Phyre 2 alignment of P39285 with c3p8bB_

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Job Description | P39285
Confidence | 33.35% | Date | Thu Jan 5 11:58:57 GMT 2012
Rank | 210 | Aligned Residues | 42
% Identity | 17% | Template | c3p8bB_
PDB info | PDB header:transferase/transcription | Chain: B: PDB Molecule:transcription antitermination protein nusg; | PDBTitle: x-ray crystal structure of pyrococcus furiosus transcription2 elongation factor spt4/5
Resolution | 1.80 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 933 | . | . | . | . | . | . | 940 | . | . | . |  |  |  |  |  | . | . | . | . | . | . | 950 | . | . |  |  |  |  |  | . | . | . | . | . | . | . | 960 | . | . | . | . | . | . | . | . | . | 970 | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | P | I | R | I | G | D | T | V | T | I | R | . | . | . | . | . | D | L | T | G | S | V | T | K | I | . | . | . | . | . | N | T | R | A | T | T | I | S | D | W | D | R | K | E | I | I | V | P | N | K | A | F
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | G | L | E | P | G | D | L | V | E | V | I | A | G | P | F | K | G | Q | K | A | K | V | V | K | I | D | E | S | K | D | E | V | V | V | Q | F | I | D | A | I | V | P | I | P | V | T | I | K | G | D | Y | V
Template Known Secondary structure |  | T |  |  | T | T |  |  |  |  |  |  | S | S | T | T | T | T |  |  |  |  |  |  |  |  |  | T | T | T | T |  |  |  |  |  |  | S | S |  | S | S |  |  |  |  |  |  |  | G | G | G |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 91 | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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