17/01/2012 11:10:03 : INFO  : Run start: Tue Jan 17 11:10:02 GMT 2012
17/01/2012 11:10:12 : INFO  : Initialised job
17/01/2012 11:10:14 : INFO  : Renaming log file 'phyre2_20120117_111001.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/0106ad3fe443e7d2/phyre_20120117_111001.log'
17/01/2012 11:10:16 : INFO  : Initialised job:
Sequence
>batch____
MRLIITFLMAWCLSWGAYAATAPDSKQITQELEQAKAAKPAQPEVVEALQSALNALEERK
GSLERIKQYQQVIDNYPKLSATLRAQLNNMRDEPRSVSPGMSTDALNQEILQVSSQLLDK
SRQAQQEQERAREIADSLNQLPQQQTDARRQLNEIERRLGTLTGNTPLNQAQNFALQSDS
ARLKALVDELELAQLSANNRQELARLRSELAEKESQQLDAYLQALRNQLNSQRQLEAERA
LESTELLAENSADLPKDIVAQFKINRELSAALNQQAQRMDLVASQQRQAASQTLQVRQAL
NTLREQSQWLGSSNLLGEALRAQVARLPEMPKPQQLDTEMAQLRVQRLRYEDLLNKQPLL
RQIHQADGQPLTAEQNRILEAQLRTQRELLNSLLQGGDTLLLELTKLKVSNGQLEDALKE
VNEATHRYLFWTSDVRPMTIAWPLEIAQDLRRLISLDTFSQLGKASVMMLTSKETILPLF
GALILVGCSIYSRRYFTRFLERSAAKVGKVTQDHFWLTLRTLFWSILVASPLPVLWMTLG
YGLREAWPYPLAVAIGDGVTATVPLLWVVMICATFARPNGLFIAHFGWPRERVSRGMRYY
LMSIGLIVPLIMALMMFDNLDDREFSGSLGRLCFILICGALAVVTLSLKKAGIPLYLNKE
GSGDNITNHMLWNMMIGAPLVAILASAVGYLATAQALLARLETSVAIWFLLLVVYHVIRR
WMLIQRRRLAFDRAKHRRAEMLAQRARGEEEAHHHSSPEGAIEVDESEVDLDAISAQSLR
LVRSILMLIALLSVIVLWSEIHSAFGFLENISLWDVTSTVQGVESLEPITLGAVLIAILV
FIITTQLVRNLPALLELAILQHLDLTPGTGYAITTITKYLLMLIGGLVGFSMIGIEWSKL
QWLVAALGVGLGFGLQEIFANFISGLIILFEKPIRIGDTVTIRDLTGSVTKINTRATTIS
DWDRKEIIVPNKAFITEQFINWSLSDSVTRVVLTIPAPADANSEEVTEILLTAARRCSLV
IDNPAPEVFLVDLQQGIQIFELRIYAAEMGHRMPLRHEIHQLILAGFHAHGIDMPFPPFQ
MRLESLNGKQTGRTLTSAGKGRQAGSL

17/01/2012 11:10:18 : INFO  : Checked sequence
17/01/2012 11:10:22 : INFO  : Finding homologues with PSI-BLAST
17/01/2012 11:10:24 : INFO  : PSI-BLAST 3 iterations
17/01/2012 11:15:07 : INFO  : PSI-BLAST 5 iterations
17/01/2012 11:34:21 : INFO  : Finished PSI-BLAST
17/01/2012 11:34:25 : INFO  : Running Buildali to generate a3m file
17/01/2012 17:08:46 : INFO  : Converting to HMM
17/01/2012 17:17:25 : INFO  : Calibrating HMM
17/01/2012 17:18:09 : INFO  : Searching HMM database
17/01/2012 17:39:29 : INFO  : Finished buildali
17/01/2012 17:39:32 : INFO  : Predicting secondary structure
17/01/2012 17:39:49 : INFO  : Predicted secondary structure (PSI-Pred)
17/01/2012 17:39:54 : INFO  : Predicting Disordered regions
17/01/2012 17:40:02 : INFO  : Predicted Disorder (Disopred)
17/01/2012 17:40:05 : INFO  : Running memsat_svm check
17/01/2012 17:49:13 : INFO  : Running memsat_svm full
17/01/2012 17:58:39 : INFO  : Predicted Transmembrane (memsat_svm) ID '0106ad3fe443e7d2'
17/01/2012 17:58:42 : INFO  : Initialising fold library search
17/01/2012 17:58:49 : INFO  : Initialised search input
17/01/2012 17:58:53 : INFO  : Building Ensemble models
17/01/2012 17:59:00 : INFO  : Building hh.c2vv5D_.model.1.pdb
17/01/2012 17:59:30 : INFO  : Building hh.c1ciiA_.model.2.pdb
17/01/2012 17:59:54 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/0106ad3fe443e7d2/hh.c1ciiA_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/0106ad3fe443e7d2/c1ciiA_.5.pdb
17/01/2012 18:00:03 : INFO  : Building hh.c1c1gA_.model.3.pdb
17/01/2012 18:00:27 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/0106ad3fe443e7d2/hh.c1c1gA_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/0106ad3fe443e7d2/c1c1gA_.6.pdb
17/01/2012 18:00:35 : INFO  : Building hh.c1yvlB_.model.4.pdb
17/01/2012 18:01:01 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/0106ad3fe443e7d2/hh.c1yvlB_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/0106ad3fe443e7d2/c1yvlB_.7.pdb
17/01/2012 18:01:08 : INFO  : Building hh.c3cwgA_.model.5.pdb
17/01/2012 18:01:32 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/0106ad3fe443e7d2/hh.c3cwgA_.model.5.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/0106ad3fe443e7d2/c3cwgA_.16.pdb
17/01/2012 18:01:39 : INFO  : Building c2vv5D_.1.pdb
17/01/2012 18:02:07 : INFO  : Building d2vv5a2.2.pdb
17/01/2012 18:02:35 : INFO  : Building d2vv5a1.3.pdb
17/01/2012 18:03:04 : INFO  : Building d2vv5a3.4.pdb
17/01/2012 18:03:31 : INFO  : Building c1ciiA_.5.pdb
17/01/2012 18:03:59 : INFO  : Building c1c1gA_.6.pdb
17/01/2012 18:04:27 : INFO  : Building c1yvlB_.7.pdb
17/01/2012 18:04:53 : INFO  : Building c1sjjB_.8.pdb
17/01/2012 18:05:22 : INFO  : Building c2oevA_.9.pdb
17/01/2012 18:05:51 : INFO  : Building c1bf5A_.10.pdb
17/01/2012 18:06:21 : INFO  : Building c3ojaB_.11.pdb
17/01/2012 18:06:49 : INFO  : Building c2oexB_.12.pdb
17/01/2012 18:07:16 : INFO  : Building c1bg1A_.13.pdb
17/01/2012 18:07:44 : INFO  : Building c2efrB_.14.pdb
17/01/2012 18:08:11 : INFO  : Building c3na7A_.15.pdb
17/01/2012 18:08:39 : INFO  : Building c3cwgA_.16.pdb
17/01/2012 18:09:08 : INFO  : Building c3dtpA_.17.pdb
17/01/2012 18:09:38 : INFO  : Building c1f5nA_.18.pdb
17/01/2012 18:10:05 : INFO  : Building c1ei3C_.19.pdb
17/01/2012 18:10:28 : INFO  : Building c1g8xB_.20.pdb
17/01/2012 18:13:28 : INFO  : Finished HH model building
17/01/2012 18:13:31 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
17/01/2012 18:15:03 : INFO  : html domain output complete ID '0106ad3fe443e7d2'
17/01/2012 18:56:37 : INFO  : Run end  : Tue Jan 17 18:56:36 GMT 2012
