Phyre 2 alignment of P39285 with c1cz5A_

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Job Description | P39285
Confidence | 25.84% | Date | Thu Jan 5 11:58:57 GMT 2012
Rank | 278 | Aligned Residues | 29
% Identity | 21% | Template | c1cz5A_
PDB info | PDB header:hydrolase | Chain: A: PDB Molecule:vcp-like atpase; | PDBTitle: nmr structure of vat-n: the n-terminal domain of vat (vcp-2 like atpase of thermoplasma)
Resolution | UNK

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 929 | 930 | . | . | . | . | . | . | . | . | . | 940 | . | . | . | . | . | . |  |  |  | . | . | . | 950 | . | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | L | F | E | K | P | I | R | I | G | D | T | V | T | I | R | D | L | T | . | . | . | G | S | V | T | K | I | N | T | R | A | T
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | L | I | R | R | P | M | L | E | Q | D | N | I | S | V | P | G | L | T | L | A | G | Q | T | G | L | L | F | K | V | V | K | T
Template Known Secondary structure |  |  | S | S |  |  |  |  | T | T |  |  |  |  |  | S | S |  |  |  | S | S |  |  |  |  | S |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 124 | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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