198 d2hoxa1 Probab=99.87   E-value=1e-20  Score=143.60  Aligned_columns=315  Identities=14%

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC--CHHEEEEECCHHHHHHHHHHHHHHCCCCCCCEEECCCCCC----H
Q ss_conf             788775354677999999999999999984719--4002999698899999999975312467551243036751----3
Q batch____        47 AGNVHRSQFAEAQRLTARYEAAREKVAQLLNAP--DDKTIVWTRGTTESINMVAQCYARPRLQPGDEIIVSVAEH----H  120 (401)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~r~~lA~~~g~~--~~~~i~~t~g~t~a~~~~~~~~~~~~~~~~~~v~~~~~~~----~  120 (401)
                      ++.........+......+++...++.+..|..  ++..|+||+|+++++++++.++    .+++|.+++..+.+    .
T Consensus        87 ~~~~~y~~~~~~~~~~~~L~~~i~~l~~~~g~~~~~~~~iv~t~G~~~~l~~a~~aL----~~pGd~v~~~~p~~v~~~~  162 (425)
T d2hoxa1          87 WHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISL----SPNMTATPDAPESKVVAHA  162 (425)
T ss_dssp             TTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHH----SCCTTTCTTSCCEEEEECS
T ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHH----CCCCCCCCCCCCCEEEECC
T ss_conf             554565456643445289999999998850886788776999468899999999986----4888612356774357300


Q ss_pred             HHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             56899987655269468864487876638789986324577300001224566432103677764101222233211100
Q batch____       121 ANLVPWLMVAQQTGAKVVKLPLNAQRLPDVDLLPELITPRSRILALGQMSNVTGGCPDLARAITFAHSAGMVVMVDGAQG  200 (401)
Q Consensus       121 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (401)
                      ..+..........+.+...++      +|.+.++.....++...++.+++||+|...+       +..++.+++.|.++.
T Consensus       163 p~y~~~~~~~~~~~~~~~~~~------~d~~~~~~~~~~~~~~~~i~~P~NPtG~v~~-------a~~~~~~~i~De~y~  229 (425)
T d2hoxa1         163 PFYPVFREQTKYFDKKGYVWA------GNAANYVNVSNPEQYIEMVTSPNNPEGLLRH-------AVIKGCKSIYDMVYY  229 (425)
T ss_dssp             SCCHHHHHHHHHSCCTTEEEE------EEGGGGTTCSCGGGEEEEEESSCTTTCCCCC-------CSSTTCEEEEECTTC
T ss_pred             HHHHHHHHHHHHCCCCCCCCC------CCHHHHHHHCCCCCEEEEECCCCCCCCEEEE-------EEECCCEEEEECCCC
T ss_conf             237789999985599744424------7988999724888579998178888560654-------232396899714323


Q ss_pred             CCCCCCCCCCCCCEEEEEECCCCCCCCC--CEEEEEC-HHHHHHHCHHCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCHH
Q ss_conf             0013366322472079972233667775--0799986-889952012001665555322001110111112567881166
Q batch____       201 AVHFPADVQQLDIDFYAFSGHKLYGPTG--IGVLYGK-SELLEAMSPWLGGGKMVHEVSFDGFTTQSAPWKLEAGTPNVA  277 (401)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~s~~~~~~~~g--~g~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~t~~~~  277 (401)
                      .............++.+.|.+|.++..|  .|++++. +.+.+.+.......................           .
T Consensus       230 ~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~i~~~~~i~~~l~~~~~~~~~~~s~~~Q~aA~~~L-----------~  298 (425)
T d2hoxa1         230 WPHYTPIKYKADEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVL-----------K  298 (425)
T ss_dssp             STTTSCCCSCBCCSEEEEEHHHHTSCGGGCCEEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHH-----------H
T ss_pred             CCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH-----------H
T ss_conf             43323333456854999815510123323101899689899999998641057773689999999996-----------0


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE--------------ECCCCCCEEEEEECCCCHHHHHH
Q ss_conf             7765565899876421799999998634899999861798299--------------04899857999827999999999
Q batch____       278 GVIGLSAALEWLADYDINQAESWSRSLATLAEDALAKRPGFRS--------------FRCQDSSLLAFDFAGVHHSDMVT  343 (401)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~--------------~~~~~~~~~~~~~~~~~~~~l~~  343 (401)
                      ....................++..+++.+.+...+.+..++.+              ..+++++++|++++..+.+.+.+
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~r~~l~~r~~~l~~~L~~~~~~~l~~~p~~~~~~~~~~~~~~~~~f~w~~~~~~~~~~~~~  378 (425)
T d2hoxa1         299 EVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQ  378 (425)
T ss_dssp             HHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSGGGCSHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHH
T ss_conf             20134565555489999999999999999999998635763003456554322100137787616998678980899999


Q ss_pred             HHHHCCCEEEEECCCCCHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             9986891999705767355775089977999768888999999999999999998
Q batch____       344 LLAEYGIALRAGQHCAQPLLAELGVTGTLRASFAPYNTKSDVDALVNAVDRALEL  398 (401)
Q Consensus       344 ~L~~~gi~v~~g~~~~~~~~~~~~~~~~iRis~~~~~t~edid~~i~~l~~~l~~  398 (401)
                      .|.++||.+++|+.|..       .++++|||+..  ++|++|++++.|++++++
T Consensus       379 lL~e~GI~v~pGs~FG~-------~~~~vRiSl~~--~~e~ld~~l~rL~~~v~~  424 (425)
T d2hoxa1         379 TFQNGRINTQNGVGFEA-------SSRYVRLSLIK--TQDDFDQLMYYLKDMVKA  424 (425)
T ss_dssp             HHHHTTEECEEGGGGTS-------CTTEEEEECSS--CHHHHHHHHHHHHHHHTC
T ss_pred             HHHHCCEEEECCCCCCC-------CCCEEEEEECC--CHHHHHHHHHHHHHHHHC
T ss_conf             99966949971702389-------88659999139--989999999999998726