17/01/2012 00:37:09 : INFO  : Run start: Tue Jan 17 00:37:08 GMT 2012
17/01/2012 00:37:12 : INFO  : Initialised job
17/01/2012 00:37:13 : INFO  : Renaming log file 'phyre2_20120117_003708.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/01cda2c272ca1d2e/phyre_20120117_003708.log'
17/01/2012 00:37:14 : INFO  : Initialised job:
Sequence
>batch____
MNVFNPAQFRAQFPALQDAGVYLDSAATALKPEAVVEATQQFYSLSAGNVHRSQFAEAQR
LTARYEAAREKVAQLLNAPDDKTIVWTRGTTESINMVAQCYARPRLQPGDEIIVSVAEHH
ANLVPWLMVAQQTGAKVVKLPLNAQRLPDVDLLPELITPRSRILALGQMSNVTGGCPDLA
RAITFAHSAGMVVMVDGAQGAVHFPADVQQLDIDFYAFSGHKLYGPTGIGVLYGKSELLE
AMSPWLGGGKMVHEVSFDGFTTQSAPWKLEAGTPNVAGVIGLSAALEWLADYDINQAESW
SRSLATLAEDALAKRPGFRSFRCQDSSLLAFDFAGVHHSDMVTLLAEYGIALRAGQHCAQ
PLLAELGVTGTLRASFAPYNTKSDVDALVNAVDRALELLVD

17/01/2012 00:37:14 : INFO  : Checked sequence
17/01/2012 00:37:16 : INFO  : Finding homologues with PSI-BLAST
17/01/2012 00:37:17 : INFO  : PSI-BLAST 3 iterations
17/01/2012 00:40:43 : INFO  : PSI-BLAST 5 iterations
17/01/2012 00:44:12 : INFO  : Finished PSI-BLAST
17/01/2012 00:44:15 : INFO  : Running Buildali to generate a3m file
17/01/2012 01:41:32 : INFO  : Converting to HMM
17/01/2012 01:41:52 : INFO  : Calibrating HMM
17/01/2012 01:42:10 : INFO  : Searching HMM database
17/01/2012 01:52:11 : INFO  : Finished buildali
17/01/2012 01:52:12 : INFO  : Predicting secondary structure
17/01/2012 01:52:18 : INFO  : Predicted secondary structure (PSI-Pred)
17/01/2012 01:52:19 : INFO  : Predicting Disordered regions
17/01/2012 01:52:22 : INFO  : Predicted Disorder (Disopred)
17/01/2012 01:52:24 : INFO  : Running memsat_svm check
17/01/2012 01:59:55 : INFO  : Globular protein
17/01/2012 01:59:56 : INFO  : Predicted Transmembrane (memsat_svm) ID '01cda2c272ca1d2e'
17/01/2012 01:59:57 : INFO  : Initialising fold library search
17/01/2012 01:59:59 : INFO  : Initialised search input
17/01/2012 02:00:01 : INFO  : Building Ensemble models
17/01/2012 02:00:03 : INFO  : Building hh.d1jf9a_.model.1.pdb
17/01/2012 02:00:13 : INFO  : Building hh.d1t3ia_.model.2.pdb
17/01/2012 02:00:20 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/01cda2c272ca1d2e/hh.d1t3ia_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/01cda2c272ca1d2e/d1t3ia_.2.pdb
17/01/2012 02:00:23 : INFO  : Building d1jf9a_.1.pdb
17/01/2012 02:00:32 : INFO  : Building d1t3ia_.2.pdb
17/01/2012 02:00:41 : INFO  : Building c3caiA_.3.pdb
17/01/2012 02:00:52 : INFO  : Building d1qz9a_.4.pdb
17/01/2012 02:01:02 : INFO  : Building c3e9kA_.5.pdb
17/01/2012 02:01:13 : INFO  : Building c2hzpA_.6.pdb
17/01/2012 02:01:22 : INFO  : Building c3lvmB_.7.pdb
17/01/2012 02:01:32 : INFO  : Building d1eg5a_.8.pdb
17/01/2012 02:01:41 : INFO  : Building d1p3wa_.9.pdb
17/01/2012 02:01:52 : INFO  : Building d1elua_.10.pdb
17/01/2012 02:02:01 : INFO  : Building c2hdyA_.11.pdb
17/01/2012 02:02:14 : INFO  : Building d2c0ra1.12.pdb
17/01/2012 02:02:26 : INFO  : Building c3ffrA_.13.pdb
17/01/2012 02:02:35 : INFO  : Building d1w23a_.14.pdb
17/01/2012 02:02:46 : INFO  : Building c3nnkC_.15.pdb
17/01/2012 02:02:56 : INFO  : Building c3m5uA_.16.pdb
17/01/2012 02:03:07 : INFO  : Building d1bjna_.17.pdb
17/01/2012 02:03:18 : INFO  : Building d2ch1a1.18.pdb
17/01/2012 02:03:27 : INFO  : Building c2huuA_.19.pdb
17/01/2012 02:03:37 : INFO  : Building c3e77A_.20.pdb
17/01/2012 02:04:10 : INFO  : Finished HH model building
17/01/2012 02:04:11 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
17/01/2012 02:04:56 : INFO  : html domain output complete ID '01cda2c272ca1d2e'
17/01/2012 05:14:07 : INFO  : Run end  : Tue Jan 17 05:14:06 GMT 2012
