 |
| Job Description | P15081 | | Confidence | 2.05% | Date | Thu Jan 5 11:34:37 GMT 2012 |
| Rank | 98 | Aligned Residues | 35 |
| % Identity | 6% | Template | d1ku3a_ |
| SCOP info | DNA/RNA-binding 3-helical bundle
| Sigma3 and sigma4 domains of RNA polymerase sigma factors
| Sigma4 domain
|
| Resolution | 1.80 |
|
|   |   |
83 | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . |
| Predicted Secondary structure |   |
|
|
|
|
|
|
|
|  |  |  |
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
| Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence |   |
I | P | A | I | T | G | M | H | A | G | D | L | Q | P | D | V | I | F | P | H | D | P | L | S | Q | N | A | L | S | L | A | L | K | L | K | R |
| Query Conservation |   |
  |   |   |   |   |
|   |   |   |   |
|
|   |   |   |   |   |   |   |   |   |
|   |   |   |   |
|
|   |   |
|   |   |   |
|   |
| Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation |   |
|   |   |   |   |   |   |
|   |   |
|
| . |
|   |   |
|
|
|
|   |   |   |
|
|   |   |   |   |
|
|
|   |
|
|
|
| Template Sequence |   |
L | I | D | G | R | E | H | T | L | E | E | V | . |
G | A | Y | F | G | V | T | R | E | R | I | R | Q | I | E | N | K | A | L | R | K | L | K |
| Template Known Secondary structure |   |
T | T | T | S | S |
|
|
|  |  |  |  | . |  |  |  |  | T |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| Template Predicted Secondary structure |   |
 |
|
|
|
|
|
|
|  |  |  |  | . |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
390 | . | . | . | . | . | . | . | . | . | 400 | . | |
. | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420 | . | . | . | . |
|   |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
|   |
|
|
|