Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	N	V	F	N	P	A	Q	F	R	A	Q	F	P	A	L	Q	D	A	G	V	Y	L	D	S	A	A	T	A	L	K	P	E	A	V	V	E	A	T	Q	Q	F	Y	S	L	S	A	G	N	V	H	R	S	Q	F	A	E	A	Q	R
Secondary structure
SS confidence
Disorder		?	?	?	?	?																																													?	?		?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		L	T	A	R	Y	E	A	A	R	E	K	V	A	Q	L	L	N	A	P	D	D	K	T	I	V	W	T	R	G	T	T	E	S	I	N	M	V	A	Q	C	Y	A	R	P	R	L	Q	P	G	D	E	I	I	V	S	V	A	E	H	H
Secondary structure
SS confidence
Disorder																																												?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		A	N	L	V	P	W	L	M	V	A	Q	Q	T	G	A	K	V	V	K	L	P	L	N	A	Q	R	L	P	D	V	D	L	L	P	E	L	I	T	P	R	S	R	I	L	A	L	G	Q	M	S	N	V	T	G	G	C	P	D	L	A
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		R	A	I	T	F	A	H	S	A	G	M	V	V	M	V	D	G	A	Q	G	A	V	H	F	P	A	D	V	Q	Q	L	D	I	D	F	Y	A	F	S	G	H	K	L	Y	G	P	T	G	I	G	V	L	Y	G	K	S	E	L	L	E
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		A	M	S	P	W	L	G	G	G	K	M	V	H	E	V	S	F	D	G	F	T	T	Q	S	A	P	W	K	L	E	A	G	T	P	N	V	A	G	V	I	G	L	S	A	A	L	E	W	L	A	D	Y	D	I	N	Q	A	E	S	W
Secondary structure
SS confidence
Disorder																		?	?	?		?		?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		S	R	S	L	A	T	L	A	E	D	A	L	A	K	R	P	G	F	R	S	F	R	C	Q	D	S	S	L	L	A	F	D	F	A	G	V	H	H	S	D	M	V	T	L	L	A	E	Y	G	I	A	L	R	A	G	Q	H	C	A	Q
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
Sequence		P	L	L	A	E	L	G	V	T	G	T	L	R	A	S	F	A	P	Y	N	T	K	S	D	V	D	A	L	V	N	A	V	D	R	A	L	E	L	L	V	D
Secondary structure
SS confidence
Disorder																																									?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1jf9 chain A Region: 3 - 399 Aligned: 397 Modelled: 397 Confidence: 100.0% Identity: 43% Fold: PLP-dependent transferase-like Superfamily: PLP-dependent transferases Family: Cystathionine synthase-like Phyre2 PDB 1t3i chain A Region: 7 - 399 Aligned: 391 Modelled: 393 Confidence: 100.0% Identity: 41% Fold: PLP-dependent transferase-like Superfamily: PLP-dependent transferases Family: Cystathionine synthase-like Phyre2 PDB 3cai chain A Region: 4 - 395 Aligned: 377 Modelled: 388 Confidence: 100.0% Identity: 25% PDB header:transferase Chain: A: PDB Molecule:possible aminotransferase; PDBTitle: crystal structure of mycobacterium tuberculosis rv3778c2 protein Phyre2 PDB 1qz9 chain A Region: 1 - 399 Aligned: 379 Modelled: 386 Confidence: 100.0% Identity: 18% Fold: PLP-dependent transferase-like Superfamily: PLP-dependent transferases Family: Cystathionine synthase-like Phyre2 PDB 3e9k chain A Region: 17 - 397 Aligned: 366 Modelled: 381 Confidence: 100.0% Identity: 15% PDB header:hydrolase Chain: A: PDB Molecule:kynureninase; PDBTitle: crystal structure of homo sapiens kynureninase-3-hydroxyhippuric acid2 inhibitor complex Phyre2 PDB 2hzp chain A Region: 1 - 397 Aligned: 381 Modelled: 385 Confidence: 100.0% Identity: 16% PDB header:hydrolase Chain: A: PDB Molecule:kynureninase; PDBTitle: crystal structure of homo sapiens kynureninase Phyre2 PDB 3lvm chain B Region: 12 - 401 Aligned: 370 Modelled: 375 Confidence: 100.0% Identity: 23% PDB header:transferase Chain: B: PDB Molecule:cysteine desulfurase; PDBTitle: crystal structure of e.coli iscs Phyre2 PDB 1eg5 chain A Region: 19 - 399 Aligned: 360 Modelled: 364 Confidence: 100.0% Identity: 25% Fold: PLP-dependent transferase-like Superfamily: PLP-dependent transferases Family: Cystathionine synthase-like Phyre2 PDB 1p3w chain A Region: 21 - 401 Aligned: 362 Modelled: 367 Confidence: 100.0% Identity: 25% Fold: PLP-dependent transferase-like Superfamily: PLP-dependent transferases Family: Cystathionine synthase-like Phyre2 PDB 1elu chain A Region: 12 - 395 Aligned: 367 Modelled: 383 Confidence: 100.0% Identity: 24% Fold: PLP-dependent transferase-like Superfamily: PLP-dependent transferases Family: Cystathionine synthase-like Phyre2 PDB 2hdy chain A Region: 18 - 401 Aligned: 367 Modelled: 370 Confidence: 100.0% Identity: 23% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:selenocysteine lyase; PDBTitle: structure of human selenocysteine lyase Phyre2 PDB 2c0r chain A domain 1 Region: 18 - 398 Aligned: 349 Modelled: 379 Confidence: 100.0% Identity: 19% Fold: PLP-dependent transferase-like Superfamily: PLP-dependent transferases Family: GABA-aminotransferase-like Phyre2 PDB 3ffr chain A Region: 17 - 396 Aligned: 356 Modelled: 375 Confidence: 100.0% Identity: 14% PDB header:transferase Chain: A: PDB Molecule:phosphoserine aminotransferase serc; PDBTitle: crystal structure of a phosphoserine aminotransferase serc (chu_0995)2 from cytophaga hutchinsonii atcc 33406 at 1.75 a resolution Phyre2 PDB 1w23 chain A Region: 19 - 397 Aligned: 347 Modelled: 375 Confidence: 100.0% Identity: 18% Fold: PLP-dependent transferase-like Superfamily: PLP-dependent transferases Family: GABA-aminotransferase-like Phyre2 PDB 3nnk chain C Region: 11 - 401 Aligned: 366 Modelled: 389 Confidence: 100.0% Identity: 16% PDB header:transferase Chain: C: PDB Molecule:ureidoglycine-glyoxylate aminotransferase; PDBTitle: biochemical and structural characterization of a ureidoglycine2 aminotransferase in the klebsiella pneumoniae uric acid catabolic3 pathway Phyre2 PDB 3m5u chain A Region: 19 - 398 Aligned: 347 Modelled: 364 Confidence: 100.0% Identity: 14% PDB header:transferase Chain: A: PDB Molecule:phosphoserine aminotransferase; PDBTitle: crystal structure of phosphoserine aminotransferase from2 campylobacter jejuni Phyre2 PDB 1bjn chain A Region: 20 - 398 Aligned: 349 Modelled: 360 Confidence: 100.0% Identity: 16% Fold: PLP-dependent transferase-like Superfamily: PLP-dependent transferases Family: GABA-aminotransferase-like Phyre2 PDB 2ch1 chain A domain 1 Region: 6 - 399 Aligned: 366 Modelled: 390 Confidence: 100.0% Identity: 14% Fold: PLP-dependent transferase-like Superfamily: PLP-dependent transferases Family: Cystathionine synthase-like Phyre2 PDB 2huu chain A Region: 6 - 400 Aligned: 367 Modelled: 393 Confidence: 100.0% Identity: 16% PDB header:transferase Chain: A: PDB Molecule:alanine glyoxylate aminotransferase; PDBTitle: crystal structure of aedes aegypti alanine glyoxylate2 aminotransferase in complex with alanine Phyre2 PDB 3e77 chain A Region: 28 - 398 Aligned: 341 Modelled: 368 Confidence: 100.0% Identity: 18% PDB header:transferase Chain: A: PDB Molecule:phosphoserine aminotransferase; PDBTitle: human phosphoserine aminotransferase in complex with plp Phyre2 1 d1jf9a_ 2 d1t3ia_ 3 c3caiA_ 4 d1qz9a_ 5 c3e9kA_ 6 c2hzpA_ 7 c3lvmB_ 8 d1eg5a_ 9 d1p3wa_ 10 d1elua_ 11 c2hdyA_ 12 d2c0ra1 13 c3ffrA_ 14 d1w23a_ 15 c3nnkC_ 16 c3m5uA_ 17 d1bjna_ 18 d2ch1a1 19 c2huuA_ 20 c3e77A_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1jf9a_ 100.0 43 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like 2 d1t3ia_ 100.0 41 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like 3 c3caiA_ 100.0 25 PDB header:transferase Chain: A: PDB Molecule:possible aminotransferase; PDBTitle: crystal structure of mycobacterium tuberculosis rv3778c2 protein 4 d1qz9a_ 100.0 18 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like 5 c3e9kA_ 100.0 15 PDB header:hydrolase Chain: A: PDB Molecule:kynureninase; PDBTitle: crystal structure of homo sapiens kynureninase-3-hydroxyhippuric acid2 inhibitor complex 6 c2hzpA_ 100.0 16 PDB header:hydrolase Chain: A: PDB Molecule:kynureninase; PDBTitle: crystal structure of homo sapiens kynureninase 7 c3lvmB_ 100.0 23 PDB header:transferase Chain: B: PDB Molecule:cysteine desulfurase; PDBTitle: crystal structure of e.coli iscs 8 d1eg5a_ 100.0 25 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like 9 d1p3wa_ 100.0 25 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like 10 d1elua_ 100.0 24 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like 11 c2hdyA_ 100.0 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:selenocysteine lyase; PDBTitle: structure of human selenocysteine lyase 12 d2c0ra1 100.0 19 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 13 c3ffrA_ 100.0 14 PDB header:transferase Chain: A: PDB Molecule:phosphoserine aminotransferase serc; PDBTitle: crystal structure of a phosphoserine aminotransferase serc (chu_0995)2 from cytophaga hutchinsonii atcc 33406 at 1.75 a resolution 14 d1w23a_ 100.0 18 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 15 c3nnkC_ 100.0 16 PDB header:transferase Chain: C: PDB Molecule:ureidoglycine-glyoxylate aminotransferase; PDBTitle: biochemical and structural characterization of a ureidoglycine2 aminotransferase in the klebsiella pneumoniae uric acid catabolic3 pathway 16 c3m5uA_ 100.0 14 PDB header:transferase Chain: A: PDB Molecule:phosphoserine aminotransferase; PDBTitle: crystal structure of phosphoserine aminotransferase from2 campylobacter jejuni 17 d1bjna_ 100.0 16 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 18 d2ch1a1 100.0 14 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like 19 c2huuA_ 100.0 16 PDB header:transferase Chain: A: PDB Molecule:alanine glyoxylate aminotransferase; PDBTitle: crystal structure of aedes aegypti alanine glyoxylate2 aminotransferase in complex with alanine 20 c3e77A_ 100.0 18 PDB header:transferase Chain: A: PDB Molecule:phosphoserine aminotransferase; PDBTitle: human phosphoserine aminotransferase in complex with plp 21 c3f0hA_ not modelled 100.0 15 PDB header:transferase Chain: A: PDB Molecule:aminotransferase; PDBTitle: crystal structure of aminotransferase (rer070207000802) from2 eubacterium rectale at 1.70 a resolution 22 d1h0ca_ not modelled 100.0 15 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like 23 c3islA_ not modelled 100.0 13 PDB header:transferase Chain: A: PDB Molecule:purine catabolism protein pucg; PDBTitle: crystal structure of ureidoglycine-glyoxylate aminotransferase (pucg)2 from bacillus subtilis 24 d1vjoa_ not modelled 100.0 16 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like 25 c2z9wA_ not modelled 100.0 14 PDB header:transferase Chain: A: PDB Molecule:aspartate aminotransferase; PDBTitle: crystal structure of pyridoxamine-pyruvate aminotransferase complexed2 with pyridoxal 26 c2fyfB_ not modelled 100.0 16 PDB header:transferase Chain: B: PDB Molecule:phosphoserine aminotransferase; PDBTitle: structure of a putative phosphoserine aminotransferase from2 mycobacterium tuberculosis 27 c2dr1A_ not modelled 100.0 13 PDB header:transferase Chain: A: PDB Molecule:386aa long hypothetical serine aminotransferase; PDBTitle: crystal structure of the ph1308 protein from pyrococcus horikoshii ot3 28 c3qm2A_ not modelled 100.0 17 PDB header:transferase Chain: A: PDB Molecule:phosphoserine aminotransferase; PDBTitle: 2.25 angstrom crystal structure of phosphoserine aminotransferase2 (serc) from salmonella enterica subsp. enterica serovar typhimurium 29 c3mafB_ not modelled 100.0 19 PDB header:lyase Chain: B: PDB Molecule:sphingosine-1-phosphate lyase; PDBTitle: crystal structure of stspl (asymmetric form) 30 d2bkwa1 not modelled 100.0 13 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like 31 d1m32a_ not modelled 100.0 18 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like 32 c3eucB_ not modelled 100.0 19 PDB header:transferase Chain: B: PDB Molecule:histidinol-phosphate aminotransferase 2; PDBTitle: crystal structure of histidinol-phosphate aminotransferase2 (yp_297314.1) from ralstonia eutropha jmp134 at 2.05 a resolution 33 c3hbxB_ not modelled 100.0 16 PDB header:lyase Chain: B: PDB Molecule:glutamate decarboxylase 1; PDBTitle: crystal structure of gad1 from arabidopsis thaliana 34 d1iuga_ not modelled 100.0 15 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like 35 c3mc6C_ not modelled 100.0 17 PDB header:lyase Chain: C: PDB Molecule:sphingosine-1-phosphate lyase; PDBTitle: crystal structure of scdpl1 36 c2yrrA_ not modelled 100.0 17 PDB header:transferase Chain: A: PDB Molecule:aminotransferase, class v; PDBTitle: hypothetical alanine aminotransferase (tth0173) from thermus2 thermophilus hb8 37 c3f9tB_ not modelled 100.0 15 PDB header:lyase Chain: B: PDB Molecule:l-tyrosine decarboxylase mfna; PDBTitle: crystal structure of l-tyrosine decarboxylase mfna (ec 4.1.1.25)2 (np_247014.1) from methanococcus jannaschii at 2.11 a resolution 38 c2w8wA_ not modelled 100.0 15 PDB header:transferase Chain: A: PDB Molecule:serine palmitoyltransferase; PDBTitle: n100y spt with plp-ser 39 c3cbfA_ not modelled 100.0 16 PDB header:transferase Chain: A: PDB Molecule:alpha-aminodipate aminotransferase; PDBTitle: crystal structure of lysn, alpha-aminoadipate2 aminotransferase, from thermus thermophilus hb27 40 d1js3a_ not modelled 100.0 14 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Pyridoxal-dependent decarboxylase 41 c3ffhA_ not modelled 100.0 18 PDB header:transferase Chain: A: PDB Molecule:histidinol-phosphate aminotransferase; PDBTitle: the crystal structure of histidinol-phosphate aminotransferase from2 listeria innocua clip11262. 42 c3ly1C_ not modelled 100.0 15 PDB header:transferase Chain: C: PDB Molecule:putative histidinol-phosphate aminotransferase; PDBTitle: crystal structure of putative histidinol-phosphate aminotransferase2 (yp_050345.1) from erwinia carotovora atroseptica scri1043 at 1.80 a3 resolution 43 c3getA_ not modelled 100.0 17 PDB header:transferase Chain: A: PDB Molecule:histidinol-phosphate aminotransferase; PDBTitle: crystal structure of putative histidinol-phosphate aminotransferase2 (np_281508.1) from campylobacter jejuni at 2.01 a resolution 44 c3hdoB_ not modelled 100.0 14 PDB header:transferase Chain: B: PDB Molecule:histidinol-phosphate aminotransferase; PDBTitle: crystal structure of a histidinol-phosphate aminotransferase from2 geobacter metallireducens 45 c3ftbA_ not modelled 100.0 14 PDB header:transferase Chain: A: PDB Molecule:histidinol-phosphate aminotransferase; PDBTitle: the crystal structure of the histidinol-phosphate2 aminotransferase from clostridium acetobutylicum 46 d1x0ma1 not modelled 100.0 14 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 47 d1wyua1 not modelled 100.0 16 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Glycine dehydrogenase subunits (GDC-P) 48 c3a2bA_ not modelled 100.0 15 PDB header:transferase Chain: A: PDB Molecule:serine palmitoyltransferase; PDBTitle: crystal structure of serine palmitoyltransferase from sphingobacterium2 multivorum with substrate l-serine 49 c3tqxA_ not modelled 100.0 14 PDB header:transferase Chain: A: PDB Molecule:2-amino-3-ketobutyrate coenzyme a ligase; PDBTitle: structure of the 2-amino-3-ketobutyrate coenzyme a ligase (kbl) from2 coxiella burnetii 50 c2ogeC_ not modelled 100.0 16 PDB header:transferase Chain: C: PDB Molecule:transaminase; PDBTitle: x-ray structure of s. venezuelae desv in its internal2 aldimine form 51 c3jtxB_ not modelled 100.0 13 PDB header:transferase Chain: B: PDB Molecule:aminotransferase; PDBTitle: crystal structure of aminotransferase (np_283882.1) from neisseria2 meningitidis z2491 at 1.91 a resolution 52 d1bs0a_ not modelled 100.0 15 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 53 d1lc5a_ not modelled 100.0 18 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 54 d1pmma_ not modelled 100.0 17 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Pyridoxal-dependent decarboxylase 55 d2bwna1 not modelled 100.0 14 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 56 c2jisA_ not modelled 100.0 16 PDB header:lyase Chain: A: PDB Molecule:cysteine sulfinic acid decarboxylase; PDBTitle: human cysteine sulfinic acid decarboxylase (csad) in2 complex with plp. 57 d1kl1a_ not modelled 100.0 19 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 58 d1bw0a_ not modelled 100.0 15 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 59 c3p1tB_ not modelled 100.0 18 PDB header:transferase Chain: B: PDB Molecule:putative histidinol-phosphate aminotransferase; PDBTitle: crystal structure of a putative aminotransferase (bpsl1724) from2 burkholderia pseudomallei k96243 at 2.60 a resolution 60 c3ke3A_ not modelled 100.0 12 PDB header:transferase Chain: A: PDB Molecule:putative serine-pyruvate aminotransferase; PDBTitle: crystal structure of putative serine-pyruvate aminotransferase2 (yp_263484.1) from psychrobacter arcticum 273-4 at 2.20 a resolution 61 c3bcxA_ not modelled 100.0 15 PDB header:transferase Chain: A: PDB Molecule:cdp-6-deoxy-l-threo-d-glycero-4-hexulose-3- PDBTitle: e1 dehydrase 62 d1wyub1 not modelled 100.0 16 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Glycine dehydrogenase subunits (GDC-P) 63 c2okkA_ not modelled 100.0 14 PDB header:lyase Chain: A: PDB Molecule:glutamate decarboxylase 2; PDBTitle: the x-ray crystal structure of the 65kda isoform of glutamic acid2 decarboxylase (gad65) 64 c3cq6E_ not modelled 100.0 15 PDB header:transferase Chain: E: PDB Molecule:histidinol-phosphate aminotransferase; PDBTitle: histidinol-phosphate aminotransferase from corynebacterium2 glutamicum holo-form (plp covalently bound ) 65 c3eleB_ not modelled 100.0 12 PDB header:transferase Chain: B: PDB Molecule:amino transferase; PDBTitle: crystal structure of amino transferase (rer070207001803) from2 eubacterium rectale at 2.10 a resolution 66 d1wsta1 not modelled 100.0 14 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 67 d1fg7a_ not modelled 100.0 15 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 68 c3uwcA_ not modelled 100.0 15 PDB header:transferase Chain: A: PDB Molecule:nucleotide-sugar aminotransferase; PDBTitle: structure of an aminotransferase (degt-dnrj-eryc1-strs family) from2 coxiella burnetii in complex with pmp 69 c3kaxB_ not modelled 100.0 13 PDB header:lyase Chain: B: PDB Molecule:aminotransferase, classes i and ii; PDBTitle: crystal structure of a putative c-s lyase from bacillus anthracis 70 c3k40B_ not modelled 100.0 14 PDB header:lyase Chain: B: PDB Molecule:aromatic-l-amino-acid decarboxylase; PDBTitle: crystal structure of drosophila 3,4-dihydroxyphenylalanine2 decarboxylase 71 d2r5ea1 not modelled 100.0 13 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 72 d1v72a1 not modelled 100.0 17 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 73 d1j32a_ not modelled 100.0 18 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 74 d1fc4a_ not modelled 100.0 13 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 75 c3fkdC_ not modelled 100.0 15 PDB header:lyase Chain: C: PDB Molecule:l-threonine-o-3-phosphate decarboxylase; PDBTitle: the crystal structure of l-threonine-o-3-phosphate2 decarboxylase from porphyromonas gingivalis 76 c2c7tA_ not modelled 100.0 15 PDB header:transferase Chain: A: PDB Molecule:glutamine-2-deoxy-scyllo-inosose PDBTitle: crystal structure of the plp-bound form of btrr,2 a dual functional aminotransferase involved in butirosin3 biosynthesis. 77 c3l8aB_ not modelled 100.0 14 PDB header:lyase Chain: B: PDB Molecule:putative aminotransferase, probable beta-cystathionase; PDBTitle: crystal structure of metc from streptococcus mutans 78 d1b9ha_ not modelled 100.0 15 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 79 d1o4sa_ not modelled 100.0 17 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 80 c3h14A_ not modelled 100.0 17 PDB header:transferase Chain: A: PDB Molecule:aminotransferase, classes i and ii; PDBTitle: crystal structure of a putative aminotransferase from silicibacter2 pomeroyi 81 c1d2fB_ not modelled 100.0 14 PDB header:transferase Chain: B: PDB Molecule:maly protein; PDBTitle: x-ray structure of maly from escherichia coli: a pyridoxal-5'-2 phosphate-dependent enzyme acting as a modulator in mal gene3 expression 82 c3eibB_ not modelled 100.0 13 PDB header:transferase Chain: B: PDB Molecule:ll-diaminopimelate aminotransferase; PDBTitle: crystal structure of k270n variant of ll-diaminopimelate2 aminotransferase from arabidopsis thaliana 83 d1c7na_ not modelled 100.0 15 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like 84 d1dfoa_ not modelled 100.0 17 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 85 d1v2da_ not modelled 100.0 18 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 86 c3dydB_ not modelled 100.0 17 PDB header:transferase Chain: B: PDB Molecule:tyrosine aminotransferase; PDBTitle: human tyrosine aminotransferase 87 c3hqtB_ not modelled 100.0 13 PDB header:transferase Chain: B: PDB Molecule:cai-1 autoinducer synthase; PDBTitle: plp-dependent acyl-coa transferase cqsa 88 d1mdoa_ not modelled 100.0 14 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 89 c3op7A_ not modelled 100.0 18 PDB header:transferase Chain: A: PDB Molecule:aminotransferase class i and ii; PDBTitle: crystal structure of a plp-dependent aminotransferase (zp_03625122.1)2 from streptococcus suis 89-1591 at 1.70 a resolution 90 c2r0tA_ not modelled 100.0 15 PDB header:transferase Chain: A: PDB Molecule:pyridoxamine 5-phosphate-dependent dehydrase; PDBTitle: crystal sructure of gdp-4-keto-6-deoxymannose-3-dehydratase2 with a trapped plp-glutamate geminal diamine 91 c3b46B_ not modelled 100.0 15 PDB header:transferase Chain: B: PDB Molecule:aminotransferase bna3; PDBTitle: crystal structure of bna3p, a putative kynurenine2 aminotransferase from saccharomyces cerevisiae 92 c2po3B_ not modelled 100.0 16 PDB header:transferase Chain: B: PDB Molecule:4-dehydrase; PDBTitle: crystal structure analysis of desi in the presence of its2 tdp-sugar product 93 c3dr4B_ not modelled 100.0 15 PDB header:transferase Chain: B: PDB Molecule:putative perosamine synthetase; PDBTitle: gdp-perosamine synthase k186a mutant from caulobacter2 crescentus with bound sugar ligand 94 c3dzzB_ not modelled 100.0 17 PDB header:transferase Chain: B: PDB Molecule:putative pyridoxal 5'-phosphate-dependent c-s lyase; PDBTitle: crystal structure of a putative plp-dependent aminotransferase2 (lbul_1103) from lactobacillus delbrueckii subsp. at 1.61 a3 resolution 95 d1vp4a_ not modelled 100.0 11 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 96 c3qguB_ not modelled 100.0 15 PDB header:transferase Chain: B: PDB Molecule:ll-diaminopimelate aminotransferase; PDBTitle: l,l-diaminopimelate aminotransferase from chalmydomonas reinhardtii 97 c2dkjB_ not modelled 100.0 18 PDB header:transferase Chain: B: PDB Molecule:serine hydroxymethyltransferase; PDBTitle: crystal structure of t.th.hb8 serine hydroxymethyltransferase 98 c3ju7B_ not modelled 100.0 9 PDB header:transferase Chain: B: PDB Molecule:putative plp-dependent aminotransferase; PDBTitle: crystal structure of putative plp-dependent aminotransferase2 (np_978343.1) from bacillus cereus atcc 10987 at 2.19 a resolution 99 c3pdxA_ not modelled 100.0 16 PDB header:transferase Chain: A: PDB Molecule:tyrosine aminotransferase; PDBTitle: crystal structural of mouse tyrosine aminotransferase 100 c3pplB_ not modelled 100.0 12 PDB header:transferase Chain: B: PDB Molecule:aspartate aminotransferase; PDBTitle: crystal structure of an aspartate transaminase (ncgl0237, cgl0240)2 from corynebacterium glutamicum atcc 13032 kitasato at 1.25 a3 resolution 101 d1w7la_ not modelled 100.0 15 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 102 c2o1bA_ not modelled 100.0 18 PDB header:transferase Chain: A: PDB Molecule:aminotransferase, class i; PDBTitle: structure of aminotransferase from staphylococcus aureus 103 c2qmaB_ not modelled 99.9 16 PDB header:transferase Chain: B: PDB Molecule:diaminobutyrate-pyruvate transaminase and l-2,4- PDBTitle: crystal structure of glutamate decarboxylase domain of2 diaminobutyrate-pyruvate transaminase and l-2,4-diaminobutyrate3 decarboxylase from vibrio parahaemolyticus 104 c3g0tA_ not modelled 99.9 14 PDB header:transferase Chain: A: PDB Molecule:putative aminotransferase; PDBTitle: crystal structure of putative aspartate aminotransferase (np_905498.1)2 from porphyromonas gingivalis w83 at 1.75 a resolution 105 c3ihjA_ not modelled 99.9 14 PDB header:transferase Chain: A: PDB Molecule:alanine aminotransferase 2; PDBTitle: human alanine aminotransferase 2 in complex with plp 106 c2douA_ not modelled 99.9 16 PDB header:transferase Chain: A: PDB Molecule:probable n-succinyldiaminopimelate aminotransferase; PDBTitle: probable n-succinyldiaminopimelate aminotransferase (ttha0342) from2 thermus thermophilus hb8 107 d1svva_ not modelled 99.9 16 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 108 d1o69a_ not modelled 99.9 14 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 109 d1gdea_ not modelled 99.9 17 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 110 d1xi9a_ not modelled 99.9 15 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 111 d1b5pa_ not modelled 99.9 20 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 112 d1d2fa_ not modelled 99.9 14 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like 113 d2gb3a1 not modelled 99.9 17 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 114 c3e2yB_ not modelled 99.9 14 PDB header:transferase, lyase Chain: B: PDB Molecule:kynurenine-oxoglutarate transaminase 3; PDBTitle: crystal structure of mouse kynurenine aminotransferase iii in complex2 with glutamine 115 c3frkB_ not modelled 99.9 13 PDB header:transferase Chain: B: PDB Molecule:qdtb; PDBTitle: x-ray structure of qdtb from t. thermosaccharolyticum in2 complex with a plp:tdp-3-aminoquinovose aldimine 116 d2fnua1 not modelled 99.9 14 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 117 c3if2B_ not modelled 99.9 13 PDB header:transferase Chain: B: PDB Molecule:aminotransferase; PDBTitle: crystal structure of putative amino-acid aminotransferase2 (yp_265399.1) from psychrobacter arcticum 273-4 at 2.50 a resolution 118 c3fdbA_ not modelled 99.9 14 PDB header:transferase Chain: A: PDB Molecule:putative plp-dependent beta-cystathionase; PDBTitle: crystal structure of a putative plp-dependent beta-cystathionase2 (aecd, dip1736) from corynebacterium diphtheriae at 1.99 a resolution 119 c3nysA_ not modelled 99.9 15 PDB header:transferase Chain: A: PDB Molecule:aminotransferase wbpe; PDBTitle: x-ray structure of the k185a mutant of wbpe (wlbe) from pseudomonas2 aeruginosa in complex with plp at 1.45 angstrom resolution 120 c1ynuA_ not modelled 99.9 13 PDB header:lyase Chain: A: PDB Molecule:1-aminocyclopropane-1-carboxylate synthase; PDBTitle: crystal structure of apple acc synthase in complex with l-vinylglycine

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0