Phyre 2 alignment of P39285 with c2xhcA_

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Job Description | P39285
Confidence | 27.09% | Date | Thu Jan 5 11:58:57 GMT 2012
Rank | 265 | Aligned Residues | 37
% Identity | 24% | Template | c2xhcA_
PDB info | PDB header:transcription | Chain: A: PDB Molecule:transcription antitermination protein nusg; | PDBTitle: crystal structure of thermotoga maritima n-utilization substance g2 (nusg)
Resolution | 2.45 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 933 | . | . | . | . | . | . | 940 | . | . | . |  |  |  |  |  | . | . | . | . | . | . | 950 | . | . |  |  |  | . | . | . | . | . | . | . | 960 | . | . | . | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | P | I | R | I | G | D | T | V | T | I | R | . | . | . | . | . | D | L | T | G | S | V | T | K | I | . | . | . | N | T | R | A | T | T | I | S | D | W | D | R | K | E | I | I | V
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | G | F | K | V | G | D | M | V | K | I | I | S | G | P | F | E | D | F | A | G | V | I | K | E | I | D | P | E | R | Q | E | L | K | V | N | V | T | I | F | G | R | E | T | P | V
Template Known Secondary structure |  |  |  |  | T | T |  |  |  |  |  |  | S | S | T | T | T | T |  |  |  |  |  |  |  |  |  | T | T | T | T |  |  |  |  |  |  |  |  | T | T |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 298 | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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