Phyre 2 Results for P68066

Email | l.a.kelley@imperial.ac.uk
Description | P68066
Date | Thu Jan 5 12:10:55 GMT 2012
Unique Job ID | 01b4daeb11285427

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | d1h16a_ |
|  | 100.0 | 79 | Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:PFL-like
2 | c2y8nC_ |
|  | 100.0 | 29 | PDB header:lyase Chain: C: PDB Molecule:4-hydroxyphenylacetate decarboxylase large subunit; PDBTitle: crystal structure of glycyl radical enzyme
3 | d1r9da_ |
|  | 100.0 | 31 | Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:PFL-like
4 | c2f3oB_ |
|  | 100.0 | 27 | PDB header:unknown function Chain: B: PDB Molecule:pyruvate formate-lyase 2; PDBTitle: crystal structure of a glycyl radical enzyme from archaeoglobus2 fulgidus
5 | d1aisa1 |
|  | 26.3 | 27 | Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain
6 | d1nh2a1 |
|  | 25.1 | 15 | Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain
7 | d1qnaa1 |
|  | 25.0 | 17 | Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain
8 | d1nh2a2 |
|  | 24.8 | 42 | Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain
9 | d1mp9a1 |
|  | 23.8 | 33 | Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain
10 | d1aisa2 |
|  | 23.5 | 42 | Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain
11 | d1qnaa2 |
|  | 22.9 | 42 | Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain
12 | d1cdwa2 |
|  | 22.3 | 42 | Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain
13 | d1mp9a2 |
|  | 21.5 | 42 | Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain
14 | d1cdwa1 |
|  | 19.4 | 11 | Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain
15 | d1pg5b2 |
|  | 18.9 | 17 | Fold:Rubredoxin-like Superfamily:Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain Family:Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain
16 | c1wd6B_ |
|  | 18.8 | 25 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:protein ydhr; PDBTitle: crystal structure of jw1657 from escherichia coli
17 | c3iz5P_ |
|  | 16.9 | 25 | PDB header:ribosome Chain: P: PDB Molecule:60s ribosomal protein l15 (l15e); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
18 | c2z1dA_ |
|  | 16.3 | 10 | PDB header:metal binding protein Chain: A: PDB Molecule:hydrogenase expression/formation protein hypd; PDBTitle: crystal structure of [nife] hydrogenase maturation protein, hypd from2 thermococcus kodakaraensis
19 | d2hiqa1 |
|  | 15.7 | 25 | Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Hypothetical protein YdhR
20 | c1vraB_ |
|  | 14.0 | 15 | PDB header:transferase Chain: B: PDB Molecule:arginine biosynthesis bifunctional protein argj; PDBTitle: crystal structure of arginine biosynthesis bifunctional protein argj2 (10175521) from bacillus halodurans at 2.00 a resolution
21 | c1yo8A_ |
| not modelled | 12.8 | 17 | PDB header:cell adhesion Chain: A: PDB Molecule:thrombospondin-2; PDBTitle: structure of the c-terminal domain of human thrombospondin-2
22 | c3h0mE_ |
| not modelled | 12.1 | 21 | PDB header:ligase Chain: E: PDB Molecule:aspartyl/glutamyl-trna(asn/gln) amidotransferase PDBTitle: structure of trna-dependent amidotransferase gatcab from2 aquifex aeolicus
23 | d1xlya_ |
| not modelled | 11.8 | 33 | Fold:RNA-binding protein She2p Superfamily:RNA-binding protein She2p Family:RNA-binding protein She2p
24 | d2fzcb2 |
| not modelled | 11.4 | 15 | Fold:Rubredoxin-like Superfamily:Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain Family:Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain
25 | d1vqom1 |
| not modelled | 10.4 | 24 | Fold:Ribosomal proteins S24e, L23 and L15e Superfamily:Ribosomal proteins S24e, L23 and L15e Family:L15e
26 | c4a1cL_ |
| not modelled | 10.3 | 25 | PDB header:ribosome Chain: L: PDB Molecule:ribosomal protein l15; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 4.
27 | d1jj2l_ |
| not modelled | 10.2 | 24 | Fold:Ribosomal proteins S24e, L23 and L15e Superfamily:Ribosomal proteins S24e, L23 and L15e Family:L15e
28 | c2kwuA_ |
| not modelled | 9.9 | 36 | PDB header:protein binding/signaling protein Chain: A: PDB Molecule:dna polymerase iota; PDBTitle: solution structure of ubm2 of murine polymerase iota in complex with2 ubiquitin
29 | d1v82a_ |
| not modelled | 9.8 | 20 | Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:1,3-glucuronyltransferase
30 | c2vzkD_ |
| not modelled | 9.8 | 15 | PDB header:transferase Chain: D: PDB Molecule:glutamate n-acetyltransferase 2 beta chain; PDBTitle: structure of the acyl-enzyme complex of an n-terminal2 nucleophile (ntn) hydrolase, oat2
31 | c2z8uQ_ |
| not modelled | 9.5 | 32 | PDB header:transcription Chain: Q: PDB Molecule:tata-box-binding protein; PDBTitle: methanococcus jannaschii tbp
32 | c2q82A_ |
| not modelled | 9.4 | 43 | PDB header:structural protein Chain: A: PDB Molecule:core protein p7; PDBTitle: crystal structure of core protein p7 from pseudomonas phage2 phi12. northeast structural genomics target oc1
33 | c1eysH_ |
| not modelled | 8.7 | 11 | PDB header:electron transport Chain: H: PDB Molecule:photosynthetic reaction center; PDBTitle: crystal structure of photosynthetic reaction center from a2 thermophilic bacterium, thermochromatium tepidum
34 | d8ruci_ |
| not modelled | 8.6 | 25 | Fold:RuBisCO, small subunit Superfamily:RuBisCO, small subunit Family:RuBisCO, small subunit
35 | d1gk8i_ |
| not modelled | 8.5 | 17 | Fold:RuBisCO, small subunit Superfamily:RuBisCO, small subunit Family:RuBisCO, small subunit
36 | c2hx6A_ |
| not modelled | 8.4 | 14 | PDB header:hydrolase Chain: A: PDB Molecule:ribonuclease; PDBTitle: solution structure analysis of the phage t42 endoribonuclease regb
37 | d1cmwa2 |
| not modelled | 8.4 | 28 | Fold:PIN domain-like Superfamily:PIN domain-like Family:5' to 3' exonuclease catalytic domain
38 | d1ej7s_ |
| not modelled | 8.3 | 29 | Fold:RuBisCO, small subunit Superfamily:RuBisCO, small subunit Family:RuBisCO, small subunit
39 | d1tfra2 |
| not modelled | 8.3 | 18 | Fold:PIN domain-like Superfamily:PIN domain-like Family:5' to 3' exonuclease catalytic domain
40 | d1wdds_ |
| not modelled | 7.7 | 21 | Fold:RuBisCO, small subunit Superfamily:RuBisCO, small subunit Family:RuBisCO, small subunit
41 | d1ffki_ |
| not modelled | 7.6 | 31 | Fold:Ribosomal proteins S24e, L23 and L15e Superfamily:Ribosomal proteins S24e, L23 and L15e Family:L15e
42 | c3al0B_ |
| not modelled | 7.4 | 20 | PDB header:ligase/rna Chain: B: PDB Molecule:aspartyl/glutamyl-trna(asn/gln) amidotransferase subunit b; PDBTitle: crystal structure of the glutamine transamidosome from thermotoga2 maritima in the glutamylation state.
43 | c1d3uA_ |
| not modelled | 7.4 | 42 | PDB header:gene regulation/dna Chain: A: PDB Molecule:tata-binding protein; PDBTitle: tata-binding protein/transcription factor (ii)b/bre+tata-2 box complex from pyrococcus woesei
44 | c2j6pF_ |
| not modelled | 7.3 | 16 | PDB header:oxidoreductase Chain: F: PDB Molecule:sb(v)-as(v) reductase; PDBTitle: structure of as-sb reductase from leishmania major
45 | c3eikB_ |
| not modelled | 7.3 | 17 | PDB header:transcription Chain: B: PDB Molecule:tata-box-binding protein; PDBTitle: double stranded dna binding protein
46 | d2v6ai1 |
| not modelled | 7.2 | 17 | Fold:RuBisCO, small subunit Superfamily:RuBisCO, small subunit Family:RuBisCO, small subunit
47 | c1mp9B_ |
| not modelled | 7.0 | 33 | PDB header:dna binding protein Chain: B: PDB Molecule:tata-binding protein; PDBTitle: tbp from a mesothermophilic archaeon, sulfolobus2 acidocaldarius
48 | c3gqjA_ |
| not modelled | 6.9 | 25 | PDB header:unknown function Chain: A: PDB Molecule:cell inhibiting factor (cif); PDBTitle: crystal structure of cell inhibiting factor (cif) from photorhabdus2 luminescens
49 | d2f2ab2 |
| not modelled | 6.9 | 14 | Fold:Glutamine synthetase/guanido kinase Superfamily:Glutamine synthetase/guanido kinase Family:GatB/GatE catalytic domain-like
50 | c3f3hA_ |
| not modelled | 6.5 | 27 | PDB header:antitumor protein Chain: A: PDB Molecule:immunomodulatory protein ling zhi-8; PDBTitle: crystal structure and anti-tumor activity of lz-8 from the fungus2 ganoderma lucidium
51 | d1uzdc1 |
| not modelled | 6.5 | 17 | Fold:RuBisCO, small subunit Superfamily:RuBisCO, small subunit Family:RuBisCO, small subunit
52 | c3ol0C_ |
| not modelled | 6.3 | 50 | PDB header:de novo protein Chain: C: PDB Molecule:de novo designed monomer trefoil-fold sub-domain which PDBTitle: crystal structure of monofoil-4p homo-trimer: de novo designed monomer2 trefoil-fold sub-domain which forms homo-trimer assembly
53 | d1v5ra1 |
| not modelled | 6.3 | 33 | Fold:N domain of copper amine oxidase-like Superfamily:GAS2 domain-like Family:GAS2 domain
54 | c1s1iL_ |
| not modelled | 6.1 | 35 | PDB header:ribosome Chain: L: PDB Molecule:60s ribosomal protein l15-a; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h.
55 | c3q3jA_ |
| not modelled | 6.1 | 22 | PDB header:membrane protein/protein binding Chain: A: PDB Molecule:plexin-a2; PDBTitle: crystal structure of plexin a2 rbd in complex with rnd1
56 | c3su8X_ |
| not modelled | 6.1 | 29 | PDB header:apoptosis/signaling protein Chain: X: PDB Molecule:plexin-b1; PDBTitle: crystal structure of a truncated intracellular domain of plexin-b1 in2 complex with rac1
57 | d2nlua1 |
| not modelled | 5.9 | 39 | Fold:SH3-like barrel Superfamily:Tudor/PWWP/MBT Family:PWWP domain
58 | d1eysh1 |
| not modelled | 5.8 | 11 | Fold:PRC-barrel domain Superfamily:PRC-barrel domain Family:Photosynthetic reaction centre, H-chain, cytoplasmic domain
59 | c3ajfA_ |
| not modelled | 5.6 | 43 | PDB header:viral protein Chain: A: PDB Molecule:non-structural protein 3; PDBTitle: structural insigths into dsrna binding and rna silencing suppression2 by ns3 protein of rice hoja blanca tenuivirus
60 | c1ux6A_ |
| not modelled | 5.5 | 19 | PDB header:cell adhesion Chain: A: PDB Molecule:thrombospondin-1; PDBTitle: structure of a thrombospondin c-terminal fragment reveals a2 novel calcium core in the type 3 repeats
61 | d1xo1a2 |
| not modelled | 5.4 | 22 | Fold:PIN domain-like Superfamily:PIN domain-like Family:5' to 3' exonuclease catalytic domain
62 | c1zswA_ |
| not modelled | 5.1 | 17 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:glyoxalase family protein; PDBTitle: crystal structure of bacillus cereus metallo protein from glyoxalase2 family
63 | d1v54b1 |
| not modelled | 5.1 | 11 | Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Periplasmic domain of cytochrome c oxidase subunit II
64 | c3bl9B_ |
| not modelled | 5.0 | 16 | PDB header:hydrolase Chain: B: PDB Molecule:scavenger mrna-decapping enzyme dcps; PDBTitle: synthetic gene encoded dcps bound to inhibitor dg157493
65 | c3gr1A_ |
| not modelled | 5.0 | 22 | PDB header:membrane protein Chain: A: PDB Molecule:protein prgh; PDBTitle: periplamic domain of the t3ss inner membrane protein prgh2 from s.typhimurium (fragment 170-392)