Phyre 2 alignment of P39285 with d1u7ka_

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Job Description | P39285
Confidence | 22.60% | Date | Thu Jan 5 11:58:57 GMT 2012
Rank | 355 | Aligned Residues | 44
% Identity | 14% | Template | d1u7ka_
SCOP info | Retrovirus capsid protein, N-terminal core domain | Retrovirus capsid protein, N-terminal core domain | Retrovirus capsid protein, N-terminal core domain
Resolution | 1.85

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 961 | . | . | . | . | . | . | . | . | 970 | . | . | . | . | . | . | . | . | . | 980 | . | . | . | . | . | . | . | . | . | 990 | . | . | . | . | . | . | . | . | . | 1000 | . | . | . | . | . | . | . | . | . | 1010 | . | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | D | W | D | R | K | E | I | I | V | P | N | K | A | F | I | T | E | Q | F | I | N | W | S | L | S | D | S | V | T | R | V | V | L | T | I | P | A | P | A | D | A | N | S | E | E | V | T | E | I | L | L | T | A | A | R | R | C
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | G | G | N | G | Q | L | Q | Y | W | P | . | . | . | F | S | S | S | D | L | Y | N | W | K | N | N | N | P | . | . | . | . | . | . | . | . | . | . | S | F | S | E | D | P | G | K | L | T | A | L | I | E | S | V | L | T | T | H
Template Known Secondary structure |  |  | T | T | S | S |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  | T | S |  | . | . | . | . | . | . | . | . | . | . |  | T | T | T |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 5 | . | . | . | . | 10 | . | . | . | . |  |  |  | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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