16/01/2012 18:36:42 : INFO  : Run start: Mon Jan 16 18:36:42 GMT 2012
16/01/2012 18:36:43 : INFO  : Initialised job
16/01/2012 18:36:43 : INFO  : Renaming log file 'phyre2_20120116_183642.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/02085f6bdf69d422/phyre_20120116_183642.log'
16/01/2012 18:36:43 : INFO  : Initialised job:
Sequence
>batch____
MKKLFIQFYLLLFVCFLVMSLLVGLVYKFTAERAGKQSLDDLMNSSLYLMRSELREIPPH
DWGKTLKEMDLNLSFDLRVEPLSKYHLDDISMHRLRGGEIVALDDQYTFLQRIPRSHYVL
AVGPVPYLYYLHQMRLLDIALIAFIAISLAFPVFIWMRPHWQDMLKLEAAAQRFGDGHLN
ERIHFDEGSSFERLGVAFNQMADNINALIASKKQLIDGIAHELRTPLVRLRYRLEMSDNL
SAAESQALNRDISQLEALIEELLTYARLDRPQNELHLSEPDLPLWLSTHLADIQAVTPDK
TVRIKTLVQGHYAALDMRLMERVLDNLLNNALRYCHSTVETSLLLSGNRATLIVEDDGPG
IAPENREHIFEPFVRLDPSRDRSTGGCGLGLAIVHSIALAMGGTVNCDTSELGGARFSFS
WPLWHNIPQFTSA

16/01/2012 18:36:43 : INFO  : Checked sequence
16/01/2012 18:36:43 : INFO  : Finding homologues with PSI-BLAST
16/01/2012 18:36:43 : INFO  : PSI-BLAST 3 iterations
16/01/2012 18:39:56 : INFO  : PSI-BLAST 5 iterations
16/01/2012 18:45:48 : INFO  : Finished PSI-BLAST
16/01/2012 18:45:49 : INFO  : Running Buildali to generate a3m file
16/01/2012 21:24:11 : INFO  : Converting to HMM
16/01/2012 21:25:12 : INFO  : Calibrating HMM
16/01/2012 21:25:33 : INFO  : Searching HMM database
16/01/2012 21:35:09 : INFO  : Finished buildali
16/01/2012 21:35:09 : INFO  : Predicting secondary structure
16/01/2012 21:35:09 : INFO  : Predicted secondary structure (PSI-Pred)
16/01/2012 21:35:09 : INFO  : Predicting Disordered regions
16/01/2012 21:35:09 : INFO  : Predicted Disorder (Disopred)
16/01/2012 21:35:09 : INFO  : Running memsat_svm check
16/01/2012 21:38:10 : INFO  : Running memsat_svm full
16/01/2012 21:39:40 : INFO  : Predicted Transmembrane (memsat_svm) ID '02085f6bdf69d422'
16/01/2012 21:39:40 : INFO  : Initialising fold library search
16/01/2012 21:39:40 : INFO  : Initialised search input
16/01/2012 21:39:40 : INFO  : Building Ensemble models
16/01/2012 21:39:40 : INFO  : Building hh.c3d2rB_.model.1.pdb
16/01/2012 21:39:41 : INFO  : Building hh.c2q8fA_.model.2.pdb
16/01/2012 21:39:41 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/02085f6bdf69d422/hh.c2q8fA_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/02085f6bdf69d422/c2q8fA_.2.pdb
16/01/2012 21:39:41 : INFO  : Building hh.c2bu8A_.model.3.pdb
16/01/2012 21:39:42 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/02085f6bdf69d422/hh.c2bu8A_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/02085f6bdf69d422/c2bu8A_.3.pdb
16/01/2012 21:39:42 : INFO  : Building hh.c3d36B_.model.4.pdb
16/01/2012 21:39:42 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/02085f6bdf69d422/hh.c3d36B_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/02085f6bdf69d422/c3d36B_.4.pdb
16/01/2012 21:39:42 : INFO  : Building hh.c2c2aA_.model.5.pdb
16/01/2012 21:39:42 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/02085f6bdf69d422/hh.c2c2aA_.model.5.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/02085f6bdf69d422/c2c2aA_.5.pdb
16/01/2012 21:39:43 : INFO  : Building c3d2rB_.1.pdb
16/01/2012 21:39:43 : INFO  : Building c2q8fA_.2.pdb
16/01/2012 21:39:43 : INFO  : Building c2bu8A_.3.pdb
16/01/2012 21:39:44 : INFO  : Building c3d36B_.4.pdb
16/01/2012 21:39:44 : INFO  : Building c2c2aA_.5.pdb
16/01/2012 21:39:44 : INFO  : Building c1y8oA_.6.pdb
16/01/2012 21:39:45 : INFO  : Building c1gjvA_.7.pdb
16/01/2012 21:39:45 : INFO  : Building d1id0a_.8.pdb
16/01/2012 21:39:45 : INFO  : Building d1bxda_.9.pdb
16/01/2012 21:39:46 : INFO  : Building c3a0rA_.10.pdb
16/01/2012 21:39:46 : INFO  : Building d2c2aa2.11.pdb
16/01/2012 21:39:46 : INFO  : Building d1jm6a2.12.pdb
16/01/2012 21:39:46 : INFO  : Building c3a0tA_.13.pdb
16/01/2012 21:39:47 : INFO  : Building d1gkza2.14.pdb
16/01/2012 21:39:47 : INFO  : Building c1b3qA_.15.pdb
16/01/2012 21:39:47 : INFO  : Building d1ysra1.16.pdb
16/01/2012 21:39:48 : INFO  : Building c2ch4A_.17.pdb
16/01/2012 21:39:48 : INFO  : Building c3jz3B_.18.pdb
16/01/2012 21:39:48 : INFO  : Building d1i58a_.19.pdb
16/01/2012 21:39:49 : INFO  : Building d1r62a_.20.pdb
16/01/2012 21:39:57 : INFO  : Finished HH model building
16/01/2012 21:39:57 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
16/01/2012 21:40:02 : INFO  : html domain output complete ID '02085f6bdf69d422'
16/01/2012 22:28:32 : INFO  : Run end  : Mon Jan 16 22:28:32 GMT 2012
