Phyre 2 alignment of P39285 with c2xdpA_

Return to main results | Retrieve Phyre Job Id

Job Description | P39285
Confidence | 42.37% | Date | Thu Jan 5 11:58:57 GMT 2012
Rank | 149 | Aligned Residues | 45
% Identity | 16% | Template | c2xdpA_
PDB info | PDB header:oxidoreductase | Chain: A: PDB Molecule:lysine-specific demethylase 4c; | PDBTitle: crystal structure of the tudor domain of human jmjd2c
Resolution | 1.56 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 932 | . | . | . | . | . | . | . | 940 | . | . |  |  |  | . | . |  |  | . | . | . | . | . | 950 | . | . | . | . | . | . | . | . |  | . | 960 | . | . | . | . | . | . | . | . | . | 970 | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | K | P | I | R | I | G | D | T | V | T | I | . | . | . | R | D | . | . | L | T | G | S | V | T | K | I | N | T | R | A | T | T | . | I | S | D | W | D | R | K | E | I | I | V | P | N | K | A | F | I | T
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | G | P | P | A | E | G | E | V | V | Q | V | K | W | P | D | G | K | L | Y | G | A | K | Y | F | G | S | N | I | A | H | M | Y | Q | V | E | F | E | D | G | S | Q | I | A | M | K | R | E | D | I | Y | T
Template Known Secondary structure |  |  |  |  |  | T | T |  |  |  |  |  |  |  | T | T | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | S |  |  |  |  |  |  | G | G | G |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 935 | . | . | . | . | 940 | . | . | . | . | . | . | . | . | . | 950 | . | . | . | . | . | . | . | . | . | 960 | . | . | . | . | . | . | . | . | . | 970 | . | . | . | . | . | . | . | . | . | 980 | . | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys |
Disclaimer
Terms and Conditions