179 c3civA_ Probab=80.24   E-value=3.8  Score=19.56  Aligned_columns=143  Identities=13%

Q ss_pred             HHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCH-----HHHHHHHHHCE-----EEEEECCCCCCCCC
Q ss_conf             998658899739989998476358888885636223347555899-----99998887152-----99986243137864
Q batch____        69 FNQFYHQWLQSIFSHVHLLPFYPWSSDDGFSVIDYHQVASEAGEW-----QDIQQLGECSH-----LMFDFVCNHMSAKS  138 (559)
Q Consensus        69 ~~~~LdyL~~LGv~~i~L~Pif~s~~d~GYd~~dy~~idp~~Gt~-----edlk~Lv~~~h-----VilD~V~NHts~~~  138 (559)
                      ..+-|+.|+++|+|+|=|...        +...++......+|+.     +.++.+|+.|+     ||+|+...--|.. 
T Consensus        28 ~~~~l~~l~~~G~N~vRi~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~A~~~Gl~Vil~~h~~~~~~~-   98 (316)
T c3civA_          28 ARASMRALAEQPFNWVTLAFA--------GLMEHPGDPAIAYGPPVTVSDDEIASMAELAHALGLKVCLKPTVNCRDGT-   98 (316)
T ss_dssp             HHHHHHHHHHSSCSEEEEEEE--------EEESSTTCCCCBCSTTTBCCHHHHHHHHHHHHHTTCEEEEEEEEEETTCC-
T ss_pred             HHHHHHHHHHCCCCEEEEECC--------CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCC-
T ss_conf             999999999839989998232--------47777677654447677679789999999998689879997235888876-


Q ss_pred             HHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             56888640488778706852888787766345557886874325766735731677766213798999999999999999
Q batch____       139 EWFKNYLQQHPGFEDFFIAVDPQTDLSAVTRPRALPLLTPFQMRDHSTRHLWTTFSDDQIDLNYRSPEVLLAMVDVLLCY  218 (559)
Q Consensus       139 ~wf~~~~~~~~~~~d~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~pdLN~~np~Vr~~i~~~~~~W  218 (559)
                                               +.+...+........+.......                   .++.+.......=
T Consensus        99 -------------------------w~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~a~~~  134 (316)
T c3civA_          99 -------------------------WRGEIRFEKEHGPDLESWEAWFG-------------------SYSDMMAHYAHVA  134 (316)
T ss_dssp             -------------------------CGGGCCCSBSCCTTSSBHHHHHH-------------------HHHHHHHHHHHHH
T ss_pred             -------------------------CCCCCCCCCCCCCCHHHHHHHHH-------------------HHHHHHHHHHHHH
T ss_conf             -------------------------55566767860125576999999-------------------9999998799998


Q ss_pred             HHCCCCEEEECCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf             82699799987845313345766667710799999999999764898699951357
Q batch____       219 LAKGAEYVRLDAVGFMWKEPGTSCIHLEKTHLIIKLLRSIIDNVAPGTVIITETNV  274 (559)
Q Consensus       219 l~~gvDGfRlD~v~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~p~~~~igE~~~  274 (559)
                      .+.|+.-+          ..+....+......+++++-+.++++.|+.+++...+.
T Consensus       135 ~~~~nE~~----------~~gne~~~~~~~~~~~~~~~~~ir~~dp~~~~~~~~~~  180 (316)
T c3civA_         135 KRTGCEMF----------CVGCEMTTAEPHEAMWRETIARVRTEYDGLVTYNCNHG  180 (316)
T ss_dssp             HHTTCSEE----------EEEESCTTTTTCHHHHHHHHHHHHHHCCSEEEEEEETT
T ss_pred             HHCCCCEE----------ECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf             74199858----------50677776001467899999999974699779944688