Phyre 2 alignment of P39285 with d2ba0a1

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Job Description | P39285
Confidence | 20.62% | Date | Thu Jan 5 11:58:57 GMT 2012
Rank | 442 | Aligned Residues | 40
% Identity | 15% | Template | d2ba0a1
SCOP info | OB-fold | Nucleic acid-binding proteins | Cold shock DNA-binding domain-like
Resolution | 2.70

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 935 | . | . | . | . | 940 | . | . | . | . | . | . | . | . | . | 950 | . | . | . | . | . | . | . | . | . | 960 | . | . | . | . | . | . | . | . | . | 970 | . | . | . | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | R | I | G | D | T | V | T | I | R | D | L | T | G | S | V | T | K | I | N | T | R | A | T | T | I | S | D | W | D | R | K | E | I | I | V | P | N | K | A | F | I | T | E | Q | F
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | S | V | G | D | V | V | I | . | . | . | . | . | G | I | I | R | E | V | A | A | N | G | W | A | V | D | I | Y | S | P | Y | Q | A | F | L | P | V | S | E | N | P | E | M | K | P
Template Known Secondary structure |  |  | T | T |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  | S | S |  |  |  |  |  |  | S | S | S | S |  |  |  |  |  | G | G | G |  | T | T |  |  | T
Template Predicted Secondary structure |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 56 | . | . | . | 60 | . | . |  |  |  |  |  | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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