Phyre 2 alignment of P39285 with c3dedB_

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Job Description | P39285
Confidence | 50.40% | Date | Thu Jan 5 11:58:57 GMT 2012
Rank | 119 | Aligned Residues | 38
% Identity | 8% | Template | c3dedB_
PDB info | PDB header:membrane protein | Chain: B: PDB Molecule:probable hemolysin; | PDBTitle: c-terminal domain of probable hemolysin from chromobacterium violaceum
Resolution | 2.14 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 923 | . | . | . | . | . | . | 930 | . | . | . | . |  | . | . | . | . | . | 940 | . | . | . | . | . | . | . | . | . | 950 | . | . | . |  |  |  | . | . | . | . | . | . | 960
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |
Query Sequence |  | I | S | G | L | I | I | L | F | E | K | P | I | . | R | I | G | D | T | V | T | I | R | D | L | T | G | S | V | T | K | I | N | . | . | . | T | R | A | T | T | I | S
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | L | A | G | V | X | L | Y | Q | L | G | R | V | P | S | V | T | D | R | F | E | W | N | G | F | S | F | E | V | V | D | X | D | R | T | R | V | D | K | I | L | V | Q
Template Known Secondary structure |  |  |  |  |  |  |  |  |  |  |  | S | S |  |  | T | T |  |  |  |  |  | T | T |  |  |  |  |  |  |  |  |  | T | T |  |  |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 383 | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420 | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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