BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (137 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P0ACG0 DNA-binding protein H-NS n=266 Tax=Gammaproteoba... 276 1e-73 UniRef50_Q5E4C0 Global DNA-binding transcriptional dual regulato... 139 3e-32 UniRef50_B2VB46 H-NS protein n=1 Tax=Erwinia tasmaniensis RepID=... 125 4e-28 UniRef50_Q65SY1 Hns protein n=2 Tax=Pasteurellaceae RepID=Q65SY1... 124 8e-28 UniRef50_P43841 DNA-binding protein H-NS homolog n=25 Tax=Gammap... 123 2e-27 UniRef50_P0A1S5 DNA-binding protein stpA n=131 Tax=Gammaproteoba... 123 2e-27 UniRef50_A4SUA6 Histone-like nucleoid structuring protein n=3 Ta... 112 3e-24 UniRef50_A6FD06 DNA-binding protein H-NS n=1 Tax=Moritella sp. P... 106 3e-22 UniRef50_A7FCL2 DNA-binding protein H-NS n=1 Tax=Yersinia pseudo... 105 5e-22 UniRef50_A7JSK3 DNA-binding protein H-NS n=2 Tax=Mannheimia haem... 103 1e-21 UniRef50_Q5QW35 Histone-like protein n=2 Tax=Idiomarina RepID=Q5... 102 3e-21 UniRef50_B0UTX9 Histone family protein nucleoid-structuring prot... 100 2e-20 UniRef50_Q6AQT8 Related to DNA-binding protein H-NS n=1 Tax=Desu... 97 1e-19 UniRef50_Q2NQ66 DNA-binding protein n=1 Tax=Sodalis glossinidius... 96 3e-19 UniRef50_B5EWF6 H-NS histone family n=2 Tax=Enterobacteriaceae R... 92 6e-18 UniRef50_B2TSE7 DNA-binding protein H-NS family n=5 Tax=Enteroba... 86 3e-16 UniRef50_B2VAY7 Heat-stable nucleoid-structuring protein n=1 Tax... 84 1e-15 UniRef50_Q2C8B2 Putative DNA-binding protein H-NS n=2 Tax=Photob... 84 1e-15 UniRef50_Q07ZH5 Histone family protein nucleoid-structuring prot... 80 2e-14 UniRef50_Q15TX2 Histone-like nucleoid-structuring protein H-NS n... 77 2e-13 UniRef50_UPI0000E0F9F2 DNA-binding protein, H-NS family n=1 Tax=... 74 1e-12 UniRef50_A2UW01 Histone-like nucleoid-structuring protein H-NS n... 69 5e-11 UniRef50_Q2BK75 DNA-binding protein Hns n=1 Tax=Neptuniibacter c... 67 2e-10 UniRef50_Q663D4 DNA-binding protein n=1 Tax=Yersinia pseudotuber... 66 3e-10 UniRef50_C7BHB8 Dna-binding protein h-ns (Histone-like protein h... 65 5e-10 UniRef50_Q70W58 DNA binding protein n=1 Tax=Yersinia enterocolit... 61 1e-08 UniRef50_A4NZJ0 Acetolactate synthase 3 catalytic subunit n=1 Ta... 56 3e-07 UniRef50_B1VJ65 HN-S family DNA-binding protein n=3 Tax=Enteroba... 55 5e-07 UniRef50_A9M4Q2 DNA-binding protein n=1 Tax=Vibrio sp. 23023 Rep... 52 4e-06 UniRef50_B4TM78 DNA binding protein n=2 Tax=Salmonella enterica ... 51 1e-05 UniRef50_Q0VT26 DNA-binding protein H-NS n=2 Tax=Alcanivorax Rep... 49 3e-05 UniRef50_C9Q4L7 Putative uncharacterized protein n=1 Tax=Vibrio ... 49 4e-05 UniRef50_B1LDK0 H-NS histone family protein n=5 Tax=Enterobacter... 47 1e-04 UniRef50_B8KVY0 H-NS histone family protein n=1 Tax=gamma proteo... 47 2e-04 UniRef50_UPI0001912B66 hypothetical protein Salmonellaentericaen... 46 4e-04 UniRef50_Q28U97 Trans-acting regulatory protein hvrA n=2 Tax=Jan... 46 4e-04 UniRef50_A5UCH6 Acetolactate synthase 3 catalytic subunit n=1 Ta... 45 9e-04 UniRef50_B9NXM2 Trans-acting regulatory protein HvrA n=1 Tax=Rho... 42 0.008 UniRef50_A6VTC1 Histone family protein nucleoid-structuring prot... 41 0.010 UniRef50_Q1QIY6 Histone-like nucleoid-structuring protein H-NS n... 41 0.011 UniRef50_A1B6U3 Histone family protein nucleoid-structuring prot... 41 0.013 UniRef50_A3SJ27 DNA-binding protein, H-NS family protein n=1 Tax... 40 0.019 UniRef50_A1VWC2 Nucleoid protein H-NS n=2 Tax=Polaromonas naphth... 40 0.019 UniRef50_UPI00016A8021 histone family protein nucleoid-structuri... 40 0.020 UniRef50_B5J712 H-NS histone family n=1 Tax=Octadecabacter antar... 40 0.027 UniRef50_Q46693 KorB protein n=6 Tax=root RepID=Q46693_ECOLX 40 0.031 UniRef50_B7USZ2 H-NS-like DNA-binding protein n=8 Tax=Enterobact... 39 0.035 UniRef50_Q84IJ5 DNA-binding protein n=1 Tax=Janthinobacterium sp... 39 0.036 UniRef50_C6BPP4 Histone family protein nucleoid-structuring prot... 38 0.077 UniRef50_B1KCC1 Histone family protein nucleoid-structuring prot... 38 0.079 >UniRef50_P0ACG0 DNA-binding protein H-NS n=266 Tax=Gammaproteobacteria RepID=HNS_ECO57 Length = 137 Score = 276 bits (707), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 137/137 (100%), Positives = 137/137 (100%) Query: 1 MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQ 60 MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQ Sbjct: 1 MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQ 60 Query: 61 YREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIK 120 YREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIK Sbjct: 61 YREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIK 120 Query: 121 KAMDEQGKSLDDFLIKQ 137 KAMDEQGKSLDDFLIKQ Sbjct: 121 KAMDEQGKSLDDFLIKQ 137 >UniRef50_Q5E4C0 Global DNA-binding transcriptional dual regulator H-NS n=5 Tax=Gammaproteobacteria RepID=Q5E4C0_VIBF1 Length = 173 Score = 139 bits (349), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 70/135 (51%), Positives = 98/135 (72%), Gaps = 1/135 (0%) Query: 1 MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQ 60 MS+ +K L N+R+LRA +RE TLE LEE LEKL+ VV ER+E E+ A++ E+ KL++ Sbjct: 40 MSDTIKTLLNLRSLRALSREMTLEQLEEALEKLQSVVAERQESEAEERAQLAEKQAKLEE 99 Query: 61 YREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIK 120 +R+M+I GI P +LL++++A TK KRA RPAKY + D GE KTWTGQGRTP+ ++ Sbjct: 100 FRQMMIDSGIAPEDLLDTMSATTVKTKQKRAPRPAKYKFQDHAGEEKTWTGQGRTPSALQ 159 Query: 121 KAMDEQGKSLDDFLI 135 +D GK L++FLI Sbjct: 160 AQLD-AGKKLEEFLI 173 >UniRef50_B2VB46 H-NS protein n=1 Tax=Erwinia tasmaniensis RepID=B2VB46_ERWT9 Length = 136 Score = 125 bits (314), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 66/128 (51%), Positives = 85/128 (66%), Gaps = 3/128 (2%) Query: 8 LNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIA 67 LN IR +RA ARE E +EE+ EKL +V++ R+E A A++ ER KL++YREML+ Sbjct: 12 LNKIRVMRAAAREMPYEMMEEIREKLNAIVDDLRDEHQARASQESERLEKLEKYREMLLQ 71 Query: 68 DGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQG 127 DGIDP +L +S K KA RA RPAKY Y D +G KTWTGQGRTP + A+ G Sbjct: 72 DGIDPADLADSELPRKQ--KASRAPRPAKYRYTDTDGSEKTWTGQGRTPLAMANAL-AAG 128 Query: 128 KSLDDFLI 135 K ++DFLI Sbjct: 129 KKIEDFLI 136 >UniRef50_Q65SY1 Hns protein n=2 Tax=Pasteurellaceae RepID=Q65SY1_MANSM Length = 134 Score = 124 bits (312), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 65/135 (48%), Positives = 90/135 (66%), Gaps = 1/135 (0%) Query: 1 MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQ 60 M+E +K LNN+R LR+ A+E ++E LE ++EK ++V+ E++ EE EER +L++ Sbjct: 1 MNEVIKTLNNLRRLRSMAKELSIEQLENIIEKFQLVIEEKKAEELEIKRLEEERKNRLEK 60 Query: 61 YREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIK 120 YRE+L DGI +EL LA + KAKRA AKY Y++ENGE KTWTGQGR P I+ Sbjct: 61 YRELLKEDGITADELAQILAGKNNTAKAKRAPLSAKYKYINENGEQKTWTGQGRMPKAIQ 120 Query: 121 KAMDEQGKSLDDFLI 135 ++ GKSL DF I Sbjct: 121 LQLN-AGKSLSDFAI 134 >UniRef50_P43841 DNA-binding protein H-NS homolog n=25 Tax=Gammaproteobacteria RepID=HNS_HAEIN Length = 134 Score = 123 bits (309), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 64/135 (47%), Positives = 87/135 (64%), Gaps = 1/135 (0%) Query: 1 MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQ 60 M+E ++ L N+R+LRA RE TLE E LEKL+ + E+R E+ ER +L + Sbjct: 1 MNELVRGLTNLRSLRAAVRELTLEQAENALEKLQTAIEEKRANEAELIKAETERKERLAK 60 Query: 61 YREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIK 120 Y+E++ +GI P EL +AKRA RPAKY+++DENGE KTWTGQGRTP I+ Sbjct: 61 YKELMEKEGITPEELHEIFGTKTVSIRAKRAPRPAKYAFIDENGEHKTWTGQGRTPRPIQ 120 Query: 121 KAMDEQGKSLDDFLI 135 A++ +GKSL DF I Sbjct: 121 NALN-KGKSLSDFEI 134 >UniRef50_P0A1S5 DNA-binding protein stpA n=131 Tax=Gammaproteobacteria RepID=STPA_SALTI Length = 133 Score = 123 bits (308), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 73/135 (54%), Positives = 91/135 (67%), Gaps = 2/135 (1%) Query: 1 MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQ 60 M+ L+ LNNIRTLRA ARE +++ LEEMLEK VV ERREEE ++ E+ K+ Sbjct: 1 MNLMLQNLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEELQQRQLAEKQEKINA 60 Query: 61 YREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIK 120 + E++ ADGI+P EL +A+ K KR RPAKY + D NGE KTWTGQGRTP I Sbjct: 61 FLELMKADGINPEELFAMDSAMPRSAK-KRQPRPAKYRFTDFNGEEKTWTGQGRTPKPIA 119 Query: 121 KAMDEQGKSLDDFLI 135 +A+ GKSLDDFLI Sbjct: 120 QAL-AAGKSLDDFLI 133 >UniRef50_A4SUA6 Histone-like nucleoid structuring protein n=3 Tax=Aeromonas salmonicida subsp. salmonicida RepID=A4SUA6_AERS4 Length = 136 Score = 112 bits (281), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 66/139 (47%), Positives = 93/139 (66%), Gaps = 7/139 (5%) Query: 1 MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNER-REEESAAAAEVEERTRKLQ 59 M++ LK+L NIR+LRA R+ E L+E+ EK + VV E+ + E+ AA++E + +KL Sbjct: 1 MNDFLKVLLNIRSLRAAVRDLPFEQLQEIKEKFDTVVQEQLKAAETDQAAKLEHQ-KKLA 59 Query: 60 QYREMLIADGIDPNELLNS---LAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTP 116 ++RE+L +G+ P +LL+ A +G KAKRA RPAKY Y+ E GE +TWTGQGR P Sbjct: 60 EFRELLAIEGLSPEDLLSGRGLTAWADAGAKAKRAPRPAKYRYLVE-GEARTWTGQGRMP 118 Query: 117 AVIKKAMDEQGKSLDDFLI 135 A I A+ G+SLD FLI Sbjct: 119 AQIAAAI-ASGESLDAFLI 136 >UniRef50_A6FD06 DNA-binding protein H-NS n=1 Tax=Moritella sp. PE36 RepID=A6FD06_9GAMM Length = 135 Score = 106 bits (264), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 63/140 (45%), Positives = 93/140 (66%), Gaps = 10/140 (7%) Query: 1 MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQ 60 M++ +KI N R+LRA +E ++E LEE+L K +V++R+E A AAE+E++ K + Sbjct: 1 MNDFIKIFLNARSLRAATKELSVEQLEEVLIKFTTIVDDRKE---ANAAELEKQQAKQAK 57 Query: 61 YREMLIA---DGIDPNEL--LNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRT 115 E+L+ +GI P EL L A K+ K KR RPAKY+Y D NGETKTWTGQGR Sbjct: 58 MNEILLQLKENGISPEELMGLTDSTAEKTKNKTKRGPRPAKYAY-DFNGETKTWTGQGRM 116 Query: 116 PAVIKKAMDEQGKSLDDFLI 135 P +++ M+E+G S++++LI Sbjct: 117 PLPLQEVMNEKG-SIEEYLI 135 >UniRef50_A7FCL2 DNA-binding protein H-NS n=1 Tax=Yersinia pseudotuberculosis IP 31758 RepID=A7FCL2_YERP3 Length = 141 Score = 105 bits (261), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 62/140 (44%), Positives = 89/140 (63%), Gaps = 3/140 (2%) Query: 1 MSE-ALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQ 59 MSE LK++NN+R+LRA A+E +++L E EKL V+ ER +EE A E ++ L+ Sbjct: 1 MSEDTLKLINNLRSLRAFAKELDIDSLREFQEKLNTVIQEREKEEEEAKQEELKKRETLE 60 Query: 60 QYREMLIADGIDPNELLNSLAAVKSGTKAK--RAQRPAKYSYVDENGETKTWTGQGRTPA 117 ++R + GI+P E+ N L K+ K K R +R KY Y+D NGE + WTGQGR P Sbjct: 61 RFRNQITEAGINPEEVANFLTNTKTVNKVKSVRKKRTPKYEYLDSNGEVRQWTGQGRHPQ 120 Query: 118 VIKKAMDEQGKSLDDFLIKQ 137 I +A+ +GK L+DFLIK+ Sbjct: 121 PISEAIKNEGKKLEDFLIKK 140 >UniRef50_A7JSK3 DNA-binding protein H-NS n=2 Tax=Mannheimia haemolytica RepID=A7JSK3_PASHA Length = 133 Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 61/132 (46%), Positives = 83/132 (62%), Gaps = 1/132 (0%) Query: 4 ALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYRE 63 ALK L NIR+LRA A++ LE L+ + EKL++++ E+ EE E ++ L +YRE Sbjct: 3 ALKSLLNIRSLRALAKDLALEQLKSISEKLDIIIAEKEEEMKQEELEKLKQLESLNKYRE 62 Query: 64 MLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAM 123 ML DG+ +EL LA T+ + RPAKY +VD NG KTWTGQGRTP ++ A+ Sbjct: 63 MLKQDGLSIDELAELLADKVIKTRKALSPRPAKYKFVDANGNEKTWTGQGRTPKALQDAL 122 Query: 124 DEQGKSLDDFLI 135 D GK L+DF I Sbjct: 123 D-SGKKLEDFAI 133 >UniRef50_Q5QW35 Histone-like protein n=2 Tax=Idiomarina RepID=Q5QW35_IDILO Length = 138 Score = 102 bits (255), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 58/140 (41%), Positives = 88/140 (62%), Gaps = 6/140 (4%) Query: 1 MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQ 60 MSE + IL + R L+A +E L LE + K + V+++RREEE+ + E + +K+++ Sbjct: 1 MSEFINILRHERRLKAALKELDLNELESVKSKFDSVISQRREEEAEKQRQNEAKQKKIEE 60 Query: 61 YREMLIADGIDPNELL----NSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTP 116 ++ + GI+ +++L VK+ T+ KRA +P KY Y DENGE +TWTGQGR P Sbjct: 61 FKSAMADAGIELSDILEQELGGEPIVKT-TRKKRAPKPPKYEYTDENGEKQTWTGQGRMP 119 Query: 117 AVIKKAMDEQGKSLDDFLIK 136 +K A+D GKSL+ FLIK Sbjct: 120 KAMKTAVD-NGKSLEAFLIK 138 >UniRef50_B0UTX9 Histone family protein nucleoid-structuring protein H-NS n=2 Tax=Histophilus somni RepID=B0UTX9_HAES2 Length = 134 Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 53/135 (39%), Positives = 81/135 (60%), Gaps = 1/135 (0%) Query: 1 MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQ 60 MS+ LK L +IR LR +E TL+ LE +LEK +++ NERR+ + +ER ++ + Sbjct: 1 MSDLLKTLTSIRALRVATKEFTLQELESILEKFQLITNERRQLIEENQRKEQERLERIAK 60 Query: 61 YREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIK 120 Y+ +L DG+ +L++ + K A R AKY Y D+NG+ KTWTGQGR P ++ Sbjct: 61 YKALLAQDGLTLTDLVDDPTFTTKRPRKKIAPRKAKYQYTDQNGKVKTWTGQGRMPLSLQ 120 Query: 121 KAMDEQGKSLDDFLI 135 ++ GK+L DF I Sbjct: 121 AELNT-GKTLADFEI 134 >UniRef50_Q6AQT8 Related to DNA-binding protein H-NS n=1 Tax=Desulfotalea psychrophila RepID=Q6AQT8_DESPS Length = 143 Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 53/135 (39%), Positives = 79/135 (58%), Gaps = 3/135 (2%) Query: 1 MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQ 60 MS LK N+R+L A R+ ++E LE L+KL +V +R+E A +E + K+++ Sbjct: 10 MSSFLKTFLNVRSLNAATRDLSIEQLESTLQKLGKIVEDRKEVVLAGEKLLEAKLAKMKE 69 Query: 61 YREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIK 120 +++++ DGIDP E + K K + P KY Y+D E KTW+G GRTP VIK Sbjct: 70 FKDLMEEDGIDPFEFAELCST--GNVKQKNSPLPPKYEYMD-GAELKTWSGYGRTPEVIK 126 Query: 121 KAMDEQGKSLDDFLI 135 A+ +GKS + FLI Sbjct: 127 NAIKNEGKSKESFLI 141 >UniRef50_Q2NQ66 DNA-binding protein n=1 Tax=Sodalis glossinidius str. 'morsitans' RepID=Q2NQ66_SODGM Length = 144 Score = 95.9 bits (237), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 57/134 (42%), Positives = 83/134 (61%), Gaps = 3/134 (2%) Query: 2 SEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQY 61 E ++L+NIR+ RA ARE E L+EM EKL V+ ERR + AAE R K ++ Sbjct: 8 GEIRRVLSNIRSTRAFARETNFELLKEMHEKLGAVIEERRTDAEKEAAERALREEKRKEI 67 Query: 62 REMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKK 121 +++ +G ELL + S ++K+ + PAKY +V ENGETKTWTG+GR P I + Sbjct: 68 LQLIEGEGFTAEELLGDDVNI-SKKRSKKPKAPAKYEFV-ENGETKTWTGKGRKPKPIAE 125 Query: 122 AMDEQGKSLDDFLI 135 A+ G++L++FLI Sbjct: 126 ALS-AGRTLEEFLI 138 >UniRef50_B5EWF6 H-NS histone family n=2 Tax=Enterobacteriaceae RepID=B5EWF6_SALA4 Length = 141 Score = 91.7 bits (226), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 57/132 (43%), Positives = 80/132 (60%), Gaps = 6/132 (4%) Query: 6 KILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREML 65 K+L+NIR+LRA ARE E L++M +K VV E RE+ A E E+R + ++ EM+ Sbjct: 9 KVLSNIRSLRAFAREVDFELLKDMAQKFNAVVEELREDAEREAKEREQRDARKRELLEMI 68 Query: 66 IADGIDPNELLNSLAAVKSGTKAKRA--QRPAKYSYVDENGETKTWTGQGRTPAVIKKAM 123 ++G EL A+ T+ KR Q PAKY + + NGE + WTG+GR P I++A+ Sbjct: 69 ASEGFSVEELTG--ASDTGSTRKKRVVQQVPAKYQF-EVNGEMQYWTGRGRKPKAIEEAI 125 Query: 124 DEQGKSLDDFLI 135 GK LDDFLI Sbjct: 126 -AAGKKLDDFLI 136 >UniRef50_B2TSE7 DNA-binding protein H-NS family n=5 Tax=Enterobacteriaceae RepID=B2TSE7_SHIB3 Length = 154 Score = 86.3 bits (212), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 62/132 (46%), Positives = 81/132 (61%), Gaps = 3/132 (2%) Query: 6 KILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREML 65 + + NIR+LR ARE E L EM +KL VVV ERREE A E +E K QQ E + Sbjct: 15 RTMMNIRSLRVFAREVDFEQLLEMQDKLNVVVEERREEAEREAVERQELEAKRQQAIEYI 74 Query: 66 IADGIDPNELLNSLAA--VKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAM 123 I+ G+DP LL + A VK+ KAK R AKY + DENGE + W+G G+ P ++K + Sbjct: 75 ISLGLDPESLLAPVTADTVKTRRKAKGGVRKAKYRFKDENGEIREWSGNGKRPLALQKLL 134 Query: 124 DEQGKSLDDFLI 135 DE G ++DFLI Sbjct: 135 DE-GHFMEDFLI 145 >UniRef50_B2VAY7 Heat-stable nucleoid-structuring protein n=1 Tax=Erwinia tasmaniensis RepID=B2VAY7_ERWT9 Length = 145 Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 46/129 (35%), Positives = 71/129 (55%), Gaps = 1/129 (0%) Query: 7 ILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLI 66 +L+NIR+LRA ARE E L + +EK+ V+ ER +E ++ L++ ++ ++ Sbjct: 13 VLSNIRSLRAYAREVDFEFLRDAVEKIHSVLAEREDEYKEEQRRKQDEVENLEKVKKYMV 72 Query: 67 ADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQ 126 G+DP L S + K K R P KY D +G T W+G+G+ PA K A+D Sbjct: 73 ELGLDPALLTPSSVSPKRSGKNYRPVVPPKYRIKDTDGNTHEWSGRGKPPAAFKAALD-A 131 Query: 127 GKSLDDFLI 135 G++ DD LI Sbjct: 132 GRNKDDLLI 140 >UniRef50_Q2C8B2 Putative DNA-binding protein H-NS n=2 Tax=Photobacterium RepID=Q2C8B2_9GAMM Length = 130 Score = 84.0 bits (206), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 69/131 (52%), Positives = 90/131 (68%), Gaps = 2/131 (1%) Query: 5 LKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREM 64 + IL N+R+LRAQARE ++ L+E L+K VV ERREEE AA A +E+ KLQ+YR+M Sbjct: 2 IDILLNLRSLRAQAREMSVVDLQEGLQKFTQVVEERREEEEAANAVNKEQEAKLQKYRDM 61 Query: 65 LIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMD 124 L A+GI EL+ +L K KRA RPAKY++ DENGE KTWTGQGRTP +++ +D Sbjct: 62 LEAEGITAEELV-ALLGDAPKAKKKRAARPAKYTFSDENGEEKTWTGQGRTPKALQQLLD 120 Query: 125 EQGKSLDDFLI 135 G L +F I Sbjct: 121 -NGAQLSEFEI 130 >UniRef50_Q07ZH5 Histone family protein nucleoid-structuring protein H-NS n=21 Tax=Shewanella RepID=Q07ZH5_SHEFN Length = 136 Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 50/135 (37%), Positives = 76/135 (56%), Gaps = 3/135 (2%) Query: 1 MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQ 60 MS+ L IL + R +A +E +L+ L E KLE ++ ER+EEE ER ++ + Sbjct: 1 MSDFLDILTHGRRFKAAVKELSLDDLRETAAKLEKIITERQEEEKLELEANAERNARIAE 60 Query: 61 YREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIK 120 + G+ +L + ++VK+ K KRA RP KY + +GE WTGQGR P V K Sbjct: 61 ILAQIENSGLSIEDLGDVTSSVKTA-KTKRAPRPPKYQ-ITVDGELIQWTGQGRMPTVFK 118 Query: 121 KAMDEQGKSLDDFLI 135 + +D GK++ +FLI Sbjct: 119 QQVD-SGKNMSEFLI 132 >UniRef50_Q15TX2 Histone-like nucleoid-structuring protein H-NS n=4 Tax=Alteromonadales RepID=Q15TX2_PSEA6 Length = 133 Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 48/135 (35%), Positives = 72/135 (53%), Gaps = 3/135 (2%) Query: 1 MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQ 60 MS+ + IL + R L+ +E ++E LE + +KL +++ R+ +E +E+ KL + Sbjct: 1 MSDFISILTHGRRLQGAVKELSVEELETVADKLNSIIDNRKAKELEQQEAAKEKNEKLNE 60 Query: 61 YREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIK 120 L A G+D N+L + A KS K+ RP KY D G WTG GR P V K Sbjct: 61 ILAQLEAAGLDVNDLQKAEPAKKSTKVGKK--RPVKYILKDSAGNEHKWTGIGRMPKVFK 118 Query: 121 KAMDEQGKSLDDFLI 135 +D GKSLD +L+ Sbjct: 119 AELD-NGKSLDSYLL 132 >UniRef50_UPI0000E0F9F2 DNA-binding protein, H-NS family n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=UPI0000E0F9F2 Length = 134 Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 49/137 (35%), Positives = 80/137 (58%), Gaps = 5/137 (3%) Query: 1 MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQ 60 MS+ IL + R L+ +E +LE L++ EKL VV +R E ++A A E+ +++ Sbjct: 1 MSDFTAILLHTRRLQGATKELSLEELKDAQEKLASVVEKRVELQAAEEASKAEKAAQIEA 60 Query: 61 YREMLIADGIDPNELLNSLAAVKSGTKAKR--AQRPAKYSYVDENGETKTWTGQGRTPAV 118 ++ ++A G+D ++ +L KS TK++R A+RP KYS + +G WTG GR P V Sbjct: 61 IKQQMLAAGLDISDFAPNLETSKS-TKSRRRGAKRPIKYS-ISVDGVRTDWTGIGRMPVV 118 Query: 119 IKKAMDEQGKSLDDFLI 135 +A+ GK L+DF + Sbjct: 119 FSEALS-SGKQLEDFSV 134 >UniRef50_A2UW01 Histone-like nucleoid-structuring protein H-NS n=1 Tax=Shewanella putrefaciens 200 RepID=A2UW01_SHEPU Length = 133 Score = 68.6 bits (166), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 44/136 (32%), Positives = 76/136 (55%), Gaps = 8/136 (5%) Query: 1 MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQ 60 ++E IL + R +A +E T + L E+ EKL +V +R+ + A + + + +++Q Sbjct: 6 ITEFQSILLHARRFKASVKELTTQQLIEVQEKLNAIVEDRKAADEALKEQEQAKLAQIEQ 65 Query: 61 YREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIK 120 + ++ G+ ++L ++ K +R +P KY+ + +GE TWTGQGR P IK Sbjct: 66 LKSLIEEAGLSLDDLSST------PIKRERQPKPPKYA-ITVDGEQVTWTGQGRMPKPIK 118 Query: 121 KAMDEQGKSLDDFLIK 136 A+D G SL+ FLIK Sbjct: 119 AAID-NGASLESFLIK 133 >UniRef50_Q2BK75 DNA-binding protein Hns n=1 Tax=Neptuniibacter caesariensis RepID=Q2BK75_9GAMM Length = 130 Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 44/135 (32%), Positives = 74/135 (54%), Gaps = 5/135 (3%) Query: 1 MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQ 60 MS+ LKIL +LR Q + ++ LE+++ L V+ ++R EE A A +E+ K++ Sbjct: 1 MSDFLKILTRKNSLRKQCHDLSVAELEKVISDLTVITEDKRAEEEAVLAAEQEKAAKIES 60 Query: 61 YREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIK 120 R+ + G+D N+L++ + T A + + KY VD+ G W+G+GRTP + Sbjct: 61 IRQSMQDAGVDINDLMSLIGE----TAAPKKKVQPKYRIVDDEGNEHEWSGRGRTPLAFQ 116 Query: 121 KAMDEQGKSLDDFLI 135 D +G + DD LI Sbjct: 117 AYFD-KGFTKDDCLI 130 >UniRef50_Q663D4 DNA-binding protein n=1 Tax=Yersinia pseudotuberculosis RepID=Q663D4_YERPS Length = 137 Score = 65.9 bits (159), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 50/134 (37%), Positives = 71/134 (52%), Gaps = 5/134 (3%) Query: 2 SEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQY 61 +E +IL NIRT+R RE L E EKL V + ER+ E E+ ++ K ++ Sbjct: 6 AEVKRILANIRTIRTFVREVDYLFLVEAHEKLGVALEERKAEFECEQEELNKKEAKKKEL 65 Query: 62 REMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKK 121 + ++G E LN K K R KY++ +ENGE K W+G GR P I+ Sbjct: 66 LAFIASEGFTLEE-LNGNGITKR--KKPPVHRKPKYTF-EENGEMKVWSGVGRKPKPIEV 121 Query: 122 AMDEQGKSLDDFLI 135 A++E GK+L DFLI Sbjct: 122 ALNE-GKTLSDFLI 134 >UniRef50_C7BHB8 Dna-binding protein h-ns (Histone-like protein hlp-ii) (Protein h1 (Protein b1)) n=2 Tax=Photorhabdus RepID=C7BHB8_PHOAA Length = 148 Score = 65.5 bits (158), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 43/133 (32%), Positives = 77/133 (57%), Gaps = 8/133 (6%) Query: 8 LNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIA 67 L+ I +LR A+ +E LE++ + LE+VV E +E + E E++ +K + +M+ Sbjct: 17 LSRITSLRKFAQTKDVEWLEDVYKTLEIVVQESKETFRLMSLEAEQKEQKRLEILKMIEE 76 Query: 68 DGIDPNEL-----LNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKA 122 G++ N + L+ KS + + ++P KY + +ENGE K W+G G+ P ++K Sbjct: 77 IGLNINTINTPITLSDFKPKKSNARKGKTRKP-KYQF-NENGEIKYWSGNGKKPLGLQKL 134 Query: 123 MDEQGKSLDDFLI 135 ++E G SL++FLI Sbjct: 135 LNE-GHSLNEFLI 146 >UniRef50_Q70W58 DNA binding protein n=1 Tax=Yersinia enterocolitica RepID=Q70W58_YEREN Length = 147 Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 37/128 (28%), Positives = 71/128 (55%), Gaps = 8/128 (6%) Query: 8 LNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIA 67 L++ R ++ + C L ++ KL++ ++E ++ ++ R K + ++++ Sbjct: 13 LSSGRNMKQFIKRCDYGLLIDLQNKLDIHISEWAAQQEKEQEAIQLRNEKRSELLALIVS 72 Query: 68 DGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQG 127 +G P EL+ ++AA+K+ R++R KY Y D G K W+G GR P I++ ++ G Sbjct: 73 EGFSPEELI-TVAAIKT-----RSRRRMKYQYRD-GGAIKKWSGVGRVPRSIQERLNS-G 124 Query: 128 KSLDDFLI 135 +LDDFLI Sbjct: 125 ATLDDFLI 132 >UniRef50_A4NZJ0 Acetolactate synthase 3 catalytic subunit n=1 Tax=Haemophilus influenzae 22.4-21 RepID=A4NZJ0_HAEIN Length = 100 Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 34/96 (35%), Positives = 50/96 (52%) Query: 1 MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQ 60 M+E ++ L N+R+LRA RE TLE E LEKL+ + E+R E+ ER +L + Sbjct: 1 MNELVRGLTNLRSLRAAVRELTLEQAENALEKLQTAIEEKRANEAELIKAETERKERLAK 60 Query: 61 YREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAK 96 Y+E++ +GI P EL +K P K Sbjct: 61 YKELMEKEGITPEELHEIFGTKNCINSSKTCSTPCK 96 >UniRef50_B1VJ65 HN-S family DNA-binding protein n=3 Tax=Enterobacteriaceae RepID=B1VJ65_PROMH Length = 171 Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 50/134 (37%), Positives = 68/134 (50%), Gaps = 10/134 (7%) Query: 8 LNNIRTLRAQARECTLETLEEMLEKLEVVVNERREE---ESAAAAEVEERTRKLQQYREM 64 L + LR A+ E LE + +L +V E+REE AE+EE+ K +Y E Sbjct: 17 LTGLTELRKFAKTKNFEWLENLANQLNGIVEEQREEFELRKLELAELEEKRLKAIKYLEE 76 Query: 65 LIADGIDPNELLNSLAAV--KSGTKAKRAQRPAKYSYVD-ENGETKTWTGQGRTPAVIKK 121 L G+DP + S+ K G K K PAKY + E G+T TWTG GR ++ Sbjct: 77 L---GLDPETIHISVFETTDKKGKKRKSKNTPAKYRFTHPETGKTDTWTGIGRMKKGLQL 133 Query: 122 AMDEQGKSLDDFLI 135 +D G SLD+FLI Sbjct: 134 LID-AGHSLDEFLI 146 >UniRef50_A9M4Q2 DNA-binding protein n=1 Tax=Vibrio sp. 23023 RepID=A9M4Q2_9VIBR Length = 135 Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 40/140 (28%), Positives = 73/140 (52%), Gaps = 14/140 (10%) Query: 1 MSEALKILNNIRTLRAQARECTLETLEEMLEKL-EVVVNERREEESAAAAEVEERTRKLQ 59 M++ +K L R +A + +E L+ +L + E+ + + E + A E +ER + L+ Sbjct: 1 MTDIIKQLTQPRRAKALFKHTNIEQLDRILNIITEIKIEKEHEAQKQAEHEQQER-QALE 59 Query: 60 QYREMLIADGIDPNELLNSL-----AAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGR 114 + RE ++ G+D ++L++ + A + T K Q+ +Y G+ KTW G+G Sbjct: 60 EMREEILNKGLDFDKLVSLMKPQRKAKKRKSTGTKDTQKTYRY------GDNKTWNGEGN 113 Query: 115 TPAVIKKAMDEQGKSLDDFL 134 P ++K +DE G L DFL Sbjct: 114 VPEEMQKMLDE-GLELADFL 132 >UniRef50_B4TM78 DNA binding protein n=2 Tax=Salmonella enterica subsp. enterica serovar Schwarzengrund RepID=B4TM78_SALSV Length = 130 Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/128 (32%), Positives = 63/128 (49%), Gaps = 8/128 (6%) Query: 8 LNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIA 67 L + R L+ RE LE + ++ ++E+R E +R K + ++ + Sbjct: 8 LTSERALKKFLRESDFAFLEMLSARISAALDEKRAEHIEQEKLRRQREEKRNELLALIES 67 Query: 68 DGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQG 127 +G P EL V + K A+R AKY Y ENG K W+G GR P VI++ +D G Sbjct: 68 EGFSPTEL------VSTTPAKKSAKRKAKYQYF-ENGVHKKWSGVGRVPVVIQQELD-AG 119 Query: 128 KSLDDFLI 135 K L+ FLI Sbjct: 120 KPLESFLI 127 >UniRef50_Q0VT26 DNA-binding protein H-NS n=2 Tax=Alcanivorax RepID=Q0VT26_ALCBS Length = 118 Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 16/122 (13%) Query: 20 ECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSL 79 + +++ LE+++++ E ++++R+ E A V E+ M G+ P +LL S Sbjct: 7 QLSVDELEKLIKQAESALDKKRKAELKNAQAVLEK---------MAKNLGVAPQDLLKSS 57 Query: 80 AAVKSGTKAKRAQ------RPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDF 133 K T+ A+ RPAK + D N TWTG+G+ P ++ A+ +G L+DF Sbjct: 58 TEKKKTTRKNAAKKKTGVRRPAKVKFRDPNNSGNTWTGRGKRPLWLQDAL-SKGAKLEDF 116 Query: 134 LI 135 + Sbjct: 117 AV 118 >UniRef50_C9Q4L7 Putative uncharacterized protein n=1 Tax=Vibrio sp. RC341 RepID=C9Q4L7_9VIBR Length = 283 Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 40/143 (27%), Positives = 74/143 (51%), Gaps = 19/143 (13%) Query: 1 MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRK-LQ 59 M++ LK L++ R + + +++ + ++ L+ + NE+ E E+ AAE+EER R+ L+ Sbjct: 148 MTDILKSLSSPRRAKTMFKNASVDQVNLIINTLQNLRNEK-ELEAKMAAEIEERERQELE 206 Query: 60 QYREMLIADGIDPNELLNSLAAV--------KSGTKAKRAQRPAKYSYVDENGETKTWTG 111 R ++ ID + L+A+ K+ +K + A Y+Y G+ + W G Sbjct: 207 ALRAQILEKNID----FSKLSALMGENKKPRKNSSKRTSPKPSATYAY----GDNEVWDG 258 Query: 112 QGRTPAVIKKAMDEQGKSLDDFL 134 G PA ++ +DE G L DF+ Sbjct: 259 VGEVPAALQSLLDE-GFELSDFV 280 >UniRef50_B1LDK0 H-NS histone family protein n=5 Tax=Enterobacteriaceae RepID=B1LDK0_ECOSM Length = 146 Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 33/86 (38%), Positives = 44/86 (51%), Gaps = 23/86 (26%) Query: 73 NELLNSLAAVK-----SGTKAKRAQR----------------PAKYSYVDENGETKTWTG 111 NEL +SLA +K +G A+ R KY Y + NG+ W+G Sbjct: 53 NELKDSLAIIKKYMDDAGVTAEDVYREFGKKLQTGRKNDSGESNKYRY-EYNGQIMYWSG 111 Query: 112 QGRTPAVIKKAMDEQGKSLDDFLIKQ 137 QGR P+VI +A+ + G SLDDFLI Q Sbjct: 112 QGRRPSVIAEAI-KAGGSLDDFLISQ 136 >UniRef50_B8KVY0 H-NS histone family protein n=1 Tax=gamma proteobacterium NOR51-B RepID=B8KVY0_9GAMM Length = 137 Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 54/118 (45%), Gaps = 31/118 (26%) Query: 19 RECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNS 78 R L+ L+ M++KL V +E AAE+ + RK+ + Sbjct: 50 RAADLKKLQSMMKKLGVTASE--------AAELAGKKRKVATRK---------------- 85 Query: 79 LAAVKSGTKA-KRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 KSG ++ KR P KY + GET WTG+GRTP V ++ M E G LD LI Sbjct: 86 ----KSGKRSGKRGPVPPKYE-ITVAGETHQWTGRGRTPIVFREFM-ENGGDLDSCLI 137 >UniRef50_UPI0001912B66 hypothetical protein Salmonellaentericaenterica_15314 n=1 Tax=Salmonella enterica subsp. enterica serovar Typhi str. AG3 RepID=UPI0001912B66 Length = 61 Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 20/20 (100%), Positives = 20/20 (100%) Query: 57 KLQQYREMLIADGIDPNELL 76 KLQQYREMLIADGIDPNELL Sbjct: 1 KLQQYREMLIADGIDPNELL 20 >UniRef50_Q28U97 Trans-acting regulatory protein hvrA n=2 Tax=Jannaschia sp. CCS1 RepID=Q28U97_JANSC Length = 119 Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 11/114 (9%) Query: 25 TLEEMLEKL---EVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAA 81 T+ + LEK+ E+ ++R E + E + R L + + + G +E + Sbjct: 14 TMAKALEKMSLEELQAHQRDVEATIKGYEKKRRADCLAELKAVAKKHGFSLDEFTGGKSG 73 Query: 82 VKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 KSG K AKY+ + +++TWTG+GR P +K+A+ GKSLD+F I Sbjct: 74 SKSGPKG-----VAKYA--NPADKSQTWTGRGRQPNWVKEALS-SGKSLDEFAI 119 >UniRef50_A5UCH6 Acetolactate synthase 3 catalytic subunit n=1 Tax=Haemophilus influenzae PittEE RepID=A5UCH6_HAEIE Length = 122 Score = 44.7 bits (104), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 26/65 (40%), Positives = 40/65 (61%) Query: 1 MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQ 60 M+E ++ L N+R+LRA RE TLE E LEKL+ + E+R E+ ER +L + Sbjct: 1 MNELVRGLTNLRSLRAAVRELTLEQAENALEKLQTAIEEKRANEAELIKAETERKERLAK 60 Query: 61 YREML 65 Y+E++ Sbjct: 61 YKELM 65 >UniRef50_B9NXM2 Trans-acting regulatory protein HvrA n=1 Tax=Rhodobacteraceae bacterium KLH11 RepID=B9NXM2_9RHOB Length = 107 Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%) Query: 87 KAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 K ++ A Y + + ++TWTG+GR PA + A+ E GKS+DD I Sbjct: 60 KGRKPSTKATAKYANPDDPSQTWTGRGRKPAWVNAAL-EAGKSIDDLAI 107 >UniRef50_A6VTC1 Histone family protein nucleoid-structuring protein H-NS n=2 Tax=Marinomonas RepID=A6VTC1_MARMS Length = 132 Score = 41.2 bits (95), Expect = 0.010, Method: Compositional matrix adjust. Identities = 40/136 (29%), Positives = 67/136 (49%), Gaps = 4/136 (2%) Query: 1 MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQ 60 MS L++ N RA A+E ++ LE ++ + + +EEE+A AE ++ + ++ Sbjct: 1 MSLLLELAGNKAKARAAAKELSVAQLENLIAGFNNALEKAKEEEAARDAEQALKSARAEE 60 Query: 61 YREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIK 120 ++ G+ E+ L K+G + P KY + GET WTG+GRTP V + Sbjct: 61 IANLIAKSGLTMEEVA-LLTTPKAGATKGKTVEP-KYR-LTVAGETHEWTGRGRTPKVFQ 117 Query: 121 KAMDEQGKSLDDFLIK 136 + D G S + IK Sbjct: 118 EYFD-AGNSRESVEIK 132 >UniRef50_Q1QIY6 Histone-like nucleoid-structuring protein H-NS n=1 Tax=Nitrobacter hamburgensis X14 RepID=Q1QIY6_NITHX Length = 130 Score = 41.2 bits (95), Expect = 0.011, Method: Compositional matrix adjust. Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 10/110 (9%) Query: 26 LEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSG 85 L + EK+ V+ E+ AE E ++L Q +A +D +EL +L A G Sbjct: 14 LWRLHEKITKVLAEK------IVAEKRELEKRLAQLNRSDVASKVDASELSPALVA---G 64 Query: 86 TKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 + +R Y + ++TW+G+G+TP A+ + G+ +DDF I Sbjct: 65 SPPRRKYPRVLPKYRNPLSPSQTWSGRGKTPHWFANAL-KMGRKIDDFRI 113 >UniRef50_A1B6U3 Histone family protein nucleoid-structuring protein H-NS n=6 Tax=Rhodobacteraceae RepID=A1B6U3_PARDP Length = 105 Score = 40.8 bits (94), Expect = 0.013, Method: Compositional matrix adjust. Identities = 25/47 (53%), Positives = 30/47 (63%), Gaps = 3/47 (6%) Query: 89 KRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 KRA KY + EN E TW+G+GR PA I A+ E GKSL+DF I Sbjct: 62 KRAAVAPKYRH-PENPEI-TWSGRGRKPAWIAGAL-EAGKSLEDFAI 105 >UniRef50_A3SJ27 DNA-binding protein, H-NS family protein n=1 Tax=Roseovarius nubinhibens ISM RepID=A3SJ27_9RHOB Length = 104 Score = 40.4 bits (93), Expect = 0.019, Method: Compositional matrix adjust. Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 8/93 (8%) Query: 43 EESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDE 102 +E A +VEER L + + M G + +EL++ KS KAK P Y + Sbjct: 20 DEQIARKKVEEREEVLAEMKAMAAKRGFEFSELVSG----KSKAKAKDKLPP---KYRNP 72 Query: 103 NGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 ++TW+G+GR P I+ A+ ++G ++DF I Sbjct: 73 KDASQTWSGRGRKPNWIQDAV-KKGAKIEDFAI 104 >UniRef50_A1VWC2 Nucleoid protein H-NS n=2 Tax=Polaromonas naphthalenivorans CJ2 RepID=A1VWC2_POLNA Length = 114 Score = 40.4 bits (93), Expect = 0.019, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 60/123 (48%), Gaps = 26/123 (21%) Query: 25 TLEEMLEKLEVVVNERR---EEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAA 81 TL++ +++ E +V E R +EE ER + + +E++ G+ +L S Sbjct: 6 TLQQQIQEAEAIVKELRKQLDEERKG-----ERMQAVASAKELIKTHGLTAADLGFS--- 57 Query: 82 VKSGTKAKRAQRPAK-------YSYVD-ENGETKTWTGQGRTPAVIKKAMDEQGKSLDDF 133 K A+RPA Y D E+G KTWTG+G++PA + + G + DDF Sbjct: 58 ----GKGSSAKRPAGDKRGVVAAKYQDHESG--KTWTGRGKSPAWLAAQL-AAGYTKDDF 110 Query: 134 LIK 136 LIK Sbjct: 111 LIK 113 >UniRef50_UPI00016A8021 histone family protein nucleoid-structuring protein H-NS n=1 Tax=Burkholderia oklahomensis C6786 RepID=UPI00016A8021 Length = 112 Score = 40.0 bits (92), Expect = 0.020, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 21/115 (18%) Query: 26 LEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSG 85 LE+ L++L +E+ E A+ + Q E++ G+ P+EL + G Sbjct: 14 LEQKLKELRKAADEQLAREKASI---------IGQINELIAKYGVSPHEL--AFPKTTKG 62 Query: 86 TKAKRAQ----RPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIK 136 +KA ++ P K Y D TWTG+G+ PA I+ A + D+FLI+ Sbjct: 63 SKASSSKFQKGTPGKPKYRDPK-TGATWTGKGKPPAWIRDAANR-----DEFLIQ 111 >UniRef50_B5J712 H-NS histone family n=1 Tax=Octadecabacter antarcticus 307 RepID=B5J712_9RHOB Length = 113 Score = 39.7 bits (91), Expect = 0.027, Method: Compositional matrix adjust. Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 6/72 (8%) Query: 67 ADGIDPNELLNSLAAVKSGTKAKRAQRPA---KYSYVDENGETKTWTGQGRTPAVIKKAM 123 A G EL +S +VK +K ++ Q+ A K+ +D+N KTWTG+GR P K+A+ Sbjct: 45 AHGFTLAELGDSKPSVKLASKPRKKQKQASAPKFVNLDDNA--KTWTGKGRQPDWFKQAL 102 Query: 124 DEQGKSLDDFLI 135 GK+ D+ I Sbjct: 103 -AAGKTPDEMAI 113 >UniRef50_Q46693 KorB protein n=6 Tax=root RepID=Q46693_ECOLX Length = 101 Score = 39.7 bits (91), Expect = 0.031, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 31/59 (52%), Gaps = 4/59 (6%) Query: 78 SLAAVK-SGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 SL A+K G R RPAKY D TW+G GR P +K+ +D G SLDD I Sbjct: 46 SLEAMKMQGVANPREHRPAKYR--DPRNAENTWSGTGRRPTWLKELLD-SGLSLDDLKI 101 >UniRef50_B7USZ2 H-NS-like DNA-binding protein n=8 Tax=Enterobacteriaceae RepID=B7USZ2_ECO27 Length = 80 Score = 39.3 bits (90), Expect = 0.035, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 3/80 (3%) Query: 1 MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKL-- 58 M + ++ + ++A+A L+TLE++L+K VVNERREE + + R K+ Sbjct: 1 MIDEFHVMYMYKKIQAEAATTDLKTLEQLLKKFRSVVNERREEYYQEIGDKKARKLKMKR 60 Query: 59 -QQYREMLIADGIDPNELLN 77 Q+ E + D + P +L++ Sbjct: 61 AQRLLEKMACDRVSPEDLID 80 >UniRef50_Q84IJ5 DNA-binding protein n=1 Tax=Janthinobacterium sp. J3 RepID=Q84IJ5_9BURK Length = 109 Score = 39.3 bits (90), Expect = 0.036, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 10/91 (10%) Query: 50 EVEERTRK-LQQYREMLIA----DGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENG 104 E++ R + LQ+ RE ++A G+ ELL + K ++ Q A+Y +N Sbjct: 24 EIKSRQHQDLQKAREQILAIAQEAGVSVEELLAAGGKKSKTGKGQKVQ--ARYQNPSDN- 80 Query: 105 ETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 ++TWTG+GR P I + + +GK+LDDF I Sbjct: 81 -SQTWTGRGRQPKWIAEGL-AKGKALDDFRI 109 >UniRef50_C6BPP4 Histone family protein nucleoid-structuring protein H-NS n=6 Tax=Ralstonia RepID=C6BPP4_RALP1 Length = 103 Score = 38.1 bits (87), Expect = 0.077, Method: Compositional matrix adjust. Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 10/83 (12%) Query: 53 ERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQ 112 ER+ LQ+ RE + EL A +G K P +Y D+ G T WTG+ Sbjct: 29 ERSTALQEVREQISVFEFTAAELGFKGKASLAGKKV-----PTRYK--DDKGNT--WTGR 79 Query: 113 GRTPAVIKKAMDEQGKSLDDFLI 135 G P +K A+ E G L+DFL+ Sbjct: 80 GHRPGWLKAAI-ESGAKLEDFLV 101 >UniRef50_B1KCC1 Histone family protein nucleoid-structuring protein H-NS n=4 Tax=Burkholderia RepID=B1KCC1_BURCC Length = 113 Score = 38.1 bits (87), Expect = 0.079, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 59/121 (48%), Gaps = 22/121 (18%) Query: 17 QARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELL 76 Q + T+ L++ L L ++V E R++E KL++ E + I ELL Sbjct: 3 QMKSPTIRELQKQLGHLNLIVEEARQKEKKI---------KLEEIAEQVKLFDITEIELL 53 Query: 77 NSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIK 136 + VK A R + AKY Y + G ++W+G+G P + GK+LDD+LI+ Sbjct: 54 RAAGFVK----ANRQKASAKY-YDPDTG--RSWSGKGARPKWL------TGKNLDDYLIR 100 Query: 137 Q 137 + Sbjct: 101 E 101 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P0ACG0 DNA-binding protein H-NS n=266 Tax=Gammaproteoba... 162 4e-39 UniRef50_Q5E4C0 Global DNA-binding transcriptional dual regulato... 156 2e-37 UniRef50_P43841 DNA-binding protein H-NS homolog n=25 Tax=Gammap... 141 7e-33 UniRef50_P0A1S5 DNA-binding protein stpA n=131 Tax=Gammaproteoba... 136 2e-31 UniRef50_A4SUA6 Histone-like nucleoid structuring protein n=3 Ta... 135 4e-31 UniRef50_B0UTX9 Histone family protein nucleoid-structuring prot... 132 2e-30 UniRef50_A6FD06 DNA-binding protein H-NS n=1 Tax=Moritella sp. P... 132 5e-30 UniRef50_Q65SY1 Hns protein n=2 Tax=Pasteurellaceae RepID=Q65SY1... 130 9e-30 UniRef50_B2VAY7 Heat-stable nucleoid-structuring protein n=1 Tax... 130 1e-29 UniRef50_B2VB46 H-NS protein n=1 Tax=Erwinia tasmaniensis RepID=... 130 2e-29 UniRef50_Q07ZH5 Histone family protein nucleoid-structuring prot... 130 2e-29 UniRef50_Q6AQT8 Related to DNA-binding protein H-NS n=1 Tax=Desu... 128 4e-29 UniRef50_A7FCL2 DNA-binding protein H-NS n=1 Tax=Yersinia pseudo... 123 1e-27 UniRef50_A7JSK3 DNA-binding protein H-NS n=2 Tax=Mannheimia haem... 123 2e-27 UniRef50_Q15TX2 Histone-like nucleoid-structuring protein H-NS n... 120 9e-27 UniRef50_Q5QW35 Histone-like protein n=2 Tax=Idiomarina RepID=Q5... 120 1e-26 UniRef50_B5EWF6 H-NS histone family n=2 Tax=Enterobacteriaceae R... 118 6e-26 UniRef50_Q2BK75 DNA-binding protein Hns n=1 Tax=Neptuniibacter c... 116 3e-25 UniRef50_A2UW01 Histone-like nucleoid-structuring protein H-NS n... 114 1e-24 UniRef50_UPI0000E0F9F2 DNA-binding protein, H-NS family n=1 Tax=... 113 1e-24 UniRef50_B2TSE7 DNA-binding protein H-NS family n=5 Tax=Enteroba... 112 4e-24 UniRef50_Q2NQ66 DNA-binding protein n=1 Tax=Sodalis glossinidius... 111 6e-24 UniRef50_Q663D4 DNA-binding protein n=1 Tax=Yersinia pseudotuber... 111 8e-24 UniRef50_Q70W58 DNA binding protein n=1 Tax=Yersinia enterocolit... 108 4e-23 UniRef50_C9Q4L7 Putative uncharacterized protein n=1 Tax=Vibrio ... 107 8e-23 UniRef50_C7BHB8 Dna-binding protein h-ns (Histone-like protein h... 104 9e-22 UniRef50_B4TM78 DNA binding protein n=2 Tax=Salmonella enterica ... 100 2e-20 UniRef50_Q2C8B2 Putative DNA-binding protein H-NS n=2 Tax=Photob... 99 5e-20 UniRef50_B1VJ65 HN-S family DNA-binding protein n=3 Tax=Enteroba... 98 9e-20 UniRef50_A4NZJ0 Acetolactate synthase 3 catalytic subunit n=1 Ta... 89 5e-17 UniRef50_A9M4Q2 DNA-binding protein n=1 Tax=Vibrio sp. 23023 Rep... 83 3e-15 UniRef50_Q28U97 Trans-acting regulatory protein hvrA n=2 Tax=Jan... 80 3e-14 UniRef50_B1LDK0 H-NS histone family protein n=5 Tax=Enterobacter... 79 6e-14 UniRef50_Q0VT26 DNA-binding protein H-NS n=2 Tax=Alcanivorax Rep... 73 4e-12 UniRef50_B8KVY0 H-NS histone family protein n=1 Tax=gamma proteo... 72 6e-12 UniRef50_A5UCH6 Acetolactate synthase 3 catalytic subunit n=1 Ta... 64 2e-09 Sequences not found previously or not previously below threshold: UniRef50_A6VTC1 Histone family protein nucleoid-structuring prot... 79 5e-14 UniRef50_Q46969 Microcin DNA binding protein n=8 Tax=Enterobacte... 65 6e-10 UniRef50_Q3J213 Histone-like nucleoid-structuring protein H-NS n... 61 9e-09 UniRef50_A1VWC2 Nucleoid protein H-NS n=2 Tax=Polaromonas naphth... 61 1e-08 UniRef50_B9NXM2 Trans-acting regulatory protein HvrA n=1 Tax=Rho... 60 2e-08 UniRef50_A1WU67 Histone family protein nucleoid-structuring prot... 58 8e-08 UniRef50_Q1QIY6 Histone-like nucleoid-structuring protein H-NS n... 58 1e-07 UniRef50_Q84IJ5 DNA-binding protein n=1 Tax=Janthinobacterium sp... 57 1e-07 UniRef50_B5IYF2 H-NS histone family n=1 Tax=Octadecabacter antar... 56 3e-07 UniRef50_A3SJ27 DNA-binding protein, H-NS family protein n=1 Tax... 56 3e-07 UniRef50_Q2T3P5 H-NS histone family protein n=4 Tax=pseudomallei... 56 3e-07 UniRef50_B7I346 DNA-binding protein H-NS n=18 Tax=Acinetobacter ... 56 3e-07 UniRef50_Q47497 K12 plasmid DNA n=2 Tax=Enterobacteriaceae RepID... 55 7e-07 UniRef50_Q46693 KorB protein n=6 Tax=root RepID=Q46693_ECOLX 55 1e-06 UniRef50_Q47D23 Histone-like nucleoid-structuring protein H-NS n... 54 1e-06 UniRef50_B0RVJ3 DNA-binding protein n=20 Tax=Xanthomonadaceae Re... 54 1e-06 UniRef50_C4AUA6 H-NS histone family protein n=4 Tax=pseudomallei... 54 2e-06 UniRef50_B9Z6W8 Histone family protein nucleoid-structuring prot... 54 2e-06 UniRef50_A1B6U3 Histone family protein nucleoid-structuring prot... 54 2e-06 UniRef50_A9AS00 Histone family protein nucleoid-structuring prot... 54 2e-06 UniRef50_A2SFJ3 Nucleoid protein H-NS n=3 Tax=Burkholderiales Ge... 53 3e-06 UniRef50_Q2SV21 DNA-binding protein BprA n=4 Tax=Burkholderia Re... 52 6e-06 UniRef50_C5CUL7 Histone family protein nucleoid-structuring prot... 52 7e-06 UniRef50_Q1Q9B9 Nucleoid protein H-NS n=2 Tax=Psychrobacter RepI... 52 8e-06 UniRef50_A1VUA7 Histone-like nucleoid-structuring protein H-NS n... 52 8e-06 UniRef50_C7RP80 Histone family protein nucleoid-structuring prot... 52 9e-06 UniRef50_Q13SX0 HNS-like transcriptional regulator n=24 Tax=Burk... 51 9e-06 UniRef50_A3V571 DNA-binding protein, H-NS family n=4 Tax=Rhodoba... 51 9e-06 UniRef50_D1UME5 Histone family protein nucleoid-structuring prot... 51 1e-05 UniRef50_Q606Z8 Putative regulator protein n=1 Tax=Methylococcus... 51 1e-05 UniRef50_Q5NWF8 Predicted histone-like nucleoid-structuring prot... 50 2e-05 UniRef50_Q8VTF2 LEE encoded regulator n=28 Tax=Enterobacteriacea... 50 2e-05 UniRef50_Q3JI76 H-NS histone family protein n=107 Tax=Burkholder... 50 2e-05 UniRef50_A6GS13 Predicted histone-like nucleoid-structuring prot... 50 2e-05 UniRef50_B6JG92 H-NS histone family n=4 Tax=Bradyrhizobiaceae Re... 50 2e-05 UniRef50_B5J712 H-NS histone family n=1 Tax=Octadecabacter antar... 50 3e-05 UniRef50_A0Y514 DNA-binding protein, H-NS family n=2 Tax=Alterom... 50 3e-05 UniRef50_C9NQ13 Putative uncharacterized protein n=1 Tax=Vibrio ... 50 3e-05 UniRef50_C6QA05 Histone family protein nucleoid-structuring prot... 50 3e-05 UniRef50_B2SWM9 Histone family protein nucleoid-structuring prot... 49 4e-05 UniRef50_B0RKN1 Histone-like nucleoid-structuring protein H-NS n... 49 4e-05 UniRef50_D0KXX3 Histone family protein nucleoid-structuring prot... 49 4e-05 UniRef50_A9C2A8 Histone family protein nucleoid-structuring prot... 49 5e-05 UniRef50_P42505 Trans-acting regulatory protein hvrA n=4 Tax=Rho... 48 7e-05 UniRef50_A2SNQ2 Nucleoid protein H-NS n=1 Tax=Methylibium petrol... 48 9e-05 UniRef50_B2JR07 Histone family protein nucleoid-structuring prot... 48 9e-05 UniRef50_C5SD38 Histone family protein nucleoid-structuring prot... 48 1e-04 UniRef50_B3EGE6 Putative uncharacterized protein n=1 Tax=Chlorob... 48 1e-04 UniRef50_D1UM70 Histone family protein nucleoid-structuring prot... 48 1e-04 UniRef50_C6BPP4 Histone family protein nucleoid-structuring prot... 47 1e-04 UniRef50_Q1GMN5 Histone-like nucleoid-structuring protein H-NS n... 47 1e-04 UniRef50_B4SKF4 Histone family protein nucleoid-structuring prot... 47 1e-04 UniRef50_A3X1Q3 Regulator protein, putative n=1 Tax=Nitrobacter ... 47 1e-04 UniRef50_B3DCX2 DNA-binding protein H-NS n=24 Tax=Burkholderia R... 47 2e-04 UniRef50_A1VV25 Histone family protein nucleoid-structuring prot... 47 2e-04 UniRef50_A4X023 Putative uncharacterized protein n=1 Tax=Rhodoba... 47 2e-04 UniRef50_B5S5D9 Histone-like nucleoid-structuring protein h-ns; ... 47 2e-04 UniRef50_A1WX44 Histone family protein nucleoid-structuring prot... 47 2e-04 UniRef50_A9IZ20 Trans-acting regulatory protein n=12 Tax=Proteob... 47 2e-04 UniRef50_A4JS72 Histone family protein nucleoid-structuring prot... 47 2e-04 UniRef50_Q3IVA4 DNA-binding protein, H-NS family n=10 Tax=Rhodob... 47 3e-04 UniRef50_A3U3K4 HNS family histone-like protein n=2 Tax=Oceanico... 46 3e-04 UniRef50_Q3IVA3 Histone-like nucleoid-structuring protein H-NS n... 46 3e-04 UniRef50_A3VE67 Histone-like nucleoid-structuring protein H-NS n... 46 3e-04 UniRef50_UPI00016A8021 histone family protein nucleoid-structuri... 46 3e-04 UniRef50_B2UAC6 Histone family protein nucleoid-structuring prot... 46 3e-04 UniRef50_B1KCC1 Histone family protein nucleoid-structuring prot... 46 3e-04 UniRef50_A6D5D9 DNA-binding protein H-NS n=1 Tax=Vibrio shilonii... 46 4e-04 UniRef50_C1D8I9 Putative DNA segregation ATPase FtsK/SpoIIIE-lik... 46 5e-04 UniRef50_Q0AEM4 Histone family protein nucleoid-structuring prot... 45 5e-04 UniRef50_Q5NZI5 HNS-like transcription regulator protein n=11 Ta... 45 6e-04 UniRef50_B2AJ99 Histone-like nucleoid-structuring protein H-NS n... 45 6e-04 UniRef50_Q2CI47 DNA-binding protein, H-NS family protein n=1 Tax... 45 6e-04 UniRef50_A8LSF2 Histone family protein nucleoid-structuring prot... 45 8e-04 UniRef50_A1TLA4 Histone family protein nucleoid-structuring prot... 45 9e-04 UniRef50_C9Y8W0 Putative uncharacterized protein n=1 Tax=Curviba... 45 9e-04 UniRef50_Q3JY88 H-NS histone family protein n=47 Tax=Betaproteob... 45 0.001 UniRef50_B3EGH4 Histone family protein nucleoid-structuring prot... 45 0.001 UniRef50_A3NU43 H-NS histone family protein n=24 Tax=pseudomalle... 45 0.001 UniRef50_A3NFL1 H-NS histone family protein n=28 Tax=pseudomalle... 45 0.001 UniRef50_A0B3N4 Histone family protein nucleoid-structuring prot... 45 0.001 UniRef50_Q472Y8 Putative DNA-binding protein H-NS n=1 Tax=Ralsto... 45 0.001 UniRef50_B2JNN0 Histone family protein nucleoid-structuring prot... 45 0.001 UniRef50_Q0A759 Histone family protein nucleoid-structuring prot... 44 0.001 UniRef50_Q136M2 Histone-like nucleoid-structuring protein H-NS n... 44 0.001 UniRef50_B5J2H6 H-NS histone family n=2 Tax=Octadecabacter antar... 44 0.001 UniRef50_C4I5I2 H-NS histone family protein n=16 Tax=pseudomalle... 44 0.001 UniRef50_Q13JE5 Histone-like nucleoid-structuring protein H-NS n... 44 0.002 UniRef50_Q21SM3 Histone-like nucleoid-structuring protein H-NS n... 43 0.002 UniRef50_UPI00016A3729 H-NS histone family protein n=4 Tax=Burkh... 43 0.002 UniRef50_A5EX59 Putative uncharacterized protein n=1 Tax=Dichelo... 43 0.002 UniRef50_B0RRY7 Histone-like nucleoid-structuring protein n=13 T... 43 0.002 UniRef50_B5EWD6 Putative uncharacterized protein n=1 Tax=Vibrio ... 43 0.003 UniRef50_C5T058 Histone family protein nucleoid-structuring prot... 43 0.003 UniRef50_Q3JS38 H-NS histone family protein n=7 Tax=pseudomallei... 42 0.004 UniRef50_B2AJM1 Putative uncharacterized protein n=3 Tax=Cupriav... 42 0.004 UniRef50_A4JUS0 Histone family protein nucleoid-structuring prot... 42 0.005 UniRef50_Q2KZ53 DNA-binding protein (Histone) n=5 Tax=Bordetella... 42 0.005 UniRef50_D0KM80 Histone family protein nucleoid-structuring prot... 42 0.005 UniRef50_A0KCC6 Histone family protein nucleoid-structuring prot... 42 0.006 UniRef50_A9BLZ8 Histone family protein nucleoid-structuring prot... 42 0.006 UniRef50_Q3JFR1 H-NS histone family protein n=33 Tax=Burkholderi... 42 0.006 UniRef50_B1XWK6 Histone family protein nucleoid-structuring prot... 42 0.007 UniRef50_C8N836 Putative uncharacterized protein n=1 Tax=Cardiob... 42 0.009 UniRef50_A4JW45 Histone-like nucleoid-structuring protein H-NS n... 41 0.011 UniRef50_B1Z3P6 Histone family protein nucleoid-structuring prot... 41 0.011 UniRef50_B2JM34 Histone family protein nucleoid-structuring prot... 41 0.011 UniRef50_Q3JFX1 H-NS histone family protein n=27 Tax=Burkholderi... 41 0.011 UniRef50_A4JVX9 Histone family protein nucleoid-structuring prot... 41 0.011 UniRef50_B1TFR0 Histone family protein nucleoid-structuring prot... 41 0.014 UniRef50_A1KAI1 Putative trans-acting regulatory protein HvrA n=... 41 0.015 UniRef50_A0B4Y5 Histone family protein nucleoid-structuring prot... 40 0.016 UniRef50_A1K1V6 Putative trans-acting regulatory protein HvrA n=... 40 0.021 UniRef50_Q82UX8 H-NS histone family n=1 Tax=Nitrosomonas europae... 40 0.022 UniRef50_Q0AWY2 Site-specific recombinase, putative n=7 Tax=Clos... 40 0.023 UniRef50_A9C2K0 Histone family protein nucleoid-structuring prot... 40 0.024 UniRef50_D2LRX8 Peptidase M23 n=1 Tax=Bacillus cellulosilyticus ... 40 0.032 UniRef50_C9Y6P0 Putative uncharacterized protein n=1 Tax=Curviba... 39 0.038 UniRef50_Q395B4 Histone-like nucleoid-structuring protein H-NS n... 39 0.042 UniRef50_C9CRV4 Histone family protein nucleoid-structuring prot... 39 0.049 UniRef50_Q6Y661 BphA n=2 Tax=Burkholderia pseudomallei RepID=Q6Y... 38 0.060 UniRef50_Q5NX28 Histone-like nucleoid-structuring protein H-NS n... 38 0.060 UniRef50_C4KW97 H-NS histone family protein n=28 Tax=pseudomalle... 38 0.071 UniRef50_B2TGU8 Histone family protein nucleoid-structuring prot... 38 0.092 UniRef50_Q3JS54 BphA n=11 Tax=Burkholderia pseudomallei RepID=Q3... 38 0.100 >UniRef50_P0ACG0 DNA-binding protein H-NS n=266 Tax=Gammaproteobacteria RepID=HNS_ECO57 Length = 137 Score = 162 bits (409), Expect = 4e-39, Method: Composition-based stats. Identities = 137/137 (100%), Positives = 137/137 (100%) Query: 1 MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQ 60 MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQ Sbjct: 1 MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQ 60 Query: 61 YREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIK 120 YREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIK Sbjct: 61 YREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIK 120 Query: 121 KAMDEQGKSLDDFLIKQ 137 KAMDEQGKSLDDFLIKQ Sbjct: 121 KAMDEQGKSLDDFLIKQ 137 >UniRef50_Q5E4C0 Global DNA-binding transcriptional dual regulator H-NS n=5 Tax=Gammaproteobacteria RepID=Q5E4C0_VIBF1 Length = 173 Score = 156 bits (394), Expect = 2e-37, Method: Composition-based stats. Identities = 70/135 (51%), Positives = 98/135 (72%), Gaps = 1/135 (0%) Query: 1 MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQ 60 MS+ +K L N+R+LRA +RE TLE LEE LEKL+ VV ER+E E+ A++ E+ KL++ Sbjct: 40 MSDTIKTLLNLRSLRALSREMTLEQLEEALEKLQSVVAERQESEAEERAQLAEKQAKLEE 99 Query: 61 YREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIK 120 +R+M+I GI P +LL++++A TK KRA RPAKY + D GE KTWTGQGRTP+ ++ Sbjct: 100 FRQMMIDSGIAPEDLLDTMSATTVKTKQKRAPRPAKYKFQDHAGEEKTWTGQGRTPSALQ 159 Query: 121 KAMDEQGKSLDDFLI 135 +D GK L++FLI Sbjct: 160 AQLD-AGKKLEEFLI 173 >UniRef50_P43841 DNA-binding protein H-NS homolog n=25 Tax=Gammaproteobacteria RepID=HNS_HAEIN Length = 134 Score = 141 bits (355), Expect = 7e-33, Method: Composition-based stats. Identities = 64/135 (47%), Positives = 87/135 (64%), Gaps = 1/135 (0%) Query: 1 MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQ 60 M+E ++ L N+R+LRA RE TLE E LEKL+ + E+R E+ ER +L + Sbjct: 1 MNELVRGLTNLRSLRAAVRELTLEQAENALEKLQTAIEEKRANEAELIKAETERKERLAK 60 Query: 61 YREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIK 120 Y+E++ +GI P EL +AKRA RPAKY+++DENGE KTWTGQGRTP I+ Sbjct: 61 YKELMEKEGITPEELHEIFGTKTVSIRAKRAPRPAKYAFIDENGEHKTWTGQGRTPRPIQ 120 Query: 121 KAMDEQGKSLDDFLI 135 A++ +GKSL DF I Sbjct: 121 NALN-KGKSLSDFEI 134 >UniRef50_P0A1S5 DNA-binding protein stpA n=131 Tax=Gammaproteobacteria RepID=STPA_SALTI Length = 133 Score = 136 bits (342), Expect = 2e-31, Method: Composition-based stats. Identities = 73/135 (54%), Positives = 91/135 (67%), Gaps = 2/135 (1%) Query: 1 MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQ 60 M+ L+ LNNIRTLRA ARE +++ LEEMLEK VV ERREEE ++ E+ K+ Sbjct: 1 MNLMLQNLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEELQQRQLAEKQEKINA 60 Query: 61 YREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIK 120 + E++ ADGI+P EL +A+ K KR RPAKY + D NGE KTWTGQGRTP I Sbjct: 61 FLELMKADGINPEELFAMDSAMPRSAK-KRQPRPAKYRFTDFNGEEKTWTGQGRTPKPIA 119 Query: 121 KAMDEQGKSLDDFLI 135 +A+ GKSLDDFLI Sbjct: 120 QAL-AAGKSLDDFLI 133 >UniRef50_A4SUA6 Histone-like nucleoid structuring protein n=3 Tax=Aeromonas salmonicida subsp. salmonicida RepID=A4SUA6_AERS4 Length = 136 Score = 135 bits (340), Expect = 4e-31, Method: Composition-based stats. Identities = 64/138 (46%), Positives = 87/138 (63%), Gaps = 5/138 (3%) Query: 1 MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQ 60 M++ LK+L NIR+LRA R+ E L+E+ EK + VV E+ + A E +KL + Sbjct: 1 MNDFLKVLLNIRSLRAAVRDLPFEQLQEIKEKFDTVVQEQLKAAETDQAAKLEHQKKLAE 60 Query: 61 YREMLIADGIDPNELLNS---LAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPA 117 +RE+L +G+ P +LL+ A +G KAKRA RPAKY Y+ E GE +TWTGQGR PA Sbjct: 61 FRELLAIEGLSPEDLLSGRGLTAWADAGAKAKRAPRPAKYRYLVE-GEARTWTGQGRMPA 119 Query: 118 VIKKAMDEQGKSLDDFLI 135 I A+ G+SLD FLI Sbjct: 120 QIAAAI-ASGESLDAFLI 136 >UniRef50_B0UTX9 Histone family protein nucleoid-structuring protein H-NS n=2 Tax=Histophilus somni RepID=B0UTX9_HAES2 Length = 134 Score = 132 bits (333), Expect = 2e-30, Method: Composition-based stats. Identities = 53/135 (39%), Positives = 81/135 (60%), Gaps = 1/135 (0%) Query: 1 MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQ 60 MS+ LK L +IR LR +E TL+ LE +LEK +++ NERR+ + +ER ++ + Sbjct: 1 MSDLLKTLTSIRALRVATKEFTLQELESILEKFQLITNERRQLIEENQRKEQERLERIAK 60 Query: 61 YREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIK 120 Y+ +L DG+ +L++ + K A R AKY Y D+NG+ KTWTGQGR P ++ Sbjct: 61 YKALLAQDGLTLTDLVDDPTFTTKRPRKKIAPRKAKYQYTDQNGKVKTWTGQGRMPLSLQ 120 Query: 121 KAMDEQGKSLDDFLI 135 ++ GK+L DF I Sbjct: 121 AELNT-GKTLADFEI 134 >UniRef50_A6FD06 DNA-binding protein H-NS n=1 Tax=Moritella sp. PE36 RepID=A6FD06_9GAMM Length = 135 Score = 132 bits (331), Expect = 5e-30, Method: Composition-based stats. Identities = 57/137 (41%), Positives = 88/137 (64%), Gaps = 4/137 (2%) Query: 1 MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQ 60 M++ +KI N R+LRA +E ++E LEE+L K +V++R+E +A + + + K+ + Sbjct: 1 MNDFIKIFLNARSLRAATKELSVEQLEEVLIKFTTIVDDRKEANAAELEKQQAKQAKMNE 60 Query: 61 YREMLIADGIDPNELLN--SLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAV 118 L +GI P EL+ A K+ K KR RPAKY+Y D NGETKTWTGQGR P Sbjct: 61 ILLQLKENGISPEELMGLTDSTAEKTKNKTKRGPRPAKYAY-DFNGETKTWTGQGRMPLP 119 Query: 119 IKKAMDEQGKSLDDFLI 135 +++ M+E+G S++++LI Sbjct: 120 LQEVMNEKG-SIEEYLI 135 >UniRef50_Q65SY1 Hns protein n=2 Tax=Pasteurellaceae RepID=Q65SY1_MANSM Length = 134 Score = 130 bits (328), Expect = 9e-30, Method: Composition-based stats. Identities = 65/135 (48%), Positives = 90/135 (66%), Gaps = 1/135 (0%) Query: 1 MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQ 60 M+E +K LNN+R LR+ A+E ++E LE ++EK ++V+ E++ EE EER +L++ Sbjct: 1 MNEVIKTLNNLRRLRSMAKELSIEQLENIIEKFQLVIEEKKAEELEIKRLEEERKNRLEK 60 Query: 61 YREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIK 120 YRE+L DGI +EL LA + KAKRA AKY Y++ENGE KTWTGQGR P I+ Sbjct: 61 YRELLKEDGITADELAQILAGKNNTAKAKRAPLSAKYKYINENGEQKTWTGQGRMPKAIQ 120 Query: 121 KAMDEQGKSLDDFLI 135 ++ GKSL DF I Sbjct: 121 LQLN-AGKSLSDFAI 134 >UniRef50_B2VAY7 Heat-stable nucleoid-structuring protein n=1 Tax=Erwinia tasmaniensis RepID=B2VAY7_ERWT9 Length = 145 Score = 130 bits (327), Expect = 1e-29, Method: Composition-based stats. Identities = 46/134 (34%), Positives = 72/134 (53%), Gaps = 1/134 (0%) Query: 4 ALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYRE 63 +L+NIR+LRA ARE E L + +EK+ V+ ER +E ++ L++ ++ Sbjct: 10 VTAVLSNIRSLRAYAREVDFEFLRDAVEKIHSVLAEREDEYKEEQRRKQDEVENLEKVKK 69 Query: 64 MLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAM 123 ++ G+DP L S + K K R P KY D +G T W+G+G+ PA K A+ Sbjct: 70 YMVELGLDPALLTPSSVSPKRSGKNYRPVVPPKYRIKDTDGNTHEWSGRGKPPAAFKAAL 129 Query: 124 DEQGKSLDDFLIKQ 137 D G++ DD LI + Sbjct: 130 D-AGRNKDDLLIDK 142 >UniRef50_B2VB46 H-NS protein n=1 Tax=Erwinia tasmaniensis RepID=B2VB46_ERWT9 Length = 136 Score = 130 bits (326), Expect = 2e-29, Method: Composition-based stats. Identities = 66/130 (50%), Positives = 86/130 (66%), Gaps = 3/130 (2%) Query: 6 KILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREML 65 + LN IR +RA ARE E +EE+ EKL +V++ R+E A A++ ER KL++YREML Sbjct: 10 QGLNKIRVMRAAAREMPYEMMEEIREKLNAIVDDLRDEHQARASQESERLEKLEKYREML 69 Query: 66 IADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDE 125 + DGIDP +L +S K KA RA RPAKY Y D +G KTWTGQGRTP + A+ Sbjct: 70 LQDGIDPADLADSELPRKQ--KASRAPRPAKYRYTDTDGSEKTWTGQGRTPLAMANAL-A 126 Query: 126 QGKSLDDFLI 135 GK ++DFLI Sbjct: 127 AGKKIEDFLI 136 >UniRef50_Q07ZH5 Histone family protein nucleoid-structuring protein H-NS n=21 Tax=Shewanella RepID=Q07ZH5_SHEFN Length = 136 Score = 130 bits (326), Expect = 2e-29, Method: Composition-based stats. Identities = 50/135 (37%), Positives = 76/135 (56%), Gaps = 3/135 (2%) Query: 1 MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQ 60 MS+ L IL + R +A +E +L+ L E KLE ++ ER+EEE ER ++ + Sbjct: 1 MSDFLDILTHGRRFKAAVKELSLDDLRETAAKLEKIITERQEEEKLELEANAERNARIAE 60 Query: 61 YREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIK 120 + G+ +L + ++VK+ K KRA RP KY + +GE WTGQGR P V K Sbjct: 61 ILAQIENSGLSIEDLGDVTSSVKT-AKTKRAPRPPKYQ-ITVDGELIQWTGQGRMPTVFK 118 Query: 121 KAMDEQGKSLDDFLI 135 + +D GK++ +FLI Sbjct: 119 QQVD-SGKNMSEFLI 132 >UniRef50_Q6AQT8 Related to DNA-binding protein H-NS n=1 Tax=Desulfotalea psychrophila RepID=Q6AQT8_DESPS Length = 143 Score = 128 bits (323), Expect = 4e-29, Method: Composition-based stats. Identities = 53/137 (38%), Positives = 81/137 (59%), Gaps = 3/137 (2%) Query: 1 MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQ 60 MS LK N+R+L A R+ ++E LE L+KL +V +R+E A +E + K+++ Sbjct: 10 MSSFLKTFLNVRSLNAATRDLSIEQLESTLQKLGKIVEDRKEVVLAGEKLLEAKLAKMKE 69 Query: 61 YREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIK 120 +++++ DGIDP E + K K + P KY Y+D E KTW+G GRTP VIK Sbjct: 70 FKDLMEEDGIDPFEFAELCST--GNVKQKNSPLPPKYEYMD-GAELKTWSGYGRTPEVIK 126 Query: 121 KAMDEQGKSLDDFLIKQ 137 A+ +GKS + FLI++ Sbjct: 127 NAIKNEGKSKESFLIER 143 >UniRef50_A7FCL2 DNA-binding protein H-NS n=1 Tax=Yersinia pseudotuberculosis IP 31758 RepID=A7FCL2_YERP3 Length = 141 Score = 123 bits (310), Expect = 1e-27, Method: Composition-based stats. Identities = 59/137 (43%), Positives = 87/137 (63%), Gaps = 2/137 (1%) Query: 3 EALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYR 62 + LK++NN+R+LRA A+E +++L E EKL V+ ER +EE A E ++ L+++R Sbjct: 4 DTLKLINNLRSLRAFAKELDIDSLREFQEKLNTVIQEREKEEEEAKQEELKKRETLERFR 63 Query: 63 EMLIADGIDPNELLNSLAAVKSGTKAK--RAQRPAKYSYVDENGETKTWTGQGRTPAVIK 120 + GI+P E+ N L K+ K K R +R KY Y+D NGE + WTGQGR P I Sbjct: 64 NQITEAGINPEEVANFLTNTKTVNKVKSVRKKRTPKYEYLDSNGEVRQWTGQGRHPQPIS 123 Query: 121 KAMDEQGKSLDDFLIKQ 137 +A+ +GK L+DFLIK+ Sbjct: 124 EAIKNEGKKLEDFLIKK 140 >UniRef50_A7JSK3 DNA-binding protein H-NS n=2 Tax=Mannheimia haemolytica RepID=A7JSK3_PASHA Length = 133 Score = 123 bits (309), Expect = 2e-27, Method: Composition-based stats. Identities = 60/131 (45%), Positives = 82/131 (62%), Gaps = 1/131 (0%) Query: 5 LKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREM 64 LK L NIR+LRA A++ LE L+ + EKL++++ E+ EE E ++ L +YREM Sbjct: 4 LKSLLNIRSLRALAKDLALEQLKSISEKLDIIIAEKEEEMKQEELEKLKQLESLNKYREM 63 Query: 65 LIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMD 124 L DG+ +EL LA T+ + RPAKY +VD NG KTWTGQGRTP ++ A+D Sbjct: 64 LKQDGLSIDELAELLADKVIKTRKALSPRPAKYKFVDANGNEKTWTGQGRTPKALQDALD 123 Query: 125 EQGKSLDDFLI 135 GK L+DF I Sbjct: 124 -SGKKLEDFAI 133 >UniRef50_Q15TX2 Histone-like nucleoid-structuring protein H-NS n=4 Tax=Alteromonadales RepID=Q15TX2_PSEA6 Length = 133 Score = 120 bits (302), Expect = 9e-27, Method: Composition-based stats. Identities = 48/135 (35%), Positives = 72/135 (53%), Gaps = 3/135 (2%) Query: 1 MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQ 60 MS+ + IL + R L+ +E ++E LE + +KL +++ R+ +E +E+ KL + Sbjct: 1 MSDFISILTHGRRLQGAVKELSVEELETVADKLNSIIDNRKAKELEQQEAAKEKNEKLNE 60 Query: 61 YREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIK 120 L A G+D N+L + A KS K +RP KY D G WTG GR P V K Sbjct: 61 ILAQLEAAGLDVNDLQKAEPAKKSTKVGK--KRPVKYILKDSAGNEHKWTGIGRMPKVFK 118 Query: 121 KAMDEQGKSLDDFLI 135 +D GKSLD +L+ Sbjct: 119 AELD-NGKSLDSYLL 132 >UniRef50_Q5QW35 Histone-like protein n=2 Tax=Idiomarina RepID=Q5QW35_IDILO Length = 138 Score = 120 bits (301), Expect = 1e-26, Method: Composition-based stats. Identities = 56/139 (40%), Positives = 86/139 (61%), Gaps = 4/139 (2%) Query: 1 MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQ 60 MSE + IL + R L+A +E L LE + K + V+++RREEE+ + E + +K+++ Sbjct: 1 MSEFINILRHERRLKAALKELDLNELESVKSKFDSVISQRREEEAEKQRQNEAKQKKIEE 60 Query: 61 YREMLIADGIDPNELLNSL---AAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPA 117 ++ + GI+ +++L + T+ KRA +P KY Y DENGE +TWTGQGR P Sbjct: 61 FKSAMADAGIELSDILEQELGGEPIVKTTRKKRAPKPPKYEYTDENGEKQTWTGQGRMPK 120 Query: 118 VIKKAMDEQGKSLDDFLIK 136 +K A+D GKSL+ FLIK Sbjct: 121 AMKTAVD-NGKSLEAFLIK 138 >UniRef50_B5EWF6 H-NS histone family n=2 Tax=Enterobacteriaceae RepID=B5EWF6_SALA4 Length = 141 Score = 118 bits (296), Expect = 6e-26, Method: Composition-based stats. Identities = 54/132 (40%), Positives = 77/132 (58%), Gaps = 2/132 (1%) Query: 4 ALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYRE 63 K+L+NIR+LRA ARE E L++M +K VV E RE+ A E E+R + ++ E Sbjct: 7 VRKVLSNIRSLRAFAREVDFELLKDMAQKFNAVVEELREDAEREAKEREQRDARKRELLE 66 Query: 64 MLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAM 123 M+ ++G EL + + K Q PAKY + + NGE + WTG+GR P I++A+ Sbjct: 67 MIASEGFSVEELTGASDTGSTRKKRVVQQVPAKYQF-EVNGEMQYWTGRGRKPKAIEEAI 125 Query: 124 DEQGKSLDDFLI 135 GK LDDFLI Sbjct: 126 -AAGKKLDDFLI 136 >UniRef50_Q2BK75 DNA-binding protein Hns n=1 Tax=Neptuniibacter caesariensis RepID=Q2BK75_9GAMM Length = 130 Score = 116 bits (290), Expect = 3e-25, Method: Composition-based stats. Identities = 44/135 (32%), Positives = 74/135 (54%), Gaps = 5/135 (3%) Query: 1 MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQ 60 MS+ LKIL +LR Q + ++ LE+++ L V+ ++R EE A A +E+ K++ Sbjct: 1 MSDFLKILTRKNSLRKQCHDLSVAELEKVISDLTVITEDKRAEEEAVLAAEQEKAAKIES 60 Query: 61 YREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIK 120 R+ + G+D N+L++ + T A + + KY VD+ G W+G+GRTP + Sbjct: 61 IRQSMQDAGVDINDLMSLIGE----TAAPKKKVQPKYRIVDDEGNEHEWSGRGRTPLAFQ 116 Query: 121 KAMDEQGKSLDDFLI 135 D +G + DD LI Sbjct: 117 AYFD-KGFTKDDCLI 130 >UniRef50_A2UW01 Histone-like nucleoid-structuring protein H-NS n=1 Tax=Shewanella putrefaciens 200 RepID=A2UW01_SHEPU Length = 133 Score = 114 bits (285), Expect = 1e-24, Method: Composition-based stats. Identities = 44/136 (32%), Positives = 76/136 (55%), Gaps = 8/136 (5%) Query: 1 MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQ 60 ++E IL + R +A +E T + L E+ EKL +V +R+ + A + + + +++Q Sbjct: 6 ITEFQSILLHARRFKASVKELTTQQLIEVQEKLNAIVEDRKAADEALKEQEQAKLAQIEQ 65 Query: 61 YREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIK 120 + ++ G+ ++L + + K +R +P KY+ + +GE TWTGQGR P IK Sbjct: 66 LKSLIEEAGLSLDDLSS------TPIKRERQPKPPKYA-ITVDGEQVTWTGQGRMPKPIK 118 Query: 121 KAMDEQGKSLDDFLIK 136 A+D G SL+ FLIK Sbjct: 119 AAID-NGASLESFLIK 133 >UniRef50_UPI0000E0F9F2 DNA-binding protein, H-NS family n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=UPI0000E0F9F2 Length = 134 Score = 113 bits (284), Expect = 1e-24, Method: Composition-based stats. Identities = 47/136 (34%), Positives = 77/136 (56%), Gaps = 3/136 (2%) Query: 1 MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQ 60 MS+ IL + R L+ +E +LE L++ EKL VV +R E ++A A E+ +++ Sbjct: 1 MSDFTAILLHTRRLQGATKELSLEELKDAQEKLASVVEKRVELQAAEEASKAEKAAQIEA 60 Query: 61 YREMLIADGIDPNELLNSLAAVKSGTKAKR-AQRPAKYSYVDENGETKTWTGQGRTPAVI 119 ++ ++A G+D ++ +L KS +R A+RP KYS + +G WTG GR P V Sbjct: 61 IKQQMLAAGLDISDFAPNLETSKSTKSRRRGAKRPIKYS-ISVDGVRTDWTGIGRMPVVF 119 Query: 120 KKAMDEQGKSLDDFLI 135 +A+ GK L+DF + Sbjct: 120 SEALS-SGKQLEDFSV 134 >UniRef50_B2TSE7 DNA-binding protein H-NS family n=5 Tax=Enterobacteriaceae RepID=B2TSE7_SHIB3 Length = 154 Score = 112 bits (279), Expect = 4e-24, Method: Composition-based stats. Identities = 62/134 (46%), Positives = 82/134 (61%), Gaps = 3/134 (2%) Query: 6 KILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREML 65 + + NIR+LR ARE E L EM +KL VVV ERREE A E +E K QQ E + Sbjct: 15 RTMMNIRSLRVFAREVDFEQLLEMQDKLNVVVEERREEAEREAVERQELEAKRQQAIEYI 74 Query: 66 IADGIDPNELLNSLAA--VKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAM 123 I+ G+DP LL + A VK+ KAK R AKY + DENGE + W+G G+ P ++K + Sbjct: 75 ISLGLDPESLLAPVTADTVKTRRKAKGGVRKAKYRFKDENGEIREWSGNGKRPLALQKLL 134 Query: 124 DEQGKSLDDFLIKQ 137 DE G ++DFLI + Sbjct: 135 DE-GHFMEDFLIDK 147 >UniRef50_Q2NQ66 DNA-binding protein n=1 Tax=Sodalis glossinidius str. 'morsitans' RepID=Q2NQ66_SODGM Length = 144 Score = 111 bits (278), Expect = 6e-24, Method: Composition-based stats. Identities = 57/136 (41%), Positives = 84/136 (61%), Gaps = 3/136 (2%) Query: 2 SEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQY 61 E ++L+NIR+ RA ARE E L+EM EKL V+ ERR + AAE R K ++ Sbjct: 8 GEIRRVLSNIRSTRAFARETNFELLKEMHEKLGAVIEERRTDAEKEAAERALREEKRKEI 67 Query: 62 REMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKK 121 +++ +G ELL + S ++K+ + PAKY +V ENGETKTWTG+GR P I + Sbjct: 68 LQLIEGEGFTAEELLGDDVNI-SKKRSKKPKAPAKYEFV-ENGETKTWTGKGRKPKPIAE 125 Query: 122 AMDEQGKSLDDFLIKQ 137 A+ G++L++FLI + Sbjct: 126 ALS-AGRTLEEFLINK 140 >UniRef50_Q663D4 DNA-binding protein n=1 Tax=Yersinia pseudotuberculosis RepID=Q663D4_YERPS Length = 137 Score = 111 bits (277), Expect = 8e-24, Method: Composition-based stats. Identities = 48/134 (35%), Positives = 71/134 (52%), Gaps = 5/134 (3%) Query: 2 SEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQY 61 +E +IL NIRT+R RE L E EKL V + ER+ E E+ ++ K ++ Sbjct: 6 AEVKRILANIRTIRTFVREVDYLFLVEAHEKLGVALEERKAEFECEQEELNKKEAKKKEL 65 Query: 62 REMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKK 121 + ++G EL + + K R KY++ +ENGE K W+G GR P I+ Sbjct: 66 LAFIASEGFTLEELNGNGITKR---KKPPVHRKPKYTF-EENGEMKVWSGVGRKPKPIEV 121 Query: 122 AMDEQGKSLDDFLI 135 A++E GK+L DFLI Sbjct: 122 ALNE-GKTLSDFLI 134 >UniRef50_Q70W58 DNA binding protein n=1 Tax=Yersinia enterocolitica RepID=Q70W58_YEREN Length = 147 Score = 108 bits (271), Expect = 4e-23, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 67/135 (49%), Gaps = 8/135 (5%) Query: 3 EALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYR 62 + L++ R ++ + C L ++ KL++ ++E ++ ++ R K + Sbjct: 8 DVYTYLSSGRNMKQFIKRCDYGLLIDLQNKLDIHISEWAAQQEKEQEAIQLRNEKRSELL 67 Query: 63 EMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKA 122 +++++G P EL+ A R++R KY Y D G K W+G GR P I++ Sbjct: 68 ALIVSEGFSPEELITVAAIKT------RSRRRMKYQYRD-GGAIKKWSGVGRVPRSIQER 120 Query: 123 MDEQGKSLDDFLIKQ 137 ++ G +LDDFLI + Sbjct: 121 LN-SGATLDDFLIAE 134 >UniRef50_C9Q4L7 Putative uncharacterized protein n=1 Tax=Vibrio sp. RC341 RepID=C9Q4L7_9VIBR Length = 283 Score = 107 bits (268), Expect = 8e-23, Method: Composition-based stats. Identities = 38/135 (28%), Positives = 69/135 (51%), Gaps = 3/135 (2%) Query: 1 MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRK-LQ 59 M++ LK L++ R + + +++ + ++ L+ + NE+ E E+ AAE+EER R+ L+ Sbjct: 148 MTDILKSLSSPRRAKTMFKNASVDQVNLIINTLQNLRNEK-ELEAKMAAEIEERERQELE 206 Query: 60 QYREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVI 119 R ++ ID ++L + K K + K S G+ + W G G PA + Sbjct: 207 ALRAQILEKNIDFSKLSALMGENKKPRKNSSKRTSPKPSATYAYGDNEVWDGVGEVPAAL 266 Query: 120 KKAMDEQGKSLDDFL 134 + +DE G L DF+ Sbjct: 267 QSLLDE-GFELSDFV 280 >UniRef50_C7BHB8 Dna-binding protein h-ns (Histone-like protein hlp-ii) (Protein h1 (Protein b1)) n=2 Tax=Photorhabdus RepID=C7BHB8_PHOAA Length = 148 Score = 104 bits (260), Expect = 9e-22, Method: Composition-based stats. Identities = 42/134 (31%), Positives = 73/134 (54%), Gaps = 6/134 (4%) Query: 8 LNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIA 67 L+ I +LR A+ +E LE++ + LE+VV E +E + E E++ +K + +M+ Sbjct: 17 LSRITSLRKFAQTKDVEWLEDVYKTLEIVVQESKETFRLMSLEAEQKEQKRLEILKMIEE 76 Query: 68 DGIDPNELLNSLA----AVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAM 123 G++ N + + K K R KY + +ENGE K W+G G+ P ++K + Sbjct: 77 IGLNINTINTPITLSDFKPKKSNARKGKTRKPKYQF-NENGEIKYWSGNGKKPLGLQKLL 135 Query: 124 DEQGKSLDDFLIKQ 137 +E G SL++FLI + Sbjct: 136 NE-GHSLNEFLITK 148 >UniRef50_B4TM78 DNA binding protein n=2 Tax=Salmonella enterica subsp. enterica serovar Schwarzengrund RepID=B4TM78_SALSV Length = 130 Score = 99.7 bits (247), Expect = 2e-20, Method: Composition-based stats. Identities = 40/135 (29%), Positives = 65/135 (48%), Gaps = 8/135 (5%) Query: 1 MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQ 60 M+ L + R L+ RE LE + ++ ++E+R E +R K + Sbjct: 1 MNRIQDELTSERALKKFLRESDFAFLEMLSARISAALDEKRAEHIEQEKLRRQREEKRNE 60 Query: 61 YREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIK 120 ++ ++G P EL+++ A KS + + Y Y ENG K W+G GR P VI+ Sbjct: 61 LLALIESEGFSPTELVSTTPAKKSAKRKAK------YQYF-ENGVHKKWSGVGRVPVVIQ 113 Query: 121 KAMDEQGKSLDDFLI 135 + +D GK L+ FLI Sbjct: 114 QELD-AGKPLESFLI 127 >UniRef50_Q2C8B2 Putative DNA-binding protein H-NS n=2 Tax=Photobacterium RepID=Q2C8B2_9GAMM Length = 130 Score = 99.0 bits (245), Expect = 5e-20, Method: Composition-based stats. Identities = 65/132 (49%), Positives = 87/132 (65%), Gaps = 2/132 (1%) Query: 4 ALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYRE 63 + IL N+R+LRAQARE ++ L+E L+K VV ERREEE AA A +E+ KLQ+YR+ Sbjct: 1 MIDILLNLRSLRAQAREMSVVDLQEGLQKFTQVVEERREEEEAANAVNKEQEAKLQKYRD 60 Query: 64 MLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAM 123 ML A+GI EL+ L K + A+ AKY++ DENGE KTWTGQGRTP +++ + Sbjct: 61 MLEAEGITAEELVALLGDAPKAKKKRAARP-AKYTFSDENGEEKTWTGQGRTPKALQQLL 119 Query: 124 DEQGKSLDDFLI 135 D G L +F I Sbjct: 120 D-NGAQLSEFEI 130 >UniRef50_B1VJ65 HN-S family DNA-binding protein n=3 Tax=Enterobacteriaceae RepID=B1VJ65_PROMH Length = 171 Score = 97.8 bits (242), Expect = 9e-20, Method: Composition-based stats. Identities = 46/134 (34%), Positives = 65/134 (48%), Gaps = 4/134 (2%) Query: 7 ILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLI 66 L + LR A+ E LE + +L +V E+REE E+ E K + + L Sbjct: 16 SLTGLTELRKFAKTKNFEWLENLANQLNGIVEEQREEFELRKLELAELEEKRLKAIKYLE 75 Query: 67 ADGIDPNELLNSL--AAVKSGTKAKRAQRPAKYSYVD-ENGETKTWTGQGRTPAVIKKAM 123 G+DP + S+ K G K K PAKY + E G+T TWTG GR ++ + Sbjct: 76 ELGLDPETIHISVFETTDKKGKKRKSKNTPAKYRFTHPETGKTDTWTGIGRMKKGLQLLI 135 Query: 124 DEQGKSLDDFLIKQ 137 D G SLD+FLI + Sbjct: 136 D-AGHSLDEFLIDK 148 >UniRef50_A4NZJ0 Acetolactate synthase 3 catalytic subunit n=1 Tax=Haemophilus influenzae 22.4-21 RepID=A4NZJ0_HAEIN Length = 100 Score = 88.9 bits (219), Expect = 5e-17, Method: Composition-based stats. Identities = 34/96 (35%), Positives = 50/96 (52%) Query: 1 MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQ 60 M+E ++ L N+R+LRA RE TLE E LEKL+ + E+R E+ ER +L + Sbjct: 1 MNELVRGLTNLRSLRAAVRELTLEQAENALEKLQTAIEEKRANEAELIKAETERKERLAK 60 Query: 61 YREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAK 96 Y+E++ +GI P EL +K P K Sbjct: 61 YKELMEKEGITPEELHEIFGTKNCINSSKTCSTPCK 96 >UniRef50_A9M4Q2 DNA-binding protein n=1 Tax=Vibrio sp. 23023 RepID=A9M4Q2_9VIBR Length = 135 Score = 82.8 bits (203), Expect = 3e-15, Method: Composition-based stats. Identities = 36/137 (26%), Positives = 66/137 (48%), Gaps = 8/137 (5%) Query: 1 MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQ 60 M++ +K L R +A + +E L+ +L + + E+ E A ++ + L++ Sbjct: 1 MTDIIKQLTQPRRAKALFKHTNIEQLDRILNIITEIKIEKEHEAQKQAEHEQQERQALEE 60 Query: 61 YREMLIADGIDPNELLNSLAAVKSGTKAKRAQRP---AKYSYVDENGETKTWTGQGRTPA 117 RE ++ G+D ++L++ + + K K Y Y G+ KTW G+G P Sbjct: 61 MREEILNKGLDFDKLVSLMKPQRKAKKRKSTGTKDTQKTYRY----GDNKTWNGEGNVPE 116 Query: 118 VIKKAMDEQGKSLDDFL 134 ++K +DE G L DFL Sbjct: 117 EMQKMLDE-GLELADFL 132 >UniRef50_Q28U97 Trans-acting regulatory protein hvrA n=2 Tax=Jannaschia sp. CCS1 RepID=Q28U97_JANSC Length = 119 Score = 79.7 bits (195), Expect = 3e-14, Method: Composition-based stats. Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 11/114 (9%) Query: 25 TLEEMLEKL---EVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAA 81 T+ + LEK+ E+ ++R E + E + R L + + + G +E + Sbjct: 14 TMAKALEKMSLEELQAHQRDVEATIKGYEKKRRADCLAELKAVAKKHGFSLDEFTGGKSG 73 Query: 82 VKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 KSG K AKY+ + +++TWTG+GR P +K+A+ GKSLD+F I Sbjct: 74 SKSGPKG-----VAKYA--NPADKSQTWTGRGRQPNWVKEALS-SGKSLDEFAI 119 >UniRef50_A6VTC1 Histone family protein nucleoid-structuring protein H-NS n=2 Tax=Marinomonas RepID=A6VTC1_MARMS Length = 132 Score = 78.9 bits (193), Expect = 5e-14, Method: Composition-based stats. Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 4/136 (2%) Query: 1 MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQ 60 MS L++ N RA A+E ++ LE ++ + + +EEE+A AE ++ + ++ Sbjct: 1 MSLLLELAGNKAKARAAAKELSVAQLENLIAGFNNALEKAKEEEAARDAEQALKSARAEE 60 Query: 61 YREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIK 120 ++ G+ E+ TK K + KY + GET WTG+GRTP V + Sbjct: 61 IANLIAKSGLTMEEVALLTTPKAGATKGKTVE--PKYR-LTVAGETHEWTGRGRTPKVFQ 117 Query: 121 KAMDEQGKSLDDFLIK 136 + D G S + IK Sbjct: 118 EYFD-AGNSRESVEIK 132 >UniRef50_B1LDK0 H-NS histone family protein n=5 Tax=Enterobacteriaceae RepID=B1LDK0_ECOSM Length = 146 Score = 78.5 bits (192), Expect = 6e-14, Method: Composition-based stats. Identities = 35/137 (25%), Positives = 57/137 (41%), Gaps = 13/137 (9%) Query: 1 MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQ 60 +S L N +R E + E ++ + LE + +R E L Sbjct: 13 LSTVRTSLLNSNLVRKLIMEMSDEDFNQVKDNLEKAIEQRNEL-----------KDSLAI 61 Query: 61 YREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIK 120 ++ + G+ ++ + + KY Y + NG+ W+GQGR P+VI Sbjct: 62 IKKYMDDAGVTAEDVYREFGKKLQTGRKNDSGESNKYRY-EYNGQIMYWSGQGRRPSVIA 120 Query: 121 KAMDEQGKSLDDFLIKQ 137 +A+ G SLDDFLI Q Sbjct: 121 EAIK-AGGSLDDFLISQ 136 >UniRef50_Q0VT26 DNA-binding protein H-NS n=2 Tax=Alcanivorax RepID=Q0VT26_ALCBS Length = 118 Score = 72.8 bits (177), Expect = 4e-12, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 16/122 (13%) Query: 20 ECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSL 79 + +++ LE+++++ E ++++R+ E A V E+ M G+ P +LL S Sbjct: 7 QLSVDELEKLIKQAESALDKKRKAELKNAQAVLEK---------MAKNLGVAPQDLLKSS 57 Query: 80 AAVKSGTKAKRAQ------RPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDF 133 K T+ A+ RPAK + D N TWTG+G+ P ++ A+ +G L+DF Sbjct: 58 TEKKKTTRKNAAKKKTGVRRPAKVKFRDPNNSGNTWTGRGKRPLWLQDALS-KGAKLEDF 116 Query: 134 LI 135 + Sbjct: 117 AV 118 >UniRef50_B8KVY0 H-NS histone family protein n=1 Tax=gamma proteobacterium NOR51-B RepID=B8KVY0_9GAMM Length = 137 Score = 72.0 bits (175), Expect = 6e-12, Method: Composition-based stats. Identities = 35/134 (26%), Positives = 55/134 (41%), Gaps = 12/134 (8%) Query: 10 NIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADG 69 + R A++ +L L+ + L ++ E E + R L++ + M+ G Sbjct: 8 SKTAARNAAKDLSLVELKSAIANLTAAA--KQIEVKEKTREDKRRAADLKKLQSMMKKLG 65 Query: 70 IDPNELLNSLAAVKSGTKAK--------RAQRPAKYSYVDENGETKTWTGQGRTPAVIKK 121 + +E + K R P KY + GET WTG+GRTP V ++ Sbjct: 66 VTASEAAELAGKKRKVATRKKSGKRSGKRGPVPPKYE-ITVAGETHQWTGRGRTPIVFRE 124 Query: 122 AMDEQGKSLDDFLI 135 M E G LD LI Sbjct: 125 FM-ENGGDLDSCLI 137 >UniRef50_Q46969 Microcin DNA binding protein n=8 Tax=Enterobacteriaceae RepID=Q46969_ECOLX Length = 171 Score = 65.4 bits (158), Expect = 6e-10, Method: Composition-based stats. Identities = 37/89 (41%), Positives = 51/89 (57%), Gaps = 1/89 (1%) Query: 6 KILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREML 65 + + NIR+LR ARE E L EM EKL VV+ ERRE+ AAE ER RK Q+ +++ Sbjct: 15 RTMMNIRSLRVFAREIDFEQLLEMQEKLNVVIEERREDAEREAAERAERERKRQELLQLI 74 Query: 66 IADGIDPNELLNSLAAVKSGTKAKRAQRP 94 +G P ELL L+ ++ K +P Sbjct: 75 AGEGFSPEELLG-LSEEAPKSRKKTLPKP 102 >UniRef50_A5UCH6 Acetolactate synthase 3 catalytic subunit n=1 Tax=Haemophilus influenzae PittEE RepID=A5UCH6_HAEIE Length = 122 Score = 63.5 bits (153), Expect = 2e-09, Method: Composition-based stats. Identities = 28/82 (34%), Positives = 43/82 (52%) Query: 1 MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQ 60 M+E ++ L N+R+LRA RE TLE E LEKL+ + E+R E+ ER +L + Sbjct: 1 MNELVRGLTNLRSLRAAVRELTLEQAENALEKLQTAIEEKRANEAELIKAETERKERLAK 60 Query: 61 YREMLIADGIDPNELLNSLAAV 82 Y+E++ + LA Sbjct: 61 YKELMEKKVLHLKNYTKFLAQK 82 >UniRef50_Q3J213 Histone-like nucleoid-structuring protein H-NS n=2 Tax=Rhodobacter sphaeroides RepID=Q3J213_RHOS4 Length = 131 Score = 61.2 bits (147), Expect = 9e-09, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 60/131 (45%), Gaps = 11/131 (8%) Query: 17 QARECTLETLEEMLEKLEVVVNERRE--EESAAAAEVEERTRKLQQYREMLIADGIDPNE 74 A+ L TLE++++ + + R EE+ A E E+ + +E++ + G + + Sbjct: 1 MAKTTGLPTLEDLVDVPRGDLLKLRANVEEALRANEAREKQAAKDKIKELVESSGFNLVD 60 Query: 75 LLNSLAAVKSGTKAKRAQRPAK--------YSYVDENGETKTWTGQGRTPAVIKKAMDEQ 126 L + GT + R +K Y ++TW+G+GR P ++ + E Sbjct: 61 LFGDMLPKSEGTGKRSYNRKSKDGEREPVAPKYRHPENPSETWSGRGRKPKWVEAHL-EA 119 Query: 127 GKSLDDFLIKQ 137 G +++D LI + Sbjct: 120 GGNMEDLLINK 130 >UniRef50_A1VWC2 Nucleoid protein H-NS n=2 Tax=Polaromonas naphthalenivorans CJ2 RepID=A1VWC2_POLNA Length = 114 Score = 60.8 bits (146), Expect = 1e-08, Method: Composition-based stats. Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 8/114 (7%) Query: 25 TLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNEL--LNSLAAV 82 TL++ +++ E +V E R++ ER + + +E++ G+ +L ++ Sbjct: 6 TLQQQIQEAEAIVKELRKQLDEE--RKGERMQAVASAKELIKTHGLTAADLGFSGKGSSA 63 Query: 83 KSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIK 136 K KR AKY + KTWTG+G++PA + + G + DDFLIK Sbjct: 64 KRPAGDKRGVVAAKYQDHESG---KTWTGRGKSPAWLAAQL-AAGYTKDDFLIK 113 >UniRef50_B9NXM2 Trans-acting regulatory protein HvrA n=1 Tax=Rhodobacteraceae bacterium KLH11 RepID=B9NXM2_9RHOB Length = 107 Score = 60.0 bits (144), Expect = 2e-08, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 55/116 (47%), Gaps = 12/116 (10%) Query: 21 CTLETLEEM-LEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSL 79 +++L L+KL + +R E + + L++ R + G+ +++ Sbjct: 3 IDIDSLNAADLKKLASKIEKRIVEVEKESLHLA-----LKEMRAVADKLGVAFEDVIAL- 56 Query: 80 AAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 K + + AKY+ + + ++TWTG+GR PA + A+ E GKS+DD I Sbjct: 57 --HKGKGRKPSTKATAKYA--NPDDPSQTWTGRGRKPAWVNAAL-EAGKSIDDLAI 107 >UniRef50_A1WU67 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Halorhodospira halophila SL1 RepID=A1WU67_HALHL Length = 124 Score = 58.1 bits (139), Expect = 8e-08, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 54/125 (43%), Gaps = 11/125 (8%) Query: 11 IRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGI 70 + T+R A E L++ R E+ E E R + Q+ +++ G+ Sbjct: 8 LETIRQAAEELDFVDLQKAS---------RMIEKEQKRREKEARKQAQQEMKQVAQKYGL 58 Query: 71 DPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSL 130 D +E+++ ++ K + P K + +TWTG+GR P + +E G+ + Sbjct: 59 DLDEIVSGVSKGAGAKATKGNKVPPK--FRHPEDPDRTWTGRGRKPKWVVHWEEELGRDI 116 Query: 131 DDFLI 135 ++ I Sbjct: 117 EELRI 121 >UniRef50_Q1QIY6 Histone-like nucleoid-structuring protein H-NS n=1 Tax=Nitrobacter hamburgensis X14 RepID=Q1QIY6_NITHX Length = 130 Score = 57.7 bits (138), Expect = 1e-07, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 10/115 (8%) Query: 21 CTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLA 80 L + EK+ V+ E+ AE E ++L Q +A +D +EL +L Sbjct: 9 MQFNELWRLHEKITKVLAEK------IVAEKRELEKRLAQLNRSDVASKVDASELSPALV 62 Query: 81 AVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 A S + K + KY + ++TW+G+G+TP A+ G+ +DDF I Sbjct: 63 AG-SPPRRKYPRVLPKYR--NPLSPSQTWSGRGKTPHWFANALKM-GRKIDDFRI 113 >UniRef50_Q84IJ5 DNA-binding protein n=1 Tax=Janthinobacterium sp. J3 RepID=Q84IJ5_9BURK Length = 109 Score = 57.4 bits (137), Expect = 1e-07, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 5/93 (5%) Query: 43 EESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDE 102 E + + ++ + +Q + G+ ELL + K ++ Q Y + Sbjct: 22 EREIKSRQHQDLQKAREQILAIAQEAGVSVEELLAAGGKKSKTGKGQKVQA----RYQNP 77 Query: 103 NGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 + ++TWTG+GR P I + + +GK+LDDF I Sbjct: 78 SDNSQTWTGRGRQPKWIAEGL-AKGKALDDFRI 109 >UniRef50_B5IYF2 H-NS histone family n=1 Tax=Octadecabacter antarcticus 307 RepID=B5IYF2_9RHOB Length = 108 Score = 56.2 bits (134), Expect = 3e-07, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 50/118 (42%), Gaps = 16/118 (13%) Query: 18 ARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLN 77 RE +L L+++ ++ + V R E + R + + G+ +E++ Sbjct: 7 LRELSLSKLKQLQKEAALAVATR---------ETQLRQEARAKLESVAAEYGLGLDEIMG 57 Query: 78 SLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 + K G + P Y + +TW+G+GR P + K + E G L ++LI Sbjct: 58 APTLNKGGKMSY----PPLYR--NPGDPEQTWSGRGRRPLWLLKLL-ETGHDLSEYLI 108 >UniRef50_A3SJ27 DNA-binding protein, H-NS family protein n=1 Tax=Roseovarius nubinhibens ISM RepID=A3SJ27_9RHOB Length = 104 Score = 56.2 bits (134), Expect = 3e-07, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 56/115 (48%), Gaps = 17/115 (14%) Query: 21 CTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLA 80 ++ L+EM ++++ + ++ E ER L + + M G + +EL++ + Sbjct: 7 MSVAELQEMRKEIDEQIARKKVE---------EREEVLAEMKAMAAKRGFEFSELVSGKS 57 Query: 81 AVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 K+ K P KY + ++TW+G+GR P I+ A+ +G ++DF I Sbjct: 58 KAKAKDK-----LPPKYR--NPKDASQTWSGRGRKPNWIQDAVK-KGAKIEDFAI 104 >UniRef50_Q2T3P5 H-NS histone family protein n=4 Tax=pseudomallei group RepID=Q2T3P5_BURTA Length = 99 Score = 56.2 bits (134), Expect = 3e-07, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 11/92 (11%) Query: 46 AAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGE 105 A A EE + + + R ++ GI P E+ A+ K ++ R+ KY Sbjct: 17 AEAMRREEASAVIAKLRAAILEFGITPAEVFG--ASAKQIRRSPRSPATQKYRDPLSGA- 73 Query: 106 TKTWTGQGRTPAVIKKAMDEQGKSLDDFLIKQ 137 TW+G+GR P I G++ DDFLI + Sbjct: 74 --TWSGRGRAPRWI------VGRNRDDFLIPR 97 >UniRef50_B7I346 DNA-binding protein H-NS n=18 Tax=Acinetobacter RepID=B7I346_ACIB5 Length = 108 Score = 56.2 bits (134), Expect = 3e-07, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 14/122 (11%) Query: 14 LRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPN 73 ++ E ++E L+ + E+ E ++ ++++ A Q E+ G Sbjct: 1 MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAY---------NQIIEIAENVGFSVE 51 Query: 74 ELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDF 133 +LL A + T K + Y ++N +TWTG+G+ P + + E+G L+DF Sbjct: 52 QLLEFGAQKRKKTTRKSVEP----RYRNKNNAEETWTGRGKQPRWLVAEI-EKGAKLEDF 106 Query: 134 LI 135 LI Sbjct: 107 LI 108 >UniRef50_Q47497 K12 plasmid DNA n=2 Tax=Enterobacteriaceae RepID=Q47497_ECOLX Length = 142 Score = 55.0 bits (131), Expect = 7e-07, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 54/126 (42%), Gaps = 5/126 (3%) Query: 7 ILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLI 66 I+ R A R+ E LE+++ + E+ EE+ +++ + Sbjct: 19 IMCERRKATAVLRKIPPENLEQLINMWSDIAQGMIEKFKEEQKATEEKAAATKRF---ME 75 Query: 67 ADGIDPNELLNSLAAV-KSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDE 125 I +E L + TK+K KY ++ +G++ TWTG+GR PA + D+ Sbjct: 76 EHNITADEALQIFENLFGPSTKSKSTFGKVKYR-IEVDGKSITWTGKGRRPAAFAEMSDD 134 Query: 126 QGKSLD 131 + K + Sbjct: 135 ELKKYE 140 >UniRef50_Q46693 KorB protein n=6 Tax=root RepID=Q46693_ECOLX Length = 101 Score = 54.7 bits (130), Expect = 1e-06, Method: Composition-based stats. Identities = 26/79 (32%), Positives = 32/79 (40%), Gaps = 9/79 (11%) Query: 57 KLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTP 116 K + + GI A G R RPAKY D TW+G GR P Sbjct: 32 KRPAWLTAKLDAGISLE------AMKMQGVANPREHRPAKYR--DPRNAENTWSGTGRRP 83 Query: 117 AVIKKAMDEQGKSLDDFLI 135 +K+ +D G SLDD I Sbjct: 84 TWLKELLD-SGLSLDDLKI 101 >UniRef50_Q47D23 Histone-like nucleoid-structuring protein H-NS n=1 Tax=Dechloromonas aromatica RCB RepID=Q47D23_DECAR Length = 105 Score = 54.3 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 45/116 (38%), Gaps = 15/116 (12%) Query: 20 ECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSL 79 T+ L ++ +++ + R E +E+ L + R G ELL Sbjct: 5 TLTVSQLRDLQQQIPAEIKRR---------EAQEKVNVLNELRAFAKTRGYAIEELLGKE 55 Query: 80 AAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 A VK+ T K K Y WTG+GR P + +A G +L+ L+ Sbjct: 56 AKVKAATGNK-----VKVKYRHPQNPELEWTGRGRKPKWV-EAWVANGATLESLLV 105 >UniRef50_B0RVJ3 DNA-binding protein n=20 Tax=Xanthomonadaceae RepID=B0RVJ3_XANCB Length = 155 Score = 53.9 bits (128), Expect = 1e-06, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 18/108 (16%) Query: 45 SAAAAEVEERTRKLQQYREML----IADGIDPNELLNSLAAV---------KSGTKAKRA 91 + V + + + R L A G EL + A+ K G +A R Sbjct: 20 AKKQQTVVAKRAPIAKVRTQLTRAAKAQGYSIEELFGAAASAGPGRPAAAGKPGPRAGRK 79 Query: 92 --QRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIKQ 137 + KY + +TWTG+G+ P + + + GK ++DFLIK+ Sbjct: 80 LGKVAPKYR--NPANAQETWTGRGKQPRWLAE-LTAAGKKVEDFLIKK 124 >UniRef50_C4AUA6 H-NS histone family protein n=4 Tax=pseudomallei group RepID=C4AUA6_BURMA Length = 271 Score = 53.9 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 43/111 (38%), Gaps = 10/111 (9%) Query: 27 EEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGT 86 E M LE+ A A E L++ R + G+ P ++ + + G Sbjct: 171 ENMSTYLELKAKADEILRQAEEARRSELETVLKEVRTRVAEYGLTPEQVFGARRG-RRGQ 229 Query: 87 KAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIKQ 137 + + KY TW+G+GR P IK GK + FLI+Q Sbjct: 230 QVHASPTVPKYRDPKTGA---TWSGRGREPGWIK------GKKRERFLIQQ 271 >UniRef50_B9Z6W8 Histone family protein nucleoid-structuring protein H-NS n=5 Tax=Neisseriaceae RepID=B9Z6W8_9NEIS Length = 101 Score = 53.9 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 10/93 (10%) Query: 43 EESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDE 102 E E EE+ + +Q E+ A G+ E+L + R AKY Sbjct: 19 ENEIKRREHEEKAKAKKQIVELARAYGLSVEEVLGKVGPA-------RKPVEAKY--CHP 69 Query: 103 NGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 TWTG+GR P +++ + GK+L+D I Sbjct: 70 QNPELTWTGRGRKPLWVQELL-AAGKNLEDLAI 101 >UniRef50_A1B6U3 Histone family protein nucleoid-structuring protein H-NS n=6 Tax=Rhodobacteraceae RepID=A1B6U3_PARDP Length = 105 Score = 53.9 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 42/115 (36%), Gaps = 18/115 (15%) Query: 21 CTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLA 80 +L L+++ + L + + A A E G EL Sbjct: 9 LSLAELKQLEKNLTKAIASFEDRRKAEARAAAEAVA---------KEHGFSLGELAEM-- 57 Query: 81 AVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 KRA KY TW+G+GR PA I A+ E GKSL+DF I Sbjct: 58 ----TPAQKRAAVAPKYR--HPENPEITWSGRGRKPAWIAGAL-EAGKSLEDFAI 105 >UniRef50_A9AS00 Histone family protein nucleoid-structuring protein H-NS n=6 Tax=Burkholderiaceae RepID=A9AS00_BURM1 Length = 128 Score = 53.5 bits (127), Expect = 2e-06, Method: Composition-based stats. Identities = 28/88 (31%), Positives = 37/88 (42%), Gaps = 11/88 (12%) Query: 50 EVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTW 109 + E + RE + GI P +L A SGT RA KY TW Sbjct: 52 RIAELESIIATIREQIAEYGITPEQLFGRRRAPASGT---RAPVAPKYRDPKTGA---TW 105 Query: 110 TGQGRTPAVIKKAMDEQGKSLDDFLIKQ 137 +G+G+ P I A K+ D FLI+Q Sbjct: 106 SGRGKAPHWIANA-----KNRDRFLIEQ 128 >UniRef50_A2SFJ3 Nucleoid protein H-NS n=3 Tax=Burkholderiales Genera incertae sedis RepID=A2SFJ3_METPP Length = 115 Score = 53.1 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 42/110 (38%), Gaps = 12/110 (10%) Query: 34 EVVVNERREEESAAAAEVEERTRK---LQQYREMLIADGIDPNELLNSLAAVKSGTKAKR 90 + ER+ E R + + + ++ GI +L S + VK AK Sbjct: 10 QKAALERQAAALTEQIETARRAEHSAVIARIKALMDEHGITLADLGRSKSPVKPAKAAKT 69 Query: 91 A-----QRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 + KY TW+G+G P +K A+ G+ +++F + Sbjct: 70 GGTAGRKVAVKYRNTATG---DTWSGRGLQPNWLKAAL-ASGRKIEEFSV 115 >UniRef50_Q2SV21 DNA-binding protein BprA n=4 Tax=Burkholderia RepID=Q2SV21_BURTA Length = 111 Score = 52.0 bits (123), Expect = 6e-06, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 48/116 (41%), Gaps = 16/116 (13%) Query: 20 ECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSL 79 E ET +E+ +L+ V E+A A E ++ R+ ++ GI ++ Sbjct: 3 ELNPETFQELRARLKSV------AEAAEIARKREAADAIKVIRKTVLQYGISAEDIFGR- 55 Query: 80 AAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 A G +R KY + TW+G+GR P I G++ D FLI Sbjct: 56 ARPNGGRGKRRGPAAPKYCNPETGA---TWSGRGRPPQWI------AGRNRDRFLI 102 >UniRef50_C5CUL7 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Variovorax paradoxus S110 RepID=C5CUL7_VARPS Length = 114 Score = 51.6 bits (122), Expect = 7e-06, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 10/118 (8%) Query: 22 TLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSL-- 79 TL + ++K + + + R++ +ER ++ R + G+ ++L S Sbjct: 4 TLADINSQIKKYDEQIAQLRKQAEDL--RNQERAGVIEDVRRKIAEYGLTASDLKLSARG 61 Query: 80 AAVKSGTKAKRAQRPAKYSYVDENGETKTWT-GQGRTPAVIKKAMDEQGKSLDDFLIK 136 +VK + AKY GE TW+ G+GR P + +A+ GKSL +F IK Sbjct: 62 GSVKRSAGVPAVKAAAKYR--GPTGE--TWSGGRGRKPRWVTEAL-AAGKSLSEFEIK 114 >UniRef50_Q1Q9B9 Nucleoid protein H-NS n=2 Tax=Psychrobacter RepID=Q1Q9B9_PSYCK Length = 121 Score = 51.6 bits (122), Expect = 8e-06, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 51/121 (42%), Gaps = 21/121 (17%) Query: 26 LEEMLEKLEVV------VNERREEESAAAAEVEERTRKL-----QQYREMLIADGIDPNE 74 +E + K V+ V+E R A + ++ + Q+ ++ E Sbjct: 11 VENTMNKSNVIDLNSLNVDELRAITENAQQLIAQKQHQRLYDAYTQFEKIAEESNASIEE 70 Query: 75 LLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFL 134 +L + + +R KY + + + +TWTG+GR P + +A+ G+ L+DF Sbjct: 71 ILQA-------GEKLEKKRSIKYR--NTDNDEETWTGRGRKPTWLVEAL-AAGRRLEDFA 120 Query: 135 I 135 I Sbjct: 121 I 121 >UniRef50_A1VUA7 Histone-like nucleoid-structuring protein H-NS n=1 Tax=Polaromonas naphthalenivorans CJ2 RepID=A1VUA7_POLNA Length = 99 Score = 51.6 bits (122), Expect = 8e-06, Method: Composition-based stats. Identities = 26/108 (24%), Positives = 46/108 (42%), Gaps = 11/108 (10%) Query: 29 MLEKLEVVVNERRE-EESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTK 87 M L+ ++ ER ++ + E R + ++ G+ N+L +S + K K Sbjct: 1 MSNTLQELLAERDALDQRIKELQAEARLEAISNVLSLIDRHGLKENDLFSSGTSTKK-NK 59 Query: 88 AKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 + PAKY + E W+G+G P ++ GK D+LI Sbjct: 60 YSATKVPAKYRDSETGSE---WSGRGIPPVWLR------GKDKKDYLI 98 >UniRef50_C7RP80 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RP80_9PROT Length = 106 Score = 51.6 bits (122), Expect = 9e-06, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 42/105 (40%), Gaps = 6/105 (5%) Query: 34 EVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNEL-LNSLAAVKSGTKAKRAQ 92 E++V E+ +E + Q ++++ G+ + + R Sbjct: 6 ELLVQRAELEKQIEETRSQEVAAAVVQAKQLIAEYGLTAADCGFKLTPSAAQMAGKTRTP 65 Query: 93 RPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIKQ 137 KY NGE TW+G+G+ P + + G+ +DFL+ + Sbjct: 66 VAVKYR--GPNGE--TWSGRGKAPNWLTSLV-AHGRDKNDFLVHK 105 >UniRef50_Q13SX0 HNS-like transcriptional regulator n=24 Tax=Burkholderiales RepID=Q13SX0_BURXL Length = 100 Score = 51.2 bits (121), Expect = 9e-06, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 45/113 (39%), Gaps = 19/113 (16%) Query: 23 LETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAV 82 L+ + KL+ E R E + R+ + G+ +L ++AA Sbjct: 4 YADLKAQIAKLQAQAEEARRTEIDNV---------IADIRQKIAEYGLTAQDLGFAVAAK 54 Query: 83 KSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 + K+A PAKY TW+G+G+ P I GK+ + FLI Sbjct: 55 RGRP-PKKAPLPAKYQDPKSG---NTWSGRGKPPKWI------VGKNRERFLI 97 >UniRef50_A3V571 DNA-binding protein, H-NS family n=4 Tax=Rhodobacteraceae RepID=A3V571_9RHOB Length = 119 Score = 51.2 bits (121), Expect = 9e-06, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 5/97 (5%) Query: 39 ERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYS 98 +R+ E++ ++R L + G E+ A + G ++ PAKY Sbjct: 28 KRQVEKAMVDVAEKDRKAALAAAEKAAADHGFSLAEITGM--APRKGKTGPKSSAPAKYR 85 Query: 99 YVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 + ++TWTG+GR PA K A+ G S + I Sbjct: 86 --NPTDISQTWTGKGRQPAWFKDALS-NGTSPEAMEI 119 >UniRef50_D1UME5 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Burkholderia sp. CCGE1001 RepID=D1UME5_9BURK Length = 108 Score = 51.2 bits (121), Expect = 1e-05, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 42/103 (40%), Gaps = 5/103 (4%) Query: 22 TLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAA 81 LETL+ E L+ + + + + +V E+ + + R + A I +EL Sbjct: 3 DLETLKAQREILQAQLAD--IDNTIRVHQVAEKVQMIAAIRLKMAAYNITLDELRGEPTK 60 Query: 82 VKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMD 124 + + P +Y + TW+G+GR P I + D Sbjct: 61 PRHAAAKGKGTVPVRYRNPETG---DTWSGRGRRPKWITASAD 100 >UniRef50_Q606Z8 Putative regulator protein n=1 Tax=Methylococcus capsulatus RepID=Q606Z8_METCA Length = 112 Score = 50.8 bits (120), Expect = 1e-05, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 49/107 (45%), Gaps = 5/107 (4%) Query: 30 LEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAK 89 ++L+ +++ ++ ER L+Q E+ G+ + + + + + Sbjct: 10 AQELQSLID--AATKALKEKLESERREYLRQMNELASKAGVRFQIIEDLSKGGGAPSTRR 67 Query: 90 RAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIK 136 A+ PAKY + + + W+G+G P ++ + QG+ + +F IK Sbjct: 68 GAKVPAKYQ--NPHNPAEKWSGRGVKPRWLQAFL-AQGRDIKEFEIK 111 >UniRef50_Q5NWF8 Predicted histone-like nucleoid-structuring protein n=2 Tax=Aromatoleum aromaticum EbN1 RepID=Q5NWF8_AZOSE Length = 127 Score = 50.4 bits (119), Expect = 2e-05, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 39/99 (39%), Gaps = 5/99 (5%) Query: 41 REEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAK---- 96 R ++ + + L++ +++ G+ +E++ S + PAK Sbjct: 17 RIDKEIGKRQSASKAVVLRKLQKLAREHGLSLDEVMASPVFATPRKARSKTAAPAKAPLP 76 Query: 97 YSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 + N W+G+GR P ++ + G SLD + Sbjct: 77 VKFRHPNNRELAWSGRGRKPHWVEAWL-ANGGSLDALAV 114 >UniRef50_Q8VTF2 LEE encoded regulator n=28 Tax=Enterobacteriaceae RepID=Q8VTF2_ECOLX Length = 129 Score = 50.4 bits (119), Expect = 2e-05, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 12/109 (11%) Query: 28 EMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTK 87 +++E++EV+ E + V E +K Y I EL + + Sbjct: 21 QLIEQIEVLQQEAKRLPEQEIQSVIESIQKQTTY------YNITLQELGYTNVPDDGLAR 74 Query: 88 AKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIK 136 ++R Y +E G +TW+G GR P +K+A+ G +DFL+K Sbjct: 75 RNSSKRVY---YRNEEG--QTWSGVGRQPRWLKEAL-LNGMKKEDFLVK 117 >UniRef50_Q3JI76 H-NS histone family protein n=107 Tax=Burkholderiaceae RepID=Q3JI76_BURP1 Length = 173 Score = 50.0 bits (118), Expect = 2e-05, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 43/111 (38%), Gaps = 10/111 (9%) Query: 27 EEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGT 86 E M LE+ A A E L++ R + G+ P ++ + + G Sbjct: 73 ENMSTYLELKAKADEILRQAEEARRSELETVLKEVRTRVAEYGLTPEQVFGARRG-RRGQ 131 Query: 87 KAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIKQ 137 + + KY TW+G+GR P IK GK + FLI+Q Sbjct: 132 QVHASPTVPKYRDPKTGA---TWSGRGREPGWIK------GKKRERFLIQQ 173 >UniRef50_A6GS13 Predicted histone-like nucleoid-structuring protein n=1 Tax=Limnobacter sp. MED105 RepID=A6GS13_9BURK Length = 109 Score = 50.0 bits (118), Expect = 2e-05, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 40/87 (45%), Gaps = 2/87 (2%) Query: 37 VNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAK 96 + + + + + + + +++ +++ + G+ EL L K K KR PA Sbjct: 14 LQQLKSDIEKELNDRSSKLQAIEEVKKLAASKGLKLEELFAELGGSK--PKGKRELGPAP 71 Query: 97 YSYVDENGETKTWTGQGRTPAVIKKAM 123 + + TW+G+G+ P +K+AM Sbjct: 72 VRFRHPQDASLTWSGRGKRPNWMKEAM 98 >UniRef50_B6JG92 H-NS histone family n=4 Tax=Bradyrhizobiaceae RepID=B6JG92_OLICO Length = 125 Score = 50.0 bits (118), Expect = 2e-05, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 50/116 (43%), Gaps = 13/116 (11%) Query: 21 CTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLA 80 ++ L E++ ++ ER ++ E+EER L + R D L Sbjct: 11 MPIDDLWSFHERISKILAER---ITSEKQELEERLAVLNRGRNAFGGD-------LAHSL 60 Query: 81 AVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIK 136 + + K + KY + ++TW+G+G+ P + A+ G+ +DDF I+ Sbjct: 61 DSNNKVRRKYPRVFPKYR--NPAAPSETWSGRGKQPRWLVAAIK-SGRKIDDFRIR 113 >UniRef50_B5J712 H-NS histone family n=1 Tax=Octadecabacter antarcticus 307 RepID=B5J712_9RHOB Length = 113 Score = 49.6 bits (117), Expect = 3e-05, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 58/123 (47%), Gaps = 11/123 (8%) Query: 14 LRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPN 73 ++ + + + LE++ ++ + + E A A E+ K A G Sbjct: 1 MKTDLKYMSRKELEKLSADIDKAMAKLANREKALAVVAVEKIAK---------AHGFTLA 51 Query: 74 ELLNSLAAVKSGTKAKRAQRPAKY-SYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDD 132 EL +S +VK +K ++ Q+ A +V+ + KTWTG+GR P K+A+ GK+ D+ Sbjct: 52 ELGDSKPSVKLASKPRKKQKQASAPKFVNLDDNAKTWTGKGRQPDWFKQAL-AAGKTPDE 110 Query: 133 FLI 135 I Sbjct: 111 MAI 113 >UniRef50_A0Y514 DNA-binding protein, H-NS family n=2 Tax=Alteromonadales RepID=A0Y514_9GAMM Length = 100 Score = 49.6 bits (117), Expect = 3e-05, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 49/110 (44%), Gaps = 19/110 (17%) Query: 12 RTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGID 71 + +RA + +L LE+ + + +++ +++ A + ++L G+ Sbjct: 2 KEVRAFIKTASLTELEKAQQLVTDAISKYTQQQKAKQ-----------EVLDLLKEKGLT 50 Query: 72 PNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKK 121 +L ++ A KR + AKY ++ +GE WTG+GR P + Sbjct: 51 LEDLQDTSAD-------KRTKVKAKYR-IEVDGEIIEWTGRGRRPKAFEN 92 >UniRef50_C9NQ13 Putative uncharacterized protein n=1 Tax=Vibrio coralliilyticus ATCC BAA-450 RepID=C9NQ13_9VIBR Length = 79 Score = 49.6 bits (117), Expect = 3e-05, Method: Composition-based stats. Identities = 29/86 (33%), Positives = 39/86 (45%), Gaps = 9/86 (10%) Query: 1 MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQ 60 MS L L ++R LRA R +LE LE L L+ VV E R ER L Sbjct: 1 MSNQLATLRHVRRLRACLRSLSLEELEVALSNLQTVVQEHRT---------REREAALAS 51 Query: 61 YREMLIADGIDPNELLNSLAAVKSGT 86 E + G+ +E+L L A+ S + Sbjct: 52 IVERIRCSGLSVDEILTGLKALTSRS 77 >UniRef50_C6QA05 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QA05_9RHIZ Length = 115 Score = 49.6 bits (117), Expect = 3e-05, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 5/95 (5%) Query: 41 REEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYV 100 R +++ A A ER ++ ++ G EL A G ++ AKY+ Sbjct: 26 RVKKALAMARDRERMEIKKRVADLAETHGFSVAELFG--GARGRGPGKTKSVGVAKYA-- 81 Query: 101 DENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 + + TWTG+GR P + + + +G L DF I Sbjct: 82 NPENKLDTWTGRGRKPNWVVERL-RKGAKLADFEI 115 >UniRef50_B2SWM9 Histone family protein nucleoid-structuring protein H-NS n=7 Tax=Burkholderia RepID=B2SWM9_BURPP Length = 100 Score = 49.3 bits (116), Expect = 4e-05, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 9/104 (8%) Query: 34 EVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQR 93 E++ + E+ A+ E L + ++ + GI +EL AA + RA Sbjct: 6 ELLAQREKLEKQIEEAKSREYAEVLNEIKQKMTDYGISLSELGGGRAAKGAKAARPRAGV 65 Query: 94 PAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIKQ 137 KY D TW+G+G+ P I G + FLI++ Sbjct: 66 APKYRDPDSG---STWSGRGKPPRWI------AGLDREKFLIEK 100 >UniRef50_B0RKN1 Histone-like nucleoid-structuring protein H-NS n=2 Tax=Yersinia RepID=B0RKN1_YEREN Length = 138 Score = 49.3 bits (116), Expect = 4e-05, Method: Composition-based stats. Identities = 26/136 (19%), Positives = 61/136 (44%), Gaps = 9/136 (6%) Query: 3 EALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYR 62 + + LN + + R T + + ++ + V+ + +E + ER K+++ Sbjct: 11 DVSQFLNQLTRRKKVLRLMTADQINILISDAKAVLEDVIADEDIKKRQEAERQTKIREAA 70 Query: 63 EMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKA 122 +L +GI ++L + + +S T + NG+ + G GR V+K Sbjct: 71 ILLRNEGIGLDDLEKHMVSRRSPTVEPKTYL--------INGKKIIYKGSGRMNKVLKAI 122 Query: 123 MDEQGKS-LDDFLIKQ 137 +D++G L+ +L+++ Sbjct: 123 VDKEGHDALEKYLVRE 138 >UniRef50_D0KXX3 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KXX3_HALNC Length = 107 Score = 49.3 bits (116), Expect = 4e-05, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 47/100 (47%), Gaps = 4/100 (4%) Query: 37 VNERREEESAAAAEVEER-TRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPA 95 + R+ + A + +R +++ R+ N + L ++ +K + PA Sbjct: 11 AEDLRQLMANAERTLRDRHQQRVHSLRKEAEELAASLNMSVAELFGLEKSSKLANKKLPA 70 Query: 96 KYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 KY ++ +TWTG+G+ P + A+ +G+SL+ F + Sbjct: 71 KY--INPANPAQTWTGRGKRPHWLADAL-ARGESLEKFAV 107 >UniRef50_A9C2A8 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Delftia acidovorans SPH-1 RepID=A9C2A8_DELAS Length = 104 Score = 48.9 bits (115), Expect = 5e-05, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 3/85 (3%) Query: 44 ESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDEN 103 E E + LQ ++ + A G+ E+ + V+ T + PAKY N Sbjct: 18 ERIKVGEAMAKKEALQNAKDSMTAAGLTDAEIAAHFSKVRKPTGVSGMKVPAKYRDRATN 77 Query: 104 GETKTWTGQGRTPAVIKKAMDEQGK 128 TWTG+G+ P + + G Sbjct: 78 A---TWTGRGKAPTWFNQERVQGGH 99 >UniRef50_P42505 Trans-acting regulatory protein hvrA n=4 Tax=Rhodobacteraceae RepID=HVRA_RHOCA Length = 102 Score = 48.5 bits (114), Expect = 7e-05, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 18/115 (15%) Query: 21 CTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLA 80 +L L+ + K++ + E ++ + E+ G E+L + Sbjct: 6 LSLNELKALRSKVDRAI---------VTYEERKKKEAFAELDEIARKMGYPLAEILTMVE 56 Query: 81 AVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 T A AKY+ + ++TWTG+GR P ++ A+ GKSL+D I Sbjct: 57 TKPRKTVA------AKYA--NPANPSETWTGRGRKPKWVEAAL-ASGKSLEDLTI 102 >UniRef50_A2SNQ2 Nucleoid protein H-NS n=1 Tax=Methylibium petroleiphilum PM1 RepID=A2SNQ2_METPP Length = 114 Score = 48.1 bits (113), Expect = 9e-05, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 14/105 (13%) Query: 41 REEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAK---- 96 + ++ A A E + + RE + + ++L K G A R++ P K Sbjct: 15 KLQQEAEAIRQREIQGVVARIREAIEHYQLTASDL--GFGGPKRGRGAARSKVPVKGKAK 72 Query: 97 -----YSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIK 136 + D NG + WTG GR P A+ G + + +K Sbjct: 73 PAVGRVRFRDANGNS--WTGHGRRPKWFVDAI-AAGATPESLSVK 114 >UniRef50_B2JR07 Histone family protein nucleoid-structuring protein H-NS n=12 Tax=Burkholderia RepID=B2JR07_BURP8 Length = 112 Score = 48.1 bits (113), Expect = 9e-05, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 11/85 (12%) Query: 51 VEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWT 110 +R + R + GI+ ++L ++A + K R Y GE TW+ Sbjct: 3 ERKRDSMVAYLRRRMAEVGIELDDLAAAIAEDQVRQKTAR--------YRSATGE--TWS 52 Query: 111 GQGRTPAVIKKAMDEQGKSLDDFLI 135 G G P +K+A+ G+S+D F + Sbjct: 53 GDGEMPQWLKQAIS-AGQSMDHFAV 76 >UniRef50_C5SD38 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5SD38_CHRVI Length = 98 Score = 47.7 bits (112), Expect = 1e-04, Method: Composition-based stats. Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 14/98 (14%) Query: 39 ERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYS 98 +R +E A R + ++Q ++ + P +L +S K+ +KA P KY Sbjct: 14 KRLLDEKIENARKAARGQAIEQALSLITTFQLTPEDLFSSTKKGKAKSKA-----PPKYR 68 Query: 99 YVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIK 136 + KTWTG+G P+ +K K+ DD+LI+ Sbjct: 69 DPETG---KTWTGRGPIPSWLKD------KNRDDYLIE 97 >UniRef50_B3EGE6 Putative uncharacterized protein n=1 Tax=Chlorobium limicola DSM 245 RepID=B3EGE6_CHLL2 Length = 125 Score = 47.7 bits (112), Expect = 1e-04, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 51/115 (44%), Gaps = 17/115 (14%) Query: 22 TLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAA 81 T+ L+E L ++ ++E+R + + + + + + I +EL Sbjct: 28 TITELQEQLVAIQRQIDEQRA---------LGKKQAIGEIKAKMAEFDITVDEL-----E 73 Query: 82 VKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIK 136 K ++ R ++P+ Y + E TW G+G P +K ++ G + D+L++ Sbjct: 74 SKGSSRGFREKKPSVIKYRKSDAE--TWVGRGPKPVWVKD-VEAAGGKISDYLVQ 125 >UniRef50_D1UM70 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Burkholderia sp. CCGE1001 RepID=D1UM70_9BURK Length = 283 Score = 47.7 bits (112), Expect = 1e-04, Method: Composition-based stats. Identities = 23/100 (23%), Positives = 41/100 (41%), Gaps = 8/100 (8%) Query: 30 LEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAK 89 LE L+ + + + + A A ++ T + + R+++ G+ ++ + K + Sbjct: 4 LENLQAKIAKLQAQ--AEAIVKKDSTAVIAKIRDIMDKHGLTVADIDAHIGGGKKRGRKP 61 Query: 90 RAQRPAK-----YSYVDENGETKTWTGQGRTPAVIKKAMD 124 + AK Y D TWTG GR P I A D Sbjct: 62 GVKTVAKSSASTVKYRDPK-TGATWTGHGRAPVWIANAKD 100 >UniRef50_C6BPP4 Histone family protein nucleoid-structuring protein H-NS n=6 Tax=Ralstonia RepID=C6BPP4_RALP1 Length = 103 Score = 47.3 bits (111), Expect = 1e-04, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 11/111 (9%) Query: 26 LEEMLEKLEVVVNERREEESAAAAEVE-ERTRKLQQYREMLIADGIDPNELLNSLAAVKS 84 + + +V + +E + A ER+ LQ+ RE + E + K Sbjct: 1 MASTQSSYKDIVKQIQELQKQADKLKAAERSTALQEVREQI-----SVFEFTAAELGFKG 55 Query: 85 GTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 + P +Y + + TWTG+G P +K A+ E G L+DFL+ Sbjct: 56 KASLAGKKVPTRYK----DDKGNTWTGRGHRPGWLKAAI-ESGAKLEDFLV 101 >UniRef50_Q1GMN5 Histone-like nucleoid-structuring protein H-NS n=11 Tax=Rhodobacterales RepID=Q1GMN5_SILST Length = 106 Score = 47.3 bits (111), Expect = 1e-04, Method: Composition-based stats. Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 7/96 (7%) Query: 40 RREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSY 99 + E++ AE+ ERT L+ + G +E+L+ A A++++ KY Sbjct: 18 KDVEKALKDAELRERTEALKAAEQAAAEYGFSLDEVLSGPA----KGAARKSKASPKYR- 72 Query: 100 VDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 + +TWTG+GR P + A+ G + D I Sbjct: 73 -NPENPDETWTGRGRKPHWVHTALS-NGVDISDLEI 106 >UniRef50_B4SKF4 Histone family protein nucleoid-structuring protein H-NS n=3 Tax=Stenotrophomonas RepID=B4SKF4_STRM5 Length = 139 Score = 47.3 bits (111), Expect = 1e-04, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 37/99 (37%), Gaps = 8/99 (8%) Query: 42 EEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAA-----VKSGTKAKRAQRPAK 96 E+ + + + + G EL A + + + + AK Sbjct: 21 EQRKQLISSRRPASAVRRMLKAAAAEAGYTLEELFGGEANEEAAPRRKPARRRTGKVAAK 80 Query: 97 YSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 Y D + TW+G+GR P + + ++G + DFLI Sbjct: 81 YR--DPEYKRLTWSGRGRMPRWLASKV-QKGHKVTDFLI 116 >UniRef50_A3X1Q3 Regulator protein, putative n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3X1Q3_9BRAD Length = 121 Score = 47.3 bits (111), Expect = 1e-04, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 50/120 (41%), Gaps = 26/120 (21%) Query: 21 CTLETLEEMLEKLEVVVN-----ERREEESAAAAEVEERTRKLQQYREMLIADGIDPNEL 75 T++ L ++ E++ V++ E+RE E A E+ Sbjct: 19 MTVDELWQLHEEIGRVLSVRLTSEKRELEKRLAQLRGEKGASR----------------- 61 Query: 76 LNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 + + + K + AKY + N +TW+G+G+ P + + G+S+D+F+I Sbjct: 62 -SGAETDAARERRKYPRVVAKYQ--NPNEPMETWSGRGKVPRWLAAELK-SGRSIDEFVI 117 >UniRef50_B3DCX2 DNA-binding protein H-NS n=24 Tax=Burkholderia RepID=B3DCX2_BURM1 Length = 110 Score = 47.3 bits (111), Expect = 2e-04, Method: Composition-based stats. Identities = 32/113 (28%), Positives = 48/113 (42%), Gaps = 14/113 (12%) Query: 26 LEEMLEKLEVVVNERRE-EESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKS 84 + +ML +E + + RE A + +E+ L RE + GI ELL + K Sbjct: 1 MNDMLTDIEALQAQLREVNARLAEVKRDEKRAALDAIREQVALYGISEEELLLAAGFRKP 60 Query: 85 GTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIKQ 137 + AKY Y G K W+G G P + GK+LDD+ I + Sbjct: 61 RKRR----TSAKY-YDPSTG--KEWSGFGPRPKWL------VGKNLDDYRIDR 100 >UniRef50_A1VV25 Histone family protein nucleoid-structuring protein H-NS n=3 Tax=Polaromonas naphthalenivorans CJ2 RepID=A1VV25_POLNA Length = 135 Score = 47.0 bits (110), Expect = 2e-04, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 47/118 (39%), Gaps = 18/118 (15%) Query: 32 KLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAA---------- 81 KL + E +++ + R + + RE + A GI EL + Sbjct: 10 KLNQQIAELQKKSEELKKKN--RPVVVAELRERMAAYGITAQELTRPVPKARMLKEDFAT 67 Query: 82 --VKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIKQ 137 K K + PAK+ D E W+G+G P + + EQG S D+FLI + Sbjct: 68 PIKAVKGKIKSSPLPAKFRSPDGKNE---WSGRGMAPKWMNTLI-EQGHSRDEFLISK 121 >UniRef50_A4X023 Putative uncharacterized protein n=1 Tax=Rhodobacter sphaeroides ATCC 17025 RepID=A4X023_RHOS5 Length = 132 Score = 47.0 bits (110), Expect = 2e-04, Method: Composition-based stats. Identities = 24/116 (20%), Positives = 40/116 (34%), Gaps = 21/116 (18%) Query: 20 ECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSL 79 + E LE + ++ + + A A R + G EL + Sbjct: 38 TLSREELEALQAEVAAAIATLERQRKAQAQAELARRAR---------ELGFTLRELTGTS 88 Query: 80 AAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 P + Y + +TW G+GR P +KAM G++ +D LI Sbjct: 89 ELA-----------PWELRYANPANVNQTWCGRGRKPRWFEKAM-AAGRTPEDMLI 132 >UniRef50_B5S5D9 Histone-like nucleoid-structuring protein h-ns; n=5 Tax=Ralstonia RepID=B5S5D9_RALSO Length = 83 Score = 47.0 bits (110), Expect = 2e-04, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 34/89 (38%), Gaps = 10/89 (11%) Query: 45 SAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENG 104 +R + + + G+ +L +PA Y++ NG Sbjct: 2 KEGQQPDPDREAAIDWIHDQMETYGLTVEDLRALGCFDA-------PPKPAAPVYMNANG 54 Query: 105 ETKTWTGQGRTPAVIKKAMDEQGKSLDDF 133 + W G G P +++A++ G+S++ F Sbjct: 55 --QVWDGTGPMPDWLQRAVN-AGQSIEHF 80 >UniRef50_A1WX44 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Halorhodospira halophila SL1 RepID=A1WX44_HALHL Length = 115 Score = 47.0 bits (110), Expect = 2e-04, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 6/97 (6%) Query: 39 ERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYS 98 E+R + + ++ R + GI E L+ L ++ + P KY Sbjct: 23 EKRVAKERKRRDRSRIEEAEREIRLVAAKYGIKLEEALSDLNGRTGPSRR---RVPPKYR 79 Query: 99 YVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 + TW+G+GRTP I++ ++QG S ++ I Sbjct: 80 --HPHDPDTTWSGRGRTPRWIQEW-EQQGGSREELRI 113 >UniRef50_A9IZ20 Trans-acting regulatory protein n=12 Tax=Proteobacteria RepID=A9IZ20_BART1 Length = 95 Score = 46.6 bits (109), Expect = 2e-04, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 49/118 (41%), Gaps = 27/118 (22%) Query: 18 ARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLN 77 + + L+EM ++++ + +R+ +E A + E+ GID +L++ Sbjct: 4 LKNMNFDELQEMRIQIDMELKKRQAKEKQNARR---------KILEIANTHGIDIADLVS 54 Query: 78 SLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 Y + N + + W G+GR P IK+ + E G +LD+ + Sbjct: 55 KER-----------------HYRNPNNQWELWNGRGRRPKWIKEWL-ENGYTLDELEV 94 >UniRef50_A4JS72 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Burkholderia vietnamiensis G4 RepID=A4JS72_BURVG Length = 112 Score = 46.6 bits (109), Expect = 2e-04, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 39/104 (37%), Gaps = 14/104 (13%) Query: 33 LEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQ 92 L ++ + AA ER + Q + ++ + +L + S KR Sbjct: 17 LALIAQRESLDAQIIAARKAEREVAIGQIKALMKEFDLSVLDLQERVQKRNS----KRMS 72 Query: 93 RPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIK 136 KY + KTW+G+GR PA + G FLI+ Sbjct: 73 TVPKYR---DPATGKTWSGRGRQPAWL-------GNDPAAFLIQ 106 >UniRef50_Q3IVA4 DNA-binding protein, H-NS family n=10 Tax=Rhodobacterales RepID=Q3IVA4_RHOS4 Length = 104 Score = 46.6 bits (109), Expect = 3e-04, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 47/118 (39%), Gaps = 19/118 (16%) Query: 18 ARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLN 77 ++ +LE L+E+ ++ + A E + L+Q + G + EL Sbjct: 6 LKDLSLEELKELRVEIAQAIT---------AQERHCKQEALEQLQAKARQLGFNLEELAP 56 Query: 78 SLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 ++ +R Q A Y + + W G+GR P +AM GKS ++ I Sbjct: 57 AM---------QRGQVGAMLRYANPANPGEVWRGRGRKPRWFTQAM-AAGKSPEELQI 104 >UniRef50_A3U3K4 HNS family histone-like protein n=2 Tax=Oceanicola batsensis HTCC2597 RepID=A3U3K4_9RHOB Length = 109 Score = 46.2 bits (108), Expect = 3e-04, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 9/69 (13%) Query: 69 GIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGK 128 G N+L SG R P KY + TW+G+GR P K+ + +G Sbjct: 48 GFSLNDLTG------SGGGRGRKVNPPKYR--HPENDALTWSGRGRQPDWYKEQVS-KGT 98 Query: 129 SLDDFLIKQ 137 + +D LI + Sbjct: 99 APEDLLIVK 107 >UniRef50_Q3IVA3 Histone-like nucleoid-structuring protein H-NS n=2 Tax=Rhodobacter sphaeroides RepID=Q3IVA3_RHOS4 Length = 105 Score = 46.2 bits (108), Expect = 3e-04, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 46/115 (40%), Gaps = 18/115 (15%) Query: 21 CTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLA 80 +++ L+ + ++ ++ E R L + E G +EL + Sbjct: 9 LSIKELKNLQTQVAKAIS---------TFEERRRKEALSELEEKARELGFSLSELTGTAL 59 Query: 81 AVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 +RA KY+ + + +TW+G+GR P +A+ GK+ +D I Sbjct: 60 T------RQRAGAAPKYA--NPDQPEQTWSGRGRKPHWFVEAL-AAGKTAEDLQI 105 >UniRef50_A3VE67 Histone-like nucleoid-structuring protein H-NS n=4 Tax=Rhodobacterales RepID=A3VE67_9RHOB Length = 114 Score = 46.2 bits (108), Expect = 3e-04, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 56/124 (45%), Gaps = 12/124 (9%) Query: 14 LRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPN 73 ++ + + + LE++ +E + + +EE AA + E+ K + G + Sbjct: 1 MKFNLKGMSRKELEKLKADVEKALEKVGDEEKRAALQAAEKAAK---------SFGYSLD 51 Query: 74 ELLNSLAAVKSGTKAKRAQRPAKY--SYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLD 131 EL + ++ AK + AK Y + + TWTG+GR P ++ + E+G +L+ Sbjct: 52 ELSDVKPVKRAPKAAKSSDGRAKVAPKYRNPDDANMTWTGRGRKPKWVEAHL-EKGGTLE 110 Query: 132 DFLI 135 I Sbjct: 111 QIAI 114 >UniRef50_UPI00016A8021 histone family protein nucleoid-structuring protein H-NS n=1 Tax=Burkholderia oklahomensis C6786 RepID=UPI00016A8021 Length = 112 Score = 46.2 bits (108), Expect = 3e-04, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 14/111 (12%) Query: 30 LEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKA- 88 + +LE + E R+ A E+ + Q E++ G+ P+EL S + Sbjct: 11 IAELEQKLKELRKAADEQLA--REKASIIGQINELIAKYGVSPHELAFPKTTKGSKASSS 68 Query: 89 ---KRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIK 136 K KY TWTG+G+ PA I+ A + D+FLI+ Sbjct: 69 KFQKGTPGKPKYRDPKTGA---TWTGKGKPPAWIRDAANR-----DEFLIQ 111 >UniRef50_B2UAC6 Histone family protein nucleoid-structuring protein H-NS n=7 Tax=Burkholderiaceae RepID=B2UAC6_RALPJ Length = 95 Score = 46.2 bits (108), Expect = 3e-04, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 9/90 (10%) Query: 44 ESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDEN 103 ES+ AA + R + R + G+ +L A +RA A+Y + Sbjct: 11 ESSPAAMLRRRAEAIAWVRMQIARYGLAYADL----TAAGCFPPLRRASSKARYR----S 62 Query: 104 GETKTWTGQGRTPAVIKKAMDEQGKSLDDF 133 E +TW G+G P +++A++ G+S + F Sbjct: 63 AEGQTWDGEGDMPDWLQRAVN-AGQSPEHF 91 >UniRef50_B1KCC1 Histone family protein nucleoid-structuring protein H-NS n=4 Tax=Burkholderia RepID=B1KCC1_BURCC Length = 113 Score = 46.2 bits (108), Expect = 3e-04, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 57/121 (47%), Gaps = 22/121 (18%) Query: 17 QARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELL 76 Q + T+ L++ L L ++V E R +E+ KL++ E + I ELL Sbjct: 3 QMKSPTIRELQKQLGHLNLIVEEAR---------QKEKKIKLEEIAEQVKLFDITEIELL 53 Query: 77 NSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIK 136 + VK A R + AKY D ++W+G+G P + GK+LDD+LI+ Sbjct: 54 RAAGFVK----ANRQKASAKYYDPDTG---RSWSGKGARPKWL------TGKNLDDYLIR 100 Query: 137 Q 137 + Sbjct: 101 E 101 >UniRef50_A6D5D9 DNA-binding protein H-NS n=1 Tax=Vibrio shilonii AK1 RepID=A6D5D9_9VIBR Length = 151 Score = 45.8 bits (107), Expect = 4e-04, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 54/139 (38%), Gaps = 7/139 (5%) Query: 3 EALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYR 62 E IL+N R + L +E ++ KL ER++EE A +E +++ Sbjct: 10 ELSSILSNKRKTASVLGRIELAKIETVIAKLSTYHQERKDEEKAQREALENTQSAIEEVL 69 Query: 63 EMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKT------WTGQGRTP 116 + ++L + + K K++ + D E + W G G P Sbjct: 70 SKTGLSWDEVSKLAETQVSKKPVRHKKKSSNAVNATSNDSQNEARYKDGECEWDGTGEQP 129 Query: 117 AVIKKAMDEQGKSLDDFLI 135 IK+ + E G L +F + Sbjct: 130 KWIKERL-EMGFELKEFEV 147 >UniRef50_C1D8I9 Putative DNA segregation ATPase FtsK/SpoIIIE-like protein n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D8I9_LARHH Length = 290 Score = 45.8 bits (107), Expect = 5e-04, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%) Query: 76 LNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDD 132 ++G +A A+R + + + TW+G+GR PA +++ +DE G SL D Sbjct: 224 HEQQEEERAGREAATARRESTIRFRHPQNQDMTWSGRGRKPAWVQEWLDE-GGSLAD 279 >UniRef50_Q0AEM4 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Nitrosomonas eutropha C91 RepID=Q0AEM4_NITEC Length = 100 Score = 45.4 bits (106), Expect = 5e-04, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 15/103 (14%) Query: 37 VNERREEESAAAAEVEE--RTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQRP 94 ++E+ A E+ E R L++ + + G NEL S ++ K + Sbjct: 10 IDEQIAALQARKKELLENKRKEVLKEIKRAIQIYGFTVNELGLSGSSKKRQPR------- 62 Query: 95 AKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIKQ 137 Y + N +TW G G P +K+ M +G L+D LIK+ Sbjct: 63 ----YANPNDPDQTWGG-GARPKWLKEYM-ARGGKLEDCLIKK 99 >UniRef50_Q5NZI5 HNS-like transcription regulator protein n=11 Tax=Betaproteobacteria RepID=Q5NZI5_AZOSE Length = 112 Score = 45.4 bits (106), Expect = 6e-04, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 36/97 (37%), Gaps = 8/97 (8%) Query: 43 EESAAAAEVEERTR---KLQQYREMLIADGIDPNEL-LNSLAAVKSGTKAKRAQRPAKYS 98 E AE + + R+ + + +L + A + KR AKY Sbjct: 12 EALKQQAEEMRQAEIAGVIADIRQKISDYNLSAADLGFGAPARGEKPAAGKRGTVKAKYR 71 Query: 99 YVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 W+G+G P +K + E GK+ + FLI Sbjct: 72 NPAAGAS---WSGRGVMPKWLKAEL-EAGKAKEAFLI 104 >UniRef50_B2AJ99 Histone-like nucleoid-structuring protein H-NS n=17 Tax=Burkholderiaceae RepID=B2AJ99_CUPTR Length = 104 Score = 45.4 bits (106), Expect = 6e-04, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 14/108 (12%) Query: 34 EVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVK----SGTKAK 89 E++ ++ E A E ++Q R+++ + P ++ + + + + Sbjct: 6 ELIAQKQAIEAQLEEARASEVASVIEQIRDLMAQYDLLPEDVAPRRRRGRPVGAASAQRE 65 Query: 90 RAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIKQ 137 +A P KY KTW+G+GR PA + GK + FLI Q Sbjct: 66 KAPLPPKYMDPKTA---KTWSGRGRAPAWL-------GKRPERFLIPQ 103 >UniRef50_Q2CI47 DNA-binding protein, H-NS family protein n=1 Tax=Oceanicola granulosus HTCC2516 RepID=Q2CI47_9RHOB Length = 100 Score = 45.4 bits (106), Expect = 6e-04, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 5/84 (5%) Query: 39 ERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYS 98 +R + +ER L+ + G +EL + A K + + P KY Sbjct: 10 KRDIDRQLEKLAKDERKLALEAAEKAAREHGYSLSELTAAGGAKKGKSGS---VNPPKYR 66 Query: 99 YVDENGETKTWTGQGRTPAVIKKA 122 + + +TWTG+GR P IK A Sbjct: 67 --NPDNPDQTWTGKGRRPDWIKAA 88 >UniRef50_A8LSF2 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Dinoroseobacter shibae DFL 12 RepID=A8LSF2_DINSH Length = 105 Score = 45.0 bits (105), Expect = 8e-04, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 19/102 (18%) Query: 22 TLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAA 81 L LE+ + K + + ++R E+ A E+ + G+ ++L+S Sbjct: 12 DLTALEKDIAKAKATLEKKRIAEARKAMEMAAK------------EYGMTVEDVLSSGPD 59 Query: 82 VKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAM 123 KSG K AKY+ + +TWTG+GR P ++A+ Sbjct: 60 RKSGQKG-----VAKYA--NPANPDQTWTGRGRQPTWYREAI 94 >UniRef50_A1TLA4 Histone family protein nucleoid-structuring protein H-NS n=6 Tax=cellular organisms RepID=A1TLA4_ACIAC Length = 99 Score = 44.6 bits (104), Expect = 9e-04, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 47/116 (40%), Gaps = 21/116 (18%) Query: 20 ECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSL 79 + + L + E+LE +NE R E + + Q R ++ G+ ++ S Sbjct: 5 NTSYKELLKQREQLEQQINEAR---------RRELSDAIAQVRSLVSEYGLKAEDVFPSG 55 Query: 80 AAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 A + K A KY +TWTG+G+ P I+ G++ + F I Sbjct: 56 RARSASAGTKVAP---KYRNPATG---QTWTGRGKAPKWIQ------GENREQFAI 99 >UniRef50_C9Y8W0 Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9Y8W0_9BURK Length = 100 Score = 44.6 bits (104), Expect = 9e-04, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 42/108 (38%), Gaps = 9/108 (8%) Query: 29 MLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKA 88 M + L+++ + E A +E + ++ + ++ + ++ S + + Sbjct: 1 MSKLLDLIAQKETLEAQIAEIREKEFAKAIEDVKALVSQYKLTAEDVFGSSSRGQKAVPK 60 Query: 89 KRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIK 136 + AKY +TW+G+G P + GK D+ IK Sbjct: 61 TSTKVAAKYRDPLTG---RTWSGRGLAPKWL------AGKDKADYAIK 99 >UniRef50_Q3JY88 H-NS histone family protein n=47 Tax=Betaproteobacteria RepID=Q3JY88_BURP1 Length = 125 Score = 44.6 bits (104), Expect = 0.001, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 37/102 (36%), Gaps = 10/102 (9%) Query: 34 EVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQR 93 +++ + E+ A+ E L ++ + G EL RA Sbjct: 34 DLLAQREKLEKQIEEAKSREYAEVLSDVKQKIADYGFTLAEL-GLGRGKAGKAGRPRAGV 92 Query: 94 PAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 AKY + TW+G+G+ P I GK+ + F I Sbjct: 93 AAKYRDPESGA---TWSGRGKPPRWI------AGKNREQFAI 125 >UniRef50_B3EGH4 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Chlorobium limicola DSM 245 RepID=B3EGH4_CHLL2 Length = 97 Score = 44.6 bits (104), Expect = 0.001, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 52/114 (45%), Gaps = 20/114 (17%) Query: 22 TLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAA 81 T+ L+ + ++ +NE++ + L + GI +E+ + Sbjct: 3 TIAELQAQMASIQKQINEQKA---------AGKRDALADILSKMNEFGITIHEIQRRIVP 53 Query: 82 VKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 VK+ +A + KY D KTW+G+G+ P +K ++E+G LDD+L+ Sbjct: 54 VKA-----KAAKTVKYRLED-----KTWSGKGKKPKWVKN-IEERGGRLDDYLV 96 >UniRef50_A3NU43 H-NS histone family protein n=24 Tax=pseudomallei group RepID=A3NU43_BURP0 Length = 114 Score = 44.6 bits (104), Expect = 0.001, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 33/92 (35%), Gaps = 15/92 (16%) Query: 44 ESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDEN 103 A + + + Q ++ GI P EL A A R K Y + Sbjct: 16 AEIEALRRKAKAAAIMQIELLMTQYGISPGELKGVDGAP--------AHRKPKARYWNPE 67 Query: 104 GETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 +TW+G+GR P + G+ L LI Sbjct: 68 -TGQTWSGRGRMPKWL------VGRELASHLI 92 >UniRef50_A3NFL1 H-NS histone family protein n=28 Tax=pseudomallei group RepID=A3NFL1_BURP6 Length = 101 Score = 44.6 bits (104), Expect = 0.001, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 49/117 (41%), Gaps = 19/117 (16%) Query: 21 CTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLA 80 T E L+ L+ L +E E+A A E+ L Q RE ++ I P+++ Sbjct: 2 ATYEELKAQLDALN------KEAEAAKAREIS---TALSQIRETVLRYEIRPDQIFPQWT 52 Query: 81 AVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIKQ 137 ++S K R P KY +TW G+GR P + G + FLI + Sbjct: 53 RLRSPDKR-RGPLPPKYRNPMTG---ETWCGRGRAPKWM------SGSPREVFLIDR 99 >UniRef50_A0B3N4 Histone family protein nucleoid-structuring protein H-NS n=38 Tax=Burkholderia RepID=A0B3N4_BURCH Length = 101 Score = 44.6 bits (104), Expect = 0.001, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 50/118 (42%), Gaps = 21/118 (17%) Query: 21 CTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLA 80 T L LE+L+ +++ RE+ A A + R + I P EL A Sbjct: 2 ATYRQLSAQLERLQQKIDKEREKAIADA---------IAHIRAKIDEYDITPEELGFRPA 52 Query: 81 AVKSGTKAKRAQR--PAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIK 136 + + +R P KY + GE TW+G+GR PA + GK+ FLIK Sbjct: 53 GSSTAAATAKPKRTLPPKY-LNPKTGE--TWSGRGRAPAWL-------GKNRGRFLIK 100 >UniRef50_Q472Y8 Putative DNA-binding protein H-NS n=1 Tax=Ralstonia eutropha JMP134 RepID=Q472Y8_RALEJ Length = 122 Score = 44.6 bits (104), Expect = 0.001, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 10/87 (11%) Query: 50 EVEERTRKLQQYREMLIADGIDPNEL-----LNSLAAVKSGTKAKRAQRPAKYSYVDENG 104 ER ++ + + G+ EL + + + Y N Sbjct: 3 AKTERADAIRWIQAQMDDYGLTLEELDAAGCFAPPPSPEPPPPSAPPAPVVCYR----NA 58 Query: 105 ETKTWTGQGRTPAVIKKAMDEQGKSLD 131 E TW GQG P+ +K+A++ G+SL+ Sbjct: 59 EGLTWDGQGEMPSWLKRAVN-AGQSLE 84 >UniRef50_B2JNN0 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Burkholderia phymatum STM815 RepID=B2JNN0_BURP8 Length = 239 Score = 44.6 bits (104), Expect = 0.001, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 47/121 (38%), Gaps = 23/121 (19%) Query: 30 LEKLEVVVNERREEESAAAAEVEERTR-KLQQYREMLIADGIDPNE-------------- 74 + LE++ ++ ++ A A + +R L Q RE++I G+ + Sbjct: 1 MATLEIIQARIKKLQTQAEALIAKRAHGALNQIRELMIKHGLTTEDIERRAKARRERSER 60 Query: 75 LLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFL 134 LL + A A + + P KY TW+G R PA IK K FL Sbjct: 61 LLGTKTARAKPATAAKGKLPPKYRDPKTGA---TWSGHARPPAWIKDV-----KDRSKFL 112 Query: 135 I 135 I Sbjct: 113 I 113 >UniRef50_Q0A759 Histone family protein nucleoid-structuring protein H-NS n=3 Tax=Ectothiorhodospiraceae RepID=Q0A759_ALHEH Length = 105 Score = 44.3 bits (103), Expect = 0.001, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 54/111 (48%), Gaps = 16/111 (14%) Query: 22 TLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAA 81 ++ L ++ ++ + +RR++++ A + + + G NEL+ + A Sbjct: 7 SVSELNKLKTDIDREIRQRRKQQAKEAQR---------ELKAVAEKYGFALNELVGN-AQ 56 Query: 82 VKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDD 132 SG KAK AK Y +KTW+G+GR P I + +++G+ +D+ Sbjct: 57 PASGQKAK-----AKAIYRHPEDPSKTWSGRGRRPRWINEW-EQKGRDIDE 101 >UniRef50_Q136M2 Histone-like nucleoid-structuring protein H-NS n=1 Tax=Rhodopseudomonas palustris BisB5 RepID=Q136M2_RHOPS Length = 139 Score = 44.3 bits (103), Expect = 0.001, Method: Composition-based stats. Identities = 21/116 (18%), Positives = 46/116 (39%), Gaps = 13/116 (11%) Query: 21 CTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLA 80 T++ L E+ E++ V+ + + + + + G + + Sbjct: 26 MTVDELWEIHERISQVLCSK-------IQSEQRKLDGHLSRLRLGVTSGANQQ---SDDE 75 Query: 81 AVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIK 136 + + + KY + + + TW G+G+ P + + GKS+DDFLI+ Sbjct: 76 SGPKPARRPYPKVYPKYRSLKDP--SLTWAGRGKQPLWLIDELK-SGKSIDDFLIR 128 >UniRef50_B5J2H6 H-NS histone family n=2 Tax=Octadecabacter antarcticus RepID=B5J2H6_9RHOB Length = 113 Score = 44.3 bits (103), Expect = 0.001, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 51/119 (42%), Gaps = 11/119 (9%) Query: 18 ARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLN 77 + + + LE++ + + + R+++ E+ + A G+ +++ Sbjct: 5 LKNMSRKELEKLASDVGKSLEKHRKKDLKKVRLEMEK---------LAAAHGVTVEDIMG 55 Query: 78 SLAAVKSGTKAKRAQRPAKYS-YVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 + A ++ K A + Y D ++KTWTG+GR P K A+ G++ + I Sbjct: 56 NKATTEATPKKAAAVKAKSAPKYADSADKSKTWTGKGRQPEWFKSAI-AAGQTPESMAI 113 >UniRef50_C4I5I2 H-NS histone family protein n=16 Tax=pseudomallei group RepID=C4I5I2_BURPS Length = 128 Score = 43.9 bits (102), Expect = 0.001, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 48/115 (41%), Gaps = 27/115 (23%) Query: 22 TLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAA 81 + + ++ ++ L+ ++ R+ SA LQ+ RE + G P E+ +S Sbjct: 34 SYQEYKQHVKTLQATLDRERKAISAKV---------LQEIRECIAEFGFTPQEVFSS--- 81 Query: 82 VKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVI----KKAMDEQGKSLDD 132 + +R KY Y +G TWTG GR P I +KA + DD Sbjct: 82 --------KKKREPKY-YDPVSGS--TWTGLGREPEWIRGKDRKAFELSSHQRDD 125 >UniRef50_Q13JE5 Histone-like nucleoid-structuring protein H-NS n=10 Tax=cellular organisms RepID=Q13JE5_BURXL Length = 298 Score = 43.9 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 46/117 (39%), Gaps = 16/117 (13%) Query: 23 LETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAV 82 + TLE++ +L ++ + A A ++ + L+ R ++ G+ ++ L + Sbjct: 55 VATLEQIQARL------KKLQAQAEAIVAKQSSAVLETIRGLMEKHGLTTKDIDAHLGSK 108 Query: 83 KSGTKAKRAQRPAKYS----YVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 K G KA Y D TWTG GR PA I D FLI Sbjct: 109 KRGPKAGAKAAAKTAKSVAKYRDPK-SGATWTGHGRAPAWIANVKDRA-----KFLI 159 >UniRef50_Q21SM3 Histone-like nucleoid-structuring protein H-NS n=2 Tax=Comamonadaceae RepID=Q21SM3_RHOFD Length = 123 Score = 43.5 bits (101), Expect = 0.002, Method: Composition-based stats. Identities = 29/136 (21%), Positives = 56/136 (41%), Gaps = 14/136 (10%) Query: 1 MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQ 60 MS+ ++I + I L+ QA + E + ++ ++ + + +++ + + Sbjct: 1 MSDLIEIQSQIEKLQKQASDI---KAREFGKTVQDILAKMQA-FGITLKDLQPGKARGAK 56 Query: 61 YREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIK 120 + G + A VK K+ P Y NGE W+G+G TP + Sbjct: 57 GKAKATKVG-------KAGAGVKPAGAPKKVALPVAAKYRGPNGEG--WSGRGLTPRWLT 107 Query: 121 KAMDEQGKSLDDFLIK 136 + GK+ +DF IK Sbjct: 108 ALL-VDGKTKEDFAIK 122 >UniRef50_UPI00016A3729 H-NS histone family protein n=4 Tax=Burkholderia ubonensis Bu RepID=UPI00016A3729 Length = 101 Score = 43.5 bits (101), Expect = 0.002, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 43/103 (41%), Gaps = 10/103 (9%) Query: 33 LEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQ 92 L++ R + A A E R +++ +++++ + P +L + +RA Sbjct: 5 LDLKAKIRTLQVQAELARKNEVQRVIEEIQKVIVEFDLKPEDLFADIQRKSRRV-RRRAP 63 Query: 93 RPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 AKY + W+G+GR P I G+ + FLI Sbjct: 64 ALAKYR---DPASGAVWSGRGRAPRWI------AGQDRESFLI 97 >UniRef50_A5EX59 Putative uncharacterized protein n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EX59_DICNV Length = 101 Score = 43.5 bits (101), Expect = 0.002, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 38/82 (46%), Gaps = 5/82 (6%) Query: 55 TRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGR 114 + ++ RE++ + +A + ++ ++RP K + + + +TW+G GR Sbjct: 25 KERKKRAREIIAEAQRQASRFAQDIAP--TVSRKTASKRPPK--FANPDNPEQTWSGMGR 80 Query: 115 TPAVIKKAMDEQGKSLDDFLIK 136 P K +D+ G + LIK Sbjct: 81 QPDWYKAYIDKGGNEKN-MLIK 101 >UniRef50_B0RRY7 Histone-like nucleoid-structuring protein n=13 Tax=Xanthomonas RepID=B0RRY7_XANCB Length = 193 Score = 43.5 bits (101), Expect = 0.002, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 38/111 (34%), Gaps = 20/111 (18%) Query: 28 EMLEKLEVVVNER-REEESAAAAEVEERTRKLQQ-------YREMLIADGIDPNE----- 74 KL+ + + + + E +E+T + + +L N Sbjct: 62 NTSSKLDSIAQAKAKLLDELQKLEEQEKTERASEASSAHATIVSLLEQFAGHFNTKQRND 121 Query: 75 ----LLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKK 121 L + A K K R++ KY G +TW+G+GRTP Sbjct: 122 IAAYLGTTTTARKDVVKTGRSEVRPKYELP---GTGETWSGRGRTPKAFAA 169 >UniRef50_B5EWD6 Putative uncharacterized protein n=1 Tax=Vibrio fischeri MJ11 RepID=B5EWD6_VIBFM Length = 87 Score = 43.1 bits (100), Expect = 0.003, Method: Composition-based stats. Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 1/76 (1%) Query: 1 MSEALKILNNIRTLRAQARE-CTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQ 59 M E K L N R+L AR T E + ++E+L + +R++EE + E R K+ Sbjct: 1 MKELKKTLLNQRSLINFARSMLTTEETQLIIERLSIYNTQRKQEEEKKQKDNEIRAEKMN 60 Query: 60 QYREMLIADGIDPNEL 75 Q+ + L +G+ +L Sbjct: 61 QFIQQLETEGLSITDL 76 >UniRef50_C5T058 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T058_ACIDE Length = 118 Score = 43.1 bits (100), Expect = 0.003, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 36/99 (36%), Gaps = 10/99 (10%) Query: 41 REEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAK---- 96 R + E+ + + +E + GI +L + K+G K + K Sbjct: 19 RLQNEREQLREAEKAGVVARMKEAVAYYGITAADLGLGVTTRKAGAKKASEAKAPKAGRV 78 Query: 97 ---YSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDD 132 Y D+ G W+G G P +A+ GK+ D Sbjct: 79 AGRIKYKDDAG--HAWSGYGPKPKWFTEAL-ASGKTEAD 114 >UniRef50_Q3JS38 H-NS histone family protein n=7 Tax=pseudomallei group RepID=Q3JS38_BURP1 Length = 102 Score = 42.3 bits (98), Expect = 0.004, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 34/94 (36%), Gaps = 15/94 (15%) Query: 43 EESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDE 102 E A + L + R + G +++ R + AKY Y Sbjct: 15 EARLADERRAAKEAVLTEIRACVDEFGFSLDDVFPPDGG------HGRRKVRAKY-YDPA 67 Query: 103 NGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIK 136 +G TW+G GR P I+ GK + F ++ Sbjct: 68 SGA--TWSGVGREPVWIR------GKDREQFELR 93 >UniRef50_B2AJM1 Putative uncharacterized protein n=3 Tax=Cupriavidus RepID=B2AJM1_CUPTR Length = 96 Score = 42.3 bits (98), Expect = 0.004, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 6/80 (7%) Query: 53 ERTRKLQQYREMLIADGIDPNEL-LNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTG 111 ER ++ + + G+ EL A A Y N E TW G Sbjct: 15 ERADAIRWIQAQMDDYGLTLEELDAAGCFAPPPPPPAAPPPPVVCYR----NAEGLTWDG 70 Query: 112 QGRTPAVIKKAMDEQGKSLD 131 QG P+ +K+A++ G+S++ Sbjct: 71 QGEMPSWLKRAVN-AGQSVE 89 >UniRef50_A4JUS0 Histone family protein nucleoid-structuring protein H-NS n=2 Tax=Burkholderia cepacia complex RepID=A4JUS0_BURVG Length = 113 Score = 42.3 bits (98), Expect = 0.005, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 43/119 (36%), Gaps = 19/119 (15%) Query: 21 CTLETLEEMLEKL----EVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELL 76 + L EK+ E++ E AA+ EER L++ + ++ E+ Sbjct: 3 VNINFLFTTGEKMSTFHELLAQRAALEAEIEAAKAEERLIALEEVKRLVDEFAFSTREVF 62 Query: 77 NSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 + KR +Y TW+G+GR+PA I GK F I Sbjct: 63 G------TSAVRKRQPVQPRYRDPATGA---TWSGRGRSPAWI------DGKDRSQFQI 106 >UniRef50_Q2KZ53 DNA-binding protein (Histone) n=5 Tax=Bordetella RepID=Q2KZ53_BORA1 Length = 120 Score = 42.3 bits (98), Expect = 0.005, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 47/116 (40%), Gaps = 18/116 (15%) Query: 34 EVVVNERREEESAAAAEVEERTRK--LQQYREMLIADGIDPNELLNSLAAVKSGTKAKRA 91 + + + A ++ R RK + + + I P E++ +L + K T+A Sbjct: 10 QAKIEKEISRLQKRAEALQTRRRKPVIASIVKSMREYNITPEEIIAALGSAK-STRAAAP 68 Query: 92 QRP-----------AKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIK 136 +R KY + +TW+G+G+ P + + G S D FLIK Sbjct: 69 RRKATSDGSKRAVAPKYLHPQTG---ETWSGRGKAPRWLVAE-EGNGASRDSFLIK 120 >UniRef50_D0KM80 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Pectobacterium wasabiae WPP163 RepID=D0KM80_PECWW Length = 107 Score = 41.9 bits (97), Expect = 0.005, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 40/102 (39%), Gaps = 3/102 (2%) Query: 35 VVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQRP 94 + SA V+ +++ RE ++ N L + + + Sbjct: 9 SAAELKNLIASAQDQLVKGERERIKAVREKILQLLEGENLELEQVFPNSKPSPRVKNPVA 68 Query: 95 AKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIK 136 KY+ + + TW+G+G+ P K+A+ GK+ + L+ Sbjct: 69 PKYA--HPDNPSLTWSGRGKQPNWFKEAL-AAGKTQEQLLLS 107 >UniRef50_A0KCC6 Histone family protein nucleoid-structuring protein H-NS n=18 Tax=Burkholderia cepacia complex RepID=A0KCC6_BURCH Length = 109 Score = 41.9 bits (97), Expect = 0.006, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 52/112 (46%), Gaps = 15/112 (13%) Query: 26 LEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSG 85 + + L++LE + R + A+ +E+ L ++E + GI E+L++L + Sbjct: 1 MTQALQELEAQL--RDLNIKLSEAKQKEKQAALAAFKEQVELLGISQQEVLSALGYIVQR 58 Query: 86 TKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIKQ 137 + PAKY Y G ++W+G+G P ++ GK L+ + + Sbjct: 59 KRKA----PAKY-YDPSTG--RSWSGRGPRPKWLE------GKDLETLAVDR 97 >UniRef50_A9BLZ8 Histone family protein nucleoid-structuring protein H-NS n=7 Tax=Burkholderiales RepID=A9BLZ8_DELAS Length = 98 Score = 41.9 bits (97), Expect = 0.006, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 41/93 (44%), Gaps = 5/93 (5%) Query: 29 MLEKLEVVVNERREEESAAAAEVEE-RTRKLQQYREMLIADGIDPNELLNSLAAVKSGTK 87 M + ++ ++ E E A ++ +T + + + M+ G+ ++ S A K Sbjct: 1 MTSDYKALLQQKAELEKKIDALIQHAKTDAIAEAKAMVQQYGLTKEDVFPS-AKSKPDKA 59 Query: 88 AKRAQRPAKYSYVDENGETKTWTGQGRTPAVIK 120 KR+ K+ + TWTG+G+ P I+ Sbjct: 60 GKRSVGEPKFRNPETGA---TWTGRGKPPKWIE 89 >UniRef50_Q3JFR1 H-NS histone family protein n=33 Tax=Burkholderiales RepID=Q3JFR1_BURP1 Length = 131 Score = 41.9 bits (97), Expect = 0.006, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 47/121 (38%), Gaps = 14/121 (11%) Query: 15 RAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNE 74 R +A E E + ++L +++ +++ A A E L R+ ++ G+ + Sbjct: 24 RKEAVESYGEMVMATYKELLAQLDDLKQQAKRARA--LELPDVLVGLRKKIVEYGLSQKD 81 Query: 75 LLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFL 134 L K A +Y D TWTG+GR PA I G+ + F Sbjct: 82 LFP---PRLGRPKKADALPKPRYRDPDTGA---TWTGRGRAPAWI------AGQDRERFR 129 Query: 135 I 135 I Sbjct: 130 I 130 >UniRef50_B1XWK6 Histone family protein nucleoid-structuring protein H-NS n=2 Tax=Burkholderiales Genera incertae sedis RepID=B1XWK6_LEPCP Length = 123 Score = 41.6 bits (96), Expect = 0.007, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 54/129 (41%), Gaps = 25/129 (19%) Query: 26 LEEMLEKLEVVVNE-RREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNS-LAAVK 83 + + L ++ + + +RE ++ A EV + + +E + + +L + +AAVK Sbjct: 1 MAKSLAQVNAQIAKLQREADALKAKEVAG---VVSRIKEAIAIYSLTSADLFDDAVAAVK 57 Query: 84 SGTKAKRAQRPA-----------------KYSYVDENGETKTWTGQGRTPAVIKKAMDEQ 126 + KR A + Y DE G TWTG G+ P K A+ E Sbjct: 58 PAARQKRTVAAAPVVGKKAPKAAAKKAESQIKYRDEAG--HTWTGHGKRPNWFKAAI-EA 114 Query: 127 GKSLDDFLI 135 GK +D + Sbjct: 115 GKKPEDLAV 123 >UniRef50_C8N836 Putative uncharacterized protein n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8N836_9GAMM Length = 102 Score = 41.6 bits (96), Expect = 0.009, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 5/81 (6%) Query: 55 TRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGR 114 +K ++ R++L + ++S K +R P +Y + + ++TW+G GR Sbjct: 27 KQKKRRARDILAEAQRQASRFISSAEGGK--PATQRTAMPPRYR--NPHNHSQTWSGMGR 82 Query: 115 TPAVIKKAMDEQGKSLDDFLI 135 P K+ + E G S D LI Sbjct: 83 QPQWFKENL-EHGMSEHDMLI 102 >UniRef50_A4JW45 Histone-like nucleoid-structuring protein H-NS n=1 Tax=Burkholderia vietnamiensis G4 RepID=A4JW45_BURVG Length = 101 Score = 41.2 bits (95), Expect = 0.011, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 45/117 (38%), Gaps = 21/117 (17%) Query: 19 RECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNS 78 R T + L L +L+V + + R ER R ++ E++ GI +L+ Sbjct: 5 RPTTYQRLLTELAELDVRIEQARA---------RERVRAIETIHELMDTYGIKHRDLVGR 55 Query: 79 LAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 + + PAKY + + W G+G P I+ GK FLI Sbjct: 56 NG---RRGSYQVSALPAKYR---DPATGREWCGRGNVPLWIR------GKDRTRFLI 100 >UniRef50_B1Z3P6 Histone family protein nucleoid-structuring protein H-NS n=13 Tax=Burkholderia cepacia complex RepID=B1Z3P6_BURA4 Length = 102 Score = 41.2 bits (95), Expect = 0.011, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 10/91 (10%) Query: 47 AAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGET 106 A + E + + R + G+ ++ T P Y D Sbjct: 19 EEARLAELDAVIDEIRSRVAEYGLTAGQIFGRHGGTAKATPRPSGSAP---RYRDPK-TG 74 Query: 107 KTWTGQGRTPAVIKKAMDEQGKSLDDFLIKQ 137 TW+G+GR P IK G + FLI++ Sbjct: 75 ATWSGRGREPRWIK------GGRRERFLIER 99 >UniRef50_B2JM34 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Burkholderia phymatum STM815 RepID=B2JM34_BURP8 Length = 191 Score = 41.2 bits (95), Expect = 0.011, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 44/109 (40%), Gaps = 13/109 (11%) Query: 21 CTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLA 80 TLE L+ ++KL+ A A ++ T L+ R ++ + ++ L Sbjct: 2 ATLEALQARIKKLQA---------QAEAIVSKKSTAALETIRALMAKHDLTTADIDAHLG 52 Query: 81 AVKSGT---KAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQ 126 K G K+ Q+ Y+D TWTG GR PA I A D Sbjct: 53 HKKRGRPALKSAGVQKKGVARYIDPK-TGATWTGHGRAPAWIAGAKDRS 100 >UniRef50_Q3JFX1 H-NS histone family protein n=27 Tax=Burkholderia RepID=Q3JFX1_BURP1 Length = 113 Score = 41.2 bits (95), Expect = 0.011, Method: Composition-based stats. Identities = 20/107 (18%), Positives = 42/107 (39%), Gaps = 14/107 (13%) Query: 30 LEKLEVVVNERREEESAAAAEVEERTRKLQQ-YREMLIADGIDPNELLNSLAAVKSGTKA 88 ++ ++ + + ++ E ++L Q E+L G+D +++N + Sbjct: 1 MKTYSELLAQWDDLKNEIDRAREREAQRLAQRVLELLAESGVDVRDMMNPRPRGQGRG-- 58 Query: 89 KRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 + KY TW+G+GR P + G++ FLI Sbjct: 59 --RRITPKYWNPQTGA---TWSGRGRMPKWL------IGQNPRQFLI 94 >UniRef50_A4JVX9 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Burkholderia vietnamiensis G4 RepID=A4JVX9_BURVG Length = 98 Score = 41.2 bits (95), Expect = 0.011, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 31/87 (35%), Gaps = 8/87 (9%) Query: 34 EVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQR 93 ++V + E AA + R L Q E++ I PNEL + Sbjct: 8 QLVAELKELERKIIAARAQARKDALAQIAELMYEFDIKPNEL-----RRPRNIRYNVQPT 62 Query: 94 PAKYSYVDENGETKTWTGQGRTPAVIK 120 +Y TW+G+G PA I Sbjct: 63 RPRYRDPVSGA---TWSGRGHVPAWIA 86 >UniRef50_B1TFR0 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Burkholderia ambifaria MEX-5 RepID=B1TFR0_9BURK Length = 111 Score = 40.8 bits (94), Expect = 0.014, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 33/75 (44%), Gaps = 13/75 (17%) Query: 61 YREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIK 120 +M+ G+D ++ + + + R + Y+D KTW+G+GR P ++ Sbjct: 47 IVKMMEVYGLDLEQIKDGVE------RQSSPHREVEPKYMDPQ-TGKTWSGRGRMPLWMR 99 Query: 121 KAMDEQGKSLDDFLI 135 K +D+L+ Sbjct: 100 D------KRKEDYLL 108 >UniRef50_A1KAI1 Putative trans-acting regulatory protein HvrA n=1 Tax=Azoarcus sp. BH72 RepID=A1KAI1_AZOSB Length = 119 Score = 40.8 bits (94), Expect = 0.015, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 45/110 (40%), Gaps = 18/110 (16%) Query: 39 ERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTK----------- 87 + R E R L++ ++M +G+ ++L+ S + K Sbjct: 15 QSRVEAEIRRRSDSARRDLLKKMQKMAADEGLSLSDLIGSAPVPATEKKPAAKRGRAAAG 74 Query: 88 AKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMD--EQGKSLDDFLI 135 K+ KY + + G W+G+GR P A+D QGKS+++ + Sbjct: 75 KKKEAPTVKYRHPETPGVG--WSGRGRKPQW---ALDWIAQGKSIEELAV 119 >UniRef50_A0B4Y5 Histone family protein nucleoid-structuring protein H-NS n=5 Tax=Burkholderia RepID=A0B4Y5_BURCH Length = 110 Score = 40.4 bits (93), Expect = 0.016, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 41/93 (44%), Gaps = 13/93 (13%) Query: 45 SAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENG 104 A +E+ L ++E + I E+L++L ++ + A + D + Sbjct: 19 ELARVRAQEKKAALAAFKEQVTLYDITQQEVLSALGYLQPKRRRAAA------QFYDPS- 71 Query: 105 ETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIKQ 137 ++W+G+G P + GK+LDD+ I + Sbjct: 72 SGRSWSGRGPRPKWL------VGKNLDDYRIDR 98 >UniRef50_A1K1V6 Putative trans-acting regulatory protein HvrA n=1 Tax=Azoarcus sp. BH72 RepID=A1K1V6_AZOSB Length = 132 Score = 40.0 bits (92), Expect = 0.021, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 45/121 (37%), Gaps = 19/121 (15%) Query: 18 ARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLN 77 + TL L + E+ ++ + +R L++ + A+G+ EL Sbjct: 5 LKSYTLPQLRALREQTARAID---------RLQRSQRETLLRRLSALARAEGLTLAELAE 55 Query: 78 SLAAVKSGTK-------AKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSL 130 AA+K + R P KY + W+G+GR P + + G S+ Sbjct: 56 DAAAMKGAERPRKHPRTTPRQPLPVKYR--HPSNRALAWSGRGRQPHWVAAWL-ANGGSM 112 Query: 131 D 131 D Sbjct: 113 D 113 >UniRef50_Q82UX8 H-NS histone family n=1 Tax=Nitrosomonas europaea RepID=Q82UX8_NITEU Length = 96 Score = 40.0 bits (92), Expect = 0.022, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 22/116 (18%) Query: 19 RECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNS 78 + T ++E ++KL+ NE R +E A + + + GI +L Sbjct: 2 KNLTYIEIQEEIKKLQKQANEIRAKEIADI---------IADIKVKIQLYGITEKDLGFG 52 Query: 79 LAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFL 134 K K+ P Y + +TW+G+GR P IK+ + E G +L++ L Sbjct: 53 E-------KQKKTIFPPLYKKGN-----RTWSGRGRQPGWIKEHL-EAGGNLEELL 95 >UniRef50_Q0AWY2 Site-specific recombinase, putative n=7 Tax=Clostridiales RepID=Q0AWY2_SYNWW Length = 551 Score = 40.0 bits (92), Expect = 0.023, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 33/65 (50%) Query: 7 ILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLI 66 +L++IR + A ARE E L+ + +K + ++ E + +R RKL + + L Sbjct: 378 LLDDIRRITAFAREHEDEFLQMVTQKTKSALDRSLRENKRELEQATQRIRKLDEIIQRLY 437 Query: 67 ADGID 71 D I+ Sbjct: 438 EDNIE 442 >UniRef50_A9C2K0 Histone family protein nucleoid-structuring protein H-NS n=4 Tax=Comamonadaceae RepID=A9C2K0_DELAS Length = 136 Score = 40.0 bits (92), Expect = 0.024, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 43/117 (36%), Gaps = 22/117 (18%) Query: 25 TLEEMLEKLEVVVNERREEESAAAAEVEERT-----RKLQQYREMLIADGIDPNELLNSL 79 L++ + + E ++A E+ + L + ++++ G ++ + Sbjct: 16 WLQKFRTPMTQSLKELLAAKAALDMEIAKARTSAADAALSKVQKLVTDFGFTQQQVFPYI 75 Query: 80 AAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIK 136 S PAKY TWTG+G+ P IK DDFLI+ Sbjct: 76 PEKTSA--------PAKYRDPATGA---TWTGRGKPPNWIKDQ------DRDDFLIE 115 >UniRef50_D2LRX8 Peptidase M23 n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LRX8_BACS4 Length = 417 Score = 39.6 bits (91), Expect = 0.032, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 1/81 (1%) Query: 28 EMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTK 87 ++ +L + +RRE +S +E++ ++ ++ EML ID + + S K+ K Sbjct: 185 DLESQLTSLEEQRRELQSLLQK-IEDKLQEKEEIVEMLEKQQIDVEDFIVSYEEEKTILK 243 Query: 88 AKRAQRPAKYSYVDENGETKT 108 + A A+ ++E+G KT Sbjct: 244 NQEAAAKAELKRLEEDGNKKT 264 >UniRef50_C9Y6P0 Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9Y6P0_9BURK Length = 109 Score = 39.2 bits (90), Expect = 0.038, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 42/113 (37%), Gaps = 8/113 (7%) Query: 21 CTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLA 80 + L+ +E+L R E AA V + K+++Y G ++ Sbjct: 3 TSYRDLKAQIEELTAKAEAARVSE--VAAVVADIKEKIEEYGLTASDLGFKTDKGTRKSV 60 Query: 81 AVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDF 133 ++ KY NGE W+G+GR P + K+LDD+ Sbjct: 61 GQAIAEANEKKSVEPKYK--GPNGEL--WSGRGRAPVWTQNL--PTDKTLDDY 107 >UniRef50_Q395B4 Histone-like nucleoid-structuring protein H-NS n=7 Tax=Burkholderiales RepID=Q395B4_BURS3 Length = 96 Score = 39.2 bits (90), Expect = 0.042, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 42/108 (38%), Gaps = 15/108 (13%) Query: 30 LEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAK 89 ++ L+ + E + AA ER L Q RE++ + E+ +AK Sbjct: 4 VQTLQAQLAEL--DRRIKAARSRERNAVLAQVRELVTGYALTAREIFG----QGYSDRAK 57 Query: 90 RAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIKQ 137 KY TW+G+GR PA I G+ FLI++ Sbjct: 58 LFTVGVKYRDPATGA---TWSGRGRAPAWI------VGRDRTAFLIRE 96 >UniRef50_C9CRV4 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Silicibacter sp. TrichCH4B RepID=C9CRV4_9RHOB Length = 107 Score = 38.9 bits (89), Expect = 0.049, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 39/95 (41%), Gaps = 6/95 (6%) Query: 40 RREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSY 99 ++ +E+ + L + E+ + +++ S AK Y Sbjct: 18 KQIDETLENKLKQNMKNALAEMVEVAKKHEVAFADVIEVYERRNSRKLAKVGL-----IY 72 Query: 100 VDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFL 134 + N ++TWTG+GR P + + + E G + DD L Sbjct: 73 RNPNNPSQTWTGKGRRPLWVLELLRE-GMTFDDML 106 >UniRef50_Q6Y661 BphA n=2 Tax=Burkholderia pseudomallei RepID=Q6Y661_BURPS Length = 126 Score = 38.5 bits (88), Expect = 0.060, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 40/102 (39%), Gaps = 15/102 (14%) Query: 34 EVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQR 93 E++ + R E+ A + +E R ++ RE++ GID + R Sbjct: 14 ELLAQKTRLEKEAENSRLEAEKRICERVREIMAEYGIDVEVRAGG------SKRETRRHA 67 Query: 94 PAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 +Y + +TW+G+G P I GK FL+ Sbjct: 68 VPRYWNPETG---QTWSGRGAEPKWI------VGKDRSRFLL 100 >UniRef50_Q5NX28 Histone-like nucleoid-structuring protein H-NS n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5NX28_AZOSE Length = 130 Score = 38.5 bits (88), Expect = 0.060, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 47/122 (38%), Gaps = 27/122 (22%) Query: 30 LEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAA-------- 81 L+KL V V + ++ + ++Q ++M G+D +E+L + + Sbjct: 12 LKKLSVAVQK-----ELDRRTLQSKKALIKQVQQMAAEHGLDADEMLAEVGSSGREGSSV 66 Query: 82 -----------VKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSL 130 K K+ + P Y + + W+G+GR P+ + + E G L Sbjct: 67 KSGAGKAAPGRKKKAPAVKKEKLPPVY--WNPVNAQEGWSGRGRKPSWVITFL-ENGGDL 123 Query: 131 DD 132 + Sbjct: 124 ES 125 >UniRef50_C4KW97 H-NS histone family protein n=28 Tax=pseudomallei group RepID=C4KW97_BURPS Length = 93 Score = 38.5 bits (88), Expect = 0.071, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 35/88 (39%), Gaps = 8/88 (9%) Query: 33 LEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQ 92 L+++ AA ++ R+ L + + ++ + E+ ++G +R + Sbjct: 5 LDLLAEREALMIKLDAARMQARSAALSEVKRIVEEFELTTQEVFG-----RAGVLRRRGK 59 Query: 93 RPAKYSYVDENGETKTWTGQGRTPAVIK 120 KY TW G+GR P+ I Sbjct: 60 LKPKYRDPKTGA---TWNGRGRPPSWIA 84 >UniRef50_B2TGU8 Histone family protein nucleoid-structuring protein H-NS n=4 Tax=Burkholderia RepID=B2TGU8_BURPP Length = 106 Score = 38.1 bits (87), Expect = 0.092, Method: Composition-based stats. Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 7/86 (8%) Query: 52 EERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTG 111 EE L+ R + G ++ A ++G K +A P + Y++ +TW+G Sbjct: 28 EEAAGVLEDIRAKVATYGFTERDVFGRKRATQNG-KKPQAGVPGEAKYLNPK-TGQTWSG 85 Query: 112 QGRTPAVIKKAMDEQGKSLDDFLIKQ 137 +GR PA I A K+ D FLI + Sbjct: 86 RGRAPAWIVSA-----KNRDRFLIAK 106 >UniRef50_Q3JS54 BphA n=11 Tax=Burkholderia pseudomallei RepID=Q3JS54_BURP1 Length = 151 Score = 37.7 bits (86), Expect = 0.100, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 36/101 (35%), Gaps = 16/101 (15%) Query: 35 VVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQRP 94 + + + E+E + E+ ++ RE++ GID R P Sbjct: 41 LALQTKLEKEVENSRLEAEKRIC-ERVREIMAEYGIDAEVRAGGGRRETRRRAVPRYWNP 99 Query: 95 AKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 E G +TW+G+G P I GK FL+ Sbjct: 100 -------ETG--QTWSGRGGEPKWI------VGKDRSQFLL 125 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q5E4C0 Global DNA-binding transcriptional dual regulato... 145 3e-34 UniRef50_P0ACG0 DNA-binding protein H-NS n=266 Tax=Gammaproteoba... 141 6e-33 UniRef50_P43841 DNA-binding protein H-NS homolog n=25 Tax=Gammap... 130 2e-29 UniRef50_P0A1S5 DNA-binding protein stpA n=131 Tax=Gammaproteoba... 127 1e-28 UniRef50_Q65SY1 Hns protein n=2 Tax=Pasteurellaceae RepID=Q65SY1... 125 5e-28 UniRef50_B0UTX9 Histone family protein nucleoid-structuring prot... 123 2e-27 UniRef50_Q07ZH5 Histone family protein nucleoid-structuring prot... 122 3e-27 UniRef50_A6FD06 DNA-binding protein H-NS n=1 Tax=Moritella sp. P... 122 3e-27 UniRef50_A4SUA6 Histone-like nucleoid structuring protein n=3 Ta... 122 3e-27 UniRef50_Q6AQT8 Related to DNA-binding protein H-NS n=1 Tax=Desu... 122 4e-27 UniRef50_B2VAY7 Heat-stable nucleoid-structuring protein n=1 Tax... 122 4e-27 UniRef50_Q5QW35 Histone-like protein n=2 Tax=Idiomarina RepID=Q5... 117 9e-26 UniRef50_B2VB46 H-NS protein n=1 Tax=Erwinia tasmaniensis RepID=... 117 1e-25 UniRef50_B5EWF6 H-NS histone family n=2 Tax=Enterobacteriaceae R... 115 3e-25 UniRef50_A7FCL2 DNA-binding protein H-NS n=1 Tax=Yersinia pseudo... 114 9e-25 UniRef50_Q2BK75 DNA-binding protein Hns n=1 Tax=Neptuniibacter c... 112 4e-24 UniRef50_A7JSK3 DNA-binding protein H-NS n=2 Tax=Mannheimia haem... 112 4e-24 UniRef50_Q15TX2 Histone-like nucleoid-structuring protein H-NS n... 111 8e-24 UniRef50_Q2NQ66 DNA-binding protein n=1 Tax=Sodalis glossinidius... 108 6e-23 UniRef50_A2UW01 Histone-like nucleoid-structuring protein H-NS n... 106 2e-22 UniRef50_Q663D4 DNA-binding protein n=1 Tax=Yersinia pseudotuber... 106 3e-22 UniRef50_UPI0000E0F9F2 DNA-binding protein, H-NS family n=1 Tax=... 105 4e-22 UniRef50_B2TSE7 DNA-binding protein H-NS family n=5 Tax=Enteroba... 103 3e-21 UniRef50_C9Q4L7 Putative uncharacterized protein n=1 Tax=Vibrio ... 102 3e-21 UniRef50_Q70W58 DNA binding protein n=1 Tax=Yersinia enterocolit... 97 1e-19 UniRef50_C7BHB8 Dna-binding protein h-ns (Histone-like protein h... 97 1e-19 UniRef50_B1VJ65 HN-S family DNA-binding protein n=3 Tax=Enteroba... 97 1e-19 UniRef50_B1LDK0 H-NS histone family protein n=5 Tax=Enterobacter... 96 4e-19 UniRef50_Q2C8B2 Putative DNA-binding protein H-NS n=2 Tax=Photob... 93 3e-18 UniRef50_B4TM78 DNA binding protein n=2 Tax=Salmonella enterica ... 92 7e-18 UniRef50_Q28U97 Trans-acting regulatory protein hvrA n=2 Tax=Jan... 90 2e-17 UniRef50_Q3J213 Histone-like nucleoid-structuring protein H-NS n... 88 1e-16 UniRef50_A6VTC1 Histone family protein nucleoid-structuring prot... 87 1e-16 UniRef50_A4NZJ0 Acetolactate synthase 3 catalytic subunit n=1 Ta... 85 5e-16 UniRef50_C4AUA6 H-NS histone family protein n=4 Tax=pseudomallei... 85 5e-16 UniRef50_A1WU67 Histone family protein nucleoid-structuring prot... 83 3e-15 UniRef50_Q1QIY6 Histone-like nucleoid-structuring protein H-NS n... 83 3e-15 UniRef50_Q3JI76 H-NS histone family protein n=107 Tax=Burkholder... 81 1e-14 UniRef50_B5IYF2 H-NS histone family n=1 Tax=Octadecabacter antar... 81 1e-14 UniRef50_A9AS00 Histone family protein nucleoid-structuring prot... 80 2e-14 UniRef50_C7RP80 Histone family protein nucleoid-structuring prot... 80 3e-14 UniRef50_A1VWC2 Nucleoid protein H-NS n=2 Tax=Polaromonas naphth... 79 3e-14 UniRef50_D1UME5 Histone family protein nucleoid-structuring prot... 79 5e-14 UniRef50_A9M4Q2 DNA-binding protein n=1 Tax=Vibrio sp. 23023 Rep... 78 8e-14 UniRef50_Q13SX0 HNS-like transcriptional regulator n=24 Tax=Burk... 77 1e-13 UniRef50_B2SWM9 Histone family protein nucleoid-structuring prot... 77 1e-13 UniRef50_B9Z6W8 Histone family protein nucleoid-structuring prot... 77 1e-13 UniRef50_Q2SV21 DNA-binding protein BprA n=4 Tax=Burkholderia Re... 77 2e-13 UniRef50_C5CUL7 Histone family protein nucleoid-structuring prot... 77 3e-13 UniRef50_B9NXM2 Trans-acting regulatory protein HvrA n=1 Tax=Rho... 76 3e-13 UniRef50_Q47497 K12 plasmid DNA n=2 Tax=Enterobacteriaceae RepID... 76 3e-13 UniRef50_Q0VT26 DNA-binding protein H-NS n=2 Tax=Alcanivorax Rep... 76 4e-13 UniRef50_B6JG92 H-NS histone family n=4 Tax=Bradyrhizobiaceae Re... 76 4e-13 UniRef50_A1B6U3 Histone family protein nucleoid-structuring prot... 75 5e-13 UniRef50_A3V571 DNA-binding protein, H-NS family n=4 Tax=Rhodoba... 75 5e-13 UniRef50_A2SFJ3 Nucleoid protein H-NS n=3 Tax=Burkholderiales Ge... 75 5e-13 UniRef50_Q8VTF2 LEE encoded regulator n=28 Tax=Enterobacteriacea... 75 5e-13 UniRef50_Q3JY88 H-NS histone family protein n=47 Tax=Betaproteob... 75 6e-13 UniRef50_B7I346 DNA-binding protein H-NS n=18 Tax=Acinetobacter ... 75 7e-13 UniRef50_Q2T3P5 H-NS histone family protein n=4 Tax=pseudomallei... 75 8e-13 UniRef50_Q5NWF8 Predicted histone-like nucleoid-structuring prot... 75 9e-13 UniRef50_B8KVY0 H-NS histone family protein n=1 Tax=gamma proteo... 75 1e-12 UniRef50_Q84IJ5 DNA-binding protein n=1 Tax=Janthinobacterium sp... 73 2e-12 UniRef50_A4X023 Putative uncharacterized protein n=1 Tax=Rhodoba... 73 2e-12 UniRef50_B3EGE6 Putative uncharacterized protein n=1 Tax=Chlorob... 73 2e-12 UniRef50_B5S5D9 Histone-like nucleoid-structuring protein h-ns; ... 73 3e-12 UniRef50_Q47D23 Histone-like nucleoid-structuring protein H-NS n... 73 3e-12 UniRef50_A3SJ27 DNA-binding protein, H-NS family protein n=1 Tax... 73 3e-12 UniRef50_Q606Z8 Putative regulator protein n=1 Tax=Methylococcus... 73 3e-12 UniRef50_A1WX44 Histone family protein nucleoid-structuring prot... 72 5e-12 UniRef50_A4JS72 Histone family protein nucleoid-structuring prot... 72 5e-12 UniRef50_Q136M2 Histone-like nucleoid-structuring protein H-NS n... 72 5e-12 UniRef50_C9Y8W0 Putative uncharacterized protein n=1 Tax=Curviba... 72 6e-12 UniRef50_Q3IVA4 DNA-binding protein, H-NS family n=10 Tax=Rhodob... 72 6e-12 UniRef50_D1UM70 Histone family protein nucleoid-structuring prot... 72 7e-12 UniRef50_A3NFL1 H-NS histone family protein n=28 Tax=pseudomalle... 72 7e-12 UniRef50_Q3IVA3 Histone-like nucleoid-structuring protein H-NS n... 71 9e-12 UniRef50_B5J712 H-NS histone family n=1 Tax=Octadecabacter antar... 71 9e-12 UniRef50_A1TLA4 Histone family protein nucleoid-structuring prot... 71 9e-12 UniRef50_UPI00016A8021 histone family protein nucleoid-structuri... 70 2e-11 UniRef50_B0RKN1 Histone-like nucleoid-structuring protein H-NS n... 70 2e-11 UniRef50_B0RVJ3 DNA-binding protein n=20 Tax=Xanthomonadaceae Re... 70 2e-11 UniRef50_A6D5D9 DNA-binding protein H-NS n=1 Tax=Vibrio shilonii... 70 2e-11 UniRef50_Q1GMN5 Histone-like nucleoid-structuring protein H-NS n... 70 2e-11 UniRef50_Q0A759 Histone family protein nucleoid-structuring prot... 70 2e-11 UniRef50_Q1Q9B9 Nucleoid protein H-NS n=2 Tax=Psychrobacter RepI... 70 2e-11 UniRef50_A3U3K4 HNS family histone-like protein n=2 Tax=Oceanico... 70 2e-11 UniRef50_P42505 Trans-acting regulatory protein hvrA n=4 Tax=Rho... 70 3e-11 UniRef50_Q472Y8 Putative DNA-binding protein H-NS n=1 Tax=Ralsto... 70 3e-11 UniRef50_Q13JE5 Histone-like nucleoid-structuring protein H-NS n... 69 4e-11 UniRef50_UPI00016A3729 H-NS histone family protein n=4 Tax=Burkh... 69 5e-11 UniRef50_Q5NZI5 HNS-like transcription regulator protein n=11 Ta... 69 5e-11 UniRef50_D0KXX3 Histone family protein nucleoid-structuring prot... 68 5e-11 UniRef50_A3VE67 Histone-like nucleoid-structuring protein H-NS n... 68 6e-11 UniRef50_C5SD38 Histone family protein nucleoid-structuring prot... 68 9e-11 UniRef50_Q21SM3 Histone-like nucleoid-structuring protein H-NS n... 68 9e-11 UniRef50_A9C2A8 Histone family protein nucleoid-structuring prot... 68 1e-10 UniRef50_A1VUA7 Histone-like nucleoid-structuring protein H-NS n... 68 1e-10 UniRef50_B2UAC6 Histone family protein nucleoid-structuring prot... 67 1e-10 UniRef50_C6QA05 Histone family protein nucleoid-structuring prot... 67 1e-10 UniRef50_A6GS13 Predicted histone-like nucleoid-structuring prot... 67 2e-10 UniRef50_A3X1Q3 Regulator protein, putative n=1 Tax=Nitrobacter ... 67 2e-10 UniRef50_A9IZ20 Trans-acting regulatory protein n=12 Tax=Proteob... 67 2e-10 UniRef50_A2SNQ2 Nucleoid protein H-NS n=1 Tax=Methylibium petrol... 67 2e-10 UniRef50_B3DCX2 DNA-binding protein H-NS n=24 Tax=Burkholderia R... 67 3e-10 UniRef50_A1VV25 Histone family protein nucleoid-structuring prot... 66 3e-10 UniRef50_B2JNN0 Histone family protein nucleoid-structuring prot... 66 3e-10 UniRef50_B2AJ99 Histone-like nucleoid-structuring protein H-NS n... 66 3e-10 UniRef50_A0B3N4 Histone family protein nucleoid-structuring prot... 66 3e-10 UniRef50_Q0AEM4 Histone family protein nucleoid-structuring prot... 65 5e-10 UniRef50_A8LSF2 Histone family protein nucleoid-structuring prot... 65 6e-10 UniRef50_B4SKF4 Histone family protein nucleoid-structuring prot... 65 7e-10 UniRef50_A5UCH6 Acetolactate synthase 3 catalytic subunit n=1 Ta... 65 1e-09 UniRef50_Q2CI47 DNA-binding protein, H-NS family protein n=1 Tax... 65 1e-09 UniRef50_B5J2H6 H-NS histone family n=2 Tax=Octadecabacter antar... 64 1e-09 UniRef50_C6BPP4 Histone family protein nucleoid-structuring prot... 64 2e-09 UniRef50_B1KCC1 Histone family protein nucleoid-structuring prot... 63 2e-09 UniRef50_A3NU43 H-NS histone family protein n=24 Tax=pseudomalle... 63 3e-09 UniRef50_Q46969 Microcin DNA binding protein n=8 Tax=Enterobacte... 63 3e-09 UniRef50_Q46693 KorB protein n=6 Tax=root RepID=Q46693_ECOLX 62 5e-09 UniRef50_B3EGH4 Histone family protein nucleoid-structuring prot... 62 6e-09 UniRef50_C4I5I2 H-NS histone family protein n=16 Tax=pseudomalle... 61 1e-08 UniRef50_C1D8I9 Putative DNA segregation ATPase FtsK/SpoIIIE-lik... 60 2e-08 UniRef50_C9NQ13 Putative uncharacterized protein n=1 Tax=Vibrio ... 58 6e-08 UniRef50_A0Y514 DNA-binding protein, H-NS family n=2 Tax=Alterom... 56 3e-07 UniRef50_B2JR07 Histone family protein nucleoid-structuring prot... 56 4e-07 Sequences not found previously or not previously below threshold: UniRef50_Q3JFR1 H-NS histone family protein n=33 Tax=Burkholderi... 68 7e-11 UniRef50_B1Z3P6 Histone family protein nucleoid-structuring prot... 68 1e-10 UniRef50_Q395B4 Histone-like nucleoid-structuring protein H-NS n... 67 1e-10 UniRef50_Q2KZ53 DNA-binding protein (Histone) n=5 Tax=Bordetella... 65 5e-10 UniRef50_B2AJM1 Putative uncharacterized protein n=3 Tax=Cupriav... 65 9e-10 UniRef50_A9C2K0 Histone family protein nucleoid-structuring prot... 64 1e-09 UniRef50_A4JUS0 Histone family protein nucleoid-structuring prot... 63 2e-09 UniRef50_Q3JS38 H-NS histone family protein n=7 Tax=pseudomallei... 62 6e-09 UniRef50_B1FTJ8 Histone family protein nucleoid-structuring prot... 61 9e-09 UniRef50_B2TGU8 Histone family protein nucleoid-structuring prot... 61 1e-08 UniRef50_A4JW45 Histone-like nucleoid-structuring protein H-NS n... 61 1e-08 UniRef50_D0KM80 Histone family protein nucleoid-structuring prot... 60 2e-08 UniRef50_Q82UX8 H-NS histone family n=1 Tax=Nitrosomonas europae... 60 3e-08 UniRef50_C4KW97 H-NS histone family protein n=28 Tax=pseudomalle... 60 3e-08 UniRef50_B2JM34 Histone family protein nucleoid-structuring prot... 60 3e-08 UniRef50_B2TE45 Histone family protein nucleoid-structuring prot... 59 4e-08 UniRef50_B1FNZ3 Histone family protein nucleoid-structuring prot... 59 5e-08 UniRef50_A9BLZ8 Histone family protein nucleoid-structuring prot... 58 6e-08 UniRef50_Q6Y661 BphA n=2 Tax=Burkholderia pseudomallei RepID=Q6Y... 58 7e-08 UniRef50_A0B4Y5 Histone family protein nucleoid-structuring prot... 58 8e-08 UniRef50_C8N836 Putative uncharacterized protein n=1 Tax=Cardiob... 58 9e-08 UniRef50_D0IZE2 Histone-like nucleoid-structuring protein H-NS n... 58 1e-07 UniRef50_Q5NX28 Histone-like nucleoid-structuring protein H-NS n... 58 1e-07 UniRef50_A4JVX9 Histone family protein nucleoid-structuring prot... 57 1e-07 UniRef50_A1KAI1 Putative trans-acting regulatory protein HvrA n=... 57 1e-07 UniRef50_Q3JS54 BphA n=11 Tax=Burkholderia pseudomallei RepID=Q3... 57 1e-07 UniRef50_C9Y6P0 Putative uncharacterized protein n=1 Tax=Curviba... 57 1e-07 UniRef50_A1K1V6 Putative trans-acting regulatory protein HvrA n=... 57 2e-07 UniRef50_Q46U69 Putative uncharacterized protein n=4 Tax=Cupriav... 57 2e-07 UniRef50_C5T058 Histone family protein nucleoid-structuring prot... 56 3e-07 UniRef50_C9CRV4 Histone family protein nucleoid-structuring prot... 56 4e-07 UniRef50_B1Z177 H-NS histone family protein n=4 Tax=Burkholderia... 56 4e-07 UniRef50_A0KCC6 Histone family protein nucleoid-structuring prot... 56 4e-07 UniRef50_B1XWK6 Histone family protein nucleoid-structuring prot... 56 4e-07 UniRef50_A9EH02 Histone-like protein of HNS family n=4 Tax=Rhodo... 55 5e-07 UniRef50_Q46MF0 Histone-like nucleoid-structuring protein H-NS n... 55 6e-07 UniRef50_B4SG34 Histone-like nucleoid-structuring protein H-NS n... 55 8e-07 UniRef50_Q397M1 Histone-like nucleoid-structuring protein H-NS n... 54 1e-06 UniRef50_Q3JFX1 H-NS histone family protein n=27 Tax=Burkholderi... 54 1e-06 UniRef50_B2T963 Histone family protein nucleoid-structuring prot... 54 1e-06 UniRef50_B1TFR0 Histone family protein nucleoid-structuring prot... 54 2e-06 UniRef50_C4KLJ2 Putative uncharacterized protein n=2 Tax=Burkhol... 53 2e-06 UniRef50_B1XXE8 Putative uncharacterized protein n=1 Tax=Leptoth... 53 2e-06 UniRef50_B1KCF0 Histone family protein nucleoid-structuring prot... 53 2e-06 UniRef50_B1Z6F8 Putative HNS-like protein n=1 Tax=Burkholderia a... 52 5e-06 UniRef50_C5S5I1 Putative uncharacterized protein n=1 Tax=Allochr... 52 5e-06 UniRef50_B0RRY7 Histone-like nucleoid-structuring protein n=13 T... 52 5e-06 UniRef50_A5EX59 Putative uncharacterized protein n=1 Tax=Dichelo... 52 6e-06 UniRef50_A1W6B6 Nucleoid protein H-NS n=1 Tax=Acidovorax sp. JS4... 52 8e-06 UniRef50_UPI00016A50FD H-NS histone family protein n=1 Tax=Burkh... 50 2e-05 UniRef50_C0DYC0 Putative uncharacterized protein n=1 Tax=Eikenel... 50 2e-05 UniRef50_B9B7B2 H-NS histone family protein n=1 Tax=Burkholderia... 49 5e-05 UniRef50_B2T9F5 Putative uncharacterized protein n=9 Tax=Burkhol... 48 6e-05 UniRef50_Q2P0K4 Virulence regulator n=8 Tax=Xanthomonas RepID=Q2... 48 1e-04 UniRef50_B2JWB5 Putative uncharacterized protein n=1 Tax=Burkhol... 44 0.002 UniRef50_B4EME8 Putative DNA-binding phage protein n=1 Tax=Burkh... 43 0.002 UniRef50_B5EWD6 Putative uncharacterized protein n=1 Tax=Vibrio ... 43 0.004 UniRef50_A3T2T5 Histone-like protein, HNS family protein n=1 Tax... 43 0.004 UniRef50_D1TJ24 Putative uncharacterized protein n=1 Tax=Burkhol... 42 0.005 UniRef50_B0RPM6 Putative uncharacterized protein n=1 Tax=Xanthom... 42 0.005 UniRef50_A4WW11 Putative uncharacterized protein n=3 Tax=Rhodoba... 42 0.005 UniRef50_B4S9M9 Putative uncharacterized protein n=1 Tax=Prosthe... 42 0.007 UniRef50_A4STY6 Histone-like nucleoid-structuring protein H-NS n... 41 0.015 UniRef50_UPI00006CAF87 hypothetical protein TTHERM_00467380 n=1 ... 40 0.017 UniRef50_A7SF45 Predicted protein n=1 Tax=Nematostella vectensis... 40 0.020 UniRef50_B1ZZR1 Glycosyl transferase family 2 n=1 Tax=Opitutus t... 40 0.021 UniRef50_A6GSS8 Putative uncharacterized protein n=1 Tax=Limnoba... 40 0.024 UniRef50_D1IIM0 Whole genome shotgun sequence of line PN40024, s... 40 0.026 UniRef50_B8KYY1 Virulence regulator n=1 Tax=Stenotrophomonas sp.... 39 0.037 UniRef50_B2IA25 Histone family protein nucleoid-structuring prot... 39 0.038 UniRef50_C6CWK0 MutS2 family protein n=5 Tax=cellular organisms ... 39 0.042 UniRef50_Q12840 Kinesin heavy chain isoform 5A n=81 Tax=Metazoa ... 38 0.095 >UniRef50_Q5E4C0 Global DNA-binding transcriptional dual regulator H-NS n=5 Tax=Gammaproteobacteria RepID=Q5E4C0_VIBF1 Length = 173 Score = 145 bits (367), Expect = 3e-34, Method: Composition-based stats. Identities = 70/135 (51%), Positives = 98/135 (72%), Gaps = 1/135 (0%) Query: 1 MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQ 60 MS+ +K L N+R+LRA +RE TLE LEE LEKL+ VV ER+E E+ A++ E+ KL++ Sbjct: 40 MSDTIKTLLNLRSLRALSREMTLEQLEEALEKLQSVVAERQESEAEERAQLAEKQAKLEE 99 Query: 61 YREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIK 120 +R+M+I GI P +LL++++A TK KRA RPAKY + D GE KTWTGQGRTP+ ++ Sbjct: 100 FRQMMIDSGIAPEDLLDTMSATTVKTKQKRAPRPAKYKFQDHAGEEKTWTGQGRTPSALQ 159 Query: 121 KAMDEQGKSLDDFLI 135 +D GK L++FLI Sbjct: 160 AQLD-AGKKLEEFLI 173 >UniRef50_P0ACG0 DNA-binding protein H-NS n=266 Tax=Gammaproteobacteria RepID=HNS_ECO57 Length = 137 Score = 141 bits (356), Expect = 6e-33, Method: Composition-based stats. Identities = 137/137 (100%), Positives = 137/137 (100%) Query: 1 MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQ 60 MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQ Sbjct: 1 MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQ 60 Query: 61 YREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIK 120 YREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIK Sbjct: 61 YREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIK 120 Query: 121 KAMDEQGKSLDDFLIKQ 137 KAMDEQGKSLDDFLIKQ Sbjct: 121 KAMDEQGKSLDDFLIKQ 137 >UniRef50_P43841 DNA-binding protein H-NS homolog n=25 Tax=Gammaproteobacteria RepID=HNS_HAEIN Length = 134 Score = 130 bits (326), Expect = 2e-29, Method: Composition-based stats. Identities = 64/135 (47%), Positives = 87/135 (64%), Gaps = 1/135 (0%) Query: 1 MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQ 60 M+E ++ L N+R+LRA RE TLE E LEKL+ + E+R E+ ER +L + Sbjct: 1 MNELVRGLTNLRSLRAAVRELTLEQAENALEKLQTAIEEKRANEAELIKAETERKERLAK 60 Query: 61 YREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIK 120 Y+E++ +GI P EL +AKRA RPAKY+++DENGE KTWTGQGRTP I+ Sbjct: 61 YKELMEKEGITPEELHEIFGTKTVSIRAKRAPRPAKYAFIDENGEHKTWTGQGRTPRPIQ 120 Query: 121 KAMDEQGKSLDDFLI 135 A++ +GKSL DF I Sbjct: 121 NALN-KGKSLSDFEI 134 >UniRef50_P0A1S5 DNA-binding protein stpA n=131 Tax=Gammaproteobacteria RepID=STPA_SALTI Length = 133 Score = 127 bits (318), Expect = 1e-28, Method: Composition-based stats. Identities = 73/135 (54%), Positives = 91/135 (67%), Gaps = 2/135 (1%) Query: 1 MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQ 60 M+ L+ LNNIRTLRA ARE +++ LEEMLEK VV ERREEE ++ E+ K+ Sbjct: 1 MNLMLQNLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEELQQRQLAEKQEKINA 60 Query: 61 YREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIK 120 + E++ ADGI+P EL +A+ K KR RPAKY + D NGE KTWTGQGRTP I Sbjct: 61 FLELMKADGINPEELFAMDSAMPRSAK-KRQPRPAKYRFTDFNGEEKTWTGQGRTPKPIA 119 Query: 121 KAMDEQGKSLDDFLI 135 +A+ GKSLDDFLI Sbjct: 120 QAL-AAGKSLDDFLI 133 >UniRef50_Q65SY1 Hns protein n=2 Tax=Pasteurellaceae RepID=Q65SY1_MANSM Length = 134 Score = 125 bits (313), Expect = 5e-28, Method: Composition-based stats. Identities = 65/135 (48%), Positives = 90/135 (66%), Gaps = 1/135 (0%) Query: 1 MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQ 60 M+E +K LNN+R LR+ A+E ++E LE ++EK ++V+ E++ EE EER +L++ Sbjct: 1 MNEVIKTLNNLRRLRSMAKELSIEQLENIIEKFQLVIEEKKAEELEIKRLEEERKNRLEK 60 Query: 61 YREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIK 120 YRE+L DGI +EL LA + KAKRA AKY Y++ENGE KTWTGQGR P I+ Sbjct: 61 YRELLKEDGITADELAQILAGKNNTAKAKRAPLSAKYKYINENGEQKTWTGQGRMPKAIQ 120 Query: 121 KAMDEQGKSLDDFLI 135 ++ GKSL DF I Sbjct: 121 LQLN-AGKSLSDFAI 134 >UniRef50_B0UTX9 Histone family protein nucleoid-structuring protein H-NS n=2 Tax=Histophilus somni RepID=B0UTX9_HAES2 Length = 134 Score = 123 bits (309), Expect = 2e-27, Method: Composition-based stats. Identities = 53/135 (39%), Positives = 81/135 (60%), Gaps = 1/135 (0%) Query: 1 MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQ 60 MS+ LK L +IR LR +E TL+ LE +LEK +++ NERR+ + +ER ++ + Sbjct: 1 MSDLLKTLTSIRALRVATKEFTLQELESILEKFQLITNERRQLIEENQRKEQERLERIAK 60 Query: 61 YREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIK 120 Y+ +L DG+ +L++ + K A R AKY Y D+NG+ KTWTGQGR P ++ Sbjct: 61 YKALLAQDGLTLTDLVDDPTFTTKRPRKKIAPRKAKYQYTDQNGKVKTWTGQGRMPLSLQ 120 Query: 121 KAMDEQGKSLDDFLI 135 ++ GK+L DF I Sbjct: 121 AELN-TGKTLADFEI 134 >UniRef50_Q07ZH5 Histone family protein nucleoid-structuring protein H-NS n=21 Tax=Shewanella RepID=Q07ZH5_SHEFN Length = 136 Score = 122 bits (307), Expect = 3e-27, Method: Composition-based stats. Identities = 48/135 (35%), Positives = 72/135 (53%), Gaps = 3/135 (2%) Query: 1 MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQ 60 MS+ L IL + R +A +E +L+ L E KLE ++ ER+EEE ER ++ + Sbjct: 1 MSDFLDILTHGRRFKAAVKELSLDDLRETAAKLEKIITERQEEEKLELEANAERNARIAE 60 Query: 61 YREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIK 120 + G+ +L + + K KRA RP KY + +GE WTGQGR P V K Sbjct: 61 ILAQIENSGLSIEDL-GDVTSSVKTAKTKRAPRPPKYQ-ITVDGELIQWTGQGRMPTVFK 118 Query: 121 KAMDEQGKSLDDFLI 135 + +D GK++ +FLI Sbjct: 119 QQVD-SGKNMSEFLI 132 >UniRef50_A6FD06 DNA-binding protein H-NS n=1 Tax=Moritella sp. PE36 RepID=A6FD06_9GAMM Length = 135 Score = 122 bits (307), Expect = 3e-27, Method: Composition-based stats. Identities = 57/137 (41%), Positives = 88/137 (64%), Gaps = 4/137 (2%) Query: 1 MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQ 60 M++ +KI N R+LRA +E ++E LEE+L K +V++R+E +A + + + K+ + Sbjct: 1 MNDFIKIFLNARSLRAATKELSVEQLEEVLIKFTTIVDDRKEANAAELEKQQAKQAKMNE 60 Query: 61 YREMLIADGIDPNELLN--SLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAV 118 L +GI P EL+ A K+ K KR RPAKY+Y D NGETKTWTGQGR P Sbjct: 61 ILLQLKENGISPEELMGLTDSTAEKTKNKTKRGPRPAKYAY-DFNGETKTWTGQGRMPLP 119 Query: 119 IKKAMDEQGKSLDDFLI 135 +++ M+E+G S++++LI Sbjct: 120 LQEVMNEKG-SIEEYLI 135 >UniRef50_A4SUA6 Histone-like nucleoid structuring protein n=3 Tax=Aeromonas salmonicida subsp. salmonicida RepID=A4SUA6_AERS4 Length = 136 Score = 122 bits (306), Expect = 3e-27, Method: Composition-based stats. Identities = 63/138 (45%), Positives = 85/138 (61%), Gaps = 5/138 (3%) Query: 1 MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQ 60 M++ LK+L NIR+LRA R+ E L+E+ EK + VV E+ + A E +KL + Sbjct: 1 MNDFLKVLLNIRSLRAAVRDLPFEQLQEIKEKFDTVVQEQLKAAETDQAAKLEHQKKLAE 60 Query: 61 YREMLIADGIDPNELL---NSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPA 117 +RE+L +G+ P +LL A +G KAKRA RPAKY Y+ GE +TWTGQGR PA Sbjct: 61 FRELLAIEGLSPEDLLSGRGLTAWADAGAKAKRAPRPAKYRYL-VEGEARTWTGQGRMPA 119 Query: 118 VIKKAMDEQGKSLDDFLI 135 I A+ G+SLD FLI Sbjct: 120 QIAAAI-ASGESLDAFLI 136 >UniRef50_Q6AQT8 Related to DNA-binding protein H-NS n=1 Tax=Desulfotalea psychrophila RepID=Q6AQT8_DESPS Length = 143 Score = 122 bits (306), Expect = 4e-27, Method: Composition-based stats. Identities = 53/137 (38%), Positives = 81/137 (59%), Gaps = 3/137 (2%) Query: 1 MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQ 60 MS LK N+R+L A R+ ++E LE L+KL +V +R+E A +E + K+++ Sbjct: 10 MSSFLKTFLNVRSLNAATRDLSIEQLESTLQKLGKIVEDRKEVVLAGEKLLEAKLAKMKE 69 Query: 61 YREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIK 120 +++++ DGIDP E + K K + P KY Y+D E KTW+G GRTP VIK Sbjct: 70 FKDLMEEDGIDPFEFAELCSTGN--VKQKNSPLPPKYEYMD-GAELKTWSGYGRTPEVIK 126 Query: 121 KAMDEQGKSLDDFLIKQ 137 A+ +GKS + FLI++ Sbjct: 127 NAIKNEGKSKESFLIER 143 >UniRef50_B2VAY7 Heat-stable nucleoid-structuring protein n=1 Tax=Erwinia tasmaniensis RepID=B2VAY7_ERWT9 Length = 145 Score = 122 bits (306), Expect = 4e-27, Method: Composition-based stats. Identities = 46/134 (34%), Positives = 72/134 (53%), Gaps = 1/134 (0%) Query: 4 ALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYRE 63 +L+NIR+LRA ARE E L + +EK+ V+ ER +E ++ L++ ++ Sbjct: 10 VTAVLSNIRSLRAYAREVDFEFLRDAVEKIHSVLAEREDEYKEEQRRKQDEVENLEKVKK 69 Query: 64 MLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAM 123 ++ G+DP L S + K K R P KY D +G T W+G+G+ PA K A+ Sbjct: 70 YMVELGLDPALLTPSSVSPKRSGKNYRPVVPPKYRIKDTDGNTHEWSGRGKPPAAFKAAL 129 Query: 124 DEQGKSLDDFLIKQ 137 D G++ DD LI + Sbjct: 130 D-AGRNKDDLLIDK 142 >UniRef50_Q5QW35 Histone-like protein n=2 Tax=Idiomarina RepID=Q5QW35_IDILO Length = 138 Score = 117 bits (294), Expect = 9e-26, Method: Composition-based stats. Identities = 56/139 (40%), Positives = 86/139 (61%), Gaps = 4/139 (2%) Query: 1 MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQ 60 MSE + IL + R L+A +E L LE + K + V+++RREEE+ + E + +K+++ Sbjct: 1 MSEFINILRHERRLKAALKELDLNELESVKSKFDSVISQRREEEAEKQRQNEAKQKKIEE 60 Query: 61 YREMLIADGIDPNELLNSLAAVK---SGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPA 117 ++ + GI+ +++L + T+ KRA +P KY Y DENGE +TWTGQGR P Sbjct: 61 FKSAMADAGIELSDILEQELGGEPIVKTTRKKRAPKPPKYEYTDENGEKQTWTGQGRMPK 120 Query: 118 VIKKAMDEQGKSLDDFLIK 136 +K A+D GKSL+ FLIK Sbjct: 121 AMKTAVD-NGKSLEAFLIK 138 >UniRef50_B2VB46 H-NS protein n=1 Tax=Erwinia tasmaniensis RepID=B2VB46_ERWT9 Length = 136 Score = 117 bits (293), Expect = 1e-25, Method: Composition-based stats. Identities = 66/130 (50%), Positives = 86/130 (66%), Gaps = 3/130 (2%) Query: 6 KILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREML 65 + LN IR +RA ARE E +EE+ EKL +V++ R+E A A++ ER KL++YREML Sbjct: 10 QGLNKIRVMRAAAREMPYEMMEEIREKLNAIVDDLRDEHQARASQESERLEKLEKYREML 69 Query: 66 IADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDE 125 + DGIDP +L +S K KA RA RPAKY Y D +G KTWTGQGRTP + A+ Sbjct: 70 LQDGIDPADLADSELPRKQ--KASRAPRPAKYRYTDTDGSEKTWTGQGRTPLAMANAL-A 126 Query: 126 QGKSLDDFLI 135 GK ++DFLI Sbjct: 127 AGKKIEDFLI 136 >UniRef50_B5EWF6 H-NS histone family n=2 Tax=Enterobacteriaceae RepID=B5EWF6_SALA4 Length = 141 Score = 115 bits (289), Expect = 3e-25, Method: Composition-based stats. Identities = 54/133 (40%), Positives = 77/133 (57%), Gaps = 2/133 (1%) Query: 3 EALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYR 62 K+L+NIR+LRA ARE E L++M +K VV E RE+ A E E+R + ++ Sbjct: 6 NVRKVLSNIRSLRAFAREVDFELLKDMAQKFNAVVEELREDAEREAKEREQRDARKRELL 65 Query: 63 EMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKA 122 EM+ ++G EL + + K Q PAKY + + NGE + WTG+GR P I++A Sbjct: 66 EMIASEGFSVEELTGASDTGSTRKKRVVQQVPAKYQF-EVNGEMQYWTGRGRKPKAIEEA 124 Query: 123 MDEQGKSLDDFLI 135 + GK LDDFLI Sbjct: 125 I-AAGKKLDDFLI 136 >UniRef50_A7FCL2 DNA-binding protein H-NS n=1 Tax=Yersinia pseudotuberculosis IP 31758 RepID=A7FCL2_YERP3 Length = 141 Score = 114 bits (285), Expect = 9e-25, Method: Composition-based stats. Identities = 59/137 (43%), Positives = 87/137 (63%), Gaps = 2/137 (1%) Query: 3 EALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYR 62 + LK++NN+R+LRA A+E +++L E EKL V+ ER +EE A E ++ L+++R Sbjct: 4 DTLKLINNLRSLRAFAKELDIDSLREFQEKLNTVIQEREKEEEEAKQEELKKRETLERFR 63 Query: 63 EMLIADGIDPNELLNSLAAVKSGTKAK--RAQRPAKYSYVDENGETKTWTGQGRTPAVIK 120 + GI+P E+ N L K+ K K R +R KY Y+D NGE + WTGQGR P I Sbjct: 64 NQITEAGINPEEVANFLTNTKTVNKVKSVRKKRTPKYEYLDSNGEVRQWTGQGRHPQPIS 123 Query: 121 KAMDEQGKSLDDFLIKQ 137 +A+ +GK L+DFLIK+ Sbjct: 124 EAIKNEGKKLEDFLIKK 140 >UniRef50_Q2BK75 DNA-binding protein Hns n=1 Tax=Neptuniibacter caesariensis RepID=Q2BK75_9GAMM Length = 130 Score = 112 bits (280), Expect = 4e-24, Method: Composition-based stats. Identities = 44/135 (32%), Positives = 74/135 (54%), Gaps = 5/135 (3%) Query: 1 MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQ 60 MS+ LKIL +LR Q + ++ LE+++ L V+ ++R EE A A +E+ K++ Sbjct: 1 MSDFLKILTRKNSLRKQCHDLSVAELEKVISDLTVITEDKRAEEEAVLAAEQEKAAKIES 60 Query: 61 YREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIK 120 R+ + G+D N+L++ + T A + + KY VD+ G W+G+GRTP + Sbjct: 61 IRQSMQDAGVDINDLMSLIGE----TAAPKKKVQPKYRIVDDEGNEHEWSGRGRTPLAFQ 116 Query: 121 KAMDEQGKSLDDFLI 135 D +G + DD LI Sbjct: 117 AYFD-KGFTKDDCLI 130 >UniRef50_A7JSK3 DNA-binding protein H-NS n=2 Tax=Mannheimia haemolytica RepID=A7JSK3_PASHA Length = 133 Score = 112 bits (280), Expect = 4e-24, Method: Composition-based stats. Identities = 60/131 (45%), Positives = 82/131 (62%), Gaps = 1/131 (0%) Query: 5 LKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREM 64 LK L NIR+LRA A++ LE L+ + EKL++++ E+ EE E ++ L +YREM Sbjct: 4 LKSLLNIRSLRALAKDLALEQLKSISEKLDIIIAEKEEEMKQEELEKLKQLESLNKYREM 63 Query: 65 LIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMD 124 L DG+ +EL LA T+ + RPAKY +VD NG KTWTGQGRTP ++ A+D Sbjct: 64 LKQDGLSIDELAELLADKVIKTRKALSPRPAKYKFVDANGNEKTWTGQGRTPKALQDALD 123 Query: 125 EQGKSLDDFLI 135 GK L+DF I Sbjct: 124 -SGKKLEDFAI 133 >UniRef50_Q15TX2 Histone-like nucleoid-structuring protein H-NS n=4 Tax=Alteromonadales RepID=Q15TX2_PSEA6 Length = 133 Score = 111 bits (277), Expect = 8e-24, Method: Composition-based stats. Identities = 48/136 (35%), Positives = 72/136 (52%), Gaps = 3/136 (2%) Query: 1 MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQ 60 MS+ + IL + R L+ +E ++E LE + +KL +++ R+ +E +E+ KL + Sbjct: 1 MSDFISILTHGRRLQGAVKELSVEELETVADKLNSIIDNRKAKELEQQEAAKEKNEKLNE 60 Query: 61 YREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIK 120 L A G+D N+L + A KS K +RP KY D G WTG GR P V K Sbjct: 61 ILAQLEAAGLDVNDLQKAEPAKKSTKVGK--KRPVKYILKDSAGNEHKWTGIGRMPKVFK 118 Query: 121 KAMDEQGKSLDDFLIK 136 +D GKSLD +L+ Sbjct: 119 AELD-NGKSLDSYLLD 133 >UniRef50_Q2NQ66 DNA-binding protein n=1 Tax=Sodalis glossinidius str. 'morsitans' RepID=Q2NQ66_SODGM Length = 144 Score = 108 bits (269), Expect = 6e-23, Method: Composition-based stats. Identities = 56/135 (41%), Positives = 84/135 (62%), Gaps = 3/135 (2%) Query: 3 EALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYR 62 E ++L+NIR+ RA ARE E L+EM EKL V+ ERR + AAE R K ++ Sbjct: 9 EIRRVLSNIRSTRAFARETNFELLKEMHEKLGAVIEERRTDAEKEAAERALREEKRKEIL 68 Query: 63 EMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKA 122 +++ +G ELL + S ++K+ + PAKY +V+ NGETKTWTG+GR P I +A Sbjct: 69 QLIEGEGFTAEELLGDDVNI-SKKRSKKPKAPAKYEFVE-NGETKTWTGKGRKPKPIAEA 126 Query: 123 MDEQGKSLDDFLIKQ 137 + G++L++FLI + Sbjct: 127 LS-AGRTLEEFLINK 140 >UniRef50_A2UW01 Histone-like nucleoid-structuring protein H-NS n=1 Tax=Shewanella putrefaciens 200 RepID=A2UW01_SHEPU Length = 133 Score = 106 bits (266), Expect = 2e-22, Method: Composition-based stats. Identities = 44/136 (32%), Positives = 76/136 (55%), Gaps = 8/136 (5%) Query: 1 MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQ 60 ++E IL + R +A +E T + L E+ EKL +V +R+ + A + + + +++Q Sbjct: 6 ITEFQSILLHARRFKASVKELTTQQLIEVQEKLNAIVEDRKAADEALKEQEQAKLAQIEQ 65 Query: 61 YREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIK 120 + ++ G+ ++L ++ K +R +P KY+ + +GE TWTGQGR P IK Sbjct: 66 LKSLIEEAGLSLDDLSST------PIKRERQPKPPKYA-ITVDGEQVTWTGQGRMPKPIK 118 Query: 121 KAMDEQGKSLDDFLIK 136 A+D G SL+ FLIK Sbjct: 119 AAID-NGASLESFLIK 133 >UniRef50_Q663D4 DNA-binding protein n=1 Tax=Yersinia pseudotuberculosis RepID=Q663D4_YERPS Length = 137 Score = 106 bits (264), Expect = 3e-22, Method: Composition-based stats. Identities = 48/134 (35%), Positives = 71/134 (52%), Gaps = 5/134 (3%) Query: 2 SEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQY 61 +E +IL NIRT+R RE L E EKL V + ER+ E E+ ++ K ++ Sbjct: 6 AEVKRILANIRTIRTFVREVDYLFLVEAHEKLGVALEERKAEFECEQEELNKKEAKKKEL 65 Query: 62 REMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKK 121 + ++G EL + + K R KY++ +ENGE K W+G GR P I+ Sbjct: 66 LAFIASEGFTLEELNGNGITKR---KKPPVHRKPKYTF-EENGEMKVWSGVGRKPKPIEV 121 Query: 122 AMDEQGKSLDDFLI 135 A++E GK+L DFLI Sbjct: 122 ALNE-GKTLSDFLI 134 >UniRef50_UPI0000E0F9F2 DNA-binding protein, H-NS family n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=UPI0000E0F9F2 Length = 134 Score = 105 bits (263), Expect = 4e-22, Method: Composition-based stats. Identities = 46/136 (33%), Positives = 76/136 (55%), Gaps = 3/136 (2%) Query: 1 MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQ 60 MS+ IL + R L+ +E +LE L++ EKL VV +R E ++A A E+ +++ Sbjct: 1 MSDFTAILLHTRRLQGATKELSLEELKDAQEKLASVVEKRVELQAAEEASKAEKAAQIEA 60 Query: 61 YREMLIADGIDPNELLNSLAAVKSGTKAKR-AQRPAKYSYVDENGETKTWTGQGRTPAVI 119 ++ ++A G+D ++ +L KS +R A+RP KY + +G WTG GR P V Sbjct: 61 IKQQMLAAGLDISDFAPNLETSKSTKSRRRGAKRPIKY-SISVDGVRTDWTGIGRMPVVF 119 Query: 120 KKAMDEQGKSLDDFLI 135 +A+ GK L+DF + Sbjct: 120 SEALS-SGKQLEDFSV 134 >UniRef50_B2TSE7 DNA-binding protein H-NS family n=5 Tax=Enterobacteriaceae RepID=B2TSE7_SHIB3 Length = 154 Score = 103 bits (256), Expect = 3e-21, Method: Composition-based stats. Identities = 61/136 (44%), Positives = 81/136 (59%), Gaps = 3/136 (2%) Query: 4 ALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYRE 63 + + NIR+LR ARE E L EM +KL VVV ERREE A E +E K QQ E Sbjct: 13 ISRTMMNIRSLRVFAREVDFEQLLEMQDKLNVVVEERREEAEREAVERQELEAKRQQAIE 72 Query: 64 MLIADGIDPNELLNSLAAV--KSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKK 121 +I+ G+DP LL + A K+ KAK R AKY + DENGE + W+G G+ P ++K Sbjct: 73 YIISLGLDPESLLAPVTADTVKTRRKAKGGVRKAKYRFKDENGEIREWSGNGKRPLALQK 132 Query: 122 AMDEQGKSLDDFLIKQ 137 +DE G ++DFLI + Sbjct: 133 LLDE-GHFMEDFLIDK 147 >UniRef50_C9Q4L7 Putative uncharacterized protein n=1 Tax=Vibrio sp. RC341 RepID=C9Q4L7_9VIBR Length = 283 Score = 102 bits (255), Expect = 3e-21, Method: Composition-based stats. Identities = 33/133 (24%), Positives = 62/133 (46%), Gaps = 1/133 (0%) Query: 1 MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQ 60 M++ LK L++ R + + +++ + ++ L+ + NE+ E AA E ++L+ Sbjct: 148 MTDILKSLSSPRRAKTMFKNASVDQVNLIINTLQNLRNEKELEAKMAAEIEERERQELEA 207 Query: 61 YREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIK 120 R ++ ID ++L + K K + K S G+ + W G G PA ++ Sbjct: 208 LRAQILEKNIDFSKLSALMGENKKPRKNSSKRTSPKPSATYAYGDNEVWDGVGEVPAALQ 267 Query: 121 KAMDEQGKSLDDF 133 +DE G L DF Sbjct: 268 SLLDE-GFELSDF 279 >UniRef50_Q70W58 DNA binding protein n=1 Tax=Yersinia enterocolitica RepID=Q70W58_YEREN Length = 147 Score = 97.4 bits (241), Expect = 1e-19, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 67/135 (49%), Gaps = 8/135 (5%) Query: 3 EALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYR 62 + L++ R ++ + C L ++ KL++ ++E ++ ++ R K + Sbjct: 8 DVYTYLSSGRNMKQFIKRCDYGLLIDLQNKLDIHISEWAAQQEKEQEAIQLRNEKRSELL 67 Query: 63 EMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKA 122 +++++G P EL+ A R++R KY Y D G K W+G GR P I++ Sbjct: 68 ALIVSEGFSPEELITVAAIKT------RSRRRMKYQYRD-GGAIKKWSGVGRVPRSIQER 120 Query: 123 MDEQGKSLDDFLIKQ 137 ++ G +LDDFLI + Sbjct: 121 LN-SGATLDDFLIAE 134 >UniRef50_C7BHB8 Dna-binding protein h-ns (Histone-like protein hlp-ii) (Protein h1 (Protein b1)) n=2 Tax=Photorhabdus RepID=C7BHB8_PHOAA Length = 148 Score = 97.4 bits (241), Expect = 1e-19, Method: Composition-based stats. Identities = 42/140 (30%), Positives = 74/140 (52%), Gaps = 6/140 (4%) Query: 2 SEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQY 61 + L+ I +LR A+ +E LE++ + LE+VV E +E + E E++ +K + Sbjct: 11 NIVSAHLSRITSLRKFAQTKDVEWLEDVYKTLEIVVQESKETFRLMSLEAEQKEQKRLEI 70 Query: 62 REMLIADGIDPNELLNSLA----AVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPA 117 +M+ G++ N + + K K R KY + +ENGE K W+G G+ P Sbjct: 71 LKMIEEIGLNINTINTPITLSDFKPKKSNARKGKTRKPKYQF-NENGEIKYWSGNGKKPL 129 Query: 118 VIKKAMDEQGKSLDDFLIKQ 137 ++K ++E G SL++FLI + Sbjct: 130 GLQKLLNE-GHSLNEFLITK 148 >UniRef50_B1VJ65 HN-S family DNA-binding protein n=3 Tax=Enterobacteriaceae RepID=B1VJ65_PROMH Length = 171 Score = 97.0 bits (240), Expect = 1e-19, Method: Composition-based stats. Identities = 45/135 (33%), Positives = 65/135 (48%), Gaps = 4/135 (2%) Query: 6 KILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREML 65 + L + LR A+ E LE + +L +V E+REE E+ E K + + L Sbjct: 15 ESLTGLTELRKFAKTKNFEWLENLANQLNGIVEEQREEFELRKLELAELEEKRLKAIKYL 74 Query: 66 IADGIDPNELLNSL--AAVKSGTKAKRAQRPAKYSYVDEN-GETKTWTGQGRTPAVIKKA 122 G+DP + S+ K G K K PAKY + G+T TWTG GR ++ Sbjct: 75 EELGLDPETIHISVFETTDKKGKKRKSKNTPAKYRFTHPETGKTDTWTGIGRMKKGLQLL 134 Query: 123 MDEQGKSLDDFLIKQ 137 +D G SLD+FLI + Sbjct: 135 ID-AGHSLDEFLIDK 148 >UniRef50_B1LDK0 H-NS histone family protein n=5 Tax=Enterobacteriaceae RepID=B1LDK0_ECOSM Length = 146 Score = 95.8 bits (237), Expect = 4e-19, Method: Composition-based stats. Identities = 35/137 (25%), Positives = 57/137 (41%), Gaps = 13/137 (9%) Query: 1 MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQ 60 +S L N +R E + E ++ + LE + +R E L Sbjct: 13 LSTVRTSLLNSNLVRKLIMEMSDEDFNQVKDNLEKAIEQR-----------NELKDSLAI 61 Query: 61 YREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIK 120 ++ + G+ ++ + + KY Y + NG+ W+GQGR P+VI Sbjct: 62 IKKYMDDAGVTAEDVYREFGKKLQTGRKNDSGESNKYRY-EYNGQIMYWSGQGRRPSVIA 120 Query: 121 KAMDEQGKSLDDFLIKQ 137 +A+ G SLDDFLI Q Sbjct: 121 EAIK-AGGSLDDFLISQ 136 >UniRef50_Q2C8B2 Putative DNA-binding protein H-NS n=2 Tax=Photobacterium RepID=Q2C8B2_9GAMM Length = 130 Score = 93.1 bits (230), Expect = 3e-18, Method: Composition-based stats. Identities = 63/132 (47%), Positives = 85/132 (64%), Gaps = 2/132 (1%) Query: 4 ALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYRE 63 + IL N+R+LRAQARE ++ L+E L+K VV ERREEE AA A +E+ KLQ+YR+ Sbjct: 1 MIDILLNLRSLRAQAREMSVVDLQEGLQKFTQVVEERREEEEAANAVNKEQEAKLQKYRD 60 Query: 64 MLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAM 123 ML A+GI EL+ L K + A+ Y++ DENGE KTWTGQGRTP +++ + Sbjct: 61 MLEAEGITAEELVALLGDAPKAKKKRAARPAK-YTFSDENGEEKTWTGQGRTPKALQQLL 119 Query: 124 DEQGKSLDDFLI 135 D G L +F I Sbjct: 120 D-NGAQLSEFEI 130 >UniRef50_B4TM78 DNA binding protein n=2 Tax=Salmonella enterica subsp. enterica serovar Schwarzengrund RepID=B4TM78_SALSV Length = 130 Score = 91.6 bits (226), Expect = 7e-18, Method: Composition-based stats. Identities = 39/135 (28%), Positives = 65/135 (48%), Gaps = 8/135 (5%) Query: 1 MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQ 60 M+ L + R L+ RE LE + ++ ++E+R E +R K + Sbjct: 1 MNRIQDELTSERALKKFLRESDFAFLEMLSARISAALDEKRAEHIEQEKLRRQREEKRNE 60 Query: 61 YREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIK 120 ++ ++G P EL+++ A KS + + Y Y + NG K W+G GR P VI+ Sbjct: 61 LLALIESEGFSPTELVSTTPAKKSAKRKAK------YQYFE-NGVHKKWSGVGRVPVVIQ 113 Query: 121 KAMDEQGKSLDDFLI 135 + +D GK L+ FLI Sbjct: 114 QELD-AGKPLESFLI 127 >UniRef50_Q28U97 Trans-acting regulatory protein hvrA n=2 Tax=Jannaschia sp. CCS1 RepID=Q28U97_JANSC Length = 119 Score = 89.7 bits (221), Expect = 2e-17, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 56/123 (45%), Gaps = 17/123 (13%) Query: 13 TLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDP 72 T+ + +LE L+ ++R E + E + R L + + + G Sbjct: 14 TMAKALEKMSLEELQ---------AHQRDVEATIKGYEKKRRADCLAELKAVAKKHGFSL 64 Query: 73 NELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDD 132 +E + KSG K AKY + +++TWTG+GR P +K+A+ GKSLD+ Sbjct: 65 DEFTGGKSGSKSGPKG-----VAKY--ANPADKSQTWTGRGRQPNWVKEALS-SGKSLDE 116 Query: 133 FLI 135 F I Sbjct: 117 FAI 119 >UniRef50_Q3J213 Histone-like nucleoid-structuring protein H-NS n=2 Tax=Rhodobacter sphaeroides RepID=Q3J213_RHOS4 Length = 131 Score = 87.7 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 59/133 (44%), Gaps = 15/133 (11%) Query: 17 QARECTLETLEEMLEKLEVVVNERRE--EESAAAAEVEERTRKLQQYREMLIADGIDPNE 74 A+ L TLE++++ + + R EE+ A E E+ + +E++ + G + + Sbjct: 1 MAKTTGLPTLEDLVDVPRGDLLKLRANVEEALRANEAREKQAAKDKIKELVESSGFNLVD 60 Query: 75 LLNSLAAVKSGTKAK----------RAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMD 124 L + GT + R KY ++TW+G+GR P ++ + Sbjct: 61 LFGDMLPKSEGTGKRSYNRKSKDGEREPVAPKYR--HPENPSETWSGRGRKPKWVEAHL- 117 Query: 125 EQGKSLDDFLIKQ 137 E G +++D LI + Sbjct: 118 EAGGNMEDLLINK 130 >UniRef50_A6VTC1 Histone family protein nucleoid-structuring protein H-NS n=2 Tax=Marinomonas RepID=A6VTC1_MARMS Length = 132 Score = 87.4 bits (215), Expect = 1e-16, Method: Composition-based stats. Identities = 39/136 (28%), Positives = 63/136 (46%), Gaps = 4/136 (2%) Query: 1 MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQ 60 MS L++ N RA A+E ++ LE ++ + + +EEE+A AE ++ + ++ Sbjct: 1 MSLLLELAGNKAKARAAAKELSVAQLENLIAGFNNALEKAKEEEAARDAEQALKSARAEE 60 Query: 61 YREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIK 120 ++ G+ E+ TK K KY GET WTG+GRTP V + Sbjct: 61 IANLIAKSGLTMEEVALLTTPKAGATKGKT--VEPKYRLT-VAGETHEWTGRGRTPKVFQ 117 Query: 121 KAMDEQGKSLDDFLIK 136 + D G S + IK Sbjct: 118 EYFD-AGNSRESVEIK 132 >UniRef50_A4NZJ0 Acetolactate synthase 3 catalytic subunit n=1 Tax=Haemophilus influenzae 22.4-21 RepID=A4NZJ0_HAEIN Length = 100 Score = 85.4 bits (210), Expect = 5e-16, Method: Composition-based stats. Identities = 34/96 (35%), Positives = 50/96 (52%) Query: 1 MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQ 60 M+E ++ L N+R+LRA RE TLE E LEKL+ + E+R E+ ER +L + Sbjct: 1 MNELVRGLTNLRSLRAAVRELTLEQAENALEKLQTAIEEKRANEAELIKAETERKERLAK 60 Query: 61 YREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAK 96 Y+E++ +GI P EL +K P K Sbjct: 61 YKELMEKEGITPEELHEIFGTKNCINSSKTCSTPCK 96 >UniRef50_C4AUA6 H-NS histone family protein n=4 Tax=pseudomallei group RepID=C4AUA6_BURMA Length = 271 Score = 85.4 bits (210), Expect = 5e-16, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 43/111 (38%), Gaps = 10/111 (9%) Query: 27 EEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGT 86 E M LE+ A A E L++ R + G+ P ++ + + G Sbjct: 171 ENMSTYLELKAKADEILRQAEEARRSELETVLKEVRTRVAEYGLTPEQVFGARRG-RRGQ 229 Query: 87 KAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIKQ 137 + + KY TW+G+GR P IK GK + FLI+Q Sbjct: 230 QVHASPTVPKYRDPKTGA---TWSGRGREPGWIK------GKKRERFLIQQ 271 >UniRef50_A1WU67 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Halorhodospira halophila SL1 RepID=A1WU67_HALHL Length = 124 Score = 82.7 bits (203), Expect = 3e-15, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 54/125 (43%), Gaps = 11/125 (8%) Query: 11 IRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGI 70 + T+R A E L++ R E+ E E R + Q+ +++ G+ Sbjct: 8 LETIRQAAEELDFVDLQK---------ASRMIEKEQKRREKEARKQAQQEMKQVAQKYGL 58 Query: 71 DPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSL 130 D +E+++ ++ K + P K+ +TWTG+GR P + +E G+ + Sbjct: 59 DLDEIVSGVSKGAGAKATKGNKVPPKFR--HPEDPDRTWTGRGRKPKWVVHWEEELGRDI 116 Query: 131 DDFLI 135 ++ I Sbjct: 117 EELRI 121 >UniRef50_Q1QIY6 Histone-like nucleoid-structuring protein H-NS n=1 Tax=Nitrobacter hamburgensis X14 RepID=Q1QIY6_NITHX Length = 130 Score = 82.7 bits (203), Expect = 3e-15, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 10/121 (8%) Query: 15 RAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNE 74 + L + EK+ V+ E+ AE E ++L Q +A +D +E Sbjct: 3 KKDLFSMQFNELWRLHEKITKVLAEKIV------AEKRELEKRLAQLNRSDVASKVDASE 56 Query: 75 LLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFL 134 L +L A S + K + KY + ++TW+G+G+TP A+ G+ +DDF Sbjct: 57 LSPALVAG-SPPRRKYPRVLPKYR--NPLSPSQTWSGRGKTPHWFANALKM-GRKIDDFR 112 Query: 135 I 135 I Sbjct: 113 I 113 >UniRef50_Q3JI76 H-NS histone family protein n=107 Tax=Burkholderiaceae RepID=Q3JI76_BURP1 Length = 173 Score = 81.2 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 43/111 (38%), Gaps = 10/111 (9%) Query: 27 EEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGT 86 E M LE+ A A E L++ R + G+ P ++ + + G Sbjct: 73 ENMSTYLELKAKADEILRQAEEARRSELETVLKEVRTRVAEYGLTPEQVFGARRG-RRGQ 131 Query: 87 KAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIKQ 137 + + KY TW+G+GR P IK GK + FLI+Q Sbjct: 132 QVHASPTVPKYRDPKTGA---TWSGRGREPGWIK------GKKRERFLIQQ 173 >UniRef50_B5IYF2 H-NS histone family n=1 Tax=Octadecabacter antarcticus 307 RepID=B5IYF2_9RHOB Length = 108 Score = 80.8 bits (198), Expect = 1e-14, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 50/118 (42%), Gaps = 16/118 (13%) Query: 18 ARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLN 77 RE +L L+++ ++ + V R E + R + + G+ +E++ Sbjct: 7 LRELSLSKLKQLQKEAALAVATR---------ETQLRQEARAKLESVAAEYGLGLDEIMG 57 Query: 78 SLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 + K G + P Y + +TW+G+GR P + K + E G L ++LI Sbjct: 58 APTLNKGGKMSY----PPLYR--NPGDPEQTWSGRGRRPLWLLKLL-ETGHDLSEYLI 108 >UniRef50_A9AS00 Histone family protein nucleoid-structuring protein H-NS n=6 Tax=Burkholderiaceae RepID=A9AS00_BURM1 Length = 128 Score = 80.4 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 49/131 (37%), Gaps = 13/131 (9%) Query: 9 NNIRT--LRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLI 66 ++R+ R A + M LE+ + A A + E + RE + Sbjct: 9 LHLRSKPSRPLANLLNRSSFTYMATYLELKAQAEALAQQAEEARIAELESIIATIREQIA 68 Query: 67 ADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQ 126 GI P +L ++ RA KY TW+G+G+ P I A Sbjct: 69 EYGITPEQLFG---RRRAPASGTRAPVAPKYRDPKTGA---TWSGRGKAPHWIANA---- 118 Query: 127 GKSLDDFLIKQ 137 K+ D FLI+Q Sbjct: 119 -KNRDRFLIEQ 128 >UniRef50_C7RP80 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RP80_9PROT Length = 106 Score = 79.6 bits (195), Expect = 3e-14, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 41/105 (39%), Gaps = 6/105 (5%) Query: 34 EVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNEL-LNSLAAVKSGTKAKRAQ 92 E++V E+ +E + Q ++++ G+ + + R Sbjct: 6 ELLVQRAELEKQIEETRSQEVAAAVVQAKQLIAEYGLTAADCGFKLTPSAAQMAGKTRTP 65 Query: 93 RPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIKQ 137 KY + +TW+G+G+ P + + G+ +DFL+ + Sbjct: 66 VAVKYRGPN----GETWSGRGKAPNWLTS-LVAHGRDKNDFLVHK 105 >UniRef50_A1VWC2 Nucleoid protein H-NS n=2 Tax=Polaromonas naphthalenivorans CJ2 RepID=A1VWC2_POLNA Length = 114 Score = 79.3 bits (194), Expect = 3e-14, Method: Composition-based stats. Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 8/114 (7%) Query: 25 TLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELL--NSLAAV 82 TL++ +++ E +V E R++ ER + + +E++ G+ +L ++ Sbjct: 6 TLQQQIQEAEAIVKELRKQLDEE--RKGERMQAVASAKELIKTHGLTAADLGFSGKGSSA 63 Query: 83 KSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIK 136 K KR AKY + KTWTG+G++PA + + G + DDFLIK Sbjct: 64 KRPAGDKRGVVAAKYQDHESG---KTWTGRGKSPAWLAAQL-AAGYTKDDFLIK 113 >UniRef50_D1UME5 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Burkholderia sp. CCGE1001 RepID=D1UME5_9BURK Length = 108 Score = 78.9 bits (193), Expect = 5e-14, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 42/103 (40%), Gaps = 5/103 (4%) Query: 22 TLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAA 81 LETL+ E L+ + + + + +V E+ + + R + A I +EL Sbjct: 3 DLETLKAQREILQAQLAD--IDNTIRVHQVAEKVQMIAAIRLKMAAYNITLDELRGEPTK 60 Query: 82 VKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMD 124 + + P +Y + TW+G+GR P I + D Sbjct: 61 PRHAAAKGKGTVPVRYRNPETGD---TWSGRGRRPKWITASAD 100 >UniRef50_A9M4Q2 DNA-binding protein n=1 Tax=Vibrio sp. 23023 RepID=A9M4Q2_9VIBR Length = 135 Score = 78.1 bits (191), Expect = 8e-14, Method: Composition-based stats. Identities = 36/137 (26%), Positives = 66/137 (48%), Gaps = 8/137 (5%) Query: 1 MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQ 60 M++ +K L R +A + +E L+ +L + + E+ E A ++ + L++ Sbjct: 1 MTDIIKQLTQPRRAKALFKHTNIEQLDRILNIITEIKIEKEHEAQKQAEHEQQERQALEE 60 Query: 61 YREMLIADGIDPNELLNSLAAVKSGTKAKRAQRP---AKYSYVDENGETKTWTGQGRTPA 117 RE ++ G+D ++L++ + + K K Y Y G+ KTW G+G P Sbjct: 61 MREEILNKGLDFDKLVSLMKPQRKAKKRKSTGTKDTQKTYRY----GDNKTWNGEGNVPE 116 Query: 118 VIKKAMDEQGKSLDDFL 134 ++K +DE G L DFL Sbjct: 117 EMQKMLDE-GLELADFL 132 >UniRef50_Q13SX0 HNS-like transcriptional regulator n=24 Tax=Burkholderiales RepID=Q13SX0_BURXL Length = 100 Score = 77.3 bits (189), Expect = 1e-13, Method: Composition-based stats. Identities = 26/107 (24%), Positives = 44/107 (41%), Gaps = 10/107 (9%) Query: 29 MLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKA 88 M + ++ + + A A E + R+ + G+ +L ++AA + Sbjct: 1 MSQYADLKAQIAKLQAQAEEARRTEIDNVIADIRQKIAEYGLTAQDLGFAVAAKRGRPPK 60 Query: 89 KRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 K A PAKY TW+G+G+ P I GK+ + FLI Sbjct: 61 K-APLPAKYQDPKSGN---TWSGRGKPPKWIV------GKNRERFLI 97 >UniRef50_B2SWM9 Histone family protein nucleoid-structuring protein H-NS n=7 Tax=Burkholderia RepID=B2SWM9_BURPP Length = 100 Score = 77.3 bits (189), Expect = 1e-13, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 9/104 (8%) Query: 34 EVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQR 93 E++ + E+ A+ E L + ++ + GI +EL AA + RA Sbjct: 6 ELLAQREKLEKQIEEAKSREYAEVLNEIKQKMTDYGISLSELGGGRAAKGAKAARPRAGV 65 Query: 94 PAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIKQ 137 KY D TW+G+G+ P I G + FLI++ Sbjct: 66 APKYRDPDSGS---TWSGRGKPPRWI------AGLDREKFLIEK 100 >UniRef50_B9Z6W8 Histone family protein nucleoid-structuring protein H-NS n=5 Tax=Neisseriaceae RepID=B9Z6W8_9NEIS Length = 101 Score = 77.3 bits (189), Expect = 1e-13, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 44/118 (37%), Gaps = 19/118 (16%) Query: 18 ARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLN 77 + L + L E E EE+ + +Q E+ A G+ E+L Sbjct: 3 LSNLSFADLLSLKSDL---------ENEIKRREHEEKAKAKKQIVELARAYGLSVEEVLG 53 Query: 78 SLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 + R AKY TWTG+GR P +++ + GK+L+D I Sbjct: 54 KVGP-------ARKPVEAKY--CHPQNPELTWTGRGRKPLWVQELL-AAGKNLEDLAI 101 >UniRef50_Q2SV21 DNA-binding protein BprA n=4 Tax=Burkholderia RepID=Q2SV21_BURTA Length = 111 Score = 76.6 bits (187), Expect = 2e-13, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 47/118 (39%), Gaps = 16/118 (13%) Query: 18 ARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLN 77 E ET +E+ +L+ V +A A E ++ R+ ++ GI ++ Sbjct: 1 MSELNPETFQELRARLKSVAE------AAEIARKREAADAIKVIRKTVLQYGISAEDIFG 54 Query: 78 SLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 A G +R KY + TW+G+GR P I G++ D FLI Sbjct: 55 R-ARPNGGRGKRRGPAAPKYCNPETGA---TWSGRGRPPQWI------AGRNRDRFLI 102 >UniRef50_C5CUL7 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Variovorax paradoxus S110 RepID=C5CUL7_VARPS Length = 114 Score = 76.6 bits (187), Expect = 3e-13, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 10/118 (8%) Query: 22 TLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNE--LLNSL 79 TL + ++K + + + R + A +ER ++ R + G+ ++ L Sbjct: 4 TLADINSQIKKYDEQIAQLR--KQAEDLRNQERAGVIEDVRRKIAEYGLTASDLKLSARG 61 Query: 80 AAVKSGTKAKRAQRPAKYSYVDENGETKTWT-GQGRTPAVIKKAMDEQGKSLDDFLIK 136 +VK + AKY +TW+ G+GR P + +A+ GKSL +F IK Sbjct: 62 GSVKRSAGVPAVKAAAKYRGP----TGETWSGGRGRKPRWVTEAL-AAGKSLSEFEIK 114 >UniRef50_B9NXM2 Trans-acting regulatory protein HvrA n=1 Tax=Rhodobacteraceae bacterium KLH11 RepID=B9NXM2_9RHOB Length = 107 Score = 76.2 bits (186), Expect = 3e-13, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 12/116 (10%) Query: 21 CTLETLEEM-LEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSL 79 +++L L+KL + +R E + + L++ R + G+ +++ Sbjct: 3 IDIDSLNAADLKKLASKIEKRIVEVEKESLHL-----ALKEMRAVADKLGVAFEDVIAL- 56 Query: 80 AAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 K + + AKY + + ++TWTG+GR PA + A+ E GKS+DD I Sbjct: 57 --HKGKGRKPSTKATAKY--ANPDDPSQTWTGRGRKPAWVNAAL-EAGKSIDDLAI 107 >UniRef50_Q47497 K12 plasmid DNA n=2 Tax=Enterobacteriaceae RepID=Q47497_ECOLX Length = 142 Score = 76.2 bits (186), Expect = 3e-13, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 54/126 (42%), Gaps = 5/126 (3%) Query: 7 ILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLI 66 I+ R A R+ E LE+++ + E+ EE+ +++ + Sbjct: 19 IMCERRKATAVLRKIPPENLEQLINMWSDIAQGMIEKFKEEQKATEEKAAATKRF---ME 75 Query: 67 ADGIDPNELLNSLAAV-KSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDE 125 I +E L + TK+K KY ++ +G++ TWTG+GR PA + D+ Sbjct: 76 EHNITADEALQIFENLFGPSTKSKSTFGKVKYR-IEVDGKSITWTGKGRRPAAFAEMSDD 134 Query: 126 QGKSLD 131 + K + Sbjct: 135 ELKKYE 140 >UniRef50_Q0VT26 DNA-binding protein H-NS n=2 Tax=Alcanivorax RepID=Q0VT26_ALCBS Length = 118 Score = 75.8 bits (185), Expect = 4e-13, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 16/122 (13%) Query: 20 ECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSL 79 + +++ LE+++++ E ++++R+ E A V E+ M G+ P +LL S Sbjct: 7 QLSVDELEKLIKQAESALDKKRKAELKNAQAVLEK---------MAKNLGVAPQDLLKSS 57 Query: 80 AAVKSGTKAKRAQ------RPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDF 133 K T+ A+ RPAK + D N TWTG+G+ P ++ A+ +G L+DF Sbjct: 58 TEKKKTTRKNAAKKKTGVRRPAKVKFRDPNNSGNTWTGRGKRPLWLQDALS-KGAKLEDF 116 Query: 134 LI 135 + Sbjct: 117 AV 118 >UniRef50_B6JG92 H-NS histone family n=4 Tax=Bradyrhizobiaceae RepID=B6JG92_OLICO Length = 125 Score = 75.8 bits (185), Expect = 4e-13, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 50/119 (42%), Gaps = 13/119 (10%) Query: 18 ARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLN 77 ++ L E++ ++ ER ++ E+EER L + R D L Sbjct: 8 LESMPIDDLWSFHERISKILAER---ITSEKQELEERLAVLNRGRNAFGGD-------LA 57 Query: 78 SLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIK 136 + + K + KY + ++TW+G+G+ P + A+ G+ +DDF I+ Sbjct: 58 HSLDSNNKVRRKYPRVFPKYR--NPAAPSETWSGRGKQPRWLVAAIK-SGRKIDDFRIR 113 >UniRef50_A1B6U3 Histone family protein nucleoid-structuring protein H-NS n=6 Tax=Rhodobacteraceae RepID=A1B6U3_PARDP Length = 105 Score = 75.4 bits (184), Expect = 5e-13, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 42/115 (36%), Gaps = 18/115 (15%) Query: 21 CTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLA 80 +L L+++ + L + + A A E G EL Sbjct: 9 LSLAELKQLEKNLTKAIASFEDRRKAEARAAAEAVA---------KEHGFSLGELAEM-- 57 Query: 81 AVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 KRA KY TW+G+GR PA I A+ E GKSL+DF I Sbjct: 58 ----TPAQKRAAVAPKYR--HPENPEITWSGRGRKPAWIAGAL-EAGKSLEDFAI 105 >UniRef50_A3V571 DNA-binding protein, H-NS family n=4 Tax=Rhodobacteraceae RepID=A3V571_9RHOB Length = 119 Score = 75.4 bits (184), Expect = 5e-13, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 48/123 (39%), Gaps = 14/123 (11%) Query: 13 TLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDP 72 ++ T LE + +R+ E++ ++R L + G Sbjct: 11 SMNKDLSSMTRSELETL---------KRQVEKAMVDVAEKDRKAALAAAEKAAADHGFSL 61 Query: 73 NELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDD 132 E+ A + G ++ PAKY + ++TWTG+GR PA K A+ G S + Sbjct: 62 AEITGM--APRKGKTGPKSSAPAKYR--NPTDISQTWTGKGRQPAWFKDALS-NGTSPEA 116 Query: 133 FLI 135 I Sbjct: 117 MEI 119 >UniRef50_A2SFJ3 Nucleoid protein H-NS n=3 Tax=Burkholderiales Genera incertae sedis RepID=A2SFJ3_METPP Length = 115 Score = 75.4 bits (184), Expect = 5e-13, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 45/119 (37%), Gaps = 11/119 (9%) Query: 22 TLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAA 81 T + L LE E A E + + + + ++ GI +L S + Sbjct: 3 TYQDLMSQKAALERQAA--ALTEQIETARRAEHSAVIARIKALMDEHGITLADLGRSKSP 60 Query: 82 VKSGTKAKRA-----QRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 VK AK + KY TW+G+G P +K A+ G+ +++F + Sbjct: 61 VKPAKAAKTGGTAGRKVAVKYRNTATGD---TWSGRGLQPNWLKAAL-ASGRKIEEFSV 115 >UniRef50_Q8VTF2 LEE encoded regulator n=28 Tax=Enterobacteriaceae RepID=Q8VTF2_ECOLX Length = 129 Score = 75.4 bits (184), Expect = 5e-13, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 44/104 (42%), Gaps = 6/104 (5%) Query: 33 LEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQ 92 ++++ ++ A +E ++ ++ I EL + + ++ Sbjct: 20 IQLIEQIEVLQQEAKRLPEQEIQSVIESIQKQTTYYNITLQELGYTNVPDDGLARRNSSK 79 Query: 93 RPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIK 136 R Y N E +TW+G GR P +K+A+ G +DFL+K Sbjct: 80 RVY-YR----NEEGQTWSGVGRQPRWLKEAL-LNGMKKEDFLVK 117 >UniRef50_Q3JY88 H-NS histone family protein n=47 Tax=Betaproteobacteria RepID=Q3JY88_BURP1 Length = 125 Score = 75.0 bits (183), Expect = 6e-13, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 37/102 (36%), Gaps = 10/102 (9%) Query: 34 EVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQR 93 +++ + E+ A+ E L ++ + G EL RA Sbjct: 34 DLLAQREKLEKQIEEAKSREYAEVLSDVKQKIADYGFTLAEL-GLGRGKAGKAGRPRAGV 92 Query: 94 PAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 AKY + TW+G+G+ P I GK+ + F I Sbjct: 93 AAKYRDPESGA---TWSGRGKPPRWI------AGKNREQFAI 125 >UniRef50_B7I346 DNA-binding protein H-NS n=18 Tax=Acinetobacter RepID=B7I346_ACIB5 Length = 108 Score = 75.0 bits (183), Expect = 7e-13, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 14/122 (11%) Query: 14 LRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPN 73 ++ E ++E L+ + E+ E ++ ++++ A Q E+ G Sbjct: 1 MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAY---------NQIIEIAENVGFSVE 51 Query: 74 ELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDF 133 +LL A + T K + Y ++N +TWTG+G+ P + + E+G L+DF Sbjct: 52 QLLEFGAQKRKKTTRKS----VEPRYRNKNNAEETWTGRGKQPRWLVAEI-EKGAKLEDF 106 Query: 134 LI 135 LI Sbjct: 107 LI 108 >UniRef50_Q2T3P5 H-NS histone family protein n=4 Tax=pseudomallei group RepID=Q2T3P5_BURTA Length = 99 Score = 74.6 bits (182), Expect = 8e-13, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 11/92 (11%) Query: 46 AAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGE 105 A A EE + + + R ++ GI P E+ A+ K ++ R+ KY Sbjct: 17 AEAMRREEASAVIAKLRAAILEFGITPAEVFG--ASAKQIRRSPRSPATQKYRDPLSGA- 73 Query: 106 TKTWTGQGRTPAVIKKAMDEQGKSLDDFLIKQ 137 TW+G+GR P I G++ DDFLI + Sbjct: 74 --TWSGRGRAPRWIV------GRNRDDFLIPR 97 >UniRef50_Q5NWF8 Predicted histone-like nucleoid-structuring protein n=2 Tax=Aromatoleum aromaticum EbN1 RepID=Q5NWF8_AZOSE Length = 127 Score = 74.6 bits (182), Expect = 9e-13, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 49/120 (40%), Gaps = 14/120 (11%) Query: 20 ECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSL 79 + TL L+++ +++ + +R+ + L++ +++ G+ +E++ S Sbjct: 5 QLTLPQLKQLSGRIDKEIGKRQ---------SASKAVVLRKLQKLAREHGLSLDEVMASP 55 Query: 80 AAVKSGTKAKRAQRPAK----YSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 + PAK + N W+G+GR P ++ + G SLD + Sbjct: 56 VFATPRKARSKTAAPAKAPLPVKFRHPNNRELAWSGRGRKPHWVEAWL-ANGGSLDALAV 114 >UniRef50_B8KVY0 H-NS histone family protein n=1 Tax=gamma proteobacterium NOR51-B RepID=B8KVY0_9GAMM Length = 137 Score = 74.6 bits (182), Expect = 1e-12, Method: Composition-based stats. Identities = 36/140 (25%), Positives = 56/140 (40%), Gaps = 12/140 (8%) Query: 4 ALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYRE 63 I + R A++ +L L+ + L ++ E E + R L++ + Sbjct: 2 LSAIAKSKTAARNAAKDLSLVELKSAIANLTAAA--KQIEVKEKTREDKRRAADLKKLQS 59 Query: 64 MLIADGIDPNELLNSLAAVKSGTKAK--------RAQRPAKYSYVDENGETKTWTGQGRT 115 M+ G+ +E + K R P KY + GET WTG+GRT Sbjct: 60 MMKKLGVTASEAAELAGKKRKVATRKKSGKRSGKRGPVPPKYE-ITVAGETHQWTGRGRT 118 Query: 116 PAVIKKAMDEQGKSLDDFLI 135 P V ++ M E G LD LI Sbjct: 119 PIVFREFM-ENGGDLDSCLI 137 >UniRef50_Q84IJ5 DNA-binding protein n=1 Tax=Janthinobacterium sp. J3 RepID=Q84IJ5_9BURK Length = 109 Score = 73.5 bits (179), Expect = 2e-12, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 5/97 (5%) Query: 39 ERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYS 98 + E + + ++ + +Q + G+ ELL + K ++ Q Sbjct: 18 QHDIEREIKSRQHQDLQKAREQILAIAQEAGVSVEELLAAGGKKSKTGKGQKVQA----R 73 Query: 99 YVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 Y + + ++TWTG+GR P I + + +GK+LDDF I Sbjct: 74 YQNPSDNSQTWTGRGRQPKWIAEGL-AKGKALDDFRI 109 >UniRef50_A4X023 Putative uncharacterized protein n=1 Tax=Rhodobacter sphaeroides ATCC 17025 RepID=A4X023_RHOS5 Length = 132 Score = 73.5 bits (179), Expect = 2e-12, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 40/118 (33%), Gaps = 21/118 (17%) Query: 18 ARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLN 77 + E LE + ++ + E + + + + G EL Sbjct: 36 LETLSREELEALQAEVAAAIATL---------ERQRKAQAQAELARRARELGFTLRELTG 86 Query: 78 SLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 + P + Y + +TW G+GR P +KAM G++ +D LI Sbjct: 87 TSEL-----------APWELRYANPANVNQTWCGRGRKPRWFEKAM-AAGRTPEDMLI 132 >UniRef50_B3EGE6 Putative uncharacterized protein n=1 Tax=Chlorobium limicola DSM 245 RepID=B3EGE6_CHLL2 Length = 125 Score = 73.1 bits (178), Expect = 2e-12, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 51/115 (44%), Gaps = 17/115 (14%) Query: 22 TLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAA 81 T+ L+E L ++ ++E+R + + + + + + I +EL Sbjct: 28 TITELQEQLVAIQRQIDEQRAL---------GKKQAIGEIKAKMAEFDITVDEL-----E 73 Query: 82 VKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIK 136 K ++ R ++P+ Y + E TW G+G P +K ++ G + D+L++ Sbjct: 74 SKGSSRGFREKKPSVIKYRKSDAE--TWVGRGPKPVWVKD-VEAAGGKISDYLVQ 125 >UniRef50_B5S5D9 Histone-like nucleoid-structuring protein h-ns; n=5 Tax=Ralstonia RepID=B5S5D9_RALSO Length = 83 Score = 73.1 bits (178), Expect = 3e-12, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 35/93 (37%), Gaps = 10/93 (10%) Query: 44 ESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDEN 103 +R + + + G+ +L +PA Y++ N Sbjct: 1 MKEGQQPDPDREAAIDWIHDQMETYGLTVEDLRALGCFDA-------PPKPAAPVYMNAN 53 Query: 104 GETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIK 136 G + W G G P +++A++ G+S++ F + Sbjct: 54 G--QVWDGTGPMPDWLQRAVN-AGQSIEHFRVN 83 >UniRef50_Q47D23 Histone-like nucleoid-structuring protein H-NS n=1 Tax=Dechloromonas aromatica RCB RepID=Q47D23_DECAR Length = 105 Score = 72.7 bits (177), Expect = 3e-12, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 43/118 (36%), Gaps = 15/118 (12%) Query: 18 ARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLN 77 T+ L ++ +++ E +E+ L + R G ELL Sbjct: 3 LSTLTVSQLRDLQQQIP---------AEIKRREAQEKVNVLNELRAFAKTRGYAIEELLG 53 Query: 78 SLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 A VK+ T K K Y WTG+GR P ++ + G +L+ L+ Sbjct: 54 KEAKVKAATGNK-----VKVKYRHPQNPELEWTGRGRKPKWVEAWV-ANGATLESLLV 105 >UniRef50_A3SJ27 DNA-binding protein, H-NS family protein n=1 Tax=Roseovarius nubinhibens ISM RepID=A3SJ27_9RHOB Length = 104 Score = 72.7 bits (177), Expect = 3e-12, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 54/115 (46%), Gaps = 17/115 (14%) Query: 21 CTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLA 80 ++ L+EM ++++ + ++ E ER L + + M G + +EL++ Sbjct: 7 MSVAELQEMRKEIDEQIARKKVE---------EREEVLAEMKAMAAKRGFEFSELVSG-- 55 Query: 81 AVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 + + P KY + ++TW+G+GR P I+ A+ +G ++DF I Sbjct: 56 ---KSKAKAKDKLPPKYR--NPKDASQTWSGRGRKPNWIQDAVK-KGAKIEDFAI 104 >UniRef50_Q606Z8 Putative regulator protein n=1 Tax=Methylococcus capsulatus RepID=Q606Z8_METCA Length = 112 Score = 72.7 bits (177), Expect = 3e-12, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 50/115 (43%), Gaps = 12/115 (10%) Query: 22 TLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAA 81 T + L+ +++ + E+ ER L+Q E+ G+ + + Sbjct: 9 TAQELQSLIDAATKALKEK---------LESERREYLRQMNELASKAGVRFQIIEDLSKG 59 Query: 82 VKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIK 136 + + + A+ PAKY + + + W+G+G P ++ + QG+ + +F IK Sbjct: 60 GGAPSTRRGAKVPAKYQ--NPHNPAEKWSGRGVKPRWLQAFL-AQGRDIKEFEIK 111 >UniRef50_A1WX44 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Halorhodospira halophila SL1 RepID=A1WX44_HALHL Length = 115 Score = 72.3 bits (176), Expect = 5e-12, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 6/97 (6%) Query: 39 ERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYS 98 E+R + + ++ R + GI E L+ L ++ + P KY Sbjct: 23 EKRVAKERKRRDRSRIEEAEREIRLVAAKYGIKLEEALSDLNGRTGPSRRR---VPPKYR 79 Query: 99 YVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 + TW+G+GRTP I++ ++QG S ++ I Sbjct: 80 --HPHDPDTTWSGRGRTPRWIQEW-EQQGGSREELRI 113 >UniRef50_A4JS72 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Burkholderia vietnamiensis G4 RepID=A4JS72_BURVG Length = 112 Score = 72.3 bits (176), Expect = 5e-12, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 38/104 (36%), Gaps = 14/104 (13%) Query: 33 LEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQ 92 L ++ + AA ER + Q + ++ + +L + S KR Sbjct: 17 LALIAQRESLDAQIIAARKAEREVAIGQIKALMKEFDLSVLDLQERVQKRNS----KRMS 72 Query: 93 RPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIK 136 KY KTW+G+GR PA + G FLI+ Sbjct: 73 TVPKYRDPATG---KTWSGRGRQPAWL-------GNDPAAFLIQ 106 >UniRef50_Q136M2 Histone-like nucleoid-structuring protein H-NS n=1 Tax=Rhodopseudomonas palustris BisB5 RepID=Q136M2_RHOPS Length = 139 Score = 72.3 bits (176), Expect = 5e-12, Method: Composition-based stats. Identities = 21/116 (18%), Positives = 45/116 (38%), Gaps = 13/116 (11%) Query: 21 CTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLA 80 T++ L E+ E++ V+ + + + + + G + + Sbjct: 26 MTVDELWEIHERISQVLCSK-------IQSEQRKLDGHLSRLRLGVTSGANQQ---SDDE 75 Query: 81 AVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIK 136 + + + KY + + TW G+G+ P + + GKS+DDFLI+ Sbjct: 76 SGPKPARRPYPKVYPKYRSLK--DPSLTWAGRGKQPLWLIDELK-SGKSIDDFLIR 128 >UniRef50_C9Y8W0 Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9Y8W0_9BURK Length = 100 Score = 71.9 bits (175), Expect = 6e-12, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 42/108 (38%), Gaps = 9/108 (8%) Query: 29 MLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKA 88 M + L+++ + E A +E + ++ + ++ + ++ S + + Sbjct: 1 MSKLLDLIAQKETLEAQIAEIREKEFAKAIEDVKALVSQYKLTAEDVFGSSSRGQKAVPK 60 Query: 89 KRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIK 136 + AKY +TW+G+G P + GK D+ IK Sbjct: 61 TSTKVAAKYRDPLTG---RTWSGRGLAPKWL------AGKDKADYAIK 99 >UniRef50_Q3IVA4 DNA-binding protein, H-NS family n=10 Tax=Rhodobacterales RepID=Q3IVA4_RHOS4 Length = 104 Score = 71.9 bits (175), Expect = 6e-12, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 47/118 (39%), Gaps = 19/118 (16%) Query: 18 ARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLN 77 ++ +LE L+E+ ++ + A E + L+Q + G + EL Sbjct: 6 LKDLSLEELKELRVEIAQAI---------TAQERHCKQEALEQLQAKARQLGFNLEELAP 56 Query: 78 SLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 ++ +R Q A Y + + W G+GR P +AM GKS ++ I Sbjct: 57 AM---------QRGQVGAMLRYANPANPGEVWRGRGRKPRWFTQAM-AAGKSPEELQI 104 >UniRef50_D1UM70 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Burkholderia sp. CCGE1001 RepID=D1UM70_9BURK Length = 283 Score = 71.6 bits (174), Expect = 7e-12, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 43/119 (36%), Gaps = 21/119 (17%) Query: 25 TLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKS 84 TLE + K+ + + A A ++ T + + R+++ G+ ++ + K Sbjct: 3 TLENLQAKIA------KLQAQAEAIVKKDSTAVIAKIRDIMDKHGLTVADIDAHIGGGKK 56 Query: 85 GTKAKRAQRPA-------KYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIK 136 + + A KY TWTG GR P I A K +L+ Sbjct: 57 RGRKPGVKTVAKSSASTVKYRDPKTGA---TWTGHGRAPVWIANA-----KDRTKYLVD 107 Score = 43.8 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 8/46 (17%) Query: 90 RAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 R +PA Y+ TW+G+GR PA I A K FLI Sbjct: 129 RGPQPALYADPKTGA---TWSGRGRAPAWIASA-----KDRTKFLI 166 >UniRef50_A3NFL1 H-NS histone family protein n=28 Tax=pseudomallei group RepID=A3NFL1_BURP6 Length = 101 Score = 71.6 bits (174), Expect = 7e-12, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 47/116 (40%), Gaps = 19/116 (16%) Query: 22 TLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAA 81 T E L+ L+ L A AA+ E + L Q RE ++ I P+++ Sbjct: 3 TYEELKAQLDALNK---------EAEAAKAREISTALSQIRETVLRYEIRPDQIFPQWTR 53 Query: 82 VKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIKQ 137 ++S K R P KY +TW G+GR P + G + FLI + Sbjct: 54 LRSPDKR-RGPLPPKYRNPMTG---ETWCGRGRAPKWM------SGSPREVFLIDR 99 >UniRef50_Q3IVA3 Histone-like nucleoid-structuring protein H-NS n=2 Tax=Rhodobacter sphaeroides RepID=Q3IVA3_RHOS4 Length = 105 Score = 71.2 bits (173), Expect = 9e-12, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 45/115 (39%), Gaps = 18/115 (15%) Query: 21 CTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLA 80 +++ L+ + ++ ++ E R L + E G +EL + Sbjct: 9 LSIKELKNLQTQVAKAIS---------TFEERRRKEALSELEEKARELGFSLSELTGTAL 59 Query: 81 AVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 +RA KY + + +TW+G+GR P +A+ GK+ +D I Sbjct: 60 T------RQRAGAAPKY--ANPDQPEQTWSGRGRKPHWFVEAL-AAGKTAEDLQI 105 >UniRef50_B5J712 H-NS histone family n=1 Tax=Octadecabacter antarcticus 307 RepID=B5J712_9RHOB Length = 113 Score = 71.2 bits (173), Expect = 9e-12, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 56/123 (45%), Gaps = 11/123 (8%) Query: 14 LRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPN 73 ++ + + + LE++ ++ + + E+ + ++ A G Sbjct: 1 MKTDLKYMSRKELEKLSADIDKAMAKL---------ANREKALAVVAVEKIAKAHGFTLA 51 Query: 74 ELLNSLAAVK-SGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDD 132 EL +S +VK + K+ ++ + +V+ + KTWTG+GR P K+A+ GK+ D+ Sbjct: 52 ELGDSKPSVKLASKPRKKQKQASAPKFVNLDDNAKTWTGKGRQPDWFKQAL-AAGKTPDE 110 Query: 133 FLI 135 I Sbjct: 111 MAI 113 >UniRef50_A1TLA4 Histone family protein nucleoid-structuring protein H-NS n=6 Tax=cellular organisms RepID=A1TLA4_ACIAC Length = 99 Score = 71.2 bits (173), Expect = 9e-12, Method: Composition-based stats. Identities = 23/116 (19%), Positives = 48/116 (41%), Gaps = 21/116 (18%) Query: 20 ECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSL 79 + + L + E+LE +NE R E + + Q R ++ G+ ++ Sbjct: 5 NTSYKELLKQREQLEQQINEAR---------RRELSDAIAQVRSLVSEYGLKAEDVF--- 52 Query: 80 AAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 + ++ + + + KY +TWTG+G+ P I+ G++ + F I Sbjct: 53 PSGRARSASAGTKVAPKYRNPATG---QTWTGRGKAPKWIQ------GENREQFAI 99 >UniRef50_UPI00016A8021 histone family protein nucleoid-structuring protein H-NS n=1 Tax=Burkholderia oklahomensis C6786 RepID=UPI00016A8021 Length = 112 Score = 70.4 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 50/120 (41%), Gaps = 14/120 (11%) Query: 21 CTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLA 80 T E + + +LE + E R+ +A E+ + Q E++ G+ P+EL Sbjct: 2 TTSENIAAEIAELEQKLKELRK--AADEQLAREKASIIGQINELIAKYGVSPHELAFPKT 59 Query: 81 AVKSGTKA----KRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIK 136 S + K KY TWTG+G+ PA I+ A + D+FLI+ Sbjct: 60 TKGSKASSSKFQKGTPGKPKYRDPKTGA---TWTGKGKPPAWIRDA-----ANRDEFLIQ 111 >UniRef50_B0RKN1 Histone-like nucleoid-structuring protein H-NS n=2 Tax=Yersinia RepID=B0RKN1_YEREN Length = 138 Score = 70.4 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 26/136 (19%), Positives = 61/136 (44%), Gaps = 9/136 (6%) Query: 3 EALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYR 62 + + LN + + R T + + ++ + V+ + +E + ER K+++ Sbjct: 11 DVSQFLNQLTRRKKVLRLMTADQINILISDAKAVLEDVIADEDIKKRQEAERQTKIREAA 70 Query: 63 EMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKA 122 +L +GI ++L + + +S T + NG+ + G GR V+K Sbjct: 71 ILLRNEGIGLDDLEKHMVSRRSPTVEPKTYL--------INGKKIIYKGSGRMNKVLKAI 122 Query: 123 MDEQGKS-LDDFLIKQ 137 +D++G L+ +L+++ Sbjct: 123 VDKEGHDALEKYLVRE 138 >UniRef50_B0RVJ3 DNA-binding protein n=20 Tax=Xanthomonadaceae RepID=B0RVJ3_XANCB Length = 155 Score = 70.4 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 46/124 (37%), Gaps = 14/124 (11%) Query: 25 TLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAA--- 81 L + K + + +++ A+ + Q A G EL + A+ Sbjct: 4 DLTGLSAKQLGALIKNAKKQQTVVAKRAPIAKVRTQLTRAAKAQGYSIEELFGAAASAGP 63 Query: 82 --------VKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDF 133 K + KY + +TWTG+G+ P + + + GK ++DF Sbjct: 64 GRPAAAGKPGPRAGRKLGKVAPKYR--NPANAQETWTGRGKQPRWLAE-LTAAGKKVEDF 120 Query: 134 LIKQ 137 LIK+ Sbjct: 121 LIKK 124 >UniRef50_A6D5D9 DNA-binding protein H-NS n=1 Tax=Vibrio shilonii AK1 RepID=A6D5D9_9VIBR Length = 151 Score = 70.4 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 54/139 (38%), Gaps = 7/139 (5%) Query: 3 EALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYR 62 E IL+N R + L +E ++ KL ER++EE A +E +++ Sbjct: 10 ELSSILSNKRKTASVLGRIELAKIETVIAKLSTYHQERKDEEKAQREALENTQSAIEEVL 69 Query: 63 EMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKT------WTGQGRTP 116 + ++L + + K K++ + D E + W G G P Sbjct: 70 SKTGLSWDEVSKLAETQVSKKPVRHKKKSSNAVNATSNDSQNEARYKDGECEWDGTGEQP 129 Query: 117 AVIKKAMDEQGKSLDDFLI 135 IK+ + E G L +F + Sbjct: 130 KWIKERL-EMGFELKEFEV 147 >UniRef50_Q1GMN5 Histone-like nucleoid-structuring protein H-NS n=11 Tax=Rhodobacterales RepID=Q1GMN5_SILST Length = 106 Score = 70.4 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 8/111 (7%) Query: 25 TLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKS 84 L +M K +++ + E++ AE+ ERT L+ + G +E+L+ A Sbjct: 4 DLNKMSRK-DLLQLRKDVEKALKDAELRERTEALKAAEQAAAEYGFSLDEVLSGPA---- 58 Query: 85 GTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 A++++ KY + +TWTG+GR P + A+ G + D I Sbjct: 59 KGAARKSKASPKYR--NPENPDETWTGRGRKPHWVHTALS-NGVDISDLEI 106 >UniRef50_Q0A759 Histone family protein nucleoid-structuring protein H-NS n=3 Tax=Ectothiorhodospiraceae RepID=Q0A759_ALHEH Length = 105 Score = 70.0 bits (170), Expect = 2e-11, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 50/114 (43%), Gaps = 16/114 (14%) Query: 22 TLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAA 81 ++ L ++ ++ + +RR++++ A + + + G NEL+ + Sbjct: 7 SVSELNKLKTDIDREIRQRRKQQAKEAQR---------ELKAVAEKYGFALNELVGNAQP 57 Query: 82 VKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 + AK Y +KTW+G+GR P I + +++G+ +D+ + Sbjct: 58 ASG------QKAKAKAIYRHPEDPSKTWSGRGRRPRWINEW-EQKGRDIDELRV 104 >UniRef50_Q1Q9B9 Nucleoid protein H-NS n=2 Tax=Psychrobacter RepID=Q1Q9B9_PSYCK Length = 121 Score = 70.0 bits (170), Expect = 2e-11, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 49/118 (41%), Gaps = 19/118 (16%) Query: 18 ARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLN 77 ++ L + E + ++ +++ + A E+ + E+L Sbjct: 23 LNSLNVDELRAITENAQQLIAQKQHQRLYDAYTQFEK---------IAEESNASIEEILQ 73 Query: 78 SLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 + ++ +R KY + + + +TWTG+GR P + +A+ G+ L+DF I Sbjct: 74 AGEKLEK-------KRSIKYR--NTDNDEETWTGRGRKPTWLVEAL-AAGRRLEDFAI 121 >UniRef50_A3U3K4 HNS family histone-like protein n=2 Tax=Oceanicola batsensis HTCC2597 RepID=A3U3K4_9RHOB Length = 109 Score = 70.0 bits (170), Expect = 2e-11, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 43/120 (35%), Gaps = 18/120 (15%) Query: 18 ARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLN 77 L L+ + + ++ + E ++ L + G N+L Sbjct: 6 LNSMDLSELKSLRKDVDAAI---------KTFEDRKKKAALAELEAKAAEMGFSLNDLTG 56 Query: 78 SLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIKQ 137 SG R P KY + TW+G+GR P K+ + +G + +D LI + Sbjct: 57 ------SGGGRGRKVNPPKYR--HPENDALTWSGRGRQPDWYKEQVS-KGTAPEDLLIVK 107 >UniRef50_P42505 Trans-acting regulatory protein hvrA n=4 Tax=Rhodobacteraceae RepID=HVRA_RHOCA Length = 102 Score = 69.6 bits (169), Expect = 3e-11, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 18/115 (15%) Query: 21 CTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLA 80 +L L+ + K++ + E ++ + E+ G E+L + Sbjct: 6 LSLNELKALRSKVDRAI---------VTYEERKKKEAFAELDEIARKMGYPLAEILTMVE 56 Query: 81 AVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 R AKY + ++TWTG+GR P ++ A+ GKSL+D I Sbjct: 57 TK------PRKTVAAKY--ANPANPSETWTGRGRKPKWVEAAL-ASGKSLEDLTI 102 >UniRef50_Q472Y8 Putative DNA-binding protein H-NS n=1 Tax=Ralstonia eutropha JMP134 RepID=Q472Y8_RALEJ Length = 122 Score = 69.6 bits (169), Expect = 3e-11, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 37/93 (39%), Gaps = 10/93 (10%) Query: 50 EVEERTRKLQQYREMLIADGIDPNEL-----LNSLAAVKSGTKAKRAQRPAKYSYVDENG 104 ER ++ + + G+ EL + + + Y N Sbjct: 3 AKTERADAIRWIQAQMDDYGLTLEELDAAGCFAPPPSPEPPPPSAPPAPVVCYR----NA 58 Query: 105 ETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIKQ 137 E TW GQG P+ +K+A++ G+SL+ + + + Sbjct: 59 EGLTWDGQGEMPSWLKRAVN-AGQSLEFYRVVK 90 >UniRef50_Q13JE5 Histone-like nucleoid-structuring protein H-NS n=10 Tax=cellular organisms RepID=Q13JE5_BURXL Length = 298 Score = 68.9 bits (167), Expect = 4e-11, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 45/119 (37%), Gaps = 20/119 (16%) Query: 23 LETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAV 82 + TLE++ +L ++ + A A ++ + L+ R ++ G+ ++ L + Sbjct: 55 VATLEQIQARL------KKLQAQAEAIVAKQSSAVLETIRGLMEKHGLTTKDIDAHLGSK 108 Query: 83 KSGTKAKRAQRPAK------YSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 K G KA Y TWTG GR PA I K FLI Sbjct: 109 KRGPKAGAKAAAKTAKSVAKYRDPKSGA---TWTGHGRAPAWIANV-----KDRAKFLI 159 Score = 48.4 bits (114), Expect = 7e-05, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 8/61 (13%) Query: 76 LNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 + GT ++ +PA Y TW+G+G PA + A K FLI Sbjct: 185 ASKSVGASGGTGQRKGPQPALYRDPKSGA---TWSGRGPAPAWLAGA-----KDRTKFLI 236 Query: 136 K 136 Sbjct: 237 D 237 >UniRef50_UPI00016A3729 H-NS histone family protein n=4 Tax=Burkholderia ubonensis Bu RepID=UPI00016A3729 Length = 101 Score = 68.9 bits (167), Expect = 5e-11, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 43/108 (39%), Gaps = 10/108 (9%) Query: 29 MLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKA 88 M L++ R + A A E R +++ +++++ + P +L + + Sbjct: 1 MSTYLDLKAKIRTLQVQAELARKNEVQRVIEEIQKVIVEFDLKPEDLFADIQRKSRRVRR 60 Query: 89 KRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIK 136 + A AKY W+G+GR P I G+ + FLI Sbjct: 61 R-APALAKYRDPASGA---VWSGRGRAPRWI------AGQDRESFLIH 98 >UniRef50_Q5NZI5 HNS-like transcription regulator protein n=11 Tax=Betaproteobacteria RepID=Q5NZI5_AZOSE Length = 112 Score = 68.9 bits (167), Expect = 5e-11, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 39/103 (37%), Gaps = 5/103 (4%) Query: 34 EVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNEL-LNSLAAVKSGTKAKRAQ 92 E++ ++ A E + R+ + + +L + A + KR Sbjct: 6 EILAQIEALKQQAEEMRQAEIAGVIADIRQKISDYNLSAADLGFGAPARGEKPAAGKRGT 65 Query: 93 RPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 AKY W+G+G P +K + E GK+ + FLI Sbjct: 66 VKAKYRNPAAGAS---WSGRGVMPKWLKAEL-EAGKAKEAFLI 104 >UniRef50_D0KXX3 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KXX3_HALNC Length = 107 Score = 68.5 bits (166), Expect = 5e-11, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 47/100 (47%), Gaps = 4/100 (4%) Query: 37 VNERREEESAAAAEVEER-TRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPA 95 + R+ + A + +R +++ R+ N + L ++ +K + PA Sbjct: 11 AEDLRQLMANAERTLRDRHQQRVHSLRKEAEELAASLNMSVAELFGLEKSSKLANKKLPA 70 Query: 96 KYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 KY ++ +TWTG+G+ P + A+ +G+SL+ F + Sbjct: 71 KY--INPANPAQTWTGRGKRPHWLADAL-ARGESLEKFAV 107 >UniRef50_A3VE67 Histone-like nucleoid-structuring protein H-NS n=4 Tax=Rhodobacterales RepID=A3VE67_9RHOB Length = 114 Score = 68.5 bits (166), Expect = 6e-11, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 57/126 (45%), Gaps = 16/126 (12%) Query: 14 LRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPN 73 ++ + + + LE++ +E + + +EE AA + E+ K + G + Sbjct: 1 MKFNLKGMSRKELEKLKADVEKALEKVGDEEKRAALQAAEKAAK---------SFGYSLD 51 Query: 74 ELLNSLAAVKSGTKAK----RAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKS 129 EL + ++ AK RA+ KY + + TWTG+GR P ++ + E+G + Sbjct: 52 ELSDVKPVKRAPKAAKSSDGRAKVAPKYR--NPDDANMTWTGRGRKPKWVEAHL-EKGGT 108 Query: 130 LDDFLI 135 L+ I Sbjct: 109 LEQIAI 114 >UniRef50_Q3JFR1 H-NS histone family protein n=33 Tax=Burkholderiales RepID=Q3JFR1_BURP1 Length = 131 Score = 68.5 bits (166), Expect = 7e-11, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 45/117 (38%), Gaps = 18/117 (15%) Query: 20 ECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSL 79 E + T +E+L +L+ + ++ A A E L R+ ++ G+ +L Sbjct: 33 EMVMATYKELLAQLDDL------KQQAKRARALELPDVLVGLRKKIVEYGLSQKDLF--- 83 Query: 80 AAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIK 136 K A +Y D TWTG+GR PA I G+ + F I Sbjct: 84 PPRLGRPKKADALPKPRYRDPDTGA---TWTGRGRAPAWI------AGQDRERFRID 131 >UniRef50_C5SD38 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5SD38_CHRVI Length = 98 Score = 68.1 bits (165), Expect = 9e-11, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 14/98 (14%) Query: 39 ERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYS 98 +R +E A R + ++Q ++ + P +L +S + +++ P KY Sbjct: 14 KRLLDEKIENARKAARGQAIEQALSLITTFQLTPEDLFSS-----TKKGKAKSKAPPKYR 68 Query: 99 YVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIK 136 + KTWTG+G P+ +K K+ DD+LI+ Sbjct: 69 DPETG---KTWTGRGPIPSWLKD------KNRDDYLIE 97 >UniRef50_Q21SM3 Histone-like nucleoid-structuring protein H-NS n=2 Tax=Comamonadaceae RepID=Q21SM3_RHOFD Length = 123 Score = 68.1 bits (165), Expect = 9e-11, Method: Composition-based stats. Identities = 25/136 (18%), Positives = 53/136 (38%), Gaps = 14/136 (10%) Query: 1 MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQ 60 MS+ ++I + I L+ QA + E + ++ ++ + + +++ + + Sbjct: 1 MSDLIEIQSQIEKLQKQASDI---KAREFGKTVQDILAKMQA-FGITLKDLQPGKARGAK 56 Query: 61 YREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIK 120 + G + K AKY + G W+G+G TP + Sbjct: 57 GKAKATKVGK-----AGAGVKPAGAPKKVALPVAAKYRGPNGEG----WSGRGLTPRWLT 107 Query: 121 KAMDEQGKSLDDFLIK 136 + + GK+ +DF IK Sbjct: 108 ALLVD-GKTKEDFAIK 122 >UniRef50_A9C2A8 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Delftia acidovorans SPH-1 RepID=A9C2A8_DELAS Length = 104 Score = 67.7 bits (164), Expect = 1e-10, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 39/108 (36%), Gaps = 9/108 (8%) Query: 21 CTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLA 80 E L ++ + E E + LQ ++ + A G+ E+ + Sbjct: 1 MDSEELAQLR------LQYHDLGERIKVGEAMAKKEALQNAKDSMTAAGLTDAEIAAHFS 54 Query: 81 AVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGK 128 V+ T + PAKY N TWTG+G+ P + + G Sbjct: 55 KVRKPTGVSGMKVPAKYRDRATNA---TWTGRGKAPTWFNQERVQGGH 99 >UniRef50_B1Z3P6 Histone family protein nucleoid-structuring protein H-NS n=13 Tax=Burkholderia cepacia complex RepID=B1Z3P6_BURA4 Length = 102 Score = 67.7 bits (164), Expect = 1e-10, Method: Composition-based stats. Identities = 20/104 (19%), Positives = 34/104 (32%), Gaps = 10/104 (9%) Query: 34 EVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQR 93 E+ A + E + + R + G+ ++ T Sbjct: 6 ELKAQADELMRRVEEARLAELDAVIDEIRSRVAEYGLTAGQIFGRHGGTAKATPRPSGSA 65 Query: 94 PAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIKQ 137 P +Y TW+G+GR P IK G + FLI++ Sbjct: 66 P-RYRDPKTGA---TWSGRGREPRWIK------GGRRERFLIER 99 >UniRef50_A1VUA7 Histone-like nucleoid-structuring protein H-NS n=1 Tax=Polaromonas naphthalenivorans CJ2 RepID=A1VUA7_POLNA Length = 99 Score = 67.7 bits (164), Expect = 1e-10, Method: Composition-based stats. Identities = 26/108 (24%), Positives = 46/108 (42%), Gaps = 11/108 (10%) Query: 29 MLEKLEVVVNERRE-EESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTK 87 M L+ ++ ER ++ + E R + ++ G+ N+L +S + K K Sbjct: 1 MSNTLQELLAERDALDQRIKELQAEARLEAISNVLSLIDRHGLKENDLFSSGTSTKK-NK 59 Query: 88 AKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 + PAKY + E W+G+G P ++ GK D+LI Sbjct: 60 YSATKVPAKYRDSETGSE---WSGRGIPPVWLR------GKDKKDYLI 98 >UniRef50_Q395B4 Histone-like nucleoid-structuring protein H-NS n=7 Tax=Burkholderiales RepID=Q395B4_BURS3 Length = 96 Score = 67.3 bits (163), Expect = 1e-10, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 43/109 (39%), Gaps = 15/109 (13%) Query: 29 MLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKA 88 ++ L+ + E + AA ER L Q RE++ + E+ + +A Sbjct: 3 QVQTLQAQLAEL--DRRIKAARSRERNAVLAQVRELVTGYALTAREIFGQGYSD----RA 56 Query: 89 KRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIKQ 137 K KY TW+G+GR PA I G+ FLI++ Sbjct: 57 KLFTVGVKYRDPATGA---TWSGRGRAPAWIV------GRDRTAFLIRE 96 >UniRef50_B2UAC6 Histone family protein nucleoid-structuring protein H-NS n=7 Tax=Burkholderiaceae RepID=B2UAC6_RALPJ Length = 95 Score = 67.3 bits (163), Expect = 1e-10, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 9/92 (9%) Query: 44 ESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDEN 103 ES+ AA + R + R + G+ +L + +RA A+Y Sbjct: 11 ESSPAAMLRRRAEAIAWVRMQIARYGLAYADLTAAGCF----PPLRRASSKARYRS---- 62 Query: 104 GETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 E +TW G+G P +++A++ G+S + F + Sbjct: 63 AEGQTWDGEGDMPDWLQRAVN-AGQSPEHFRV 93 >UniRef50_C6QA05 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QA05_9RHIZ Length = 115 Score = 67.3 bits (163), Expect = 1e-10, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 5/95 (5%) Query: 41 REEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYV 100 R +++ A A ER ++ ++ G EL A G ++ AKY Sbjct: 26 RVKKALAMARDRERMEIKKRVADLAETHGFSVAELFG--GARGRGPGKTKSVGVAKY--A 81 Query: 101 DENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 + + TWTG+GR P + + + +G L DF I Sbjct: 82 NPENKLDTWTGRGRKPNWVVERL-RKGAKLADFEI 115 >UniRef50_A6GS13 Predicted histone-like nucleoid-structuring protein n=1 Tax=Limnobacter sp. MED105 RepID=A6GS13_9BURK Length = 109 Score = 66.9 bits (162), Expect = 2e-10, Method: Composition-based stats. Identities = 17/108 (15%), Positives = 44/108 (40%), Gaps = 3/108 (2%) Query: 28 EMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTK 87 + + + + + + + + +++ +++ + G+ EL L K K Sbjct: 5 NLSALSASELQQLKSDIEKELNDRSSKLQAIEEVKKLAASKGLKLEELFAELGGSKPKGK 64 Query: 88 AKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 + P + + TW+G+G+ P +K+AM +G + D + Sbjct: 65 RELGPAPV--RFRHPQDASLTWSGRGKRPNWMKEAM-AKGMTEDQMRV 109 >UniRef50_A3X1Q3 Regulator protein, putative n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3X1Q3_9BRAD Length = 121 Score = 66.9 bits (162), Expect = 2e-10, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 52/115 (45%), Gaps = 16/115 (13%) Query: 21 CTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLA 80 T++ L ++ E++ V++ R +E E ++L Q R G + Sbjct: 19 MTVDELWQLHEEIGRVLSVR------LTSEKRELEKRLAQLR---GEKGAS----RSGAE 65 Query: 81 AVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 + + K + AKY + N +TW+G+G+ P + + G+S+D+F+I Sbjct: 66 TDAARERRKYPRVVAKYQ--NPNEPMETWSGRGKVPRWLAAELK-SGRSIDEFVI 117 >UniRef50_A9IZ20 Trans-acting regulatory protein n=12 Tax=Proteobacteria RepID=A9IZ20_BART1 Length = 95 Score = 66.6 bits (161), Expect = 2e-10, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 50/118 (42%), Gaps = 27/118 (22%) Query: 18 ARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLN 77 + + L+EM ++++ + +R+ +E+ ++ E+ GID +L++ Sbjct: 4 LKNMNFDELQEMRIQIDMELKKRQA---------KEKQNARRKILEIANTHGIDIADLVS 54 Query: 78 SLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 Y + N + + W G+GR P IK+ + E G +LD+ + Sbjct: 55 KER-----------------HYRNPNNQWELWNGRGRRPKWIKEWL-ENGYTLDELEV 94 >UniRef50_A2SNQ2 Nucleoid protein H-NS n=1 Tax=Methylibium petroleiphilum PM1 RepID=A2SNQ2_METPP Length = 114 Score = 66.6 bits (161), Expect = 2e-10, Method: Composition-based stats. Identities = 22/116 (18%), Positives = 40/116 (34%), Gaps = 12/116 (10%) Query: 28 EMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTK 87 + KL + + ++ A A E + + RE + + ++L G Sbjct: 4 KTYSKLMRQIAKL--QQEAEAIRQREIQGVVARIREAIEHYQLTASDLGFGGPKRGRGAA 61 Query: 88 AKRAQRPAK-------YSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIK 136 + K + D NG + WTG GR P A+ G + + +K Sbjct: 62 RSKVPVKGKAKPAVGRVRFRDANGNS--WTGHGRRPKWFVDAI-AAGATPESLSVK 114 >UniRef50_B3DCX2 DNA-binding protein H-NS n=24 Tax=Burkholderia RepID=B3DCX2_BURM1 Length = 110 Score = 66.6 bits (161), Expect = 3e-10, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 45/113 (39%), Gaps = 14/113 (12%) Query: 26 LEEMLEKLEVVVNERREEESAAAAEVE-ERTRKLQQYREMLIADGIDPNELLNSLAAVKS 84 + +ML +E + + RE + A E+ L RE + GI ELL + K Sbjct: 1 MNDMLTDIEALQAQLREVNARLAEVKRDEKRAALDAIREQVALYGISEEELLLAAGFRKP 60 Query: 85 GTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIKQ 137 + AKY K W+G G P + GK+LDD+ I + Sbjct: 61 RKRR----TSAKYYDPSTG---KEWSGFGPRPKWLV------GKNLDDYRIDR 100 >UniRef50_A1VV25 Histone family protein nucleoid-structuring protein H-NS n=3 Tax=Polaromonas naphthalenivorans CJ2 RepID=A1VV25_POLNA Length = 135 Score = 66.2 bits (160), Expect = 3e-10, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 48/118 (40%), Gaps = 18/118 (15%) Query: 32 KLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAA---------- 81 KL + E ++ + + + R + + RE + A GI EL + Sbjct: 10 KLNQQIAEL--QKKSEELKKKNRPVVVAELRERMAAYGITAQELTRPVPKARMLKEDFAT 67 Query: 82 --VKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIKQ 137 K K + PAK+ D E W+G+G P + + EQG S D+FLI + Sbjct: 68 PIKAVKGKIKSSPLPAKFRSPDGKNE---WSGRGMAPKWMNTLI-EQGHSRDEFLISK 121 >UniRef50_B2JNN0 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Burkholderia phymatum STM815 RepID=B2JNN0_BURP8 Length = 239 Score = 66.2 bits (160), Expect = 3e-10, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 47/122 (38%), Gaps = 23/122 (18%) Query: 30 LEKLEVVVNERREEESAAAAEVEERTR-KLQQYREMLIADGIDPNE-------------- 74 + LE++ ++ ++ A A + +R L Q RE++I G+ + Sbjct: 1 MATLEIIQARIKKLQTQAEALIAKRAHGALNQIRELMIKHGLTTEDIERRAKARRERSER 60 Query: 75 LLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFL 134 LL + A A + + P KY TW+G R PA IK K FL Sbjct: 61 LLGTKTARAKPATAAKGKLPPKYRDPKTGA---TWSGHARPPAWIKDV-----KDRSKFL 112 Query: 135 IK 136 I Sbjct: 113 ID 114 >UniRef50_B2AJ99 Histone-like nucleoid-structuring protein H-NS n=17 Tax=Burkholderiaceae RepID=B2AJ99_CUPTR Length = 104 Score = 66.2 bits (160), Expect = 3e-10, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 14/108 (12%) Query: 34 EVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNE----LLNSLAAVKSGTKAK 89 E++ ++ E A E ++Q R+++ + P + + + + Sbjct: 6 ELIAQKQAIEAQLEEARASEVASVIEQIRDLMAQYDLLPEDVAPRRRRGRPVGAASAQRE 65 Query: 90 RAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIKQ 137 +A P KY KTW+G+GR PA + GK + FLI Q Sbjct: 66 KAPLPPKYMDPKTA---KTWSGRGRAPAWL-------GKRPERFLIPQ 103 >UniRef50_A0B3N4 Histone family protein nucleoid-structuring protein H-NS n=38 Tax=Burkholderia RepID=A0B3N4_BURCH Length = 101 Score = 66.2 bits (160), Expect = 3e-10, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 47/117 (40%), Gaps = 21/117 (17%) Query: 22 TLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAA 81 T L LE+L+ +++ RE+ A + R + I P EL A Sbjct: 3 TYRQLSAQLERLQQKIDKEREKAIA---------DAIAHIRAKIDEYDITPEELGFRPAG 53 Query: 82 VKSGTKAKRAQR--PAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIK 136 + + +R P KY +TW+G+GR PA + GK+ FLIK Sbjct: 54 SSTAAATAKPKRTLPPKYLNPKTG---ETWSGRGRAPAWL-------GKNRGRFLIK 100 >UniRef50_Q2KZ53 DNA-binding protein (Histone) n=5 Tax=Bordetella RepID=Q2KZ53_BORA1 Length = 120 Score = 65.4 bits (158), Expect = 5e-10, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 51/124 (41%), Gaps = 12/124 (9%) Query: 21 CTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLA 80 ET K+E ++ R ++ A A + R + + + I P E++ +L Sbjct: 1 MPRETYAAQQAKIEKEIS--RLQKRAEALQTRRRKPVIASIVKSMREYNITPEEIIAALG 58 Query: 81 AVKSGTKAK--------RAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDD 132 + KS A ++R Y+ +TW+G+G+ P + + G S D Sbjct: 59 SAKSTRAAAPRRKATSDGSKRAVAPKYLHPQ-TGETWSGRGKAPRWLVAE-EGNGASRDS 116 Query: 133 FLIK 136 FLIK Sbjct: 117 FLIK 120 >UniRef50_Q0AEM4 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Nitrosomonas eutropha C91 RepID=Q0AEM4_NITEC Length = 100 Score = 65.4 bits (158), Expect = 5e-10, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 48/116 (41%), Gaps = 19/116 (16%) Query: 22 TLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAA 81 LE ++ + E++ + ++E R L++ + + G NEL S ++ Sbjct: 3 NLEEVQGIDEQIAALQARKKELLENK------RKEVLKEIKRAIQIYGFTVNELGLSGSS 56 Query: 82 VKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIKQ 137 K Y + N +TW G G P +K+ M +G L+D LIK+ Sbjct: 57 KKRQP-----------RYANPNDPDQTWGG-GARPKWLKEYM-ARGGKLEDCLIKK 99 >UniRef50_A8LSF2 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Dinoroseobacter shibae DFL 12 RepID=A8LSF2_DINSH Length = 105 Score = 65.4 bits (158), Expect = 6e-10, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 43/118 (36%), Gaps = 17/118 (14%) Query: 18 ARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLN 77 ++E L + E+ ++ A E + + G+ ++L+ Sbjct: 5 LSNMSMEDLTAL---------EKDIAKAKATLEKKRIAEARKAMEMAAKEYGMTVEDVLS 55 Query: 78 SLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 S KSG K AKY + +TWTG+GR P ++A+ G I Sbjct: 56 SGPDRKSGQKG-----VAKY--ANPANPDQTWTGRGRQPTWYREAI-AAGTDPASMEI 105 >UniRef50_B4SKF4 Histone family protein nucleoid-structuring protein H-NS n=3 Tax=Stenotrophomonas RepID=B4SKF4_STRM5 Length = 139 Score = 65.0 bits (157), Expect = 7e-10, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 37/99 (37%), Gaps = 8/99 (8%) Query: 42 EEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAA-----VKSGTKAKRAQRPAK 96 E+ + + + + G EL A + + + + AK Sbjct: 21 EQRKQLISSRRPASAVRRMLKAAAAEAGYTLEELFGGEANEEAAPRRKPARRRTGKVAAK 80 Query: 97 YSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 Y D + TW+G+GR P + + ++G + DFLI Sbjct: 81 YR--DPEYKRLTWSGRGRMPRWLASKV-QKGHKVTDFLI 116 >UniRef50_B2AJM1 Putative uncharacterized protein n=3 Tax=Cupriavidus RepID=B2AJM1_CUPTR Length = 96 Score = 64.6 bits (156), Expect = 9e-10, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 6/84 (7%) Query: 53 ERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQR-PAKYSYVDENGETKTWTG 111 ER ++ + + G+ EL + Y N E TW G Sbjct: 15 ERADAIRWIQAQMDDYGLTLEELDAAGCFAPPPPPPAAPPPPVVCYR----NAEGLTWDG 70 Query: 112 QGRTPAVIKKAMDEQGKSLDDFLI 135 QG P+ +K+A++ G+S++ + + Sbjct: 71 QGEMPSWLKRAVN-AGQSVEFYRV 93 >UniRef50_A5UCH6 Acetolactate synthase 3 catalytic subunit n=1 Tax=Haemophilus influenzae PittEE RepID=A5UCH6_HAEIE Length = 122 Score = 64.6 bits (156), Expect = 1e-09, Method: Composition-based stats. Identities = 28/82 (34%), Positives = 43/82 (52%) Query: 1 MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQ 60 M+E ++ L N+R+LRA RE TLE E LEKL+ + E+R E+ ER +L + Sbjct: 1 MNELVRGLTNLRSLRAAVRELTLEQAENALEKLQTAIEEKRANEAELIKAETERKERLAK 60 Query: 61 YREMLIADGIDPNELLNSLAAV 82 Y+E++ + LA Sbjct: 61 YKELMEKKVLHLKNYTKFLAQK 82 >UniRef50_Q2CI47 DNA-binding protein, H-NS family protein n=1 Tax=Oceanicola granulosus HTCC2516 RepID=Q2CI47_9RHOB Length = 100 Score = 64.6 bits (156), Expect = 1e-09, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 6/102 (5%) Query: 34 EVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQR 93 ++ +R + +ER L+ + G +EL + A K + + Sbjct: 5 DLEALKRDIDRQLEKLAKDERKLALEAAEKAAREHGYSLSELTAAGGAKKGKSG---SVN 61 Query: 94 PAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 P KY + + +TWTG+GR P IK A + +G + I Sbjct: 62 PPKYR--NPDNPDQTWTGKGRRPDWIKAA-EAKGVDISTMQI 100 >UniRef50_A9C2K0 Histone family protein nucleoid-structuring protein H-NS n=4 Tax=Comamonadaceae RepID=A9C2K0_DELAS Length = 136 Score = 64.2 bits (155), Expect = 1e-09, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 39/103 (37%), Gaps = 17/103 (16%) Query: 34 EVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQR 93 E++ + + A A L + ++++ G ++ + S Sbjct: 30 ELLAAKAALDMEIAKARTSAADAALSKVQKLVTDFGFTQQQVFPYIPEKTSA-------- 81 Query: 94 PAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIK 136 PAKY TWTG+G+ P IK + DDFLI+ Sbjct: 82 PAKYRDPATGA---TWTGRGKPPNWIKD------QDRDDFLIE 115 >UniRef50_B5J2H6 H-NS histone family n=2 Tax=Octadecabacter antarcticus RepID=B5J2H6_9RHOB Length = 113 Score = 63.9 bits (154), Expect = 1e-09, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 51/119 (42%), Gaps = 11/119 (9%) Query: 18 ARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLN 77 + + + LE++ + + + R+++ E+ + A G+ +++ Sbjct: 5 LKNMSRKELEKLASDVGKSLEKHRKKDLKKVRLEMEK---------LAAAHGVTVEDIMG 55 Query: 78 SLAAV-KSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 + A + KA + + Y D ++KTWTG+GR P K A+ G++ + I Sbjct: 56 NKATTEATPKKAAAVKAKSAPKYADSADKSKTWTGKGRQPEWFKSAI-AAGQTPESMAI 113 >UniRef50_C6BPP4 Histone family protein nucleoid-structuring protein H-NS n=6 Tax=Ralstonia RepID=C6BPP4_RALP1 Length = 103 Score = 63.9 bits (154), Expect = 2e-09, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 19/114 (16%) Query: 22 TLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAA 81 + + + + +++L+ ++ + ER+ LQ+ RE + EL Sbjct: 7 SYKDIVKQIQELQKQADKLKA---------AERSTALQEVREQISVFEFTAAEL-----G 52 Query: 82 VKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 K + P +Y + + TWTG+G P +K A+ E G L+DFL+ Sbjct: 53 FKGKASLAGKKVPTRYK----DDKGNTWTGRGHRPGWLKAAI-ESGAKLEDFLV 101 >UniRef50_A4JUS0 Histone family protein nucleoid-structuring protein H-NS n=2 Tax=Burkholderia cepacia complex RepID=A4JUS0_BURVG Length = 113 Score = 63.5 bits (153), Expect = 2e-09, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 41/109 (37%), Gaps = 15/109 (13%) Query: 27 EEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGT 86 E+M E++ E AA+ EER L++ + ++ E+ + Sbjct: 13 EKMSTFHELLAQRAALEAEIEAAKAEERLIALEEVKRLVDEFAFSTREVFGT------SA 66 Query: 87 KAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 KR +Y TW+G+GR+PA I GK F I Sbjct: 67 VRKRQPVQPRYRDPATGA---TWSGRGRSPAWI------DGKDRSQFQI 106 >UniRef50_B1KCC1 Histone family protein nucleoid-structuring protein H-NS n=4 Tax=Burkholderia RepID=B1KCC1_BURCC Length = 113 Score = 63.1 bits (152), Expect = 2e-09, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 57/121 (47%), Gaps = 22/121 (18%) Query: 17 QARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELL 76 Q + T+ L++ L L ++V E R +E+ KL++ E + I ELL Sbjct: 3 QMKSPTIRELQKQLGHLNLIVEEAR---------QKEKKIKLEEIAEQVKLFDITEIELL 53 Query: 77 NSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIK 136 + V KA R + AKY D ++W+G+G P + GK+LDD+LI+ Sbjct: 54 RAAGFV----KANRQKASAKYYDPDTG---RSWSGKGARPKWLT------GKNLDDYLIR 100 Query: 137 Q 137 + Sbjct: 101 E 101 >UniRef50_A3NU43 H-NS histone family protein n=24 Tax=pseudomallei group RepID=A3NU43_BURP0 Length = 114 Score = 62.7 bits (151), Expect = 3e-09, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 33/97 (34%), Gaps = 15/97 (15%) Query: 40 RREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSY 99 A + + + Q ++ GI P EL A A R K Y Sbjct: 12 LEIHAEIEALRRKAKAAAIMQIELLMTQYGISPGELKGVDGAP--------AHRKPKARY 63 Query: 100 VDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIK 136 + +TW+G+GR P + G+ L LI Sbjct: 64 WNPE-TGQTWSGRGRMPKWLV------GRELASHLID 93 >UniRef50_Q46969 Microcin DNA binding protein n=8 Tax=Enterobacteriaceae RepID=Q46969_ECOLX Length = 171 Score = 62.7 bits (151), Expect = 3e-09, Method: Composition-based stats. Identities = 36/95 (37%), Positives = 47/95 (49%), Gaps = 4/95 (4%) Query: 4 ALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYRE 63 + + NIR+LR ARE E L EM EKL VV+ ERRE+ AAE ER RK Q+ + Sbjct: 13 ISRTMMNIRSLRVFAREIDFEQLLEMQEKLNVVIEERREDAEREAAERAERERKRQELLQ 72 Query: 64 MLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYS 98 ++ +G P ELL R + K Sbjct: 73 LIAGEGFSPEELLGLSEE----APKSRKKTLPKPR 103 >UniRef50_Q46693 KorB protein n=6 Tax=root RepID=Q46693_ECOLX Length = 101 Score = 62.3 bits (150), Expect = 5e-09, Method: Composition-based stats. Identities = 26/79 (32%), Positives = 32/79 (40%), Gaps = 9/79 (11%) Query: 57 KLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTP 116 K + + GI A G R RPAKY D TW+G GR P Sbjct: 32 KRPAWLTAKLDAGISLE------AMKMQGVANPREHRPAKYR--DPRNAENTWSGTGRRP 83 Query: 117 AVIKKAMDEQGKSLDDFLI 135 +K+ +D G SLDD I Sbjct: 84 TWLKELLD-SGLSLDDLKI 101 Score = 46.1 bits (108), Expect = 4e-04, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 3/48 (6%) Query: 86 TKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDF 133 KR + Y D + TWTG G+ PA + +D G SL+ Sbjct: 6 KSEKRPKGEPVYR--DPDNPFNTWTGIGKRPAWLTAKLD-AGISLEAM 50 >UniRef50_B3EGH4 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Chlorobium limicola DSM 245 RepID=B3EGH4_CHLL2 Length = 97 Score = 61.9 bits (149), Expect = 6e-09, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 20/114 (17%) Query: 22 TLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAA 81 T+ L+ + ++ +NE++ + L + GI +E+ + Sbjct: 3 TIAELQAQMASIQKQINEQKA---------AGKRDALADILSKMNEFGITIHEIQRRIVP 53 Query: 82 VKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 VK+ KY E KTW+G+G+ P +K ++E+G LDD+L+ Sbjct: 54 VKAKAAK-----TVKYRL-----EDKTWSGKGKKPKWVKN-IEERGGRLDDYLV 96 >UniRef50_Q3JS38 H-NS histone family protein n=7 Tax=pseudomallei group RepID=Q3JS38_BURP1 Length = 102 Score = 61.9 bits (149), Expect = 6e-09, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 32/98 (32%), Gaps = 15/98 (15%) Query: 39 ERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYS 98 + E A + L + R + G +++ R + AKY Sbjct: 11 KIELEARLADERRAAKEAVLTEIRACVDEFGFSLDDVFPPDGGHG------RRKVRAKYY 64 Query: 99 YVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIK 136 TW+G GR P I+ GK + F ++ Sbjct: 65 DPASGA---TWSGVGREPVWIR------GKDREQFELR 93 >UniRef50_B1FTJ8 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Burkholderia graminis C4D1M RepID=B1FTJ8_9BURK Length = 115 Score = 61.2 bits (147), Expect = 9e-09, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 39/117 (33%), Gaps = 24/117 (20%) Query: 21 CTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLA 80 + L E L + E +E E L + + + I +EL Sbjct: 6 IEIAQLRAQQEALNKQLAEAKE---------RETLLVLNEIVQKMGEYRISVSELTG--- 53 Query: 81 AVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIKQ 137 + AKY TW+G+GR PA I GK ++FL+ + Sbjct: 54 ---RKVGVHANELAAKYRDPVSGS---TWSGRGRAPAWI------AGKDRNEFLMDK 98 >UniRef50_B2TGU8 Histone family protein nucleoid-structuring protein H-NS n=4 Tax=Burkholderia RepID=B2TGU8_BURPP Length = 106 Score = 61.2 bits (147), Expect = 1e-08, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 32/89 (35%), Gaps = 9/89 (10%) Query: 50 EVEERTRKLQQYREMLIADGIDPNELLNSL-AAVKSGTKAKRAQRPAKYSYVDENGETKT 108 EE L+ R + G ++ A AKY +T Sbjct: 26 RAEEAAGVLEDIRAKVATYGFTERDVFGRKRATQNGKKPQAGVPGEAKYLNPKTG---QT 82 Query: 109 WTGQGRTPAVIKKAMDEQGKSLDDFLIKQ 137 W+G+GR PA I A K+ D FLI + Sbjct: 83 WSGRGRAPAWIVSA-----KNRDRFLIAK 106 >UniRef50_A4JW45 Histone-like nucleoid-structuring protein H-NS n=1 Tax=Burkholderia vietnamiensis G4 RepID=A4JW45_BURVG Length = 101 Score = 61.2 bits (147), Expect = 1e-08, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 34/96 (35%), Gaps = 12/96 (12%) Query: 41 REEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYV 100 + A ER R ++ E++ GI +L+ + + PAKY Sbjct: 18 ELDVRIEQARARERVRAIETIHELMDTYGIKHRDLVGRNG---RRGSYQVSALPAKYRDP 74 Query: 101 DENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIK 136 + W G+G P I+ GK FLI Sbjct: 75 ATG---REWCGRGNVPLWIR------GKDRTRFLID 101 >UniRef50_C4I5I2 H-NS histone family protein n=16 Tax=pseudomallei group RepID=C4I5I2_BURPS Length = 128 Score = 60.8 bits (146), Expect = 1e-08, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 43/113 (38%), Gaps = 29/113 (25%) Query: 22 TLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAA 81 + + ++ ++ L+ ++ R+ SA LQ+ RE + G P E+ +S Sbjct: 34 SYQEYKQHVKTLQATLDRERKAISAK---------VLQEIRECIAEFGFTPQEVFSS--- 81 Query: 82 VKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFL 134 + +R KY TWTG GR P I+ GK F Sbjct: 82 --------KKKREPKYYDPVSGS---TWTGLGREPEWIR------GKDRKAFE 117 >UniRef50_C1D8I9 Putative DNA segregation ATPase FtsK/SpoIIIE-like protein n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D8I9_LARHH Length = 290 Score = 60.4 bits (145), Expect = 2e-08, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%) Query: 76 LNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDF 133 ++G +A A+R + + + TW+G+GR PA +++ +DE G SL D Sbjct: 224 HEQQEEERAGREAATARRESTIRFRHPQNQDMTWSGRGRKPAWVQEWLDE-GGSLADL 280 >UniRef50_D0KM80 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Pectobacterium wasabiae WPP163 RepID=D0KM80_PECWW Length = 107 Score = 60.0 bits (144), Expect = 2e-08, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 3/100 (3%) Query: 35 VVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQRP 94 + SA V+ +++ RE ++ N L + + + Sbjct: 9 SAAELKNLIASAQDQLVKGERERIKAVREKILQLLEGENLELEQVFPNSKPSPRVKNPVA 68 Query: 95 AKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFL 134 KY + + TW+G+G+ P K+A+ GK+ + L Sbjct: 69 PKY--AHPDNPSLTWSGRGKQPNWFKEAL-AAGKTQEQLL 105 >UniRef50_Q82UX8 H-NS histone family n=1 Tax=Nitrosomonas europaea RepID=Q82UX8_NITEU Length = 96 Score = 59.6 bits (143), Expect = 3e-08, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 49/117 (41%), Gaps = 22/117 (18%) Query: 18 ARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLN 77 + T ++E ++KL+ NE R +E + + + GI +L Sbjct: 1 MKNLTYIEIQEEIKKLQKQANEIRA---------KEIADIIADIKVKIQLYGITEKDLGF 51 Query: 78 SLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFL 134 G K K+ P Y + +TW+G+GR P IK+ + E G +L++ L Sbjct: 52 -------GEKQKKTIFPPLYKKGN-----RTWSGRGRQPGWIKEHL-EAGGNLEELL 95 >UniRef50_C4KW97 H-NS histone family protein n=28 Tax=pseudomallei group RepID=C4KW97_BURPS Length = 93 Score = 59.6 bits (143), Expect = 3e-08, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 39/105 (37%), Gaps = 14/105 (13%) Query: 29 MLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKA 88 M L+++ AA ++ R+ L + + ++ + E+ ++G Sbjct: 1 METYLDLLAEREALMIKLDAARMQARSAALSEVKRIVEEFELTTQEVFG-----RAGVLR 55 Query: 89 KRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDF 133 +R + KY TW G+GR P+ I GK F Sbjct: 56 RRGKLKPKYRDPKTGA---TWNGRGRPPSWI------AGKDRAAF 91 >UniRef50_B2JM34 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Burkholderia phymatum STM815 RepID=B2JM34_BURP8 Length = 191 Score = 59.6 bits (143), Expect = 3e-08, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 15/115 (13%) Query: 24 ETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVK 83 TLE + ++ ++ + A A ++ T L+ R ++ + ++ L K Sbjct: 2 ATLEALQARI------KKLQAQAEAIVSKKSTAALETIRALMAKHDLTTADIDAHLGHKK 55 Query: 84 SGTKAKRAQRPAK---YSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 G A ++ K Y+D TWTG GR PA I A K +L+ Sbjct: 56 RGRPALKSAGVQKKGVARYIDPK-TGATWTGHGRAPAWIAGA-----KDRSKYLV 104 Score = 45.0 bits (105), Expect = 7e-04, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 8/68 (11%) Query: 68 DGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQG 127 G ++ +G + +PAKY + + TW+G+G PA + Sbjct: 105 AGASVPAATHAAVKGGTGNGQPKGPQPAKYRHPETGA---TWSGRGPAPAWLAGE----- 156 Query: 128 KSLDDFLI 135 K + FLI Sbjct: 157 KDRNKFLI 164 >UniRef50_B2TE45 Histone family protein nucleoid-structuring protein H-NS n=7 Tax=Burkholderia RepID=B2TE45_BURPP Length = 283 Score = 59.2 bits (142), Expect = 4e-08, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 41/121 (33%), Gaps = 23/121 (19%) Query: 25 TLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNEL--------- 75 TLE++ KL ++ + A + + Q R++++ G+ ++ Sbjct: 3 TLEQIQAKL------KKLQAQADVLLARKAQVAVDQIRDLMLKHGLTTADIEAKAKARRA 56 Query: 76 LNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 L + AKY TWTG GR P I K FLI Sbjct: 57 ARGLNGGGKAKAVSSGKAVAKYRDHKTGA---TWTGHGRAPGWIASV-----KDRTQFLI 108 Query: 136 K 136 + Sbjct: 109 E 109 Score = 43.8 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 8/59 (13%) Query: 77 NSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 ++ K + +P KY TW+G+G PA + K FLI Sbjct: 120 AAVTHAKGSKGQPKGAQPPKYINPKTGA---TWSGRGPAPAWLASV-----KDRSKFLI 170 >UniRef50_B1FNZ3 Histone family protein nucleoid-structuring protein H-NS n=2 Tax=Burkholderia ambifaria IOP40-10 RepID=B1FNZ3_9BURK Length = 115 Score = 58.8 bits (141), Expect = 5e-08, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 41/113 (36%), Gaps = 15/113 (13%) Query: 24 ETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVK 83 E++ + + + E A +ER L RE + G+ E+ Sbjct: 2 NEYEQLKARADALAKE------VERARCQERQGVLDDVREKVGRYGLQVVEIYGEAQVRA 55 Query: 84 SGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIK 136 R + KY + TWTG+G P I+ G++ +FLI+ Sbjct: 56 LQCLGNRRKIAPKYRDPESGA---TWTGRGLEPRWIR------GRNRREFLIE 99 >UniRef50_A9BLZ8 Histone family protein nucleoid-structuring protein H-NS n=7 Tax=Burkholderiales RepID=A9BLZ8_DELAS Length = 98 Score = 58.5 bits (140), Expect = 6e-08, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 39/101 (38%), Gaps = 10/101 (9%) Query: 35 VVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQRP 94 ++ + E+ A +T + + + M+ G+ ++ S A K KR+ Sbjct: 8 LLQQKAELEKKIDALIQHAKTDAIAEAKAMVQQYGLTKEDVFPS-AKSKPDKAGKRSVGE 66 Query: 95 AKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 K+ + TWTG+G+ P I+ GK I Sbjct: 67 PKFRNPETGA---TWTGRGKPPKWIE------GKDRASLAI 98 >UniRef50_C9NQ13 Putative uncharacterized protein n=1 Tax=Vibrio coralliilyticus ATCC BAA-450 RepID=C9NQ13_9VIBR Length = 79 Score = 58.5 bits (140), Expect = 6e-08, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 39/87 (44%), Gaps = 9/87 (10%) Query: 1 MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQ 60 MS L L ++R LRA R +LE LE L L+ VV E R ER L Sbjct: 1 MSNQLATLRHVRRLRACLRSLSLEELEVALSNLQTVVQEHR---------TREREAALAS 51 Query: 61 YREMLIADGIDPNELLNSLAAVKSGTK 87 E + G+ +E+L L A+ S + Sbjct: 52 IVERIRCSGLSVDEILTGLKALTSRSA 78 >UniRef50_Q6Y661 BphA n=2 Tax=Burkholderia pseudomallei RepID=Q6Y661_BURPS Length = 126 Score = 58.5 bits (140), Expect = 7e-08, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 15/101 (14%) Query: 34 EVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQR 93 E++ + R E+ A + +E R ++ RE++ GID V++G + +R Sbjct: 14 ELLAQKTRLEKEAENSRLEAEKRICERVREIMAEYGIDVE--------VRAGGSKRETRR 65 Query: 94 PAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFL 134 A Y + +TW+G+G P I GK FL Sbjct: 66 HAVPRYWNPE-TGQTWSGRGAEPKWIV------GKDRSRFL 99 >UniRef50_A0B4Y5 Histone family protein nucleoid-structuring protein H-NS n=5 Tax=Burkholderia RepID=A0B4Y5_BURCH Length = 110 Score = 58.1 bits (139), Expect = 8e-08, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 48/117 (41%), Gaps = 19/117 (16%) Query: 21 CTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLA 80 TL + +L+ + A +E+ L ++E + I E+L++L Sbjct: 1 MDAPTLPALRAELDAL------NIELARVRAQEKKAALAAFKEQVTLYDITQQEVLSALG 54 Query: 81 AVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIKQ 137 ++ + A + D + ++W+G+G P + GK+LDD+ I + Sbjct: 55 YLQPKRRRAAA------QFYDPS-SGRSWSGRGPRPKWLV------GKNLDDYRIDR 98 >UniRef50_C8N836 Putative uncharacterized protein n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8N836_9GAMM Length = 102 Score = 58.1 bits (139), Expect = 9e-08, Method: Composition-based stats. Identities = 24/115 (20%), Positives = 40/115 (34%), Gaps = 13/115 (11%) Query: 21 CTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLA 80 +LE L ++ L E + R L + + + Sbjct: 1 MSLEDLFNQVDNLNNDDFEALINHVDKQKKRRAR-DILAEAQRQASRF---------ISS 50 Query: 81 AVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 A +R P +Y + + ++TW+G GR P K+ + E G S D LI Sbjct: 51 AEGGKPATQRTAMPPRYR--NPHNHSQTWSGMGRQPQWFKENL-EHGMSEHDMLI 102 >UniRef50_D0IZE2 Histone-like nucleoid-structuring protein H-NS n=4 Tax=Comamonadaceae RepID=D0IZE2_COMTE Length = 112 Score = 57.7 bits (138), Expect = 1e-07, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 37/103 (35%), Gaps = 16/103 (15%) Query: 34 EVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQR 93 E++ + ++ A E L ++++ G ++ K + Sbjct: 6 ELIAQKNALDKRIEEARSTEAKEALATVKQLIATFGFTSQQVFPWKPEEKK-------KV 58 Query: 94 PAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIK 136 A+Y + TWTG+G+ P I+ GK + IK Sbjct: 59 EARYYDPESGA---TWTGRGKPPKWIE------GKDRGQYEIK 92 >UniRef50_Q5NX28 Histone-like nucleoid-structuring protein H-NS n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5NX28_AZOSE Length = 130 Score = 57.7 bits (138), Expect = 1e-07, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 53/133 (39%), Gaps = 27/133 (20%) Query: 18 ARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLN 77 + +L L+++ ++ ++ R ++ + ++Q ++M G+D +E+L Sbjct: 4 LKNLSLPELKKLSVAVQKELDRR---------TLQSKKALIKQVQQMAAEHGLDADEMLA 54 Query: 78 -------------SLAAVKSGTKAKRAQRPAKYS----YVDENGETKTWTGQGRTPAVIK 120 S A + + K+A K Y + + W+G+GR P+ + Sbjct: 55 EVGSSGREGSSVKSGAGKAAPGRKKKAPAVKKEKLPPVYWNPVNAQEGWSGRGRKPSWVI 114 Query: 121 KAMDEQGKSLDDF 133 + E G L+ Sbjct: 115 TFL-ENGGDLESL 126 >UniRef50_A4JVX9 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Burkholderia vietnamiensis G4 RepID=A4JVX9_BURVG Length = 98 Score = 57.3 bits (137), Expect = 1e-07, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 36/103 (34%), Gaps = 14/103 (13%) Query: 34 EVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQR 93 ++V + E AA + R L Q E++ I PNEL + Sbjct: 8 QLVAELKELERKIIAARAQARKDALAQIAELMYEFDIKPNEL-----RRPRNIRYNVQPT 62 Query: 94 PAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIK 136 +Y TW+G+G PA I + F+IK Sbjct: 63 RPRYRDPVSGA---TWSGRGHVPAWIAY------QDRSRFVIK 96 >UniRef50_A1KAI1 Putative trans-acting regulatory protein HvrA n=1 Tax=Azoarcus sp. BH72 RepID=A1KAI1_AZOSB Length = 119 Score = 57.3 bits (137), Expect = 1e-07, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 41/127 (32%), Gaps = 19/127 (14%) Query: 18 ARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLN 77 +L L + R E R L++ ++M +G+ ++L+ Sbjct: 3 LGTLSLTELRRLQS---------RVEAEIRRRSDSARRDLLKKMQKMAADEGLSLSDLIG 53 Query: 78 SLAAVKSGTKAKRAQR---------PAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGK 128 S + K + Y W+G+GR P + QGK Sbjct: 54 SAPVPATEKKPAAKRGRAAAGKKKEAPTVKYRHPETPGVGWSGRGRKPQWALDWI-AQGK 112 Query: 129 SLDDFLI 135 S+++ + Sbjct: 113 SIEELAV 119 >UniRef50_Q3JS54 BphA n=11 Tax=Burkholderia pseudomallei RepID=Q3JS54_BURP1 Length = 151 Score = 57.3 bits (137), Expect = 1e-07, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 37/116 (31%), Gaps = 24/116 (20%) Query: 19 RECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNS 78 + L + KLE V R E E RE++ GID Sbjct: 33 KMIAFRDLLALQTKLEKEVENSRLEAEKRICER---------VREIMAEYGIDAE----- 78 Query: 79 LAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFL 134 G + R + +Y + +TW+G+G P I GK FL Sbjct: 79 -VRAGGGRRETRRRAVPRYWNPETG---QTWSGRGGEPKWIV------GKDRSQFL 124 >UniRef50_C9Y6P0 Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9Y6P0_9BURK Length = 109 Score = 57.3 bits (137), Expect = 1e-07, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 44/122 (36%), Gaps = 22/122 (18%) Query: 21 CTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLA 80 + L+ +E+L A AA V E + +E + G+ ++L Sbjct: 3 TSYRDLKAQIEELT---------AKAEAARVSEVAAVVADIKEKIEEYGLTASDLGFKTD 53 Query: 81 AVKSGT-------KAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDF 133 + ++ KY + + W+G+GR P + + K+LDD+ Sbjct: 54 KGTRKSVGQAIAEANEKKSVEPKYKGPN----GELWSGRGRAPVWTQNLPTD--KTLDDY 107 Query: 134 LI 135 + Sbjct: 108 KV 109 >UniRef50_A1K1V6 Putative trans-acting regulatory protein HvrA n=1 Tax=Azoarcus sp. BH72 RepID=A1K1V6_AZOSB Length = 132 Score = 57.3 bits (137), Expect = 2e-07, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 42/124 (33%), Gaps = 19/124 (15%) Query: 18 ARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNE--- 74 + TL L + E+ ++ + +R L++ + A+G+ E Sbjct: 5 LKSYTLPQLRALREQTARAIDRLQ---------RSQRETLLRRLSALARAEGLTLAELAE 55 Query: 75 ----LLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSL 130 + + K R P KY + W+G+GR P + + G S+ Sbjct: 56 DAAAMKGAERPRKHPRTTPRQPLPVKYR--HPSNRALAWSGRGRQPHWVAAWL-ANGGSM 112 Query: 131 DDFL 134 D Sbjct: 113 DALA 116 >UniRef50_Q46U69 Putative uncharacterized protein n=4 Tax=Cupriavidus RepID=Q46U69_RALEJ Length = 108 Score = 56.9 bits (136), Expect = 2e-07, Method: Composition-based stats. Identities = 16/107 (14%), Positives = 38/107 (35%), Gaps = 20/107 (18%) Query: 49 AEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGT-------------------KAK 89 + + RE + + ++L+ + + A Sbjct: 3 ESDSAKLAAIAWIREQMDNYALTLDDLIAAGCFDGEPSHGDVEAGEMPGAPDVPAVMAAT 62 Query: 90 RAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIK 136 A +P K + N ++W G G P +++A++ G+S+D + + Sbjct: 63 AAPQPPKKGPIYRNALGQSWDGTGEYPDWLQRAVN-AGQSIDFYRVD 108 >UniRef50_C5T058 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T058_ACIDE Length = 118 Score = 56.2 bits (134), Expect = 3e-07, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 36/105 (34%), Gaps = 6/105 (5%) Query: 34 EVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQR 93 E+ R + E+ + + +E + GI +L + K+G K + Sbjct: 12 EIDAEIARLQNEREQLREAEKAGVVARMKEAVAYYGITAADLGLGVTTRKAGAKKASEAK 71 Query: 94 PAKY-----SYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDF 133 K ++ W+G G P +A+ GK+ D Sbjct: 72 APKAGRVAGRIKYKDDAGHAWSGYGPKPKWFTEAL-ASGKTEADL 115 >UniRef50_A0Y514 DNA-binding protein, H-NS family n=2 Tax=Alteromonadales RepID=A0Y514_9GAMM Length = 100 Score = 56.2 bits (134), Expect = 3e-07, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 49/110 (44%), Gaps = 19/110 (17%) Query: 12 RTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGID 71 + +RA + +L LE+ + + +++ +++ A + ++L G+ Sbjct: 2 KEVRAFIKTASLTELEKAQQLVTDAISKYTQQQKAKQ-----------EVLDLLKEKGLT 50 Query: 72 PNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKK 121 +L ++ A KR + AKY ++ +GE WTG+GR P + Sbjct: 51 LEDLQDTSAD-------KRTKVKAKYR-IEVDGEIIEWTGRGRRPKAFEN 92 >UniRef50_B2JR07 Histone family protein nucleoid-structuring protein H-NS n=12 Tax=Burkholderia RepID=B2JR07_BURP8 Length = 112 Score = 56.2 bits (134), Expect = 4e-07, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 11/85 (12%) Query: 51 VEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWT 110 +R + R + GI+ ++L ++A + K R Y +TW+ Sbjct: 3 ERKRDSMVAYLRRRMAEVGIELDDLAAAIAEDQVRQKTAR------YRS----ATGETWS 52 Query: 111 GQGRTPAVIKKAMDEQGKSLDDFLI 135 G G P +K+A+ G+S+D F + Sbjct: 53 GDGEMPQWLKQAIS-AGQSMDHFAV 76 >UniRef50_C9CRV4 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Silicibacter sp. TrichCH4B RepID=C9CRV4_9RHOB Length = 107 Score = 56.2 bits (134), Expect = 4e-07, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 39/95 (41%), Gaps = 6/95 (6%) Query: 40 RREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSY 99 ++ +E+ + L + E+ + +++ S AK Y Sbjct: 18 KQIDETLENKLKQNMKNALAEMVEVAKKHEVAFADVIEVYERRNSRKLAKVGLI-----Y 72 Query: 100 VDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFL 134 + N ++TWTG+GR P + + + E G + DD L Sbjct: 73 RNPNNPSQTWTGKGRRPLWVLELLRE-GMTFDDML 106 >UniRef50_B1Z177 H-NS histone family protein n=4 Tax=Burkholderia ambifaria RepID=B1Z177_BURA4 Length = 105 Score = 55.8 bits (133), Expect = 4e-07, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 35/101 (34%), Gaps = 19/101 (18%) Query: 40 RREEESAAAAEVEERTR----KLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPA 95 ++ V ER L + R+ + G ++ + + + Sbjct: 8 MEKKALLEEQLVRERLAIATMVLLEIRQCIEEFGFGVKDVFPAQSGAPGKRRR------V 61 Query: 96 KYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIK 136 KY + ++W+G GR P ++ G+ D FLI Sbjct: 62 KYFNPETG---QSWSGVGREPVWLR------GQDRDRFLID 93 >UniRef50_A0KCC6 Histone family protein nucleoid-structuring protein H-NS n=18 Tax=Burkholderia cepacia complex RepID=A0KCC6_BURCH Length = 109 Score = 55.8 bits (133), Expect = 4e-07, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 50/115 (43%), Gaps = 22/115 (19%) Query: 23 LETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAV 82 L+ LE L L + ++E + +E+ L ++E + GI E+L++L + Sbjct: 5 LQELEAQLRDLNIKLSEAK---------QKEKQAALAAFKEQVELLGISQQEVLSALGYI 55 Query: 83 KSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIKQ 137 + + PAKY ++W+G+G P ++ GK L+ + + Sbjct: 56 VQRKR----KAPAKYYDPSTG---RSWSGRGPRPKWLE------GKDLETLAVDR 97 >UniRef50_B1XWK6 Histone family protein nucleoid-structuring protein H-NS n=2 Tax=Burkholderiales Genera incertae sedis RepID=B1XWK6_LEPCP Length = 123 Score = 55.8 bits (133), Expect = 4e-07, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 44/130 (33%), Gaps = 27/130 (20%) Query: 26 LEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSG 85 + + L ++ + + + E A A +E + + +E + + +L + A Sbjct: 1 MAKSLAQVNAQIAKLQREADALKA--KEVAGVVSRIKEAIAIYSLTSADLFDDAVAAVKP 58 Query: 86 TKAKRAQRPA--------------------KYSYVDENGETKTWTGQGRTPAVIKKAMDE 125 ++ A KY TWTG G+ P K A+ E Sbjct: 59 AARQKRTVAAAPVVGKKAPKAAAKKAESQIKYRDE----AGHTWTGHGKRPNWFKAAI-E 113 Query: 126 QGKSLDDFLI 135 GK +D + Sbjct: 114 AGKKPEDLAV 123 >UniRef50_A9EH02 Histone-like protein of HNS family n=4 Tax=Rhodobacteraceae RepID=A9EH02_9RHOB Length = 118 Score = 55.4 bits (132), Expect = 5e-07, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 53/124 (42%), Gaps = 12/124 (9%) Query: 15 RAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNE 74 + + + + + LE++L ++ ++ + + A + + G N+ Sbjct: 4 KNELKALSRKELEKLLADVKKALSSVQARDQREAKKAATKAA---------AEFGFSLND 54 Query: 75 LLNSLA--AVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDD 132 + + A K TKAK A++ +K + + +TWTG+GR P ++ + G + Sbjct: 55 ITETAALVPKKRKTKAKAAKKQSKPVFFNPEDTNQTWTGKGRQPNWYREQI-ATGMDPEA 113 Query: 133 FLIK 136 IK Sbjct: 114 MRIK 117 >UniRef50_Q46MF0 Histone-like nucleoid-structuring protein H-NS n=3 Tax=Cupriavidus RepID=Q46MF0_RALEJ Length = 589 Score = 55.4 bits (132), Expect = 6e-07, Method: Composition-based stats. Identities = 16/106 (15%), Positives = 39/106 (36%), Gaps = 13/106 (12%) Query: 34 EVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAV---KSGTKAKR 90 ++ + + + +++ ++ + + ++ + ++ + Sbjct: 491 SSLLAQLASVNAQLEQLRATVPKVVKEIQQWMQEYDLSIEDIAGKPSVKPAARAVPTKTK 550 Query: 91 AQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIK 136 A P +Y +TW+G+GR PA I GK + FLI Sbjct: 551 AAPPPRYRNPKTG---QTWSGRGRAPAWI-------GKRRERFLID 586 >UniRef50_B4SG34 Histone-like nucleoid-structuring protein H-NS n=2 Tax=Chlorobium/Pelodictyon group RepID=B4SG34_PELPB Length = 101 Score = 55.0 bits (131), Expect = 8e-07, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 48/110 (43%), Gaps = 10/110 (9%) Query: 28 EMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTK 87 L +++ + + +++ ER L+ + + A I EL K+ Sbjct: 2 STLTEIQAQIADLQKQAQEII--NIERKAILEDIKAKMAAYNITMEEL---ERKGKAVKS 56 Query: 88 AKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIKQ 137 A R+ P KY ET+ W G+G P +K ++ G++++ + +++ Sbjct: 57 APRSPSPIKYK----KSETEYWVGRGPKPQWVK-GIESNGENIEIYRVQE 101 >UniRef50_Q397M1 Histone-like nucleoid-structuring protein H-NS n=1 Tax=Burkholderia sp. 383 RepID=Q397M1_BURS3 Length = 114 Score = 54.2 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 37/104 (35%), Gaps = 12/104 (11%) Query: 34 EVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQR 93 ++VV +E A ER + ++ I +L+ + S Sbjct: 12 QLVVELAELDEEIERARARERVDAIAAVHSLMDTYAIKHRDLVGRNGSRGSYIVK---VL 68 Query: 94 PAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIKQ 137 PA+Y K W+G+G P I+ GK F++ + Sbjct: 69 PARYRDP---ASGKEWSGRGNAPLWIR------GKDRRQFVVVK 103 >UniRef50_Q3JFX1 H-NS histone family protein n=27 Tax=Burkholderia RepID=Q3JFX1_BURP1 Length = 113 Score = 54.2 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 19/108 (17%) Query: 28 EMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTK 87 E+L + + + NE A + +R E+L G+D +++N + + Sbjct: 6 ELLAQWDDLKNEIDRAREREAQRLAQR------VLELLAESGVDVRDMMNPRPRGQGRGR 59 Query: 88 AKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 KY TW+G+GR P + G++ FLI Sbjct: 60 R----ITPKYWNPQTGA---TWSGRGRMPKWLI------GQNPRQFLI 94 >UniRef50_B2T963 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Burkholderia phytofirmans PsJN RepID=B2T963_BURPP Length = 89 Score = 54.2 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 33/109 (30%), Gaps = 21/109 (19%) Query: 29 MLEKLEVVVNERRE-EESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTK 87 M E + R E A E + + + R+ + G+ P +L + Sbjct: 1 MAENYRQIKARIRALEAQAEQLRRHELRQVVAEMRQKIRDYGLTPEQLFGPNLSDL---- 56 Query: 88 AKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIK 136 Y +TW G GR P IK GK F + Sbjct: 57 ---------VRYRHPE-TGETWNGMGRPPNWIK------GKDRGPFRVD 89 >UniRef50_B1TFR0 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Burkholderia ambifaria MEX-5 RepID=B1TFR0_9BURK Length = 111 Score = 53.8 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 13/74 (17%) Query: 61 YREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIK 120 +M+ G+D ++ + + S + KY KTW+G+GR P ++ Sbjct: 47 IVKMMEVYGLDLEQIKDGVERQSSPHRE----VEPKYMDPQTG---KTWSGRGRMPLWMR 99 Query: 121 KAMDEQGKSLDDFL 134 K +D+L Sbjct: 100 D------KRKEDYL 107 >UniRef50_C4KLJ2 Putative uncharacterized protein n=2 Tax=Burkholderia pseudomallei RepID=C4KLJ2_BURPS Length = 121 Score = 53.5 bits (127), Expect = 2e-06, Method: Composition-based stats. Identities = 20/102 (19%), Positives = 42/102 (41%), Gaps = 11/102 (10%) Query: 33 LEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQ 92 L+++ R +E AA + + +M++ I +++ ++L + + Sbjct: 22 LDLMKRHRALQEEIAAVRRHDTREIVTCIVQMMMMYEICLDDISDALPRQQRLGLR--RR 79 Query: 93 RPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFL 134 R KY + +TW+G GR P + G+ +FL Sbjct: 80 RTPKYMDPESG---RTWSGYGRPPRWM------AGRDPAEFL 112 >UniRef50_B1XXE8 Putative uncharacterized protein n=1 Tax=Leptothrix cholodnii SP-6 RepID=B1XXE8_LEPCP Length = 98 Score = 53.5 bits (127), Expect = 2e-06, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 34/86 (39%), Gaps = 5/86 (5%) Query: 51 VEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWT 110 E+ +++ R ++ I P EL A A Y + TW Sbjct: 7 EPEKEAAIRKIRRLMAFWSISPTELRGRGVPAPRPAPAAAAVAR--YRHPVSGS---TWD 61 Query: 111 GQGRTPAVIKKAMDEQGKSLDDFLIK 136 G+G P +++A+ +G ++D ++ Sbjct: 62 GEGPQPQWLREALLYEGYTVDQLRVR 87 >UniRef50_B1KCF0 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Burkholderia cenocepacia MC0-3 RepID=B1KCF0_BURCC Length = 111 Score = 53.1 bits (126), Expect = 2e-06, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 43/113 (38%), Gaps = 19/113 (16%) Query: 23 LETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAV 82 + L E E+L + R E+ + +++ R++ +D + +A Sbjct: 8 YQKLLEQYEQLTQEIERERAVETERLVNL-----VIERVRQVFAEFHLDID-----VAPR 57 Query: 83 KSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 KR + KY + +TW G+GRTP + GK + + + Sbjct: 58 AVQEPQKRKKLTPKYWNPETG---QTWCGRGRTPLWM------AGKDRERYRV 101 >UniRef50_B1Z6F8 Putative HNS-like protein n=1 Tax=Burkholderia ambifaria MC40-6 RepID=B1Z6F8_BURA4 Length = 111 Score = 52.3 bits (124), Expect = 5e-06, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 43/105 (40%), Gaps = 11/105 (10%) Query: 33 LEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQ 92 LE++ + + E + ++ EM++ I+P+ + +A K R++ Sbjct: 16 LEMIKRYQSLKHEIDRIRQRETQQIIRCIVEMMVVYEINPH--VVEVALSKRQRGGGRSK 73 Query: 93 RPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIKQ 137 +Y +TW G+GR P + G+ DFL+ + Sbjct: 74 AIPRYMDPVTG---RTWAGRGRRPLWM------GGRDPADFLLPE 109 >UniRef50_C5S5I1 Putative uncharacterized protein n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5S5I1_CHRVI Length = 127 Score = 52.3 bits (124), Expect = 5e-06, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 51/111 (45%), Gaps = 7/111 (6%) Query: 20 ECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSL 79 +LE ++ LE+ + + + E+ E + ++Q R +++ +G DP E++N + Sbjct: 5 NLSLEEIQRQLEEADN--KKAQLEKLLKDKREEGKGAVVEQIRNIILDNGYDPEEIMNLV 62 Query: 80 AAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSL 130 + + R R YVD + ++ +G P +K+ M +QG Sbjct: 63 LRRRRKLVSDRQYR----RYVDPDNPENVYS-RGVLPGWMKEKMAQQGYDP 108 >UniRef50_B0RRY7 Histone-like nucleoid-structuring protein n=13 Tax=Xanthomonas RepID=B0RRY7_XANCB Length = 193 Score = 51.9 bits (123), Expect = 5e-06, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 34/103 (33%), Gaps = 12/103 (11%) Query: 29 MLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNE---------LLNSL 79 K +++ ++ EE E + +L N L + Sbjct: 71 AQAKAKLLDELQKLEEQEKTERASEASSAHATIVSLLEQFAGHFNTKQRNDIAAYLGTTT 130 Query: 80 AAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKA 122 A K K R++ KY G +TW+G+GRTP Sbjct: 131 TARKDVVKTGRSEVRPKYELP---GTGETWSGRGRTPKAFAAW 170 >UniRef50_A5EX59 Putative uncharacterized protein n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EX59_DICNV Length = 101 Score = 51.9 bits (123), Expect = 6e-06, Method: Composition-based stats. Identities = 21/116 (18%), Positives = 44/116 (37%), Gaps = 25/116 (21%) Query: 21 CTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLA 80 + + E ++ ++ +R E A A R ++ +++ Sbjct: 11 LSNDDFETLINYIDKERKKRAREIIAEAQRQASRFA----------------QDIAPTVS 54 Query: 81 AVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIK 136 + ++RP K + + + +TW+G GR P K +D+ G + LIK Sbjct: 55 ------RKTASKRPPK--FANPDNPEQTWSGMGRQPDWYKAYIDKGGNEKN-MLIK 101 >UniRef50_A1W6B6 Nucleoid protein H-NS n=1 Tax=Acidovorax sp. JS42 RepID=A1W6B6_ACISJ Length = 117 Score = 51.5 bits (122), Expect = 8e-06, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 41/110 (37%), Gaps = 5/110 (4%) Query: 28 EMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTK 87 E+ R ++ E+ + + +E + GI +L S+ K+ T Sbjct: 6 SQRTTQEIEAEIARLQKERDQLREGEKAGVVSRMKEAIAYYGITAADLGLSVTKRKARTG 65 Query: 88 AKRAQRP----AKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDF 133 +A+ A ++ +TW+G G P +A+ GK+ D Sbjct: 66 VAQAKNSKVQRAASRIKYKDDAGRTWSGYGPKPRWFTEAL-ASGKTEADL 114 >UniRef50_UPI00016A50FD H-NS histone family protein n=1 Tax=Burkholderia ubonensis Bu RepID=UPI00016A50FD Length = 99 Score = 50.4 bits (119), Expect = 2e-05, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 33/99 (33%), Gaps = 15/99 (15%) Query: 39 ERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYS 98 + + E + + + A GI ++ S R +R AKY Sbjct: 11 KAKLEHQLELERCRLFESVVAEIVACVEAFGITERDIFKSERIDT------RKRRKAKYF 64 Query: 99 YVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIKQ 137 TW+G GR P IK GK F++ + Sbjct: 65 DPTTG---CTWSGVGREPQWIK------GKDRSAFVLDE 94 >UniRef50_C0DYC0 Putative uncharacterized protein n=1 Tax=Eikenella corrodens ATCC 23834 RepID=C0DYC0_EIKCO Length = 97 Score = 50.0 bits (118), Expect = 2e-05, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 42/109 (38%), Gaps = 14/109 (12%) Query: 28 EMLEKLEVVVNERREEESAAAAEVE-ERTRKLQQYREMLIADGIDPNELLNSLAAVKSGT 86 E L+ ++ +++ E + ER +K+ Q ++ I ++ L +S Sbjct: 2 AARETLDQLLEQKKSLEDRIQRRLASERKKKVNQILAIMRDFEISVADIEAGLKEKQSR- 60 Query: 87 KAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI 135 +Y TW G G+ P I +A E+G + FL+ Sbjct: 61 --------PQYRNPKTGA---TWGGVGKRPKWIVEA-QEKGIDIKKFLV 97 >UniRef50_B9B7B2 H-NS histone family protein n=1 Tax=Burkholderia multivorans CGD1 RepID=B9B7B2_9BURK Length = 103 Score = 48.8 bits (115), Expect = 5e-05, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 38/108 (35%), Gaps = 19/108 (17%) Query: 30 LEKLEVVVNERRE-EESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKA 88 ++K + + E EE A R L + + D EL + Sbjct: 1 MDKFARYIQRKSELEEQIAKYRALVRDEILIEIMLAIEEFHFDAEELFPAG--------- 51 Query: 89 KRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIK 136 +R K Y D W+G+GR P +K GK+ DF ++ Sbjct: 52 --KKRKVKPRYFDPQ-SGAVWSGRGREPRWLK------GKNRRDFELE 90 >UniRef50_B2T9F5 Putative uncharacterized protein n=9 Tax=Burkholderia RepID=B2T9F5_BURPP Length = 87 Score = 48.4 bits (114), Expect = 6e-05, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 11/81 (13%) Query: 53 ERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQ 112 R R + R + GI L ++ A + T+A Y N TW G Sbjct: 16 ARERLVAWIRRRMDEYGITIEALAEAIEADAAATRA------VMYRDAYGN----TWDGH 65 Query: 113 GRTPAVIKKAMDEQGKSLDDF 133 G P + +A+ G+++D F Sbjct: 66 GDKPDWLARAI-YAGQNIDHF 85 >UniRef50_Q2P0K4 Virulence regulator n=8 Tax=Xanthomonas RepID=Q2P0K4_XANOM Length = 130 Score = 47.7 bits (112), Expect = 1e-04, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 35/95 (36%), Gaps = 10/95 (10%) Query: 35 VVVNERREEESAAAAEV-EERTRKLQQYREMLIADGIDPN-----ELLN-SLAAVKSGTK 87 ++ E R+ E A + Q E+L G N ++ + ++ G Sbjct: 16 QLLEELRKLEQEEAQLKYAQTLEAFDQVIEVLTQFGNRFNAKQKSQIASLAMTGKTKGPL 75 Query: 88 AKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKA 122 + AKY +TW+G+GRTP K Sbjct: 76 SSTGDVVAKYWIPHSG---ETWSGRGRTPKAFKAW 107 >UniRef50_B2JWB5 Putative uncharacterized protein n=1 Tax=Burkholderia phymatum STM815 RepID=B2JWB5_BURP8 Length = 84 Score = 43.8 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 30/75 (40%), Gaps = 11/75 (14%) Query: 51 VEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWT 110 +R + R + GI+ N+L ++A + + A+Y TW+ Sbjct: 3 ERKRDSMVANLRRRMAEVGIELNDLAAAIAEDEI-------KEAARYRS----ATGDTWS 51 Query: 111 GQGRTPAVIKKAMDE 125 G G P +K+A+ Sbjct: 52 GDGEMPQWLKQAISA 66 >UniRef50_B4EME8 Putative DNA-binding phage protein n=1 Tax=Burkholderia cenocepacia J2315 RepID=B4EME8_BURCJ Length = 108 Score = 43.4 bits (101), Expect = 0.002, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 42/119 (35%), Gaps = 21/119 (17%) Query: 29 MLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADG--IDPNEL--------LNS 78 M + E++ + AA+ E RT LQ + G + L Sbjct: 1 MSKLAELLKQQEELAARIEAAQAEARTEGLQTVATLADQLGEPFAVEVVKMLGERFNLGE 60 Query: 79 LAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIKQ 137 A+ PAKY + D + W+G+GR P + G ++LI+Q Sbjct: 61 FFRTSRKRGKMVARLPAKYRHPD----GRVWSGKGRAPGWL------AGHE-AEYLIQQ 108 >UniRef50_B5EWD6 Putative uncharacterized protein n=1 Tax=Vibrio fischeri MJ11 RepID=B5EWD6_VIBFM Length = 87 Score = 42.7 bits (99), Expect = 0.004, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 1/87 (1%) Query: 1 MSEALKILNNIRTLRAQAREC-TLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQ 59 M E K L N R+L AR T E + ++E+L + +R++EE + E R K+ Sbjct: 1 MKELKKTLLNQRSLINFARSMLTTEETQLIIERLSIYNTQRKQEEEKKQKDNEIRAEKMN 60 Query: 60 QYREMLIADGIDPNELLNSLAAVKSGT 86 Q+ + L +G+ +L ++ Sbjct: 61 QFIQQLETEGLSITDLQFHISNRNRAR 87 >UniRef50_A3T2T5 Histone-like protein, HNS family protein n=1 Tax=Sulfitobacter sp. NAS-14.1 RepID=A3T2T5_9RHOB Length = 95 Score = 42.7 bits (99), Expect = 0.004, Method: Composition-based stats. Identities = 15/95 (15%), Positives = 32/95 (33%), Gaps = 18/95 (18%) Query: 21 CTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLA 80 +L L++M + + ++ E ++ + + G EL+ + Sbjct: 9 LSLGELKKMRKDVAKAIS---------TYEDRQKAEARSKVEALAQDLGYSLAELVGTET 59 Query: 81 AVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRT 115 K RA KY + + + W +GR Sbjct: 60 ------KTARAPAQPKYRHPNL---SLAWCSRGRQ 85 >UniRef50_D1TJ24 Putative uncharacterized protein n=1 Tax=Burkholderia sp. CCGE1002 RepID=D1TJ24_9BURK Length = 82 Score = 42.3 bits (98), Expect = 0.005, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 23/72 (31%), Gaps = 13/72 (18%) Query: 65 LIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMD 124 + GI L S+ P Y + W G G P ++ A + Sbjct: 1 MEEFGITLEALAESI--------QHDVDHPPLYR----DARGNEWNGLGSMPDWLRAARN 48 Query: 125 EQGKSLDDFLIK 136 G S + F I+ Sbjct: 49 -AGVSPEFFRIE 59 >UniRef50_B0RPM6 Putative uncharacterized protein n=1 Tax=Xanthomonas campestris pv. campestris str. B100 RepID=B0RPM6_XANCB Length = 165 Score = 42.3 bits (98), Expect = 0.005, Method: Composition-based stats. Identities = 19/109 (17%), Positives = 41/109 (37%), Gaps = 11/109 (10%) Query: 28 EMLEKLEVVVNERREEESAAAAEVEERTRKL-----QQYREMLIADGIDPNELLNSLAAV 82 + LE + ++ +R + A +++ + L +Q +++ ++ + Sbjct: 14 KQLEARKRLIEKRDADVPKALEVLQKYAQVLTAVQRRQVAKLIGDAVPAAVQVARKGGGL 73 Query: 83 KSGTK-AKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAM-DEQGKS 129 ++G K K KY +TW G+GR P +GK Sbjct: 74 QAGPKGRKLGPVAPKYRIP----SGETWAGRGRMPIAFTAWFASVEGKD 118 >UniRef50_A4WW11 Putative uncharacterized protein n=3 Tax=Rhodobacter sphaeroides RepID=A4WW11_RHOS5 Length = 110 Score = 42.3 bits (98), Expect = 0.005, Method: Composition-based stats. Identities = 15/121 (12%), Positives = 37/121 (30%), Gaps = 31/121 (25%) Query: 14 LRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPN 73 ++ T + L ++ ++ ++ + + + + G Sbjct: 19 MKLNIERLTRDELIDLYGRISAALD----ACESRQIARTAKEEA-ARIKGEAGESG---- 69 Query: 74 ELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDF 133 + SY + + +W G+GR P K AM QG++ ++ Sbjct: 70 ---------------------KRVSYFNPTNRSVSWNGRGRCPHWFKVAM-AQGRTPEEL 107 Query: 134 L 134 Sbjct: 108 A 108 >UniRef50_B4S9M9 Putative uncharacterized protein n=1 Tax=Prosthecochloris aestuarii DSM 271 RepID=B4S9M9_PROA2 Length = 87 Score = 41.9 bits (97), Expect = 0.007, Method: Composition-based stats. Identities = 15/86 (17%), Positives = 31/86 (36%), Gaps = 10/86 (11%) Query: 51 VEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWT 110 E+ + + R + + +++ A +++P Y D W Sbjct: 4 QREKVKVIAGIRSKMAEFDLSESDIFG------GAKPASGSKKPKMIRYYDPK-RGIKWA 56 Query: 111 GQGRTPAVIKKAMDEQGKSLDDFLIK 136 G+GR P ++ E+ LD F + Sbjct: 57 GRGRKPPEFEELSQEE---LDRFRLD 79 >UniRef50_A4STY6 Histone-like nucleoid-structuring protein H-NS n=9 Tax=Gammaproteobacteria RepID=A4STY6_AERS4 Length = 154 Score = 40.7 bits (94), Expect = 0.015, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 42/117 (35%), Gaps = 12/117 (10%) Query: 4 ALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYRE 63 + L + R L E++E+LE V +E ++ + R + ++ Sbjct: 34 VISELKRKHRVLILMRGIPLHEFREIIERLEAVYSELESDQKNRDELDKIRRAEAEKIII 93 Query: 64 MLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIK 120 + A G+D L + AK + + W+GQGR P V K Sbjct: 94 DMNARGVDIQYLNEVIVGKSESDNAKYIK------------DGVPWSGQGRRPDVFK 138 >UniRef50_UPI00006CAF87 hypothetical protein TTHERM_00467380 n=1 Tax=Tetrahymena thermophila RepID=UPI00006CAF87 Length = 1116 Score = 40.4 bits (93), Expect = 0.017, Method: Composition-based stats. Identities = 14/96 (14%), Positives = 36/96 (37%), Gaps = 2/96 (2%) Query: 1 MSEALKILNNIRTLRAQA--RECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKL 58 MS+ +KIL+ L +E + L+ + LE + E+++E Sbjct: 629 MSDNIKILHQKEQLHKTLMKKESEITQLQLRVSDLEKKLEEKQDEAKLKRKLELAIQENT 688 Query: 59 QQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQRP 94 ++ ++ + +E + + + +R + Sbjct: 689 KELQQQIEELQKTISEQNFEIQNRTNQERFQRHKVS 724 >UniRef50_A7SF45 Predicted protein n=1 Tax=Nematostella vectensis RepID=A7SF45_NEMVE Length = 536 Score = 40.4 bits (93), Expect = 0.020, Method: Composition-based stats. Identities = 16/94 (17%), Positives = 37/94 (39%), Gaps = 4/94 (4%) Query: 7 ILNNIRTLRAQARECT----LETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYR 62 + +R + AQA+ T + L + + + ++ E+ EE E+E++ + Sbjct: 368 SITKLREVNAQAKSVTEKYWADQLNMVCHEKDNIIAEKEEEIYLKEKELEDKESAIHTLE 427 Query: 63 EMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAK 96 E + + N+ ++ S + AK Sbjct: 428 EEIKENKDYINDFVDGKDEENSEKTPASVKELAK 461 >UniRef50_B1ZZR1 Glycosyl transferase family 2 n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZZR1_OPITP Length = 1275 Score = 40.0 bits (92), Expect = 0.021, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 2/82 (2%) Query: 12 RTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGID 71 R +RA +E T+ L E L E V ER +A AE+ K + + Sbjct: 412 RRMRA--KEQTIAQLRETLAAREATVAERDAAITAQQAEIAALRAKSNADLAAMRQHVAN 469 Query: 72 PNELLNSLAAVKSGTKAKRAQR 93 ++ L A+RA+ Sbjct: 470 LENVIVELRRTLEDAAAQRARA 491 >UniRef50_A6GSS8 Putative uncharacterized protein n=1 Tax=Limnobacter sp. MED105 RepID=A6GSS8_9BURK Length = 106 Score = 40.0 bits (92), Expect = 0.024, Method: Composition-based stats. Identities = 24/107 (22%), Positives = 46/107 (42%), Gaps = 3/107 (2%) Query: 32 KLEVVVNERREEESAAAAEV-EERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAKR 90 + +N+ + +E A A E + + L Q RE++ GI E+ + + Sbjct: 2 DFQSAINQMKAKEEALAKEKDQLKGAALNQIRELVALFGISSAEIFTTPKKPAAAKSTVD 61 Query: 91 AQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIKQ 137 + +T + +G+ P +KKA++E GK+ D LI + Sbjct: 62 YSAFEVGKTYSDGVKTYKFASKGKRPDWLKKAIEE-GKTAKD-LITK 106 >UniRef50_D1IIM0 Whole genome shotgun sequence of line PN40024, scaffold_532.assembly12x (Fragment) n=14 Tax=Embryophyta RepID=D1IIM0_VITVI Length = 225 Score = 40.0 bits (92), Expect = 0.026, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 40/94 (42%), Gaps = 6/94 (6%) Query: 1 MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQ 60 +S+AL+++ +R+ + + ++ E++ EK+ + E+ E E+ +QQ Sbjct: 105 LSDALRMMTQLRSEGQKLK----KSCEDLQEKINELKAEKNELRDEKQRLKTEKENIVQQ 160 Query: 61 YREMLIADGI--DPNELLNSLAAVKSGTKAKRAQ 92 + + G P+ + AA +K Sbjct: 161 IKALSSQAGFLPHPSAIPAPFAAPGQVVGSKLMP 194 >UniRef50_B8KYY1 Virulence regulator n=1 Tax=Stenotrophomonas sp. SKA14 RepID=B8KYY1_9GAMM Length = 128 Score = 39.2 bits (90), Expect = 0.037, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 37/111 (33%), Gaps = 11/111 (9%) Query: 21 CTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDP-----NEL 75 TLE + + + E ++ E E++ A E E L G N+L Sbjct: 3 LTLEQIRKKKAEAEALLAEM--EKAEGDALAAEAGASFAGVYETLQQFGQHYTTKQKNDL 60 Query: 76 LNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQ 126 L K+ + + R K+ D TW G GR P + Sbjct: 61 KALLEPRKAVSASAGISRAPKFQIPD----GTTWAGTGRQPKAFLAWAETA 107 >UniRef50_B2IA25 Histone family protein nucleoid-structuring protein H-NS n=14 Tax=Xylella fastidiosa RepID=B2IA25_XYLF2 Length = 138 Score = 39.2 bits (90), Expect = 0.038, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 16/46 (34%), Gaps = 3/46 (6%) Query: 77 NSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIKKA 122 K+ + R KY +TWTG+GR P+ Sbjct: 73 ERPKTRKALSADARRVVVPKYCLPHSG---ETWTGRGRLPSSFAAW 115 >UniRef50_C6CWK0 MutS2 family protein n=5 Tax=cellular organisms RepID=C6CWK0_PAESJ Length = 789 Score = 39.2 bits (90), Expect = 0.042, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 38/98 (38%), Gaps = 14/98 (14%) Query: 12 RTLRAQARECTLETLEEMLEKLEVVVNERREEE-SAAAAEVEERTRKLQQYREMLIADGI 70 R + AQ + LE E+ + ++ + +EE A A E + + R++ + +G Sbjct: 544 REMEAQRKRHE-AELERFEEQRDKMLQKAQEEAHEAVAKARREADQIIADLRKLALEEGA 602 Query: 71 D------------PNELLNSLAAVKSGTKAKRAQRPAK 96 E LA K + A++PAK Sbjct: 603 SVKEHKLIEAKRRLEEAAPELATKKKRSAGGGAKKPAK 640 >UniRef50_Q12840 Kinesin heavy chain isoform 5A n=81 Tax=Metazoa RepID=KIF5A_HUMAN Length = 1032 Score = 38.0 bits (87), Expect = 0.095, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 31/66 (46%) Query: 19 RECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNS 78 ++ T++ L+++ +KL++ + + + + +E E++ KLQ+ + +L Sbjct: 724 KQKTIDELKDLNQKLQLELEKLQADYEKLKSEEHEKSTKLQELTFLYERHEQSKQDLKGL 783 Query: 79 LAAVKS 84 V Sbjct: 784 EETVAR 789 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.306 0.141 0.388 Lambda K H 0.267 0.0431 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 676,669,406 Number of Sequences: 3077464 Number of extensions: 22308205 Number of successful extensions: 216900 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 301 Number of HSP's successfully gapped in prelim test: 392 Number of HSP's that attempted gapping in prelim test: 214791 Number of HSP's gapped (non-prelim): 1773 length of query: 137 length of database: 1,040,396,356 effective HSP length: 102 effective length of query: 35 effective length of database: 726,495,028 effective search space: 25427325980 effective search space used: 25427325980 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.4 bits) S2: 87 (38.0 bits)