53.7 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 19/39 (48%), Positives = 28/39 (71%) Query: 55 LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLK 93 LAE+EQ + ++ T GN+ RAA ++GI+R TL +KLK Sbjct: 586 LAELEQQAIAAALEATGGNKARAAALLGIDRTTLYRKLK 624 >UniRef50_Q0EZK5 Transcriptional regulatory protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EZK5_9PROT Length = 453 Score = 53.3 bits (127), Expect = 2e-06, Method: Composition-based stats. Identities = 16/43 (37%), Positives = 29/43 (67%) Query: 53 LVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKY 95 L + ++E+ L++ + + +GN+T AA ++GI+ TLR KL Y Sbjct: 403 LSIRDMERALIEKTLVHVKGNRTEAAQLLGISIRTLRNKLHAY 445 >UniRef50_D0XNN9 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Brevundimonas subvibrioides ATCC 15264 RepID=D0XNN9_9CAUL Length = 465 Score = 53.3 bits (127), Expect = 2e-06, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 4/75 (5%) Query: 25 KPLRDSVKQALKNYFAQLNGQDVNDLYE----LVLAEVEQPLLDMVMQYTRGNQTRAALM 80 +PL +V A+ N A Q + + +A++E+ L+ + + GN+T AA + Sbjct: 367 QPLMGAVGGAVDNGLAGRAAQTADAVSRAYVGQTVAQMEKTLILDTLTHCLGNRTHAANI 426 Query: 81 MGINRGTLRKKLKKY 95 +GI+ TLR KL +Y Sbjct: 427 LGISIRTLRNKLNEY 441 >UniRef50_C0STX4 Putative transcriptional regulator n=3 Tax=Rhodococcus RepID=C0STX4_9NOCA Length = 608 Score = 53.3 bits (127), Expect = 2e-06, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 27/43 (62%) Query: 56 AEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 + E+ +D ++ GN++RAA ++GI R TL +K++ ++ Sbjct: 556 EQAERDAIDGALREAGGNRSRAAEILGIGRTTLYRKMRSLKID 598 >UniRef50_B0K4W6 GAF modulated sigma54 specific transcriptional regulator, Fis family n=5 Tax=Thermoanaerobacteraceae RepID=B0K4W6_THEPX Length = 576 Score = 53.3 bits (127), Expect = 2e-06, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 2/67 (2%) Query: 33 QALKNYFA--QLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRK 90 L +Y + Q ++ N L E+E+ + ++++ GN T+ A +GI R TL + Sbjct: 507 SHLPSYLSGSQTIRENSNSFSSTSLIELEKQEISQLLEHYGGNITKVAKALGIARNTLYR 566 Query: 91 KLKKYGM 97 KL KYG+ Sbjct: 567 KLYKYGL 573 >UniRef50_Q2LRZ0 Sigma-54 dependent transcriptional regulator n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LRZ0_SYNAS Length = 473 Score = 53.3 bits (127), Expect = 2e-06, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 46/80 (57%), Gaps = 3/80 (3%) Query: 19 QDQVTQKPLRDSVKQ-ALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRA 77 +DQ + P + +L+ ++G D++ + + E+E+ L+ + +GN+TRA Sbjct: 389 EDQGSVSPAAEEKTSCSLEEVSTDISGIDLS--RGMTIWEMEKELIFSTLDKVKGNKTRA 446 Query: 78 ALMMGINRGTLRKKLKKYGM 97 + ++GI+ T+R KL++Y M Sbjct: 447 SEILGISVRTMRNKLQEYQM 466 >UniRef50_C0RGQ3 Transcriptional regulator, Fis family protein n=43 Tax=Alphaproteobacteria RepID=C0RGQ3_BRUMB Length = 433 Score = 53.3 bits (127), Expect = 2e-06, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 26/43 (60%) Query: 55 LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 +AE E+ ++ + GN + AA ++GI+R TL +KL + + Sbjct: 387 MAESERGVILRALARAEGNISAAAQLLGISRATLHRKLNRLKI 429 >UniRef50_B6B3N6 Transcriptional regulator PpsR n=2 Tax=Rhodobacterales RepID=B6B3N6_9RHOB Length = 470 Score = 53.3 bits (127), Expect = 2e-06, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 41/77 (53%) Query: 21 QVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALM 80 + + P++ + +++ + G + D+ +E+ ++ ++ T N+ AA M Sbjct: 390 ETVRTPMQQITEVDMRSVIELIGGHSLKDIVAKSTDVIEKMCIETAVEMTSNNRVAAAEM 449 Query: 81 MGINRGTLRKKLKKYGM 97 +G++R +L KL+KYG+ Sbjct: 450 LGLSRQSLYVKLRKYGL 466 >UniRef50_D2R5F6 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R5F6_9PLAN Length = 482 Score = 53.3 bits (127), Expect = 2e-06, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 34/48 (70%) Query: 50 LYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 + + LA+VE+ LL+ ++ +R N++RAA ++GI+R L ++L + G+ Sbjct: 411 VLDDFLADVEKQLLERALRESRNNKSRAAELLGISRARLLRRLAQLGL 458 >UniRef50_A5CY60 Transcriptional activator of acetoin/glycerol metabolism n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5CY60_PELTS Length = 692 Score = 53.3 bits (127), Expect = 2e-06, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 32/53 (60%) Query: 45 QDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 + ++ L +E+ ++ ++ T GN TRAA +G+ R TL +K+KKYG+ Sbjct: 636 EVPPPQFDDNLESLEKRAVEEALKQTGGNITRAAGRLGVTRKTLYRKIKKYGI 688 >UniRef50_Q3JAP9 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Proteobacteria RepID=Q3JAP9_NITOC Length = 470 Score = 53.3 bits (127), Expect = 2e-06, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 7/76 (9%) Query: 21 QVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALM 80 P+ S + F L+G +VL E+++ +++ V++ N AA Sbjct: 391 GQANSPVGSSPAASPDQVFLPLDGS-------MVLEEMDRYIIETVLRRNDYNIAAAARA 443 Query: 81 MGINRGTLRKKLKKYG 96 +G R TLR +++K+G Sbjct: 444 LGTTRETLRYRIQKHG 459 >UniRef50_A4J6T1 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Bacteria RepID=A4J6T1_DESRM Length = 512 Score = 53.3 bits (127), Expect = 2e-06, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 40/84 (47%) Query: 15 TVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQ 74 ++ DQ L V + + + + ++ L + E+E ++ +++ GN Sbjct: 426 DLDQLDQQALLDLYHKVDGLYRAIHRTMGKKGITTVFPLTIQELEARAIEETLEFFNGNV 485 Query: 75 TRAALMMGINRGTLRKKLKKYGMN 98 + +A +GI R TL +K K+Y +N Sbjct: 486 SMSARALGIGRNTLYRKAKEYNIN 509 >UniRef50_Q1JZC1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JZC1_DESAC Length = 455 Score = 53.3 bits (127), Expect = 2e-06, Method: Composition-based stats. Identities = 18/43 (41%), Positives = 27/43 (62%) Query: 55 LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 L +EQ L+ + RG Q +AA ++GI+R L+ KLKKY + Sbjct: 412 LETIEQKLIQAALIDARGVQAKAAELLGISRSNLQYKLKKYHL 454 >UniRef50_C9S255 Proprionate catabolism activator, Fis family n=2 Tax=Geobacillus RepID=C9S255_GEOSY Length = 639 Score = 53.3 bits (127), Expect = 2e-06, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 39/63 (61%), Gaps = 1/63 (1%) Query: 36 KNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKY 95 + + + + D DL + V E+ + V++ RG++T+AA ++GI+R TL +K+K Y Sbjct: 564 ELFGSHIEILDSTDLTKEVENW-ERQRILQVLREVRGSKTKAAALLGISRTTLWRKIKDY 622 Query: 96 GMN 98 G++ Sbjct: 623 GID 625 >UniRef50_A4J616 Two component, sigma54 specific, transcriptional regulator, Fis family n=10 Tax=Bacteria RepID=A4J616_DESRM Length = 454 Score = 53.3 bits (127), Expect = 2e-06, Method: Composition-based stats. Identities = 17/41 (41%), Positives = 27/41 (65%) Query: 57 EVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 EVE+ L+ ++ + GNQTRAA ++GI R L + +KY + Sbjct: 412 EVEKELILKALEKSNGNQTRAAQLLGITRSALLYRAQKYRL 452 >UniRef50_D2L943 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L943_9DELT Length = 482 Score = 53.3 bits (127), Expect = 3e-06, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 36/64 (56%) Query: 34 ALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLK 93 +L Y + L+E ++ ++ ++ T GN+++AA ++G++R TL K++ Sbjct: 408 SLARYVRRELASGRESLFEDLMDRFGLLVIREALEATGGNRSQAARLLGLSRPTLLAKIE 467 Query: 94 KYGM 97 KYG+ Sbjct: 468 KYGL 471 >UniRef50_B9JLC5 Transcriptional regulator protein n=8 Tax=Alphaproteobacteria RepID=B9JLC5_AGRRK Length = 322 Score = 52.9 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 18/42 (42%), Positives = 28/42 (66%) Query: 56 AEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 A E+ ++ + T GN + AA++MGI+R TL +KLKK G+ Sbjct: 280 ATAERSVIQRALARTSGNISAAAMIMGISRATLHRKLKKLGL 321 >UniRef50_A6TWZ7 Sigma54 specific transcriptional regulator, Fis family n=24 Tax=Clostridiaceae RepID=A6TWZ7_ALKMQ Length = 645 Score = 52.9 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 3/63 (4%) Query: 39 FAQLNGQDVNDLYEL---VLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKY 95 + + + +Y L L ++E+ + V+ GN ++AA +GI R TL +K+ KY Sbjct: 564 LSSTSNESSPRVYSLESEPLEDMEKRHIHQVLTKYEGNVSQAAEALGIGRNTLYRKMAKY 623 Query: 96 GMN 98 ++ Sbjct: 624 KID 626 >UniRef50_A6GK43 Transcriptional regulator, NifA subfamily, Fis Family (Fragment) n=3 Tax=cellular organisms RepID=A6GK43_9DELT Length = 952 Score = 52.9 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 17/41 (41%), Positives = 30/41 (73%) Query: 55 LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKY 95 + +E+ L+D M+ T NQT+AA ++G++R L+KKLK++ Sbjct: 908 IERLERELIDRAMKRTNNNQTQAAKLLGLSRYGLQKKLKRF 948 >UniRef50_C4XL32 NtrC family two-component response regulator n=4 Tax=Proteobacteria RepID=C4XL32_DESMR Length = 452 Score = 52.9 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 17/45 (37%), Positives = 32/45 (71%) Query: 53 LVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 + L E+E+ + ++ Y GN+TRAA ++GI+R +L +K+K+ G+ Sbjct: 405 IALEELERRHIRDILTYCDGNKTRAAEILGIDRVSLWRKVKRLGL 449 >UniRef50_B8FWA2 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8FWA2_DESHD Length = 597 Score = 52.9 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 30/48 (62%) Query: 51 YELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 ++ L ++E+ ++ ++ GN+T+AA ++ ++R L KL KY +N Sbjct: 549 HQDRLGQIERDMIAAALEKAGGNKTKAAKLLNLSRSRLYDKLNKYDLN 596 >UniRef50_B5ZRP5 Transcriptional regulator, Fis family n=6 Tax=Rhizobium RepID=B5ZRP5_RHILW Length = 319 Score = 52.9 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 16/44 (36%), Positives = 29/44 (65%) Query: 55 LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 + E E+ L + T GN ++AA+ +GI+R TL +K+KK+ ++ Sbjct: 276 IVEAEKAALLRALSRTSGNVSQAAVALGISRATLHRKMKKFDLH 319 >UniRef50_A7HD97 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Deltaproteobacteria RepID=A7HD97_ANADF Length = 452 Score = 52.9 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 28/44 (63%) Query: 54 VLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 + + E+ + V++ G + AA ++GI++ TL +KLK+YG+ Sbjct: 406 AIDDAEREHIRRVLERCGGRRGEAARLLGIDKSTLWRKLKRYGL 449 >UniRef50_Q1D6H5 Sigma-54 dependent DNA-binding response regulator n=7 Tax=Myxococcales RepID=Q1D6H5_MYXXD Length = 474 Score = 52.9 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 34/49 (69%) Query: 49 DLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 D+ + AE+E+ L+ ++ T GN TRAA ++ I+R +L+ K+K++G+ Sbjct: 412 DIVRMKAAELERDLIVKKLEETGGNVTRAARLLQISRKSLQTKMKEFGL 460 >UniRef50_B8FGV0 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FGV0_DESAA Length = 765 Score = 52.9 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 38/59 (64%), Gaps = 1/59 (1%) Query: 39 FAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 +L G++ L E V A E+ + +++ + N++RAA ++G++R TL +K+K+YG+ Sbjct: 708 LPKLLGKEEPTLKE-VAAAAEREYIIQLLERYKWNRSRAAEILGVDRRTLFRKIKEYGL 765 >UniRef50_Q893M0 Putative sigma-54 interacting protein n=1 Tax=Clostridium tetani RepID=Q893M0_CLOTE Length = 595 Score = 52.9 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 32/59 (54%) Query: 39 FAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 F + D+ E+ + +E+ ++ ++ N+T+ + +GI+R TL K+K++ + Sbjct: 536 FDESKHVTPIDIKEITIRNMEREIIIEALEKCDWNRTKTSKSLGISRRTLYNKMKEFNI 594 >UniRef50_A9AYM8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AYM8_HERA2 Length = 385 Score = 52.9 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 18/44 (40%), Positives = 30/44 (68%) Query: 55 LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 L VE+ LL +Q GN+TRAA ++G++R L +L+K+G++ Sbjct: 342 LEVVERSLLQQALQQANGNKTRAAELLGLSRHQLLYRLEKHGLS 385 >UniRef50_Q4JMY3 Predicted nitrogen regulation protein VV0196 n=1 Tax=uncultured bacterium BAC13K9BAC RepID=Q4JMY3_9BACT Length = 467 Score = 52.9 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 42/79 (53%), Gaps = 10/79 (12%) Query: 19 QDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAA 78 + ++ L + ++ L QD+NDL L ++E+ LL ++ ++G + AA Sbjct: 399 SNGNWEESLSNHIRSVL---------QDMNDLTNLS-KDLEKILLQEALKASKGRRIDAA 448 Query: 79 LMMGINRGTLRKKLKKYGM 97 ++GI R T+ +K+K G+ Sbjct: 449 KILGIGRNTITRKIKDLGL 467 >UniRef50_C1SIN5 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SIN5_9BACT Length = 431 Score = 52.9 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 15/40 (37%), Positives = 27/40 (67%) Query: 59 EQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 E+ L+ ++ T GN+T+AA ++ I+R TL KLK++ + Sbjct: 391 ERDLIIKALKKTGGNKTKAAEILQISRRTLHNKLKEFDLE 430 >UniRef50_B8DQ12 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfovibrio vulgaris str. 'Miyazaki F' RepID=B8DQ12_DESVM Length = 474 Score = 52.9 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 18/45 (40%), Positives = 31/45 (68%) Query: 54 VLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 +LA E L++ ++ GN TRAA +G++R TL +K+KK+G++ Sbjct: 420 ILAHNEAALIENALREQGGNVTRAASALGVSRATLYEKMKKHGVH 464 >UniRef50_D1N7U7 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N7U7_9BACT Length = 462 Score = 52.9 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 13/36 (36%), Positives = 25/36 (69%) Query: 59 EQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKK 94 E+ L++ + GN+T+AA ++GI+R TL ++L + Sbjct: 426 ERKLIEKALAECNGNRTQAAKLLGISRRTLHRRLAE 461 >UniRef50_Q214B6 Sigma-54 factor, interaction region n=1 Tax=Rhodopseudomonas palustris BisB18 RepID=Q214B6_RHOPB Length = 628 Score = 52.9 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 17/46 (36%), Positives = 32/46 (69%) Query: 52 ELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 E VL ++E+ L+ + T GN+ +A++++GI+ TL +K K+YG+ Sbjct: 583 ENVLEKMERDLIAEALDITTGNREKASIILGISPSTLGRKKKQYGL 628 >UniRef50_C0Z8K3 Probable transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z8K3_BREBN Length = 577 Score = 52.9 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 3/62 (4%) Query: 39 FAQLNGQDVNDLYELV---LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKY 95 L D + + L E E+ + ++ + GN ++AA M+ I R TL +K+++Y Sbjct: 507 LEGLMEADPPESSDHAIPSLRETERIAIKKALEKSGGNVSKAAKMLEIGRNTLYRKIEEY 566 Query: 96 GM 97 + Sbjct: 567 QI 568 >UniRef50_B8FEY3 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Deltaproteobacteria RepID=B8FEY3_DESAA Length = 460 Score = 52.5 bits (125), Expect = 3e-06, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 1/81 (1%) Query: 18 SQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRA 77 + D ++ L + +++ N LYE L+ VEQ ++ M + Q+ A Sbjct: 376 NSDAISVNDLPRELTRSVSNTLHMEGIPVDATLYET-LSMVEQAMIKRAMLMSDNVQSHA 434 Query: 78 ALMMGINRGTLRKKLKKYGMN 98 A ++GI + L +K+KK+G++ Sbjct: 435 AQILGIGKSGLNQKIKKFGLD 455 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_D2U2K4 tRNA-dihydrouridine synthase B n=1 Tax=Arsenopho... 127 1e-28 UniRef50_A5UD91 DNA-binding protein fis n=80 Tax=Gammaproteobact... 110 2e-23 UniRef50_C4LAF3 DNA-binding protein fis n=186 Tax=Gammaproteobac... 103 2e-21 UniRef50_Q3JC89 DNA-binding protein Fis n=2 Tax=Nitrosococcus oc... 102 5e-21 UniRef50_Q2P860 DNA-binding protein n=5 Tax=Xanthomonadaceae Rep... 101 9e-21 UniRef50_C0N365 Transcriptional regulator, Fis family protein n=... 100 1e-20 UniRef50_A5WFX3 Transcriptional regulator, Fis family n=3 Tax=Pr... 100 1e-20 UniRef50_Q87D75 Putative fis-like DNA-binding protein n=14 Tax=X... 100 2e-20 UniRef50_P64130 Putative fis-like DNA-binding protein n=12 Tax=B... 100 3e-20 UniRef50_Q1QA76 Helix-turn-helix, Fis-type n=18 Tax=Moraxellacea... 99 3e-20 UniRef50_Q5ZY31 DNA binding protein Fis n=6 Tax=Legionella RepID... 99 4e-20 UniRef50_A8PNI1 Nitrogen assimilation regulatory protein n=1 Tax... 98 6e-20 UniRef50_Q0AB23 Helix-turn-helix, Fis-type n=1 Tax=Alkalilimnico... 98 7e-20 UniRef50_C1HVR1 Factor-for-inversion-stimulation protein n=13 Ta... 98 8e-20 UniRef50_A8G0V0 DNA-binding protein fis n=30 Tax=Gammaproteobact... 98 9e-20 UniRef50_A6SUQ0 Transcriptional regulator, Fis family n=59 Tax=B... 98 1e-19 UniRef50_Q0VMY6 DNA-binding protein Fis n=5 Tax=Proteobacteria R... 97 2e-19 UniRef50_B8GUU9 Factor for inversion stimulation Fis transcripti... 97 2e-19 UniRef50_B9ZKT5 Transcriptional regulator, Fis family n=2 Tax=Pr... 95 5e-19 UniRef50_C5S9C5 Transcriptional regulator, Fis family n=1 Tax=Al... 95 7e-19 UniRef50_A1WYK3 Transcriptional regulator, Fis family n=1 Tax=Ha... 94 9e-19 UniRef50_Q607L3 DNA-binding protein Fis n=1 Tax=Methylococcus ca... 93 2e-18 UniRef50_Q1QV70 DNA-binding protein Fis n=3 Tax=Gammaproteobacte... 93 3e-18 UniRef50_Q15Z87 Helix-turn-helix, Fis-type n=6 Tax=Proteobacteri... 93 4e-18 UniRef50_A4BSG3 Helix-turn-helix, Fis-type n=1 Tax=Nitrococcus m... 93 4e-18 UniRef50_Q9HUW0 Putative fis-like DNA-binding protein n=31 Tax=G... 92 5e-18 UniRef50_Q2YCT0 DNA-binding protein Fis n=6 Tax=Betaproteobacter... 92 5e-18 UniRef50_Q057I0 DNA-bending protein n=1 Tax=Buchnera aphidicola ... 92 6e-18 UniRef50_B5ELA9 Transcriptional regulator, Fis family n=3 Tax=Ac... 92 7e-18 UniRef50_A9I8G0 DNA-binding protein fis n=8 Tax=Betaproteobacter... 91 8e-18 UniRef50_Q31II7 DNA-binding protein Fis n=2 Tax=Proteobacteria R... 91 1e-17 UniRef50_D0L1E4 Transcriptional regulator, Fis family n=1 Tax=Ha... 91 1e-17 UniRef50_C7R7C1 Transcriptional regulator, Fis family n=1 Tax=Ka... 90 2e-17 UniRef50_C8PZT0 DNA-binding protein for site-specific recombinat... 89 5e-17 UniRef50_A0Z0J4 Factor for inversion stimulation Fis, transcript... 89 6e-17 UniRef50_B5JYA4 Transcriptional regulator, Fis family protein n=... 88 7e-17 UniRef50_Q8Y231 Putative fis-like DNA-binding protein n=10 Tax=B... 88 8e-17 UniRef50_C5V629 Transcriptional regulator, Fis family n=2 Tax=Be... 88 1e-16 UniRef50_Q1YVH9 DNA-binding protein Fis n=2 Tax=unclassified Gam... 87 1e-16 UniRef50_A9KGN0 DNA-binding protein fis n=5 Tax=Coxiella burneti... 87 2e-16 UniRef50_Q5FTP8 Nitrogen assimilation regulatory protein NtrC n=... 86 2e-16 UniRef50_A1B9J9 Two component, sigma54 specific, transcriptional... 86 2e-16 UniRef50_A4A6T5 DNA-binding protein fis n=2 Tax=unclassified Gam... 85 6e-16 UniRef50_A0LDW4 Nitrogen metabolism transcriptional regulator, N... 85 6e-16 UniRef50_Q04848 Nitrogen assimilation regulatory protein ntrC n=... 84 2e-15 UniRef50_A1ATK4 Two component, sigma54 specific, transcriptional... 82 5e-15 UniRef50_Q475R3 DNA-binding protein Fis n=15 Tax=Betaproteobacte... 82 6e-15 UniRef50_P09432 Nitrogen regulation protein ntrC n=20 Tax=Rhodob... 81 7e-15 UniRef50_C7RNK7 Transcriptional regulator, Fis family n=2 Tax=Be... 81 1e-14 UniRef50_A5ICP8 Fis transcriptional activator n=6 Tax=Legionella... 80 2e-14 UniRef50_A5IBL2 DNA-binding protein fis n=6 Tax=Legionella RepID... 80 2e-14 UniRef50_C3WC23 Nitrogen assimilation regulatory protein n=5 Tax... 80 3e-14 UniRef50_B8KW02 Transcriptional regulator, Fis family protein n=... 79 3e-14 UniRef50_B7RVT1 Transcriptional regulator, Fis family protein n=... 79 3e-14 UniRef50_Q1GGX2 Two component, sigma54 specific, transcriptional... 79 3e-14 UniRef50_D2U436 Two-component system, NtrC family, nitrogen regu... 79 5e-14 UniRef50_Q0F179 Putative transcriptional regulator, Fis family p... 78 7e-14 UniRef50_A1AXL9 Helix-turn-helix, Fis-type n=3 Tax=Bacteria RepI... 78 8e-14 UniRef50_A8DVY9 Predicted protein (Fragment) n=1 Tax=Nematostell... 78 8e-14 UniRef50_Q0FAI5 Response regulator containing CheY-like receiver... 78 9e-14 UniRef50_B5YK68 Transcriptional regulator n=1 Tax=Thermodesulfov... 78 1e-13 UniRef50_D2LEK1 Sigma54 specific transcriptional regulator, Fis ... 78 1e-13 UniRef50_Q8ABU5 RteB, two-component system response regulator n=... 77 2e-13 UniRef50_Q893M0 Putative sigma-54 interacting protein n=1 Tax=Cl... 76 2e-13 UniRef50_A4J599 Sigma54 specific transcriptional regulator, Fis ... 76 3e-13 UniRef50_Q6SFF6 Transcriptional regulator, Fis family n=3 Tax=Ba... 76 3e-13 UniRef50_Q0A511 GAF modulated sigma54 specific transcriptional r... 76 4e-13 UniRef50_B9XL82 Two component, sigma54 specific, transcriptional... 76 5e-13 UniRef50_B5JH96 Sigma-54 interaction domain family n=1 Tax=Verru... 75 6e-13 UniRef50_A3ZZY0 Nitrogen assimilation regulatory protein n=1 Tax... 75 6e-13 UniRef50_A9FB29 Sigma-54 dependent DNA-binding response regulato... 75 7e-13 UniRef50_C5TGC5 Transcriptional regulator, Fis family n=2 Tax=Zy... 75 8e-13 UniRef50_Q8KZ53 Transcriptional regulator, PpsR putative n=1 Tax... 75 9e-13 UniRef50_C0GH19 Sigma54 specific transcriptional regulator, Fis ... 74 9e-13 UniRef50_D2R2G6 Sigma54 specific transcriptional regulator, Fis ... 74 1e-12 UniRef50_C4XRA9 Transcriptional regulatory protein ZraR n=9 Tax=... 74 1e-12 UniRef50_Q2G705 Two component, sigma54 specific, transcriptional... 74 2e-12 UniRef50_C0GEJ3 PAS modulated sigma54 specific transcriptional r... 74 2e-12 UniRef50_UPI00016C44AF cetoacetate metabolism regulatory protein... 74 2e-12 UniRef50_A5CY60 Transcriptional activator of acetoin/glycerol me... 74 2e-12 UniRef50_C3WJS3 Nitrogen assimilation regulatory protein n=9 Tax... 74 2e-12 UniRef50_D0LIH3 Two component, sigma54 specific, transcriptional... 73 2e-12 UniRef50_P28787 Nitrogen regulation protein NR(I) n=29 Tax=Gamma... 73 2e-12 UniRef50_C9PYW1 Sigma-54-dependent transcriptional regulator n=5... 73 2e-12 UniRef50_A0LND9 Two component, sigma54 specific, transcriptional... 73 3e-12 UniRef50_C8W252 PAS modulated sigma54 specific transcriptional r... 73 3e-12 UniRef50_Q7USH9 Nitrogen assimilation regulatory protein n=1 Tax... 73 3e-12 UniRef50_A4J593 Sigma54 specific transcriptional regulator, Fis ... 73 3e-12 UniRef50_B6B3N6 Transcriptional regulator PpsR n=2 Tax=Rhodobact... 73 3e-12 UniRef50_D2R3W1 Sigma54 specific transcriptional regulator, Fis ... 73 3e-12 UniRef50_A4J6T1 Two component, sigma54 specific, transcriptional... 73 4e-12 UniRef50_B9R473 Transcriptional regulator PpsR n=1 Tax=Labrenzia... 73 4e-12 UniRef50_A5GBB3 Two component, sigma-54 specific, transcriptiona... 73 4e-12 UniRef50_A7HD97 Two component, sigma54 specific, transcriptional... 73 4e-12 UniRef50_A6TWZ7 Sigma54 specific transcriptional regulator, Fis ... 72 4e-12 UniRef50_A6UCY3 Two component, sigma54 specific, transcriptional... 72 4e-12 UniRef50_Q6MRN6 Site-specific DNA inversion stimulation factor n... 72 4e-12 UniRef50_Q3B305 Two component transcriptional regulator, Fis fam... 72 5e-12 UniRef50_Q1CWG7 Sigma-54 dependent DNA-binding response regulato... 72 5e-12 UniRef50_Q16DR6 Transcriptional regulator PpsR n=2 Tax=Roseobact... 72 5e-12 UniRef50_UPI00016C4268 cetoacetate metabolism regulatory protein... 72 5e-12 UniRef50_A5EVU6 Two-component response regulator PilR n=2 Tax=Ca... 72 6e-12 UniRef50_D2LGI6 Transcriptional regulator PpsR, Fis family n=1 T... 72 6e-12 UniRef50_Q1PYM7 Similar to sigma 54 response regulator n=1 Tax=C... 72 6e-12 UniRef50_C6MTS9 Two component, sigma54 specific, transcriptional... 72 6e-12 UniRef50_Q2LQP1 Transcrption factor sigma 54 type n=4 Tax=Deltap... 72 6e-12 UniRef50_C9RBQ4 Two component, sigma54 specific, transcriptional... 72 7e-12 UniRef50_Q7UJV2 Nitrogen regulation protein NR(I) n=1 Tax=Rhodop... 72 7e-12 UniRef50_B4UAL8 Two component, sigma54 specific, transcriptional... 72 7e-12 UniRef50_D2R311 Two component, sigma54 specific, transcriptional... 71 8e-12 UniRef50_Q0AVD1 Putative uncharacterized protein n=1 Tax=Syntrop... 71 8e-12 UniRef50_A4IPF8 Transcriptional regulator n=6 Tax=Bacillales Rep... 71 8e-12 UniRef50_A5D511 Transcriptional regulator n=1 Tax=Pelotomaculum ... 71 9e-12 UniRef50_A0Q2I8 Aco operon expression regulatory protein n=24 Ta... 71 9e-12 UniRef50_C1ZHW1 Response regulator with CheY-like receiver, AAA-... 71 9e-12 UniRef50_Q0C0N3 Nitrogen regulation protein NR(I) n=1 Tax=Hyphom... 71 9e-12 UniRef50_B0TAU8 Sigma-54 dependent transcriptional regulator n=1... 71 1e-11 UniRef50_D2MHT4 Two component, sigma54 specific, transcriptional... 71 1e-11 UniRef50_C6BWX2 Two component, sigma54 specific, transcriptional... 71 1e-11 UniRef50_C8WT15 PAS modulated sigma54 specific transcriptional r... 71 1e-11 UniRef50_Q3ABV5 Sigma-54 dependent transcriptional regulator n=3... 71 1e-11 UniRef50_B8DM67 Sigma54 specific transcriptional regulator with ... 71 1e-11 UniRef50_Q8ES30 Transcriptional regulator n=1 Tax=Oceanobacillus... 71 1e-11 UniRef50_C5AV92 Transcriptional regulator PpsR-CrtJ; Fis family ... 71 1e-11 UniRef50_Q28W31 Transcriptional regulator PpsR n=10 Tax=Rhodobac... 71 1e-11 UniRef50_A3ZS60 Nitrogen assimilation regulatory protein n=1 Tax... 71 1e-11 UniRef50_A5WGF4 Nitrogen metabolism transcriptional regulator, N... 71 1e-11 UniRef50_A6CEU3 Acetoacetate metabolism regulatory protein atoC ... 71 1e-11 UniRef50_Q93KC9 AorR protein n=1 Tax=Eubacterium acidaminophilum... 71 2e-11 UniRef50_D0MKJ7 Sigma54 specific transcriptional regulator, Fis ... 70 2e-11 UniRef50_B9JZ35 Transcriptional regulator n=2 Tax=Alphaproteobac... 70 2e-11 UniRef50_A4A0N6 Two-component system, regulatory protein n=1 Tax... 70 2e-11 UniRef50_C6HWP3 Sigma54 specific transcriptional regulator, Fis ... 70 2e-11 UniRef50_A7GG75 Sensory box sigma-54 dependent transcriptional r... 70 2e-11 UniRef50_B8FV05 Sigma54 specific transcriptional regulator, Fis ... 70 2e-11 UniRef50_B5JI58 Sigma-54 interaction domain family n=1 Tax=Verru... 70 2e-11 UniRef50_D2R4P1 Two component, sigma54 specific, transcriptional... 70 2e-11 UniRef50_D0XMN2 Transcriptional regulator PpsR, Fis family n=1 T... 70 2e-11 UniRef50_UPI00016C585F ornithine decarboxylase inhibitor-putativ... 70 2e-11 UniRef50_C1PFE6 GAF modulated sigma54 specific transcriptional r... 70 3e-11 UniRef50_D0LSA1 Sigma54 specific transcriptional regulator, Fis ... 70 3e-11 UniRef50_A6DT60 Sigma-54 dependent transcriptional regulator/res... 70 3e-11 UniRef50_Q3A203 Two component signal transduction response regul... 69 3e-11 UniRef50_D0LAB0 Helix-turn-helix Fis-type n=1 Tax=Gordonia bronc... 69 3e-11 UniRef50_B5YI45 Transcriptional activator n=1 Tax=Thermodesulfov... 69 3e-11 UniRef50_Q39QH6 Sigma54 specific transcriptional regulator with ... 69 4e-11 UniRef50_C8WZA1 Sigma54 specific transcriptional regulator, Fis ... 69 4e-11 UniRef50_A5G7F8 Two component, sigma-54 specific, transcriptiona... 69 4e-11 UniRef50_A3ESN7 Putative two component, sigma54 specific, transc... 69 4e-11 UniRef50_B0K4W6 GAF modulated sigma54 specific transcriptional r... 69 4e-11 UniRef50_A1AME4 GAF modulated sigma54 specific transcriptional r... 69 4e-11 UniRef50_C1P9P9 PAS modulated sigma54 specific transcriptional r... 69 4e-11 UniRef50_C6W7H2 Two component, sigma54 specific, transcriptional... 69 4e-11 UniRef50_A3PJU4 GAF modulated sigma54 specific transcriptional r... 69 5e-11 UniRef50_A3WHU7 Transcriptional regulator PpsR1; Fis family prot... 69 5e-11 UniRef50_P26047 Signal-transduction and transcriptional-control ... 69 5e-11 UniRef50_A3EPR9 Putative two component, sigma54 specific, transc... 69 5e-11 UniRef50_A8MEN4 Putative sigma54 specific transcriptional regula... 69 5e-11 UniRef50_Q2TJQ8 PpsR2 n=1 Tax=Thiocapsa roseopersicina RepID=Q2T... 69 5e-11 UniRef50_B5YJY4 Response regulator HsfA n=1 Tax=Thermodesulfovib... 69 5e-11 UniRef50_B8DQD3 Two component, sigma54 specific, transcriptional... 69 5e-11 UniRef50_C1A979 NtrC family two-component response regulator n=1... 69 6e-11 UniRef50_C0Z8K3 Probable transcriptional regulator n=1 Tax=Brevi... 68 6e-11 UniRef50_Q1K1J7 Response regulator receiver protein n=1 Tax=Desu... 68 7e-11 UniRef50_B5YK20 Response regulator HsfA n=1 Tax=Thermodesulfovib... 68 7e-11 UniRef50_B8FGV0 PAS modulated sigma54 specific transcriptional r... 68 7e-11 UniRef50_P0AFB9 Nitrogen regulation protein NR(I) n=502 Tax=Bact... 68 7e-11 UniRef50_C7LP79 Two component, sigma54 specific, transcriptional... 68 7e-11 UniRef50_D2EVL6 Putative uncharacterized protein n=3 Tax=Bactero... 68 7e-11 UniRef50_Q07RZ7 Transcriptional regulator, Fis family / DNA-bind... 68 8e-11 UniRef50_Q4UYV5 Transcriptional regulator n=5 Tax=Xanthomonas Re... 68 8e-11 UniRef50_B8DQ72 Two component, sigma54 specific, transcriptional... 68 8e-11 UniRef50_C1ZLR0 Response regulator with CheY-like receiver, AAA-... 68 8e-11 UniRef50_B5JMF6 Sigma-54 interaction domain family n=2 Tax=Verru... 68 8e-11 UniRef50_Q0A929 Sigma54 specific transcriptional regulator, Fis ... 68 8e-11 UniRef50_C8QYP0 Two component, sigma54 specific, transcriptional... 68 8e-11 UniRef50_C9S255 Proprionate catabolism activator, Fis family n=2... 68 9e-11 UniRef50_A8FHB1 Transcriptional regulator n=1 Tax=Bacillus pumil... 68 9e-11 UniRef50_D2R521 Two component, sigma54 specific, transcriptional... 68 9e-11 UniRef50_C0QUD7 Nitrogen assimilation regulatory protein n=1 Tax... 68 9e-11 UniRef50_D0LUW9 Sigma54 specific transcriptional regulator, Fis ... 68 1e-10 UniRef50_B8J7L3 Two component, sigma54 specific, transcriptional... 68 1e-10 UniRef50_B8FEL6 PAS modulated sigma54 specific transcriptional r... 68 1e-10 UniRef50_D0LHR5 Two component, sigma54 specific, transcriptional... 68 1e-10 UniRef50_B2A2S4 PAS modulated sigma54 specific transcriptional r... 68 1e-10 UniRef50_UPI00016C3E44 probable response regulatory protein (ato... 68 1e-10 UniRef50_C7RB54 Two component, sigma54 specific, transcriptional... 68 1e-10 UniRef50_UPI0001972FEB sigma-54 factor, interaction region n=1 T... 68 1e-10 UniRef50_A9CI57 Transcriptional regulator n=6 Tax=Rhizobiaceae R... 68 1e-10 UniRef50_Q0RWI0 Transcriptional regulator n=1 Tax=Rhodococcus jo... 68 1e-10 UniRef50_Q1D5E1 Sigma-54 dependent transcriptional regulator, Fi... 68 1e-10 UniRef50_C0STX4 Putative transcriptional regulator n=3 Tax=Rhodo... 67 1e-10 UniRef50_C6JUF7 PchR n=3 Tax=Pseudomonas RepID=C6JUF7_PSEFL 67 1e-10 UniRef50_Q3AQY4 Transcriptional regulator, Fis family / DNA-bind... 67 2e-10 UniRef50_Q1YV60 Putative polar flagellar protein FlaK n=1 Tax=ga... 67 2e-10 UniRef50_A7HBA5 Two component, sigma54 specific, transcriptional... 67 2e-10 UniRef50_A4ACP0 Transcriptional regulator PpsR n=2 Tax=unclassif... 67 2e-10 UniRef50_B5YG95 FrgC n=1 Tax=Thermodesulfovibrio yellowstonii DS... 67 2e-10 UniRef50_Q8RE11 Acetoacetate metabolism regulatory protein atoC ... 67 2e-10 UniRef50_C6IXE0 Transcriptional regulator n=1 Tax=Paenibacillus ... 67 2e-10 UniRef50_A6M003 Two component, sigma54 specific, transcriptional... 67 2e-10 UniRef50_Q1Q0T6 Strongly similar to sigma 54 response regulator ... 67 2e-10 UniRef50_Q02BY0 Sigma54 specific transcriptional regulator, Fis ... 67 2e-10 UniRef50_B4U6M7 PAS modulated sigma54 specific transcriptional r... 67 2e-10 UniRef50_A5EQ87 DNA-binding protein Fis / transcriptional regula... 67 2e-10 UniRef50_B8DK61 Two component, sigma54 specific, transcriptional... 67 2e-10 UniRef50_B1KVR7 Sigma-54 dependent transcriptional regulator n=1... 67 2e-10 UniRef50_C8N8F3 DNA-binding protein Fis n=1 Tax=Cardiobacterium ... 67 2e-10 UniRef50_B3DV39 DNA-binding response regulator, NtrC family (Con... 67 2e-10 UniRef50_Q1IQS1 Two component, sigma54 specific, transcriptional... 67 2e-10 UniRef50_D0LQ47 Sigma54 specific transcriptional regulator, Fis ... 67 2e-10 UniRef50_D2L943 Two component, sigma54 specific, transcriptional... 67 2e-10 UniRef50_D1N7U7 Two component, sigma54 specific, transcriptional... 67 2e-10 UniRef50_B5EFV3 Two component, sigma54 specific, transcriptional... 67 2e-10 UniRef50_Q1ITP4 Two component, sigma54 specific, transcriptional... 67 2e-10 UniRef50_Q24ZH2 Putative uncharacterized protein n=1 Tax=Desulfi... 67 2e-10 UniRef50_Q6MNL0 Putative uncharacterized protein n=1 Tax=Bdellov... 66 3e-10 UniRef50_Q2LXW1 Sigma-54 dependent transcription regulator n=1 T... 66 3e-10 UniRef50_C0QAK8 Putative nitrogen assimilation regulatory protei... 66 3e-10 UniRef50_B9M8I4 Two component, sigma54 specific, transcriptional... 66 3e-10 UniRef50_C2W7W3 Transcriptional regulator n=4 Tax=Bacillus RepID... 66 3e-10 UniRef50_B3WV21 Transcriptional regulatory protein ZraR (Fragmen... 66 3e-10 UniRef50_C1SIN5 Response regulator with CheY-like receiver, AAA-... 66 3e-10 UniRef50_Q0A9V6 GAF modulated sigma54 specific transcriptional r... 66 3e-10 UniRef50_B9XIA4 Two component, sigma54 specific, transcriptional... 66 3e-10 UniRef50_Q1D6H5 Sigma-54 dependent DNA-binding response regulato... 66 3e-10 UniRef50_Q93QH0 Putative sigma 54 type regulator n=1 Tax=Breviba... 66 3e-10 UniRef50_B8FL05 Two component, sigma54 specific, transcriptional... 66 3e-10 UniRef50_Q0FYR2 Transcriptional Regulator, Fis family protein n=... 66 3e-10 UniRef50_Q1INE5 Two component, sigma54 specific, transcriptional... 66 3e-10 UniRef50_A8RIT6 Putative uncharacterized protein n=1 Tax=Clostri... 66 3e-10 UniRef50_C0QSE6 AAA family ATPase n=4 Tax=Hydrogenothermaceae Re... 66 3e-10 UniRef50_B3Q7B9 Transcriptional regulator, Fis family n=9 Tax=Br... 66 3e-10 UniRef50_Q06065 Acetoacetate metabolism regulatory protein atoC ... 66 3e-10 UniRef50_C1SGB7 Response regulator with CheY-like receiver, AAA-... 66 3e-10 UniRef50_A6KY73 Putative two-component system response regulator... 66 3e-10 UniRef50_Q9K633 Transcriptional regulator n=2 Tax=Bacillus RepID... 66 3e-10 UniRef50_B4CU93 Two component, sigma54 specific, transcriptional... 66 3e-10 UniRef50_B3E4E8 Putative sigma54 specific transcriptional regula... 66 3e-10 UniRef50_Q471V5 Helix-turn-helix, Fis-type n=1 Tax=Ralstonia eut... 66 3e-10 UniRef50_UPI0001C424D6 transcriptional regulator n=1 Tax=Bacillu... 66 3e-10 UniRef50_C4XL32 NtrC family two-component response regulator n=4... 66 3e-10 UniRef50_B2RIU9 Two-component system response regulator n=38 Tax... 66 3e-10 UniRef50_B1ZR63 Two component, sigma54 specific, transcriptional... 66 3e-10 Sequences not found previously or not previously below threshold: UniRef50_A1K4T7 Sigma-54 dependent transcriptional regulator n=4... 68 9e-11 UniRef50_C4FI59 AAA family ATPase n=1 Tax=Sulfurihydrogenibium y... 68 1e-10 UniRef50_UPI0001C34ECA sigma-54 dependent transcriptional regula... 68 1e-10 UniRef50_D2R262 Two component, sigma54 specific, transcriptional... 68 1e-10 UniRef50_Q2JA15 Transcriptional regulator n=2 Tax=Actinomycetale... 66 3e-10 UniRef50_A8MKV1 Two component, sigma54 specific, transcriptional... 66 3e-10 >UniRef50_D2U2K4 tRNA-dihydrouridine synthase B n=1 Tax=Arsenophonus nasoniae RepID=D2U2K4_9ENTR Length = 458 Score = 127 bits (319), Expect = 1e-28, Method: Composition-based stats. Identities = 90/98 (91%), Positives = 95/98 (96%) Query: 1 MFEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQ 60 MFEQR NSDVLTV+T+NSQDQ+TQKPLRDSVKQALKNYFAQLN QDVNDLYELVLAEVE+ Sbjct: 361 MFEQRGNSDVLTVATINSQDQITQKPLRDSVKQALKNYFAQLNNQDVNDLYELVLAEVEK 420 Query: 61 PLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 PLLDMVMQYTRGNQTRAALM+ INRGTLRKKLKKYGMN Sbjct: 421 PLLDMVMQYTRGNQTRAALMLSINRGTLRKKLKKYGMN 458 >UniRef50_A5UD91 DNA-binding protein fis n=80 Tax=Gammaproteobacteria RepID=FIS_HAEIE Length = 99 Score = 110 bits (275), Expect = 2e-23, Method: Composition-based stats. Identities = 77/95 (81%), Positives = 87/95 (91%) Query: 3 EQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPL 62 +QR ++D LTVS +N+Q QVT KPLRDSVKQAL+NY AQL+GQDVNDLYELVLAEVE P+ Sbjct: 4 QQRNSADALTVSVLNAQSQVTSKPLRDSVKQALRNYLAQLDGQDVNDLYELVLAEVEHPM 63 Query: 63 LDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 LDM+MQYTRGNQTRAA M+GINRGTLRKKLKKYGM Sbjct: 64 LDMIMQYTRGNQTRAANMLGINRGTLRKKLKKYGM 98 >UniRef50_C4LAF3 DNA-binding protein fis n=186 Tax=Gammaproteobacteria RepID=FIS_TOLAT Length = 99 Score = 103 bits (257), Expect = 2e-21, Method: Composition-based stats. Identities = 67/99 (67%), Positives = 84/99 (84%), Gaps = 1/99 (1%) Query: 1 MFEQRVNSDVLTVSTVNSQD-QVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVE 59 M +Q + S+ L + ++Q Q Q+PLRDSV+QAL+NY AQLNGQDV +LY++VL+EVE Sbjct: 1 MLDQTLTSEALVTTVTHAQTHQPVQRPLRDSVQQALRNYLAQLNGQDVAELYDMVLSEVE 60 Query: 60 QPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 P+LD++MQYTRGNQTRAA+MMGINRGTLRKKLKKYGMN Sbjct: 61 APMLDIIMQYTRGNQTRAAIMMGINRGTLRKKLKKYGMN 99 >UniRef50_Q3JC89 DNA-binding protein Fis n=2 Tax=Nitrosococcus oceani RepID=Q3JC89_NITOC Length = 108 Score = 102 bits (254), Expect = 5e-21, Method: Composition-based stats. Identities = 39/91 (42%), Positives = 60/91 (65%) Query: 8 SDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVM 67 T + ++ P+ + ++QAL YF +LNG D DLYE+V+ E+E PLL + Sbjct: 15 PARTTERKLTINEEQRNSPISECLRQALDEYFDRLNGHDPADLYEIVMKEIEPPLLQTTL 74 Query: 68 QYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 ++T GNQT+AA +G+NR TLRKKL++YG++ Sbjct: 75 KHTGGNQTKAAKFLGMNRSTLRKKLRQYGIS 105 >UniRef50_Q2P860 DNA-binding protein n=5 Tax=Xanthomonadaceae RepID=Q2P860_XANOM Length = 90 Score = 101 bits (252), Expect = 9e-21, Method: Composition-based stats. Identities = 41/85 (48%), Positives = 58/85 (68%) Query: 14 STVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGN 73 S +S + PLR+ V Q+++ Y L+G D +D+YE+VL E+E PL V+ + GN Sbjct: 6 SRPDSSRGAPKSPLREHVAQSVRRYLRDLDGSDADDVYEIVLREMEIPLFVEVLNHCEGN 65 Query: 74 QTRAALMMGINRGTLRKKLKKYGMN 98 Q+RAA M+GI+R TLRKKLK+YGM Sbjct: 66 QSRAAAMLGIHRATLRKKLKEYGMT 90 >UniRef50_C0N365 Transcriptional regulator, Fis family protein n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N365_9GAMM Length = 96 Score = 100 bits (250), Expect = 1e-20, Method: Composition-based stats. Identities = 42/96 (43%), Positives = 60/96 (62%) Query: 2 FEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQP 61 + + D T + + + + PL D V AL +YF QL G +LY +++ EVE P Sbjct: 1 MTKPLAKDESTCAELGVAAERSTAPLSDCVSNALSDYFQQLEGHPAANLYNMLMNEVEVP 60 Query: 62 LLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 LL + +T GNQ+RAA ++GINRGTLRKKLK+YG+ Sbjct: 61 LLKATLDHTAGNQSRAAEILGINRGTLRKKLKQYGL 96 >UniRef50_A5WFX3 Transcriptional regulator, Fis family n=3 Tax=Proteobacteria RepID=A5WFX3_PSYWF Length = 113 Score = 100 bits (250), Expect = 1e-20, Method: Composition-based stats. Identities = 37/82 (45%), Positives = 61/82 (74%) Query: 16 VNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQT 75 V+S + PLR V+QA++ YF +L G+ +LY+ +L EVE+PLL +V++ T+GNQ+ Sbjct: 31 VDSHAPQDRAPLRHHVQQAVEQYFVELEGESTTNLYQTILQEVEKPLLQVVLKQTQGNQS 90 Query: 76 RAALMMGINRGTLRKKLKKYGM 97 + A ++G+NRGTLRKK+++Y + Sbjct: 91 KTAKILGLNRGTLRKKMQQYDL 112 >UniRef50_Q87D75 Putative fis-like DNA-binding protein n=14 Tax=Xanthomonadaceae RepID=FISL_XYLFT Length = 90 Score = 100 bits (249), Expect = 2e-20, Method: Composition-based stats. Identities = 40/87 (45%), Positives = 56/87 (64%) Query: 11 LTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYT 70 + S + PLR+ V Q ++ Y L+G D NDLY +VL E+E PLL V+ + Sbjct: 3 VVPSRPEVSRGSPKSPLREHVAQVVRRYLRDLDGCDANDLYNMVLREMEIPLLVEVLNHC 62 Query: 71 RGNQTRAALMMGINRGTLRKKLKKYGM 97 GNQ+RAA ++GI+R TLRKKLK+YG+ Sbjct: 63 EGNQSRAAALLGIHRATLRKKLKEYGL 89 >UniRef50_P64130 Putative fis-like DNA-binding protein n=12 Tax=Betaproteobacteria RepID=FISL_NEIMA Length = 79 Score = 99.9 bits (248), Expect = 3e-20, Method: Composition-based stats. Identities = 33/77 (42%), Positives = 53/77 (68%) Query: 21 QVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALM 80 T + ++Q L+ YF LNG + +Y++VL +VE+PLL VM+ GNQ++A++M Sbjct: 2 PHTLPDISQCIRQNLEQYFKDLNGTEPCGVYDMVLHQVEKPLLVCVMEQCGGNQSKASVM 61 Query: 81 MGINRGTLRKKLKKYGM 97 +G+NR TLRKKL ++G+ Sbjct: 62 LGLNRNTLRKKLIQHGL 78 >UniRef50_Q1QA76 Helix-turn-helix, Fis-type n=18 Tax=Moraxellaceae RepID=Q1QA76_PSYCK Length = 118 Score = 99.5 bits (247), Expect = 3e-20, Method: Composition-based stats. Identities = 42/96 (43%), Positives = 64/96 (66%) Query: 2 FEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQP 61 +E+ + + V + +PLR V++ ++ YFA L + DLYEL+L E+EQP Sbjct: 22 YEEDYHRSIRNVESALDDTGHAHEPLRIHVERVVRQYFAMLGDEIPTDLYELILKEIEQP 81 Query: 62 LLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 LL +V++ +RGNQT+ A ++G+NRGTLRKKLK YG+ Sbjct: 82 LLSVVLEKSRGNQTKCAQILGLNRGTLRKKLKIYGL 117 >UniRef50_Q5ZY31 DNA binding protein Fis n=6 Tax=Legionella RepID=Q5ZY31_LEGPH Length = 93 Score = 99.1 bits (246), Expect = 4e-20, Method: Composition-based stats. Identities = 38/83 (45%), Positives = 60/83 (72%) Query: 13 VSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRG 72 ++T+++ T L +SV Q+++ YF++L G D DLY+ VL E+E PL VM++ + Sbjct: 1 MTTISNDAGDTTASLAESVTQSVQKYFSELKGTDPVDLYQFVLEEIETPLFRAVMEHCKY 60 Query: 73 NQTRAALMMGINRGTLRKKLKKY 95 NQ+RAA+M+GI+RGTLR KL++Y Sbjct: 61 NQSRAAIMLGISRGTLRTKLRRY 83 >UniRef50_A8PNI1 Nitrogen assimilation regulatory protein n=1 Tax=Rickettsiella grylli RepID=A8PNI1_9COXI Length = 96 Score = 98.3 bits (244), Expect = 6e-20, Method: Composition-based stats. Identities = 45/80 (56%), Positives = 64/80 (80%) Query: 18 SQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRA 77 + Q+PL+ V+QAL+NYF+QL+G ++LY LVLAEVE PLL++V++ TRGNQT+A Sbjct: 16 ASAGTPQQPLKTYVEQALENYFSQLDGNSPSNLYGLVLAEVESPLLEVVLRQTRGNQTKA 75 Query: 78 ALMMGINRGTLRKKLKKYGM 97 A ++GI+RGTLRKKLK+ + Sbjct: 76 AKLLGISRGTLRKKLKQCDL 95 >UniRef50_Q0AB23 Helix-turn-helix, Fis-type n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0AB23_ALHEH Length = 95 Score = 98.3 bits (244), Expect = 7e-20, Method: Composition-based stats. Identities = 43/94 (45%), Positives = 61/94 (64%) Query: 4 QRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLL 63 ++ + T S+ + PLR++V +AL YF QLNG D L++LV+ EVE PL+ Sbjct: 2 EQQSPAKTTNSSTGAHGNSAIAPLREAVSEALGQYFQQLNGHDCYGLHQLVMREVEVPLI 61 Query: 64 DMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 M Y GNQTRAA ++GINRGTLR+KL++Y + Sbjct: 62 QAAMDYADGNQTRAAQLLGINRGTLRRKLREYQL 95 >UniRef50_C1HVR1 Factor-for-inversion-stimulation protein n=13 Tax=Betaproteobacteria RepID=C1HVR1_NEIGO Length = 79 Score = 98.0 bits (243), Expect = 8e-20, Method: Composition-based stats. Identities = 32/76 (42%), Positives = 51/76 (67%) Query: 22 VTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMM 81 + ++Q L YF LNG + +Y++VL +VE+PLL VM+ GNQ++A++M+ Sbjct: 3 PATADIAQCIEQNLNQYFKDLNGTEPCGVYDMVLHQVEKPLLVCVMEQCGGNQSKASVML 62 Query: 82 GINRGTLRKKLKKYGM 97 G+NR TLRKKL ++G+ Sbjct: 63 GLNRNTLRKKLIQHGL 78 >UniRef50_A8G0V0 DNA-binding protein fis n=30 Tax=Gammaproteobacteria RepID=FIS_SHESH Length = 101 Score = 98.0 bits (243), Expect = 9e-20, Method: Composition-based stats. Identities = 59/101 (58%), Positives = 81/101 (80%), Gaps = 3/101 (2%) Query: 1 MFEQRVNSD--VLTVSTVNSQDQVTQKPL-RDSVKQALKNYFAQLNGQDVNDLYELVLAE 57 MF+Q N++ LTV + + + + L RD+VK+A+ N+FAQ++GQ+ ++YE+VL+E Sbjct: 1 MFDQTTNTETHQLTVGKIETANGTIKPQLLRDAVKRAVTNFFAQMDGQEAEEVYEMVLSE 60 Query: 58 VEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 VE PLLD++MQ+TRGNQTRAA M+GINRGTLRKKLKKYGMN Sbjct: 61 VEAPLLDIIMQHTRGNQTRAANMLGINRGTLRKKLKKYGMN 101 >UniRef50_A6SUQ0 Transcriptional regulator, Fis family n=59 Tax=Betaproteobacteria RepID=A6SUQ0_JANMA Length = 126 Score = 97.6 bits (242), Expect = 1e-19, Method: Composition-based stats. Identities = 34/90 (37%), Positives = 59/90 (65%) Query: 8 SDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVM 67 + T N +++ +++ VK++L+ YF L Q +++YE+V+ VE+P+L+ VM Sbjct: 36 RARQIIKTRNQPSTMSKDNIQEVVKKSLEKYFKDLGEQMPSNVYEMVVFTVEKPILEAVM 95 Query: 68 QYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 + GNQ+ AA M+GINR TLRKKL+++ + Sbjct: 96 ERAEGNQSHAADMLGINRNTLRKKLQQHDL 125 >UniRef50_Q0VMY6 DNA-binding protein Fis n=5 Tax=Proteobacteria RepID=Q0VMY6_ALCBS Length = 110 Score = 96.8 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 44/96 (45%), Positives = 68/96 (70%) Query: 2 FEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQP 61 + ++ + T LR+ V+++L +YF QL+G+ V++LY +VLAE+E P Sbjct: 14 LTEMNTAEARKQPHLTIARSETHDTLRNCVRRSLNDYFNQLDGEAVSELYPMVLAEMEIP 73 Query: 62 LLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 LL+ V++YTRGNQT+AA ++G+NRGTLRKKLK+YG+ Sbjct: 74 LLEKVLEYTRGNQTKAAELLGLNRGTLRKKLKQYGL 109 >UniRef50_B8GUU9 Factor for inversion stimulation Fis transcriptional activator-like protein n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GUU9_THISH Length = 86 Score = 96.8 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 36/75 (48%), Positives = 59/75 (78%) Query: 24 QKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGI 83 K L +V Q+L++YFA+L G + + L+ +V+ EVE+PLL+ V+++ GNQ++AA +G+ Sbjct: 10 AKTLSLAVHQSLEDYFARLEGHEPDGLFRMVMEEVERPLLECVLRHCEGNQSKAAQYLGL 69 Query: 84 NRGTLRKKLKKYGMN 98 NRGTLRKKLK++G++ Sbjct: 70 NRGTLRKKLKQHGIS 84 >UniRef50_B9ZKT5 Transcriptional regulator, Fis family n=2 Tax=Proteobacteria RepID=B9ZKT5_9GAMM Length = 110 Score = 95.3 bits (236), Expect = 5e-19, Method: Composition-based stats. Identities = 38/71 (53%), Positives = 53/71 (74%) Query: 27 LRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRG 86 L +SV+ AL YF L+GQ +DLY LV+ EVE+PLL V++ GNQ+RAA ++G+NR Sbjct: 26 LAESVRNALDQYFETLDGQSSHDLYALVMNEVERPLLACVLERCNGNQSRAAALLGLNRA 85 Query: 87 TLRKKLKKYGM 97 TLRKKL+ +G+ Sbjct: 86 TLRKKLRAHGL 96 >UniRef50_C5S9C5 Transcriptional regulator, Fis family n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5S9C5_CHRVI Length = 102 Score = 94.9 bits (235), Expect = 7e-19, Method: Composition-based stats. Identities = 32/87 (36%), Positives = 57/87 (65%) Query: 12 TVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTR 71 + + D PL V+ A++ Y + G ++ DLY+LV+ EVE+PL ++V+ +T+ Sbjct: 15 PATGLAPDDHRHAAPLSQCVRAAVEAYLTNMAGHEIEDLYDLVMQEVERPLFELVLHHTQ 74 Query: 72 GNQTRAALMMGINRGTLRKKLKKYGMN 98 GN ++AA ++G+ R TLRK+LK +G++ Sbjct: 75 GNLSQAARLLGLTRNTLRKRLKAHGID 101 >UniRef50_A1WYK3 Transcriptional regulator, Fis family n=1 Tax=Halorhodospira halophila SL1 RepID=A1WYK3_HALHL Length = 98 Score = 94.5 bits (234), Expect = 9e-19, Method: Composition-based stats. Identities = 42/73 (57%), Positives = 58/73 (79%) Query: 26 PLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINR 85 P+R++V +AL +YF +L+G D N LY LVL EVE PLL+ VM Y GNQTRAA ++G+NR Sbjct: 24 PIREAVTRALDDYFRELDGHDCNGLYRLVLNEVEVPLLESVMDYCSGNQTRAAQLLGLNR 83 Query: 86 GTLRKKLKKYGMN 98 TLRKKL+++G++ Sbjct: 84 ATLRKKLREHGID 96 >UniRef50_Q607L3 DNA-binding protein Fis n=1 Tax=Methylococcus capsulatus RepID=Q607L3_METCA Length = 96 Score = 93.3 bits (231), Expect = 2e-18, Method: Composition-based stats. Identities = 34/72 (47%), Positives = 54/72 (75%) Query: 27 LRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRG 86 L + V+ AL NY +QL+G V D+Y LV+ EVE+PL+ V+++ NQTRAA ++G++R Sbjct: 25 LSEQVRAALVNYLSQLDGISVTDMYTLVMGEVERPLIRTVLEHCCHNQTRAAQLLGLSRS 84 Query: 87 TLRKKLKKYGMN 98 TLRKK++++G+ Sbjct: 85 TLRKKMQQHGIE 96 >UniRef50_Q1QV70 DNA-binding protein Fis n=3 Tax=Gammaproteobacteria RepID=Q1QV70_CHRSD Length = 99 Score = 92.6 bits (229), Expect = 3e-18, Method: Composition-based stats. Identities = 48/95 (50%), Positives = 64/95 (67%) Query: 3 EQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPL 62 Q D T+ + Q+ LR+SV+ A++ YF L+G+ V DLY +VL EVE PL Sbjct: 4 RQAFPIDQNTLDAGATTSPAHQQTLRESVELAMQRYFGHLDGETVTDLYAMVLTEVEVPL 63 Query: 63 LDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 L+ VM+Y GNQTRAA M+G+NRGTLRKKLK+Y + Sbjct: 64 LEAVMRYADGNQTRAADMLGLNRGTLRKKLKQYEL 98 >UniRef50_Q15Z87 Helix-turn-helix, Fis-type n=6 Tax=Proteobacteria RepID=Q15Z87_PSEA6 Length = 97 Score = 92.6 bits (229), Expect = 4e-18, Method: Composition-based stats. Identities = 63/98 (64%), Positives = 76/98 (77%), Gaps = 1/98 (1%) Query: 1 MFEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQ 60 MFEQ V S T T SQ Q QKPLRDSVKQA+ Y QL+ D+ +LYELV+AEVE Sbjct: 1 MFEQNVTSPFTTTVTTPSQTQ-AQKPLRDSVKQAVNKYLKQLDNTDIENLYELVMAEVEA 59 Query: 61 PLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 P+L+ +M +TRGNQTRA++M+GINRGTLRKKLK+YGMN Sbjct: 60 PMLEEIMTFTRGNQTRASIMLGINRGTLRKKLKQYGMN 97 >UniRef50_A4BSG3 Helix-turn-helix, Fis-type n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BSG3_9GAMM Length = 100 Score = 92.6 bits (229), Expect = 4e-18, Method: Composition-based stats. Identities = 38/73 (52%), Positives = 52/73 (71%) Query: 26 PLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINR 85 P+R V++AL+ YF +L + + LY++VL EVE PLL VM+ GN T+AA M+GINR Sbjct: 27 PIRACVREALEGYFRRLEDCECSGLYKMVLTEVEIPLLQAVMRVCSGNLTKAAQMLGINR 86 Query: 86 GTLRKKLKKYGMN 98 TLRKKL+ YG+ Sbjct: 87 STLRKKLQYYGLE 99 >UniRef50_Q9HUW0 Putative fis-like DNA-binding protein n=31 Tax=Gammaproteobacteria RepID=FISL_PSEAE Length = 104 Score = 92.2 bits (228), Expect = 5e-18, Method: Composition-based stats. Identities = 46/91 (50%), Positives = 63/91 (69%) Query: 7 NSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMV 66 SD + + + LRDSV++AL NYFA L GQ V D+Y +VL EVE PLL+ V Sbjct: 13 VSDNANLKQHLTTPTQEGQTLRDSVEKALHNYFAHLEGQPVTDVYNMVLCEVEAPLLETV 72 Query: 67 MQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 M + +GNQT+A+ ++G+NRGTLRKKLK+Y + Sbjct: 73 MNHVKGNQTKASELLGLNRGTLRKKLKQYDL 103 >UniRef50_Q2YCT0 DNA-binding protein Fis n=6 Tax=Betaproteobacteria RepID=Q2YCT0_NITMU Length = 80 Score = 92.2 bits (228), Expect = 5e-18, Method: Composition-based stats. Identities = 30/76 (39%), Positives = 55/76 (72%) Query: 22 VTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMM 81 + + + V++ +++YF L+G+ + ++E+V+ VE+PL+++VM+ GNQTRAA ++ Sbjct: 4 INENDIARCVRKTVEDYFNDLDGEKPHAIHEMVIRSVEKPLIELVMERAGGNQTRAAELL 63 Query: 82 GINRGTLRKKLKKYGM 97 GINR TLR K+K+Y + Sbjct: 64 GINRNTLRNKMKQYQI 79 >UniRef50_Q057I0 DNA-bending protein n=1 Tax=Buchnera aphidicola str. Cc (Cinara cedri) RepID=Q057I0_BUCCC Length = 108 Score = 91.8 bits (227), Expect = 6e-18, Method: Composition-based stats. Identities = 48/95 (50%), Positives = 70/95 (73%), Gaps = 1/95 (1%) Query: 1 MFEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQ 60 MF++ N+ VS + +Q++ L D VK ALKNYF +L ++ N+LY++ L+++E+ Sbjct: 1 MFKKNKNNSQFIVSKIINQEKFA-FSLEDCVKLALKNYFFKLIDKNENNLYKIFLSKIEK 59 Query: 61 PLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKY 95 PL D VMQ+TRGNQT+AA+++GINRGTLRKKL Y Sbjct: 60 PLFDSVMQFTRGNQTQAAIILGINRGTLRKKLNIY 94 >UniRef50_B5ELA9 Transcriptional regulator, Fis family n=3 Tax=Acidithiobacillus RepID=B5ELA9_ACIF5 Length = 80 Score = 91.8 bits (227), Expect = 7e-18, Method: Composition-based stats. Identities = 31/76 (40%), Positives = 45/76 (59%) Query: 23 TQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMG 82 T L D V + Y A L G+ +L+ L++ EVE+ LL +Q+ G + AA +G Sbjct: 4 TNMSLGDCVIHVMDRYLADLGGEVPGNLHALIVEEVERALLAHTLQHCGGQRGMAAQWLG 63 Query: 83 INRGTLRKKLKKYGMN 98 INR TLRKKL+ YG++ Sbjct: 64 INRNTLRKKLQTYGLD 79 >UniRef50_A9I8G0 DNA-binding protein fis n=8 Tax=Betaproteobacteria RepID=A9I8G0_BORPD Length = 79 Score = 91.4 bits (226), Expect = 8e-18, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 51/71 (71%) Query: 27 LRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRG 86 L D V+ +L+ YF L + +D++++V+ VE+P+L++ +Q + GNQ+RA+ M+GI R Sbjct: 7 LEDCVRASLERYFEDLGESEPHDMWDMVMRCVERPVLEVALQRSGGNQSRASEMLGITRN 66 Query: 87 TLRKKLKKYGM 97 TLRKKL+ + + Sbjct: 67 TLRKKLQAHNI 77 >UniRef50_Q31II7 DNA-binding protein Fis n=2 Tax=Proteobacteria RepID=Q31II7_THICR Length = 87 Score = 90.6 bits (224), Expect = 1e-17, Method: Composition-based stats. Identities = 34/84 (40%), Positives = 55/84 (65%) Query: 15 TVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQ 74 T+ S + L V LKNYF L G+ +D+Y++V+++VE+PL++ V+ T NQ Sbjct: 2 TLLSDKNPASQALSTHVTMTLKNYFETLEGEVPSDVYQMVISQVERPLIEFVLNETAFNQ 61 Query: 75 TRAALMMGINRGTLRKKLKKYGMN 98 +R+A ++GINR TLRKK++ Y + Sbjct: 62 SRSAEILGINRNTLRKKMQLYKIT 85 >UniRef50_D0L1E4 Transcriptional regulator, Fis family n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0L1E4_HALNC Length = 106 Score = 90.6 bits (224), Expect = 1e-17, Method: Composition-based stats. Identities = 33/83 (39%), Positives = 54/83 (65%) Query: 15 TVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQ 74 +N+ + P++ +V+ AL + L G ++LY+LV+A++E+PLL+ M NQ Sbjct: 19 CLNTDEAHGDNPVQQAVRAALDALWETLEGDQPSNLYDLVIAQIERPLLETAMMRCEQNQ 78 Query: 75 TRAALMMGINRGTLRKKLKKYGM 97 +RAA +GINR TLRKKLK++ + Sbjct: 79 SRAAECLGINRSTLRKKLKQHQL 101 >UniRef50_C7R7C1 Transcriptional regulator, Fis family n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7R7C1_KANKD Length = 101 Score = 89.9 bits (222), Expect = 2e-17, Method: Composition-based stats. Identities = 40/98 (40%), Positives = 67/98 (68%), Gaps = 1/98 (1%) Query: 1 MFEQRVNSDVLT-VSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVE 59 +F+ + + + V+ + LR+ V +++NY Q++GQ ++++Y+LVL +VE Sbjct: 3 IFDTNLTRESNNQDNPVDGNSFASNPTLREHVAMSMQNYLKQMHGQPLSEVYDLVLTQVE 62 Query: 60 QPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 +PLL +M YTR NQT+AA ++G+NRGTLRKKLK+Y + Sbjct: 63 EPLLRAIMDYTRNNQTKAAQVLGLNRGTLRKKLKRYNL 100 >UniRef50_C8PZT0 DNA-binding protein for site-specific recombination, transcription of rRNA and tRNA operons and DNA replication n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PZT0_9GAMM Length = 109 Score = 88.7 bits (219), Expect = 5e-17, Method: Composition-based stats. Identities = 33/84 (39%), Positives = 53/84 (63%) Query: 14 STVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGN 73 +T L ++ ++ YF L Q LYEL+L++ E+PL+ +V+++TRGN Sbjct: 25 TTHTPSQTSPSASLAHHIELVVREYFDNLKEQQPTQLYELMLSQFEKPLISVVLEHTRGN 84 Query: 74 QTRAALMMGINRGTLRKKLKKYGM 97 QT+ A ++G+NRGTLRKKLK + + Sbjct: 85 QTKTAEILGLNRGTLRKKLKTHQL 108 >UniRef50_A0Z0J4 Factor for inversion stimulation Fis, transcriptional activator n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z0J4_9GAMM Length = 84 Score = 88.7 bits (219), Expect = 6e-17, Method: Composition-based stats. Identities = 40/82 (48%), Positives = 61/82 (74%) Query: 16 VNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQT 75 ++ V +PLR+S K+++ ++F QL+G DL+ LVLA+VE+PL VMQ T GNQ+ Sbjct: 2 TTEKNPVQPRPLRESAKESITHFFEQLDGATCTDLHALVLAQVEEPLFRAVMQETCGNQS 61 Query: 76 RAALMMGINRGTLRKKLKKYGM 97 +AA ++G+NRGTLRKKL++Y + Sbjct: 62 KAAAILGLNRGTLRKKLRQYHL 83 >UniRef50_B5JYA4 Transcriptional regulator, Fis family protein n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JYA4_9GAMM Length = 77 Score = 88.3 bits (218), Expect = 7e-17, Method: Composition-based stats. Identities = 38/73 (52%), Positives = 52/73 (71%) Query: 24 QKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGI 83 PLR+SV+Q +K+Y LNG+ + +Y+LV+ EVE LL VM++ NQ+ AA +GI Sbjct: 3 PAPLRNSVEQVMKDYLTALNGEKPHGMYKLVVGEVEAALLKCVMEHVDHNQSHAADCLGI 62 Query: 84 NRGTLRKKLKKYG 96 NRGTLRKKLK +G Sbjct: 63 NRGTLRKKLKDHG 75 >UniRef50_Q8Y231 Putative fis-like DNA-binding protein n=10 Tax=Betaproteobacteria RepID=FISL_RALSO Length = 77 Score = 87.9 bits (217), Expect = 8e-17, Method: Composition-based stats. Identities = 29/76 (38%), Positives = 56/76 (73%) Query: 22 VTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMM 81 +++ P+ ++ +L Y+ L+G++ +++Y++VL +E+PLL+ VM++ NQ+ AA + Sbjct: 1 MSRNPIERCIRDSLDTYYRDLDGENPSNVYDMVLQAIERPLLETVMEWASNNQSLAADYL 60 Query: 82 GINRGTLRKKLKKYGM 97 GINR TLRKKL+++G+ Sbjct: 61 GINRNTLRKKLQQHGL 76 >UniRef50_C5V629 Transcriptional regulator, Fis family n=2 Tax=Betaproteobacteria RepID=C5V629_9PROT Length = 81 Score = 87.6 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 33/80 (41%), Positives = 55/80 (68%), Gaps = 1/80 (1%) Query: 20 DQVTQKPLRDSVKQALKNYFAQLNGQDVN-DLYELVLAEVEQPLLDMVMQYTRGNQTRAA 78 + + + V+QAL YF+ L+G++ D+Y++V+ VE+PL++MV+ GNQ+RA+ Sbjct: 2 SAINENEMARYVRQALSEYFSDLDGEEPGCDVYDMVMNCVEKPLVEMVLAQVGGNQSRAS 61 Query: 79 LMMGINRGTLRKKLKKYGMN 98 M+GINR TLRKK+ +G+ Sbjct: 62 AMLGINRNTLRKKMLLHGIE 81 >UniRef50_Q1YVH9 DNA-binding protein Fis n=2 Tax=unclassified Gammaproteobacteria RepID=Q1YVH9_9GAMM Length = 93 Score = 87.2 bits (215), Expect = 1e-16, Method: Composition-based stats. Identities = 43/89 (48%), Positives = 61/89 (68%) Query: 9 DVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQ 68 + + Q+ L+ SV +A++ YF+ L+GQ +DLY++V+AEVE PLL VM Sbjct: 4 AEADTGSTPKDPRSKQQSLQQSVTEAMQRYFSDLDGQATHDLYDIVMAEVEPPLLKAVMA 63 Query: 69 YTRGNQTRAALMMGINRGTLRKKLKKYGM 97 YTR NQ+RAA +G+NRGTLRKKLK+Y + Sbjct: 64 YTRQNQSRAAETLGLNRGTLRKKLKQYDL 92 >UniRef50_A9KGN0 DNA-binding protein fis n=5 Tax=Coxiella burnetii RepID=A9KGN0_COXBN Length = 103 Score = 86.8 bits (214), Expect = 2e-16, Method: Composition-based stats. Identities = 39/76 (51%), Positives = 61/76 (80%) Query: 23 TQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMG 82 T + SV+Q+L++YFA+L+G+D +LY +VLAE+E PLL +VM+YT+ NQ++AA ++G Sbjct: 24 TGQSFASSVQQSLQSYFARLDGEDPVNLYSMVLAEMEVPLLRVVMRYTKNNQSKAAKILG 83 Query: 83 INRGTLRKKLKKYGMN 98 ++RGTLRKKL Y ++ Sbjct: 84 LSRGTLRKKLAIYQID 99 >UniRef50_Q5FTP8 Nitrogen assimilation regulatory protein NtrC n=1 Tax=Gluconobacter oxydans RepID=Q5FTP8_GLUOX Length = 246 Score = 86.4 bits (213), Expect = 2e-16, Method: Composition-based stats. Identities = 31/97 (31%), Positives = 55/97 (56%), Gaps = 2/97 (2%) Query: 4 QRVNSDVLTVSTVNSQDQVTQKP--LRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQP 61 QR+ + ++ + T +P L ++++ L Y DL+ V+ EVE+P Sbjct: 143 QRLGPERISAVCRLAAGTGTARPRGLERALERPLAEYLEGDLENGAGDLHACVVGEVERP 202 Query: 62 LLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 L+ MV++ T GNQ RAA ++G+NR TLRK++++ + Sbjct: 203 LITMVLRRTCGNQLRAAAILGVNRNTLRKRIRELDIT 239 >UniRef50_A1B9J9 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Rhodobacteraceae RepID=A1B9J9_PARDP Length = 485 Score = 86.4 bits (213), Expect = 2e-16, Method: Composition-based stats. Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 1/90 (1%) Query: 10 VLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQ-DVNDLYELVLAEVEQPLLDMVMQ 68 + + V + L SV+ L+ YF LY+ +L E+E+PLL++ + Sbjct: 388 ISPAAPVTPLGEPANMRLAQSVEMHLQRYFDLHGDDLPPPGLYDRILREIEKPLLEIALD 447 Query: 69 YTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 T GNQ R A ++GINR TLRKKL + Sbjct: 448 ATGGNQLRCADLLGINRNTLRKKLTDLNIE 477 >UniRef50_A4A6T5 DNA-binding protein fis n=2 Tax=unclassified Gammaproteobacteria RepID=A4A6T5_9GAMM Length = 119 Score = 85.2 bits (210), Expect = 6e-16, Method: Composition-based stats. Identities = 39/83 (46%), Positives = 58/83 (69%) Query: 16 VNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQT 75 + + T LR++V ++ Y +++G+ D Y LVL+EVE PLL VM+YTR NQ+ Sbjct: 31 TQTSEAATVASLREAVDLFVRRYLDEMDGEMSTDFYNLVLSEVEAPLLKAVMEYTRQNQS 90 Query: 76 RAALMMGINRGTLRKKLKKYGMN 98 RA+ M+G+NRGTLRKKLK+Y ++ Sbjct: 91 RASAMLGLNRGTLRKKLKQYAID 113 >UniRef50_A0LDW4 Nitrogen metabolism transcriptional regulator, NtrC, Fis Family n=3 Tax=Proteobacteria RepID=A0LDW4_MAGSM Length = 504 Score = 85.2 bits (210), Expect = 6e-16, Method: Composition-based stats. Identities = 30/81 (37%), Positives = 51/81 (62%) Query: 18 SQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRA 77 S + T + Q L +FA + G + + +Y++VL ++E L+ V++ TRGN+ +A Sbjct: 423 STESNTSHSYEAILLQDLDTFFATMGGLETSGVYDMVLRKMEAVLIPRVLRQTRGNRVKA 482 Query: 78 ALMMGINRGTLRKKLKKYGMN 98 A ++GINR TLRKK++ GM+ Sbjct: 483 AQILGINRNTLRKKMRDLGMD 503 >UniRef50_Q04848 Nitrogen assimilation regulatory protein ntrC n=122 Tax=Alphaproteobacteria RepID=NTRC_AZOC5 Length = 480 Score = 83.7 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 1/87 (1%) Query: 12 TVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQ-DVNDLYELVLAEVEQPLLDMVMQYT 70 + S+D L SV++ L YF+ LY +L +VE PLL + T Sbjct: 387 PAPSALSEDGPVDATLGASVERHLNGYFSGFGEDLPPPGLYHRILRDVEYPLLSAALAAT 446 Query: 71 RGNQTRAALMMGINRGTLRKKLKKYGM 97 RGNQ +AA ++G+NR TLRKK++ + Sbjct: 447 RGNQIKAAELLGLNRNTLRKKIRDLDI 473 >UniRef50_A1ATK4 Two component, sigma54 specific, transcriptional regulator, Fis family n=12 Tax=Deltaproteobacteria RepID=A1ATK4_PELPD Length = 480 Score = 82.2 bits (202), Expect = 5e-15, Method: Composition-based stats. Identities = 26/81 (32%), Positives = 45/81 (55%) Query: 18 SQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRA 77 + L V+ L++ + D +D++ VL +VE+PL+ +++ TR NQ +A Sbjct: 396 TAMTPQDASLEAIVEAKLRSCLTGIEKLDKSDIHAKVLQQVERPLIRFILEKTRWNQVKA 455 Query: 78 ALMMGINRGTLRKKLKKYGMN 98 A ++GINR TLRKK+ + Sbjct: 456 ADILGINRNTLRKKIHDLEIE 476 >UniRef50_Q475R3 DNA-binding protein Fis n=15 Tax=Betaproteobacteria RepID=Q475R3_RALEJ Length = 77 Score = 81.8 bits (201), Expect = 6e-15, Method: Composition-based stats. Identities = 30/76 (39%), Positives = 52/76 (68%) Query: 22 VTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMM 81 +++ + ++ +L +YF L+G++ +++Y +VL VE+PLL+ VM NQ+ AA + Sbjct: 1 MSRNAIDQCIRDSLDSYFRDLDGEEPSNMYNMVLEAVERPLLEAVMVRAERNQSLAAAYL 60 Query: 82 GINRGTLRKKLKKYGM 97 GINR TLRKKL+ +G+ Sbjct: 61 GINRNTLRKKLQLHGL 76 >UniRef50_P09432 Nitrogen regulation protein ntrC n=20 Tax=Rhodobacterales RepID=NTRC_RHOCA Length = 457 Score = 81.4 bits (200), Expect = 7e-15, Method: Composition-based stats. Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 1/74 (1%) Query: 25 KPLRDSVKQALKNYFAQLNGQ-DVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGI 83 + L S+ + L+ YF G LY+ +LAE+E PL+++ + T GNQ + A ++GI Sbjct: 375 EKLSASIARHLRRYFDLHGGNLPPPGLYDRILAEMEAPLIEIALDATGGNQAKCADLLGI 434 Query: 84 NRGTLRKKLKKYGM 97 NR TLRKK+ + Sbjct: 435 NRNTLRKKITDLDI 448 >UniRef50_C7RNK7 Transcriptional regulator, Fis family n=2 Tax=Betaproteobacteria RepID=C7RNK7_9PROT Length = 81 Score = 81.0 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 33/77 (42%), Positives = 53/77 (68%) Query: 21 QVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALM 80 Q + + V +AL++YF L+G+ +YE+V+ VE+P+L++V++ RGNQT AA + Sbjct: 3 QNNDEHVAVCVGKALESYFETLDGEKPAAVYEMVIKMVERPMLEVVLKQARGNQTLAAEI 62 Query: 81 MGINRGTLRKKLKKYGM 97 +GINR TLRKKL + + Sbjct: 63 LGINRNTLRKKLIDHKL 79 >UniRef50_A5ICP8 Fis transcriptional activator n=6 Tax=Legionella RepID=A5ICP8_LEGPC Length = 95 Score = 80.2 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 36/84 (42%), Positives = 52/84 (61%), Gaps = 1/84 (1%) Query: 13 VSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVN-DLYELVLAEVEQPLLDMVMQYTR 71 +S V Q L V A+K Y + +D N +LY+L++ EVE PL VM+ TR Sbjct: 1 MSAVMQQVTQGNDALSHQVISAVKGYLTSVGSKDANLNLYQLIVEEVEAPLFRTVMELTR 60 Query: 72 GNQTRAALMMGINRGTLRKKLKKY 95 NQ++AA ++G++RGTLR KLK+Y Sbjct: 61 YNQSKAARVLGVSRGTLRTKLKRY 84 >UniRef50_A5IBL2 DNA-binding protein fis n=6 Tax=Legionella RepID=A5IBL2_LEGPC Length = 98 Score = 79.8 bits (196), Expect = 2e-14, Method: Composition-based stats. Identities = 35/85 (41%), Positives = 57/85 (67%) Query: 11 LTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYT 70 + + +Q ++ L+D V + + A+ + +NDLY+++L+EVE PLL VM+ Sbjct: 3 VIDTQATTQSTKQEQGLQDLVYSLVTRFLAENKSKSINDLYDMILSEVEPPLLQAVMEKR 62 Query: 71 RGNQTRAALMMGINRGTLRKKLKKY 95 RGNQ +AA M+GI+RGT+RKKL++Y Sbjct: 63 RGNQLQAAKMLGISRGTIRKKLQRY 87 >UniRef50_C3WC23 Nitrogen assimilation regulatory protein n=5 Tax=Fusobacterium RepID=C3WC23_FUSMR Length = 466 Score = 79.8 bits (196), Expect = 3e-14, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 48/98 (48%), Gaps = 4/98 (4%) Query: 1 MFEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQ 60 + + + S+VL + + L++ +K + Y + D Y ++++VE+ Sbjct: 373 ILIEDLPSNVLGTKITKKKGEGQIYDLKEWIKSEIMEY----KNNNQMDYYGNIISKVEK 428 Query: 61 PLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 L+ V++ T G + A ++GI R TLR K+ YG+ Sbjct: 429 ELIRQVLEMTNGKKVETAEILGITRNTLRTKMSNYGLE 466 >UniRef50_B8KW02 Transcriptional regulator, Fis family protein n=1 Tax=gamma proteobacterium NOR51-B RepID=B8KW02_9GAMM Length = 93 Score = 79.5 bits (195), Expect = 3e-14, Method: Composition-based stats. Identities = 38/82 (46%), Positives = 57/82 (69%) Query: 16 VNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQT 75 + + + PLRDS ++A+K Y L+G+ D++ LV+A+VE+PLL VM Y NQ Sbjct: 1 MPKKKKSLPTPLRDSAQKAIKAYLETLDGEQPTDVFALVIAQVEEPLLAEVMAYVSNNQC 60 Query: 76 RAALMMGINRGTLRKKLKKYGM 97 RAA M+G++RGTLRKKL++Y + Sbjct: 61 RAAEMLGLSRGTLRKKLRQYQL 82 >UniRef50_B7RVT1 Transcriptional regulator, Fis family protein n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RVT1_9GAMM Length = 105 Score = 79.5 bits (195), Expect = 3e-14, Method: Composition-based stats. Identities = 42/96 (43%), Positives = 66/96 (68%), Gaps = 1/96 (1%) Query: 3 EQRVNSDVLTVSTVNSQDQVTQKP-LRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQP 61 E + + + Q Q + LR++V +++ Y A+L+GQ D+Y++VLAE+E P Sbjct: 5 EPLHSPAEGDTAANDEQLQTNEASNLRNAVTASVRKYLAELDGQLSTDVYQMVLAEMEAP 64 Query: 62 LLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 LL+ +M YTR NQT+A++M+G+NRGTLRKKLK+Y + Sbjct: 65 LLEEIMAYTRNNQTKASIMLGLNRGTLRKKLKQYQL 100 >UniRef50_Q1GGX2 Two component, sigma54 specific, transcriptional regulator, Fis family n=19 Tax=Bacteria RepID=Q1GGX2_SILST Length = 459 Score = 79.5 bits (195), Expect = 3e-14, Method: Composition-based stats. Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 1/79 (1%) Query: 21 QVTQKPLRDSVKQALKNYFAQLNGQ-DVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAAL 79 + + L +SV + L+ YF LY +L EVE PL+++ + T GNQ + A Sbjct: 373 GASNEKLSESVARHLQRYFDLHGDMLPPPGLYARLLREVEAPLIEISLAATGGNQAKCAD 432 Query: 80 MMGINRGTLRKKLKKYGMN 98 ++GINR TLRKK+ + Sbjct: 433 LLGINRNTLRKKITDLDIE 451 >UniRef50_D2U436 Two-component system, NtrC family, nitrogen regulation response regulator n=2 Tax=Proteobacteria RepID=D2U436_9ENTR Length = 475 Score = 78.7 bits (193), Expect = 5e-14, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 52/97 (53%), Gaps = 8/97 (8%) Query: 2 FEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQP 61 +Q T+ + ++ PL + K AL+N + +L + VL ++E+ Sbjct: 387 LQQNQQFLYSPKKTLATNNEKWLDPLANWTKTALEN--------NKQNLLQQVLPQIERT 438 Query: 62 LLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 +L+ + YT+G++ AA ++G R TL +KLK++GM+ Sbjct: 439 MLECALTYTKGHKQEAARLLGWGRNTLTRKLKEFGMS 475 >UniRef50_Q0F179 Putative transcriptional regulator, Fis family protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F179_9PROT Length = 465 Score = 78.3 bits (192), Expect = 7e-14, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 49/91 (53%) Query: 8 SDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVM 67 +DV ++ L D+V + + Y QL +L++ +L ++E PLL + + Sbjct: 370 TDVALALGNVDNHTGEEETLADAVTRCTRQYLHQLGYASATNLHQHLLEQIEPPLLVLAL 429 Query: 68 QYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 + GNQ + + M+G+NR T+RK L KY +N Sbjct: 430 EQCNGNQLKVSEMLGLNRNTVRKLLNKYNIN 460 >UniRef50_A1AXL9 Helix-turn-helix, Fis-type n=3 Tax=Bacteria RepID=A1AXL9_RUTMC Length = 76 Score = 78.3 bits (192), Expect = 8e-14, Method: Composition-based stats. Identities = 23/76 (30%), Positives = 49/76 (64%) Query: 22 VTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMM 81 ++ L + LK YF QL+G+ + ++++++ VE ++ V+ + + NQ+ A+ ++ Sbjct: 1 MSSTDLPTCINAKLKRYFKQLDGEQASGVHKMIINNVESIVIKFVLDFVKNNQSEASRIL 60 Query: 82 GINRGTLRKKLKKYGM 97 INRGTL+KK+++Y + Sbjct: 61 SINRGTLKKKIQRYKL 76 >UniRef50_A8DVY9 Predicted protein (Fragment) n=1 Tax=Nematostella vectensis RepID=A8DVY9_NEMVE Length = 368 Score = 77.9 bits (191), Expect = 8e-14, Method: Composition-based stats. Identities = 31/76 (40%), Positives = 45/76 (59%), Gaps = 1/76 (1%) Query: 23 TQKPLRDSVKQALKNYFAQL-NGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMM 81 T L +V+ L ++F+ NG LY +L E+E PLL + TRGNQ RAA ++ Sbjct: 84 TVDNLGGAVETYLSSHFSSFPNGVPPPGLYHRILREIEVPLLTAALAATRGNQIRAADLL 143 Query: 82 GINRGTLRKKLKKYGM 97 G+NR TLRKK++ + Sbjct: 144 GLNRNTLRKKIRDLDI 159 >UniRef50_Q0FAI5 Response regulator containing CheY-like receiver n=8 Tax=Rhodobacterales RepID=Q0FAI5_9RHOB Length = 465 Score = 77.9 bits (191), Expect = 9e-14, Method: Composition-based stats. Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 4/96 (4%) Query: 3 EQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQ-DVNDLYELVLAEVEQP 61 E+ +N L S + + L SV++ +K YF LY ++ E+E P Sbjct: 364 EENLN---LIPSMNSDDLDTSNGKLSSSVERHIKRYFDLHGETLPPPGLYNRIMKEIELP 420 Query: 62 LLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 L+ + + TRGNQ + + ++GINR TLRKK+K + Sbjct: 421 LIALSLSATRGNQIKTSELLGINRNTLRKKIKDLDI 456 >UniRef50_B5YK68 Transcriptional regulator n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YK68_THEYD Length = 300 Score = 77.5 bits (190), Expect = 1e-13, Method: Composition-based stats. Identities = 30/92 (32%), Positives = 47/92 (51%) Query: 6 VNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDM 65 + S + Q +R+ ++ L N + ++LYE V+ EVE+ L + Sbjct: 208 LTRHQRLTSKDLFGEYNDQFSIRNFLELKLGNLLKEFANIGNSNLYETVIQEVEKALFIL 267 Query: 66 VMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 + T GNQ +AA ++GINR TL KKLK Y + Sbjct: 268 AINETGGNQVKAAKILGINRNTLNKKLKYYSL 299 >UniRef50_D2LEK1 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LEK1_RHOVA Length = 335 Score = 77.5 bits (190), Expect = 1e-13, Method: Composition-based stats. Identities = 30/106 (28%), Positives = 54/106 (50%), Gaps = 9/106 (8%) Query: 1 MFEQRVNSDVLTVSTVNSQDQVTQ--------KPLRDSVKQALKNYFAQLNGQ-DVNDLY 51 ++ Q + S + + +++ L + ++ L +YF Q LY Sbjct: 223 LYSQELISADIVDNELSTHSSPPPLDTPQSGTAKLNEWMEAYLTDYFGGFGDQLPPPGLY 282 Query: 52 ELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 + VL +VE PL+ + TRGNQ +AA ++G+NR TLRKK+++ + Sbjct: 283 DRVLRDVEAPLITAALTATRGNQIKAAELLGLNRNTLRKKVREQKI 328 >UniRef50_Q8ABU5 RteB, two-component system response regulator n=6 Tax=Bacteroides RepID=Q8ABU5_BACTN Length = 432 Score = 76.8 bits (188), Expect = 2e-13, Method: Composition-based stats. Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 8/95 (8%) Query: 2 FEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQP 61 + N+ V +++ L SV++A +G D ++ L A+ E+ Sbjct: 344 MREMKNTVRGAVLLTPDGERIAAGSLAFSVREA--------DGADASETLALNDAQKEKE 395 Query: 62 LLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYG 96 + ++ T GN+ AA ++GI+R TL +KL+KYG Sbjct: 396 CIMRALEETGGNRKEAARLLGISRSTLYEKLRKYG 430 >UniRef50_Q893M0 Putative sigma-54 interacting protein n=1 Tax=Clostridium tetani RepID=Q893M0_CLOTE Length = 595 Score = 76.4 bits (187), Expect = 2e-13, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 32/59 (54%) Query: 39 FAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 F + D+ E+ + +E+ ++ ++ N+T+ + +GI+R TL K+K++ + Sbjct: 536 FDESKHVTPIDIKEITIRNMEREIIIEALEKCDWNRTKTSKSLGISRRTLYNKMKEFNI 594 >UniRef50_A4J599 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J599_DESRM Length = 575 Score = 76.4 bits (187), Expect = 3e-13, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 1/71 (1%) Query: 27 LRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRG 86 L ++ ++LK Q L V + E+ L+ ++ GN++ AA M+GI R Sbjct: 505 LESAIPESLKLSSRQDQATATIGL-ASVTEQTERELIIRTLKQVNGNRSEAARMLGIPRS 563 Query: 87 TLRKKLKKYGM 97 TL K+ + G+ Sbjct: 564 TLYYKMHQLGI 574 >UniRef50_Q6SFF6 Transcriptional regulator, Fis family n=3 Tax=Bacteria RepID=Q6SFF6_9BACT Length = 475 Score = 76.4 bits (187), Expect = 3e-13, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 47/95 (49%) Query: 3 EQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPL 62 ++ N ++ S+ PL + + ++++ ++ + +L +E Sbjct: 372 QRGDNPKIVFFIRDISRRLTADHPLTERLPRSIEQITERVGRHPLKELVRESTDVIEALC 431 Query: 63 LDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 ++ ++ TR N+ AA ++G++R +L KL++YG+ Sbjct: 432 IEAALKLTRDNRASAAEILGLSRQSLYTKLRRYGI 466 >UniRef50_Q0A511 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0A511_ALHEH Length = 662 Score = 75.6 bits (185), Expect = 4e-13, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 45/94 (47%) Query: 4 QRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLL 63 +++ + + T ++ + +T + L D V A + + LA E+ L Sbjct: 563 RQLRNVLRTAVALSDGETLTVEDLPDDVLDAAETAGDDQVIEGTCTGGGDPLANAERRAL 622 Query: 64 DMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 ++ GN +R A +G++R TL +K++++G+ Sbjct: 623 QAALEQHGGNVSRTAESLGVSRNTLYRKMRRHGL 656 >UniRef50_B9XL82 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=bacterium Ellin514 RepID=B9XL82_9BACT Length = 476 Score = 75.6 bits (185), Expect = 5e-13, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 47/94 (50%) Query: 5 RVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLD 64 R + V V ++ S+ + Y ++ ++ ++ V+ EVE+ L Sbjct: 375 RYTISIEHVREVVAKVGEAVAGGNQSIAAGIGTYLSRARRGEMEGVHATVIEEVERELFG 434 Query: 65 MVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 ++ +GNQ +AA +G++R T+R+KL +G++ Sbjct: 435 QAIELAQGNQAKAARWLGVSRITMREKLNHFGLH 468 >UniRef50_B5JH96 Sigma-54 interaction domain family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JH96_9BACT Length = 515 Score = 75.2 bits (184), Expect = 6e-13, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 49/91 (53%), Gaps = 4/91 (4%) Query: 9 DVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYEL----VLAEVEQPLLD 64 + + +S+++ + PL S+ + + + + ++L E +L +E+ +++ Sbjct: 422 PQASAAETDSKEEPVEAPLATSIPEPMPISLPAIYDKLYHELRERQEMRILTLIERQMIE 481 Query: 65 MVMQYTRGNQTRAALMMGINRGTLRKKLKKY 95 + T GNQ RAA ++GI R TL+K+L +Y Sbjct: 482 RAIGETGGNQARAAEILGITRNTLKKRLDEY 512 >UniRef50_A3ZZY0 Nitrogen assimilation regulatory protein n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZZY0_9PLAN Length = 477 Score = 75.2 bits (184), Expect = 6e-13, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 44/80 (55%) Query: 19 QDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAA 78 ++ + +++ +++ + ND+Y + E+E+ L+ ++++ T GNQ AA Sbjct: 390 REHGVDRTHGEALDTNWEHFVDERISSKSNDIYSEAVIEMERHLISLILRQTGGNQAHAA 449 Query: 79 LMMGINRGTLRKKLKKYGMN 98 ++GI R +LRKK+ G+ Sbjct: 450 RLLGITRTSLRKKINYLGLE 469 >UniRef50_A9FB29 Sigma-54 dependent DNA-binding response regulator n=15 Tax=Bacteria RepID=A9FB29_SORC5 Length = 461 Score = 74.8 bits (183), Expect = 7e-13, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 48/88 (54%), Gaps = 3/88 (3%) Query: 10 VLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQY 69 + + D +T L + ++ +++ ++ D +L + EVE+ + V++ Sbjct: 367 IERAVALARYDHITVDDLPEKIRTYRRSHVL-VSSDDPTELVPM--EEVERRYILRVLEV 423 Query: 70 TRGNQTRAALMMGINRGTLRKKLKKYGM 97 GN+++AA ++G +R TL +KL++YGM Sbjct: 424 VGGNKSQAAQILGFDRATLYRKLERYGM 451 >UniRef50_C5TGC5 Transcriptional regulator, Fis family n=2 Tax=Zymomonas mobilis RepID=C5TGC5_ZYMMO Length = 104 Score = 74.8 bits (183), Expect = 8e-13, Method: Composition-based stats. Identities = 30/76 (39%), Positives = 47/76 (61%), Gaps = 2/76 (2%) Query: 22 VTQKPLRDSVKQALKNYFAQLNGQDVND-LYELVLAEVEQPLLDMVMQYTRGNQTRAALM 80 V + L D+++ L YFA D L+E +L EVE+PLL + ++ GN+ +AA + Sbjct: 23 VPEHGLADAMEAHLLYYFAVFGESLPPDGLWEHILGEVEKPLLKVALRAVGGNRIKAAKL 82 Query: 81 MGINRGTLRKK-LKKY 95 +GINR TLR+K L ++ Sbjct: 83 LGINRNTLRQKCLNRH 98 >UniRef50_Q8KZ53 Transcriptional regulator, PpsR putative n=1 Tax=uncultured proteobacterium RepID=Q8KZ53_9PROT Length = 458 Score = 74.8 bits (183), Expect = 9e-13, Method: Composition-based stats. Identities = 13/95 (13%), Positives = 47/95 (49%) Query: 3 EQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPL 62 ++ + ++ ++ + + D + ++++ ++ + +L + +E Sbjct: 352 KKNNTTRIMLFVRDITRRITPDQSVDDHLPRSIEQITERVGRVPLKELVKESTDVIEALC 411 Query: 63 LDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 ++ ++ T GN+ AA ++G++R +L KL+++ + Sbjct: 412 IEAALKLTSGNRASAAELLGLSRQSLYTKLRRFDL 446 >UniRef50_C0GH19 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GH19_9FIRM Length = 739 Score = 74.5 bits (182), Expect = 9e-13, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 46/82 (56%), Gaps = 4/82 (4%) Query: 16 VNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQT 75 + +D + L + Q +++ +G ++++ +EVE+ + ++ T+ N++ Sbjct: 661 LVEEDIINIDHLPAHLWQHIQSSRYLASGHSLDNM----TSEVERDAIINALKATKNNRS 716 Query: 76 RAALMMGINRGTLRKKLKKYGM 97 +AA ++G++R T +KLK+Y + Sbjct: 717 KAAKLLGLHRSTFYEKLKRYDL 738 >UniRef50_D2R2G6 Sigma54 specific transcriptional regulator, Fis family n=3 Tax=Planctomycetaceae RepID=D2R2G6_9PLAN Length = 354 Score = 74.5 bits (182), Expect = 1e-12, Method: Composition-based stats. Identities = 26/54 (48%), Positives = 35/54 (64%) Query: 45 QDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 D LYE V+ +VE+ L+ VMQ G QT+AA +GINR TLR KL++Y + Sbjct: 297 SDETKLYERVVNKVERELIVQVMQACGGVQTKAATKLGINRNTLRNKLQEYNLE 350 >UniRef50_C4XRA9 Transcriptional regulatory protein ZraR n=9 Tax=Proteobacteria RepID=C4XRA9_DESMR Length = 462 Score = 74.1 bits (181), Expect = 1e-12, Method: Composition-based stats. Identities = 22/51 (43%), Positives = 34/51 (66%) Query: 46 DVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYG 96 D+ L + L +VE+ ++ ++ T GN++ AA ++GI R TL KKLKKYG Sbjct: 410 DMAGLAGMALDDVEREVILATLRDTGGNKSEAARVLGITRATLHKKLKKYG 460 >UniRef50_Q2G705 Two component, sigma54 specific, transcriptional regulator, Fis family n=6 Tax=cellular organisms RepID=Q2G705_NOVAD Length = 477 Score = 73.7 bits (180), Expect = 2e-12, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 5/97 (5%) Query: 2 FEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQP 61 E + + + + D+ L +V L ++Y+ LA E+P Sbjct: 378 IEPLLAQEATGAARSSESDERRPSDLASAVAAWL-----SAQNLQPGEVYDAALAAFERP 432 Query: 62 LLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 L ++ T GNQ RAA ++GINR TLRK+L + Sbjct: 433 LFLQILALTGGNQLRAAQILGINRNTLRKRLSDLNIT 469 >UniRef50_C0GEJ3 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GEJ3_9FIRM Length = 462 Score = 73.7 bits (180), Expect = 2e-12, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 1/70 (1%) Query: 28 RDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGT 87 + VKQAL ++ + N L + + E+ + ++ GN+ +AA ++GI+R T Sbjct: 394 ENHVKQALSGINSEERKSNTNALEDQ-IHLTEKDAIINALESCNGNKAQAAKLLGIHRTT 452 Query: 88 LRKKLKKYGM 97 L +K+KK M Sbjct: 453 LYQKMKKLNM 462 >UniRef50_UPI00016C44AF cetoacetate metabolism regulatory protein atoC n=5 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C44AF Length = 490 Score = 73.7 bits (180), Expect = 2e-12, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 2/89 (2%) Query: 9 DVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQ 68 +V+T + + + P D+++ L L D+Y V V++ LL V++ Sbjct: 378 EVITPDCLPASLRGAAAPPGDALE--LTALITSLLRVGATDIYRQVTHTVDRALLTAVLE 435 Query: 69 YTRGNQTRAALMMGINRGTLRKKLKKYGM 97 + GNQ +AA +GI+R TLR KL+ G+ Sbjct: 436 HVHGNQKQAADRLGISRTTLRAKLQTLGL 464 >UniRef50_A5CY60 Transcriptional activator of acetoin/glycerol metabolism n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5CY60_PELTS Length = 692 Score = 73.7 bits (180), Expect = 2e-12, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 32/53 (60%) Query: 45 QDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 + ++ L +E+ ++ ++ T GN TRAA +G+ R TL +K+KKYG+ Sbjct: 636 EVPPPQFDDNLESLEKRAVEEALKQTGGNITRAAGRLGVTRKTLYRKIKKYGI 688 >UniRef50_C3WJS3 Nitrogen assimilation regulatory protein n=9 Tax=Fusobacterium RepID=C3WJS3_9FUSO Length = 464 Score = 73.7 bits (180), Expect = 2e-12, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 49/98 (50%), Gaps = 3/98 (3%) Query: 1 MFEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQ 60 + + + +V+ + S++++ + + +K + + +D Y +++++E+ Sbjct: 370 ILIEDLPPNVIGEKAITSKEEIRALSIENLIKNEISQL---KSKNKKSDYYFEIISKIEK 426 Query: 61 PLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 L+ +++ T G + A ++GI R TLR K+ Y + Sbjct: 427 ELIKQILEITNGKKVETAEILGITRNTLRTKMNYYDLE 464 >UniRef50_D0LIH3 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LIH3_HALO1 Length = 466 Score = 73.3 bits (179), Expect = 2e-12, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 2/85 (2%) Query: 14 STVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGN 73 +T+ +D + + ++ G +DL L L E+E+ + V++ G Sbjct: 384 NTLGIEDFQPRAGVAGLAAESAPGRRTGGRGDSADDL--LSLDELERLHILRVLEACGGQ 441 Query: 74 QTRAALMMGINRGTLRKKLKKYGMN 98 +T+A+ ++GINR TL KKL++YG+ Sbjct: 442 KTKASAVLGINRTTLWKKLRQYGLE 466 >UniRef50_P28787 Nitrogen regulation protein NR(I) n=29 Tax=Gammaproteobacteria RepID=NTRC_PROVU Length = 473 Score = 73.3 bits (179), Expect = 2e-12, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 46/98 (46%), Gaps = 3/98 (3%) Query: 1 MFEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQ 60 + Q + S++ + + + + Q L + + G+ ++ L + E+ Sbjct: 377 IMPQDLPSEIRLA---DEKAKNINRLTSQHWSQHLSLWADEALGEGKENILNDALPQFER 433 Query: 61 PLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 LL + YT+G++ AA ++G R TL +KLK+ G+ Sbjct: 434 TLLLSALAYTQGHKQDAARLLGWGRNTLTRKLKELGIE 471 >UniRef50_C9PYW1 Sigma-54-dependent transcriptional regulator n=5 Tax=Prevotella RepID=C9PYW1_9BACT Length = 420 Score = 73.3 bits (179), Expect = 2e-12, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 48/93 (51%) Query: 6 VNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDM 65 +S + ++T N T ++ + + N F + + D L L ++ + +++ Sbjct: 325 YSSSIAALNTKNYDTPPTLASIQPVQQAPISNGFVEAEEINEADNESLNLNDLGRQMVEK 384 Query: 66 VMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 ++ GN+ +AA+ +GI+ TL +++K+YG+ Sbjct: 385 ALERNAGNRKKAAIELGISDRTLYRRIKQYGLE 417 >UniRef50_A0LND9 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Deltaproteobacteria RepID=A0LND9_SYNFM Length = 483 Score = 72.9 bits (178), Expect = 3e-12, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 39/79 (49%) Query: 18 SQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRA 77 K V++ L+ L ++E ++ VE+ LL V++ NQ +A Sbjct: 399 PSSPEWDKNPWARVERKLEELIPDLLQVGGEAMHESIIDMVERILLSKVLEQCGNNQVKA 458 Query: 78 ALMMGINRGTLRKKLKKYG 96 A ++G++R TLR ++KK+ Sbjct: 459 ARVLGVSRNTLRHRMKKFD 477 >UniRef50_C8W252 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W252_DESAS Length = 591 Score = 72.9 bits (178), Expect = 3e-12, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 33/61 (54%) Query: 37 NYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYG 96 F + +N +L +VE+ + + T GN+ +AA ++GI+R L KK+ +YG Sbjct: 529 QKFGKSKRHSINKSLPSLLEQVEKEAIADALSVTNGNKMQAAKILGISRAWLYKKIAQYG 588 Query: 97 M 97 + Sbjct: 589 I 589 >UniRef50_Q7USH9 Nitrogen assimilation regulatory protein n=1 Tax=Rhodopirellula baltica RepID=Q7USH9_RHOBA Length = 514 Score = 72.9 bits (178), Expect = 3e-12, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 1/87 (1%) Query: 12 TVSTVNSQDQVTQKPLRDSVK-QALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYT 70 T ++ + T + L L +L + ++Y + +E+ ++ V+Q T Sbjct: 418 TRNSGAKSESGTNEKLESEAPGSQLPQLVQRLLKEKSTNVYGEAMEYMERFVILQVLQST 477 Query: 71 RGNQTRAALMMGINRGTLRKKLKKYGM 97 GNQ++AA ++GI RG LR ++ Y + Sbjct: 478 DGNQSQAAEILGITRGKLRDRINSYNI 504 >UniRef50_A4J593 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J593_DESRM Length = 582 Score = 72.9 bits (178), Expect = 3e-12, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 46/94 (48%), Gaps = 2/94 (2%) Query: 4 QRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLL 63 + + + V + + D + + L +++++ Y + + V E E+ L+ Sbjct: 487 RELKNAVERLVVLTDGDIIDEAALPENLRR--NTYISLVTSPVSQGKLMNVAVEAEKQLI 544 Query: 64 DMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 +Q RGN++ AA ++GI R TL KL++ G+ Sbjct: 545 LKTLQQVRGNRSEAARVLGIPRSTLYYKLRQLGI 578 >UniRef50_B6B3N6 Transcriptional regulator PpsR n=2 Tax=Rhodobacterales RepID=B6B3N6_9RHOB Length = 470 Score = 72.9 bits (178), Expect = 3e-12, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 41/77 (53%) Query: 21 QVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALM 80 + + P++ + +++ + G + D+ +E+ ++ ++ T N+ AA M Sbjct: 390 ETVRTPMQQITEVDMRSVIELIGGHSLKDIVAKSTDVIEKMCIETAVEMTSNNRVAAAEM 449 Query: 81 MGINRGTLRKKLKKYGM 97 +G++R +L KL+KYG+ Sbjct: 450 LGLSRQSLYVKLRKYGL 466 >UniRef50_D2R3W1 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Planctomycetaceae RepID=D2R3W1_9PLAN Length = 611 Score = 72.5 bits (177), Expect = 3e-12, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 34/64 (53%) Query: 35 LKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKK 94 L + + + +L L + E+ L+ ++ T GN AA ++G+ R TL +K+++ Sbjct: 546 LPDDLGLRDVGNAAELESLRMDYWERRLIQEALKRTSGNVPEAAKLLGLGRATLYRKIEE 605 Query: 95 YGMN 98 YG+ Sbjct: 606 YGIE 609 >UniRef50_A4J6T1 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Bacteria RepID=A4J6T1_DESRM Length = 512 Score = 72.5 bits (177), Expect = 4e-12, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 40/85 (47%) Query: 14 STVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGN 73 ++ DQ L V + + + + ++ L + E+E ++ +++ GN Sbjct: 425 EDLDQLDQQALLDLYHKVDGLYRAIHRTMGKKGITTVFPLTIQELEARAIEETLEFFNGN 484 Query: 74 QTRAALMMGINRGTLRKKLKKYGMN 98 + +A +GI R TL +K K+Y +N Sbjct: 485 VSMSARALGIGRNTLYRKAKEYNIN 509 >UniRef50_B9R473 Transcriptional regulator PpsR n=1 Tax=Labrenzia alexandrii DFL-11 RepID=B9R473_9RHOB Length = 478 Score = 72.5 bits (177), Expect = 4e-12, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 47/96 (48%), Gaps = 2/96 (2%) Query: 3 EQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPL 62 ++ + +L + S ++T P + + + + + + + +L L VE+ Sbjct: 379 KETDTTQLLVILQAASAGKMTLPPPATADQA--EGFASLVGKVPLKELIRESLDVVERIC 436 Query: 63 LDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 ++ + T N+ AA ++G++R +L KL+++G+ Sbjct: 437 IEAALDQTNNNRASAAEILGLSRQSLYIKLRRHGLE 472 >UniRef50_A5GBB3 Two component, sigma-54 specific, transcriptional regulator, Fis family n=6 Tax=Desulfuromonadales RepID=A5GBB3_GEOUR Length = 500 Score = 72.5 bits (177), Expect = 4e-12, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 2/93 (2%) Query: 6 VNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDM 65 + L + K L + ++ FA+ + + L E+E+ L+ M Sbjct: 381 LTPVFLNAEIKQQYETAQNKSLHVDSHASAQHSFARGHITIPTG--GISLEELERQLIRM 438 Query: 66 VMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 ++ + GNQT+AA + ++R TLR ++KK+GM+ Sbjct: 439 GLEISGGNQTKAAKYLKMSRDTLRYRMKKFGMS 471 >UniRef50_A7HD97 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Deltaproteobacteria RepID=A7HD97_ANADF Length = 452 Score = 72.5 bits (177), Expect = 4e-12, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 32/58 (55%) Query: 40 AQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 ++ D + + + E+ + V++ G + AA ++GI++ TL +KLK+YG+ Sbjct: 392 SRAERADAPQPEPVAIDDAEREHIRRVLERCGGRRGEAARLLGIDKSTLWRKLKRYGL 449 >UniRef50_A6TWZ7 Sigma54 specific transcriptional regulator, Fis family n=24 Tax=Clostridiaceae RepID=A6TWZ7_ALKMQ Length = 645 Score = 72.1 bits (176), Expect = 4e-12, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 28/49 (57%) Query: 50 LYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 L L ++E+ + V+ GN ++AA +GI R TL +K+ KY ++ Sbjct: 578 LESEPLEDMEKRHIHQVLTKYEGNVSQAAEALGIGRNTLYRKMAKYKID 626 >UniRef50_A6UCY3 Two component, sigma54 specific, transcriptional regulator, Fis family n=46 Tax=Alphaproteobacteria RepID=A6UCY3_SINMW Length = 549 Score = 72.1 bits (176), Expect = 4e-12, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 35/94 (37%) Query: 5 RVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLD 64 + T + L + LAEVE+ L+ Sbjct: 447 DGGPEGRTAPDRPAAVTADAGALETAPTDQRDERIENAIASLSEGGEVRKLAEVEEELIR 506 Query: 65 MVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 +++ RG ++ A +GI R TL +KLK YG++ Sbjct: 507 FALKFYRGQMSQVARKLGIGRSTLYRKLKDYGID 540 >UniRef50_Q6MRN6 Site-specific DNA inversion stimulation factor n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MRN6_BDEBA Length = 99 Score = 72.1 bits (176), Expect = 4e-12, Method: Composition-based stats. Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 2/74 (2%) Query: 26 PLRDSVKQALKNYFAQLNGQ--DVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGI 83 L VK L+ FAQ ++N LY +VL +VE+PLL++ ++ GNQ + A M+GI Sbjct: 20 SLEKLVKSKLEVLFAQQKEAQVELNGLYNVVLEQVEKPLLELALRAYNGNQVKTAQMLGI 79 Query: 84 NRGTLRKKLKKYGM 97 NR TL+KK+ Y + Sbjct: 80 NRNTLKKKIDNYKI 93 >UniRef50_Q3B305 Two component transcriptional regulator, Fis family n=9 Tax=Chlorobiaceae RepID=Q3B305_PELLD Length = 492 Score = 72.1 bits (176), Expect = 5e-12, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 33/69 (47%) Query: 30 SVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLR 89 AL AQ + D+ L E E+ + + + GN T+ A M+GI R TL Sbjct: 419 HPASALAGSAAQRSAGHGPDMQSYSLEEHEREAILKAYKASNGNLTKTARMLGIGRATLY 478 Query: 90 KKLKKYGMN 98 +KL K+G+ Sbjct: 479 RKLDKFGLE 487 >UniRef50_Q1CWG7 Sigma-54 dependent DNA-binding response regulator n=6 Tax=Bacteria RepID=Q1CWG7_MYXXD Length = 477 Score = 72.1 bits (176), Expect = 5e-12, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 41/88 (46%), Gaps = 11/88 (12%) Query: 21 QVTQKPLRDSVKQAL-----------KNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQY 69 + L +V++A+ + + + L E+ L EVE+ L++ + Sbjct: 386 PGNVRELEHAVERAMLMASGDEVTQEDLLLKRAGREGMARLEEMTLEEVERYLIERALAR 445 Query: 70 TRGNQTRAALMMGINRGTLRKKLKKYGM 97 GN + AA +G++R L ++L+ YG+ Sbjct: 446 HEGNVSEAAKGLGLSRSALYRRLQYYGI 473 >UniRef50_Q16DR6 Transcriptional regulator PpsR n=2 Tax=Roseobacter RepID=Q16DR6_ROSDO Length = 475 Score = 72.1 bits (176), Expect = 5e-12, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 1/89 (1%) Query: 10 VLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDV-NDLYELVLAEVEQPLLDMVMQ 68 + VS + + + ++ L G D+ VE+ ++ ++ Sbjct: 382 IRDVSRTETARGGSGGTISNAAPAEPARNVMDLVGSAALKDIVAETTDVVEKMCIETAVE 441 Query: 69 YTRGNQTRAALMMGINRGTLRKKLKKYGM 97 T N+ AA M+G++R +L KL+KYG+ Sbjct: 442 LTNNNRVAAAEMLGLSRQSLYVKLRKYGL 470 >UniRef50_UPI00016C4268 cetoacetate metabolism regulatory protein atoC n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C4268 Length = 475 Score = 72.1 bits (176), Expect = 5e-12, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 4/90 (4%) Query: 8 SDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVM 67 L S ++ P R + Q ++ + +L E E+++ LL MVM Sbjct: 380 PSALADMAGPSAAPASEPPARADLHQFVRRRLSD----GSENLLEEARLELDRFLLPMVM 435 Query: 68 QYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 + TRGNQ RAA ++G+ R TLR++L + G+ Sbjct: 436 ELTRGNQVRAARVLGVARLTLRRRLHELGI 465 >UniRef50_A5EVU6 Two-component response regulator PilR n=2 Tax=Cardiobacteriaceae RepID=A5EVU6_DICNV Length = 528 Score = 72.1 bits (176), Expect = 6e-12, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 3/90 (3%) Query: 9 DVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQ 68 D T T Q ++ S ++ K + Q++ D E + E+E+ LL ++ Sbjct: 442 DEQTKQTTAPSSQTPPPTIQKSSERVHK---SDEKAQEMPDDLEGFMQEMERKLLIKALK 498 Query: 69 YTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 N+T+AA +GI+ +R KLKK G++ Sbjct: 499 ENGNNKTKAAESLGISFRAMRYKLKKLGID 528 >UniRef50_D2LGI6 Transcriptional regulator PpsR, Fis family n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LGI6_RHOVA Length = 481 Score = 72.1 bits (176), Expect = 6e-12, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 41/85 (48%) Query: 13 VSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRG 72 + + ++ + ++ +++ + + DL +E+ ++ ++ T Sbjct: 387 IRSSATRAAQQKAARPANLARSVDQLTELVGRVSLKDLVRESSDLIEKLCIEAALELTGD 446 Query: 73 NQTRAALMMGINRGTLRKKLKKYGM 97 N+ AA M+G++R +L KL++YG+ Sbjct: 447 NRASAAEMLGLSRQSLYVKLRRYGL 471 >UniRef50_Q1PYM7 Similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYM7_9BACT Length = 469 Score = 71.8 bits (175), Expect = 6e-12, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 32/52 (61%) Query: 46 DVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 + L LA +E+ ++ V++ T +T AA ++GINR TL K+K+YG+ Sbjct: 416 SSDGLDARSLAFMEKQHIENVLKETSWRRTEAARVLGINRTTLYNKIKEYGI 467 >UniRef50_C6MTS9 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Geobacter sp. M18 RepID=C6MTS9_9DELT Length = 465 Score = 71.8 bits (175), Expect = 6e-12, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 47/95 (49%), Gaps = 5/95 (5%) Query: 4 QRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLL 63 + + + + + + Q+T + L S + L +L L VE+ + Sbjct: 366 RELRNTIRRACILATDQQITSELLPFSPPRVLPP-----RQVSPAAPTQLPLWVVERDHI 420 Query: 64 DMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 + V++ GN++RAA ++ I+R TL KL++YG++ Sbjct: 421 ERVLEQVEGNKSRAAKILEIDRKTLYTKLERYGLD 455 >UniRef50_Q2LQP1 Transcrption factor sigma 54 type n=4 Tax=Deltaproteobacteria RepID=Q2LQP1_SYNAS Length = 555 Score = 71.8 bits (175), Expect = 6e-12, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 34/66 (51%) Query: 33 QALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKL 92 L F + ++ E LA E+ ++ +Q + GN+ AA M+GI+R L KK+ Sbjct: 482 HNLPQAFHKERKVTMSGTLEEQLARAERNAIETALQTSNGNRALAARMLGIHRTALYKKM 541 Query: 93 KKYGMN 98 + G++ Sbjct: 542 NRLGVD 547 >UniRef50_C9RBQ4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Ammonifex degensii KC4 RepID=C9RBQ4_AMMDK Length = 470 Score = 71.8 bits (175), Expect = 7e-12, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 43/78 (55%), Gaps = 2/78 (2%) Query: 22 VTQKPLRDSVKQALKNYFAQLNGQDVNDLY--ELVLAEVEQPLLDMVMQYTRGNQTRAAL 79 +T + L + + +A++ + + + + ++AE+E+ + ++ RGN+T A Sbjct: 375 ITPESLPEYLLRAVRGRTEAWHPAEDRGVLPLKEMVAEMERSAILRALEEYRGNKTAVAR 434 Query: 80 MMGINRGTLRKKLKKYGM 97 +G++R TL K+K+ G+ Sbjct: 435 ALGMSRTTLYAKMKELGI 452 >UniRef50_Q7UJV2 Nitrogen regulation protein NR(I) n=1 Tax=Rhodopirellula baltica RepID=Q7UJV2_RHOBA Length = 470 Score = 71.8 bits (175), Expect = 7e-12, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 6/83 (7%) Query: 16 VNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQT 75 S +K +R + A++ D L+ LA E LL VM++T GN+ Sbjct: 392 TTSPVLAMEKSIRVWSENAIEA------NPDSVTLHSDYLAATEPTLLRTVMKHTGGNRA 445 Query: 76 RAALMMGINRGTLRKKLKKYGMN 98 +AA M+GI+RGTLR ++K YG++ Sbjct: 446 KAAEMLGIHRGTLRDRMKAYGID 468 >UniRef50_B4UAL8 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Anaeromyxobacter RepID=B4UAL8_ANASK Length = 461 Score = 71.8 bits (175), Expect = 7e-12, Method: Composition-based stats. Identities = 22/45 (48%), Positives = 34/45 (75%) Query: 53 LVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 LVL +VE+ L+ M+ GNQ++AA ++G++R TLR +LKK+GM Sbjct: 416 LVLDDVERKLIAEAMERASGNQSKAARLLGVSRDTLRYRLKKHGM 460 >UniRef50_D2R311 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R311_9PLAN Length = 511 Score = 71.4 bits (174), Expect = 8e-12, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 44/81 (54%) Query: 17 NSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTR 76 + ++ +++ A + NDLY +AE+E+ ++ +V++ T+GN Sbjct: 401 PTLVHAPTHATSEATTTHWRSFVADHVFHEKNDLYADAIAEMERQVIALVLEETKGNIAH 460 Query: 77 AALMMGINRGTLRKKLKKYGM 97 AA ++GI RG+LRKK + + + Sbjct: 461 AARLLGITRGSLRKKARTHDL 481 >UniRef50_Q0AVD1 Putative uncharacterized protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AVD1_SYNWW Length = 554 Score = 71.4 bits (174), Expect = 8e-12, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 41/78 (52%), Gaps = 3/78 (3%) Query: 20 DQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAAL 79 + +T + D++ Q +Y + + +L + E+ L++ V++ GN+++AA Sbjct: 478 NTITINDIPDNIIQRKNHYSSTTGSHSS---LDNILGKQEKALIEEVLKNCGGNKSKAAK 534 Query: 80 MMGINRGTLRKKLKKYGM 97 + I+R L +KL KY + Sbjct: 535 TLNIHRSVLYRKLHKYDI 552 >UniRef50_A4IPF8 Transcriptional regulator n=6 Tax=Bacillales RepID=A4IPF8_GEOTN Length = 571 Score = 71.4 bits (174), Expect = 8e-12, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 9/74 (12%) Query: 32 KQALKNYFAQL---------NGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMG 82 ++ L Y + + G ++ D ++ ++ + E+ + + GN+ AA +G Sbjct: 497 REHLPAYLSTIHPSVTPMPDGGANIADQWKEIVYQSERERIAAALVAANGNKAEAARRLG 556 Query: 83 INRGTLRKKLKKYG 96 I+R TL +KLKKYG Sbjct: 557 IHRSTLYEKLKKYG 570 >UniRef50_A5D511 Transcriptional regulator n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D511_PELTS Length = 478 Score = 71.4 bits (174), Expect = 9e-12, Method: Composition-based stats. Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 2/66 (3%) Query: 34 ALKNYFAQLNGQDVNDLY--ELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKK 91 L+ D N+ Y V+ E+ LL+ V++ T GN+ +AA M+GI+R TL K Sbjct: 408 ELRRISLSNINSDGNNKYICSDVINSKEKELLEEVLRNTGGNKRKAAEMLGIHRTTLYYK 467 Query: 92 LKKYGM 97 L+KY M Sbjct: 468 LRKYNM 473 >UniRef50_A0Q2I8 Aco operon expression regulatory protein n=24 Tax=Clostridia RepID=A0Q2I8_CLONN Length = 659 Score = 71.4 bits (174), Expect = 9e-12, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 25/45 (55%) Query: 54 VLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 + VE + ++ GN+ +A ++ I R TL +K+KKY +N Sbjct: 613 SMDMVESEAIKNALKECNGNKVKACRLLNIGRSTLYRKIKKYNIN 657 >UniRef50_C1ZHW1 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZHW1_PLALI Length = 350 Score = 71.4 bits (174), Expect = 9e-12, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 35/55 (63%) Query: 44 GQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 G+D + Y+ V+ VE+ L+ V++ +G QT+AA +GINR TL KK+ Y + Sbjct: 292 GEDCTNAYDRVVTLVEKELILQVLRTCQGVQTKAATKLGINRNTLHKKITDYHLE 346 >UniRef50_Q0C0N3 Nitrogen regulation protein NR(I) n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0C0N3_HYPNA Length = 457 Score = 71.4 bits (174), Expect = 9e-12, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 41/74 (55%) Query: 24 QKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGI 83 + + + + + + ++++E V+ VE+PL+ + + T GN+ RAA ++G+ Sbjct: 381 EAEIEGLLHRYVMGDLVSGGEGEGSNVHESVVNRVERPLIRLALSVTSGNKVRAAQLLGM 440 Query: 84 NRGTLRKKLKKYGM 97 NR TLR K+ G+ Sbjct: 441 NRNTLRAKINALGI 454 >UniRef50_B0TAU8 Sigma-54 dependent transcriptional regulator n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TAU8_HELMI Length = 573 Score = 71.0 bits (173), Expect = 1e-11, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 33/69 (47%) Query: 30 SVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLR 89 + L+ + + + +L E E+ + +Q GN+ +AA ++GI+R L Sbjct: 504 HLPMHLQKFNHTDATAPQSQSLQALLEETEKTAILQALQSANGNKVQAAQLLGISRAGLY 563 Query: 90 KKLKKYGMN 98 +KL KY + Sbjct: 564 QKLAKYQIE 572 >UniRef50_D2MHT4 Two component, sigma54 specific, transcriptional regulator, Fis family (Fragment) n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MHT4_9BACT Length = 139 Score = 71.0 bits (173), Expect = 1e-11, Method: Composition-based stats. Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 6/86 (6%) Query: 12 TVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTR 71 +S + D L+ V+Q +++ + +LY + E+PL +V+ +T Sbjct: 59 PISEPGNLDAKIHALLQVHVEQCMES------DAPLGELYTEIRETFEKPLFKIVLAHTN 112 Query: 72 GNQTRAALMMGINRGTLRKKLKKYGM 97 GN+++AA ++GINR TL KL +Y + Sbjct: 113 GNRSKAAEILGINRNTLHTKLVEYKL 138 >UniRef50_C6BWX2 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BWX2_DESAD Length = 447 Score = 71.0 bits (173), Expect = 1e-11, Method: Composition-based stats. Identities = 19/46 (41%), Positives = 32/46 (69%) Query: 53 LVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 L EVE+ ++ VM T GN+T+AA ++GI+R +L +K+K+ G+ Sbjct: 399 RTLEEVERDHIEKVMLATNGNKTQAAKILGIDRVSLWRKMKRLGLE 444 >UniRef50_C8WT15 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WT15_ALIAD Length = 444 Score = 71.0 bits (173), Expect = 1e-11, Method: Composition-based stats. Identities = 21/111 (18%), Positives = 45/111 (40%), Gaps = 19/111 (17%) Query: 6 VNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLA--------- 56 + V + Q + + V+ A + + G+ + + Sbjct: 323 IPPRVSEEAAGLIQAYAWPGNIEEIVQAA-RRTLSMAEGEVRPEHLPEAVRALHLKPARR 381 Query: 57 ---------EVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 E+E+ + ++ + GN++RAA ++GI+R L KLK++GM+ Sbjct: 382 RVPLADQSKELERARIREALEESGGNKSRAAQLLGISRAALYYKLKQHGMD 432 >UniRef50_Q3ABV5 Sigma-54 dependent transcriptional regulator n=3 Tax=Bacteria RepID=Q3ABV5_CARHZ Length = 732 Score = 71.0 bits (173), Expect = 1e-11, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 35/71 (49%) Query: 28 RDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGT 87 + + L + ++ +AEVE+ L+ ++ T N+ A ++GI R T Sbjct: 661 PEHLPAQLTSKALSGERITKITTFKEAVAEVEKKLIIEGLKATNYNKLACAKLLGIPRAT 720 Query: 88 LRKKLKKYGMN 98 L +K+K+YG+ Sbjct: 721 LYQKIKEYGIE 731 >UniRef50_B8DM67 Sigma54 specific transcriptional regulator with PAS/PAC sensor, Fis family n=1 Tax=Desulfovibrio vulgaris str. 'Miyazaki F' RepID=B8DM67_DESVM Length = 567 Score = 71.0 bits (173), Expect = 1e-11, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 31/58 (53%) Query: 40 AQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 AQ L ++++E+ L+ +Q T + AA ++G R TL +K+K+YGM Sbjct: 509 AQAAADMAEPLARASVSDLERRLIADALQRTGNRRGEAAELLGWGRSTLWRKMKQYGM 566 >UniRef50_Q8ES30 Transcriptional regulator n=1 Tax=Oceanobacillus iheyensis RepID=Q8ES30_OCEIH Length = 573 Score = 71.0 bits (173), Expect = 1e-11, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 2/83 (2%) Query: 16 VNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQT 75 ++ +T L D + K + N + E + E E+ + +++ +GN+T Sbjct: 493 LSESQHMTLDNLPDDIDD--KQRLSSYNFLANKKVAESLSEEEERDRIKETLEHVKGNKT 550 Query: 76 RAALMMGINRGTLRKKLKKYGMN 98 +AA ++GI+R TL KL +Y + Sbjct: 551 KAAKLLGISRATLYNKLSRYTLE 573 >UniRef50_C5AV92 Transcriptional regulator PpsR-CrtJ; Fis family n=6 Tax=Methylobacterium RepID=C5AV92_METEA Length = 486 Score = 71.0 bits (173), Expect = 1e-11, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 38/86 (44%) Query: 12 TVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTR 71 TV + + ++++ + + L +E+ ++ ++ TR Sbjct: 389 TVRATPRRAAPVHAGGGHDLPRSVEQMTELVGRVSMKALVRETTDLIEKLCIEAALRITR 448 Query: 72 GNQTRAALMMGINRGTLRKKLKKYGM 97 N+ AA M+G++R L K+++YG+ Sbjct: 449 DNRASAAEMLGLSRQGLYAKMRRYGI 474 >UniRef50_Q28W31 Transcriptional regulator PpsR n=10 Tax=Rhodobacteraceae RepID=Q28W31_JANSC Length = 482 Score = 70.6 bits (172), Expect = 1e-11, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 40/88 (45%) Query: 10 VLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQY 69 V +S + + A++N + + D+ VE+ ++ ++ Sbjct: 383 VRDISRIEVVREPASATPSAMSDDAMRNVMDLVGSAPLKDIVSATTDVVEKMCIETAVEL 442 Query: 70 TRGNQTRAALMMGINRGTLRKKLKKYGM 97 T N+ AA M+G++R +L KL+KYG+ Sbjct: 443 TDNNRVAAAEMLGLSRQSLYVKLRKYGL 470 >UniRef50_A3ZS60 Nitrogen assimilation regulatory protein n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZS60_9PLAN Length = 479 Score = 70.6 bits (172), Expect = 1e-11, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 38/65 (58%) Query: 34 ALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLK 93 A + QL + D+Y L +E LL V+ T GNQ++AA+++GI RG+LR K++ Sbjct: 406 AFDVFLGQLESRGSEDMYAESLEWMEHRLLSFVLDKTAGNQSKAAVLLGITRGSLRHKMR 465 Query: 94 KYGMN 98 G+ Sbjct: 466 ALGIT 470 >UniRef50_A5WGF4 Nitrogen metabolism transcriptional regulator, NtrC, Fis Family n=3 Tax=Psychrobacter RepID=A5WGF4_PSYWF Length = 602 Score = 70.6 bits (172), Expect = 1e-11, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 42/96 (43%), Gaps = 8/96 (8%) Query: 3 EQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPL 62 + S +T + + Q L++ AL+ ++ + E+ L Sbjct: 512 QTSTASVTITPPALVNSAHSWQDQLQNWAHTALQQ--------GQTEILQQATPTFEKIL 563 Query: 63 LDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 + + ++Y++G + AA ++G R TL +K+K G+ Sbjct: 564 IRVALEYSKGRKGEAADLLGWGRNTLTRKIKLLGLE 599 >UniRef50_A6CEU3 Acetoacetate metabolism regulatory protein atoC n=2 Tax=Planctomycetaceae RepID=A6CEU3_9PLAN Length = 346 Score = 70.6 bits (172), Expect = 1e-11, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 5/86 (5%) Query: 13 VSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRG 72 ++ S+ Q + RD V L+ G+ D++ +++ VE+ ++ V++ +G Sbjct: 262 ARSLPSKAQDPETMCRDLVNMELQRV-----GESSTDVHTQIVSLVEKEVILQVLRSCQG 316 Query: 73 NQTRAALMMGINRGTLRKKLKKYGMN 98 QT+ A +GINR TL KK+ +Y + Sbjct: 317 VQTKTATRLGINRNTLHKKISEYELE 342 >UniRef50_Q93KC9 AorR protein n=1 Tax=Eubacterium acidaminophilum RepID=Q93KC9_EUBAC Length = 518 Score = 70.6 bits (172), Expect = 2e-11, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 37/93 (39%), Gaps = 3/93 (3%) Query: 6 VNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDM 65 +V V + + V+ ++N + Y+ L +E+ + Sbjct: 427 NIREVQNVVELVLNTGRLPDEIA-CVQPCMRNDEYSAKKSEEEKHYD--LHALEKEHITR 483 Query: 66 VMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 ++ N ++ A +GI R TL KK++ + +N Sbjct: 484 ALEECGYNISKTARKLGIARNTLYKKIRDFSIN 516 >UniRef50_D0MKJ7 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MKJ7_RHOM4 Length = 990 Score = 70.2 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 6/93 (6%) Query: 6 VNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDM 65 V S+ + + Q+ LRD + ++ D N + VLA+ E+ L++ Sbjct: 887 VASEPVPTIDLKDLSPAVQRALRDEPARPVRTAL------DSNQPLDAVLADTEKALIEQ 940 Query: 66 VMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 V+ RG + AA +G+ R L KK+K+ G++ Sbjct: 941 VLAENRGRISAAARALGLTRQGLYKKMKRLGID 973 >UniRef50_B9JZ35 Transcriptional regulator n=2 Tax=Alphaproteobacteria RepID=B9JZ35_AGRVS Length = 318 Score = 70.2 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 45/78 (57%), Gaps = 7/78 (8%) Query: 21 QVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALM 80 Q+ + + + A + + G++ +DL+ E E+ L V+ T+GN ++AA + Sbjct: 248 QIDDQAIAAGLPAA--DALKEKRGEEGDDLH-----EAERAALRRVLSRTKGNVSQAAQL 300 Query: 81 MGINRGTLRKKLKKYGMN 98 +GI+R TL +K+K++ ++ Sbjct: 301 LGISRATLHRKMKRFNIH 318 >UniRef50_A4A0N6 Two-component system, regulatory protein n=1 Tax=Blastopirellula marina DSM 3645 RepID=A4A0N6_9PLAN Length = 177 Score = 70.2 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 40/88 (45%) Query: 8 SDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVM 67 S+ + + + + VT+ D + A A+ + LAE E + V+ Sbjct: 88 SNAVEAIRLGAVNYVTKPADADEILAAFDEKAAEDLTASPIEYQPQSLAEAEWGHIHRVL 147 Query: 68 QYTRGNQTRAALMMGINRGTLRKKLKKY 95 GN + AA ++GI R TL++KLKK Sbjct: 148 DDCGGNLSEAARLLGIPRRTLQRKLKKL 175 >UniRef50_C6HWP3 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HWP3_9BACT Length = 375 Score = 70.2 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 48/94 (51%), Gaps = 2/94 (2%) Query: 7 NSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELV--LAEVEQPLLD 64 +SD L + +S D L + L + D + L + ++E+ L+ Sbjct: 282 SSDPLPPQSDSSPDAELPVLLDGASASLLPDPARLAGSIDAESDFSLTAFMGDIERTLVQ 341 Query: 65 MVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 ++ GN+++AA ++GINR TL +KLK++G++ Sbjct: 342 KALERAGGNRSKAAELLGINRTTLIEKLKRFGIS 375 >UniRef50_A7GG75 Sensory box sigma-54 dependent transcriptional regulator n=10 Tax=Clostridium RepID=A7GG75_CLOBL Length = 584 Score = 70.2 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 49/94 (52%), Gaps = 3/94 (3%) Query: 4 QRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLL 63 +++ + V + +++ +VT + + + Q ++ + DL V+ E+ ++ Sbjct: 493 RQLKNVVERMVVLSTNGEVTISSVPNHIVQDVEEI--EGESHHRYDL-NEVVKNTEKKII 549 Query: 64 DMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 VM+ T+GN+ +AA ++ I R TL KL +Y + Sbjct: 550 KEVMEITKGNKKKAAEILNIKRSTLYYKLNQYDL 583 >UniRef50_B8FV05 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfitobacterium hafniense DCB-2 RepID=B8FV05_DESHD Length = 687 Score = 70.2 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 33/50 (66%) Query: 49 DLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 + +L LAE+E+ ++ + T + + A+ ++GI R T+ +KLK+YG++ Sbjct: 636 NTRKLTLAEIEKEVIFEALSQTGNDASEASRILGIGRTTIYRKLKEYGID 685 >UniRef50_B5JI58 Sigma-54 interaction domain family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JI58_9BACT Length = 473 Score = 69.8 bits (170), Expect = 2e-11, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 43/86 (50%) Query: 13 VSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRG 72 V + ++++Q +S+ Q + + D Y+ ++ V++ L+ + + G Sbjct: 385 VEQLLRNEEISQPKNSESLSQIVSKFLDTSEKDQKGDAYDSIIEAVDKELISQALARSEG 444 Query: 73 NQTRAALMMGINRGTLRKKLKKYGMN 98 N +A+ +G++R TLRKK+ K + Sbjct: 445 NLAQASRWLGLSRLTLRKKISKLELT 470 >UniRef50_D2R4P1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R4P1_9PLAN Length = 469 Score = 69.8 bits (170), Expect = 2e-11, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 7/91 (7%) Query: 7 NSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMV 66 +T + +DQ+T + LR+ +K + +LYE +L VE PLL+ V Sbjct: 380 VPRTSPANTGDERDQITTR-LREWALARVKE------AGETGELYEELLKLVEPPLLEAV 432 Query: 67 MQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 ++ +G AA ++G++R T+RKK+ +YG+ Sbjct: 433 LKKCKGQCATAARILGMHRTTVRKKIDEYGL 463 >UniRef50_D0XMN2 Transcriptional regulator PpsR, Fis family n=1 Tax=Brevundimonas subvibrioides ATCC 15264 RepID=D0XMN2_9CAUL Length = 474 Score = 69.8 bits (170), Expect = 2e-11, Method: Composition-based stats. Identities = 17/95 (17%), Positives = 41/95 (43%), Gaps = 1/95 (1%) Query: 3 EQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPL 62 + V+ V + +V Q+++ + + D+ +E+ Sbjct: 376 RPTYGFSIRNVARRTPPVPVAPA-IGGAVSQSVEQLTHLIGRVPMKDIVRESTDLIEKLC 434 Query: 63 LDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 ++ + T N+ AA ++G++R +L KL++YG+ Sbjct: 435 IEAALTLTSDNRASAADVLGLSRQSLYSKLRRYGL 469 >UniRef50_UPI00016C585F ornithine decarboxylase inhibitor-putative sigma54 transciptional regulator n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C585F Length = 643 Score = 69.8 bits (170), Expect = 2e-11, Method: Composition-based stats. Identities = 16/46 (34%), Positives = 30/46 (65%) Query: 53 LVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 + EVE+ + +++T N++RAA ++GI R TL +K+ +YG+ Sbjct: 597 ETIEEVEKRHILETLKHTDWNKSRAATILGIERSTLDRKIDRYGLT 642 >UniRef50_C1PFE6 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Bacillus coagulans 36D1 RepID=C1PFE6_BACCO Length = 610 Score = 69.8 bits (170), Expect = 3e-11, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 38/75 (50%), Gaps = 7/75 (9%) Query: 28 RDSVKQALKNYFAQLNGQDVNDLYELVL-----AEVEQPLLDMVMQYTRGNQTRAALMMG 82 + ++ + Y + +N + + V +E+ ++ +++T+GN AA M+ Sbjct: 538 EEEAERYVDEYVS--GETGLNGMEKQVTTLNPREAIERDMILEALKHTKGNAAAAAKMLD 595 Query: 83 INRGTLRKKLKKYGM 97 I R T +KL+KYG+ Sbjct: 596 IPRSTFYRKLRKYGL 610 >UniRef50_D0LSA1 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LSA1_HALO1 Length = 575 Score = 69.8 bits (170), Expect = 3e-11, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 1/85 (1%) Query: 12 TVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTR 71 S + D P+ QA A+ + LAEVE+ + + Sbjct: 480 AASADSPADPGPDSPIAAGGPQASARTDAEADAAIATP-AGATLAEVERAHILATLAACG 538 Query: 72 GNQTRAALMMGINRGTLRKKLKKYG 96 GN++ AA +GI TL +KLK+YG Sbjct: 539 GNRSEAARRLGIGAATLFRKLKRYG 563 >UniRef50_A6DT60 Sigma-54 dependent transcriptional regulator/response regulator n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DT60_9BACT Length = 463 Score = 69.8 bits (170), Expect = 3e-11, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 49/95 (51%), Gaps = 2/95 (2%) Query: 4 QRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLL 63 + + + V ++ ++ Q+ + L D V + +D + + +AE E+ L+ Sbjct: 371 RELRNVVERMAVLSQQEYLDLPNLPDHVLLGEQQLSETAKIEDKDKALD--VAENEKVLI 428 Query: 64 DMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 ++ + N+T AA +G++R TL ++LK++G+ Sbjct: 429 LKALKESNNNRTLAAERLGMSRRTLHRRLKQFGIT 463 >UniRef50_Q3A203 Two component signal transduction response regulator n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q3A203_PELCD Length = 575 Score = 69.4 bits (169), Expect = 3e-11, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 31/56 (55%) Query: 42 LNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 L G+ Y E EQ + + T N+ +AA ++GI+R TL +K++K+G+ Sbjct: 513 LQGEQAVGKYCADSEEQEQQQILAALDKTDWNKAKAARLLGIDRKTLYRKIEKFGL 568 >UniRef50_D0LAB0 Helix-turn-helix Fis-type n=1 Tax=Gordonia bronchialis DSM 43247 RepID=D0LAB0_GORB4 Length = 588 Score = 69.4 bits (169), Expect = 3e-11, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 12/87 (13%) Query: 21 QVTQKPLRDSVKQALKNYFAQLNGQDVNDLYE----------LVLAEVEQPLLDMVMQYT 70 LR++++ AL+ + DL L E+ + ++ Sbjct: 501 PGNIVQLREALEFALRR--RPVGEIQPEDLPGFCRSTAHRALTPLESAERDAIIAALESH 558 Query: 71 RGNQTRAALMMGINRGTLRKKLKKYGM 97 GN+ AA +G++R TL +KL+ YG+ Sbjct: 559 GGNRLHAAAALGMSRSTLYRKLRVYGI 585 >UniRef50_B5YI45 Transcriptional activator n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YI45_THEYD Length = 424 Score = 69.4 bits (169), Expect = 3e-11, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 33/53 (62%) Query: 45 QDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 ++ + L + E+ L+ ++ T GN+T+AA ++GI+ TLR K+ +YG+ Sbjct: 369 EEEKPVKAGKLKDAERELIVDALKKTEGNRTKAAKILGISVRTLRNKINEYGL 421 >UniRef50_Q39QH6 Sigma54 specific transcriptional regulator with PAS sensor, Fis family n=5 Tax=Geobacter RepID=Q39QH6_GEOMG Length = 609 Score = 69.4 bits (169), Expect = 4e-11, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 44/81 (54%), Gaps = 3/81 (3%) Query: 15 TVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQ 74 + + P + + L++Y Q G+ ++ ++ + ++E+ +L+ ++ GN+ Sbjct: 526 RLAQLCPHSTLPHEFAPGEDLESYIRQHLGK--KNISDM-MDDLERVILEKALEICNGNK 582 Query: 75 TRAALMMGINRGTLRKKLKKY 95 AA ++GI+R L KKL+KY Sbjct: 583 LHAAQLLGISRPGLYKKLQKY 603 >UniRef50_C8WZA1 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8WZA1_DESRD Length = 631 Score = 69.4 bits (169), Expect = 4e-11, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 47/109 (43%), Gaps = 15/109 (13%) Query: 5 RVNSDVLTVSTVNSQD----QVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELV------ 54 RV LTV V + + + L +++++AL + E Sbjct: 521 RVTPPQLTVGAVKALENHPWPGNVRELENTIQRALHLCEENEIDAACLGVPETAAAASSS 580 Query: 55 -----LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 L E+E+ ++ ++ T+GN A +GI+R TL +K+K+Y + Sbjct: 581 TPRGTLEEIERLAIEQTLEDTKGNMAETAKTLGISRATLYRKVKRYSLE 629 >UniRef50_A5G7F8 Two component, sigma-54 specific, transcriptional regulator, Fis family n=1 Tax=Geobacter uraniireducens Rf4 RepID=A5G7F8_GEOUR Length = 457 Score = 69.1 bits (168), Expect = 4e-11, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 47/94 (50%), Gaps = 4/94 (4%) Query: 4 QRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLL 63 + + + + S + + ++ L S + ++ + D+ L L VE+ + Sbjct: 366 RELRNTIRRASILATDQIISSDLLPFSPPKTAPSFAVT----GLPDVLPLPLWVVERDYI 421 Query: 64 DMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 V++ GN+++AA ++ I+R TL KL++YG+ Sbjct: 422 QKVLEKLEGNKSKAAKVLEIDRKTLYTKLERYGL 455 >UniRef50_A3ESN7 Putative two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Leptospirillum sp. Group II RepID=A3ESN7_9BACT Length = 458 Score = 69.1 bits (168), Expect = 4e-11, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 35/70 (50%), Gaps = 3/70 (4%) Query: 28 RDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGT 87 + + +++ + L E E+ + ++ T GN+ +AA ++GI+R + Sbjct: 385 PEWLPESVLAAGTLPGALEPEP---RTLKENERDQIRKILAETGGNKAQAARILGISRKS 441 Query: 88 LRKKLKKYGM 97 L KL++YG+ Sbjct: 442 LYAKLREYGL 451 >UniRef50_B0K4W6 GAF modulated sigma54 specific transcriptional regulator, Fis family n=5 Tax=Thermoanaerobacteraceae RepID=B0K4W6_THEPX Length = 576 Score = 69.1 bits (168), Expect = 4e-11, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 2/67 (2%) Query: 33 QALKNYFA--QLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRK 90 L +Y + Q ++ N L E+E+ + ++++ GN T+ A +GI R TL + Sbjct: 507 SHLPSYLSGSQTIRENSNSFSSTSLIELEKQEISQLLEHYGGNITKVAKALGIARNTLYR 566 Query: 91 KLKKYGM 97 KL KYG+ Sbjct: 567 KLYKYGL 573 >UniRef50_A1AME4 GAF modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Desulfuromonadales RepID=A1AME4_PELPD Length = 661 Score = 69.1 bits (168), Expect = 4e-11, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 14/91 (15%) Query: 21 QVTQKPLRDSVKQAL---KNYFAQLNGQDVNDLYELV-----------LAEVEQPLLDMV 66 + L ++++QA+ + L D+ E V L E+E+ + Sbjct: 563 PGNVRELENAIEQAVVRSDDSGVLLARHLTFDVVESVAPTGGRAEIVSLTEMEKQAITAA 622 Query: 67 MQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 + GN +AA +GI R TL +K+++YG+ Sbjct: 623 LHLYDGNIQKAASKLGIGRNTLYRKIREYGI 653 >UniRef50_C1P9P9 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Bacillaceae RepID=C1P9P9_BACCO Length = 457 Score = 69.1 bits (168), Expect = 4e-11, Method: Composition-based stats. Identities = 16/42 (38%), Positives = 29/42 (69%) Query: 56 AEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 +E+ L++ ++ GN++ AA +GI+R TL +KLKK+G+ Sbjct: 414 ENMEKQLIEKALRKAGGNKSAAAKELGISRVTLYQKLKKFGI 455 >UniRef50_C6W7H2 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6W7H2_DYAFD Length = 457 Score = 69.1 bits (168), Expect = 4e-11, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 50/95 (52%), Gaps = 4/95 (4%) Query: 4 QRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLL 63 + +N+ + + ++ ++ T L + A+++ G D+ L E E+ ++ Sbjct: 367 RELNNVIKRLVLLSKEEVATLSALPSEMITAMEDQQKPAPGSDLKALQET----HEKEMI 422 Query: 64 DMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 + V+Q R N+++AA ++ I+R TL K++KY + Sbjct: 423 EKVLQEVRYNKSKAAKLLNIDRKTLYYKIEKYHIE 457 >UniRef50_A3PJU4 GAF modulated sigma54 specific transcriptional regulator, Fis family n=4 Tax=Alphaproteobacteria RepID=A3PJU4_RHOS1 Length = 645 Score = 69.1 bits (168), Expect = 5e-11, Method: Composition-based stats. Identities = 18/46 (39%), Positives = 29/46 (63%) Query: 52 ELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 E L EVE+ + RGN TR A ++G++R TL +K+++YG+ Sbjct: 595 EQSLDEVEETAIRQAFAAARGNVTRVAAILGVSRPTLYRKMRQYGI 640 >UniRef50_A3WHU7 Transcriptional regulator PpsR1; Fis family protein n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WHU7_9SPHN Length = 474 Score = 69.1 bits (168), Expect = 5e-11, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 37/73 (50%) Query: 25 KPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGIN 84 P + ++++ + + ++ +E+ ++ +QYT N+ AA ++G++ Sbjct: 394 PPGSQDLPRSVEQLTDLVGRMSLKEIVRESTDLIERLCIEAALQYTSDNRASAAEILGLS 453 Query: 85 RGTLRKKLKKYGM 97 R +L KL ++G+ Sbjct: 454 RQSLYSKLHRHGL 466 >UniRef50_P26047 Signal-transduction and transcriptional-control protein n=10 Tax=Clostridium RepID=STC_CLOBE Length = 632 Score = 69.1 bits (168), Expect = 5e-11, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 1/48 (2%) Query: 51 YEL-VLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 Y++ L E+E+ + + + GN ++A ++GINR TL K+KKY + Sbjct: 582 YDMCSLEELEKRAISICINQCGGNISKACRILGINRSTLYIKIKKYNI 629 >UniRef50_A3EPR9 Putative two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Leptospirillum RepID=A3EPR9_9BACT Length = 489 Score = 69.1 bits (168), Expect = 5e-11, Method: Composition-based stats. Identities = 19/45 (42%), Positives = 30/45 (66%) Query: 53 LVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 + EVE+ L+ + ++ N+T+AA M+GI+ TLR KL +YGM Sbjct: 418 QSVWEVERELIRVTLEACGQNRTQAAKMLGISVRTLRNKLNEYGM 462 >UniRef50_A8MEN4 Putative sigma54 specific transcriptional regulator n=1 Tax=Alkaliphilus oremlandii OhILAs RepID=A8MEN4_ALKOO Length = 452 Score = 68.7 bits (167), Expect = 5e-11, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 37/72 (51%), Gaps = 1/72 (1%) Query: 27 LRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRG 86 + + + + ++ Q D+ + L + E + + T+GN+ AA ++GI+ Sbjct: 379 ISEDIDEVMRQVIYQAQFHTNTDI-AMQLEKEEMETIKNALISTKGNRAEAAKILGISES 437 Query: 87 TLRKKLKKYGMN 98 TL +++KK+ ++ Sbjct: 438 TLWRRIKKFNIS 449 >UniRef50_Q2TJQ8 PpsR2 n=1 Tax=Thiocapsa roseopersicina RepID=Q2TJQ8_THIRO Length = 455 Score = 68.7 bits (167), Expect = 5e-11, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 38/64 (59%) Query: 35 LKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKK 94 L ++ + L + ++ +EQ ++ ++ TRGN+T A ++G++R +L KLK+ Sbjct: 381 LNALSGRIGKGPLRALVDEAISVLEQHYIEEALELTRGNRTATADLLGLSRQSLYVKLKR 440 Query: 95 YGMN 98 YGM+ Sbjct: 441 YGMD 444 >UniRef50_B5YJY4 Response regulator HsfA n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YJY4_THEYD Length = 421 Score = 68.7 bits (167), Expect = 5e-11, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 2/65 (3%) Query: 35 LKNYF--AQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKL 92 L Y Q + + + + E+ L+ +Q +RGN ++AA ++GI+R L++KL Sbjct: 355 LPAYLLKTQHSKKTPHGNLREAVDNFEKELIWSALQKSRGNISKAAELLGIHRQQLQRKL 414 Query: 93 KKYGM 97 K++ + Sbjct: 415 KQFKI 419 >UniRef50_B8DQD3 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Desulfovibrionales RepID=B8DQD3_DESVM Length = 515 Score = 68.7 bits (167), Expect = 5e-11, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 32/56 (57%) Query: 42 LNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 D + L E E+ ++ V++ GN+T AA ++ I+R +L +KLK+YG+ Sbjct: 460 AGEGMTPDGRPMTLDENERAHIEWVLELAGGNRTHAAKVLDIDRASLWRKLKRYGL 515 >UniRef50_C1A979 NtrC family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A979_GEMAT Length = 459 Score = 68.7 bits (167), Expect = 6e-11, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 32/53 (60%) Query: 44 GQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYG 96 G + L LAE+E+ + ++ + +Q +AA ++GI+ TL +K+++YG Sbjct: 396 GARPTPVMTLSLAELERRHIAEILDRCQWHQGQAAELLGISPKTLYRKIREYG 448 >UniRef50_C0Z8K3 Probable transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z8K3_BREBN Length = 577 Score = 68.3 bits (166), Expect = 6e-11, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 3/62 (4%) Query: 39 FAQLNGQDVNDLYEL---VLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKY 95 L D + + L E E+ + ++ + GN ++AA M+ I R TL +K+++Y Sbjct: 507 LEGLMEADPPESSDHAIPSLRETERIAIKKALEKSGGNVSKAAKMLEIGRNTLYRKIEEY 566 Query: 96 GM 97 + Sbjct: 567 QI 568 >UniRef50_Q1K1J7 Response regulator receiver protein n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K1J7_DESAC Length = 98 Score = 68.3 bits (166), Expect = 7e-11, Method: Composition-based stats. Identities = 19/45 (42%), Positives = 31/45 (68%) Query: 54 VLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 L EVE+ L+ + GNQT+AA +G++R T+R ++KK+G+N Sbjct: 54 TLDEVEKMLIQQALLRYDGNQTKAANCLGMSRDTIRYRMKKFGLN 98 >UniRef50_B5YK20 Response regulator HsfA n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YK20_THEYD Length = 448 Score = 68.3 bits (166), Expect = 7e-11, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 44/89 (49%), Gaps = 6/89 (6%) Query: 10 VLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQY 69 + + + Q+ + L +K+ F + G+ + L E+E+ + +++ Sbjct: 365 IERAVVLCNSSQIDVEHLPQDLKELKIEVFTKKEGKF------MSLEELEKEYIKWILRE 418 Query: 70 TRGNQTRAALMMGINRGTLRKKLKKYGMN 98 N+T AA ++GI+R +L +KLK YG+ Sbjct: 419 VGNNKTVAAQILGIDRVSLWRKLKNYGIE 447 >UniRef50_B8FGV0 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FGV0_DESAA Length = 765 Score = 68.3 bits (166), Expect = 7e-11, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 38/59 (64%), Gaps = 1/59 (1%) Query: 39 FAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 +L G++ L + V A E+ + +++ + N++RAA ++G++R TL +K+K+YG+ Sbjct: 708 LPKLLGKEEPTL-KEVAAAAEREYIIQLLERYKWNRSRAAEILGVDRRTLFRKIKEYGL 765 >UniRef50_P0AFB9 Nitrogen regulation protein NR(I) n=502 Tax=Bacteria RepID=NTRC_ECO57 Length = 469 Score = 68.3 bits (166), Expect = 7e-11, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 8/90 (8%) Query: 9 DVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQ 68 + ST Q L +AL++ +L E+E+ LL ++ Sbjct: 388 STVAESTSQMQPDSWATLLAQWADRALRS--------GHQNLLSEAQPELERTLLTTALR 439 Query: 69 YTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 +T+G++ AA ++G R TL +KLK+ GM Sbjct: 440 HTQGHKQEAARLLGWGRNTLTRKLKELGME 469 >UniRef50_C7LP79 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Desulfovibrionales RepID=C7LP79_DESBD Length = 458 Score = 68.3 bits (166), Expect = 7e-11, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 37/60 (61%) Query: 39 FAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 F Q + Q+ + L E+E+ + MVM +GN++RAA ++GI R TL +KL++Y + Sbjct: 387 FCQKSCQNPREKGFSTLEELERSHISMVMHAVQGNKSRAAQVLGIGRKTLYRKLEEYRLT 446 >UniRef50_D2EVL6 Putative uncharacterized protein n=3 Tax=Bacteroides RepID=D2EVL6_9BACE Length = 476 Score = 68.3 bits (166), Expect = 7e-11, Method: Composition-based stats. Identities = 16/43 (37%), Positives = 27/43 (62%) Query: 56 AEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 E E+ + ++ T N++RAA ++GI+R TL KLK Y ++ Sbjct: 432 EEAEKHQIIEALRQTGNNKSRAAQLLGIDRKTLYNKLKLYNIS 474 >UniRef50_Q07RZ7 Transcriptional regulator, Fis family / DNA-binding protein Fis n=9 Tax=Alphaproteobacteria RepID=Q07RZ7_RHOP5 Length = 477 Score = 68.3 bits (166), Expect = 8e-11, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 38/90 (42%) Query: 8 SDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVM 67 + T + + +++ + + DL +E+ ++ + Sbjct: 376 PSFGFAVRNIEKRLSTAPSSKRELPRSVAQLTELIGRVPLRDLVRETTDVIEKLSIEAAL 435 Query: 68 QYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 + T N+ AA M+G++R +L KL++YG+ Sbjct: 436 ELTGDNRASAADMLGLSRQSLYVKLRRYGL 465 >UniRef50_Q4UYV5 Transcriptional regulator n=5 Tax=Xanthomonas RepID=Q4UYV5_XANC8 Length = 680 Score = 68.3 bits (166), Expect = 8e-11, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 44/97 (45%), Gaps = 2/97 (2%) Query: 4 QRVNSDVLTVSTVNSQDQVTQKPLRDS-VKQALKNYFAQLNGQDVNDLYELV-LAEVEQP 61 +++ + + T + + S + L V +D+ V L + E+ Sbjct: 582 RQLRNVLRTAAVLCSDAVIRLPNLPQEIVDAGSAPCLVDGRAVAADDMPGRVALDQAERL 641 Query: 62 LLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 +L ++ R N +R A +GI+R TL +KL+K+G+ Sbjct: 642 VLQQQLERHRWNVSRTADALGISRNTLYRKLRKHGLE 678 >UniRef50_B8DQ72 Two component, sigma54 specific, transcriptional regulator, Fis family n=6 Tax=Desulfovibrio RepID=B8DQ72_DESVM Length = 486 Score = 68.3 bits (166), Expect = 8e-11, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 49/96 (51%), Gaps = 1/96 (1%) Query: 3 EQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQ-LNGQDVNDLYELVLAEVEQP 61 E + + V + L + Q ++ + L+ D +++++ ++ V + Sbjct: 384 EPDLKQALEASRGVRPGSEGPACDLSLAADQTMQELIRRTLSESDGDNVFDSLMDHVGRL 443 Query: 62 LLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 ++ + T GN+TRAA ++G++R TL K++KYG+ Sbjct: 444 VVREALHLTGGNRTRAARLLGLSRPTLLAKIEKYGL 479 >UniRef50_C1ZLR0 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZLR0_PLALI Length = 555 Score = 68.3 bits (166), Expect = 8e-11, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 11/104 (10%) Query: 5 RVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQ-----------DVNDLYEL 53 + + ++ + Q PL +V+Q K + Q + L+ Sbjct: 448 NSAASPFHQAIPTAETKGEQDPLTVAVRQWAKTRLQEAKLQANLAIEAAPQLEDAGLHAR 507 Query: 54 VLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 LA+ E L ++ R N + AA ++GI+R TL++KL+++G+ Sbjct: 508 FLAQAEAELFQTILHQCRQNMSEAARLLGIHRTTLKRKLEEFGL 551 >UniRef50_B5JMF6 Sigma-54 interaction domain family n=2 Tax=Verrucomicrobia RepID=B5JMF6_9BACT Length = 518 Score = 67.9 bits (165), Expect = 8e-11, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 1/78 (1%) Query: 18 SQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRA 77 + + +P+ SV A + + L L E+E+ + ++ T GN+T+A Sbjct: 431 APPAMPPQPVSQSVPAA-SQPSSASGSETTTVAPPLPLEEIEKKHILATLETTDGNRTQA 489 Query: 78 ALMMGINRGTLRKKLKKY 95 A ++GI+ TLR K+ Y Sbjct: 490 AKLLGISIRTLRNKISAY 507 >UniRef50_Q0A929 Sigma54 specific transcriptional regulator, Fis family n=9 Tax=Proteobacteria RepID=Q0A929_ALHEH Length = 327 Score = 67.9 bits (165), Expect = 8e-11, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 29/44 (65%) Query: 55 LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 + E+E L+ ++ T GN+++AA ++G+ R TL ++KKY + Sbjct: 271 MDELEADLIRQALERTGGNRSQAARLLGLTRDTLLYRMKKYDLT 314 >UniRef50_C8QYP0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QYP0_9DELT Length = 506 Score = 67.9 bits (165), Expect = 8e-11, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 38/100 (38%), Gaps = 8/100 (8%) Query: 4 QRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVND--------LYELVL 55 + S L + + + ++ + D L L Sbjct: 401 EPAASAELPEPSGPADAEPVDAAEPEASPPTVATEAVAAEASGSPDSAATLDSALAGRSL 460 Query: 56 AEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKY 95 EVE+ ++ ++ T N+T AA M+GI+ TLR KL +Y Sbjct: 461 REVERQMILQALRQTDDNRTHAAKMLGISVRTLRNKLNEY 500 >UniRef50_A1K4T7 Sigma-54 dependent transcriptional regulator n=4 Tax=Betaproteobacteria RepID=A1K4T7_AZOSB Length = 686 Score = 67.9 bits (165), Expect = 9e-11, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 37/83 (44%), Gaps = 2/83 (2%) Query: 16 VNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQT 75 ++S QV L + + ++ + L E+ + + +GN Sbjct: 588 MDSTPQVRVDELPEEILASVPQAARPAAEGAEPE--CPSLEAAERRAIQKAVINFQGNLA 645 Query: 76 RAALMMGINRGTLRKKLKKYGMN 98 +AA ++GI+R TL +K+++Y + Sbjct: 646 QAARLLGISRSTLYRKVERYALE 668 >UniRef50_C9S255 Proprionate catabolism activator, Fis family n=2 Tax=Geobacillus RepID=C9S255_GEOSY Length = 639 Score = 67.9 bits (165), Expect = 9e-11, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 39/63 (61%), Gaps = 1/63 (1%) Query: 36 KNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKY 95 + + + + D DL + V E+ + V++ RG++T+AA ++GI+R TL +K+K Y Sbjct: 564 ELFGSHIEILDSTDLTKEV-ENWERQRILQVLREVRGSKTKAAALLGISRTTLWRKIKDY 622 Query: 96 GMN 98 G++ Sbjct: 623 GID 625 >UniRef50_A8FHB1 Transcriptional regulator n=1 Tax=Bacillus pumilus SAFR-032 RepID=A8FHB1_BACP2 Length = 593 Score = 67.9 bits (165), Expect = 9e-11, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 34/66 (51%) Query: 29 DSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTL 88 + K + + + ++ L E+E+ ++ V++ NQ++AA + INR TL Sbjct: 528 NEAKAVMNQLAFENEEKQLSSYLNGTLDEIERRIIKTVLEEENMNQSKAAKRLNINRTTL 587 Query: 89 RKKLKK 94 +KLK+ Sbjct: 588 WRKLKE 593 >UniRef50_D2R521 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R521_9PLAN Length = 474 Score = 67.9 bits (165), Expect = 9e-11, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 45/86 (52%), Gaps = 2/86 (2%) Query: 13 VSTVNSQDQVTQKPLRDSV--KQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYT 70 S + + ++++ LR + +A+ + + + + + L ++E+ L++ + + Sbjct: 377 ASILATSEKLSADDLRSWLLEPEAMHSAGSGNSSGESELQAGMKLEDMERRLIEATLDHY 436 Query: 71 RGNQTRAALMMGINRGTLRKKLKKYG 96 G++ RAA +GI TL KL++YG Sbjct: 437 EGHRARAAQALGIGIRTLSNKLRQYG 462 >UniRef50_C0QUD7 Nitrogen assimilation regulatory protein n=1 Tax=Persephonella marina EX-H1 RepID=C0QUD7_PERMH Length = 456 Score = 67.9 bits (165), Expect = 9e-11, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 54/90 (60%), Gaps = 4/90 (4%) Query: 9 DVLTVSTVNSQDQVTQKP-LRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVM 67 ++LTV+ + + KP + D+ ++ LKN + E + ++++ ++ + Sbjct: 370 NILTVNDLTFLREKRVKPQIEDNFEEILKNRVLASLEEGSI---EEIKEKIDKIIVQTAL 426 Query: 68 QYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 +YT+ NQ +A+ ++GINR TLRKK++KYG+ Sbjct: 427 EYTKHNQVKASQLLGINRATLRKKIQKYGL 456 >UniRef50_D0LUW9 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LUW9_HALO1 Length = 623 Score = 67.9 bits (165), Expect = 1e-10, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 31/58 (53%) Query: 40 AQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 + +G +A VE+ + ++ GNQT AA +G++R +L KL+KYG+ Sbjct: 559 SAADGPPAEVDVREYIATVERDAIVAALEECGGNQTHAARRLGMSRRSLIYKLEKYGL 616 >UniRef50_B8J7L3 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Anaeromyxobacter RepID=B8J7L3_ANAD2 Length = 484 Score = 67.9 bits (165), Expect = 1e-10, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 34/70 (48%) Query: 28 RDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGT 87 + A+ L LAEVE+ ++ V+ N++ AA ++GI+R T Sbjct: 394 AADLPAAVVRAPTGAEAVPPPGEGGLTLAEVERAHVEKVLAMVGWNRSLAARLLGIDRRT 453 Query: 88 LRKKLKKYGM 97 L K+++YG+ Sbjct: 454 LFTKIQRYGL 463 >UniRef50_B8FEL6 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FEL6_DESAA Length = 619 Score = 67.9 bits (165), Expect = 1e-10, Method: Composition-based stats. Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 17/98 (17%) Query: 4 QRVNSDVLTVSTVNSQDQ---VTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQ 60 Q V LTV+ ++ + PL +++ A L G VE+ Sbjct: 536 QNVIQRYLTVNRLDFISPEPVQAKAPLSQAMENG-----ADLRGAT---------ENVEK 581 Query: 61 PLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 L+ + RG+++R A +GI+R TL +K+K+ G++ Sbjct: 582 ALIKKALDQHRGHKSRTAESLGISRKTLFRKMKRLGLS 619 >UniRef50_C4FI59 AAA family ATPase n=1 Tax=Sulfurihydrogenibium yellowstonense SS-5 RepID=C4FI59_9AQUI Length = 531 Score = 67.9 bits (165), Expect = 1e-10, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 49/95 (51%), Gaps = 15/95 (15%) Query: 16 VNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVL------------AEV-EQPL 62 +N + L + +++A+ A+ +V+DL + ++ E+ E+ Sbjct: 438 LNYDYPGNIRELENIIERAV--ILAKGKFIEVSDLPDEIVYNTKILTQNDLDEEIDEKQK 495 Query: 63 LDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 + V++ N+++AA ++ I+R TL +KLKKYG+ Sbjct: 496 ILRVLESVNWNKSKAAKILNIDRVTLWRKLKKYGL 530 >UniRef50_D0LHR5 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LHR5_HALO1 Length = 488 Score = 67.9 bits (165), Expect = 1e-10, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 32/54 (59%) Query: 44 GQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 G+ + L + + VE+ + ++ G+ ++AA +GI+R ++ K+K+YG+ Sbjct: 431 GRPLKRLIDETVKAVERQAIAEALERCEGSPSKAARRLGISRASVYNKIKEYGL 484 >UniRef50_B2A2S4 PAS modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Clostridia RepID=B2A2S4_NATTJ Length = 471 Score = 67.5 bits (164), Expect = 1e-10, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 30/51 (58%) Query: 47 VNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 + ++ +VE+ ++ ++ N++ AA ++ I R TL +K+KKYG+ Sbjct: 413 PEEGLNEIVEQVEKKVIRETLELYDFNKSMAASILNIPRSTLYRKMKKYGL 463 >UniRef50_UPI00016C3E44 probable response regulatory protein (atoC) n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C3E44 Length = 465 Score = 67.5 bits (164), Expect = 1e-10, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 38/84 (45%), Gaps = 2/84 (2%) Query: 12 TVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTR 71 ++ ++ ++T + +K + L L EVE+ ++ + T Sbjct: 371 SMMVLDLDGELTPDDFPEDP--GVKPAGTAERPHGPDQLVGRPLDEVERYYIEKALDLTG 428 Query: 72 GNQTRAALMMGINRGTLRKKLKKY 95 GN+ AA ++ I+ TL +K++++ Sbjct: 429 GNREEAARLLNISERTLYRKIQEW 452 >UniRef50_UPI0001C34ECA sigma-54 dependent transcriptional regulator n=1 Tax=Clostridium sp. M62/1 RepID=UPI0001C34ECA Length = 644 Score = 67.5 bits (164), Expect = 1e-10, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 35/88 (39%), Gaps = 8/88 (9%) Query: 10 VLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQY 69 + T+ + PL F D E+ + ++ Sbjct: 565 RNVLPTLPQEPGSPALPLPAEPSLPPAAPFRSAEEDSPKDS--------ERETILKALEI 616 Query: 70 TRGNQTRAALMMGINRGTLRKKLKKYGM 97 R +++RAA ++GI+R TL +K+K++ + Sbjct: 617 CRYSRSRAAALLGISRSTLWRKMKEFNL 644 >UniRef50_C7RB54 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RB54_KANKD Length = 442 Score = 67.5 bits (164), Expect = 1e-10, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 30/48 (62%) Query: 51 YELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 + + +VE+ ++ + TR N+T AA ++GI+ T+R K+KK G+ Sbjct: 395 LDQFIEKVEKAEIEKALNETRWNRTEAAKLLGISFRTIRYKMKKLGIE 442 >UniRef50_UPI0001972FEB sigma-54 factor, interaction region n=1 Tax=Clostridium sp. M62/1 RepID=UPI0001972FEB Length = 638 Score = 67.5 bits (164), Expect = 1e-10, Method: Composition-based stats. Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 1/80 (1%) Query: 19 QDQVTQKPLRDSVKQALKNYFAQLNGQDV-NDLYELVLAEVEQPLLDMVMQYTRGNQTRA 77 + VT R+ LKN F+ + L E + EQ ++ ++ GN+ + Sbjct: 556 ERIVTLSDGREISASWLKNIFSFSGKTEPLPGLLEDTVGNCEQTEIEHALRKNHGNRAKT 615 Query: 78 ALMMGINRGTLRKKLKKYGM 97 A +GI+ TL +K+KKYG+ Sbjct: 616 AKDLGISTATLWRKMKKYGL 635 >UniRef50_A9CI57 Transcriptional regulator n=6 Tax=Rhizobiaceae RepID=A9CI57_AGRT5 Length = 319 Score = 67.5 bits (164), Expect = 1e-10, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 55 LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 LAE E+ L V+ T GN T+AA ++GI+R TL +K+KK+ ++ Sbjct: 276 LAEAERSALRRVLSRTNGNVTQAASLLGISRATLHRKMKKFDVH 319 >UniRef50_Q0RWI0 Transcriptional regulator n=1 Tax=Rhodococcus jostii RHA1 RepID=Q0RWI0_RHOSR Length = 610 Score = 67.5 bits (164), Expect = 1e-10, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 41/86 (47%), Gaps = 8/86 (9%) Query: 21 QVTQKPLRDSVKQALKNY-FAQLNGQDVNDL-YELV------LAEVEQPLLDMVMQYTRG 72 + L ++++ AL ++ +D+ Y+ L +E+ + ++ G Sbjct: 523 PGNVRQLDEALQAALDKRPVGEIQCEDLPGYCYQTSGRTLTALESIERDAIVQALRDAGG 582 Query: 73 NQTRAALMMGINRGTLRKKLKKYGMN 98 N+ +AA +GI R +L +KLK +G+ Sbjct: 583 NRVQAAASLGIARSSLYRKLKSFGIE 608 >UniRef50_D2R262 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R262_9PLAN Length = 478 Score = 67.5 bits (164), Expect = 1e-10, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 43/92 (46%), Gaps = 1/92 (1%) Query: 4 QRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLL 63 +++ + + T+ +++ + L + A + ++L L +E+ + Sbjct: 374 RQLRNAIETMVVLDTDGILDIDDLPPELVDA-EELRTPAIASGPSELIGQPLDNIERWAI 432 Query: 64 DMVMQYTRGNQTRAALMMGINRGTLRKKLKKY 95 + ++ T GN+ AA ++GI TL +KL KY Sbjct: 433 EETLKLTSGNREEAARILGIGARTLYRKLDKY 464 >UniRef50_Q1D5E1 Sigma-54 dependent transcriptional regulator, Fis family n=4 Tax=Myxococcales RepID=Q1D5E1_MYXXD Length = 529 Score = 67.5 bits (164), Expect = 1e-10, Method: Composition-based stats. Identities = 20/43 (46%), Positives = 30/43 (69%) Query: 55 LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 LAEVE+ + V+ +GN+T AA ++ I R TL +KLK+YG+ Sbjct: 483 LAEVERRHILRVLDAVKGNRTAAARVLAIGRNTLARKLKEYGL 525 >UniRef50_C0STX4 Putative transcriptional regulator n=3 Tax=Rhodococcus RepID=C0STX4_9NOCA Length = 608 Score = 67.1 bits (163), Expect = 1e-10, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 27/43 (62%) Query: 56 AEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 + E+ +D ++ GN++RAA ++GI R TL +K++ ++ Sbjct: 556 EQAERDAIDGALREAGGNRSRAAEILGIGRTTLYRKMRSLKID 598 >UniRef50_C6JUF7 PchR n=3 Tax=Pseudomonas RepID=C6JUF7_PSEFL Length = 618 Score = 67.1 bits (163), Expect = 1e-10, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 47/91 (51%), Gaps = 5/91 (5%) Query: 3 EQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPL 62 ++ +D + +++++ LR+ V ++L+ + + + + L E+E L Sbjct: 531 QRDEAADEVPTPAHSTEEEGGAGTLREPVLESLQAFVSGRQR-----VLNMSLEEIELRL 585 Query: 63 LDMVMQYTRGNQTRAALMMGINRGTLRKKLK 93 + + ++ + GN T AA M+G++R + +LK Sbjct: 586 VRLALERSGGNITAAAQMLGMSRAQVSYRLK 616 >UniRef50_Q3AQY4 Transcriptional regulator, Fis family / DNA-binding protein Fis n=1 Tax=Chlorobium chlorochromatii CaD3 RepID=Q3AQY4_CHLCH Length = 415 Score = 67.1 bits (163), Expect = 2e-10, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 28/51 (54%) Query: 47 VNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 + L EVE+ + +++ GN+ + A +GI TL +K+K+YG+ Sbjct: 365 PENKPLRSLDEVEKESIREALEHHNGNKRQIARALGITERTLYRKIKQYGL 415 >UniRef50_Q1YV60 Putative polar flagellar protein FlaK n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YV60_9GAMM Length = 368 Score = 67.1 bits (163), Expect = 2e-10, Method: Composition-based stats. Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 4/95 (4%) Query: 5 RVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLY--ELVLAEVEQPL 62 + S + VS +S QV L VKQ + AQ G + + + L ++E L Sbjct: 272 DIVSAISGVSEADSLAQVNDAQLDQDVKQTI--LLAQGGGAFPEEGFHLKQHLLDIESNL 329 Query: 63 LDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 + + ++ GN ++ A M+ + R TL +K+ K+G+ Sbjct: 330 IRLALKNASGNVSKTARMLNLQRTTLIEKINKHGL 364 >UniRef50_A7HBA5 Two component, sigma54 specific, transcriptional regulator, Fis family n=6 Tax=Bacteria RepID=A7HBA5_ANADF Length = 466 Score = 67.1 bits (163), Expect = 2e-10, Method: Composition-based stats. Identities = 17/44 (38%), Positives = 30/44 (68%) Query: 54 VLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 L EVE+ + V+ + GN +++A ++GI+R TL K++KYG+ Sbjct: 404 SLEEVEKRHVAAVLAHANGNVSQSARILGIDRVTLYNKMRKYGL 447 >UniRef50_A4ACP0 Transcriptional regulator PpsR n=2 Tax=unclassified Gammaproteobacteria RepID=A4ACP0_9GAMM Length = 454 Score = 67.1 bits (163), Expect = 2e-10, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 40/88 (45%), Gaps = 4/88 (4%) Query: 10 VLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQY 69 + V ++D L S++Q + + DL +E ++ ++ Sbjct: 364 IRDVERRVARDHPVSAKLPGSIEQVTQRV----GRVPLKDLVRESTDLIEALCIETALEV 419 Query: 70 TRGNQTRAALMMGINRGTLRKKLKKYGM 97 T+ N+ AA ++G++R +L KL+++ + Sbjct: 420 TQDNRASAAELLGLSRQSLYAKLRRFNI 447 >UniRef50_B5YG95 FrgC n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YG95_THEYD Length = 430 Score = 67.1 bits (163), Expect = 2e-10, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 28/47 (59%) Query: 52 ELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 L +E+ + ++ T GN+ +A+ ++GI+ TL K+K++G+ Sbjct: 384 NEDLKSIEKKAIIEALKKTGGNKKQASQLLGISLRTLYYKIKEFGIE 430 >UniRef50_Q8RE11 Acetoacetate metabolism regulatory protein atoC n=15 Tax=Fusobacterium RepID=Q8RE11_FUSNN Length = 469 Score = 67.1 bits (163), Expect = 2e-10, Method: Composition-based stats. Identities = 17/45 (37%), Positives = 31/45 (68%) Query: 54 VLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 L EVE+ ++ + +Q TR N+ + ++GI R TL +K++KYG++ Sbjct: 423 SLEEVERVVIAIALQKTRWNKQETSKILGIGRTTLYEKIRKYGLD 467 >UniRef50_C6IXE0 Transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IXE0_9BACL Length = 612 Score = 67.1 bits (163), Expect = 2e-10, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 30/48 (62%) Query: 50 LYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 L + E E L+ ++ T GN++ AA ++GI+RGTL KK++ Y + Sbjct: 564 LRPRITPEEEMELMKEALERTAGNKSNAAKLLGISRGTLYKKIRDYNL 611 >UniRef50_A6M003 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Bacteria RepID=A6M003_CLOB8 Length = 472 Score = 66.8 bits (162), Expect = 2e-10, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 47/96 (48%), Gaps = 1/96 (1%) Query: 4 QRVNSDVLTVSTVNSQDQVTQKPLRDSVK-QALKNYFAQLNGQDVNDLYELVLAEVEQPL 62 + + + V +++ + + L S+K + ++ + G D VL EVE+ Sbjct: 377 RELENAVEHAIIMSNTRVILPENLPLSIKVEDVEADGTIILGDDSFKPLREVLLEVEKRH 436 Query: 63 LDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 + ++ T GN+T+AA ++ I+R L K+ + ++ Sbjct: 437 ISEAIERTGGNRTQAAKLLQISRRALLYKINENNID 472 >UniRef50_Q1Q0T6 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q0T6_9BACT Length = 472 Score = 66.8 bits (162), Expect = 2e-10, Method: Composition-based stats. Identities = 17/46 (36%), Positives = 33/46 (71%) Query: 53 LVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 L L ++E+ L+ ++ ++ N T+AA ++G+ RGT R +L+KYG++ Sbjct: 426 LSLDDLEKQLVAKALERSKNNITKAAKLLGLTRGTFRYRLQKYGIS 471 >UniRef50_Q02BY0 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q02BY0_SOLUE Length = 447 Score = 66.8 bits (162), Expect = 2e-10, Method: Composition-based stats. Identities = 20/45 (44%), Positives = 30/45 (66%) Query: 53 LVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 L L + E+ LL ++ T GNQT+AA ++ I R TLR K+KK+ + Sbjct: 402 LSLEDNERSLLVRALEKTEGNQTQAARLLRITRDTLRYKMKKFNL 446 >UniRef50_B4U6M7 PAS modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Aquificaceae RepID=B4U6M7_HYDS0 Length = 519 Score = 66.8 bits (162), Expect = 2e-10, Method: Composition-based stats. Identities = 15/39 (38%), Positives = 26/39 (66%) Query: 59 EQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 E+ + V++ N++ AA M+GI+R TL +KLK+ G+ Sbjct: 480 EKERIKAVLEKVNYNKSLAAKMLGIHRTTLWRKLKELGI 518 >UniRef50_A5EQ87 DNA-binding protein Fis / transcriptional regulator, Fis family n=2 Tax=Bradyrhizobium RepID=A5EQ87_BRASB Length = 475 Score = 66.8 bits (162), Expect = 2e-10, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 42/95 (44%), Gaps = 4/95 (4%) Query: 3 EQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPL 62 + R+ + V S D + S +Q + + +L +E+ Sbjct: 374 QARLGFTIRNVGPRISSDGGDHGYIPRSREQ----LAELIGRVPLKELVRETTDVIERMC 429 Query: 63 LDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 ++ ++ T N+ AA M+G++R +L KL++YG+ Sbjct: 430 IETALKLTGDNRATAAEMLGLSRQSLYVKLRRYGL 464 >UniRef50_B8DK61 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfovibrio RepID=B8DK61_DESVM Length = 448 Score = 66.8 bits (162), Expect = 2e-10, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 8/89 (8%) Query: 10 VLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQY 69 + + + L + ++ FA L G + LAEVE+ + +++ Sbjct: 368 IERAVALTDGQTIGLLDLPEDIR---NLEFATLEGDGLP-----TLAEVERRYVIRILEK 419 Query: 70 TRGNQTRAALMMGINRGTLRKKLKKYGMN 98 T N+ AA ++G+ R TL +KLK+YG+ Sbjct: 420 TGYNKRLAAQVLGVPRTTLWRKLKEYGVE 448 >UniRef50_B1KVR7 Sigma-54 dependent transcriptional regulator n=11 Tax=Clostridium RepID=B1KVR7_CLOBM Length = 470 Score = 66.8 bits (162), Expect = 2e-10, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 28/44 (63%) Query: 55 LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 L +E ++ + + +GN +A+ ++GI+R T+ +K+ KY ++ Sbjct: 417 LDILEHKAIEKALIHCKGNIVQASELLGISRATIYRKINKYNID 460 >UniRef50_C8N8F3 DNA-binding protein Fis n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8N8F3_9GAMM Length = 85 Score = 66.8 bits (162), Expect = 2e-10, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 46/74 (62%), Gaps = 2/74 (2%) Query: 26 PLRDSVKQALKNYFAQLNGQD--VNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGI 83 +R +++ ++ Y+A D + LY+L+++E E ++ +MQ R NQ+ AA ++GI Sbjct: 5 TIRAAIEHSIAEYYALHENHDERITGLYDLIISEAEHAIISHIMQRCRDNQSHAARILGI 64 Query: 84 NRGTLRKKLKKYGM 97 R TL+KKL ++ + Sbjct: 65 TRNTLKKKLTQHRI 78 >UniRef50_B3DV39 DNA-binding response regulator, NtrC family (Contains REC, AAA-type ATPase, and DNA-binding Fis domains) n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DV39_METI4 Length = 442 Score = 66.8 bits (162), Expect = 2e-10, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 33/45 (73%) Query: 54 VLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 +A++E+ L++ ++ ++GN+T AA ++ I+R L K+K++G++ Sbjct: 397 AIAKLEKMLIEKALKESQGNRTEAARLLNIHRSLLYLKMKEHGID 441 >UniRef50_Q1IQS1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IQS1_ACIBL Length = 466 Score = 66.8 bits (162), Expect = 2e-10, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 1/71 (1%) Query: 29 DSVKQALKNYFAQLNGQDVNDLYELV-LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGT 87 D + +L+ + N V++ Y+ L ++E+ + V G++ A M+GI+R T Sbjct: 384 DDLPPSLQAMAPKKNAPAVSEGYDSTDLEDIERTTIQRVFDQVGGDKGLALKMLGISRAT 443 Query: 88 LRKKLKKYGMN 98 L +K+K+Y ++ Sbjct: 444 LYRKIKRYNID 454 >UniRef50_D0LQ47 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LQ47_HALO1 Length = 665 Score = 66.8 bits (162), Expect = 2e-10, Method: Composition-based stats. Identities = 18/44 (40%), Positives = 29/44 (65%) Query: 55 LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 L E+E+ + +Q T GN+ +AA ++ I+R TL KKLK Y ++ Sbjct: 621 LRELEREGIIAALQATGGNKVQAAALLQIDRSTLYKKLKDYDIS 664 >UniRef50_D2L943 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L943_9DELT Length = 482 Score = 66.8 bits (162), Expect = 2e-10, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 37/72 (51%) Query: 26 PLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINR 85 P +L Y + L+E ++ ++ ++ T GN+++AA ++G++R Sbjct: 400 PAEADPGDSLARYVRRELASGRESLFEDLMDRFGLLVIREALEATGGNRSQAARLLGLSR 459 Query: 86 GTLRKKLKKYGM 97 TL K++KYG+ Sbjct: 460 PTLLAKIEKYGL 471 >UniRef50_D1N7U7 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N7U7_9BACT Length = 462 Score = 66.8 bits (162), Expect = 2e-10, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 39/82 (47%), Gaps = 1/82 (1%) Query: 13 VSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRG 72 + + + + + + ++V+ +N + + E+ L++ + G Sbjct: 381 MVVLAREKILRKSDIPEAVRNH-ENPVPPGSAATAPEPEIETFENSERKLIEKALAECNG 439 Query: 73 NQTRAALMMGINRGTLRKKLKK 94 N+T+AA ++GI+R TL ++L + Sbjct: 440 NRTQAAKLLGISRRTLHRRLAE 461 >UniRef50_B5EFV3 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Geobacter RepID=B5EFV3_GEOBB Length = 482 Score = 66.8 bits (162), Expect = 2e-10, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 38/63 (60%) Query: 35 LKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKK 94 L+ F + ++ +YE V +E+ L+ M M+ + NQ AA ++GI+R TLR +L++ Sbjct: 416 LEPVFDGICQKNKGAIYESVNMGLEKALIHMAMEKSNNNQVFAAKLLGISRNTLRDRLER 475 Query: 95 YGM 97 Y + Sbjct: 476 YRI 478 >UniRef50_Q1ITP4 Two component, sigma54 specific, transcriptional regulator, Fis family n=8 Tax=Bacteria RepID=Q1ITP4_ACIBL Length = 485 Score = 66.8 bits (162), Expect = 2e-10, Method: Composition-based stats. Identities = 21/44 (47%), Positives = 30/44 (68%) Query: 54 VLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 L EVE+ ++M M+ GNQT AA ++ I+R LR KLKK+G+ Sbjct: 429 SLEEVERAFVEMAMKEANGNQTHAARLLDISRDALRYKLKKFGL 472 >UniRef50_Q24ZH2 Putative uncharacterized protein n=1 Tax=Desulfitobacterium hafniense Y51 RepID=Q24ZH2_DESHY Length = 659 Score = 66.8 bits (162), Expect = 2e-10, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 44/95 (46%), Gaps = 6/95 (6%) Query: 4 QRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLL 63 +++ + ++ ++ D + + L D + + ++L + L E+E + Sbjct: 570 RQLENSMVYAVSLTQGDVIGAEDLPDDITNPITPENSRLFSSV------MSLREMEITAI 623 Query: 64 DMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 ++ T N AA ++G+ + TL KKLK+Y + Sbjct: 624 KNALEQTNQNIANAANILGLGKSTLYKKLKEYHLE 658 >UniRef50_Q6MNL0 Putative uncharacterized protein n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MNL0_BDEBA Length = 144 Score = 66.4 bits (161), Expect = 3e-10, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 27/44 (61%) Query: 55 LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 + E+E ++ + +GN T AA +GI R TL +K+K+Y ++ Sbjct: 90 MEELEAHAIENAIVQYKGNLTEAAKALGIGRATLYRKVKQYHID 133 >UniRef50_Q2LXW1 Sigma-54 dependent transcription regulator n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LXW1_SYNAS Length = 450 Score = 66.4 bits (161), Expect = 3e-10, Method: Composition-based stats. Identities = 19/46 (41%), Positives = 32/46 (69%) Query: 52 ELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 L L EVE+ + ++ YT GN T +A ++GI+R TLR+K+++Y + Sbjct: 401 ALSLREVEREHILKILHYTNGNITSSAQILGISRPTLRQKIRQYKI 446 >UniRef50_C0QAK8 Putative nitrogen assimilation regulatory protein NtrC n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QAK8_DESAH Length = 455 Score = 66.4 bits (161), Expect = 3e-10, Method: Composition-based stats. Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 2/79 (2%) Query: 17 NSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTR 76 ++ L D V Q + A+ + +D+ L E+E+ ++ + T GN+T Sbjct: 373 DTDRIDVSDLLMDGVPQPADS--AEKDSGFPHDMALSPLREMEEKMIFHTLDKTEGNRTH 430 Query: 77 AALMMGINRGTLRKKLKKY 95 AA ++GI+ TLR KL +Y Sbjct: 431 AAKILGISVRTLRNKLNEY 449 >UniRef50_B9M8I4 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Geobacter RepID=B9M8I4_GEOSF Length = 455 Score = 66.4 bits (161), Expect = 3e-10, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 35/56 (62%) Query: 43 NGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 +GQ+ L L EVE+ + V+ Y R + RAA ++GI+R TL +++K+YG+ Sbjct: 395 DGQERFPLLLKPLHEVEREHIQNVLCYVRNEKKRAAEILGISRPTLDRRIKEYGLE 450 >UniRef50_C2W7W3 Transcriptional regulator n=4 Tax=Bacillus RepID=C2W7W3_BACCE Length = 617 Score = 66.4 bits (161), Expect = 3e-10, Method: Composition-based stats. Identities = 16/44 (36%), Positives = 31/44 (70%) Query: 54 VLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 V E E+ L++ V++ +GN+++AA ++GI+R TL KL ++ + Sbjct: 574 VRDEEERGLIERVLKEAKGNKSKAAALLGISRATLYNKLSRFKI 617 >UniRef50_B3WV21 Transcriptional regulatory protein ZraR (Fragment) n=1 Tax=Escherichia coli B171 RepID=B3WV21_ECOLX Length = 213 Score = 66.4 bits (161), Expect = 3e-10, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 2/67 (2%) Query: 33 QALKNYFAQLNGQDVNDL--YELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRK 90 L +Q + D+ Y+L +E+ + + T N+T AA +GI+R TL + Sbjct: 134 AHLPEEISQSFKSEKKDVLDYKLAKESIEKEFILKTLIETNWNKTEAAKKLGISRKTLWQ 193 Query: 91 KLKKYGM 97 KLKK+ + Sbjct: 194 KLKKFNL 200 >UniRef50_C1SIN5 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SIN5_9BACT Length = 431 Score = 66.4 bits (161), Expect = 3e-10, Method: Composition-based stats. Identities = 15/40 (37%), Positives = 27/40 (67%) Query: 59 EQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 E+ L+ ++ T GN+T+AA ++ I+R TL KLK++ + Sbjct: 391 ERDLIIKALKKTGGNKTKAAEILQISRRTLHNKLKEFDLE 430 >UniRef50_Q0A9V6 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0A9V6_ALHEH Length = 642 Score = 66.4 bits (161), Expect = 3e-10, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 31/68 (45%) Query: 30 SVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLR 89 V+ + + L LA VE+ ++ ++ GN +RAA +GI R TL Sbjct: 565 DVEALPEEILTPAPAPTPGEDGNLQLATVERAAIEQALRRCEGNVSRAARQLGIARSTLY 624 Query: 90 KKLKKYGM 97 ++++ + Sbjct: 625 CRIQEQHI 632 >UniRef50_B9XIA4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=bacterium Ellin514 RepID=B9XIA4_9BACT Length = 435 Score = 66.4 bits (161), Expect = 3e-10, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 11/89 (12%) Query: 21 QVTQKPLRDSVKQAL-----------KNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQY 69 + L++ V++A+ + D +L VE+ + +++ Sbjct: 346 PGNVRQLQNEVQRAVLLCEGKLVDAPDLSITAPANESTGDTSYTLLEGVERNTIVQMLKE 405 Query: 70 TRGNQTRAALMMGINRGTLRKKLKKYGMN 98 T GN+ A +GI R TL K+K YG+ Sbjct: 406 TGGNKLETAKRLGIGRQTLYNKIKAYGIE 434 >UniRef50_Q1D6H5 Sigma-54 dependent DNA-binding response regulator n=7 Tax=Myxococcales RepID=Q1D6H5_MYXXD Length = 474 Score = 66.4 bits (161), Expect = 3e-10, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 46/90 (51%), Gaps = 1/90 (1%) Query: 9 DVLTVSTVNSQ-DQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVM 67 ++T + Q T ++ A+ + + D+ + AE+E+ L+ + Sbjct: 371 PLITARDLPEPVRQGTGVQAGANLASAVASIDVPTGEVGLKDIVRMKAAELERDLIVKKL 430 Query: 68 QYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 + T GN TRAA ++ I+R +L+ K+K++G+ Sbjct: 431 EETGGNVTRAARLLQISRKSLQTKMKEFGL 460 >UniRef50_Q93QH0 Putative sigma 54 type regulator n=1 Tax=Brevibacterium sp. HCU RepID=Q93QH0_9MICO Length = 458 Score = 66.4 bits (161), Expect = 3e-10, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 29/46 (63%) Query: 52 ELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 ++ E+ L +Q GN+++AA ++G++R T+ +K+K+Y + Sbjct: 411 ATMIERAERHALLQALQQADGNRSQAAAILGVSRATIYRKIKQYKL 456 >UniRef50_B8FL05 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FL05_DESAA Length = 453 Score = 66.4 bits (161), Expect = 3e-10, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 14/91 (15%) Query: 21 QVTQKPLRDSVKQAL---------KNYFAQLNGQDVNDLYELV-----LAEVEQPLLDMV 66 + L +++++ L + Q Q DL L ++E+ + V Sbjct: 363 PGNVRELENTIERTLILKDDAVIKPEHLPQDIRQQPPDLRSFSDKMVSLKDLERDYIRFV 422 Query: 67 MQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 + T G +AA ++GINR TL K+KKYG+ Sbjct: 423 LSRTNGGIQKAAGILGINRKTLSMKMKKYGL 453 >UniRef50_Q0FYR2 Transcriptional Regulator, Fis family protein n=1 Tax=Fulvimarina pelagi HTCC2506 RepID=Q0FYR2_9RHIZ Length = 474 Score = 66.4 bits (161), Expect = 3e-10, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 41/82 (50%), Gaps = 3/82 (3%) Query: 19 QDQVTQKPLRDSVKQALK---NYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQT 75 +++ T P S + ++ + + + D+ +E+ ++ ++ T+ N+ Sbjct: 388 RNERTSSPANQSGRGEMRPANDMIGLVGQMPLRDIVRDTTDIIERLCIEAALELTQNNRA 447 Query: 76 RAALMMGINRGTLRKKLKKYGM 97 AA ++GI+R L KL+++G+ Sbjct: 448 SAAELLGISRQALYTKLRRFGI 469 >UniRef50_Q2JA15 Transcriptional regulator n=2 Tax=Actinomycetales RepID=Q2JA15_FRASC Length = 615 Score = 66.4 bits (161), Expect = 3e-10, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 8/86 (9%) Query: 21 QVTQKPLRDSVKQALKNY-FAQLNGQDVNDLYELV-------LAEVEQPLLDMVMQYTRG 72 LR++++ AL+ ++ QD+ + L E+ + +Q T G Sbjct: 529 PRNVSQLREALEHALRRRPVGEIQAQDLPAYCQTTSRHVLTPLEAAERDTIVAALQETEG 588 Query: 73 NQTRAALMMGINRGTLRKKLKKYGMN 98 N+ AA +G++R L +KLK YG+ Sbjct: 589 NRMLAATRLGMSRSGLYRKLKAYGIT 614 >UniRef50_Q1INE5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Acidobacteria RepID=Q1INE5_ACIBL Length = 459 Score = 66.4 bits (161), Expect = 3e-10, Method: Composition-based stats. Identities = 19/43 (44%), Positives = 28/43 (65%) Query: 54 VLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYG 96 L ++E+ + V+ T NQTRAA M+ I+R TL K+K+YG Sbjct: 407 TLEDIEKEHILHVLDETNWNQTRAAEMLDIDRVTLHHKIKRYG 449 >UniRef50_A8RIT6 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RIT6_9CLOT Length = 639 Score = 66.4 bits (161), Expect = 3e-10, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 49/95 (51%), Gaps = 5/95 (5%) Query: 3 EQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPL 62 E R ++ L V ++ ++++T +R+++ Q + Y+ + E+ Sbjct: 547 ELRNVTERLVVICMD-KEEITADDMREALHPEELPVKFQSTDMPIPPFYQ----DGEREF 601 Query: 63 LDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 L +++ + NQT A +GINR TL +++KK+G+ Sbjct: 602 LIRILEESNYNQTLTAEKLGINRTTLWRRMKKHGI 636 >UniRef50_C0QSE6 AAA family ATPase n=4 Tax=Hydrogenothermaceae RepID=C0QSE6_PERMH Length = 415 Score = 66.4 bits (161), Expect = 3e-10, Method: Composition-based stats. Identities = 14/39 (35%), Positives = 26/39 (66%) Query: 59 EQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 E+ + ++ + GN+ +AA M+GI+ TL +K+KKY + Sbjct: 372 EKERIKEALRKSSGNRKKAAEMLGISVTTLWRKMKKYNL 410 >UniRef50_B3Q7B9 Transcriptional regulator, Fis family n=9 Tax=Bradyrhizobiaceae RepID=B3Q7B9_RHOPT Length = 464 Score = 66.4 bits (161), Expect = 3e-10, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 45/88 (51%) Query: 11 LTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYT 70 + V N ++ D+++QAL QL + L + ++ VEQ + + + Sbjct: 356 IGVLMRNVARRLDAADDHDALRQALGPISKQLGRSSLRKLVKNAVSIVEQHYVKEALLRS 415 Query: 71 RGNQTRAALMMGINRGTLRKKLKKYGMN 98 +GN+T A ++G++R +L KL +YG + Sbjct: 416 KGNRTATAELLGLSRQSLYAKLNRYGFD 443 >UniRef50_Q06065 Acetoacetate metabolism regulatory protein atoC n=32 Tax=Proteobacteria RepID=ATOC_ECOLI Length = 461 Score = 66.4 bits (161), Expect = 3e-10, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 48/95 (50%) Query: 4 QRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLL 63 + +++ + +NS + + L ++Q + N + + VE+ ++ Sbjct: 363 RELSNVIERAVVMNSGPIIFSEDLPPQIRQPVCNAGEVKTAPVGERNLKEEIKRVEKRII 422 Query: 64 DMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 V++ GN+TR ALM+GI+R L KL++YG++ Sbjct: 423 MEVLEQQEGNRTRTALMLGISRRALMYKLQEYGID 457 >UniRef50_C1SGB7 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SGB7_9BACT Length = 473 Score = 66.4 bits (161), Expect = 3e-10, Method: Composition-based stats. Identities = 19/42 (45%), Positives = 29/42 (69%) Query: 54 VLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKY 95 +AE+E+ L+ ++ T GN+T+AA M+GI TLR KL +Y Sbjct: 420 TIAEMERELIIKTLKETGGNRTKAADMLGITVRTLRNKLNEY 461 >UniRef50_A6KY73 Putative two-component system response regulator n=9 Tax=Bacteroidales RepID=A6KY73_BACV8 Length = 437 Score = 66.4 bits (161), Expect = 3e-10, Method: Composition-based stats. Identities = 20/102 (19%), Positives = 49/102 (48%), Gaps = 12/102 (11%) Query: 8 SDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDL-----------YELVLA 56 ++ +S ++ + L + +++A+ + L +L + ++ Sbjct: 335 TEQAKISMLSHSWPGNVRELDNRIRRAVLLAVSPLLTHKDLNLNATICRTGEKCKKGLME 394 Query: 57 EVE-QPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 E E + L+ +++ G +R A M+G++R TL KK+++YG+ Sbjct: 395 EAEEKELIRKILEECGGKISRVARMLGMSRPTLYKKMERYGL 436 >UniRef50_Q9K633 Transcriptional regulator n=2 Tax=Bacillus RepID=Q9K633_BACHD Length = 559 Score = 66.0 bits (160), Expect = 3e-10, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 31/48 (64%) Query: 51 YELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 E V+ E E+ + ++ T N+T+AA ++ I+R +L +K+KK+ ++ Sbjct: 512 LEQVMEETEKEAILNALRVTNNNRTKAANLLQISRTSLYEKMKKHRLS 559 >UniRef50_A8MKV1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Alkaliphilus oremlandii OhILAs RepID=A8MKV1_ALKOO Length = 440 Score = 66.0 bits (160), Expect = 3e-10, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 31/52 (59%) Query: 46 DVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 N++ L L ++E+ + V++ T N+T AA ++ I TL +K+++Y + Sbjct: 387 SKNNMKSLALQDIEKEHICQVLEKTGWNKTEAAKILKIGLRTLYRKIEEYKL 438 >UniRef50_B4CU93 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CU93_9BACT Length = 465 Score = 66.0 bits (160), Expect = 3e-10, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 35/69 (50%) Query: 30 SVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLR 89 + + ++ A + N L L + E+ + + GN+ +AA ++GI+R TL Sbjct: 395 ELPREIQLPAALHEARAANAAASLNLEDQERQAILQALTQAHGNKKKAAAILGIHRPTLY 454 Query: 90 KKLKKYGMN 98 K+K +G+N Sbjct: 455 NKMKHHGIN 463 >UniRef50_B3E4E8 Putative sigma54 specific transcriptional regulator n=1 Tax=Geobacter lovleyi SZ RepID=B3E4E8_GEOLS Length = 408 Score = 66.0 bits (160), Expect = 3e-10, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 50/95 (52%), Gaps = 9/95 (9%) Query: 4 QRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLL 63 + +++++ + D +T L D ++Q + G+ +L + E+ L+ Sbjct: 323 RELDNEIERAVALAYGDTITMTDLSDPLQQ--QTTLPAAGGKS-------LLKDSEKQLI 373 Query: 64 DMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 + ++ +GN+T+AA +G++R LRKKLK+ GM Sbjct: 374 EQALKEAKGNKTQAAERLGMSREGLRKKLKRLGME 408 >UniRef50_Q471V5 Helix-turn-helix, Fis-type n=1 Tax=Ralstonia eutropha JMP134 RepID=Q471V5_RALEJ Length = 635 Score = 66.0 bits (160), Expect = 3e-10, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 1/68 (1%) Query: 28 RDSVKQALKNYFAQLNG-QDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRG 86 ++ A+ A G LA+VE +++ + GN+++AA +GI+R Sbjct: 562 ESWLESAVDTAVATAPGTATPTPRSPTRLADVESRMIERTLAELGGNRSQAAKALGISRA 621 Query: 87 TLRKKLKK 94 TL +KL + Sbjct: 622 TLYRKLAQ 629 >UniRef50_UPI0001C424D6 transcriptional regulator n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C424D6 Length = 567 Score = 66.0 bits (160), Expect = 3e-10, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 33/65 (50%) Query: 33 QALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKL 92 + L + + + + E+ L ++ T+GN+++AA ++GI+R T +KL Sbjct: 503 EHLPAKLTDTPSNHSVESLAVSIEKAEKTALMNALKQTKGNRSKAASLLGISRSTFYEKL 562 Query: 93 KKYGM 97 KY + Sbjct: 563 TKYQL 567 >UniRef50_C4XL32 NtrC family two-component response regulator n=4 Tax=Proteobacteria RepID=C4XL32_DESMR Length = 452 Score = 66.0 bits (160), Expect = 3e-10, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 40/68 (58%), Gaps = 2/68 (2%) Query: 30 SVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLR 89 + Q L L ++ +L + L E+E+ + ++ Y GN+TRAA ++GI+R +L Sbjct: 384 DLPQDLHGDAPALARREGPEL--IALEELERRHIRDILTYCDGNKTRAAEILGIDRVSLW 441 Query: 90 KKLKKYGM 97 +K+K+ G+ Sbjct: 442 RKVKRLGL 449 >UniRef50_B2RIU9 Two-component system response regulator n=38 Tax=Bacteria RepID=B2RIU9_PORG3 Length = 464 Score = 66.0 bits (160), Expect = 3e-10, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 40/70 (57%), Gaps = 2/70 (2%) Query: 28 RDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGT 87 R+ + + ++ +Q+ D +D E L ++E+ + + GN +RAA +G++R Sbjct: 397 REISARDVADFGSQVTAADHSD--ERALTDMEEAAIRETLTKYNGNVSRAARALGLSRAA 454 Query: 88 LRKKLKKYGM 97 L ++++KYG+ Sbjct: 455 LYRRMEKYGL 464 >UniRef50_B1ZR63 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZR63_OPITP Length = 490 Score = 66.0 bits (160), Expect = 3e-10, Method: Composition-based stats. Identities = 17/43 (39%), Positives = 29/43 (67%) Query: 55 LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97 L E+E+ + ++ T GN+T+AA +GI+ TLR KL++Y + Sbjct: 434 LDELEKQAIRAALRQTGGNRTQAAAELGISIRTLRNKLQEYRL 476 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.314 0.160 0.442 Lambda K H 0.267 0.0487 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 594,933,358 Number of Sequences: 3077464 Number of extensions: 24846332 Number of successful extensions: 96681 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 3388 Number of HSP's successfully gapped in prelim test: 325 Number of HSP's that attempted gapping in prelim test: 93016 Number of HSP's gapped (non-prelim): 3772 length of query: 98 length of database: 1,040,396,356 effective HSP length: 67 effective length of query: 31 effective length of database: 834,206,268 effective search space: 25860394308 effective search space used: 25860394308 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.2 bits) S2: 88 (38.3 bits)