Phyre 2 alignment of P39285 with c2qqsB_

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Job Description | P39285
Confidence | 43.49% | Date | Thu Jan 5 11:58:57 GMT 2012
Rank | 142 | Aligned Residues | 45
% Identity | 13% | Template | c2qqsB_
PDB info | PDB header:oxidoreductase | Chain: B: PDB Molecule:jmjc domain-containing histone demethylation | PDBTitle: jmjd2a tandem tudor domains in complex with a trimethylated2 histone h4-k20 peptide
Resolution | 2.82 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 932 | . | . | . | . | . | . | . | 940 | . | . |  |  |  | . | . |  |  | . | . | . | . | . | 950 | . | . | . | . | . | . | . |  | . | . | 960 | . | . | . | . | . | . | . | . | . | 970 | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | K | P | I | R | I | G | D | T | V | T | I | . | . | . | R | D | . | . | L | T | G | S | V | T | K | I | N | T | R | A | T | . | T | I | S | D | W | D | R | K | E | I | I | V | P | N | K | A | F | I | T
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | G | P | P | A | E | G | E | V | V | Q | V | R | W | T | D | G | Q | V | Y | G | A | K | F | V | A | S | H | P | I | Q | M | Y | Q | V | E | F | E | D | G | S | Q | L | V | V | K | R | D | D | V | Y | T
Template Known Secondary structure |  |  |  |  |  | T | T |  |  |  |  |  |  |  | T | T | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | S | S |  |  |  |  |  |  |  | G | G | G |  | B |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 955 | . | . | . | . | 960 | . | . | . | . | . | . | . | . | . | 970 | . | . | . | . | . | . | . | . | . | 980 | . | . | . | . | . | . | . | . | . | 990 | . | . | . | . | . | . | . | . | . | 1000 | . | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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