Phyre 2 alignment of P39285 with d2je6i1

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Job Description | P39285
Confidence | 23.09% | Date | Thu Jan 5 11:58:57 GMT 2012
Rank | 332 | Aligned Residues | 42
% Identity | 17% | Template | d2je6i1
SCOP info | OB-fold | Nucleic acid-binding proteins | Cold shock DNA-binding domain-like
Resolution | 1.6

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 935 | . | . | . | . | 940 | . | . | . | . | . | . | . | . | . | 950 | . | . | . | . | . | . | . | . | . | 960 | . | . | . | . | . | . | . | . | . | 970 | . | . | . | . | . | . | . | . | . | 980 | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | R | I | G | D | T | V | T | I | R | D | L | T | G | S | V | T | K | I | N | T | R | A | T | T | I | S | D | W | D | R | K | E | I | I | V | P | N | K | A | F | I | T | E | Q | F | I | N
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | K | I | N | D | I | V | I | . | . | . | . | . | G | L | V | E | D | V | E | I | Y | G | W | V | V | D | I | K | A | P | Y | K | A | Y | L | P | A | S | N | L | L | G | R | S | I | N | V
Template Known Secondary structure |  |  | T | T |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  | S | S |  |  |  |  |  |  | S | S | S | S |  |  |  |  |  |  |  |  |  |  | T | S |  |  |  | T
Template Predicted Secondary structure |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 71 | . | . | . | . | . | . |  |  |  |  |  | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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