HHsearch 1.5 NAME batch____ FAM FILE query COM //bmm/www/servers/phyre2/HH/hhmake -i /bmm/www/servers/phyre2/public_html/phyre2_output/01c5f361484d422c/query.a3m -o /bmm/www/servers/phyre2/public_html/phyre2_output/01c5f361484d422c/query.hhm DATE Sat Jan 14 20:42:08 2012 LENG 116 match states, 116 columns in multiple alignment FILT 103 out of 150 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 5.1 EVD 0.3928 -2.5149 SEQ >ss_pred CCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH HHHHHHHHHHHHHHCC >ss_conf 9863348822006677999999999985269999999999999648999999999999999999999999999981898877323579448999999999 9999999999997339 >Consensus xxxxxxxxxxxxxxeelexxxfxIIxxaGxArsxxxeAlxxakxgdfexAxxxlxeAxxxlxxAHxxqtxliqxeaxgxxxxxslLlvHAQDhLMtaxxx xxlaxelIxlykklxa >batch____ MMDLDNIPDTQTEAEELEEVVMGLIINSGQARSLAYAALKQAKQGDFAAAKAMMDQSRMALNEAHLVQTKLIEGDAGEGKMKVSLVLVHAQDHLMTSMLA RELITELIELHEKLKA >UniRef50_A8S5P0(6-101:101) Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S5P0_9CLOT E=4e-06 s/c=0.55 id=28% cov=82% -------------------IVCTIVANAGESRSASLAAIEAAGDDDFEAAERLMQESEKAYLLAHEAHMEILKRAAGDDPVPMNFLIVHAATHLSNAEVT KDLARQMISILKK--- >UniRef50_C2CHS9(3-107:113) PTS family cellobiose porter component IIA n=2 Tax=Anaerococcus RepID=C2CHS9_9FIRM E=1e-14 s/c=0.77 id=25% cov=91% ----------EMENSTLENVCMQLITYAGIAKSYYIEAMAERRLGNKNSANKLIKEGQTAYNECHKIHHKMFGEQYEIEDSLQNVLLMHAEDQMMACETI YILASELMKCYERIE- >UniRef50_C2BXN8(11-114:119) PTS family lactose-N,N'-diacetylchitobiose-beta-glucoside (Lac) porter component IIA n=4 Tax=Bacilli RepID=C2BXN8_LISGR E=1e-22 s/c=1.03 id=29% cov=91% ------------ENDRLNQLSMNILVHAGNARDCLVQSLESLEESKFEKAKEEIKEARKEVVVAHGLQTDTLQLEASGQQIRYSTLFCHAQDTLMTAQSE ILIGEHLIKLFTKLDA >UniRef50_C9A094(1-102:119) PTS system protein n=2 Tax=Enterococcus RepID=C9A094_ENTGA E=2e-19 s/c=0.95 id=27% cov=88% --------------EEKEQICFQIISEAGMARSCFFESIQQMRKEQTKEALSAIESGKSHYHKAHIAHRQLVQQEAQGDKVWMSLLLSHAEDLLMSADIM SELAKEFNLLYEEVN- >UniRef50_C9XM92(4-103:109) PTS system, IIa component n=4 Tax=Clostridium difficile RepID=C9XM92_CLODC E=6e-17 s/c=0.89 id=27% cov=84% ---------------EMEEKVFSIISEAGDAKSDVMMSLKEIKKGDYNKAKHLLNSASEKIQTASKHHLELLSNAMNSEDSGTDFLVVHSEDHYSNALFA HSLVSELVDIFE---- >UniRef50_B9Y9G0(4-115:126) Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y9G0_9FIRM E=1e-18 s/c=0.84 id=29% cov=93% ---------NQRDQKEMLNCSLEIIMHAGNARELCMAAVKKAMSNEMDEANAKLQEARVEFTEAHQSQTKLLTENAQAVSAEkvgiiPDILMVHAQDHFN AAYIDIDFSGLIIGLYQEVNA >UniRef50_D2EH58(1-105:111) Predicted protein n=1 Tax=Pediococcus acidilactici 7_4 RepID=D2EH58_PEDAC E=5e-16 s/c=0.81 id=29% cov=88% --------------EGLEEICFEIISHSGQAKGLLMEAVtdSRAEHPDYSAIETMLKDARDELKVAQKAHLKVLSDFAqSGQGDAVNPLYIHAEDQMMSA EIFLDLLSELITTNKELQ- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * * 0 * * * * * * * * * 1 0 * * * * * * 1929 0 0 M 2 * * * * * * * * * * 574 * * * * * 1608 * * * 2 0 * * * * * * 1929 0 0 D 3 * * 415 * * * * * * * * * * * * * 2000 * * * 3 0 * * * * * * 2231 0 0 L 4 * * * * * * * * * 1002 * * * * * * 1996 * * 2000 4 0 * * * * * * 2231 0 0 D 5 * * 2009 * * * * * * * * 996 * * * 2000 * * * * 5 0 * * * * * * 2231 0 0 N 6 * * * * * * * * * * * 416 * * * * * * * 1996 6 415 2000 * 1585 585 * * 2231 1000 0 I 7 * * * * * * * 1002 * 2000 * 1996 * * * * * * * * 7 0 * * * * * * 2231 0 0 P 8 * * * 998 * * * * * * * * 1002 * * * * * * * 8 416 * 1996 * * * * 2231 0 0 D 9 * * 1977 1950 * * * * * * * * 2052 * 2023 * * * * * 9 0 * * * * * 0 2234 0 1000 T 10 * * * * * * * * * * * 1471 * * 2604 * 1074 * * * 10 0 * * * * * 0 2838 0 1000 Q 11 * * * 1382 * * * * * * * * * 1008 3071 * * * * * 11 0 * * * * * 0 3387 0 1000 T 12 * * * * * * * * * 3268 2015 * * * 2972 * 1674 2265 * * 12 0 * * * * * 0 3520 0 1000 E 13 * * 1022 1753 * * * 4104 4286 * * * * * * 4313 * 4290 * * 13 89 4069 * 0 * 0 * 4121 1000 1000 A 14 4982 * 4643 3637 * * * * 4910 * 3660 2808 * 4247 4272 1294 3637 * * * 14 0 * * * * * * 4441 0 0 E 15 * * 2350 725 * * * 5944 5485 5735 * 4978 5753 4287 * 5236 6232 * * * 15 0 * * * * * * 5100 0 0 E 16 * * 2413 1395 * 3604 * * 3206 * * 3460 * 4067 6199 6080 4001 * * * 16 0 * * * * * * 5215 0 0 L 17 6847 * * * 5183 * * 2073 6045 1465 2347 * * 6861 * * 4015 4461 * 4786 17 39 5240 * 615 1528 * * 5209 1582 0 E 18 * * 4991 980 * 6590 * 6697 6809 4232 6369 3139 * 3186 * 4499 4279 4751 * 6477 18 31 6337 6768 1585 585 * * 5281 1000 0 E 19 6898 * 5435 1673 * 5118 * 5156 5737 2538 3951 4064 * 2669 6494 4833 4260 5811 * 6764 19 0 * * * * * 0 5310 0 1000 V 20 2541 4478 4669 5802 * * * 1914 4325 3351 5455 6934 * 5854 * * 3729 2476 * 6729 20 0 * * * * 0 * 5331 0 1000 V 21 1890 3137 * * 6537 4206 * 2677 * 4094 6239 * * * * 2199 7167 3340 * * 21 0 * * * * * * 5360 0 0 M 22 * 5361 * * 1145 * * 5968 * 4030 1245 * * * * 6640 * 6109 * * 22 0 * * * * * * 5442 0 0 G 23 4593 * 5612 2324 * 3710 * * 4119 * 3904 3663 5817 2041 5100 3465 3676 * * * 23 0 * * * * * * 5442 0 0 L 24 * * * * * 5833 * 901 * 1985 2895 * * * * * * 4066 * * 24 0 * * * * * * 5455 0 0 I 25 * * * * * * * 361 * 3906 6266 * * * * * * 2820 * * 25 0 * * * * * * 5455 0 0 I 26 1889 6515 * * 6274 4241 * 4499 * 2498 4046 7089 * * * 2227 3971 3524 * * 26 0 * * * * * * 5455 0 0 N 27 4685 * 5080 4889 5115 6798 2393 5833 3461 5327 * 2683 * 5149 6485 3305 6498 * 6316 2208 27 0 * * * * * * 5455 0 0 S 28 870 * * * * 4982 * 5449 * 6633 * * * * * 1946 6440 3092 * * 28 0 * * * * * * 5455 0 0 G 29 * * * * * 42 * * * * * * * * * 5113 * * * * 29 0 * * * * * * 5455 0 0 Q 30 5882 6717 1860 2374 * 6720 5921 5354 5113 6655 4335 2668 * 5544 * 3612 3241 * * * 30 0 * * * * * * 5455 0 0 A 31 366 5145 * * * 3911 * * * * * * * * * 3422 5572 6051 * * 31 0 * * * * * * 5455 0 0 R 32 * * * 6266 5241 * * * 1229 * * 5820 * * 1062 6870 5113 * * * 32 0 * * * * * * 5455 0 0 S 33 4486 * 5507 5415 * 3394 * * 5033 5993 * 4616 * 5621 * 833 3083 6663 * 5784 33 0 * * * * * * 5468 0 0 L 34 3910 3392 4565 4392 5477 6868 4941 5433 3407 2294 3879 4938 * 5452 * 2696 6535 * * 3740 34 0 * * * * * * 5468 0 0 A 35 2003 3739 * * 3400 5245 * 3245 * 2800 6742 * * * * 4378 5667 3574 * 2791 35 0 * * * * * * 5468 0 0 Y 36 4116 * 5747 6299 3128 * 5291 2790 5129 2809 2269 6527 * 6535 5845 4832 6292 4407 * 3136 36 0 * * * * * * 5468 0 0 A 37 3417 * 4851 889 * 5570 6493 6490 4415 * 4878 5727 * 2731 6299 * 5306 * * * 37 17 6458 * 0 * * * 5468 1000 0 A 38 202 * * * * 4940 * 5974 * * * * * * * 3816 * 6458 * * 38 0 * * * * * * 5468 0 0 L 39 6617 * * * 4763 * * 1870 * 1028 3202 * * * * * * 3635 * * 39 20 6171 * 1000 1000 * * 5468 1000 0 K 40 3628 * 2519 3098 * 5155 7026 6814 2474 6612 * 3462 * 2445 3641 5517 7049 * * 6806 40 0 * * * * * * 5468 0 0 Q 41 1795 5701 5612 2828 5382 * 5216 * 4273 2579 * 5940 * 3488 6171 4002 6517 6635 * 4090 41 0 * * * * * * 5468 0 0 A 42 723 6804 * 6747 6344 5857 * 4200 * 3840 3631 * * * 5889 7140 * 3774 * 4501 42 0 * * * * * * 5468 0 0 K 43 3979 * * 2709 * 5002 6685 * 1551 4858 5467 5838 * 4043 2128 5267 * 6452 * * 43 0 * * * * * * 5468 0 0 Q 44 2422 * 4342 2073 * 6814 6171 6871 2837 5225 * 3323 * 3155 4369 6312 4176 * * * 44 0 * * * * * * 5468 0 0 G 45 * * 4347 4046 5710 975 5688 * 4760 5398 * 4285 6171 4107 4997 3615 * * * 4438 45 38 5974 6622 0 * * * 5468 1000 0 D 46 5585 6991 1319 3366 * * 6270 * 3303 * * 2181 * 3623 4965 5295 * * * * 46 0 * * * * * 0 5461 0 1000 F 47 5226 6863 * * 1048 * 6044 3875 4070 4550 5244 * * 6621 5199 7167 5462 6800 5503 2548 47 0 * * * * 0 * 5461 0 1000 A 48 2787 * 3369 1229 * 6663 7112 6490 3949 * * 4655 * 3993 * 3526 4710 6458 * * 48 0 * * * * * * 5468 0 0 A 49 2541 * 4749 1587 * 5780 6515 * 2469 5014 * 5785 * 3519 5118 4486 4966 7208 * * 49 0 * * * * * * 5468 0 0 A 50 413 5920 * * 5588 6527 5974 5490 * * * * * * * 3570 6338 4678 * 5200 50 0 * * * * * * 5468 0 0 K 51 4589 * 2599 1814 5825 6764 * 6622 3863 6476 6452 3411 * 3917 2560 * 5270 7028 * 5868 51 0 * * * * * * 5468 0 0 A 52 2635 * 6187 1731 6728 5420 5683 5843 2899 5207 5846 5391 6724 3802 4185 3604 4897 * * * 52 0 * * * * * * 5468 0 0 M 53 4509 4112 6508 5835 5853 * 3539 5825 2239 1460 4715 5442 * 6973 5619 4883 5729 * * 4994 53 0 * * * * * * 5468 0 0 M 54 * * * * 5838 * * 2220 6742 1041 2664 * * * * * * 3254 * 6640 54 0 * * * * * * 5468 0 0 D 55 2688 * 3851 2275 * 5642 * 5775 1999 6508 * 4629 * 3500 3954 4769 5100 6612 * * 55 0 * * * * * * 5468 0 0 Q 56 4164 * 3911 1298 * 6776 * 6094 3530 5250 6450 5764 * 2605 5817 4188 4494 5421 * * 56 0 * * * * * * 5468 0 0 S 57 516 6617 * * * 2243 * * * * * * * * * 3655 * * * * 57 0 * * * * * * 5468 0 0 R 58 * * 2528 2249 6292 4928 * * 2677 * * 2906 * 3793 3647 3721 5326 * * 5147 58 0 * * * * * * 5468 0 0 M 59 3061 * 2979 1699 * 6535 * * 3000 * 7066 4050 * 3305 5948 4895 4070 4997 * * 59 0 * * * * * * 5468 0 0 A 60 2705 5250 7406 2216 4134 * 5015 4380 3608 4062 * 4561 * 4059 * 2886 4520 5990 5974 6876 60 13 6836 * 0 * * * 5468 1000 0 L 61 * * 5959 * 2541 5614 * 2576 * 1224 3970 6187 * * 6642 * * 4858 * 3761 61 0 * * * * * * 5468 0 0 N 62 3308 * 6515 6450 * 6685 5795 3915 2862 2463 * 3196 * 4487 4116 4090 3901 2980 * * 62 0 * * * * * * 5468 0 0 E 63 3718 * 4932 1529 * 6617 * 4255 2080 4160 * 5208 * 3684 * 5569 4616 5435 * * 63 0 * * * * * * 5468 0 0 A 64 332 5275 * * * 3053 * 6912 * * * * * * * 7028 6806 4852 * * 64 0 * * * * * * 5468 0 0 H 65 * * * 6490 * * 218 * 6344 * * * * 3791 * 4482 * * * * 65 0 * * * * * * 5468 0 0 L 66 5320 * 3756 2788 * 4729 4423 5203 2091 5140 * 2881 * 3409 3390 5104 6299 6094 * * 66 0 * * * * * * 5468 0 0 V 67 1982 * * 4446 6158 6915 5577 2307 5184 3098 7182 5265 * 4269 * 3811 4805 3463 6094 6134 67 0 * * * * * * 5468 0 0 Q 68 * * * 5784 * * 1449 * * * * * * 700 * * * * * * 68 0 * * * * * * 5468 0 0 T 69 3735 * * * 3482 4771 4801 7808 6450 4190 4980 5974 * * 5578 4422 892 5015 * 7114 69 31 5553 * 0 * * * 5468 1593 0 K 70 4081 * 2580 2438 * 4747 7026 * 2256 6836 * 4310 * 3360 3964 3558 5577 6915 * * 70 0 * * * * * * 5468 0 0 L 71 5807 5606 * * 4721 * * 3485 * 817 2853 * * 6535 5470 * 5626 3998 * 6338 71 0 * * * * * * 5468 0 0 I 72 5784 * * * 5889 * * 1239 * 1215 4124 * * * * * * 4233 * * 72 24 5924 * 579 1598 * * 5468 1572 0 E 73 4023 6944 * 4797 * 4888 * 4663 4692 6724 7001 5825 * 1144 5630 3139 3102 4479 * * 73 0 * * * * * * 5468 0 0 G 74 3672 * 5019 2552 5161 5251 5124 4545 2572 4043 5599 4675 * 2618 3791 4657 * 6458 7205 6276 74 23 * 5974 * * * * 5468 0 0 D 75 4839 * 3242 724 5323 5785 * * * 5661 6570 4826 * 4698 6057 4187 6867 * * 5136 75 0 * * * * * 0 5422 0 1000 A 76 758 6733 4915 4740 6944 * * 4071 * 4693 5015 * 6973 * * 4021 4718 3902 * 5876 76 84 4474 6398 0 * * 0 5422 2516 1000 G 77 3503 * 4619 4320 * 2700 * * 3573 5807 * 2612 * 3116 3448 2426 6852 * * * 77 18 6330 * 0 * 962 1039 5409 1000 1662 E 78 3719 6720 6373 3296 * 639 6958 5881 5772 * * 6498 5034 * 6585 5348 5092 6710 * * 78 30 6274 7021 0 * * 0 5455 1000 1000 G 79 5417 * 2972 1577 * 3486 * * 5217 5079 * 3278 * 3257 * 3846 3831 5593 * * 79 52 7047 5152 0 * 927 1077 5446 1000 1714 K 80 4328 * 3372 4085 * 4361 3603 * 1862 6691 * 4371 4405 3440 3540 3696 6286 6019 * * 80 0 * * * * 389 2080 5450 0 2426 M 81 3803 * 4706 5247 4359 5810 5153 2945 6870 3154 3764 5064 4622 3939 6485 4785 4181 2276 * * 81 27 5769 * 511 1746 0 * 5455 1583 1000 K 82 4237 5784 3966 2012 * 4612 6094 6876 4505 5889 * 4316 2389 3445 5626 5339 4476 4110 6476 * 82 18 6312 * 2322 322 * * 5468 1000 0 V 83 * 5646 * * 3482 5784 4893 2241 * 2996 3638 * 3363 5375 * * 4997 2473 6768 3653 83 0 * * * * * * 5468 0 0 S 84 6806 5838 3374 5327 * 4024 5868 * * * * 2762 5586 6821 * 1116 3029 * * 6299 84 0 * * * * * * 5468 0 0 L 85 5853 * * * 3541 * * 2849 * 1021 4162 * 6171 * * * 4546 2710 * * 85 0 * * * * * * 5468 0 0 V 86 * * * * 6353 * * 2412 * 430 6340 * * * * * 5700 5918 * 6752 86 0 * * * * * * 5461 0 0 L 87 5313 * * * 2173 * * 4828 * 1261 2040 * * * * 6069 6711 5714 * 6180 87 0 * * * * * * 5461 0 0 V 88 5129 5604 * * * * * 1870 * 4442 2843 5319 * * * 4506 3996 1473 * * 88 0 * * * * * * 5461 0 0 H 89 * * * * * * 33 * * * * 5471 * * * * * * * * 89 0 * * * * * * 5457 0 0 A 90 274 * * * * 4232 * 6520 * * 5844 * * * * 3598 * 6854 * * 90 0 * * * * * * 5457 0 0 Q 91 6355 * * 1586 * * * * * * 5097 * * 706 * 6334 * * * * 91 0 * * * * * * 5458 0 0 D 92 6649 6493 135 * * 6571 * * * * * 6334 * * * 5469 5474 * * * 92 0 * * * * * * 5458 0 0 H 93 5469 * * * * * 1038 4355 * 5609 6453 * * 2066 * 6337 2755 * * 6598 93 0 * * * * * * 5458 0 0 L 94 * 5817 * * 3659 * * 4338 * 563 3194 * * * * * * 5179 * 4647 94 0 * * * * * * 5458 0 0 M 95 6858 6714 * * * * * 5610 * 5817 263 6292 * * * 4472 5055 5469 * * 95 0 * * * * * * 5458 0 0 T 96 3849 * 6649 * * 4732 * 6337 * * 5821 2462 * 6491 * 2203 1218 6226 * * 96 0 * * * * * * 5458 0 0 S 97 1202 5881 * * * 5767 * 4073 * * * * * * * 3349 1671 4101 * * 97 19 6226 * 2000 415 * * 5458 1000 0 M 98 5817 * 4927 1910 5662 5841 5104 2785 5709 3621 2628 4790 * 3572 * 7271 5607 4905 * 5097 98 0 * * * * * * 5458 0 0 L 99 3876 6772 6493 7071 6376 5469 * 3417 * 1873 4561 5278 * * * 2577 2195 4352 * * 99 0 * * * * * * 5458 0 0 A 100 3244 5582 6292 2154 3204 * * 2934 * 2662 4125 * * 6714 * 5052 4733 4189 * 4341 100 0 * * * * * * 5458 0 0 R 101 * * * 6559 * 6628 5609 2872 2048 2499 4910 5894 * 4365 2441 4774 * 4533 * 4608 101 0 * * * * * * 5458 0 0 E 102 5865 * 1765 2493 5967 6976 * 4476 * 3908 * 4000 * 3701 4484 3375 3975 4985 * * 102 0 * * * * * * 5458 0 0 L 103 * * * * 5313 * * 2621 * 917 2819 6791 * 6772 * 5841 5542 4158 * 5174 103 0 * * * * * * 5458 0 0 I 104 1157 6831 * * 6653 5583 * 2215 * 4134 5660 * * * * 5536 3751 3011 * * 104 0 * * * * * * 5449 0 0 T 105 4515 7265 3824 2156 * 4988 6427 6040 1835 5975 6482 5772 * 5949 3303 4198 4843 4668 * 5343 105 0 * * * * * * 5449 0 0 E 106 * 7039 4405 1082 6485 6506 4040 4547 4072 5470 * 4857 * 3957 3317 5654 4869 * * 6401 106 0 * * * * * * 5449 0 0 L 107 * * * * 2492 * * 2660 * 1506 2255 * * 5828 * * 6485 3761 * * 107 0 * * * * * * 5449 0 0 I 108 * 6721 * * * 6563 * 710 * 2699 5115 6415 * 6481 * 5817 * 2783 * * 108 0 * * * * * * 5436 0 0 E 109 4317 * 2277 2283 * 3388 6689 * 2928 5011 6530 3224 5019 6643 5475 5490 4367 * * 5757 109 0 * * * * * * 5397 0 0 L 110 4747 5851 * 6447 6993 * * 1992 * 1462 2606 * * 4186 * * 5482 3836 * * 110 0 * * * * * * 5397 0 0 H 111 4885 5156 6083 6534 3348 * 3740 4033 * 3883 * 4932 * 4762 5769 5336 * 4858 6809 1138 111 0 * * * * * * 5393 0 0 E 112 * * 4951 1876 * * * * 1474 6726 * 6360 * 2863 2804 * 4916 * * * 112 0 * * * * * * 5397 0 0 K 113 5894 * 6523 2562 * * * * 1394 * 6057 4217 * 3697 2055 5852 5750 * * * 113 0 * * * * * * 5283 0 0 L 114 * * * * 4820 * * 2047 * 1059 3487 * * 5522 * * * 2923 * * 114 0 * * * * * * 5028 0 0 K 115 5176 * 3709 2016 * * * * 2752 4118 * 2477 * 2744 4645 4433 5191 * * * 115 0 * * * * * * 4847 0 0 A 116 125 * * * * * * * * * * * * * * 3593 * * * * 116 0 * * 0 * * * 3797 0 0 //