BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (228 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_C1DI48 Ribonuclease PH n=157 Tax=Bacteria RepID=RNPH_AZOVD 323 3e-87 UniRef50_Q2P6N2 Ribonuclease PH n=933 Tax=cellular organisms Rep... 310 3e-83 UniRef50_B1I4W9 Ribonuclease PH n=67 Tax=Bacteria RepID=RNPH_DESAP 269 5e-71 UniRef50_A8EY33 Ribonuclease PH n=14 Tax=Rickettsieae RepID=RNPH... 258 8e-68 UniRef50_C1RJ73 RNAse PH n=1 Tax=Cellulomonas flavigena DSM 2010... 257 2e-67 UniRef50_D0DA55 Ribonuclease PH n=2 Tax=Rhodobacteraceae RepID=D... 257 2e-67 UniRef50_C9KNG5 tRNA nucleotidyltransferase n=2 Tax=Firmicutes R... 256 3e-67 UniRef50_A1KID0 Ribonuclease PH n=18 Tax=Bacteria RepID=RNPH_MYCBP 255 7e-67 UniRef50_B9MQJ8 Ribonuclease PH n=58 Tax=Bacteria RepID=RNPH_ANATD 255 8e-67 UniRef50_Q2JKT3 Ribonuclease PH n=22 Tax=Bacteria RepID=RNPH_SYNJB 245 7e-64 UniRef50_Q83HF6 Ribonuclease PH n=17 Tax=Bacteria RepID=RNPH_TROW8 236 4e-61 UniRef50_B2UNC2 Ribonuclease PH n=3 Tax=Verrucomicrobia RepID=B2... 236 4e-61 UniRef50_C2D8L5 tRNA nucleotidyltransferase n=1 Tax=Atopobium va... 231 1e-59 UniRef50_D1CFI4 Ribonuclease PH n=3 Tax=Bacteria RepID=D1CFI4_THET1 230 2e-59 UniRef50_B7KB81 Ribonuclease PH n=7 Tax=Bacteria RepID=RNPH_CYAP7 226 4e-58 UniRef50_Q7U9I1 Ribonuclease PH n=14 Tax=Cyanobacteria RepID=RNP... 216 5e-55 UniRef50_A9FGR1 Ribonuclease PH n=2 Tax=Bacteria RepID=A9FGR1_SORC5 213 4e-54 UniRef50_C1CZJ0 Putative tRNA nucleotidyltransferase (Phosphate-... 186 5e-46 UniRef50_C1XM20 Ribonuclease PH n=2 Tax=Meiothermus RepID=C1XM20... 186 8e-46 UniRef50_Q9RU11 Ribonuclease PH n=2 Tax=Deinococcus RepID=RNPH_D... 180 3e-44 UniRef50_A2BKC0 Probable exosome complex exonuclease 1 n=32 Tax=... 102 1e-20 UniRef50_Q6L223 Ribonuclease PH n=1 Tax=Picrophilus torridus Rep... 100 6e-20 UniRef50_UPI000038E13A exosome complex exonuclease Rrp41 n=1 Tax... 96 7e-19 UniRef50_B6YSI2 Probable exosome complex exonuclease 1 n=33 Tax=... 92 1e-17 UniRef50_A9A5C9 Probable exosome complex exonuclease 1 n=3 Tax=A... 89 1e-16 UniRef50_D2VEP3 Predicted protein n=1 Tax=Naegleria gruberi RepI... 80 5e-14 UniRef50_Q9SP08 Exonuclease RRP41 n=15 Tax=Magnoliophyta RepID=Q... 77 3e-13 UniRef50_UPI00019098A6 ribonuclease PH n=1 Tax=Rhizobium etli IE... 75 2e-12 UniRef50_Q6L224 Ribonuclease PH n=2 Tax=Thermoplasmatales RepID=... 74 5e-12 UniRef50_D2EG59 3' exoribonuclease n=1 Tax=Candidatus Parvarchae... 72 1e-11 UniRef50_B3T6G7 Putative 3' exoribonuclease family, domain 1 n=1... 72 2e-11 UniRef50_Q9S7G6 Polynucleotide phosphorylase n=36 Tax=cellular o... 70 6e-11 UniRef50_Q17533 Putative exosome complex exonuclease RRP41 n=4 T... 69 1e-10 UniRef50_C7DI01 3' exoribonuclease n=1 Tax=Candidatus Micrarchae... 69 2e-10 UniRef50_C3N5R4 Probable exosome complex exonuclease 2 n=12 Tax=... 66 7e-10 UniRef50_Q74NF6 NEQ248 n=1 Tax=Nanoarchaeum equitans RepID=Q74NF... 66 8e-10 UniRef50_Q8TGX5 Probable exosome complex exonuclease 2 n=8 Tax=A... 65 1e-09 UniRef50_A9VBQ1 Predicted protein n=2 Tax=Fungi/Metazoa group Re... 64 4e-09 UniRef50_Q2GEY8 Polyribonucleotide nucleotidyltransferase n=2 Ta... 63 6e-09 UniRef50_UPI0000D53087 ribonuclease PH n=1 Tax=Psychroflexus tor... 63 7e-09 UniRef50_C1L2N7 Polyribonucleotide nucleotidyltransferase n=48 T... 62 1e-08 UniRef50_A9TY02 Predicted protein n=3 Tax=Viridiplantae RepID=A9... 62 1e-08 UniRef50_C9RL26 Polyribonucleotide nucleotidyltransferase n=1 Ta... 61 3e-08 UniRef50_Q6CA11 YALI0D06776p n=12 Tax=Saccharomycetales RepID=Q6... 60 4e-08 UniRef50_Q6MDI2 Polyribonucleotide nucleotidyltransferase n=17 T... 60 7e-08 UniRef50_C7DI02 3' exoribonuclease n=1 Tax=Candidatus Micrarchae... 59 9e-08 UniRef50_Q965N3 Putative uncharacterized protein n=2 Tax=Caenorh... 59 1e-07 UniRef50_Q54EU6 Putative uncharacterized protein n=1 Tax=Dictyos... 59 1e-07 UniRef50_Q469M2 Ribosomal RNA-processing protein RRP42 n=5 Tax=A... 59 2e-07 UniRef50_B6K3J3 Exosome complex exonuclease RRP41 n=1 Tax=Schizo... 59 2e-07 UniRef50_UPI0001925525 PREDICTED: similar to predicted protein n... 58 2e-07 UniRef50_A7RQ94 Predicted protein n=3 Tax=Eumetazoa RepID=A7RQ94... 58 3e-07 UniRef50_B1L6N6 3' exoribonuclease n=1 Tax=Candidatus Korarchaeu... 58 3e-07 UniRef50_D1AX54 Polyribonucleotide nucleotidyltransferase n=2 Ta... 58 3e-07 UniRef50_Q9NPD3 Exosome complex exonuclease RRP41 n=11 Tax=Coelo... 57 5e-07 UniRef50_B9KYR9 Polyribonucleotide nucleotidyltransferase n=53 T... 57 6e-07 UniRef50_B5S2C1 Polyribonucleotide nucleotidyltransferase protei... 57 7e-07 UniRef50_Q6PBZ8 Exosc4 protein n=10 Tax=Metazoa RepID=Q6PBZ8_DANRE 57 7e-07 UniRef50_Q3ABA6 Polyribonucleotide nucleotidyltransferase n=111 ... 55 1e-06 UniRef50_D1INE0 Whole genome shotgun sequence of line PN40024, s... 55 1e-06 UniRef50_C5A2B8 Probable exosome complex exonuclease 2 n=20 Tax=... 55 2e-06 UniRef50_C1A3Y1 Polyribonucleotide nucleotidyltransferase n=2 Ta... 55 2e-06 UniRef50_A8PS54 3' exoribonuclease family, domain 2 containing p... 54 3e-06 UniRef50_Q9LX74 AT3G46210 protein n=8 Tax=Embryophyta RepID=Q9LX... 54 3e-06 UniRef50_B8D6B8 Probable exosome complex exonuclease 2 n=1 Tax=D... 54 6e-06 UniRef50_A5VCY9 Polyribonucleotide nucleotidyltransferase n=438 ... 53 7e-06 UniRef50_D0WEI7 Polyribonucleotide nucleotidyltransferase n=1 Ta... 53 9e-06 UniRef50_A9B8G1 Polyribonucleotide nucleotidyltransferase n=38 T... 52 1e-05 UniRef50_B8C7U5 Putative uncharacterized protein (Fragment) n=1 ... 52 2e-05 UniRef50_A8XLU8 Putative uncharacterized protein n=2 Tax=Caenorh... 52 2e-05 UniRef50_C0R0E0 Polyribonucleotide nucleotidyltransferase n=2 Ta... 51 2e-05 UniRef50_C7N5E6 Polyribonucleotide nucleotidyltransferase (Polyn... 51 2e-05 UniRef50_Q1IQ54 Polyribonucleotide nucleotidyltransferase n=96 T... 51 3e-05 UniRef50_Q2GJV5 Polyribonucleotide nucleotidyltransferase n=138 ... 50 4e-05 UniRef50_A9A5D0 3' exoribonuclease n=4 Tax=Thaumarchaeota RepID=... 50 6e-05 UniRef50_C3Z2F7 Putative uncharacterized protein (Fragment) n=4 ... 50 6e-05 UniRef50_B7IE23 Polyribonucleotide nucleotidyltransferase n=3 Ta... 50 6e-05 UniRef50_D0NP71 Exosome complex exonuclease MTR3-like protein n=... 50 7e-05 UniRef50_D2L1T8 Polyribonucleotide nucleotidyltransferase n=1 Ta... 50 7e-05 UniRef50_A7GX79 Polyribonucleotide nucleotidyltransferase n=17 T... 50 8e-05 UniRef50_Q7V606 Polyribonucleotide nucleotidyltransferase n=50 T... 49 9e-05 UniRef50_UPI0000D569CA PREDICTED: similar to exosomal 3-5 exorib... 49 1e-04 UniRef50_B9E1K8 Polyribonucleotide nucleotidyltransferase n=15 T... 49 1e-04 UniRef50_O26778 Probable exosome complex exonuclease 2 n=5 Tax=M... 49 1e-04 UniRef50_B0BXR0 Polyribonucleotide nucleotidyltransferase n=20 T... 49 1e-04 UniRef50_Q1J1D0 Polyribonucleotide nucleotidyltransferase n=6 Ta... 49 1e-04 UniRef50_Q2NEX4 Putative exosome complex, exonuclease 2 subunit ... 49 1e-04 UniRef50_UPI000186CF32 Exosome complex exonuclease RRP43, putati... 49 1e-04 UniRef50_Q84T68 Os03g0854200 protein n=9 Tax=Magnoliophyta RepID... 49 2e-04 UniRef50_A8PFJ3 3' exoribonuclease family, domain 1 containing p... 49 2e-04 UniRef50_UPI00006CFE64 3'''' exoribonuclease family, domain 1 co... 48 2e-04 UniRef50_Q2S1P1 Polyribonucleotide nucleotidyltransferase n=1 Ta... 48 2e-04 UniRef50_Q0AYI2 Polyribonucleotide nucleotidyltransferase n=70 T... 48 2e-04 UniRef50_B5E2A0 Polyribonucleotide nucleotidyltransferase n=202 ... 48 3e-04 UniRef50_C4R4E4 3'-to-5' phosphorolytic exoribonuclease that is ... 48 3e-04 UniRef50_P46948 Exosome complex component SKI6 n=12 Tax=Saccharo... 48 3e-04 UniRef50_UPI00006A4B1C PREDICTED: similar to LOC495942 protein n... 48 3e-04 UniRef50_B3EH06 Polyribonucleotide nucleotidyltransferase n=1 Ta... 48 3e-04 UniRef50_A2RVK7 At4g27490 n=9 Tax=Magnoliophyta RepID=A2RVK7_ARATH 47 4e-04 UniRef50_Q8SYC8 RE67757p n=23 Tax=Coelomata RepID=Q8SYC8_DROME 47 4e-04 UniRef50_B5Y8I4 Polyribonucleotide nucleotidyltransferase n=1 Ta... 47 4e-04 UniRef50_A8MA85 3' exoribonuclease n=1 Tax=Caldivirga maquilinge... 47 4e-04 UniRef50_Q1G2Y1 Chloroplast polyribonucleotide phosphorylase n=5... 47 5e-04 UniRef50_Q7UR95 Polyribonucleotide nucleotidyltransferase n=5 Ta... 47 5e-04 UniRef50_Q6P0I8 Exosome complex exonuclease MTR3 n=5 Tax=Euteleo... 47 5e-04 UniRef50_A8NCK3 Putative uncharacterized protein n=2 Tax=Agarica... 47 6e-04 UniRef50_B7GAV6 Predicted protein n=2 Tax=Bacillariophyta RepID=... 46 8e-04 UniRef50_A8PXC4 Putative uncharacterized protein n=1 Tax=Malasse... 46 8e-04 UniRef50_Q0SM46 Polyribonucleotide nucleotidyltransferase n=24 T... 46 9e-04 UniRef50_C1M111 Exosome complex exonuclease rrp42 (Ribosomal rna... 46 0.001 UniRef50_Q8GZQ3 Polynucleotide phosphorylase n=19 Tax=cellular o... 46 0.001 UniRef50_Q9YC05 Probable exosome complex exonuclease 2 n=4 Tax=D... 46 0.001 UniRef50_Q72ER6 Polyribonucleotide nucleotidyltransferase n=17 T... 46 0.001 UniRef50_C3XH48 Polyribonucleotide nucleotidyltransferase n=1 Ta... 45 0.001 UniRef50_A6DU91 Polynucleotide phosphorylase/polyadenylase n=1 T... 45 0.001 UniRef50_UPI00005A29C6 PREDICTED: similar to Exosome complex exo... 45 0.001 UniRef50_UPI000190509B ribonuclease PH n=1 Tax=Rhizobium etli GR... 45 0.002 UniRef50_UPI000169499B ribonuclease PH n=1 Tax=Paenibacillus lar... 45 0.002 UniRef50_B3EMN6 Polyribonucleotide nucleotidyltransferase n=12 T... 45 0.002 UniRef50_B6AK41 3' exoribonuclease family protein, putative n=1 ... 45 0.002 UniRef50_O42872 Exosome complex component ski6 n=1 Tax=Schizosac... 45 0.002 UniRef50_D1Y1M0 Polyribonucleotide nucleotidyltransferase n=1 Ta... 45 0.002 UniRef50_C4LJ74 Polyribonucleotide nucleotidyltransferase n=28 T... 44 0.003 UniRef50_UPI000180CDA2 PREDICTED: similar to Exosome complex exo... 44 0.004 UniRef50_D1PLM8 Polyribonucleotide nucleotidyltransferase n=1 Ta... 44 0.004 UniRef50_Q8TCS8 Polyribonucleotide nucleotidyltransferase 1, mit... 44 0.005 UniRef50_D0NT61 Exosome complex exonuclease RRP41-like protein n... 44 0.005 UniRef50_C7LKG2 Putative polyribonucleotide nucleotidyltransfera... 44 0.005 UniRef50_C9KKD1 Polyribonucleotide nucleotidyltransferase n=1 Ta... 44 0.006 UniRef50_UPI0001793368 PREDICTED: similar to Exosome complex exo... 44 0.006 UniRef50_B0ERA1 Exosome complex exonuclease RRP41, putative n=2 ... 44 0.006 UniRef50_UPI000186F240 conserved hypothetical protein n=1 Tax=Pe... 44 0.006 UniRef50_A1RXQ5 Ribosomal RNA-processing protein RRP42 n=1 Tax=T... 43 0.007 UniRef50_B7ATJ6 Putative uncharacterized protein n=2 Tax=Bacteri... 43 0.007 UniRef50_C7MNH4 Polyribonucleotide nucleotidyltransferase (Polyn... 43 0.008 UniRef50_A8F725 Polyribonucleotide nucleotidyltransferase n=21 T... 43 0.010 UniRef50_A1UU54 Polyribonucleotide nucleotidyltransferase n=155 ... 42 0.012 UniRef50_UPI00015B5B6C PREDICTED: similar to ENSANGP00000009222 ... 42 0.013 UniRef50_Q5TMQ4 AGAP011906-PA n=4 Tax=Culicidae RepID=Q5TMQ4_ANOGA 42 0.013 UniRef50_A0D7C7 Chromosome undetermined scaffold_4, whole genome... 42 0.014 UniRef50_Q0IT44 Os11g0311300 protein (Fragment) n=11 Tax=Magnoli... 42 0.016 UniRef50_A9NGE2 Polyribonucleotide nucleotidyltransferase n=5 Ta... 42 0.018 UniRef50_A8Z660 Polyribonucleotide nucleotidyltransferase n=4 Ta... 41 0.032 UniRef50_C1E4G7 Predicted protein n=1 Tax=Micromonas sp. RCC299 ... 41 0.039 UniRef50_B3S9X0 Putative uncharacterized protein n=1 Tax=Trichop... 41 0.039 UniRef50_C1TQM6 Polyribonucleotide nucleotidyltransferase (Polyn... 40 0.043 UniRef50_B3QZG1 Polyribonucleotide nucleotidyltransferase n=1 Ta... 40 0.044 UniRef50_B3TBC7 Putative 3' exoribonuclease family, domain 1 n=1... 40 0.054 UniRef50_A5URV5 Polyribonucleotide nucleotidyltransferase n=11 T... 40 0.059 UniRef50_B9MZ65 Predicted protein n=6 Tax=Magnoliophyta RepID=B9... 40 0.060 UniRef50_B7G0I4 Predicted protein n=2 Tax=Bacillariophyta RepID=... 40 0.062 UniRef50_C1BRT2 Exosome complex exonuclease RRP43 n=1 Tax=Caligu... 40 0.063 UniRef50_Q8ZVN0 Probable exosome complex exonuclease 2 n=5 Tax=T... 40 0.074 UniRef50_A7RP27 Predicted protein (Fragment) n=1 Tax=Nematostell... 40 0.082 UniRef50_Q4P5R4 Putative uncharacterized protein n=1 Tax=Ustilag... 40 0.082 UniRef50_B7GDQ5 Predicted protein (Fragment) n=1 Tax=Phaeodactyl... 40 0.088 >UniRef50_C1DI48 Ribonuclease PH n=157 Tax=Bacteria RepID=RNPH_AZOVD Length = 239 Score = 323 bits (827), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 156/220 (70%), Positives = 186/220 (84%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 RP+GR+ +Q+RP+ +TRNYT+HAEGSVLVEFGDT+V+CT S E GVPRFLKGQG+GW+TA Sbjct: 3 RPSGRAPHQLRPIRITRNYTRHAEGSVLVEFGDTRVICTVSAEAGVPRFLKGQGKGWLTA 62 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQA 121 EYGMLPR+T R AREA++G+QGGRT+EIQRLI R+LRAA+D+ LGE T+ +DCDV+QA Sbjct: 63 EYGMLPRATGERMAREASRGRQGGRTLEIQRLIGRSLRAALDMSKLGENTLYVDCDVIQA 122 Query: 122 DGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDS 181 DGGTRTASITGA VALVDAL L + G LK +P+K MVAAVSVGI GE + DL+Y EDS Sbjct: 123 DGGTRTASITGAMVALVDALAVLKKRGALKGDPLKQMVAAVSVGIYQGEPILDLDYPEDS 182 Query: 182 AAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALA 221 AETD+NVVMT+ G IEVQGTAEGEPF EEL +LALA Sbjct: 183 DAETDLNVVMTDAGGFIEVQGTAEGEPFQPEELNAMLALA 222 >UniRef50_Q2P6N2 Ribonuclease PH n=933 Tax=cellular organisms RepID=RNPH_XANOM Length = 241 Score = 310 bits (793), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 152/220 (69%), Positives = 180/220 (81%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 RP+GR+ +Q+RPV + R +T+HAEGSVLV FGDT VLCTAS+E VP FL+G+G+GW+TA Sbjct: 5 RPSGRTADQLRPVRIERAFTRHAEGSVLVSFGDTHVLCTASVENRVPNFLRGKGEGWVTA 64 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQA 121 EYGMLPRSTHTR+ REAA+GKQGGRT+EIQRLI RALRA VD ALGE TITLDCDVLQA Sbjct: 65 EYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCDVLQA 124 Query: 122 DGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDS 181 DGGTRTA+ITGA VAL DA+ L++ G++K +P+ G VAAVSVGI GE V DL+Y EDS Sbjct: 125 DGGTRTAAITGAYVALADAVNLLLKRGEIKKHPLIGAVAAVSVGIYRGEPVLDLDYPEDS 184 Query: 182 AAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALA 221 +TDMNVVM + G IE+QGTAEG F +EL LLALA Sbjct: 185 DCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELNALLALA 224 >UniRef50_B1I4W9 Ribonuclease PH n=67 Tax=Bacteria RepID=RNPH_DESAP Length = 261 Score = 269 bits (688), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 136/221 (61%), Positives = 164/221 (74%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +R GR+ Q+RPV +TR+Y K+AEGS L+E GDT+V+CTASI+ VP FLKG G+GW+T Sbjct: 2 IRVDGRAPAQMRPVYITRHYNKYAEGSALIEVGDTRVICTASIDNRVPTFLKGAGKGWVT 61 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 AE+GMLPR+T R RE+ KG GGR++EIQRLI R+LRA VDL ALGE T+ LDCDV+Q Sbjct: 62 AEFGMLPRATGVRGIRESVKGHPGGRSLEIQRLIGRSLRAVVDLPALGERTVILDCDVIQ 121 Query: 121 ADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVED 180 ADGGTRTA+ITG VALVDA+Q LV G P+ VAA SVG+ GEAV DL + ED Sbjct: 122 ADGGTRTAAITGGFVALVDAMQTLVTEGVTPRLPVLDYVAATSVGLFEGEAVLDLCFAED 181 Query: 181 SAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALA 221 SAAE D NVVMT GR +EVQGT EG F ++ LL LA Sbjct: 182 SAAEVDFNVVMTGTGRFVEVQGTGEGTTFERADVDRLLDLA 222 >UniRef50_A8EY33 Ribonuclease PH n=14 Tax=Rickettsieae RepID=RNPH_RICCK Length = 239 Score = 258 bits (660), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 123/222 (55%), Positives = 162/222 (72%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 MR +GR +NQ+RP++L + +AEGS L++ G T V+C+A+ E VP FL+GQ QGW+T Sbjct: 1 MRQSGRKSNQLRPISLELSPLVNAEGSCLIKIGKTHVICSATCETTVPPFLRGQNQGWVT 60 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 AEYGMLP ST R REA GKQGGRT EIQRLI RA+R +DLK LGE I +DCDV+ Sbjct: 61 AEYGMLPSSTSQRIKREAVLGKQGGRTQEIQRLIGRAMRCVIDLKKLGERQIIIDCDVIN 120 Query: 121 ADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVED 180 ADGGTRTA+ITG+ +AL A++ L++ LK NP+ +AA+S GI GE + DL+Y+ED Sbjct: 121 ADGGTRTAAITGSYIALHLAIRLLMKKSILKVNPLISQIAAISCGIYKGETILDLDYLED 180 Query: 181 SAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALAR 222 S AE D+N V +G +IEVQGTAE +PF+ E+ L +L LA+ Sbjct: 181 SDAEVDINFVFAGNGNLIEVQGTAEKKPFSEEQFLAMLKLAK 222 >UniRef50_C1RJ73 RNAse PH n=1 Tax=Cellulomonas flavigena DSM 20109 RepID=C1RJ73_9CELL Length = 328 Score = 257 bits (657), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 135/226 (59%), Positives = 165/226 (73%), Gaps = 8/226 (3%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +R GR +++RPVT+TR + EGSVLVEFG TKVLC AS EGVPR+ KG G+GW+T Sbjct: 72 VRKDGRRADELRPVTITRRFLDAGEGSVLVEFGGTKVLCVASFTEGVPRWRKGSGEGWVT 131 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 AEY MLPR+T++R+ RE+ +GK GGRT EI RL+ R+LRA VD+ ALGE TI LDCDVLQ Sbjct: 132 AEYAMLPRATNSRSDRESVRGKVGGRTHEISRLVGRSLRAVVDVAALGENTIVLDCDVLQ 191 Query: 121 ADGGTRTASITGACVALVDAL-----QKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDL 175 ADGGTRTA+ITGA VAL DA+ ++LV+ G+ ++ VAA+SVG+V+G V DL Sbjct: 192 ADGGTRTAAITGAYVALADAVAWATTKRLVKPGR---TVLRDSVAAISVGVVDGVPVLDL 248 Query: 176 EYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALA 221 Y ED AETDMNVV T G +EVQGTAE PF EL LL LA Sbjct: 249 PYEEDVRAETDMNVVTTGAGAFVEVQGTAEHAPFDRAELDALLDLA 294 >UniRef50_D0DA55 Ribonuclease PH n=2 Tax=Rhodobacteraceae RepID=D0DA55_9RHOB Length = 296 Score = 257 bits (656), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 129/221 (58%), Positives = 165/221 (74%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 MRP+GR +++R V++ TKHAEGS L++ GDT+V+CTAS+EE VP F+KG G GW+T Sbjct: 60 MRPSGRHLSEMRTVSIETGITKHAEGSCLIKVGDTQVICTASLEERVPPFIKGSGLGWVT 119 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 AEYGMLPRST +R REA GKQGGRT+EIQRLI R+LRA VD ALGE IT+DCDV+Q Sbjct: 120 AEYGMLPRSTGSRMRREATSGKQGGRTVEIQRLIGRSLRAGVDRVALGERQITIDCDVIQ 179 Query: 121 ADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVED 180 ADGGTR ASITG VAL A+ KL++ G +KT+P+ VAAVS GI G+ + DL+Y ED Sbjct: 180 ADGGTRCASITGGWVALRLAVNKLMKAGDVKTDPLVSPVAAVSCGIYAGQPILDLDYPED 239 Query: 181 SAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALA 221 S A D N ++ DG++IEVQ +AEG F+ ++ L+ LA Sbjct: 240 SEAGVDGNFILRGDGQLIEVQMSAEGATFSRAQMSELMDLA 280 >UniRef50_C9KNG5 tRNA nucleotidyltransferase n=2 Tax=Firmicutes RepID=C9KNG5_9FIRM Length = 248 Score = 256 bits (655), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 131/220 (59%), Positives = 162/220 (73%), Gaps = 3/220 (1%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 RP R+ + +RP + R++ K+ GSVL+E G+TKV+C ASIE+ VP FL+G G+GWI A Sbjct: 3 RPDRRTADALRPYEMHRHFQKYPAGSVLIEMGNTKVICAASIEDRVPFFLRGTGEGWIAA 62 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQA 121 EY +LP +T TR REA +GKQ GRT EI+RLI R+LR+ VD KALGE TI +DCDV+QA Sbjct: 63 EYSLLPSATETRTQREAVRGKQSGRTQEIERLIGRSLRSVVDTKALGERTIMIDCDVIQA 122 Query: 122 DGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVN-GEAVCDLEYVED 180 DGGTRTASITGA VALV+A E GK+ P+K ++A+SVG+ + G + DL Y ED Sbjct: 123 DGGTRTASITGAFVALVEACASFYEKGKI--FPVKDFLSAISVGVSHEGVPILDLCYEED 180 Query: 181 SAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLAL 220 S A DMNVVMT GR +EVQGT EG PFTHEEL LLAL Sbjct: 181 SRAIVDMNVVMTGVGRFVEVQGTGEGRPFTHEELGELLAL 220 >UniRef50_A1KID0 Ribonuclease PH n=18 Tax=Bacteria RepID=RNPH_MYCBP Length = 259 Score = 255 bits (652), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 130/228 (57%), Positives = 163/228 (71%), Gaps = 1/228 (0%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR ++++RPV +TR +T++ GSVL+EFG TKVLCTAS+ EGVPR+ K G GW+TA Sbjct: 4 REDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGWLTA 63 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQA 121 EY MLP +TH+R+ RE+ +G+ GRT EI RLI R+LRA +DL ALGE TI +DCDVLQA Sbjct: 64 EYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQA 123 Query: 122 DGGTRTASITGACVALVDALQKLVENGKLK-TNPMKGMVAAVSVGIVNGEAVCDLEYVED 180 DGGTRTA+ITGA VAL DA+ L GKL P+ +AAVSVG+V+G DL Y ED Sbjct: 124 DGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEED 183 Query: 181 SAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 S AE DMNVV T+ G ++E+QGT EG F L LL +A G + L Sbjct: 184 SRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTL 231 >UniRef50_B9MQJ8 Ribonuclease PH n=58 Tax=Bacteria RepID=RNPH_ANATD Length = 258 Score = 255 bits (652), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 122/222 (54%), Positives = 160/222 (72%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 MR R+ N++RP+ +TRN+ K+AEGS L+E G+TKV+ TA+I++ VP F KG G+GWIT Sbjct: 1 MRQDQRAYNEIRPIKITRNFIKYAEGSCLIEMGNTKVIVTATIDDKVPPFKKGSGEGWIT 60 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 AEY MLPR+T RN R+ K + GR+ EIQRLI RALRA ++ KALGE I +DCDV+Q Sbjct: 61 AEYSMLPRATQQRNVRDINKLRLSGRSHEIQRLIGRALRAGINFKALGERVIIIDCDVIQ 120 Query: 121 ADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVED 180 ADGGTRTASITG +A+ DA +KL + ++ P+ VAAVSVGI +G + DL + ED Sbjct: 121 ADGGTRTASITGGFIAMFDACKKLYDEKIIENFPVTDFVAAVSVGICDGVEMLDLCFEED 180 Query: 181 SAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALAR 222 S A DMN+VM + G IE+QGTAEG PF+ E+ LL L + Sbjct: 181 SKAAVDMNLVMNDKGEFIEIQGTAEGAPFSWEQFQKLLELGK 222 >UniRef50_Q2JKT3 Ribonuclease PH n=22 Tax=Bacteria RepID=RNPH_SYNJB Length = 244 Score = 245 bits (626), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 127/225 (56%), Positives = 159/225 (70%), Gaps = 5/225 (2%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 RP R+ Q+RPV+ R++T++A GSVLV+FG T VLCTAS+ E VP FL+ GQGW+TA Sbjct: 5 RPDNRTAAQLRPVSFERHFTRYAPGSVLVKFGHTHVLCTASVAEEVPPFLQNTGQGWLTA 64 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQA 121 EY MLP +T R RE K GRT EIQRLI R+LRAA+D + LG TIT+D DVLQA Sbjct: 65 EYRMLPGATQQRQPREML--KLSGRTAEIQRLIGRSLRAALDFRKLGSRTITVDADVLQA 122 Query: 122 DGGTRTASITGACVALVDALQKLVENGKL---KTNPMKGMVAAVSVGIVNGEAVCDLEYV 178 DGGTRTA+ITG VAL DA+ L + G L + +P++ VAA+SVGIV GE + DL Y Sbjct: 123 DGGTRTAAITGGYVALHDAITWLYKQGALDPAQGSPLRQQVAALSVGIVQGEVLVDLCYE 182 Query: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARG 223 EDS AE DMN+VM E G IE+QGTAE F+ +LL +L +A+ Sbjct: 183 EDSQAEVDMNIVMNEQGSFIEIQGTAEAACFSRPQLLQMLEMAQA 227 >UniRef50_Q83HF6 Ribonuclease PH n=17 Tax=Bacteria RepID=RNPH_TROW8 Length = 247 Score = 236 bits (602), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 113/222 (50%), Positives = 156/222 (70%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +R R+++++RPV + R + +AEGS L+ FG+T+VLC A+ + GVP FL+GQ GWIT Sbjct: 11 LRKNSRAHDEIRPVKIIRGWNIYAEGSALIAFGNTRVLCNATFQRGVPPFLRGQRSGWIT 70 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 AEY MLPRS R+ RE+ KGK GR+ EI RLI R++RA +D AL E TI LDCDVLQ Sbjct: 71 AEYAMLPRSGTERSDRESVKGKISGRSHEISRLIGRSMRAILDRYALEENTIILDCDVLQ 130 Query: 121 ADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVED 180 ADGGTRTA+ITG+ +AL DAL L +P+ V+AVSVG+V + DL+Y ED Sbjct: 131 ADGGTRTAAITGSYIALYDALVWAKNQKILSKHPLTDSVSAVSVGLVGDQIFLDLDYSED 190 Query: 181 SAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALAR 222 S A+ D+N+V T G+++E+QGTAE PF++ + ++ LA+ Sbjct: 191 SNAQADINLVFTGSGKLVEIQGTAEKSPFSYGQFEQMMELAK 232 >UniRef50_B2UNC2 Ribonuclease PH n=3 Tax=Verrucomicrobia RepID=B2UNC2_AKKM8 Length = 270 Score = 236 bits (602), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 125/223 (56%), Positives = 155/223 (69%), Gaps = 2/223 (0%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQ--GWI 59 R R +Q+RP++ +A SVLV FG TKV+C +IEE VPR++K Q GW+ Sbjct: 12 RQDKRLVDQLRPISFETGIAPNATASVLVTFGRTKVICAVTIEEDVPRWMKVQRVEGGWL 71 Query: 60 TAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVL 119 TAEY MLP ST R R+ GK GR+ EIQRLI R+LRAAVDL +G+ TI +DCDVL Sbjct: 72 TAEYSMLPYSTLDRKRRDITAGKLDGRSSEIQRLIGRSLRAAVDLGKIGQRTIWVDCDVL 131 Query: 120 QADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVE 179 QADGGTRTASITGA VAL A+ KLV GKL +PMK +V+AVSVGI+ GEA+ DL YVE Sbjct: 132 QADGGTRTASITGASVALAIAVNKLVAEGKLAESPMKRLVSAVSVGILEGEALLDLCYVE 191 Query: 180 DSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALAR 222 D AE DMN+VMT+ G +EVQG+ E FT +++ +L L R Sbjct: 192 DKDAEVDMNLVMTDQGEFVEVQGSGEEAVFTADQMNRMLELGR 234 >UniRef50_C2D8L5 tRNA nucleotidyltransferase n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D8L5_9ACTN Length = 272 Score = 231 bits (589), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 117/217 (53%), Positives = 154/217 (70%), Gaps = 2/217 (0%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GRS + RP TL R K+A+GS L+ GDT+VLC+A++E+ +P + K GW++A Sbjct: 38 RSYGRSAFEARPCTLERQVMKYADGSCLITCGDTRVLCSATVEDTLPTWRKLSHLGWVSA 97 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQA 121 EY MLP S R RE KG++G R+MEI+RLI R+LR+ VD LGE TIT+DCDVLQA Sbjct: 98 EYAMLPASAKRRTPREY-KGRKG-RSMEIERLIGRSLRSVVDFSKLGEHTITIDCDVLQA 155 Query: 122 DGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDS 181 DGGTRTASI GA VAL DA +K+VE K+ P+ G VAA+S+GIV+GE + DL+Y EDS Sbjct: 156 DGGTRTASIVGAWVALHDACRKMVEADKIARCPLTGQVAAISMGIVHGELLVDLDYPEDS 215 Query: 182 AAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILL 218 A+ D+NVVM +DG ++E+QGT E + +L LL Sbjct: 216 NADVDLNVVMRDDGGLVEIQGTGERATLSRHDLNALL 252 >UniRef50_D1CFI4 Ribonuclease PH n=3 Tax=Bacteria RepID=D1CFI4_THET1 Length = 245 Score = 230 bits (587), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 123/221 (55%), Positives = 151/221 (68%), Gaps = 3/221 (1%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +R GR N++RP ++ GS +++ G TKVLC ASI+EGVP+FL+G GQGW+T Sbjct: 6 IRVDGRKPNELRPHSIEIYPLAFPPGSAIIQCGVTKVLCAASIQEGVPKFLEGTGQGWLT 65 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 AEY MLP ST TR RE+ G+ GRT EIQRLI R+LRAAV L +GE TI +DCDVLQ Sbjct: 66 AEYSMLPASTQTRTPRESHTGRLQGRTQEIQRLIGRSLRAAVKLDQIGEITIIVDCDVLQ 125 Query: 121 ADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVED 180 ADGGTRTASITG VA V AL+K+ + + VAAVSVGIVNG + DL Y ED Sbjct: 126 ADGGTRTASITGGYVATVLALRKIFPD---TYRDLVSPVAAVSVGIVNGTPMLDLNYAED 182 Query: 181 SAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALA 221 S A+TD+NVV G IE+Q TAE F+ EEL +L+LA Sbjct: 183 STADTDLNVVKNHLGDYIEIQATAERVSFSREELDAMLSLA 223 >UniRef50_B7KB81 Ribonuclease PH n=7 Tax=Bacteria RepID=RNPH_CYAP7 Length = 242 Score = 226 bits (577), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 118/221 (53%), Positives = 154/221 (69%), Gaps = 2/221 (0%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 RP R +Q+RP+ NY++ GSVL G+T+VLCTA+I+ VP+FL G+GW+TA Sbjct: 5 RPDSRQPDQLRPILFETNYSRFRVGSVLAHCGETRVLCTATIQPNVPKFLLNSGKGWLTA 64 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQA 121 EY MLP +T R +RE + GRT EIQRLI R+LRA +D + LGE TI +D DVLQA Sbjct: 65 EYRMLPGATPERQSRELMQ--LSGRTQEIQRLIGRSLRACLDFERLGERTIIIDTDVLQA 122 Query: 122 DGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDS 181 D GTRT +ITG +AL A++KL+E G+L+ +P+K VAAVSVG++ GE DL Y ED+ Sbjct: 123 DAGTRTTAITGGYIALGLAIKKLLEVGELQESPLKLPVAAVSVGLIEGEPFLDLNYAEDT 182 Query: 182 AAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALAR 222 AAE D NVVMT + +IEVQGTAE F+ +L LL LA+ Sbjct: 183 AAEVDFNVVMTGNLDLIEVQGTAESGSFSRLQLNQLLDLAQ 223 >UniRef50_Q7U9I1 Ribonuclease PH n=14 Tax=Cyanobacteria RepID=RNPH_SYNPX Length = 249 Score = 216 bits (550), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 111/220 (50%), Positives = 149/220 (67%), Gaps = 2/220 (0%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR ++RP ++ + A S++V G T VLC+ S+EE VPR+ +G G GW++A Sbjct: 8 RADGRGATELRPFSVDWDPMSFALSSLIVRTGRTAVLCSVSLEEDVPRWRRGNGCGWLSA 67 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQA 121 EY +LP ST R +RE K GRT EIQRLI R+LRA +D+ ALGE T+ +DCDV+QA Sbjct: 68 EYRLLPGSTPQRQSRELMK--LSGRTQEIQRLIGRSLRAVLDMDALGERTLLIDCDVIQA 125 Query: 122 DGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDS 181 D GTRTASITGA +AL A L G L +P++ +AAVSVG+++G + DL+Y EDS Sbjct: 126 DAGTRTASITGAWIALRRACDLLRSQGVLTQDPIRQQLAAVSVGLIDGTPLLDLDYSEDS 185 Query: 182 AAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALA 221 A+ D+NVV DGR++E+QGTAE PF+ EL +L LA Sbjct: 186 RADVDLNVVTAGDGRLLELQGTAEQAPFSRSELDAMLNLA 225 >UniRef50_A9FGR1 Ribonuclease PH n=2 Tax=Bacteria RepID=A9FGR1_SORC5 Length = 257 Score = 213 bits (542), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 120/223 (53%), Positives = 146/223 (65%), Gaps = 3/223 (1%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 RP GR+ + RPV + + ++AEGSVL G T VLCTAS+E VP ++ G+G GW+TA Sbjct: 3 RPDGRALDVHRPVEMILGFHRNAEGSVLYRAGRTVVLCTASVEPTVPAWMMGKGAGWLTA 62 Query: 62 EYGMLPRSTHTRNAREAAKGK-QGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 EY M PRS+ R +GK GRT EIQRLI RALRAA+DLK LGE TI +DCDVL+ Sbjct: 63 EYQMHPRSSPARREPRDGRGKAPSGRTQEIQRLIGRALRAAIDLKHLGEQTIAIDCDVLE 122 Query: 121 ADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVED 180 ADGGTRTASIT VAL AL ++ G L+ ++ VAA+SVG + G DL Y ED Sbjct: 123 ADGGTRTASITAGFVALALALDRMRAAGSLEAPVLRDQVAAISVGHLPGGLALDLVYTED 182 Query: 181 SAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEEL--LILLALA 221 S+A DMNVV T G I+EVQ TAE E EL + LALA Sbjct: 183 SSARVDMNVVATAVGSIVEVQATAEDEAIPRAELDRMTDLALA 225 >UniRef50_C1CZJ0 Putative tRNA nucleotidyltransferase (Phosphate-dependent exonuclease, Ribonuclease PH, RNase PH) n=1 Tax=Deinococcus deserti VCD115 RepID=C1CZJ0_DEIDV Length = 249 Score = 186 bits (472), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 101/214 (47%), Positives = 133/214 (62%), Gaps = 2/214 (0%) Query: 5 GRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYG 64 GR + RPV++ R HA GS + G T++L T ++E+ ++G+ +GW+TAEY Sbjct: 14 GRGLLEPRPVSVKRGVNPHAPGSAHLIMGRTEILATVTLEDKPAPHMRGKKEGWLTAEYS 73 Query: 65 MLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGG 124 MLPR+T+ R ARE + Q GR EIQRL+ RALRA+VDLK TI +DCDVL ADGG Sbjct: 74 MLPRATNDRQARE--RNLQNGRRHEIQRLLGRALRASVDLKYFRNQTIYVDCDVLVADGG 131 Query: 125 TRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAE 184 TR ASI AL D +L+ +G+L P+ V A+SVG+V E DL+Y ED A Sbjct: 132 TRVASILAGHAALHDFCDRLINSGQLSEWPLTHKVGAISVGLVGEEVRVDLDYAEDKVAR 191 Query: 185 TDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILL 218 D+NVV T+ G +IEVQG AE P + E LL Sbjct: 192 ADLNVVATDTGLVIEVQGGAEEGPISLAEYSQLL 225 >UniRef50_C1XM20 Ribonuclease PH n=2 Tax=Meiothermus RepID=C1XM20_MEIRU Length = 238 Score = 186 bits (471), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 101/208 (48%), Positives = 132/208 (63%), Gaps = 5/208 (2%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR+ ++RP+TL Y +AEGS LVE G TKVL S+ +GVPR + G+ +GW+ A Sbjct: 3 RKDGRAAQELRPLTLRMGYVHYAEGSALVELGHTKVLVNVSLTDGVPRHVSGR-EGWLMA 61 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQA 121 EY +LPRST R RE + K GRT EIQR + RA RAA+DL L T+ +D DV+QA Sbjct: 62 EYNLLPRSTKERKERE--RQKISGRTAEIQRFLGRAFRAALDLSLLPNKTVVIDADVIQA 119 Query: 122 DGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEA-VCDLEYVED 180 DGGTR AS+ G AL A+ +LV GKL P+ AAVSVG ++ ++ + DL +ED Sbjct: 120 DGGTRVASLLGGYAALHMAMDRLVNQGKLDEWPLTEF-AAVSVGWMSDDSLLLDLTQIED 178 Query: 181 SAAETDMNVVMTEDGRIIEVQGTAEGEP 208 A D+ VV T+ G IIE+ G EG P Sbjct: 179 ENAWADLTVVATQSGDIIELHGAGEGRP 206 >UniRef50_Q9RU11 Ribonuclease PH n=2 Tax=Deinococcus RepID=RNPH_DEIRA Length = 246 Score = 180 bits (457), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 94/215 (43%), Positives = 134/215 (62%), Gaps = 2/215 (0%) Query: 5 GRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYG 64 GR RPV++ R HA GS ++ G T++L T ++++ ++G+ +GW+TAEY Sbjct: 11 GRDALTPRPVSVQRGVNPHAPGSAHLKMGRTEILATVTLDDKPAPHMRGKKEGWLTAEYS 70 Query: 65 MLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGG 124 MLPRST R ARE + Q GR EIQRL+ RALR+++DL+ T+ +DCDVL ADGG Sbjct: 71 MLPRSTTDRQARE--RNLQNGRRHEIQRLLGRALRSSMDLRPFKNQTLYVDCDVLVADGG 128 Query: 125 TRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAE 184 TR AS+ AL D +L+ +G+L P+ V A+SVG++ E DL+Y ED A Sbjct: 129 TRVASVLAGHAALHDFCDRLINSGQLSEWPIVHNVGAISVGLIGDELRVDLDYEEDKVAR 188 Query: 185 TDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLA 219 D+NV+ T+ G ++EVQG AE P T +E LL+ Sbjct: 189 ADLNVIATDTGLLVEVQGGAELGPITVDEYTRLLS 223 >UniRef50_A2BKC0 Probable exosome complex exonuclease 1 n=32 Tax=Archaea RepID=ECX1_HYPBU Length = 255 Score = 102 bits (253), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 76/226 (33%), Positives = 113/226 (50%), Gaps = 25/226 (11%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTAS-IEEGVPRFLKGQGQGWI 59 +R GR Q+RP+ + +A+GS LVE+G T+V+ E PR + + I Sbjct: 24 IRHDGRLPEQLRPIRMEVGVLSNADGSALVEYGGTRVIAAVYGPREAHPRHVALPDRAII 83 Query: 60 TAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVL 119 Y M P ST R + R +E+ ++I AL A V + I + +VL Sbjct: 84 RCRYHMAPFSTAERKTPAPTR-----REVELSKVIREALEAVVISELYPRTAIDVYMEVL 138 Query: 120 QADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVE 179 Q+DGGTRTA+IT A +AL DA M+ +VA V+VG V+G V D++ +E Sbjct: 139 QSDGGTRTAAITAASLALADA-----------GIAMRDLVAGVAVGKVDGVLVLDIDEIE 187 Query: 180 DSAAETDMNVVMT---EDGRIIEVQGTAEGEPFTHEELLILLALAR 222 D+ AE DM V M + ++++ G TH+E + L LAR Sbjct: 188 DNYAEADMPVAMAPSLDKVLLLQLNGV-----LTHDEFVKALELAR 228 >UniRef50_Q6L223 Ribonuclease PH n=1 Tax=Picrophilus torridus RepID=Q6L223_PICTO Length = 239 Score = 100 bits (248), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 63/202 (31%), Positives = 104/202 (51%), Gaps = 17/202 (8%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +R GR+ N++RP+ +T +A+GS +E+G K++ + E P+ + + + Sbjct: 12 LRLDGRAFNEMRPIRITTGVVDNADGSAYIEWGANKIVVAVYVREAYPKHAQNIDKAIVK 71 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 A Y M S R + RTMEI +LI+ AL +A+ ++ L I + +VL+ Sbjct: 72 ARYNMAGFSVEERK-----RPGPDRRTMEISKLISEALESAIMVERLPRAEIDVYIEVLE 126 Query: 121 ADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVED 180 AD GTR AS+T A VA+ DA PMK + + G NG+ V DL ED Sbjct: 127 ADAGTRIASLTAASVAVADA-----------GIPMKDLPVGCTAGKANGKVVLDLSKDED 175 Query: 181 SAAETDMNV-VMTEDGRIIEVQ 201 + + D+ + ++ + G+II +Q Sbjct: 176 NYGDADIPMAILPKSGKIILLQ 197 >UniRef50_UPI000038E13A exosome complex exonuclease Rrp41 n=1 Tax=Ferroplasma acidarmanus fer1 RepID=UPI000038E13A Length = 240 Score = 96.3 bits (238), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 63/225 (28%), Positives = 111/225 (49%), Gaps = 19/225 (8%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +R GRS N++RP+ + + A+GS +E+G K++ + E P+ + + + Sbjct: 13 LRLDGRSLNEMRPIKIQTGVVERADGSAFIEWGANKIIVAVYVREAYPKHAQNIDRAIVK 72 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 A Y M S R + RTMEI ++++ AL +A+ L+ L I + VL+ Sbjct: 73 ARYNMSGYSVEERK-----RPGPDRRTMEISKVVSEALSSAIVLEKLPRAEIDVFIQVLE 127 Query: 121 ADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVED 180 AD GTR AS+T + VA+ DA PM+ +V + G +G+ V DL ED Sbjct: 128 ADAGTRIASLTASSVAVADA-----------GVPMRDLVVGCTAGKADGKIVLDLSKDED 176 Query: 181 SAAETDMNV-VMTEDGRIIEVQ--GTAEGEPFTHEELLILLALAR 222 + + D+ + ++ G+++ +Q G E F +++ A+ R Sbjct: 177 NFGQADIPMAILPRTGKVVLLQLDGDVTEEEFNEATSMMMDAMPR 221 >UniRef50_B6YSI2 Probable exosome complex exonuclease 1 n=33 Tax=Archaea RepID=ECX1_THEON Length = 249 Score = 92.4 bits (228), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 63/188 (33%), Positives = 91/188 (48%), Gaps = 17/188 (9%) Query: 5 GRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTA-SIEEGVPRFLKGQGQGWITAEY 63 GR ++RP+ + K+A+GS VE+G K+L E P+ L+ + + Y Sbjct: 20 GRKKYELRPIKMEVGVLKNADGSAYVEWGKNKILAAVYGPREIHPKHLQRPDRAILRVRY 79 Query: 64 GMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADG 123 M P S R K R++EI ++I AL A+ L+ I + +VLQAD Sbjct: 80 NMAPFSVEERK-----KPGPDRRSVEISKVIRGALEPALILEMFPRTAIDIFIEVLQADA 134 Query: 124 GTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAA 183 GTR A IT A +AL DA PM+ +VAA + G + GE V DL ED+ Sbjct: 135 GTRVAGITAASLALADA-----------GIPMRDLVAACAAGKIEGEIVLDLNKEEDNYG 183 Query: 184 ETDMNVVM 191 E D+ V + Sbjct: 184 EADVPVAI 191 >UniRef50_A9A5C9 Probable exosome complex exonuclease 1 n=3 Tax=Archaea RepID=ECX1_NITMS Length = 244 Score = 89.0 bits (219), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 62/189 (32%), Positives = 92/189 (48%), Gaps = 17/189 (8%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGV-PRFLKGQGQGWIT 60 R GR+ ++ R + + K+A+GS +EFGD K+L V P+ + G + Sbjct: 17 RCDGRTVDEPRRIMIKAGGLKNADGSSYIEFGDNKILVGVFGPRDVHPKHMSDTDTGILR 76 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 Y M P S R ++ R +EI ++I AL AV L+ + + +VLQ Sbjct: 77 VRYHMEPFSVGERKNPAPSR-----REIEISKVIKEALEPAVMLEKFPRTAVDVFIEVLQ 131 Query: 121 ADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVED 180 ADGGTR A++T A VAL DA PM+ MVAA++ G V + D+ ED Sbjct: 132 ADGGTRCAALTAASVALADA-----------GIPMRDMVAAIAAGKVADTVILDVNNEED 180 Query: 181 SAAETDMNV 189 A + DM + Sbjct: 181 QAGQADMPI 189 >UniRef50_D2VEP3 Predicted protein n=1 Tax=Naegleria gruberi RepID=D2VEP3_NAEGR Length = 248 Score = 80.5 bits (197), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 59/196 (30%), Positives = 88/196 (44%), Gaps = 24/196 (12%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQ---- 56 +R GR ++++R + N A+GS E G+T+VL PR +K + Q Sbjct: 13 LRVDGRRSHEIRNIKFKLNLFSRADGSAYYEQGNTRVLAAVY----GPREVKNKSQMKND 68 Query: 57 -GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLD 115 I EY M ST R + K+ R+ EI +I + + + I + Sbjct: 69 RAIINCEYSMATFSTGERKR----QFKKDRRSTEISVVIRQTFESVILTHLYPRTQIDIF 124 Query: 116 CDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDL 175 VLQADGGTR A I A +AL+DA PMK V + + G + G + DL Sbjct: 125 MQVLQADGGTRCACINAATLALLDA-----------GIPMKDFVVSCAAGFIQGSPLTDL 173 Query: 176 EYVEDSAAETDMNVVM 191 Y+ED A D+ + + Sbjct: 174 NYIEDCAGGPDVPIAL 189 >UniRef50_Q9SP08 Exonuclease RRP41 n=15 Tax=Magnoliophyta RepID=Q9SP08_ARATH Length = 241 Score = 77.4 bits (189), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 59/195 (30%), Positives = 89/195 (45%), Gaps = 26/195 (13%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQ---- 56 +R GR N++R + A+GS + E G+TKV+ PR ++ + Q Sbjct: 9 LRLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAVY----GPREIQNKSQQKKN 64 Query: 57 --GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITL 114 + EY M ST R + K R+ E+ +I + + A + + + I + Sbjct: 65 DHAVVLCEYSMAQFSTGDRR-----RQKFDRRSTELSLVIRQTMEACILTELMPHSQIDI 119 Query: 115 DCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCD 174 VLQADGGTR+A I A +AL DA PM+ + + S G +N + D Sbjct: 120 FLQVLQADGGTRSACINAATLALADA-----------GIPMRDLAVSCSAGYLNSTPLLD 168 Query: 175 LEYVEDSAAETDMNV 189 L YVEDSA D+ V Sbjct: 169 LNYVEDSAGGADVTV 183 >UniRef50_UPI00019098A6 ribonuclease PH n=1 Tax=Rhizobium etli IE4771 RepID=UPI00019098A6 Length = 75 Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 31/48 (64%), Positives = 39/48 (81%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVP 48 MRP+GR +Q+R V+ RN++KHAEGS LV+FGDT VLCTAS+EE P Sbjct: 17 MRPSGRKTDQMRKVSFERNFSKHAEGSCLVKFGDTHVLCTASLEEKTP 64 >UniRef50_Q6L224 Ribonuclease PH n=2 Tax=Thermoplasmatales RepID=Q6L224_PICTO Length = 260 Score = 73.6 bits (179), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 103/237 (43%), Gaps = 22/237 (9%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR N R + + NY A GS +VE G TKV+ IEEG P F QG + Sbjct: 26 RLDGRGLNDFRDIKIFENYIPKASGSAMVELGRTKVVAGVKIEEGEP-FPDTPDQGVMAL 84 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAA--VDLKAL------GEFTIT 113 MLP + T A G G +E R++ R +R + +D+ L + + Sbjct: 85 NIEMLPMAFPTFEA-----GPPGEEAIEYSRVVDRGIRESKMIDVTRLVIEPGTKVWMVF 139 Query: 114 LDCDVLQADGGTRTASITGACVALVDALQKLV----ENGKLKTNPMKGMVAAVSVGIVNG 169 +D D++ G AS A AL +A+ E+ KL P+ +V++ + Sbjct: 140 IDIDIINYAGNIIDASTIAAVAALRNAIVPASRIGGEDFKL---PVNANPVSVTMAKIGD 196 Query: 170 EAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESN 226 E V D + E+ + + + M ED I +Q GE FT E++ + +R N Sbjct: 197 ELVIDPDLEEEQVSNGRITITMAEDDHIHAIQKGDVGE-FTMEDIRKAIKASRDTGN 252 >UniRef50_D2EG59 3' exoribonuclease n=1 Tax=Candidatus Parvarchaeum acidiphilum ARMAN-4 RepID=D2EG59_9EURY Length = 235 Score = 72.4 bits (176), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/169 (30%), Positives = 84/169 (49%), Gaps = 18/169 (10%) Query: 6 RSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTAS-IEEGVPRFLKGQGQGWITAEYG 64 R +++RP+ +A+GS + G+T+ + EE PR ++ +G I +Y Sbjct: 9 RKFDELRPMEAETGIIPNAKGSARFKIGNTEAIAAVYGPEEVKPRHIEKVNKGIIVCKYD 68 Query: 65 MLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGG 124 MLP S R A+ R +EI ++I AL AV L+ + + + + QAD G Sbjct: 69 MLPFSVPDR-----ARPGMDRRDIEISQVITNALNRAVILEEMPRAMVNVRIYITQADAG 123 Query: 125 TRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVC 173 TR AS+T A +A DA PM+ +VAAV+ G + G+++C Sbjct: 124 TRCASLTAASMACADA-----------GLPMRDLVAAVAAGKI-GDSIC 160 >UniRef50_B3T6G7 Putative 3' exoribonuclease family, domain 1 n=1 Tax=uncultured marine microorganism HF4000_APKG2H5 RepID=B3T6G7_9ZZZZ Length = 238 Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 58/209 (27%), Positives = 93/209 (44%), Gaps = 18/209 (8%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTA-SIEEGVPRFLKGQGQGWIT 60 R GR +RP+++ A GS V +G V+ E PR + Q + + Sbjct: 16 RMDGRKPADLRPISIEVGVVPVAAGSACVRWGTNHVIAAVYGPMEAHPRKISRQDRAVLD 75 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 Y M P ST R + R+ EI ++ + AL + V L+ I ++ ++L Sbjct: 76 VRYNMAPFSTTDR-----IRPGFNRRSREISKVTSDALESVVLLEMYPRSKIRVEIEILC 130 Query: 121 ADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVED 180 A+ GTR +T A VAL A PM MV +V+ G +NG +CDL ED Sbjct: 131 AEAGTRCVGLTAASVALAHA-----------GIPMTDMVVSVASGKINGVVICDLNKEED 179 Query: 181 SAAETDMNV-VMTEDGRIIEVQGTAEGEP 208 + E D+ + ++ G ++ +Q + P Sbjct: 180 NYGEADLPMGMLPNSGDLVFLQMDGDLSP 208 >UniRef50_Q9S7G6 Polynucleotide phosphorylase n=36 Tax=cellular organisms RepID=Q9S7G6_ARATH Length = 991 Score = 69.7 bits (169), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 63/215 (29%), Positives = 95/215 (44%), Gaps = 40/215 (18%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVP------RFLKGQ 54 R GR ++VRP+ +Y GS L GDT+VLCT ++ G P L G Sbjct: 363 FRVDGRHVDEVRPIYCESHYLPALHGSALFSRGDTQVLCTVTL--GAPAEAQSLDSLVGP 420 Query: 55 GQGWITAEYGMLPRSTHTRNAREAAKGKQGG---RTMEIQRLIARALRAAVDLKALGEFT 111 + Y P T+ GK+GG R + L +AL A + + +T Sbjct: 421 PKKRFMLHYSFPPYCTN-------EVGKRGGLNRREVGHGTLAEKALLAVLPPEEAFPYT 473 Query: 112 ITLDCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV---- 167 I ++ +V+ +DG T AS+ G +AL+DA P++ VA VSVG++ Sbjct: 474 IRINSEVMSSDGSTSMASVCGGSMALMDA-----------GIPLRAHVAGVSVGLITDVD 522 Query: 168 --NGE-----AVCDLEYVEDSAAETDMNVVMTEDG 195 +GE V D+ +ED + D + T DG Sbjct: 523 PSSGEIKDYRIVTDILGLEDHLGDMDFKIAGTRDG 557 >UniRef50_Q17533 Putative exosome complex exonuclease RRP41 n=4 Tax=root RepID=EXOS4_CAEEL Length = 240 Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 52/189 (27%), Positives = 89/189 (47%), Gaps = 23/189 (12%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 R GR Q+R + ++AEGS +E G+TKVLC V +G+ I Sbjct: 9 FRIDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLC------AVYGPYEGKSSKRIE 62 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGG--RTMEIQRLIARALRAAVDLKALGEFTITLDCDV 118 + ++ + + T+ + K + G ++ EI RL+ +A + + +A + + C+V Sbjct: 63 DKCAIVCQYSATKFSGLERKNRTRGDRKSTEISRLLEKAFESVILTEAFPRSQLDIFCEV 122 Query: 119 LQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYV 178 +Q DG A + +AL DA PMKG+ +A + G+V+G+ + DL Sbjct: 123 IQGDGSNLAACVNATSLALADA-----------GIPMKGIASAATCGVVDGKPIVDLT-- 169 Query: 179 EDSAAETDM 187 S ETD+ Sbjct: 170 --SREETDL 176 >UniRef50_C7DI01 3' exoribonuclease n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DI01_9EURY Length = 246 Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 61/202 (30%), Positives = 96/202 (47%), Gaps = 17/202 (8%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTA-SIEEGVPRFLKGQGQGWIT 60 R GR N++RP+ + +A GS +E+G+ KVL +E PR L + I Sbjct: 16 RLDGRDFNELRPLKIEAGILANANGSAYLEWGNNKVLAAVYGPKEATPRHLADTNKAIIK 75 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 Y M P S+ + R R +EI ++ V L+ I + ++LQ Sbjct: 76 CRYSMAPFSSMGDHGRSGPNR----RAIEISKVTKEVFENVVMLEEFPGSEIEIFIEILQ 131 Query: 121 ADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVED 180 +DGGTR A IT A VAL +A + K MV AVS G ++ V D+ +ED Sbjct: 132 SDGGTRAAGITAAAVALANAGIHV-----------KDMVYAVSAGRIDEHVVIDVNMIED 180 Query: 181 SAAETDMNVVMT-EDGRIIEVQ 201 + ++ DM V ++ +D ++ +Q Sbjct: 181 NYSDADMPVSISPKDNSVLLLQ 202 >UniRef50_C3N5R4 Probable exosome complex exonuclease 2 n=12 Tax=Sulfolobaceae RepID=ECX2_SULIA Length = 275 Score = 66.2 bits (160), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 62/226 (27%), Positives = 97/226 (42%), Gaps = 30/226 (13%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR RP+++T +Y K A+GS LV+ G T VL +E P + QG + Sbjct: 28 RQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKP-YEDTPNQGNLIV 86 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALR--AAVDLKAL------GEFTIT 113 +LP + T G +E+ R++ R+LR A+DL L +T+ Sbjct: 87 NVELLPLAYETFEP-----GPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVW 141 Query: 114 LDCDVLQADGGTRTASITGACVALVDALQKLVEN-------------GKLKTNPMKGMVA 160 LD VL G A + AL + VE GKL P+ V Sbjct: 142 LDVYVLDYGGNVLDACTLASVAALHNTKVYKVEQDSNGFRVNKNEVVGKL---PLNHPVV 198 Query: 161 AVSVGIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEG 206 VS+ V+ + D + E+S +T ++ T D +I+ +Q + +G Sbjct: 199 TVSIAKVDKYLIVDPDLDEESIMDTKVSFSYTPDLKIVGIQKSGKG 244 >UniRef50_Q74NF6 NEQ248 n=1 Tax=Nanoarchaeum equitans RepID=Q74NF6_NANEQ Length = 233 Score = 66.2 bits (160), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 56/203 (27%), Positives = 91/203 (44%), Gaps = 28/203 (13%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLK-GQGQGWI 59 MR GR N++R + A+GS G+T + A++ +LK G+ Q + Sbjct: 1 MRFDGRDYNEIRDTEMKIGVISKADGSAYCRTGNT--IAIAAV------YLKPGREQSNL 52 Query: 60 TAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVL 119 Y MLP + R + R +E+ +IA+AL A+ + + TI +++ Sbjct: 53 KVSYRMLPFAGEERKGLGLTR-----REIELSYIIAKALEPAIIFEEIPYLTIEASVEII 107 Query: 120 QADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVE 179 +AD GTR A+I +AL A PMK +V A++VG V + V DL E Sbjct: 108 KADAGTRVAAINALSLALAHA-----------GIPMKALVGAIAVGKVGEKIVLDLNKQE 156 Query: 180 DSAAETDMNVVMTEDGRIIEVQG 202 + + D ++ E + E G Sbjct: 157 E---DYDSEIIKKELPQYYEYYG 176 >UniRef50_Q8TGX5 Probable exosome complex exonuclease 2 n=8 Tax=Archaea RepID=ECX2_METAC Length = 266 Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 63/230 (27%), Positives = 100/230 (43%), Gaps = 17/230 (7%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR R + L N AEGS V G+T+VL ++ G P F Q +G I Sbjct: 25 RQDGRGFKDFRDLKLETNVIVKAEGSAKVTLGNTQVLVGVKLQTGTP-FPDSQDEGVIIT 83 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALR--AAVDLKAL----GE--FTIT 113 + P ++ E G +E+ R++ R +R A+D+K L GE + + Sbjct: 84 NLELNPIASP-----EFEPGPPREEAIEMARVVDRGIRESGAIDIKKLCITVGESVWIVF 138 Query: 114 LDCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNP--MKGMVAAVSVGIVNGEA 171 +D VL DG AS A AL+ + + G + P MK M +++ + + Sbjct: 139 IDVHVLNDDGNIIDASCLAAIAALMTTMVPNEQQGLGEDVPLAMKEMPVGITIAKIGSKL 198 Query: 172 VCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALA 221 + D E++ ET + +V + DG + +Q P T EL + LA Sbjct: 199 MVDPSLDEEAVCETKLTIVSSSDGSVAGMQKMGIS-PLTEAELFEAIDLA 247 >UniRef50_A9VBQ1 Predicted protein n=2 Tax=Fungi/Metazoa group RepID=A9VBQ1_MONBE Length = 1336 Score = 63.9 bits (154), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 64/203 (31%), Positives = 90/203 (44%), Gaps = 25/203 (12%) Query: 3 PAGR--SNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTAS-IEEGVPRFLKGQGQGWI 59 PA R ++++R V + A+GS VE G+TKVL + + R G + Sbjct: 30 PARRVEGDDELRSVKAKLGVFEQADGSAYVEQGNTKVLAIINGPHDSDARGPNASGHLTV 89 Query: 60 TAEYGMLPRSTHTRNAREAAKGK---QGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 + E+ ST R AR K QG R IAR L + V + L TI L+ Sbjct: 90 SCEFIYASFSTDQRRARSRLDRKLAEQGTR-------IARTLESVVMGQLLSRSTINLNV 142 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLE 176 VLQADGG +I A +A++DA PMK + A + G++ G AV D Sbjct: 143 QVLQADGGVLATAINAASLAMMDA-----------GVPMKDFLCACNAGVLEGVAVLDTN 191 Query: 177 YVEDSAAETDMNV-VMTEDGRII 198 + E A D+ V VM I+ Sbjct: 192 HSEALARGPDLTVAVMPRTNTIV 214 >UniRef50_Q2GEY8 Polyribonucleotide nucleotidyltransferase n=2 Tax=Neorickettsia RepID=PNP_NEOSM Length = 757 Score = 63.2 bits (152), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 53/209 (25%), Positives = 98/209 (46%), Gaps = 24/209 (11%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQ 56 +RP GRS ++RP+++ +Y GS L G T+ L A++ +E V + G+ + Sbjct: 317 IRPDGRSLTEIRPISIALDYLPGTHGSALFTRGGTQSLVVATLGSYQDEQVMDDIDGERR 376 Query: 57 GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 + Y LP + A A G R + RL +A++A + K + +T+ L Sbjct: 377 ESVLLHYNFLPYAVGEVGALRAP----GRREIGHGRLALKAVKAVLPGKEVFPYTLRLVS 432 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGI----VNGEAV 172 ++ ++DG + A++ G+ +AL+D P+ VA +++G+ V + Sbjct: 433 EITESDGSSSMATVCGSSLALMDT-----------GVPITKHVAGIAMGLITDGVRSAVL 481 Query: 173 CDLEYVEDSAAETDMNVVMTEDGRIIEVQ 201 D+ ED + D V T +G I+ +Q Sbjct: 482 SDISGDEDMLGDMDFKVAGTRNG-IVALQ 509 >UniRef50_UPI0000D53087 ribonuclease PH n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=UPI0000D53087 Length = 78 Score = 63.2 bits (152), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 26/53 (49%), Positives = 41/53 (77%) Query: 162 VSVGIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEEL 214 +S+G+ + + + DL+Y EDS A+ D+N+VMT+D +IE+QGTAE PF+ E+L Sbjct: 2 ISLGVKDDKILVDLDYQEDSTADADINIVMTQDLDLIEIQGTAEERPFSQEQL 54 >UniRef50_C1L2N7 Polyribonucleotide nucleotidyltransferase n=48 Tax=Bacteria RepID=PNP_LISMC Length = 723 Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 60/208 (28%), Positives = 98/208 (47%), Gaps = 33/208 (15%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVL--CT-ASIEEGVPRFLKGQGQG 57 +RP GR N++RP++ GS L G T+ L CT A + E + + G G Sbjct: 316 IRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLAPLREH--QIIDGLG-- 371 Query: 58 WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIA------RALRAAVDLKALGEFT 111 T EY R H N + + G+ G R +R I RAL+ + + +T Sbjct: 372 --TEEYK---RFMHHYNFPQFSVGETGPRRAPGRREIGHGALGERALQYVIPSEEEFPYT 426 Query: 112 ITLDCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV---- 167 I L +VL+++G + ASI G+ +A++DA P+K VA +++G+V Sbjct: 427 IRLVSEVLESNGSSSQASICGSTLAMLDA-----------GVPIKAPVAGIAMGLVKLGD 475 Query: 168 NGEAVCDLEYVEDSAAETDMNVVMTEDG 195 + + D++ +ED + D V T+DG Sbjct: 476 DYTILSDIQGMEDHFGDMDFKVAGTKDG 503 >UniRef50_A9TY02 Predicted protein n=3 Tax=Viridiplantae RepID=A9TY02_PHYPA Length = 246 Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 56/190 (29%), Positives = 82/190 (43%), Gaps = 16/190 (8%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVP-RFLKGQGQGWI 59 +R GR ++R + A+GS L G+T+V+ V + + + + Sbjct: 11 LRLDGRRPPEMRHLHAVVGVVPSADGSALFHMGNTQVMAVVYGPHEVHNKAHQLHDKALV 70 Query: 60 TAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVL 119 EY M ST +GK R E+ +I + L AA+ L I + VL Sbjct: 71 RCEYSMAAFST----GERRRRGKTDRRATELSLVIGQTLEAAIMTHLLPRSQIDIYVQVL 126 Query: 120 QADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVE 179 QADGGTR A I A +AL DA PM+ +V + + G +N + DL Y E Sbjct: 127 QADGGTRAACINAASMALADA-----------GIPMRDLVVSCAAGYLNSTPLLDLNYQE 175 Query: 180 DSAAETDMNV 189 DS D+ V Sbjct: 176 DSGGGPDLVV 185 >UniRef50_C9RL26 Polyribonucleotide nucleotidyltransferase n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RL26_FIBSS Length = 744 Score = 60.8 bits (146), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 52/207 (25%), Positives = 95/207 (45%), Gaps = 26/207 (12%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTK--VLCTASIEEGVPRFLKGQGQGW 58 +R GR+ +VRP+ + A GS + + G+T+ V+CT + RF QG+G Sbjct: 338 VRLDGRTTTEVRPIEIEMGVLPRAHGSAIFQRGETQGLVICTLGTKADEQRFESLQGEG- 396 Query: 59 ITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDV 118 A+ ML + + E K R + L R+L A + L +TI + ++ Sbjct: 397 --AKSYMLHYNFPPFSVGECKKLGLSRREIGHGHLAERSLAAVLPLPEDFPYTIRVVSEI 454 Query: 119 LQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEA------- 171 ++++G + AS+ G C++L+DA P+K VA +++G+++ + Sbjct: 455 MESNGSSSMASVCGGCLSLMDA-----------GVPIKAPVAGIAMGLISEKGSVKEGGK 503 Query: 172 ---VCDLEYVEDSAAETDMNVVMTEDG 195 + D+ ED + D V T +G Sbjct: 504 IKILSDITGTEDHLGDMDFKVTGTAEG 530 >UniRef50_Q6CA11 YALI0D06776p n=12 Tax=Saccharomycetales RepID=Q6CA11_YARLI Length = 287 Score = 60.5 bits (145), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 52/181 (28%), Positives = 79/181 (43%), Gaps = 16/181 (8%) Query: 1 MRPAGRSNNQVRPVTLTRN-YTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWI 59 +R GR N++R N + A+GS VE+G TKV+CT + I Sbjct: 58 LRTDGRRWNEIRNFDCKINTHPTSADGSSYVEWGHTKVVCTVDGPREPDNRQNTTDRAVI 117 Query: 60 TAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVL 119 + + ST TR R+ + R E+ LI + L AV K I ++ V+ Sbjct: 118 SVNVNVASFSTETRIKRQ----RNDKRLAEMNILIRQLLEEAVLTKLNPRTQIAVNITVI 173 Query: 120 QADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVE 179 DGG A I AC+A++DA P+ V+A S G+ + A+ DL +E Sbjct: 174 AQDGGLLPACINAACLAMIDA-----------GVPLTDYVSACSSGVYSNNALIDLNTLE 222 Query: 180 D 180 + Sbjct: 223 E 223 >UniRef50_Q6MDI2 Polyribonucleotide nucleotidyltransferase n=17 Tax=Chlamydiales RepID=PNP_PARUW Length = 697 Score = 59.7 bits (143), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 50/199 (25%), Positives = 89/199 (44%), Gaps = 15/199 (7%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVL--CTASIEEGVPRF--LKGQGQ 56 +R GR++ +R + + ++ A GS L G+T+ L CT RF L+G+G Sbjct: 315 VRSDGRTSTDIRFIDIEQSLLPRAHGSSLFTRGETQALAVCTLGGASMAQRFEDLEGEGN 374 Query: 57 GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 +Y P S G G R + +L RAL A + K +TI L+ Sbjct: 375 NRFYLQYSFPPYSV----GEVGRVGAPGRREIGHGKLAERALMAVIPTKEQFPYTIRLES 430 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLE 176 ++ +++G + A++ G C+AL+DA G P+ G+ + + + D+ Sbjct: 431 NITESNGSSSMATVCGGCLALMDA-------GVAIKRPVAGIAMGLILENERFIILSDIL 483 Query: 177 YVEDSAAETDMNVVMTEDG 195 +ED+ + D V ++G Sbjct: 484 GIEDALGDMDFKVTGDQNG 502 >UniRef50_C7DI02 3' exoribonuclease n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DI02_9EURY Length = 258 Score = 59.3 bits (142), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 63/232 (27%), Positives = 106/232 (45%), Gaps = 23/232 (9%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTAS-IEEGVPRFLKGQGQGWIT 60 R R + R + ++R HAEGS + G TKVL ++E V QG ++ Sbjct: 21 REDSRGSMDFRDLKISRGVIDHAEGSAQADLGATKVLAGVKLVQEDVYEDTPDQGNLVVS 80 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAA--VDLKAL-----GEFTIT 113 AE +LP + A E G +E+ R++ RA+RA +DLK+L +T+ Sbjct: 81 AE--LLPLA-----AAEYETGPPSPEAIELGRVVDRAIRAGNCIDLKSLLLEEGKAWTVY 133 Query: 114 LDCDVLQADGGTRTASITGACVALVDALQKLVENGKL------KTNPMKGMVAAVSVGIV 167 +D VL DG AS+ A A++DA +GK K + +V++ + + Sbjct: 134 VDVYVLNFDGNLFDASVIAAMSAILDARVPEYADGKADYTKREKKLKVDNVVSSTTFAKI 193 Query: 168 NGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLA 219 G+A+ L+ + D + ++ DG++I F+ EE+ L+A Sbjct: 194 -GKAIL-LDPTGNEELGMDARLTISTDGKMIRAMQKGLAGSFSVEEIESLIA 243 >UniRef50_Q965N3 Putative uncharacterized protein n=2 Tax=Caenorhabditis elegans RepID=Q965N3_CAEEL Length = 745 Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 54/221 (24%), Positives = 90/221 (40%), Gaps = 53/221 (23%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRF---------- 50 +R GR ++ RP+T+ + K G + + G T+V+ T + + F Sbjct: 333 IRCDGRRPDEFRPITIHVDMYKKLHGCSIFQRGQTQVMSTVTFDSPAAAFHPDSVAQLLG 392 Query: 51 --------LKGQGQGWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAV 102 L + G+ E+G +T + N RE G L ++L+ Sbjct: 393 SQRKKSFMLHYEFPGFAINEFG----TTRSLNRREIGHGA----------LAEKSLKNL- 437 Query: 103 DLKALGEFTITLDCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAV 162 A + L C VL+++G + AS+ G +AL DA PMK A V Sbjct: 438 -FPADFPYATRLACQVLESNGSSSMASVCGGSLALFDA-----------GVPMKNAAAGV 485 Query: 163 SVGIVNGEAVCDLEY--------VEDSAAETDMNVVMTEDG 195 ++G+++ EA + +Y +ED A + D V T DG Sbjct: 486 AIGLISDEAEPETKYRVLTDILGIEDYAGDMDFKVAGTRDG 526 >UniRef50_Q54EU6 Putative uncharacterized protein n=1 Tax=Dictyostelium discoideum RepID=Q54EU6_DICDI Length = 247 Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 52/191 (27%), Positives = 85/191 (44%), Gaps = 22/191 (11%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGW-- 58 +R GR N++R + + K A+GS E G+TK++ PR + G+G Sbjct: 12 LRIDGRRANELRRINVEMGIFKRADGSAYYEQGNTKIIAAVY----GPREISVSGKGVFD 67 Query: 59 ---ITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLD 115 + E+ ST R ++ KG + T EI L+ +A + + I + Sbjct: 68 RAVVKCEFSSSSFSTTERKPQQKTKGDR--VTTEIANLVKQAFESTIHTHLYPRSQINIY 125 Query: 116 CDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDL 175 VLQ+DGG + A+I + +AL+DA MK + A S ++G AV DL Sbjct: 126 LQVLQSDGGLKAAAINASTLALIDA-----------GISMKDFICACSTSCIDGIAVLDL 174 Query: 176 EYVEDSAAETD 186 +E+ + D Sbjct: 175 NNIEERSGGPD 185 >UniRef50_Q469M2 Ribosomal RNA-processing protein RRP42 n=5 Tax=Archaea RepID=Q469M2_METBF Length = 260 Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 68/232 (29%), Positives = 102/232 (43%), Gaps = 21/232 (9%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR R + L N AEGS V GDT+VL ++ G P F Q +G I Sbjct: 22 RQDGRGFKDFRDIKLETNVIPKAEGSAKVTLGDTQVLVGVKLQPGTP-FPDSQDEGVIIT 80 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALR--AAVDLKAL----GE--FTIT 113 + P ++ E G +E+ R++ R +R A+D+K L GE + Sbjct: 81 NLELNPIASP-----EFEPGPPREEAIEMARVVDRGIRESGAIDIKKLCISVGESVWIAY 135 Query: 114 LDCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNP--MKGMVAAVSVGIVNGEA 171 +D VL DG AS A AL+ + ++G P MK M V++ + + Sbjct: 136 IDVHVLNDDGNIIDASSLAAIAALMTTIVPNEQHGIGADVPLAMKEMPVGVTLAKIGSKL 195 Query: 172 VCDLEYVEDSAAETDMNVVMTEDGRIIEVQ--GTAEGEPFTHEELLILLALA 221 + D E + ET + VV + DG + +Q GT PFT E+L + +A Sbjct: 196 MVDPSLDEGAVCETKLTVVSSSDGSVAGMQKMGTV---PFTEAEVLEAIDMA 244 >UniRef50_B6K3J3 Exosome complex exonuclease RRP41 n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6K3J3_SCHJY Length = 243 Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 50/184 (27%), Positives = 84/184 (45%), Gaps = 20/184 (10%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKG---QGQG 57 +R GR N++R K A GS ++ G+T+VLC ++ ++KG Q + Sbjct: 13 LRQDGRRWNEMREFDCRIGVEKTAHGSSFIQHGNTRVLC--NVNGPSEPYIKGKSKQEKA 70 Query: 58 WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCD 117 +I E P S R R + + + + IQR +A++ V+L + +I+L+ Sbjct: 71 FINVELNFAPFSLIDRKKRHRSDKRIQEQCVAIQRTFEQAIQ--VELYPKSQISISLN-- 126 Query: 118 VLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEY 177 VL+ DGG I A +AL+DA +V+ V + GI + + DL Sbjct: 127 VLEDDGGAIATCINAATLALIDAGIAMVD-----------YVCCATAGIYETQVLLDLNT 175 Query: 178 VEDS 181 E+S Sbjct: 176 NEES 179 >UniRef50_UPI0001925525 PREDICTED: similar to predicted protein n=1 Tax=Hydra magnipapillata RepID=UPI0001925525 Length = 258 Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/139 (28%), Positives = 62/139 (44%), Gaps = 6/139 (4%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR N++RP+ L A GS VE DTK++C P+ + +G I Sbjct: 35 RQDGRGENEIRPMYLKAGTIHQANGSSYVETCDTKLICAVYGPRDNPKRHQFSSKGNIFC 94 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQA 121 E P S H R + + + K E I +A +AV L++ + I + ++L+ Sbjct: 95 EVTFAPFSWHERVSNQDSLSK------EYSSAIVQAFESAVCLESYPKAQIDIYINILEY 148 Query: 122 DGGTRTASITGACVALVDA 140 G + + A +AL DA Sbjct: 149 SGNCLSYAFIAASIALADA 167 >UniRef50_A7RQ94 Predicted protein n=3 Tax=Eumetazoa RepID=A7RQ94_NEMVE Length = 268 Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 41/136 (30%), Positives = 61/136 (44%), Gaps = 5/136 (3%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR +++RP+ L A+GS +E +TKV+C PR + +G +T Sbjct: 36 RQDGRRPDELRPMFLRAGVVSQAKGSAYIEMKNTKVICAIYGPREAPRRQEFSMKGRLTC 95 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQA 121 E+ P S R K Q E L+ +AL AV L+ + + + VL+ Sbjct: 96 EFKFAPFSCIYRR-----KHIQDAEEKENSYLVVQALEPAVCLEKFPKAQVDIYITVLEN 150 Query: 122 DGGTRTASITGACVAL 137 DG +A I A VAL Sbjct: 151 DGSALSAGIICASVAL 166 >UniRef50_B1L6N6 3' exoribonuclease n=1 Tax=Candidatus Korarchaeum cryptofilum OPF8 RepID=B1L6N6_KORCO Length = 268 Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 62/244 (25%), Positives = 114/244 (46%), Gaps = 33/244 (13%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR ++ RP+ + AEG ++ G+T+VL + G P F +G + Sbjct: 25 RVDGRGLHEYRPIEVLNGTFTKAEGEAWLKLGETQVLVGVKADLGEP-FPDTPDKGVFVS 83 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRA--AVDLKAL----GE--FTIT 113 +LP ++ T +G +E+ R++ RA+R+ A+DL +L G+ + I Sbjct: 84 NAELLPVASPTFEPGPPDEG-----AIELARVVDRAIRSADAIDLGSLVILPGKLVYMIF 138 Query: 114 LDCDVLQADGGTRTASITGACVAL----VDALQKLVENGKLKTNPMKGMVAAVSVGI--- 166 LD VL DG + + +AL + ++ L ENG+++ K + + I Sbjct: 139 LDMYVLDYDGNLEDSLTLASLIALGRSEIPEVE-LKENGEIEVKESKRKLELKDIPINFS 197 Query: 167 ---VNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQ---GTAEGEPFTHEELLILLAL 220 + + + D E+S ++ + V + +DG++ VQ GT FT EE+L ++ + Sbjct: 198 FVKIGSKILLDPTLEEESVSDASITVAINKDGKVCSVQKRHGT-----FTVEEILNIVNV 252 Query: 221 ARGE 224 AR + Sbjct: 253 ARSK 256 >UniRef50_D1AX54 Polyribonucleotide nucleotidyltransferase n=2 Tax=Fusobacteriaceae RepID=D1AX54_STRM9 Length = 732 Score = 57.8 bits (138), Expect = 3e-07, Method: Composition-based stats. Identities = 58/228 (25%), Positives = 101/228 (44%), Gaps = 24/228 (10%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQG 57 R GR +++RP+ + K GS L G+T+ L TA++ +E + ++G+ Sbjct: 340 RADGRKIDEIRPLNAQIDVLKMPHGSALFTRGETQALVTATLGSKEDEQIIDGMEGEYNK 399 Query: 58 WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCD 117 Y P S A G R + L RAL+A + L +T+ + + Sbjct: 400 KFFLHYNFPPFSVGEAGFMRAP----GRRELGHGNLAERALKAVMPLIDDFPYTVRVVSE 455 Query: 118 VLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV----NGEAVC 173 + +++G + ASI G +AL+ A P+KG VA +++G++ N + Sbjct: 456 ITESNGSSSQASICGGSLALMAA-----------GVPIKGTVAGIAMGLIKEAENFTVLT 504 Query: 174 DLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALA 221 D++ +ED + D V T+ G I +Q + E E + I L A Sbjct: 505 DIQGLEDHLGDMDFKVAGTKKG-ITAIQMDIKIEGINKEIMEIALTQA 551 >UniRef50_Q9NPD3 Exosome complex exonuclease RRP41 n=11 Tax=Coelomata RepID=EXOS4_HUMAN Length = 245 Score = 56.6 bits (135), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 52/187 (27%), Positives = 82/187 (43%), Gaps = 25/187 (13%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQ------G 55 R GR ++R + A+GS +E G+TK L ++ G P ++G Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKAL---AVVYG-PHEIRGSRARALPD 68 Query: 56 QGWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLD 115 + + +Y ST R R K + E+ + + AA+ + I + Sbjct: 69 RALVNCQYSSATFSTGERKRRPHGDRK----SCEMGLQLRQTFEAAILTQLHPRSQIDIY 124 Query: 116 CDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDL 175 VLQADGGT A + A +A++DA PM+ V A S G V+G A+ DL Sbjct: 125 VQVLQADGGTYAACVNAATLAVLDA-----------GIPMRDFVCACSAGFVDGTALADL 173 Query: 176 EYVEDSA 182 +VE++A Sbjct: 174 SHVEEAA 180 >UniRef50_B9KYR9 Polyribonucleotide nucleotidyltransferase n=53 Tax=Bacteria RepID=PNP_THERP Length = 790 Score = 56.6 bits (135), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 57/206 (27%), Positives = 91/206 (44%), Gaps = 29/206 (14%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVL--CTASIEEGVPRFLKGQG---Q 56 RP GR +++R + + GS L G T+VL CT +E +FL G Sbjct: 325 RPDGRKPDEIREIWIQVGLLPRPHGSALFTRGQTQVLTVCTLGTKEEE-QFLDSLGIEET 383 Query: 57 GWITAEYGMLPRST-HTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLD 115 Y P ST R R ++ R + L RAL A + + +T+ L Sbjct: 384 KRYMHHYNFPPFSTGEIRRLRGPSR-----RDIGHGALAERALLAVLPSEDEFPYTMRLV 438 Query: 116 CDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEA---- 171 +VL ++G T AS+ G+ +AL+DA P++ VA V++G+V + Sbjct: 439 SEVLSSNGSTSMASVCGSSLALMDA-----------GVPIRKPVAGVAMGLVTDQTTGRY 487 Query: 172 --VCDLEYVEDSAAETDMNVVMTEDG 195 + D++ +ED+ + D V T DG Sbjct: 488 TILTDIQGIEDALGDMDFKVAGTRDG 513 >UniRef50_B5S2C1 Polyribonucleotide nucleotidyltransferase protein n=5 Tax=Proteobacteria RepID=B5S2C1_RALSO Length = 752 Score = 56.6 bits (135), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 46/170 (27%), Positives = 78/170 (45%), Gaps = 19/170 (11%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQG 57 R GR VRP+ + + A GS L G+T+ L A++ +E + L+G+ + Sbjct: 315 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALQGEYRD 374 Query: 58 WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCD 117 Y M P +T + K ++ G RL RAL + +TI L + Sbjct: 375 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALIPVLPKDDEFAYTIRLVSE 430 Query: 118 VLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV 167 + +++G + AS+ G C+AL+DA P+K VA V++G++ Sbjct: 431 ITESNGSSSMASVCGGCLALMDA-----------GVPVKAHVAGVAMGLI 469 >UniRef50_Q6PBZ8 Exosc4 protein n=10 Tax=Metazoa RepID=Q6PBZ8_DANRE Length = 245 Score = 56.6 bits (135), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 53/196 (27%), Positives = 83/196 (42%), Gaps = 25/196 (12%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKG------QG 55 R GR ++R V + A+GS +E G+TK L ++ G P ++G Sbjct: 13 RLDGRKATELRKVQARMSVFAQADGSAYLEQGNTKAL---AVVYG-PHEIRGSRSKSLHD 68 Query: 56 QGWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLD 115 + I +Y M ST R R K ++ +++ AAV + I + Sbjct: 69 RAIINCQYSMATFSTAERKRRPHGDRKSSEMSLHLKQ----TFEAAVLTELYPRSQIDIY 124 Query: 116 CDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDL 175 +LQADGG +A + A +ALVDA PM+ V A S G V + DL Sbjct: 125 VKILQADGGNYSACVNAATLALVDA-----------GIPMRDYVCACSAGFVEDTPLADL 173 Query: 176 EYVEDSAAETDMNVVM 191 + E+S T + + + Sbjct: 174 CHAEESGGGTALALAL 189 >UniRef50_Q3ABA6 Polyribonucleotide nucleotidyltransferase n=111 Tax=Bacteria RepID=PNP_CARHZ Length = 731 Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 55/207 (26%), Positives = 91/207 (43%), Gaps = 31/207 (14%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +R GR ++VRP+ GS L G T+VL + L G I Sbjct: 325 IRIDGRKTDEVRPIWCEVGLLPRTHGSGLFTRGQTQVLSIVT--------LGAVGDVQIL 376 Query: 61 AEYGM--LPRSTHTRNAREAAKGK------QGGRTMEIQRLIARALRAAVDLKALGEFTI 112 + G+ R H N + G+ G R + L RAL + + + +TI Sbjct: 377 DDLGIEESKRFMHHYNFPPYSVGEVRPMRGPGRREIGHGALAERALEPVIPPEEVFPYTI 436 Query: 113 TLDCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVN-GEA 171 + +VL+++G T S+ G+ +AL+DA P+K VA V++G++ G+ Sbjct: 437 RIVSEVLESNGSTSMGSVCGSTLALMDA-----------GVPIKAPVAGVAMGLIKEGDE 485 Query: 172 VC---DLEYVEDSAAETDMNVVMTEDG 195 V D++ +ED+ + D V T+DG Sbjct: 486 VAILTDIQGIEDALGDMDFKVAGTKDG 512 Score = 40.8 bits (94), Expect = 0.033, Method: Compositional matrix adjust. Identities = 61/224 (27%), Positives = 87/224 (38%), Gaps = 41/224 (18%) Query: 12 RPVTLTR-NYTKHAEGSVLVEFGDTKVLCTAS----IEEGVPRFLKGQGQGWITAEY--- 63 RP+ LT A GSVLV +GDT VL TA+ EG+ F +T +Y Sbjct: 17 RPLKLTAGKVATQASGSVLVSYGDTVVLVTATGSKEPREGIDFF-------PLTVDYEER 69 Query: 64 ----GMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVL 119 G +P R R + K RLI R +R + I + Sbjct: 70 FYAVGKIPGGFIKREGRPSEKAILSA------RLIDRPIRPLFPKGFKNDVHIVATVLSV 123 Query: 120 QADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVE 179 D A++ GA AL L P G + AV VG+V E V + + Sbjct: 124 NQDNPPEIAAMNGASAALT-----------LSHLPFLGPIGAVVVGLVEDELVINPTIEQ 172 Query: 180 DSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARG 223 + + V T D ++ V+ A+ P EE++I A+ RG Sbjct: 173 AEKSRLHLVVAGTRDA-VMMVEAGAQEVP---EEIMI-EAITRG 211 >UniRef50_D1INE0 Whole genome shotgun sequence of line PN40024, scaffold_66.assembly12x (Fragment) n=4 Tax=Magnoliophyta RepID=D1INE0_VITVI Length = 905 Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 54/212 (25%), Positives = 87/212 (41%), Gaps = 34/212 (16%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVP------RFLKGQ 54 +R GR N+VRP+ GS L GDT+VLCT ++ G P L G Sbjct: 317 LRVDGRHLNEVRPLYCESGNLPILHGSSLFSRGDTQVLCTVTL--GAPGDAQRLDSLVGP 374 Query: 55 GQGWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITL 114 Y P S + R ++ G L +AL A + + +T+ + Sbjct: 375 PTKRFMLHYSFPPFSINEVGKRVGLNRREVGHGT----LAEKALLAVLPPEEEFPYTVRI 430 Query: 115 DCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV------- 167 + +V+ +DG T A++ G +AL+DA P++ VA +SVG+V Sbjct: 431 NSEVMASDGSTSMATVCGGSMALMDA-----------GIPLREHVAGISVGLVTEVDPST 479 Query: 168 ----NGEAVCDLEYVEDSAAETDMNVVMTEDG 195 + + D+ +ED + D + T G Sbjct: 480 NTIKDYRILTDILGLEDHLGDMDFKIAGTRKG 511 >UniRef50_C5A2B8 Probable exosome complex exonuclease 2 n=20 Tax=Euryarchaeota RepID=ECX2_THEGJ Length = 273 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 59/245 (24%), Positives = 108/245 (44%), Gaps = 25/245 (10%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GRS + R + + + + AEGS V G T+VL ++ G P F +G +T Sbjct: 24 RIDGRSFEEYRDIEIKTGFIEKAEGSAWVRLGGTRVLVGIKVDVGEP-FPDLPDRGVMTT 82 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALR--AAVDLKAL----GEF--TIT 113 ++P ++ T G R +E+ R+I R +R AV+L+ L G+ + Sbjct: 83 NVELVPLASPTFEP-----GPPDERAIELARVIDRGIRESQAVELEKLVIVPGKLVRVVF 137 Query: 114 LDCDVLQADGGTRTASITGACVALV----------DALQKLVENGKLKTNPMKGMVAAVS 163 +D VL DG A+ A AL+ + ++++ + + P+K + V+ Sbjct: 138 IDVHVLDHDGNLFDATGLAAMAALMTTKIPKVEYNEETGEIIKLDEYEPLPVKHVPIPVT 197 Query: 164 VGIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARG 223 + + D E++ ++ + + E G I VQ EG F EE++ + A Sbjct: 198 FAKIGSSIIVDPNLDEETVMDSRLTITTDETGHISAVQ-KGEGGSFKLEEVMYAIDTALK 256 Query: 224 ESNPL 228 +++ L Sbjct: 257 KADEL 261 >UniRef50_C1A3Y1 Polyribonucleotide nucleotidyltransferase n=2 Tax=Bacteria RepID=PNP_GEMAT Length = 732 Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 56/206 (27%), Positives = 92/206 (44%), Gaps = 27/206 (13%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI--EEGVPRFLKGQGQGW 58 +R GR ++VR +++ + A GS L G T+ L A++ + R + G Sbjct: 309 LRVDGRKKDEVRAISIDTSVLPRAHGSALFTRGQTQALVAATLGTAKDAQRLDSIKEPGE 368 Query: 59 IT----AEYGMLPRST-HTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTIT 113 +T Y P ST R R ++ R + L RAL+ + A +TI Sbjct: 369 VTRSFMLHYNFPPFSTGEVRPMRGTSR-----REIGHGNLAERALQGVLPDFADFPYTIR 423 Query: 114 LDCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVN-GE-- 170 + DVL+++G + AS+ G ++L DA P+K VA V++G++ GE Sbjct: 424 IVSDVLESNGSSSMASVCGGSLSLFDA-----------GVPLKAAVAGVAMGLIKEGERY 472 Query: 171 -AVCDLEYVEDSAAETDMNVVMTEDG 195 + D+ ED + D V T+DG Sbjct: 473 AILTDILGTEDHLGDMDFKVAGTKDG 498 >UniRef50_A8PS54 3' exoribonuclease family, domain 2 containing protein n=1 Tax=Brugia malayi RepID=A8PS54_BRUMA Length = 752 Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 50/212 (23%), Positives = 91/212 (42%), Gaps = 39/212 (18%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIE--------EGVPRFLKG 53 R GR N++RPV + + K+ GS L + G T+V T + + + + + L Sbjct: 349 RCDGRKFNELRPVNIRMDVHKNLHGSALFQRGQTQVFSTVTFDAPSAAFQPDALSQLLGA 408 Query: 54 QGQGWITAEYGMLPRSTH--TRNAREAAKGKQGGRTME--IQRLIARALRAAVDLKALGE 109 Q + Y +T + +AR + + G E ++RLI Sbjct: 409 QQKKMFMLHYQFPSFATTAISSSARTSRRELGHGALAEKALKRLIPDDF----------P 458 Query: 110 FTITLDCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNG 169 + + L CDVL+++G + AS+ C+AL+DA ++ K A +++G++ Sbjct: 459 YCLRLACDVLESNGSSSMASVCAGCLALLDAGVQI-----------KAPAAGIAMGLIIN 507 Query: 170 E------AVCDLEYVEDSAAETDMNVVMTEDG 195 E + D+ +ED A + D + T G Sbjct: 508 EERNDYRILTDINGLEDFAGDMDFKIAGTVRG 539 >UniRef50_Q9LX74 AT3G46210 protein n=8 Tax=Embryophyta RepID=Q9LX74_ARATH Length = 239 Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 57/221 (25%), Positives = 83/221 (37%), Gaps = 43/221 (19%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR+ NQ+RP+ +RN GS GDTKVL A Sbjct: 5 REDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVL---------------------AA 43 Query: 62 EYGMLPRSTHTRNAREAA--------KGKQGGRTMEIQRLIARALRAAVDLKALGEFTIT 113 YG + NA +A G+ G E + ++ R +++ L T + Sbjct: 44 VYGPKAGTKKNENAEKACFEVIWKPKSGQIGKVEKEYEMILKRTIQSICVLTVNPNTTTS 103 Query: 114 LDCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV-NGEAV 172 + V+ DG +I AC ALVDA PMK + A+ + NG V Sbjct: 104 VIIQVVHDDGSLLPCAINAACAALVDA-----------GIPMKHLAVAICCCLAENGYLV 152 Query: 173 CDLEYVEDSAAETDMNVVMTEDGRIIEVQGT--AEGEPFTH 211 D +E+ +V + +G+ AEGEP H Sbjct: 153 LDPNKLEEKKMTAFAYLVFPNTTLSVLPEGSSVAEGEPVEH 193 >UniRef50_B8D6B8 Probable exosome complex exonuclease 2 n=1 Tax=Desulfurococcus kamchatkensis 1221n RepID=B8D6B8_DESK1 Length = 286 Score = 53.5 bits (127), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 55/215 (25%), Positives = 96/215 (44%), Gaps = 24/215 (11%) Query: 5 GRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYG 64 GR RP+ + N A GS LV+ G T+V+ +E P F G+G + Sbjct: 31 GRGLTDYRPIEVILNPITKASGSSLVKLGGTQVIAGVKLELEEP-FPDRPGEGVLQVHAE 89 Query: 65 MLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALR--AAVDLKAL----GEFTITLDCDV 118 +P ++ + G +E+ R+I R+LR AV L AL G+ ++ D+ Sbjct: 90 FVPLASPSFEP-----GPPDENAIEVARVIDRSLRESKAVKLDALAIEPGKIVWSVYTDI 144 Query: 119 LQAD--GGTRTASITGACVALVDA-LQKLV--ENGKLKTN-------PMKGMVAAVSVGI 166 D G + + +AL + + +L+ ENG + P+ +VA V++GI Sbjct: 145 YLVDHQGNIIDTGMLASMLALATSRIPELIKGENGYKVDHTKYVGPLPINTLVATVTMGI 204 Query: 167 VNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQ 201 N + D E++ ++ + + + E GRI +Q Sbjct: 205 YNDVIIVDPLLEEEAVIDSFITIAIDESGRICGIQ 239 >UniRef50_A5VCY9 Polyribonucleotide nucleotidyltransferase n=438 Tax=cellular organisms RepID=PNP_SPHWW Length = 774 Score = 53.1 bits (126), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 50/201 (24%), Positives = 88/201 (43%), Gaps = 21/201 (10%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVL--CTASIEEGVPRFLKGQGQGWI 59 R GR VRP+ ++ A GS L G+T+ + CT +E G + Sbjct: 314 RIDGRDTRTVRPIVAEAHFLPRAHGSALFTRGETQSISTCTLGTKESEQMI---DGLNGL 370 Query: 60 TAEYGMLPRSTHTRNAREAAK-GKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDV 118 E+ ML + + E + G G R + +L RAL A + K +TI L D+ Sbjct: 371 RYEHFMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHAVLPTKEEFPYTIRLTSDI 430 Query: 119 LQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV----NGEAVCD 174 +++G + A++ G +A++DA P+K V+ +++G++ + + D Sbjct: 431 TESNGSSSMATVCGGSLAMMDA-----------GVPIKRPVSGIAMGLILEGKDFAVISD 479 Query: 175 LEYVEDSAAETDMNVVMTEDG 195 + ED + D V T +G Sbjct: 480 ILGDEDHLGDMDFKVAGTSEG 500 >UniRef50_D0WEI7 Polyribonucleotide nucleotidyltransferase n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WEI7_9ACTN Length = 769 Score = 52.8 bits (125), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 49/204 (24%), Positives = 90/204 (44%), Gaps = 27/204 (13%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR+ ++RP+ + Y GS L + G T+V+ A++ L + Q T Sbjct: 345 RADGRAPEEIRPLYIRPGYLPRVHGSGLFQRGQTQVMSVATL------GLLNEAQRLDTI 398 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQR------LIARALRAAVDLKALGEFTITLD 115 + R H N G+ G +R L RA+ + + ++I + Sbjct: 399 DPQTTRRYMHQYNFPPYCTGEVGRMGAPKRREVGHGALAERAILPVLPNEDEFPYSIRVV 458 Query: 116 CDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGE----A 171 +VL+++G + AS G+C+AL+DA P+K V+ V++G++ + Sbjct: 459 SEVLESNGSSSMASTCGSCLALMDA-----------GVPIKAPVSGVAMGLIKEDDGVVI 507 Query: 172 VCDLEYVEDSAAETDMNVVMTEDG 195 + D++ +ED + D V T +G Sbjct: 508 LSDIQGLEDFLGDMDFKVTGTPEG 531 >UniRef50_A9B8G1 Polyribonucleotide nucleotidyltransferase n=38 Tax=Bacteria RepID=PNP_HERA2 Length = 777 Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 57/208 (27%), Positives = 95/208 (45%), Gaps = 31/208 (14%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQ---- 56 +R GR N++RP+ + GS L G T+VL A++ G P G Q Sbjct: 320 IRVDGRKVNEIRPIAVDVGVLPRVHGSGLFTRGQTQVLTVATL--GSP----GDEQRLDD 373 Query: 57 -GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQ--RLIARALRAAVDLKALGEFTIT 113 G T + M + + EA + +G R +I +L RAL + K +T+ Sbjct: 374 LGIETTRHYMHHYNFPAFSTGEA-RPSRGPRRRDIGHGKLAERALVPVLPEKDKFPYTMR 432 Query: 114 LDCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGE--- 170 L +VL ++G + AS+ G+ +AL+DA P+K VA V++G++ G+ Sbjct: 433 LVSEVLASNGSSSMASVCGSSLALMDA-----------GVPIKAPVAGVAMGLITGKEAG 481 Query: 171 ---AVCDLEYVEDSAAETDMNVVMTEDG 195 + D++ +ED+ + D V T G Sbjct: 482 QFSVLTDIQGLEDALGDMDFKVAGTTAG 509 >UniRef50_B8C7U5 Putative uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana CCMP1335 RepID=B8C7U5_THAPS Length = 659 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 57/233 (24%), Positives = 98/233 (42%), Gaps = 24/233 (10%) Query: 1 MRPAGRSNNQVRPVTLTRN-YTKHAEGSVLVEFGDTKVLCTASI---EEGVPRFLK-GQG 55 +R GR N VRP++ T + GS G+T+V+CTASI +GVP Sbjct: 267 LRADGRGTNAVRPISATTPIFPDCVHGSSQFSRGETQVICTASIGAPSDGVPHASPYSDS 326 Query: 56 QGWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLD 115 ++ ++ T +A + G ++ + L D + + L Sbjct: 327 SAFLHYDFPDFSTGTVKSKGESSANRRAIGHGNLAEKAVLPVLPNIHDFP----YAVRLT 382 Query: 116 CDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV--NGEAVC 173 C+V ++G + A+ G+ +AL+DA P+ VA VSVG+ + + Sbjct: 383 CEVTSSNGSSSMAAACGSTLALLDA-----------GVPLVSPVAGVSVGLTPDSKTLLL 431 Query: 174 DLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESN 226 D+ ED + D V T G ++ +Q + P T + + L+LA+ N Sbjct: 432 DITGTEDHYGDMDFKVCGTSGG-VLSMQLDVK-NPVTMKVIASALSLAKDGRN 482 >UniRef50_A8XLU8 Putative uncharacterized protein n=2 Tax=Caenorhabditis briggsae RepID=A8XLU8_CAEBR Length = 802 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/215 (23%), Positives = 87/215 (40%), Gaps = 39/215 (18%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIE--------EGVPRFLK 52 +R GR RP+ + + K G + + G T+V+ T + + + V + L Sbjct: 335 IRCDGRRPTDFRPIRIQVDMYKKLHGCSMFQRGQTQVMSTVTFDSPTAAFHPDSVAQLLG 394 Query: 53 GQGQGWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGE--- 109 Q + Y +T+ G R++ +R I A LK L Sbjct: 395 SQRKKSFMLHYEFPSFATND-------IGVSASRSLN-RREIGHGALAEKALKPLFPTGF 446 Query: 110 -FTITLDCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVN 168 + + L C VL+++G + AS+ G +AL DA PMK A V++G+++ Sbjct: 447 PYAVRLACQVLESNGSSSMASVCGGSLALYDA-----------GVPMKNAAAGVAIGLIS 495 Query: 169 GEAVCDLEY--------VEDSAAETDMNVVMTEDG 195 E + Y +ED A + D + T++G Sbjct: 496 DEKEPETNYKVLTDILGIEDYAGDMDFKIAGTKNG 530 >UniRef50_C0R0E0 Polyribonucleotide nucleotidyltransferase n=2 Tax=Brachyspira RepID=PNP_BRAHW Length = 712 Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/203 (22%), Positives = 84/203 (41%), Gaps = 23/203 (11%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQ 56 MRP GR+ +++RP+T N GS L G T+ L ++ + + + G+ Sbjct: 312 MRPDGRALDEIRPITTMTNLIPRVHGSALFTRGQTQCLSIVTLGSEKDAQLMDDIYGKEN 371 Query: 57 GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 Y P S G G R + L R+ A + K +TI + Sbjct: 372 KTFMLHYNFPPFSV----GEVGRYGAPGRREIGHGNLAERSFNAVLPPKDKFPYTIRVVA 427 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVN----GEAV 172 ++L+++G + A+I + ++L+ A P+ VA +++G+ + + Sbjct: 428 EILESNGSSSMATICASTMSLLSA-----------GVPLNASVAGIAMGLATYKDGYKIL 476 Query: 173 CDLEYVEDSAAETDMNVVMTEDG 195 D++ VED + D V T G Sbjct: 477 TDIQGVEDHLGDMDFKVAGTRKG 499 >UniRef50_C7N5E6 Polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) n=2 Tax=Coriobacteriaceae RepID=C7N5E6_SLAHD Length = 743 Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/203 (23%), Positives = 90/203 (44%), Gaps = 25/203 (12%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVL--CTASIEEGVPRFL---KGQGQ 56 R GR+ +++RP+ + Y GS L + G T+ L CT + R G+ Sbjct: 315 RADGRAADEIRPLYIRPGYLPRVHGSGLFQRGQTQALSVCTLGLLNEAQRLDTIDPATGK 374 Query: 57 GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 ++ +Y P T A K ++ G +R I L + + + I + Sbjct: 375 RYMH-QYNFPPYCTGEVGRMGAPKRREVGHGALAERAILPVLPSEDEFP----YAIRVVS 429 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGE----AV 172 ++L+++G + AS G+C+AL+DA P+K V+ +++G++ E + Sbjct: 430 EILESNGSSSMASTCGSCLALMDA-----------GVPIKAPVSGIAMGLIKEEDGVVIL 478 Query: 173 CDLEYVEDSAAETDMNVVMTEDG 195 D++ +ED + D V T +G Sbjct: 479 SDIQGLEDFLGDMDFKVTGTANG 501 >UniRef50_Q1IQ54 Polyribonucleotide nucleotidyltransferase n=96 Tax=Bacteria RepID=PNP_ACIBL Length = 815 Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 49/202 (24%), Positives = 87/202 (43%), Gaps = 23/202 (11%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEG--VPRF--LKGQGQG 57 RP GR+ +Q+R + + + GS + G+T+ L T ++ G + R +G+ + Sbjct: 318 RPDGRAFDQIRQIWIEVDVLPRTHGSAVFTRGETQALVTTTLGTGDDMQRMEGFEGEAKK 377 Query: 58 WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCD 117 Y P S A G R + L RAL A + + + + + D Sbjct: 378 RFMLHYNFPPFSVGEVAFLRGA----GRREIGHGALAERALSAVLPSEDKWPYAMRVVSD 433 Query: 118 VLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV----NGEAVC 173 +L+++G + ASI G ++L+DA P+K VA +++G+V + + Sbjct: 434 ILESNGSSSMASICGGSLSLMDA-----------GVPLKAPVAGIAMGLVKEGDDYAILT 482 Query: 174 DLEYVEDSAAETDMNVVMTEDG 195 D+ ED + D V T G Sbjct: 483 DIAGAEDHYGDMDFKVAGTTQG 504 >UniRef50_Q2GJV5 Polyribonucleotide nucleotidyltransferase n=138 Tax=cellular organisms RepID=PNP_ANAPZ Length = 838 Score = 50.4 bits (119), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 48/202 (23%), Positives = 87/202 (43%), Gaps = 23/202 (11%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQG 57 R GR+ +Q+R + + + A GS L GDT+ L ++ +E + G + Sbjct: 323 RIDGRAYDQIRNIEIEVDLISKAHGSALFTRGDTQALVITALGTPQDEQIVDGFDGDKRE 382 Query: 58 WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCD 117 Y P + +A G R + +L RA+ + KA +TI + + Sbjct: 383 RFLLHYNFPPYAVGEASALRPP----GRREIGHGKLAWRAIHPVLPSKADFPYTIRVVSE 438 Query: 118 VLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVN-GEAVCDLE 176 + ++DG + A++ GA +AL+D P+K VA +++G++ G+ L Sbjct: 439 ITESDGSSSMATVCGASLALMDT-----------GVPLKSSVAGIAMGLIKEGDRYAILS 487 Query: 177 YV---EDSAAETDMNVVMTEDG 195 + ED + D V T +G Sbjct: 488 DILGDEDYLGDMDFKVAGTREG 509 >UniRef50_A9A5D0 3' exoribonuclease n=4 Tax=Thaumarchaeota RepID=A9A5D0_NITMS Length = 272 Score = 50.1 bits (118), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 58/233 (24%), Positives = 97/233 (41%), Gaps = 28/233 (12%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR+ ++ R V++ N A GS V GDT+V+C I+ P F +G Sbjct: 24 RVDGRALDESREVSIETNAIPKANGSARVRLGDTEVVCGVKIQPDRP-FPDTGDKGLFIC 82 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAA--VDLKAL------GEFTIT 113 +LP S T G G +E+ R++ R +R + +D+ L + Sbjct: 83 TAELLPLSHPT-----VETGPPGPEVIELARVVDRGIRESHMIDVSQLVIEKDKSVIGVF 137 Query: 114 LDCDVLQADGGTRTASITGACVAL----------VDALQKLVENGKLKTNPMKGMVAAVS 163 D V+ DG A A AL VD LVE ++ P+ + +V+ Sbjct: 138 ADNVVVDYDGNLFDACSYAATAALLSSKSPKWNWVDDAPALVEGEEVDV-PITTIPVSVT 196 Query: 164 VGIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQ-GTAEGEPFTHEELL 215 +G + + D E ++ + + + DG I +Q G +G FT +E++ Sbjct: 197 MGKIGNHIIVDPNGDEWASMDARITITSDSDGNICALQKGGDDG--FTQDEIV 247 >UniRef50_C3Z2F7 Putative uncharacterized protein (Fragment) n=4 Tax=Coelomata RepID=C3Z2F7_BRAFL Length = 723 Score = 50.1 bits (118), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 57/199 (28%), Positives = 88/199 (44%), Gaps = 32/199 (16%) Query: 17 TRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEY-------GMLPRS 69 T + + A+G +VE GDT + TA + P G +T +Y G +P + Sbjct: 18 TGKFARFADGCAVVEIGDTSAMVTA-VSRTRP---SSAGFLPLTVDYRQKAAAAGRIP-T 72 Query: 70 THTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADG--GTRT 127 TH R RE A Q R + + RLI R++R + E + ++L DG Sbjct: 73 THLR--RELA---QTDREILVSRLIDRSIRPLFPAGYMYETQVI--SNLLAVDGVNDPDI 125 Query: 128 ASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDM 187 ASI GA AL L P G + AV VGIV+ E V + + S ++ ++ Sbjct: 126 ASINGASTALA-----------LSDCPWNGPIGAVRVGIVDDEYVINPTRRQLSRSKLNL 174 Query: 188 NVVMTEDGRIIEVQGTAEG 206 V E ++ ++G+AE Sbjct: 175 VVTGAERNLVVMLEGSAEN 193 Score = 40.4 bits (93), Expect = 0.041, Method: Compositional matrix adjust. Identities = 50/217 (23%), Positives = 85/217 (39%), Gaps = 49/217 (22%) Query: 5 GRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIE--------EGVPRFLKGQGQ 56 GR +R ++ + K GS L + G T+VL T + + + + L G Q Sbjct: 319 GRDMTSLRDISCDVDLYKPLHGSALFQRGQTQVLSTVTFDSKQASLKMDPIAEILGGVKQ 378 Query: 57 GWITAEYGMLPRSTH------TRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEF 110 Y P +T+ + + RE G L AL+ V + F Sbjct: 379 KDFMLHYVFPPYATNETGRVSSNSRRELGHGA----------LAENALKPVV--PSDFPF 426 Query: 111 TITLDCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV--- 167 TI L +VL+++G + AS +AL+DA P+ VA V++G+V Sbjct: 427 TIRLTAEVLESNGSSSMASACSGSLALMDA-----------GVPISSPVAGVAIGLVTRT 475 Query: 168 ---------NGEAVCDLEYVEDSAAETDMNVVMTEDG 195 + + + D+ +ED + D + T+ G Sbjct: 476 DPNNPTEIQDYKLLTDILGIEDYMGDMDFKMAGTKKG 512 >UniRef50_B7IE23 Polyribonucleotide nucleotidyltransferase n=3 Tax=Bacteria RepID=PNP_THEAB Length = 697 Score = 50.1 bits (118), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 48/203 (23%), Positives = 88/203 (43%), Gaps = 23/203 (11%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVL----CTASIEEGVPRFLKGQGQ 56 +R GR +++RP+T GS L G+T+ L A +EE + + +G Sbjct: 320 IRADGRKVDEIRPITCEVGVLPRTHGSALFTRGETQSLGIVTLGAPMEEQIVDTIMEEGT 379 Query: 57 GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 Y P S G R + L RAL+A V + + + + Sbjct: 380 KRFILHYNFPPFSVGEVKPLRGP----GRREIGHGHLAERALKAVVPSEEEFPYVVRVVS 435 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV--NGEAVC- 173 ++L+++G + A++ +AL+DA P++ VA V++G++ +G+ V Sbjct: 436 EILESNGSSSMATVCSGSLALMDA-----------GVPIRTHVAGVAMGLIIEDGQEVVL 484 Query: 174 -DLEYVEDSAAETDMNVVMTEDG 195 D++ +ED + D V T +G Sbjct: 485 TDIQGLEDHWGDMDFKVAGTRNG 507 Score = 43.5 bits (101), Expect = 0.006, Method: Compositional matrix adjust. Identities = 58/212 (27%), Positives = 90/212 (42%), Gaps = 38/212 (17%) Query: 22 KHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEY-------GMLPRSTHTRN 74 K + GSV V+FGD+ VL TA+I + R ++G +T EY G +P R Sbjct: 24 KQSAGSVWVQFGDSVVLATANISD---RTIEGVDFVPLTVEYQEKFYAAGKIPGGFIKRE 80 Query: 75 AREAAKGKQGGRTME--IQRLIARALRAAVDLKALGEFTITLDCDVLQADGGT--RTASI 130 + + R ++ I+ L + LR V L VL DG T I Sbjct: 81 GKPSESAILSARLIDRPIRPLFPKYLRNDVQLI----------VTVLSVDGNTPPDVTGI 130 Query: 131 TGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNVV 190 A +AL + P +G+VA V +G V+G+ V + + D+ V Sbjct: 131 IAASLAL-----------NISKIPFEGIVAGVRLGYVDGKFVVFPTEEQLEKSRLDIVVA 179 Query: 191 MTEDGRIIEVQGTAEGEPFTHEELLILLALAR 222 ++D I V+G E + T EE++ L +A Sbjct: 180 GSKDA-ITMVEG--EAKEVTEEEMVNALMVAH 208 >UniRef50_D0NP71 Exosome complex exonuclease MTR3-like protein n=1 Tax=Phytophthora infestans T30-4 RepID=D0NP71_PHYIN Length = 252 Score = 49.7 bits (117), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 52/171 (30%), Positives = 72/171 (42%), Gaps = 20/171 (11%) Query: 7 SNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTAS---IEEGVPRFLKGQGQGWITAEY 63 S++++R + A GS VE G T+VLC + R GQ +Y Sbjct: 33 SSDEMRRPFMQLGAVSGAAGSAYVELGRTRVLCAVYGPRTDTRARREFSKDGQLVCDVKY 92 Query: 64 GMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADG 123 TR R Q ME+ ++ AL AV L L + I++ +L+ DG Sbjct: 93 APFADKL-TRRER-----GQDPDEMELSAIVEEALAPAVMLHKLPKCIISVFVTILEDDG 146 Query: 124 GTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCD 174 G A++ A +AL DA VE M +V A S GIVNG V D Sbjct: 147 GVLAAALNCASLALADA---AVE--------MYDVVTASSAGIVNGSVVLD 186 >UniRef50_D2L1T8 Polyribonucleotide nucleotidyltransferase n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L1T8_9DELT Length = 762 Score = 49.7 bits (117), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 23/203 (11%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQ 56 +R GR VRP+ + GS L G+TK LC A++ +E L G+ Sbjct: 320 IRLDGRDTKSVRPIGIQVGVLPRTHGSTLFARGETKALCVATLGSTGDEQKIETLNGETY 379 Query: 57 GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 Y P + G +R + L + FT+ + Sbjct: 380 KRFMLHYNFPPYCVGEVKMLRGPSRRDIGHGALAERSVLPVLPGPEEFP----FTMRVVS 435 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVN-GE---AV 172 V++++G + AS+ GA +AL+DA P+K VA +++G++ G+ + Sbjct: 436 QVMESNGSSSMASVCGASLALMDA-----------GVPIKQPVAGIAMGLIKEGDDFLIL 484 Query: 173 CDLEYVEDSAAETDMNVVMTEDG 195 D+ ED+ + D V T DG Sbjct: 485 TDILGDEDAMGDMDFKVAGTADG 507 >UniRef50_A7GX79 Polyribonucleotide nucleotidyltransferase n=17 Tax=Epsilonproteobacteria RepID=PNP_CAMC5 Length = 735 Score = 49.7 bits (117), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 56/205 (27%), Positives = 96/205 (46%), Gaps = 27/205 (13%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI-EEGVPRFLKGQGQGWI 59 +R GR+ ++VRP+++ N +A GS L G T+ L A++ +G + + Sbjct: 343 VRADGRALDEVRPISIETNVLPNAHGSCLFTRGQTQALVVATLGTDGDAQMYDILTEKTA 402 Query: 60 TAEYGMLPRSTHTRNAREAAKGKQGG-RTMEIQRLIARALRAAVDLKALGEFTITLDCDV 118 E M + + EA+ K G R + L RAL ++D+ + +TI L ++ Sbjct: 403 LIEKFMFNYNFPGFSVGEASPLKAPGRRELGHGNLAKRALAPSIDINS--PYTIRLVSEI 460 Query: 119 LQADGGTRTASITGACVAL----VDALQKLVENGKLKTNPMKGMVAAVSVGIV---NGEA 171 L+++G + AS+ G +AL VD QKL VA V++G++ + A Sbjct: 461 LESNGSSSMASVCGGALALRAAGVDT-QKL--------------VAGVAMGLIFEGDKHA 505 Query: 172 VC-DLEYVEDSAAETDMNVVMTEDG 195 V D+ +ED + D V + DG Sbjct: 506 VLTDIMGLEDHDGDMDFKVAGSSDG 530 >UniRef50_Q7V606 Polyribonucleotide nucleotidyltransferase n=50 Tax=cellular organisms RepID=PNP_PROMM Length = 723 Score = 49.3 bits (116), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 52/204 (25%), Positives = 91/204 (44%), Gaps = 32/204 (15%) Query: 5 GRSNNQVRPVTLTRN-YTKHAEGSVLVEFGDTKVLCTASIEEGVPR-------FLKGQGQ 56 GR ++VRP++ K GS L + G T+VL TA++ G P G + Sbjct: 328 GRKLDEVRPISSAAGVLPKRVHGSGLFQRGLTQVLSTATL--GTPSDAQEMDDLNPGPEK 385 Query: 57 GWITAEYGMLPRST-HTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLD 115 ++ Y P S TR R + + G + L RA+ + K + + + Sbjct: 386 TYL-HHYNFPPYSVGETRPMRSPGRREVGHGS-----LAERAIIPVLPPKDSFPYVLRVV 439 Query: 116 CDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEA---- 171 +VL ++G T S+ G+ +AL+DA P+K V+ ++G++ +A Sbjct: 440 SEVLSSNGSTSMGSVCGSTLALMDA-----------GVPLKAPVSGAAMGLIKEDAEIRI 488 Query: 172 VCDLEYVEDSAAETDMNVVMTEDG 195 + D++ +ED + D V T+DG Sbjct: 489 LTDIQGIEDFLGDMDFKVAGTKDG 512 Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 54/192 (28%), Positives = 80/192 (41%), Gaps = 34/192 (17%) Query: 17 TRNYTKHAEGSVLVEFGDTKVLCTASIE---EGVPRFLKGQGQGWITAEY-------GML 66 T Y A GSV++E GDT VL TA+ EG+ FL + +Y G + Sbjct: 19 TGRYAPQAGGSVMMECGDTAVLVTATRSTGREGI-DFLP------LICDYEERLYAAGRI 71 Query: 67 PRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTR 126 P S R +G+ R I RLI R +R + I C L Sbjct: 72 PGSFMRR------EGRPPERATLIARLIDRPMRPLFPSWMRDDLQIVATCLSLDERVPAD 125 Query: 127 TASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETD 186 ++TGA +A + L + P +G +AAV VG++ + V + Y E + D Sbjct: 126 VLAVTGASMATL-----------LASIPFQGPMAAVRVGLLGDDFVLNPSYREIERGDLD 174 Query: 187 MNVVMTEDGRII 198 + V T DG ++ Sbjct: 175 LVVAGTPDGVVM 186 >UniRef50_UPI0000D569CA PREDICTED: similar to exosomal 3-5 exoribonuclease complex subunit Rrp41-like protein n=3 Tax=Endopterygota RepID=UPI0000D569CA Length = 282 Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 70/173 (40%), Gaps = 16/173 (9%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR++ + R + L A+GS +E TKV+ + +P +G I Sbjct: 42 RADGRTSTEHRKIFLKTGVVSQAKGSAYIELDQTKVIVSVFDPREIPNKTDYSSKGEIYC 101 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQA 121 E+ P S H R + Q + ++ +AL +AV F + + VL Sbjct: 102 EFKFAPFSCHKRRLHQ-----QDAEEQQFSAIMKQALESAVFRHEFPNFQVDIYAMVLHN 156 Query: 122 DGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCD 174 DG +A+IT A VAL A PM ++ +V++ + + D Sbjct: 157 DGAALSAAITAAGVALAHA-----------GIPMYDLITSVTLAVQGNHLLVD 198 >UniRef50_B9E1K8 Polyribonucleotide nucleotidyltransferase n=15 Tax=Clostridiales RepID=PNP_CLOK1 Length = 708 Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 54/208 (25%), Positives = 88/208 (42%), Gaps = 33/208 (15%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR ++VRP++ + A G+ L G T+V+ + L G I Sbjct: 312 RVDGREFDEVRPISCEVGFLPRAHGTGLFTRGLTQVMTVVT--------LGSLGDVQILD 363 Query: 62 EYGM--LPRSTHTRNAREAAKGK------QGGRTMEIQRLIARALRAAVDLKALGEFTIT 113 G+ R H N + G+ G R + L +AL + ++ +TI Sbjct: 364 GVGLEDSKRYMHHYNFPSYSTGEVRPLRGPGRREIGHGALAEKALEPLIPMEEQFPYTIR 423 Query: 114 LDCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNG---- 169 L +VL ++G T ASI G+ +AL+DA P+K A +++G+V Sbjct: 424 LVSEVLSSNGSTSQASICGSTLALLDA-----------GVPIKRPAAGIAMGLVTSEDLS 472 Query: 170 --EAVCDLEYVEDSAAETDMNVVMTEDG 195 E + D++ +ED + D V TE G Sbjct: 473 QEEILTDIQGLEDFFGDMDFKVGGTEKG 500 >UniRef50_O26778 Probable exosome complex exonuclease 2 n=5 Tax=Methanobacteriaceae RepID=ECX2_METTH Length = 271 Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 53/237 (22%), Positives = 102/237 (43%), Gaps = 24/237 (10%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GRS ++ R +++ AEGS V+ G+T+++ + G P F G I Sbjct: 25 RIDGRSLHEFRDISIETGVISKAEGSSRVKLGNTQIIVGVKPQIGEP-FPDTPEMGVILT 83 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAA--VDLKAL------GEFTIT 113 +LP ++ T G R++E+ R++ R +R + +DL+ L + + Sbjct: 84 NSELLPMASPTFEP-----GPPDERSVELSRVVDRCIRESRMIDLEKLCIIEGSKVWMLF 138 Query: 114 LDCDVLQADGG---------TRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSV 164 LD ++ DG T A V+ + ++ K++ P+ + Sbjct: 139 LDLHIIDYDGNLFDAAVLATVAALLDTRIPAAEVEDGEVVINREKMQPLPVNRKALMCTF 198 Query: 165 GIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALA 221 + E V D E+ +++ +TE+G I +Q EG P T +++L +++A Sbjct: 199 AKIGNEIVLDPSLEEEDILTARISIGVTEEGSICAMQKGGEG-PLTRDDVLKAVSIA 254 >UniRef50_B0BXR0 Polyribonucleotide nucleotidyltransferase n=20 Tax=Alphaproteobacteria RepID=PNP_RICRO Length = 748 Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 56/204 (27%), Positives = 84/204 (41%), Gaps = 46/204 (22%) Query: 8 NNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQGWITAEY 63 N QV ++ T + A+G+V V+ G++ +LCTA + +EG+ Sbjct: 12 NGQVLELS-TGKIARQADGAVTVKMGNSVLLCTAVVANKAKEGI---------------- 54 Query: 64 GMLPRSTHTRNAREAA----------KGKQGGRTMEIQRLIARALRAAVDLKALGEFTIT 113 G LP + + R AA +GK R + + RLI R +R + E +T Sbjct: 55 GFLPLTINYREMAYAAGKIPGGFFKHEGKPSDREVLVSRLIDRPIRPLFHPAFVNETHVT 114 Query: 114 LDCDVLQADGGTRT--ASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEA 171 C VL D T +I GA AL L P +VAA VG++NGE Sbjct: 115 --CSVLSYDPETPVDILAIIGASAAL-----------SLSPAPYLEIVAASKVGLINGEF 161 Query: 172 VCDLEYVEDSAAETDMNVVMTEDG 195 V + ++ D+ V T D Sbjct: 162 VLNPTLALLKTSQLDLVVAGTSDS 185 Score = 42.4 bits (98), Expect = 0.011, Method: Compositional matrix adjust. Identities = 46/202 (22%), Positives = 86/202 (42%), Gaps = 23/202 (11%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCT----ASIEEGVPRFLKGQGQG 57 R GRS +R + A GS L G+T+ L + S++E + L+G+ + Sbjct: 316 RIDGRSTTDIRQIACEIGLLPSAHGSALFTRGETQSLVSTTFGTSLDEQIVDSLEGEYKE 375 Query: 58 WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCD 117 Y P S + +A ++ G +L RA+ + K ++I + + Sbjct: 376 RFMLNYIFPPYSVNEAMPMKAPSRREVGHG----KLAWRAINPILPNKVQFPYSIRVVAE 431 Query: 118 VLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV----NGEAVC 173 +++G + A++ G+ +AL+ A P+K VA +++G+V N + Sbjct: 432 TTESNGSSSMATVCGSSLALMYA-----------GVPIKAPVAGIAMGLVKEGKNFAVLS 480 Query: 174 DLEYVEDSAAETDMNVVMTEDG 195 D+ ED + D V T +G Sbjct: 481 DILGDEDYFGDMDFKVAGTGEG 502 >UniRef50_Q1J1D0 Polyribonucleotide nucleotidyltransferase n=6 Tax=Deinococci RepID=PNP_DEIGD Length = 721 Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 54/206 (26%), Positives = 93/206 (45%), Gaps = 29/206 (14%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQ 56 +R GR++ VRP+ + A GS + G+T+VL ++ +E + L G+ Sbjct: 318 LRADGRNSKTVRPIWIEARPLPRAHGSAIFTRGETQVLGVTTLGTERDELLVDNLTGETN 377 Query: 57 GWITAEYGMLPRSTHTRNAREAAK-GKQGGRTMEIQRLIARALRAAVDLKALGEFTITLD 115 Y P ST E + G Q R + L RA+RA L A +F + Sbjct: 378 DRFLLHYNFPPYSTG-----EVKRVGGQSRREVGHGNLAKRAIRAV--LPAFDDFPYVIR 430 Query: 116 C--DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV-NGEA- 171 +VL+++G + A++ ++L+DA P++ VA V++G+V GE Sbjct: 431 VVGEVLESNGSSSMATVCAGTLSLMDA-----------GVPIQAPVAGVAMGLVMEGEQY 479 Query: 172 --VCDLEYVEDSAAETDMNVVMTEDG 195 + D+ +ED+ + D V T +G Sbjct: 480 RILTDILGLEDALGDMDFKVCGTAEG 505 >UniRef50_Q2NEX4 Putative exosome complex, exonuclease 2 subunit n=1 Tax=Methanosphaera stadtmanae DSM 3091 RepID=Q2NEX4_METST Length = 265 Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 51/230 (22%), Positives = 94/230 (40%), Gaps = 24/230 (10%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R R ++ R +++ NY A+GS +V G T V+ + P F G I Sbjct: 22 RIDDRKFSEYRNISIKTNYIGKADGSAMVSIGCTTVIVGVKAQMTTP-FNNAPNSGIIIT 80 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAA--VDLKAL------GEFTIT 113 +L + +R G +EI R++ RA+R + VDL L + + Sbjct: 81 NTELLAIA-----SRNFEYGPPNKFAVEISRVVDRAIRESPVVDLDKLCVIEGSKSWKLH 135 Query: 114 LDCDVLQADGGTRTASITGACVALVDAL---------QKLVENGKLKTNPMKGMVAAVSV 164 +D ++ DG A+ GA AL+ + +++ L P+K +V Sbjct: 136 IDMYIVDFDGNIMDAACLGAICALLTTKIPTATSVNGEIVIDEENLTPLPIKNRSILCTV 195 Query: 165 GIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEEL 214 +N + + D +E+ ++ ++ EDG + +Q TH+E+ Sbjct: 196 VKINNQLIVDPSKIEEILMDSSVSFGFREDGSLCALQKCGLNT-LTHKEV 244 >UniRef50_UPI000186CF32 Exosome complex exonuclease RRP43, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186CF32 Length = 276 Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 14/132 (10%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +RP GR+ ++ RP+++ N +A+GS +V+ G+T V+C +E P+ + QG++ Sbjct: 22 VRPDGRALDECRPISINVNSFHNADGSAIVKIGNTAVVCGVKLELAKPK-AETPDQGYLI 80 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARAL--RAAVDLKALG------EFTI 112 + P + + G E + + L +DLKAL + I Sbjct: 81 PNVDLPPLCSG-----QYQPGPPCDYAQEATKFVNEILLESQCIDLKALCIVPDRLAWVI 135 Query: 113 TLDCDVLQADGG 124 LD L DG Sbjct: 136 YLDIICLNQDGN 147 >UniRef50_Q84T68 Os03g0854200 protein n=9 Tax=Magnoliophyta RepID=Q84T68_ORYSJ Length = 238 Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 49/191 (25%), Positives = 79/191 (41%), Gaps = 25/191 (13%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR+ NQ+RP + TRN A GS GDT VL A++ P KG+ + Sbjct: 5 RADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVL--AAVYGPKPGTRKGENPEKASI 62 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQA 121 E P + G+ G + E + + R L++ L T ++ V+ Sbjct: 63 EVVWKPMT-----------GQIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGN 111 Query: 122 DGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV-NGEAVCDLEYVED 180 DG +I C ALV A P+K + A+ G++ +GE + D E+ Sbjct: 112 DGSLLPCAINACCAALVFA-----------GIPLKHLAVAIGCGVLEDGEVILDTNKAEE 160 Query: 181 SAAETDMNVVM 191 ++ ++V Sbjct: 161 QQLKSFAHLVF 171 >UniRef50_A8PFJ3 3' exoribonuclease family, domain 1 containing protein n=1 Tax=Brugia malayi RepID=A8PFJ3_BRUMA Length = 277 Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/138 (26%), Positives = 65/138 (47%), Gaps = 12/138 (8%) Query: 9 NQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKG------QGQGWITAE 62 N R + + +G+V VEFG TK++C+ +G K +GQ ++ + Sbjct: 47 NTFRSIVMQTGVLHDQKGTVYVEFGSTKIICSV---DGPKEITKSADVDPTEGQIYVFLK 103 Query: 63 YGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQAD 122 ++ + + +A K+ R I+ I ALR+ V L+ + I ++ VL D Sbjct: 104 NISAESNSLSGSNSFSASNKESNR---IRNAIESALRSIVCLELFCKAQIDVEITVLNDD 160 Query: 123 GGTRTASITGACVALVDA 140 GG AS+ + +AL+D+ Sbjct: 161 GGVLAASLIASSLALIDS 178 >UniRef50_UPI00006CFE64 3'''' exoribonuclease family, domain 1 containing protein n=1 Tax=Tetrahymena thermophila RepID=UPI00006CFE64 Length = 240 Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/187 (22%), Positives = 81/187 (43%), Gaps = 17/187 (9%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 R GR N++R V + + EGS + G T+++C I+ + + + +G++ Sbjct: 11 FREDGRKKNELRKVDCILGFDQTVEGSCKLIQGLTEIVCL--IKGPHNKSTRRESEGFLN 68 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 +Y + P S R R+ +K + E + + + + + LG I + V+Q Sbjct: 69 VQYNVAPFSGTDR--RKISKFDKDWN--EFTENLRVSFESVILTEQLGSGEIDIIVSVIQ 124 Query: 121 ADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVED 180 ADG +++ +AL+DA PMK + +V +N E + D Y E Sbjct: 125 ADGSAKSSIFNAISLALMDA-----------GIPMKDFTVSSTVISLNSEILLDATYQEQ 173 Query: 181 SAAETDM 187 A ++ Sbjct: 174 KKASAEL 180 >UniRef50_Q2S1P1 Polyribonucleotide nucleotidyltransferase n=1 Tax=Salinibacter ruber DSM 13855 RepID=PNP_SALRD Length = 712 Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 48/203 (23%), Positives = 85/203 (41%), Gaps = 25/203 (12%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLC-----TASIEEGVPRFLKGQGQ 56 R GR VR + + Y GS + G+T+VL T+ + V + Sbjct: 322 RIDGRDQTDVRDLWMEVGYLPRVHGSAIFTRGETQVLGSITLGTSDDVQPVDEVFADTDK 381 Query: 57 GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 + Y P S + K ++ G +M L RALR + + +TI ++ Sbjct: 382 SFYL-HYRFPPFSVGEASYLRGPKRREIGHSM----LAERALRPVIPEQDEFPYTIRINA 436 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGE----AV 172 DV++++G + AS+ +AL+DA P++ VA +++G+V + + Sbjct: 437 DVMESNGSSSMASVCAGSLALMDA-----------GVPIEKPVAGIAMGLVQEDDETTVL 485 Query: 173 CDLEYVEDSAAETDMNVVMTEDG 195 D+ ED + D + T DG Sbjct: 486 TDILGQEDHLGDMDFKLTGTRDG 508 >UniRef50_Q0AYI2 Polyribonucleotide nucleotidyltransferase n=70 Tax=Bacteria RepID=PNP_SYNWW Length = 703 Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 56/213 (26%), Positives = 85/213 (39%), Gaps = 45/213 (21%) Query: 22 KHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQGWITAEY-------GMLPRST 70 + A G+ L+ +GDT VL TA+ EG+ F +T +Y G +P Sbjct: 24 QQANGAALMRYGDTVVLVTATAAKQPREGIDFF-------PLTVDYEEKQYAVGKIPGGF 76 Query: 71 HTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTASI 130 R R A+ R LI R +R E + ++ D +I Sbjct: 77 IKREGRATAQATLSAR------LIDRPIRPLFPKGFRNEIHVVATILSVEKDNAPDVTAI 130 Query: 131 TGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNVV 190 TGA VAL + P G VAAV VG+V+GE + + + ++ + V Sbjct: 131 TGASVAL-----------SISDIPFAGPVAAVIVGLVDGELIINPTVEQHQKSDLHLAVA 179 Query: 191 MTEDGRIIEVQGTAEGEP---------FTHEEL 214 T++ I+ V+G A P F HEE+ Sbjct: 180 GTKEA-IMMVEGGANEVPEETMRDAIFFAHEEI 211 Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust. Identities = 51/203 (25%), Positives = 90/203 (44%), Gaps = 25/203 (12%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQG 57 R GR +++R V+ + GS L G T+VL ++ EE L + + Sbjct: 313 RVDGRKLDEIRKVSCEVGFLPRPHGSGLFTRGQTQVLSVTTLGAISEEQRLDGLGIEEKK 372 Query: 58 WITAEYGMLPRST-HTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 Y P ST T+ R G R + L RAL A + + +TI + Sbjct: 373 RYIHHYNFPPYSTGETKPMR-----GPGRREIGHGALAERALLAVIPSEEEFPYTIRVVS 427 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVN-GE---AV 172 +VL+++G + S+ G+ ++L+ A P+K V+ +++G+V GE + Sbjct: 428 EVLESNGSSSMGSVCGSTLSLMHA-----------GVPIKAPVSGIAMGLVKEGERFAIM 476 Query: 173 CDLEYVEDSAAETDMNVVMTEDG 195 D++ +ED+ + D + TE G Sbjct: 477 SDIQGIEDALGDMDFKLAGTEKG 499 >UniRef50_B5E2A0 Polyribonucleotide nucleotidyltransferase n=202 Tax=Bacteria RepID=PNP_STRP4 Length = 737 Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 56/208 (26%), Positives = 93/208 (44%), Gaps = 33/208 (15%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEE-GVPRFLKGQGQGWI 59 +RP GR +++RP+ ++ GS L G T+ L ++ G + + G + Sbjct: 317 VRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDG-----L 371 Query: 60 TAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIA------RALRAAVDLKALGEF--T 111 EY R H N + + G+ G +R I RAL A L +L EF Sbjct: 372 DPEYKK--RFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERAL--AQVLPSLEEFPYA 427 Query: 112 ITLDCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV---- 167 I L +VL+++G + ASI +AL+ G + P+K VA +++G++ Sbjct: 428 IRLVAEVLESNGSSSQASICAGTLALM--------AGGV---PIKAPVAGIAMGLISDGN 476 Query: 168 NGEAVCDLEYVEDSAAETDMNVVMTEDG 195 N + D++ +ED + D V T DG Sbjct: 477 NYTVLTDIQGLEDHFGDMDFKVAGTRDG 504 >UniRef50_C4R4E4 3'-to-5' phosphorolytic exoribonuclease that is a subunit of the exosome n=1 Tax=Pichia pastoris GS115 RepID=C4R4E4_PICPG Length = 246 Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 47/181 (25%), Positives = 78/181 (43%), Gaps = 16/181 (8%) Query: 1 MRPAGRSNNQVRPVTLTRN-YTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWI 59 +R GR N++R N + A+GS VE G+TK++C + R +G + Sbjct: 9 LRVDGRRWNELRRFYCRINTHPIVADGSAYVEAGNTKIVCLLNGPHEPTRSQMNTQKGSL 68 Query: 60 TAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVL 119 + + P ST R R+ + + R E+ ++ V LK I ++ VL Sbjct: 69 DIKLHVSPFSTTER--RKVTRNDR--RIQELSTILKNTFEQVVILKNYPRTIIEVNVRVL 124 Query: 120 QADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVE 179 DGG A +ALVDA L + ++AVS G+ + + + DL +E Sbjct: 125 AQDGGLLAACCNAITLALVDAGIALYD-----------YISAVSAGVFDNQILLDLNRLE 173 Query: 180 D 180 + Sbjct: 174 E 174 >UniRef50_P46948 Exosome complex component SKI6 n=12 Tax=Saccharomycetaceae RepID=RRP41_YEAST Length = 246 Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 47/189 (24%), Positives = 81/189 (42%), Gaps = 20/189 (10%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHA-EGSVLVEFGDTKVLCTASIEEGVPRFLKGQ---GQ 56 +R GR N++R + N HA +GS +E G+ K++ + PR LK Q + Sbjct: 12 LRLDGRRWNELRRFESSINTHPHAADGSSYMEQGNNKIITLVKGPKE-PR-LKSQMDTSK 69 Query: 57 GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 + + + ++ R + K R +EIQ + R V L I ++ Sbjct: 70 ALLNVSVNI---TKFSKFERSKSSHKNERRVLEIQTSLVRMFEKNVMLNIYPRTVIDIEI 126 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLE 176 VL+ DGG + I G +AL+DA M ++ +SVG+ + + D Sbjct: 127 HVLEQDGGIMGSLINGITLALIDA-----------GISMFDYISGISVGLYDTTPLLDTN 175 Query: 177 YVEDSAAET 185 +E++A T Sbjct: 176 SLEENAMST 184 >UniRef50_UPI00006A4B1C PREDICTED: similar to LOC495942 protein n=1 Tax=Ciona intestinalis RepID=UPI00006A4B1C Length = 247 Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 46/184 (25%), Positives = 76/184 (41%), Gaps = 18/184 (9%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQ---GQGW 58 R GR +++R V A+GS +E G+TKVL ++ + + + Sbjct: 13 RFDGRKPSELRRVRCNMGVFTQADGSAYIEQGNTKVLAAIYGPHEASNNMRSRVCLDKCF 72 Query: 59 ITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDV 118 I E+ S+ R R ++G + G+ M I + AAV + I + V Sbjct: 73 INCEFSQAMFSSAERKKR--SRGDRKGKDMSAH--IKQTFEAAVRTQLYPRSQIDIYLQV 128 Query: 119 LQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYV 178 L +DG A + A +AL+DA MK V A S + ++ D+ +V Sbjct: 129 LHSDGSLYCACVNAATLALIDA-----------GIAMKDYVCACSASLTKETSLIDINHV 177 Query: 179 EDSA 182 E+ A Sbjct: 178 EELA 181 >UniRef50_B3EH06 Polyribonucleotide nucleotidyltransferase n=1 Tax=Chlorobium limicola DSM 245 RepID=PNP_CHLL2 Length = 736 Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 46/203 (22%), Positives = 85/203 (41%), Gaps = 25/203 (12%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI-----EEGVPRFLKGQGQ 56 R GR+ +VRP+++ A GS L G+T+ L T ++ + V + Sbjct: 335 RLDGRTLEEVRPISIELGIIPRAHGSALFTRGETQALVTITLGTKKDAQSVDNLTNNADK 394 Query: 57 GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 ++ Y P S G G R + L RA++ + +T+ + Sbjct: 395 KFML-HYNFPPFSV----GETGRIGSTGRREIGHGNLAERAIKMVAPPEQEFPYTVRIVS 449 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV----NGEAV 172 D+L+++G + AS+ G +AL+D P++ V+ +++G++ N + Sbjct: 450 DILESNGSSSMASVCGGTLALMDG-----------GVPIRKPVSGIAMGLIKEGSNYAVL 498 Query: 173 CDLEYVEDSAAETDMNVVMTEDG 195 D+ ED + D V T DG Sbjct: 499 SDILGNEDHLGDMDFKVSGTRDG 521 >UniRef50_A2RVK7 At4g27490 n=9 Tax=Magnoliophyta RepID=A2RVK7_ARATH Length = 256 Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 39/139 (28%), Positives = 62/139 (44%), Gaps = 8/139 (5%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 RP GR +Q RP L A GS EFG+TKV+ + PR K + + + Sbjct: 34 RPDGRGFHQCRPALLQTGAVSSASGSAYAEFGNTKVI----VSVFGPRESK---KAMVYS 86 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQA 121 + G L + N G QG E ++ +AL + ++ + T+ + VL++ Sbjct: 87 DVGRLNCNVSYTNFASPTLG-QGTDHKEYSSMLHKALEGVIMMETFPKTTVDVFALVLES 145 Query: 122 DGGTRTASITGACVALVDA 140 G + I+ A +AL DA Sbjct: 146 GGSDLSVLISCASLALADA 164 >UniRef50_Q8SYC8 RE67757p n=23 Tax=Coelomata RepID=Q8SYC8_DROME Length = 246 Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 9/141 (6%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKG-QGQGWI 59 +R GR +++R + + +GS +E G+TKVL P KG Q + I Sbjct: 13 LRLDGRRPHELRRIKCKLGVFEQPDGSAYMEQGNTKVLAAVY----GPHQAKGNQTESVI 68 Query: 60 TAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVL 119 +Y ST R R +G + +++E + + +AL AA+ + I + +VL Sbjct: 69 NCQYSQATFSTAERKNR--PRGDR--KSLEFKLYLQQALSAAIKSELYPRSQIDIYVEVL 124 Query: 120 QADGGTRTASITGACVALVDA 140 Q DG ++ A +AL+DA Sbjct: 125 QDDGANYAVALNAATLALIDA 145 >UniRef50_B5Y8I4 Polyribonucleotide nucleotidyltransferase n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=PNP_COPPD Length = 697 Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 50/202 (24%), Positives = 87/202 (43%), Gaps = 23/202 (11%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI-EEGVPRFLKGQGQ---G 57 R GR+ +++RP+ + GS L G T+VL T ++ +F+ G Sbjct: 316 RVDGRAFDEIRPLYAESSVLPKVHGSGLFIRGQTQVLSTVTLGSFSDVQFIDAIGLEEFK 375 Query: 58 WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCD 117 +Y P ST R ++ G L+ RAL + + + +TI + + Sbjct: 376 RFMHQYDFPPFSTGEVKPRRGPSRREIGHGA----LVERALSYLIPSEEVFPYTIRVVSE 431 Query: 118 VLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV--NGEAVC-- 173 VL+++G T AS + +AL+ A PM V +++G++ N E V Sbjct: 432 VLESNGSTSMASTCASSIALMSA-----------GVPMARHVGGIAMGLIEYNDENVVLT 480 Query: 174 DLEYVEDSAAETDMNVVMTEDG 195 D++ +ED + D V T +G Sbjct: 481 DIQGLEDHLGDMDFKVAGTREG 502 >UniRef50_A8MA85 3' exoribonuclease n=1 Tax=Caldivirga maquilingensis IC-167 RepID=A8MA85_CALMQ Length = 279 Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 64/147 (43%), Gaps = 14/147 (9%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 RP R +R +T+ K A+GS LV G+TKV+ E G P F +G + Sbjct: 26 RPDDRQLISMRDLTIRVGVIKTADGSALVNLGNTKVIAGIKFELGKP-FEDTPNEGNLIV 84 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAA--VDLKAL------GEFTIT 113 P + T G +EI R+I RALR + + L+ L +++ Sbjct: 85 NLETPPLAAPT-----FEPGPPDENAIEIARIIDRALRHSNYIPLRDLVIIPGKSVYSMW 139 Query: 114 LDCDVLQADGGTRTASITGACVALVDA 140 +D VL DG +S+ A A+ +A Sbjct: 140 VDIYVLNHDGNLIDSSMLAAVSAIANA 166 >UniRef50_Q1G2Y1 Chloroplast polyribonucleotide phosphorylase n=5 Tax=cellular organisms RepID=Q1G2Y1_CHLRE Length = 854 Score = 47.0 bits (110), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 50/208 (24%), Positives = 86/208 (41%), Gaps = 29/208 (13%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI-------EEGVPRFLKG 53 +R GR +RPVT GS L G+T+ +C A++ R G Sbjct: 415 VRADGRGVADIRPVTCRAGLLPRTHGSALFTRGETQSICVATLGSANDALRSDTMRKPDG 474 Query: 54 QG--QGWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFT 111 + G +Y P S+ R A G+ R + L RAL + A +T Sbjct: 475 EDPESGRFYLQY-HFPPSSVGETGRTGAPGR---RELGHGELAQRALAPILPDPAQFPYT 530 Query: 112 ITLDCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV---N 168 + ++ + +++G + AS+ G C+A++DA P+ VA +++G++ N Sbjct: 531 VRVESTITESNGSSSMASVCGGCLAMMDA-----------GVPIARPVAGIAMGLILESN 579 Query: 169 GE--AVCDLEYVEDSAAETDMNVVMTED 194 G + D+ ED+ + D V D Sbjct: 580 GRNAVLSDILGSEDALGDMDFKVAGDHD 607 >UniRef50_Q7UR95 Polyribonucleotide nucleotidyltransferase n=5 Tax=Planctomycetaceae RepID=PNP_RHOBA Length = 753 Score = 47.0 bits (110), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 48/203 (23%), Positives = 86/203 (42%), Gaps = 24/203 (11%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQG 57 RP GR +N +R + + GS L + G+T+ L T ++ +E L+ + Sbjct: 316 RPDGRDHNSLRAIHCETDLLPRVHGSALFQRGETQALITIALGTSRDEQRVDGLQDEYSK 375 Query: 58 WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCD 117 +Y S ++ G +R +A L +A D +TI + D Sbjct: 376 KFMLDYNFPSYSVGECRPIRGPGRREIGHGCLAERSVAPVLPSADDFP----YTIRVISD 431 Query: 118 VLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV-----NGEAV 172 + +++G + AS+ GA + L+ +G +NP VA +SVG+V N + Sbjct: 432 ITESNGSSSMASVCGATLG-------LMASGVPISNP----VAGISVGLVQDGPDNWCLI 480 Query: 173 CDLEYVEDSAAETDMNVVMTEDG 195 D+ ED + D + T++G Sbjct: 481 TDILGTEDHFGDMDFKIAGTQNG 503 >UniRef50_Q6P0I8 Exosome complex exonuclease MTR3 n=5 Tax=Euteleostomi RepID=EXOS6_DANRE Length = 271 Score = 47.0 bits (110), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 38/136 (27%), Positives = 59/136 (43%), Gaps = 6/136 (4%) Query: 6 RSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTA-SIEEGVPRFLKGQGQGWITAEYG 64 R N VRPV A+GS +E G+TK++C+ +E R G + ++ Sbjct: 37 RGNGDVRPVFARCGLVSQAKGSAYIEAGNTKIICSVYGPKETERRDETDMKTGRLVCDFR 96 Query: 65 MLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGG 124 + P S R A QG ++ + +LR V L I ++ VL+ DG Sbjct: 97 LAPFSCVKRGA-----WIQGSEERDLSATLMESLRPGVCLHRYPRSQIDVNVMVLENDGS 151 Query: 125 TRTASITGACVALVDA 140 ++T A +AL DA Sbjct: 152 VLAHAVTCASMALADA 167 >UniRef50_A8NCK3 Putative uncharacterized protein n=2 Tax=Agaricales RepID=A8NCK3_COPC7 Length = 274 Score = 46.6 bits (109), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 50/201 (24%), Positives = 81/201 (40%), Gaps = 16/201 (7%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTAS-IEEGVPRFLKGQGQGWI 59 R GR ++R +++ + A+GS L+ G T+VL + E R + I Sbjct: 27 FRSDGRRQYELRDLSIDLSRHGEADGSALISHGLTQVLVSVHGPREAKMRSHTFHDRANI 86 Query: 60 TAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVL 119 E + ST R R+ KG + R +E I V I + +L Sbjct: 87 NVEVTVASFSTGER--RKRLKGDK--RILEFAATIKSTFEPVVRTSLYPRSQIDIYIQIL 142 Query: 120 QADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVE 179 Q DGGT I G +AL++A PM V A+S G+ + + DL +E Sbjct: 143 QQDGGTLQTCINGTTLALINA-----------GIPMSDFVCAISGGVHSTSPMLDLTTLE 191 Query: 180 DSAAETDMNVVMTEDGRIIEV 200 ++ VM + +++ V Sbjct: 192 ENDVPHVTVAVMPKSKKVVLV 212 >UniRef50_B7GAV6 Predicted protein n=2 Tax=Bacillariophyta RepID=B7GAV6_PHATR Length = 274 Score = 46.2 bits (108), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 52/177 (29%), Positives = 73/177 (41%), Gaps = 16/177 (9%) Query: 1 MRPAGRSNNQVRP--VTLTRNYTKHAEGSVLVEFGDTKVLCTAS-IEEGVPRFLKGQGQG 57 +R GR +++R V ++ GS LVE G T VL T + + R + Q Sbjct: 16 LRNDGRKPHEIRRMRVQMSPLSVSTISGSALVEMGLTVVLATVRGPVDCLRRADENPDQA 75 Query: 58 WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCD 117 + P S+ R A K R +E ++ RA+ AA+ L + I L Sbjct: 76 VLDVTVQSAPFSSSAD--RRVANPKTDRRLIEASHMLKRAMEAAILLHLYPKSRIELVVS 133 Query: 118 VLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCD 174 VL DGG A+I A +AL+DA PMK V A S G+ A D Sbjct: 134 VLADDGGRLCAAINAATLALMDA-----------GIPMKDFVCACSAGLPGTSATPD 179 >UniRef50_A8PXC4 Putative uncharacterized protein n=1 Tax=Malassezia globosa CBS 7966 RepID=A8PXC4_MALGO Length = 253 Score = 46.2 bits (108), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 13/125 (10%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQ---GQG 57 +RP GR + RP+ L A GS L+E G TK++C+ G PR ++G+ G+ Sbjct: 20 VRPDGRKAEEPRPLYLQTGIIPSASGSTLLESGHTKIVCSV---HG-PRQVRGRHYAGKA 75 Query: 58 WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCD 117 + ++ M P S R + + LI +AL A+ L L + +I + Sbjct: 76 EVNVQFEMAPFSEKERRSSRDTEAPVPA------ALIQQALLPAIRLDLLPKSSIDVHIT 129 Query: 118 VLQAD 122 VL +D Sbjct: 130 VLDSD 134 >UniRef50_Q0SM46 Polyribonucleotide nucleotidyltransferase n=24 Tax=Spirochaetaceae RepID=PNP_BORAP Length = 722 Score = 46.2 bits (108), Expect = 9e-04, Method: Composition-based stats. Identities = 47/203 (23%), Positives = 88/203 (43%), Gaps = 24/203 (11%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTA----SIEEGVPRFLKGQGQ 56 +R GR+ N++R + + GS L G+T+ L SI+E + + G + Sbjct: 315 IRTDGRTPNEIRDILAEVDILSRTHGSSLFTRGETQALAVTTLGTSIDEQIMDDIDGDKR 374 Query: 57 GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 Y P S E + G R + L RAL + + K +TI + Sbjct: 375 LNFMLHYNFPPFSVG-----ETGRLMTGRREIGHGHLAQRALESMIPGKNDFPYTIRVVS 429 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVN-GE---AV 172 ++L+++G + A++ ++L+ A P+K VA +++G+++ G+ + Sbjct: 430 EILESNGSSSMATVCAGSMSLMSA-----------GVPVKRQVAGIAMGLISEGDKYVVL 478 Query: 173 CDLEYVEDSAAETDMNVVMTEDG 195 D+ ED + D V TE+G Sbjct: 479 SDILGEEDHLGDMDFKVAGTENG 501 >UniRef50_C1M111 Exosome complex exonuclease rrp42 (Ribosomal rna processing protein 42), putative n=2 Tax=Schistosoma RepID=C1M111_SCHMA Length = 254 Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/149 (25%), Positives = 63/149 (42%), Gaps = 21/149 (14%) Query: 5 GRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYG 64 GR ++ RP+ + N HA GS + G+T ++C +E G P L +G I Sbjct: 3 GRGPSEYRPLEIETNILSHATGSASIRIGETFIVCCVKMEVGKPS-LTNTSEGRIEINVE 61 Query: 65 MLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGE-----------FTIT 113 P +TH N + A+ E++ + L++A LK + + I Sbjct: 62 CYPTATHRCNEKAAS---------ELEERLKTTLQSAYQLKFIDLSPLCIQRGRQCWVIY 112 Query: 114 LDCDVLQADGGTRTASITGACVALVDALQ 142 +D +L+ G AS AL++A Q Sbjct: 113 IDLLILEGAGNLLDASSLVVKAALLNATQ 141 >UniRef50_Q8GZQ3 Polynucleotide phosphorylase n=19 Tax=cellular organisms RepID=Q8GZQ3_ARATH Length = 922 Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust. Identities = 51/208 (24%), Positives = 88/208 (42%), Gaps = 28/208 (13%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI--EEGVPRFLKGQGQGWI 59 R GR+ +++RP+ A GS L G+T+ L ++ ++ R +G Sbjct: 447 RSDGRTLDEIRPINSRCGLLPRAHGSTLFTRGETQALAVVTLGDKQMAQRIDNLEGSDEY 506 Query: 60 TAEY--GMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCD 117 Y P S+ R A + R + L RAL + +TI ++ Sbjct: 507 KRFYLQYTFPPSSVGEVGRIGAPSR---REIGHGTLAERALETILPSDDDFPYTIRVEST 563 Query: 118 VLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV--------NG 169 V++++G + AS+ G C+AL DA P+K VA +++G+V +G Sbjct: 564 VIESNGSSSMASVCGGCLALQDA-----------GVPVKCSVAGIAMGMVWDTEEFGGDG 612 Query: 170 EA--VCDLEYVEDSAAETDMNVVMTEDG 195 + D+ ED++ + D V EDG Sbjct: 613 SPLILSDITGAEDASGDMDFKVAGNEDG 640 >UniRef50_Q9YC05 Probable exosome complex exonuclease 2 n=4 Tax=Desulfurococcales RepID=ECX2_AERPE Length = 276 Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 64/147 (43%), Gaps = 14/147 (9%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 RP R R V + + AEGS LV+ G T+V+ G P F QG +T Sbjct: 28 RPGDRDLKTPRNVKIETGIIEKAEGSALVKLGKTQVIAGVKAGVGAP-FKDTPNQGVLTV 86 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALR--AAVDLKAL----GE--FTIT 113 +P ++ G +E+ R++ R+LR AVDL++L GE + + Sbjct: 87 HAEFVPLASPVFEP-----GPPDENAIELARVVDRSLREVGAVDLESLVIRPGEKVWVLW 141 Query: 114 LDCDVLQADGGTRTASITGACVALVDA 140 +D ++ DG AS+ L+ A Sbjct: 142 VDLYIIDHDGNLFDASMLATMAVLLTA 168 >UniRef50_Q72ER6 Polyribonucleotide nucleotidyltransferase n=17 Tax=Deltaproteobacteria RepID=PNP_DESVH Length = 760 Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust. Identities = 47/198 (23%), Positives = 84/198 (42%), Gaps = 16/198 (8%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR VRP+ + A GS L G+TK L A++ G +T Sbjct: 322 RIDGRDTTTVRPILIEAGILPRAHGSALFARGETKSLVVATLGSSTDEQRMDSLTGDVTK 381 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQA 121 + ML + E + R + L +ALR + L FT+ + + +++ Sbjct: 382 RF-MLHYNFAPYCVGEVKPVRVSRREIGHGALAEKALRPILPLGEDFPFTLRVVAETMES 440 Query: 122 DGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVN-GE---AVCDLEY 177 +G + A++ G C++L+DA P+ VA V++G++ G+ + D+ Sbjct: 441 NGSSSMAAVCGGCLSLMDA-----------GVPITAPVAGVAMGLIKEGDQYVVLTDILG 489 Query: 178 VEDSAAETDMNVVMTEDG 195 ED+ + D + T +G Sbjct: 490 DEDALGDMDFKIAGTSEG 507 >UniRef50_C3XH48 Polyribonucleotide nucleotidyltransferase n=1 Tax=Helicobacter bilis ATCC 43879 RepID=C3XH48_9HELI Length = 734 Score = 45.4 bits (106), Expect = 0.001, Method: Composition-based stats. Identities = 51/207 (24%), Positives = 83/207 (40%), Gaps = 35/207 (16%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCT--------ASIEEGVPRFLKG 53 R GR+ ++R +++ N GS G T+ L T A +EG+ Sbjct: 353 RADGRALREIREISIESNLLPKTHGSACFTRGQTQALVTCTLGSQNDAQTQEGILT---- 408 Query: 54 QGQGWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTIT 113 QG+ I Y P S G R + L +A+ + V A TI Sbjct: 409 QGKSKIIFHYNFPPFSV----GEAYPIGASSRRELGHGNLALKAIESNV---ANTPHTIR 461 Query: 114 LDCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEA-- 171 L ++LQ++G + AS+ GA +AL+ A K M MVA +++G++ Sbjct: 462 LVSEILQSNGSSSMASVCGASLALLGADIK-----------MHNMVAGIAMGLIYESEER 510 Query: 172 ---VCDLEYVEDSAAETDMNVVMTEDG 195 + D+ +ED + D + E G Sbjct: 511 FAILSDIMGLEDFDGDMDFKIAGNEKG 537 >UniRef50_A6DU91 Polynucleotide phosphorylase/polyadenylase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DU91_9BACT Length = 696 Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust. Identities = 50/203 (24%), Positives = 83/203 (40%), Gaps = 27/203 (13%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEG----VPRFLKGQGQG 57 R GR +RP++ + GS L G+T+ L T ++ + ++G+ Sbjct: 315 RADGRGAEDLRPLSAENSLMPRTHGSALFARGETQALVTVTLGDAKAAQSAETIRGRYDK 374 Query: 58 WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCD 117 Y S A ++ G +R +A+ + A +T+ + + Sbjct: 375 TFYLHYNFPNFSVGECGRIMGAGNREIGHGNLAERALAKMMPADY------PYTVRVISE 428 Query: 118 VLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEA-----V 172 V+ ++G T ASI G +AL+DA P+K VA +SVG+V EA + Sbjct: 429 VMGSNGSTSMASICGGSLALMDA-----------GVPLKKAVAGISVGLVQ-EADKYVMI 476 Query: 173 CDLEYVEDSAAETDMNVVMTEDG 195 D+ ED + D V T DG Sbjct: 477 TDILGSEDHYGDMDFKVAGTRDG 499 >UniRef50_UPI00005A29C6 PREDICTED: similar to Exosome complex exonuclease RRP41 (Ribosomal RNA processing protein 41) (Exosome component 4) (p12A) isoform 3 n=1 Tax=Canis lupus familiaris RepID=UPI00005A29C6 Length = 226 Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 11/71 (15%) Query: 112 ITLDCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEA 171 I + VLQADGGT A + A +A++DA PM+ V A S G V+ A Sbjct: 102 IDIYVQVLQADGGTYAACVNAATLAVLDA-----------GIPMRDFVCACSAGFVDNTA 150 Query: 172 VCDLEYVEDSA 182 + DL +VE++A Sbjct: 151 LADLSHVEEAA 161 >UniRef50_UPI000190509B ribonuclease PH n=1 Tax=Rhizobium etli GR56 RepID=UPI000190509B Length = 61 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 20/37 (54%), Positives = 28/37 (75%) Query: 165 GIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQ 201 G+ +AV DL+Y+EDS+AETD N VMT G I+E++ Sbjct: 10 GVFASQAVIDLDYLEDSSAETDANFVMTGAGGIVEIR 46 >UniRef50_UPI000169499B ribonuclease PH n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI000169499B Length = 71 Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/41 (53%), Positives = 27/41 (65%) Query: 181 SAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALA 221 S A DMNVVMT G +EVQGT E PF+ ++L +L LA Sbjct: 1 SQAHVDMNVVMTGRGHFVEVQGTGEESPFSKDDLDRMLGLA 41 >UniRef50_B3EMN6 Polyribonucleotide nucleotidyltransferase n=12 Tax=Bacteria RepID=PNP_CHLPB Length = 734 Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust. Identities = 49/201 (24%), Positives = 82/201 (40%), Gaps = 21/201 (10%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQG 57 R GR +VRP+++ A GS L G+T+ L ++ + + L + Sbjct: 332 RLDGRKLEEVRPISIELGLIPRAHGSALFTRGETQALVVLTLGTKKDAQMIDTLLDDTEK 391 Query: 58 WITAEYGMLPRSTHTRNAREAAKGKQGG---RTMEIQRLIARALRAAVDLKALGEFTITL 114 Y P S G+ GG R + L RA++ V ++ +TI L Sbjct: 392 RFMLHYNFPPFSV-------GETGRVGGVGRREIGHGNLAERAVKKVVPSESEFPYTIRL 444 Query: 115 DCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCD 174 ++L+++G + AS+ GA +A +D G T P+ G+ + N + D Sbjct: 445 VSEILESNGSSSMASVCGATLAAMDG-------GVPLTKPVSGIAMGLIKEDDNYAVLSD 497 Query: 175 LEYVEDSAAETDMNVVMTEDG 195 + ED + D V T DG Sbjct: 498 ILGNEDHLGDMDFKVAGTRDG 518 >UniRef50_B6AK41 3' exoribonuclease family protein, putative n=1 Tax=Cryptosporidium muris RN66 RepID=B6AK41_9CRYT Length = 250 Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust. Identities = 41/144 (28%), Positives = 67/144 (46%), Gaps = 12/144 (8%) Query: 1 MRPAGRSNNQVRPVT--LTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGW 58 R GR N++R ++ ++ + ++ SV E G TK++ SI +P L Q Sbjct: 16 FRIDGRRFNEIRRISCKISNGTSNLSDSSVYYEQGQTKLI--TSICGPIP-LLNSSSQSG 72 Query: 59 IT--AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 I + M P T R R GK E +I R +A+ + + I ++ Sbjct: 73 IQLHCNFRMSPFCTPDRRKR----GKNDRFCTENSLIITRTFESAIS-EIYVKSQIIINI 127 Query: 117 DVLQADGGTRTASITGACVALVDA 140 +VL+ADGG R+A+I +AL +A Sbjct: 128 NVLEADGGVRSAAINATSLALANA 151 >UniRef50_O42872 Exosome complex component ski6 n=1 Tax=Schizosaccharomyces pombe RepID=RRP41_SCHPO Length = 242 Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust. Identities = 44/184 (23%), Positives = 74/184 (40%), Gaps = 18/184 (9%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTAS-IEEGVPRFLKGQGQGWI 59 +R GR +++R GS +E G+TKVLC E V + + ++ Sbjct: 12 LRNDGRRWDEMRNFQCRIGIEPSENGSAFIELGNTKVLCIVDGPSEPVIKSKARADRTFV 71 Query: 60 TAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRL-IARALRAAVDLKALGEFTITLDCDV 118 E + ST + K + R +++Q L + + + I++ V Sbjct: 72 NVEINIASFST-----IDVKKRFKSDRRIQLQCLALQNTFEEIIQTELYPRSQISVYLHV 126 Query: 119 LQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYV 178 LQ DG + I +AL+DA P+K V + GIV + + DL + Sbjct: 127 LQDDGAVMASCINATTLALIDA-----------GIPVKDFVCCSTAGIVESDMLLDLNSL 175 Query: 179 EDSA 182 E+SA Sbjct: 176 EESA 179 >UniRef50_D1Y1M0 Polyribonucleotide nucleotidyltransferase n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y1M0_9BACT Length = 751 Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust. Identities = 48/205 (23%), Positives = 90/205 (43%), Gaps = 25/205 (12%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI-----EEGVPRFLK-GQ 54 +R GR+ +++RP++ N GS L G+T+ L ++ ++ + LK + Sbjct: 311 IRADGRATDEIRPISCEVNVLPKVHGSALFTRGETQALVVTTLGMLGEDDQIIDGLKLDE 370 Query: 55 GQGWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITL 114 Y P S + +G G R + L RAL V + + + + Sbjct: 371 PNKRFLLHYNFPPYSV---GEIKPMRGP-GRREIGHGALAERALAPLVPGEEEFPYVVRV 426 Query: 115 DCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVN-GE--- 170 D+L+++G + ASI G ++++ A PMK VA +++G++ G+ Sbjct: 427 VSDILESNGSSSQASICGGSLSMMAA-----------GVPMKKHVAGIAMGLIKEGDDMV 475 Query: 171 AVCDLEYVEDSAAETDMNVVMTEDG 195 + D++ +ED + D V T DG Sbjct: 476 ILTDIQGLEDHYGDMDFKVAGTRDG 500 >UniRef50_C4LJ74 Polyribonucleotide nucleotidyltransferase n=28 Tax=Corynebacterineae RepID=PNP_CORK4 Length = 775 Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust. Identities = 50/207 (24%), Positives = 86/207 (41%), Gaps = 29/207 (14%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLC-----TASIEEGVPRFLKGQG 55 R GR +R + + + A GS L + G+T++L T +E+ V Sbjct: 391 FRIDGRGVEDIRDLDVEVDLVPRAHGSSLFQRGETQILGVTTLDTLKMEQQVDSLGPVDH 450 Query: 56 QGWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLD 115 + +I Y P ST + K ++ G L RAL+ + + +TI Sbjct: 451 RRYI-HHYNFPPYSTGETGRVGSPKRREIGHGA----LAERALKPMIPSRDDFPYTIRQV 505 Query: 116 CDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDL 175 + L ++G T S+ + ++L +A P+K VA +++G+V+GE + Sbjct: 506 SEALGSNGSTSMGSVCASTLSLYNA-----------GVPLKAPVAGIAMGLVSGEVKGKM 554 Query: 176 EYV--------EDSAAETDMNVVMTED 194 YV ED+ + D V TED Sbjct: 555 TYVTLTDILGAEDAFGDMDFKVAGTED 581 >UniRef50_UPI000180CDA2 PREDICTED: similar to Exosome complex exonuclease MTR3 (mRNA transport regulator 3 homolog) (Exosome component 6) n=1 Tax=Ciona intestinalis RepID=UPI000180CDA2 Length = 276 Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust. Identities = 40/140 (28%), Positives = 59/140 (42%), Gaps = 6/140 (4%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQ-GQGWIT 60 R GR Q R V L A+GS E TKV+C+ + + + Q +G + Sbjct: 35 RADGRYVTQPRDVFLQCGVITQAKGSAYFEMNKTKVICSVYGPKDIEMREEFQINKGKLK 94 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 E P S+ G +E ++ A+ + V L+ + I + VL+ Sbjct: 95 CELKYAPYSSPKH-----GDHIPGASDVEKSDILLEAISSGVCLQRYPKSQIDVYVIVLE 149 Query: 121 ADGGTRTASITGACVALVDA 140 DG A+IT A VALVDA Sbjct: 150 DDGSVMPAAITAASVALVDA 169 >UniRef50_D1PLM8 Polyribonucleotide nucleotidyltransferase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLM8_9FIRM Length = 759 Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust. Identities = 40/158 (25%), Positives = 66/158 (41%), Gaps = 27/158 (17%) Query: 24 AEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEY-------GMLPRSTHTRNAR 76 A GS +V +GDT VLC ++ E PR +G ++ E+ G +P S R Sbjct: 79 ANGSAMVRYGDTCVLCNVTMSEK-PR--EGVDFFPLSVEFEEKLYAAGRIPGSFMRR--- 132 Query: 77 EAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTASITGACVA 136 +G+ G + R++ R +R + +T+ L D + GA +A Sbjct: 133 ---EGRPGEHAILSSRVVDRPIRPLFPKDMRNDVCVTMTVMSLDPDNSAEITGMNGASLA 189 Query: 137 LVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCD 174 + + P G +A V VG+V+GE V + Sbjct: 190 IA-----------MSDIPWNGPIAGVFVGLVDGEIVLN 216 Score = 43.5 bits (101), Expect = 0.005, Method: Compositional matrix adjust. Identities = 60/227 (26%), Positives = 94/227 (41%), Gaps = 35/227 (15%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI-----EEGVPRFLKGQGQ 56 R GR N++RP+ GS + G T+VL ++ + + Q + Sbjct: 363 RVDGRGINEIRPLAAEVGLLPRVHGSGMFTRGQTQVLTVCTLGSTKDAQLMDDLSDTQYK 422 Query: 57 GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 +I Y P S A + G R + L RAL L EF T+ C Sbjct: 423 RYIH-HYNFPPYSVGEARAPRSP----GRREIGHGNLAERALVPV--LPDQSEFPYTIRC 475 Query: 117 --DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV-NGEAV- 172 +VL ++G T ASI G+ +AL+DA P+K VA +S G++ +G+ + Sbjct: 476 VSEVLSSNGSTSQASICGSTLALMDA-----------GVPIKAPVAGISCGLITDGDPLH 524 Query: 173 -------CDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHE 212 D++ VED + D V T G I +Q + + T+E Sbjct: 525 GGRWMTMLDIQGVEDFHGDMDFKVGGTRRG-ITAIQMDIKVDGLTYE 570 >UniRef50_Q8TCS8 Polyribonucleotide nucleotidyltransferase 1, mitochondrial n=56 Tax=cellular organisms RepID=PNPT1_HUMAN Length = 783 Score = 43.5 bits (101), Expect = 0.005, Method: Compositional matrix adjust. Identities = 56/204 (27%), Positives = 89/204 (43%), Gaps = 39/204 (19%) Query: 22 KHAEGSVLVEFGDTKVLCTA------SIEEGVPRFLKGQGQGWITAEYGMLPRSTHTRNA 75 + A+GS +V+ GDT V+ TA S + +P + + + A G +P + R Sbjct: 65 RFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKA---AAAGRIPTNYLRREI 121 Query: 76 REAAKGKQGGRTMEI--QRLIARALRAAVDLKALGEFTIT-LDCDVLQADGGTR--TASI 130 G EI R+I R++R L G F T + C++L DG +I Sbjct: 122 --------GTSDKEILTSRIIDRSIRP---LFPAGYFYDTQVLCNLLAVDGVNEPDVLAI 170 Query: 131 TGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNVV 190 GA VAL L P G V AV +GI++GE V + E S++ ++ V Sbjct: 171 NGASVAL-----------SLSDIPWNGPVGAVRIGIIDGEYVVNPTRKEMSSSTLNLVVA 219 Query: 191 MTEDGRIIEVQGTAEG---EPFTH 211 +I+ ++ +AE + F H Sbjct: 220 GAPKSQIVMLEASAENILQQDFCH 243 >UniRef50_D0NT61 Exosome complex exonuclease RRP41-like protein n=1 Tax=Phytophthora infestans T30-4 RepID=D0NT61_PHYIN Length = 777 Score = 43.5 bits (101), Expect = 0.005, Method: Compositional matrix adjust. Identities = 53/211 (25%), Positives = 84/211 (39%), Gaps = 35/211 (16%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +R GR + +VR + +GS E G+TKV+ ++ G PR L+ G + Sbjct: 25 LRVDGRRSEEVRRIRTRFGLFSRVDGSSYYEQGNTKVV---AVVYG-PRELRTAAAGSVN 80 Query: 61 ------------AEYGMLPRSTHTRNAREAA------KGKQGG--RTMEIQRLIARALRA 100 A PR+T +AA K ++ G + +E+ + + A Sbjct: 81 SGAAAVGTGSGNAASNTQPRATVNCEFTQAAFATSERKPQRSGDRKKLEMSLAVKQIFEA 140 Query: 101 AVDLKALGEFTITLDCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVA 160 + + I + VL ADGG ASI +AL+DA L + V Sbjct: 141 CIQTQLYPRSQIDIFVQVLHADGGELPASINAITLALIDAGIALND-----------FVV 189 Query: 161 AVSVGIVNGEAVCDLEYVEDSAAETDMNVVM 191 A S G + +CDL Y E+ A M + + Sbjct: 190 ASSAGYLQQTMLCDLNYAEEVARAPQMIIAL 220 >UniRef50_C7LKG2 Putative polyribonucleotide nucleotidyltransferase n=1 Tax=Candidatus Sulcia muelleri SMDSEM RepID=C7LKG2_SULMS Length = 691 Score = 43.5 bits (101), Expect = 0.005, Method: Composition-based stats. Identities = 44/197 (22%), Positives = 84/197 (42%), Gaps = 21/197 (10%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPR------FLKGQG 55 R GRS + +R + N+ GS + G+T+ L T ++ + L+ Q Sbjct: 319 RLDGRSLDDLRKIWSQTNFLPSVHGSAIFSRGETQALSTVTLGSSLDVNKIDNVILQDQQ 378 Query: 56 QGWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLD 115 + ++ Y P ST + ++ G L RAL+ + K +TI + Sbjct: 379 KFYL--HYNFPPFSTGEIKLLKGISRREIGHG----NLAQRALKNIIPFKT--PYTIRVV 430 Query: 116 CDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDL 175 D+L+++G + A++ + +AL+DA G P+ G+ + + + EA+ Sbjct: 431 SDILESNGSSSMATVCASTLALMDA-------GIPIKRPVSGISMGLIINFLTDEAIILS 483 Query: 176 EYVEDSAAETDMNVVMT 192 + + D DM+ MT Sbjct: 484 DILGDEDNIGDMDFKMT 500 >UniRef50_C9KKD1 Polyribonucleotide nucleotidyltransferase n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KKD1_9FIRM Length = 689 Score = 43.5 bits (101), Expect = 0.006, Method: Compositional matrix adjust. Identities = 52/202 (25%), Positives = 93/202 (46%), Gaps = 21/202 (10%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEE-GVPRFLKGQGQGWI 59 +RP GR +VRPV+ GS L G T++L ++ G + + G G Sbjct: 310 IRPDGREVEEVRPVSCEVGLLPRTHGSGLFTRGQTQILTVTTLGSLGDEQVIDGLGPE-- 367 Query: 60 TAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQR--LIARALRAAVDLKALGEFTITLDCD 117 T ++ + + + EA + GR EI L RAL + +TI L + Sbjct: 368 TTKHYIHHYNFPGYSVGEARPMRSPGRR-EIGHGALAERALVPVIPSIEEFPYTIRLVSE 426 Query: 118 VLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVN-GEA---VC 173 VL+++G + S+ G+ ++L++A P+K V+ V++G+V G+ + Sbjct: 427 VLESNGSSSMGSVCGSTLSLMNA-----------GVPIKRPVSGVAMGLVKEGDQYTILT 475 Query: 174 DLEYVEDSAAETDMNVVMTEDG 195 D++ +ED+ + D V T +G Sbjct: 476 DIQGMEDALGDMDFKVAGTTEG 497 Score = 41.6 bits (96), Expect = 0.019, Method: Compositional matrix adjust. Identities = 58/233 (24%), Positives = 89/233 (38%), Gaps = 46/233 (19%) Query: 12 RPVTLTR-NYTKHAEGSVLVEFGDTKVLCTASIE----EGVPRFLKGQGQGWITAEY--- 63 RP+ + K A G+VLV +GDT VL TA+ EGV F +T +Y Sbjct: 11 RPLVIENGQLAKQANGAVLVRYGDTVVLVTATASAEPREGVDFF-------PLTVDYEEK 63 Query: 64 ----GMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVL 119 G +P R R ++ + RLI R +R + I + Sbjct: 64 MYAAGKIPGGFIKREGRPSSDA------ILCARLIDRPIRPLFPKGFRNDVQIVATVLSV 117 Query: 120 QADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVE 179 + D A++ GA AL + P G +A V VG VN E V + + Sbjct: 118 EQDNAPELAAMIGASCALT-----------VSDIPFMGPIAGVRVGRVNDEFVINPTEEQ 166 Query: 180 DSAAETDMNVVMTEDGRIIEVQGTAEGEP---------FTHEELLILLALARG 223 + ++ V + D ++ V+ A P F HEE+ L+ +G Sbjct: 167 RKVSTLNLTVAGSHDA-VMMVEAGANELPEDVILDAILFGHEEIKRLVEFQQG 218 >UniRef50_UPI0001793368 PREDICTED: similar to Exosome complex exonuclease MTR3 (mRNA transport regulator 3 homolog) (Exosome component 6) n=1 Tax=Acyrthosiphon pisum RepID=UPI0001793368 Length = 279 Score = 43.5 bits (101), Expect = 0.006, Method: Compositional matrix adjust. Identities = 47/193 (24%), Positives = 84/193 (43%), Gaps = 26/193 (13%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +R GR + R + + A+GS +E G TK++C+ + VP ++ G + Sbjct: 40 VRCDGRDISAHRNLCIKTGIVTQAKGSAYLECGSTKLICSVFDPKEVPNKVEYAKTGELQ 99 Query: 61 AEYGML-----PRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLD 115 E+ R T+TR++ E ++ + RAL A+ F I ++ Sbjct: 100 CEFKFATFSCRQRRTYTRDSEER----------QLCNELRRALEPAICRGEFANFEIHIN 149 Query: 116 CDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDL 175 VL+ DG A+IT A +AL+D PM ++ A S+GI + + D Sbjct: 150 VLVLENDGSVLAAAITAAGLALMDGCI-----------PMYDVIVATSLGIYKNKILVDP 198 Query: 176 EYVEDSAAETDMN 188 Y E++ + ++ Sbjct: 199 TYDEETLCSSTID 211 >UniRef50_B0ERA1 Exosome complex exonuclease RRP41, putative n=2 Tax=Entamoeba RepID=B0ERA1_ENTDI Length = 238 Score = 43.5 bits (101), Expect = 0.006, Method: Compositional matrix adjust. Identities = 46/180 (25%), Positives = 75/180 (41%), Gaps = 18/180 (10%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR ++R + N+ ++GS V G+T V E V L+G+ + A Sbjct: 10 RLDGRRTTEMRKCEMEINFLNTSDGSARVRMGNTIV------EAVVFGPLEGRRRNREGA 63 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQA 121 E M+ S T R+ + +E L+ + + K L E I L ++Q Sbjct: 64 EL-MVSYSQATFATRKRREQMHDRTMIETAELLKQMYEQVIITKLLPETMIDLRVQIMQD 122 Query: 122 DGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDS 181 DG A I +AL+DA PM +V+A G ++G+ V D+ E++ Sbjct: 123 DGSVTAAVINACTLALIDA-----------GIPMIDIVSAAEGGYIDGKMVVDMNKDEEN 171 >UniRef50_UPI000186F240 conserved hypothetical protein n=1 Tax=Pediculus humanus corporis RepID=UPI000186F240 Length = 278 Score = 43.5 bits (101), Expect = 0.006, Method: Compositional matrix adjust. Identities = 41/190 (21%), Positives = 72/190 (37%), Gaps = 26/190 (13%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +R GR+ R + + A+GS +E +TKVL + +PR + G I Sbjct: 41 IRKDGRTFEDQRKIYMKTGVVTQAKGSAYLELNNTKVLVSVFEPREIPRLSEFTPNGEIY 100 Query: 61 AEYGMLP-----RSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLD 115 E+ P R H + E ++ ++ R+L AV F + + Sbjct: 101 CEFKFAPFYGLERKGHIMDLEEK----------DLSIILKRSLEPAVCRHEFPNFQVDVY 150 Query: 116 CDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDL 175 +L DG +A+IT A PM ++ +V++GI N D Sbjct: 151 ALLLDNDGSCLSAAITAA-----------GLALADAGIPMYDILTSVTLGIHNDMIFIDP 199 Query: 176 EYVEDSAAET 185 + E+ ++ Sbjct: 200 NFEEEKFCKS 209 >UniRef50_A1RXQ5 Ribosomal RNA-processing protein RRP42 n=1 Tax=Thermofilum pendens Hrk 5 RepID=A1RXQ5_THEPD Length = 272 Score = 43.1 bits (100), Expect = 0.007, Method: Compositional matrix adjust. Identities = 57/237 (24%), Positives = 92/237 (38%), Gaps = 43/237 (18%) Query: 5 GRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYG 64 GR +Q R + L + A+GS V G T+V+ + G P F +G Sbjct: 28 GRKADQYREIRLEKGIIGKADGSARVFLGSTQVIAGVKLAIGTP-FPDAPNEGVQIVNAE 86 Query: 65 MLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAA--VDLKALGE------FTITLDC 116 + P ++ G G +E+ R++ R R+A VDL L +T+ +D Sbjct: 87 LSPVASPFFEP-----GPPGEEDIELARVVDRGFRSAKVVDLAKLSIIPSAKCWTLYIDI 141 Query: 117 DVLQADGG------------------TRTASITGACVALVDALQKLVENGKLKTNPMKGM 158 L DG RT S+ +A++D L P+ + Sbjct: 142 YPLDHDGNLVDAAGLAALLALLDTKLPRT-SVQENKIAVLDEKDPL---------PINTL 191 Query: 159 VAAVSVGIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELL 215 V V+V + V D E+ A+ + +TE G I +Q + EG F +E+L Sbjct: 192 VVYVTVAKIGEYLVVDPTLEEELTADAKITFGITERGEICAIQKSGEGS-FRPDEVL 247 >UniRef50_B7ATJ6 Putative uncharacterized protein n=2 Tax=Bacteria RepID=B7ATJ6_9BACE Length = 742 Score = 43.1 bits (100), Expect = 0.007, Method: Compositional matrix adjust. Identities = 51/209 (24%), Positives = 88/209 (42%), Gaps = 34/209 (16%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTK---VLCTASIEEGVPRFLKGQGQGW 58 RP GR+ Q+RP+ + GS + G T+ V+ A + E + + G + Sbjct: 358 RPDGRAITQIRPLAAEIDLIPRVHGSAMFTRGQTQICDVVTLAPLSEA--QKVDGLDEN- 414 Query: 59 ITAEYGMLPRSTHTRNAREAAKGK------QGGRTMEIQRLIARALRAAVDLKALGEFTI 112 +TA+ R H N + G+ G R + L RAL + + + I Sbjct: 415 VTAK-----RYIHHYNFPSYSVGETKPSRGPGRREIGHGALAERALIPVLPSEEEFPYAI 469 Query: 113 TLDCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGE-- 170 + +++G T AS +C++L+ A P+K MVA +S G+V G+ Sbjct: 470 RAVSETFESNGSTSMASTCASCMSLMAA-----------GVPIKRMVAGISCGLVTGDTD 518 Query: 171 ----AVCDLEYVEDSAAETDMNVVMTEDG 195 + D++ +ED + D V T +G Sbjct: 519 DDYIVLTDIQGLEDFFGDMDFKVTGTTEG 547 >UniRef50_C7MNH4 Polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) n=7 Tax=Coriobacteriaceae RepID=C7MNH4_CRYCD Length = 742 Score = 43.1 bits (100), Expect = 0.008, Method: Compositional matrix adjust. Identities = 48/203 (23%), Positives = 91/203 (44%), Gaps = 25/203 (12%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVL--CT-ASIEEG--VPRFLKGQGQ 56 R GR+ +++RP+ + Y GS L + G T+ L CT ++ EG + +G+ Sbjct: 315 RVDGRAADEIRPLYIRPGYLPRVHGSGLFQRGQTQALSVCTLGTLREGQRLDTIDPSEGK 374 Query: 57 GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 ++ +Y P T A K ++ G +R + L + D + I + Sbjct: 375 RYMH-QYNFPPYCTGEVGRIGAPKRREIGHGALAERALIPVLPSEDDFP----YAIRVVS 429 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVN--GEAV-- 172 ++L+++G + AS G+ +AL+DA P+ V+ +++G++ E V Sbjct: 430 EILESNGSSSMASTCGSTLALMDA-----------GVPITAPVSGIAMGLIKEGDETVIL 478 Query: 173 CDLEYVEDSAAETDMNVVMTEDG 195 D++ +ED + D V T G Sbjct: 479 SDIQGLEDFLGDMDFKVTGTARG 501 >UniRef50_A8F725 Polyribonucleotide nucleotidyltransferase n=21 Tax=Bacteria RepID=PNP_THELT Length = 710 Score = 42.7 bits (99), Expect = 0.010, Method: Compositional matrix adjust. Identities = 45/198 (22%), Positives = 79/198 (39%), Gaps = 23/198 (11%) Query: 6 RSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVL----CTASIEEGVPRFLKGQGQGWITA 61 R +RP+T GS L G+T+ L A ++E + L +G Sbjct: 321 RKPKDIRPITCETGLLPRVHGSALFTRGETQSLGIVTLGAPMDEQIIDSLLEEGTKRFML 380 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQA 121 Y P ST ++ G L RAL+ + + +TI + ++L++ Sbjct: 381 HYNFPPFSTGEVKPLRGPSRREIGHG----HLAERALKFVLPDEDRFPYTIRIVSEILES 436 Query: 122 DGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV----NGEAVCDLEY 177 +G + A++ +AL+DA P+ VA V++G++ + + D+ Sbjct: 437 NGSSSMATVCSGSLALMDA-----------GVPISKHVAGVAMGLILEKDSQIVLTDILG 485 Query: 178 VEDSAAETDMNVVMTEDG 195 ED + D V T DG Sbjct: 486 AEDHWGDMDFKVAGTRDG 503 >UniRef50_A1UU54 Polyribonucleotide nucleotidyltransferase n=155 Tax=cellular organisms RepID=PNP_BARBK Length = 733 Score = 42.4 bits (98), Expect = 0.012, Method: Compositional matrix adjust. Identities = 48/202 (23%), Positives = 85/202 (42%), Gaps = 23/202 (11%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQG 57 R GR + VRP+ GS L G+T+ L A++ +E L G + Sbjct: 317 RIDGRDLSTVRPIQSEVGILPRTHGSALFTRGETQALVVATLGTSEDEQYVDLLTGVCKE 376 Query: 58 WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCD 117 Y P S R ++ G+ R + +L RA+ + K +TI + + Sbjct: 377 TFLLHYNFPPFSV-GETGRLSSPGR---REIGHGKLAWRAIHPMLPTKEAFPYTIRVVSE 432 Query: 118 VLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVN-GEAVCDLE 176 + +++G + A++ G +AL+DA P+ VA +++G++ GE L Sbjct: 433 ITESNGSSSMATVCGTSLALMDA-----------GVPLARPVAGIAMGLIKEGERFVILS 481 Query: 177 YV---EDSAAETDMNVVMTEDG 195 + ED + D V T++G Sbjct: 482 DILGDEDHLGDMDFKVAGTKNG 503 >UniRef50_UPI00015B5B6C PREDICTED: similar to ENSANGP00000009222 n=2 Tax=Apocrita RepID=UPI00015B5B6C Length = 270 Score = 42.4 bits (98), Expect = 0.013, Method: Compositional matrix adjust. Identities = 38/149 (25%), Positives = 66/149 (44%), Gaps = 16/149 (10%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQG----- 55 +R GR ++R + L A+GS +E G TK+L T P +G+ Sbjct: 12 LRADGRRPLELRRIRLRMGVFGQADGSAYLEQGKTKILATVY----GPHQPRGKANANAL 67 Query: 56 ---QGWITAEYGMLPRSTHTRNAREAAKGKQGGR-TMEIQRLIARALRAAVDLKALGEFT 111 +G + +Y + + A E K +G R + E + + A+ A ++L+ Sbjct: 68 KAVKGIVNCQYST---AVFSFGAGERKKKPRGDRKSQERSQQLRHAMEAIINLELFARSQ 124 Query: 112 ITLDCDVLQADGGTRTASITGACVALVDA 140 I + +VLQ DG ++ A +AL+DA Sbjct: 125 IDIFVEVLQVDGSDFCVAVNAATLALIDA 153 >UniRef50_Q5TMQ4 AGAP011906-PA n=4 Tax=Culicidae RepID=Q5TMQ4_ANOGA Length = 308 Score = 42.4 bits (98), Expect = 0.013, Method: Compositional matrix adjust. Identities = 47/178 (26%), Positives = 69/178 (38%), Gaps = 26/178 (14%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR + R A+GS VE G+TKV+ + +P+ K G + Sbjct: 43 RKDGRRLQESRKYYAKIGVVSTAKGSAYVELGNTKVIVSVFDPREIPKQNKFCELGELFC 102 Query: 62 EYGMLP-----RSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 + P R TH +ARE R+M + AL +V I + Sbjct: 103 DLKFSPFAPAVRKTHQTDARE--------RSMTAA--LTSALNPSVCRHLFPNLQIDVFA 152 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCD 174 +VL+ DG +IT A +AL DA PM +V A + G++ V D Sbjct: 153 NVLEDDGSALAVAITAAGLALGDACV-----------PMFDIVTAATAGVLGDRVVMD 199 >UniRef50_A0D7C7 Chromosome undetermined scaffold_4, whole genome shotgun sequence n=1 Tax=Paramecium tetraurelia RepID=A0D7C7_PARTE Length = 227 Score = 42.0 bits (97), Expect = 0.014, Method: Compositional matrix adjust. Identities = 46/192 (23%), Positives = 83/192 (43%), Gaps = 29/192 (15%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR+ Q+R + +GS L + G T+V+C +G PR K Q + + Sbjct: 5 RQDGRNLQQMRNIEFKLAIDLSVDGSCLYKQGLTEVICLV---QG-PR-AKTQSE-LLLI 58 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVD----LKALGEFTITLDCD 117 EY + P S + K+ + + + A L+ + + L G+ I++ Sbjct: 59 EYSVSPFSN--------IESKRSSKFDKDYSMFAENLKESFENLIILDENGKSEISISVC 110 Query: 118 VLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEY 177 V+Q DG +++A +AL+DA MK + +V+VG+ G + DL Sbjct: 111 VIQNDGSSKSAVFNAITLALLDA-----------GVSMKDFLVSVTVGLDQGNLIVDLTQ 159 Query: 178 VEDSAAETDMNV 189 E A+ ++ + Sbjct: 160 EESKTAQGELTI 171 >UniRef50_Q0IT44 Os11g0311300 protein (Fragment) n=11 Tax=Magnoliophyta RepID=Q0IT44_ORYSJ Length = 300 Score = 42.0 bits (97), Expect = 0.016, Method: Compositional matrix adjust. Identities = 42/160 (26%), Positives = 62/160 (38%), Gaps = 22/160 (13%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +RP R + RP T+ A GS LV GDT +L + +E P + +G I Sbjct: 33 VRPDARRPAEARPTTVALAAVSSAHGSALVRLGDTAMLASIKLEVMSPSG-EAPDEGSIA 91 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALR------AAVDLKAL------G 108 E+ M P + + GR E+ +I++ L ++LK L Sbjct: 92 VEFHMPPICSPL---------VRPGRPAEVAPVISKNLEDILMSSGMLNLKELCLISGKA 142 Query: 109 EFTITLDCDVLQADGGTRTASITGACVALVDALQKLVENG 148 + LD L ADG A++ A A LV G Sbjct: 143 SWLAYLDVYCLNADGSLFDAALISAVAAFTHLEIPLVSVG 182 >UniRef50_A9NGE2 Polyribonucleotide nucleotidyltransferase n=5 Tax=Acholeplasmataceae RepID=PNP_ACHLI Length = 715 Score = 42.0 bits (97), Expect = 0.018, Method: Compositional matrix adjust. Identities = 49/203 (24%), Positives = 93/203 (45%), Gaps = 22/203 (10%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTK---VLCTASIEEGVPRFLKGQGQG 57 +RP GR +++RP+ + + GS L G T+ ++ S+ E + + G Q Sbjct: 327 VRPDGRGLDEIRPLASSVDLLPRTHGSALFTRGQTQALGIVTLGSLNEN--QIIDGLEQE 384 Query: 58 WITAEYGMLPRSTHTRNAREAAK-GKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 +T + ML + + E + G G R + L RAL + + + I + Sbjct: 385 TVTKRF-MLHYNFPPFSVGETGRYGAPGRREIGHGALGERALLQVLPSEDEFPYAIRVVS 443 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVG-IVNGE---AV 172 ++ +++G + A+I +AL+ A P+K VA +++G I++GE + Sbjct: 444 EITESNGSSSQATICVGSMALMAA-----------GVPIKAPVAGIAMGLIMDGEHYSIL 492 Query: 173 CDLEYVEDSAAETDMNVVMTEDG 195 D++ +ED + D V T+DG Sbjct: 493 SDIQGMEDHEGDMDFKVAGTKDG 515 >UniRef50_A8Z660 Polyribonucleotide nucleotidyltransferase n=4 Tax=Flavobacteriales RepID=PNP_SULMW Length = 728 Score = 40.8 bits (94), Expect = 0.032, Method: Composition-based stats. Identities = 44/203 (21%), Positives = 87/203 (42%), Gaps = 25/203 (12%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVP------RFLKGQ 54 +R GRS + +R + + GS + G+T+ L T ++ + ++ + Sbjct: 339 IRLDGRSLDDIRNICSQVDCLPGVHGSAIFTRGETQALSTVTLGSSLDVNKIDNAIMRAK 398 Query: 55 GQGWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITL 114 + ++ Y P ST + ++ G L RAL+ + +TI + Sbjct: 399 QRFYL--HYNFPPFSTGEIKLLKGVSRREIGHG----NLAQRALKNIIPTT----YTIRV 448 Query: 115 DCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAV-- 172 DVL+++G + A++ + +AL+D+ G + P+ G+ + + + GEA+ Sbjct: 449 VSDVLESNGSSSMATVCASTLALMDS-------GIIVKRPVSGISMGLIMNYLTGEAIIL 501 Query: 173 CDLEYVEDSAAETDMNVVMTEDG 195 DL ED + D + TE G Sbjct: 502 SDLLGDEDYIGDMDFKITGTEYG 524 >UniRef50_C1E4G7 Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1E4G7_9CHLO Length = 232 Score = 40.8 bits (94), Expect = 0.039, Method: Compositional matrix adjust. Identities = 40/127 (31%), Positives = 55/127 (43%), Gaps = 12/127 (9%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGV--PRFLKGQGQGWI 59 R GRS Q+RP+ + A GS VE TKV+C GV PR G G + Sbjct: 5 REDGRSAEQMRPIFVKTGVISQAAGSAYVELDKTKVMC------GVYGPR-QGGPGIDKV 57 Query: 60 TAEYGMLPRSTHTRN-AREAAKGK--QGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 + G L A +GK QG E ++ RAL AV + + T+ + Sbjct: 58 EFDRGRLDVDVKLATFATSGPRGKVAQGDAEREFSSIVHRALSGAVMTETFPKTTVDVFA 117 Query: 117 DVLQADG 123 VL+A+G Sbjct: 118 TVLEANG 124 >UniRef50_B3S9X0 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens RepID=B3S9X0_TRIAD Length = 240 Score = 40.8 bits (94), Expect = 0.039, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 5/118 (4%) Query: 23 HAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTHTRNAREAAKGK 82 A GS +E +TK++C V + + Q + E T + R + Sbjct: 23 QAVGSAYIELRNTKIICAVYGPREVAKKQEFNIQATVACELKF-----ATFSCRRRRRHI 77 Query: 83 QGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTASITGACVALVDA 140 Q + E ++I +AL+ V L + I + VLQ DG +IT A VAL D+ Sbjct: 78 QDSQEKEYSQIIVQALQPVVRLDKYPKSQIDIFITVLQNDGSVLGGAITAASVALADS 135 >UniRef50_C1TQM6 Polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TQM6_9BACT Length = 749 Score = 40.4 bits (93), Expect = 0.043, Method: Compositional matrix adjust. Identities = 46/205 (22%), Positives = 85/205 (41%), Gaps = 27/205 (13%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI------EEGVPRFLKGQG 55 R GR +++R ++ + GS + G+T+ L TA++ ++ + + Sbjct: 312 RADGRKTDELRSLSCEVDVLPKVHGSAVFTRGETQSLATATLGMLGEDDQLIDGLKHNEP 371 Query: 56 QGWITAEYGMLPRST-HTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITL 114 Y P S R R G R + L RAL + + + + Sbjct: 372 NKSFLLHYNFPPYSVGEVRPMR-----GPGRREIGHGALAERALTPIIPDDTEFPYVVRV 426 Query: 115 DCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVN-GEAVC 173 D+L+++G + ASI G +AL+ A P+K VA +++G++ G+ V Sbjct: 427 VSDILESNGSSSQASICGGSLALMSA-----------GVPIKRHVAGIAMGLIKEGDDVV 475 Query: 174 ---DLEYVEDSAAETDMNVVMTEDG 195 D++ +ED + D V T +G Sbjct: 476 VLTDIQGLEDHYGDMDFKVAGTREG 500 >UniRef50_B3QZG1 Polyribonucleotide nucleotidyltransferase n=1 Tax=Candidatus Phytoplasma mali AT RepID=PNP_PHYMT Length = 728 Score = 40.4 bits (93), Expect = 0.044, Method: Composition-based stats. Identities = 41/207 (19%), Positives = 87/207 (42%), Gaps = 27/207 (13%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQ 56 +RP GR+++++R +T + GS L G T+ L ++ E + L + Sbjct: 337 IRPDGRNSSEIRSITSRIDILPRTHGSALFTRGGTQSLAIVTLGTLRESKIIDDLSDEVD 396 Query: 57 GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 Y + + A ++ G M ++ + L + D ++I + Sbjct: 397 KRFMLHYNFPAFAVGSVGRYLAPSRREIGHGMLAEKALECVLPSENDFP----YSIRVVS 452 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGE------ 170 ++L ++G + A+I + +AL+ A P+K +VA V++G++ + Sbjct: 453 EILDSNGSSSQATICASSMALMSA-----------GVPLKSLVAGVAMGLIVDDIDKINH 501 Query: 171 --AVCDLEYVEDSAAETDMNVVMTEDG 195 + D+E +ED + D + T+ G Sbjct: 502 YTILSDIEGLEDYQGDIDFKIAGTKVG 528 >UniRef50_B3TBC7 Putative 3' exoribonuclease family, domain 1 n=1 Tax=uncultured marine crenarchaeote HF4000_APKG8O8 RepID=B3TBC7_9ARCH Length = 273 Score = 40.0 bits (92), Expect = 0.054, Method: Compositional matrix adjust. Identities = 55/233 (23%), Positives = 100/233 (42%), Gaps = 28/233 (12%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWI-T 60 R GR+ ++ RP+++ HA GS V GDT+V+ I+ P G+ +I T Sbjct: 24 RIDGRALDEHRPLSIDVGVIPHANGSARVRLGDTEVVAGVKIQPDRPFPDMGEKGIFICT 83 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAA--VDLKAL----GEFTITL 114 AE +LP + + G +EI R++ R +R + +DL + + I L Sbjct: 84 AE--ILPLAHPS-----VETGPPQPYVIEIARVVDRGIRESGMIDLSQMVLVKDKSVIGL 136 Query: 115 DCD--VLQADGGTRTA-SITGACVALVDALQK--------LVENGKLKTNPMKGMVAAVS 163 D V DG A S L + K ++ +G+ P+ + +V+ Sbjct: 137 FADNVVTDHDGNLFDACSYASTAAVLTSKMPKWEMKDDKPVLVDGEESDTPITTIPVSVT 196 Query: 164 VGIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQ-GTAEGEPFTHEELL 215 +G++ + D E + + + DG I+ +Q G + G F+ ++L+ Sbjct: 197 MGLIGEYIIVDPNLDEWECLDARITITTNSDGNIVALQKGGSSG--FSLDQLI 247 >UniRef50_A5URV5 Polyribonucleotide nucleotidyltransferase n=11 Tax=Bacteria RepID=PNP_ROSS1 Length = 747 Score = 40.0 bits (92), Expect = 0.059, Method: Compositional matrix adjust. Identities = 50/200 (25%), Positives = 84/200 (42%), Gaps = 24/200 (12%) Query: 5 GRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQGWIT 60 GR +RP+++ GS L G T+VL A++ EE L + Sbjct: 324 GRGPKDIRPISIEVGLIPRVHGSGLFTRGQTQVLTLATLGSPAEEQRLDDLGIETTKRYI 383 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 Y P ST + + + G L R+L A + K +T+ L + L Sbjct: 384 HHYNFPPFSTGEVRRLGSPRRRDIGHGA----LAERSLLAVLPSKEEFPYTMRLVSETLS 439 Query: 121 ADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGE-----AVCDL 175 ++G + AS+ G+ +AL+DA P+K VA V++G++ G+ + D+ Sbjct: 440 SNGSSSMASVCGSSLALMDA-----------GVPIKAPVAGVAMGLITGKDGRWRVLTDI 488 Query: 176 EYVEDSAAETDMNVVMTEDG 195 + +ED + D V T G Sbjct: 489 QGIEDHLGDMDFKVAGTAKG 508 >UniRef50_B9MZ65 Predicted protein n=6 Tax=Magnoliophyta RepID=B9MZ65_POPTR Length = 263 Score = 40.0 bits (92), Expect = 0.060, Method: Compositional matrix adjust. Identities = 46/182 (25%), Positives = 69/182 (37%), Gaps = 23/182 (12%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTA--SIEEGVPRFLKGQGQGWI 59 R GR +Q R A GS EFG+TKV+ + E +G+ Sbjct: 41 RSDGRGFHQCRSAFFRTGAVNSAAGSAYAEFGNTKVIVSVFGPRESKKAMMYSDKGKLNC 100 Query: 60 TAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVL 119 Y + H QG E ++ +AL AV L+ + T+ + VL Sbjct: 101 NVSYTTFATTVH----------GQGSDNKEFSTMLHKALEGAVMLETFPKTTVDVFALVL 150 Query: 120 QADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVE 179 ++ G I+ A +AL DA G + M +VA VSV + + D E Sbjct: 151 ESGGSDLPVVISCASLALADA-------GIM----MYDLVAGVSVSCLGRNLIIDPTLEE 199 Query: 180 DS 181 +S Sbjct: 200 ES 201 >UniRef50_B7G0I4 Predicted protein n=2 Tax=Bacillariophyta RepID=B7G0I4_PHATR Length = 830 Score = 40.0 bits (92), Expect = 0.062, Method: Compositional matrix adjust. Identities = 49/198 (24%), Positives = 82/198 (41%), Gaps = 23/198 (11%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPR----FLKGQGQ 56 +R GR +R +T+ GS L G+T+ + T ++ R L G + Sbjct: 389 LRCDGRGPTDIRQLTMETGLLPRVHGSALFTRGETQCVATTTLGGSGMRQKIEKLDGTDE 448 Query: 57 GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 +Y P S R A G+ R + L RAL + A +TI ++ Sbjct: 449 KRFYLQY-TFPPSCVGETGRVGAPGR---REVGHGNLAERALIPTIPALADFPYTIRVES 504 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLE 176 + ++ G + AS+ G +AL+DA P+K VA +++G++ G D Sbjct: 505 LITESHGSSSMASVCGGSLALMDA-----------GVPIKAPVAGIAMGMLLG----DKG 549 Query: 177 YVEDSAAETDMNVVMTED 194 V D A +++ TED Sbjct: 550 GVSDENAVILSDILGTED 567 >UniRef50_C1BRT2 Exosome complex exonuclease RRP43 n=1 Tax=Caligus rogercresseyi RepID=C1BRT2_9MAXI Length = 279 Score = 40.0 bits (92), Expect = 0.063, Method: Compositional matrix adjust. Identities = 58/236 (24%), Positives = 97/236 (41%), Gaps = 49/236 (20%) Query: 24 AEGSVLVEFGDTKVLC-----TASIEEGVPRFLKGQGQGWITAEYGMLPRSTHTRNAREA 78 A+GS +V G T V+C AS++E P +G+I LP H R + Sbjct: 49 ADGSAIVRKGHTTVICGITLQIASLDEETP------TKGYIVPHVD-LPSMCHPRIYK-- 99 Query: 79 AKGKQGGRTMEIQRLIARAL--RAAVDLKAL----GEFTITLDCDV--LQADGGTRTASI 130 +KG M + + I + VD K L GE L D+ L DG R A + Sbjct: 100 SKGPTAEEAMILTKFIMDVILNSEVVDPKDLCIVPGEIVWVLKIDLTCLNQDGNLRDALV 159 Query: 131 TGACVAL--------------------VDALQKLVENGKLKTNPMKGMVAAVSVGIVNGE 170 T +AL ++ +K E+ L+ +K + +VS+ ++ GE Sbjct: 160 TALILALKSLRFPKVVSYKAEDEDKTQINVFEK--EHSSLR---LKNIPVSVSIAVMEGE 214 Query: 171 -AVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 + D E++ A + VV+ + + + GEP E + ++ LAR ++ Sbjct: 215 RLLVDPTDEEETFATDSITVVLNAEEELCYLSKNG-GEPIFDELMNKVIDLARAQA 269 >UniRef50_Q8ZVN0 Probable exosome complex exonuclease 2 n=5 Tax=Thermoproteaceae RepID=ECX2_PYRAE Length = 274 Score = 39.7 bits (91), Expect = 0.074, Method: Compositional matrix adjust. Identities = 58/240 (24%), Positives = 96/240 (40%), Gaps = 28/240 (11%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 R GR Q R V + K A+GS V+ G T V+ + G P F +G + Sbjct: 28 YRVDGRGPEQTRNVEINVGVVKTADGSAEVKLGKTHVVAGVKVGLGQP-FPDAPDEGVLV 86 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALR--AAVDLKALG-----EFTIT 113 +LP ++ G +E+ R++ R +R VD K L + + Sbjct: 87 VNAEVLPHASPYTEV-----GPPDEFAIELARVVDRGIRHCGYVDFKKLAVEGGKAYVLW 141 Query: 114 LDCDVLQADGGTRTASITGACVALVDALQKLV---ENGKLKTN-----PMKGMVA----A 161 +D V+ DG + + AL + +V E G +K + P+ ++ A Sbjct: 142 IDLYVINDDGNLIDVANLASVAALKNTQLPVVVKDEAGVVKLDRNNKAPLPVDISKAPIA 201 Query: 162 VSVGIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALA 221 VSVG + D + E+ + + + +ED +I+ Q T FT E+ L LA Sbjct: 202 VSVGKIGNVLFLDPTFEEELSLDGRITFTFSED-KIVAAQKTLGY--FTQSEIEAALNLA 258 >UniRef50_A7RP27 Predicted protein (Fragment) n=1 Tax=Nematostella vectensis RepID=A7RP27_NEMVE Length = 710 Score = 39.7 bits (91), Expect = 0.082, Method: Compositional matrix adjust. Identities = 51/216 (23%), Positives = 83/216 (38%), Gaps = 38/216 (17%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI--------EEGVPRFLKG 53 R GR +++R + N K GS L + G+T+V TA+ + + + G Sbjct: 305 RCDGRQFDELRSIDCDINLYKTLHGSSLFKRGETQVFSTATFGSVGSAAKVDTISEAVGG 364 Query: 54 QGQGWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTIT 113 + Y P ST+ R +G R + L RAL L FT+ Sbjct: 365 SKEKQFMLHYEFPPFSTNEVKQR---RGSFDRREIGHGALAERALVPV--LPDELPFTLR 419 Query: 114 LDCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV------ 167 L +VL ++G + AS +A++DA P+K VA + G+V Sbjct: 420 LTAEVLGSNGSSSLASACAGSLAMMDA-----------GVPIKSHVAGSACGLVTSSDAE 468 Query: 168 --------NGEAVCDLEYVEDSAAETDMNVVMTEDG 195 N + + D+ +ED + D + T G Sbjct: 469 DASKRDIDNYQLLTDILGIEDYLGDMDFKIAGTRQG 504 >UniRef50_Q4P5R4 Putative uncharacterized protein n=1 Tax=Ustilago maydis RepID=Q4P5R4_USTMA Length = 297 Score = 39.7 bits (91), Expect = 0.082, Method: Compositional matrix adjust. Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 7/69 (10%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQ---GQGW 58 RP RS +Q+RP+ L + A GS VE GD K+ C+ PR +KG+ G+ Sbjct: 38 RPDQRSYSQLRPIFLQTHLVPSASGSSYVEIGDLKLACSV----FGPRQVKGRQYSGKAE 93 Query: 59 ITAEYGMLP 67 + E P Sbjct: 94 LNVEVKFAP 102 >UniRef50_B7GDQ5 Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7GDQ5_PHATR Length = 140 Score = 39.7 bits (91), Expect = 0.088, Method: Compositional matrix adjust. Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 16/140 (11%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGV-PRFLKGQGQGWIT 60 R GR + +RP++ +A+GS L + G T+VL A++ V PR + + Q Sbjct: 3 RADGRLASTLRPLSCELGTLHNADGSALWKSGSTQVL--AAVHGPVAPRQPQHETQ---K 57 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 A+ ++ +S T N E E + I +AL A + + I + +L Sbjct: 58 AKISIIIKSGTTVNTLE----------REWEAFITKALTACLVTEQYPRSVIQIVLQILS 107 Query: 121 ADGGTRTASITGACVALVDA 140 ADG A++ GA AL+DA Sbjct: 108 ADGSVLGAALNGAVAALMDA 127 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_C1DI48 Ribonuclease PH n=157 Tax=Bacteria RepID=RNPH_AZOVD 271 2e-71 UniRef50_B9MQJ8 Ribonuclease PH n=58 Tax=Bacteria RepID=RNPH_ANATD 262 8e-69 UniRef50_A8EY33 Ribonuclease PH n=14 Tax=Rickettsieae RepID=RNPH... 260 3e-68 UniRef50_Q2P6N2 Ribonuclease PH n=933 Tax=cellular organisms Rep... 258 8e-68 UniRef50_Q83HF6 Ribonuclease PH n=17 Tax=Bacteria RepID=RNPH_TROW8 254 2e-66 UniRef50_B2UNC2 Ribonuclease PH n=3 Tax=Verrucomicrobia RepID=B2... 251 1e-65 UniRef50_Q2JKT3 Ribonuclease PH n=22 Tax=Bacteria RepID=RNPH_SYNJB 251 2e-65 UniRef50_B1I4W9 Ribonuclease PH n=67 Tax=Bacteria RepID=RNPH_DESAP 251 2e-65 UniRef50_A1KID0 Ribonuclease PH n=18 Tax=Bacteria RepID=RNPH_MYCBP 247 2e-64 UniRef50_D0DA55 Ribonuclease PH n=2 Tax=Rhodobacteraceae RepID=D... 247 2e-64 UniRef50_C9KNG5 tRNA nucleotidyltransferase n=2 Tax=Firmicutes R... 245 1e-63 UniRef50_B7KB81 Ribonuclease PH n=7 Tax=Bacteria RepID=RNPH_CYAP7 244 1e-63 UniRef50_C1RJ73 RNAse PH n=1 Tax=Cellulomonas flavigena DSM 2010... 241 1e-62 UniRef50_D1CFI4 Ribonuclease PH n=3 Tax=Bacteria RepID=D1CFI4_THET1 241 1e-62 UniRef50_Q7U9I1 Ribonuclease PH n=14 Tax=Cyanobacteria RepID=RNP... 233 3e-60 UniRef50_C2D8L5 tRNA nucleotidyltransferase n=1 Tax=Atopobium va... 232 6e-60 UniRef50_C1XM20 Ribonuclease PH n=2 Tax=Meiothermus RepID=C1XM20... 224 2e-57 UniRef50_A9FGR1 Ribonuclease PH n=2 Tax=Bacteria RepID=A9FGR1_SORC5 223 3e-57 UniRef50_C1CZJ0 Putative tRNA nucleotidyltransferase (Phosphate-... 222 6e-57 UniRef50_Q3ABA6 Polyribonucleotide nucleotidyltransferase n=111 ... 221 2e-56 UniRef50_Q9RU11 Ribonuclease PH n=2 Tax=Deinococcus RepID=RNPH_D... 217 3e-55 UniRef50_B7IE23 Polyribonucleotide nucleotidyltransferase n=3 Ta... 214 3e-54 UniRef50_D2VEP3 Predicted protein n=1 Tax=Naegleria gruberi RepI... 213 4e-54 UniRef50_C9RL26 Polyribonucleotide nucleotidyltransferase n=1 Ta... 210 4e-53 UniRef50_D1AX54 Polyribonucleotide nucleotidyltransferase n=2 Ta... 209 5e-53 UniRef50_B6YSI2 Probable exosome complex exonuclease 1 n=33 Tax=... 208 1e-52 UniRef50_C1L2N7 Polyribonucleotide nucleotidyltransferase n=48 T... 208 1e-52 UniRef50_Q9S7G6 Polynucleotide phosphorylase n=36 Tax=cellular o... 207 4e-52 UniRef50_Q0AYI2 Polyribonucleotide nucleotidyltransferase n=70 T... 206 6e-52 UniRef50_Q1IQ54 Polyribonucleotide nucleotidyltransferase n=96 T... 205 9e-52 UniRef50_C0R0E0 Polyribonucleotide nucleotidyltransferase n=2 Ta... 205 1e-51 UniRef50_Q0SM46 Polyribonucleotide nucleotidyltransferase n=24 T... 204 2e-51 UniRef50_B9KYR9 Polyribonucleotide nucleotidyltransferase n=53 T... 203 4e-51 UniRef50_B3EH06 Polyribonucleotide nucleotidyltransferase n=1 Ta... 203 5e-51 UniRef50_A2BKC0 Probable exosome complex exonuclease 1 n=32 Tax=... 203 5e-51 UniRef50_Q6L223 Ribonuclease PH n=1 Tax=Picrophilus torridus Rep... 202 8e-51 UniRef50_B3EMN6 Polyribonucleotide nucleotidyltransferase n=12 T... 201 1e-50 UniRef50_Q2GJV5 Polyribonucleotide nucleotidyltransferase n=138 ... 201 1e-50 UniRef50_B9E1K8 Polyribonucleotide nucleotidyltransferase n=15 T... 201 2e-50 UniRef50_C1A3Y1 Polyribonucleotide nucleotidyltransferase n=2 Ta... 200 3e-50 UniRef50_B5Y8I4 Polyribonucleotide nucleotidyltransferase n=1 Ta... 199 5e-50 UniRef50_D2L1T8 Polyribonucleotide nucleotidyltransferase n=1 Ta... 199 6e-50 UniRef50_Q2GEY8 Polyribonucleotide nucleotidyltransferase n=2 Ta... 199 6e-50 UniRef50_Q2S1P1 Polyribonucleotide nucleotidyltransferase n=1 Ta... 199 8e-50 UniRef50_Q9SP08 Exonuclease RRP41 n=15 Tax=Magnoliophyta RepID=Q... 197 2e-49 UniRef50_D1INE0 Whole genome shotgun sequence of line PN40024, s... 197 2e-49 UniRef50_D0WEI7 Polyribonucleotide nucleotidyltransferase n=1 Ta... 197 3e-49 UniRef50_A9A5C9 Probable exosome complex exonuclease 1 n=3 Tax=A... 196 5e-49 UniRef50_A9B8G1 Polyribonucleotide nucleotidyltransferase n=38 T... 196 5e-49 UniRef50_UPI000038E13A exosome complex exonuclease Rrp41 n=1 Tax... 196 6e-49 UniRef50_B5E2A0 Polyribonucleotide nucleotidyltransferase n=202 ... 195 1e-48 UniRef50_B0BXR0 Polyribonucleotide nucleotidyltransferase n=20 T... 195 1e-48 UniRef50_Q6MDI2 Polyribonucleotide nucleotidyltransferase n=17 T... 195 1e-48 UniRef50_C7N5E6 Polyribonucleotide nucleotidyltransferase (Polyn... 194 2e-48 UniRef50_A5VCY9 Polyribonucleotide nucleotidyltransferase n=438 ... 194 2e-48 UniRef50_A8XLU8 Putative uncharacterized protein n=2 Tax=Caenorh... 194 3e-48 UniRef50_Q8GZQ3 Polynucleotide phosphorylase n=19 Tax=cellular o... 193 3e-48 UniRef50_Q72ER6 Polyribonucleotide nucleotidyltransferase n=17 T... 191 2e-47 UniRef50_A9TY02 Predicted protein n=3 Tax=Viridiplantae RepID=A9... 190 3e-47 UniRef50_Q1J1D0 Polyribonucleotide nucleotidyltransferase n=6 Ta... 190 4e-47 UniRef50_Q7V606 Polyribonucleotide nucleotidyltransferase n=50 T... 186 4e-46 UniRef50_Q965N3 Putative uncharacterized protein n=2 Tax=Caenorh... 186 4e-46 UniRef50_Q1G2Y1 Chloroplast polyribonucleotide phosphorylase n=5... 185 7e-46 UniRef50_C3XH48 Polyribonucleotide nucleotidyltransferase n=1 Ta... 184 2e-45 UniRef50_A8PS54 3' exoribonuclease family, domain 2 containing p... 184 2e-45 UniRef50_B3T6G7 Putative 3' exoribonuclease family, domain 1 n=1... 183 4e-45 UniRef50_Q7UR95 Polyribonucleotide nucleotidyltransferase n=5 Ta... 183 4e-45 UniRef50_Q6PBZ8 Exosc4 protein n=10 Tax=Metazoa RepID=Q6PBZ8_DANRE 182 8e-45 UniRef50_A7GX79 Polyribonucleotide nucleotidyltransferase n=17 T... 181 1e-44 UniRef50_B8C7U5 Putative uncharacterized protein (Fragment) n=1 ... 181 2e-44 UniRef50_Q8TGX5 Probable exosome complex exonuclease 2 n=8 Tax=A... 181 2e-44 UniRef50_D2EG59 3' exoribonuclease n=1 Tax=Candidatus Parvarchae... 180 4e-44 UniRef50_C7DI01 3' exoribonuclease n=1 Tax=Candidatus Micrarchae... 178 1e-43 UniRef50_C5A2B8 Probable exosome complex exonuclease 2 n=20 Tax=... 177 2e-43 UniRef50_A6DU91 Polynucleotide phosphorylase/polyadenylase n=1 T... 177 3e-43 UniRef50_Q9NPD3 Exosome complex exonuclease RRP41 n=11 Tax=Coelo... 174 2e-42 UniRef50_B5S2C1 Polyribonucleotide nucleotidyltransferase protei... 173 3e-42 UniRef50_A7RQ94 Predicted protein n=3 Tax=Eumetazoa RepID=A7RQ94... 173 4e-42 UniRef50_Q6L224 Ribonuclease PH n=2 Tax=Thermoplasmatales RepID=... 173 5e-42 UniRef50_Q54EU6 Putative uncharacterized protein n=1 Tax=Dictyos... 172 1e-41 UniRef50_UPI00006A4B1C PREDICTED: similar to LOC495942 protein n... 172 1e-41 UniRef50_C3Z2F7 Putative uncharacterized protein (Fragment) n=4 ... 171 1e-41 UniRef50_Q17533 Putative exosome complex exonuclease RRP41 n=4 T... 170 3e-41 UniRef50_C3N5R4 Probable exosome complex exonuclease 2 n=12 Tax=... 170 4e-41 UniRef50_O26778 Probable exosome complex exonuclease 2 n=5 Tax=M... 168 2e-40 UniRef50_A8NCK3 Putative uncharacterized protein n=2 Tax=Agarica... 167 2e-40 UniRef50_B6K3J3 Exosome complex exonuclease RRP41 n=1 Tax=Schizo... 167 2e-40 UniRef50_Q74NF6 NEQ248 n=1 Tax=Nanoarchaeum equitans RepID=Q74NF... 167 4e-40 UniRef50_Q2NEX4 Putative exosome complex, exonuclease 2 subunit ... 166 5e-40 UniRef50_B8D6B8 Probable exosome complex exonuclease 2 n=1 Tax=D... 163 3e-39 UniRef50_Q6CA11 YALI0D06776p n=12 Tax=Saccharomycetales RepID=Q6... 163 3e-39 UniRef50_Q469M2 Ribosomal RNA-processing protein RRP42 n=5 Tax=A... 162 7e-39 UniRef50_A9A5D0 3' exoribonuclease n=4 Tax=Thaumarchaeota RepID=... 162 7e-39 UniRef50_Q8SYC8 RE67757p n=23 Tax=Coelomata RepID=Q8SYC8_DROME 162 9e-39 UniRef50_C4R4E4 3'-to-5' phosphorolytic exoribonuclease that is ... 161 2e-38 UniRef50_UPI0001925525 PREDICTED: similar to predicted protein n... 160 3e-38 UniRef50_B1L6N6 3' exoribonuclease n=1 Tax=Candidatus Korarchaeu... 160 3e-38 UniRef50_Q9LX74 AT3G46210 protein n=8 Tax=Embryophyta RepID=Q9LX... 155 8e-37 UniRef50_A9VBQ1 Predicted protein n=2 Tax=Fungi/Metazoa group Re... 154 2e-36 UniRef50_C7DI02 3' exoribonuclease n=1 Tax=Candidatus Micrarchae... 153 4e-36 UniRef50_UPI0000D569CA PREDICTED: similar to exosomal 3-5 exorib... 149 7e-35 UniRef50_A8MA85 3' exoribonuclease n=1 Tax=Caldivirga maquilinge... 148 1e-34 UniRef50_B7GAV6 Predicted protein n=2 Tax=Bacillariophyta RepID=... 143 3e-33 UniRef50_Q9YC05 Probable exosome complex exonuclease 2 n=4 Tax=D... 142 1e-32 UniRef50_UPI00006CFE64 3'''' exoribonuclease family, domain 1 co... 140 3e-32 UniRef50_P46948 Exosome complex component SKI6 n=12 Tax=Saccharo... 140 4e-32 UniRef50_B6AK41 3' exoribonuclease family protein, putative n=1 ... 140 5e-32 UniRef50_D0NP71 Exosome complex exonuclease MTR3-like protein n=... 139 7e-32 UniRef50_A2RVK7 At4g27490 n=9 Tax=Magnoliophyta RepID=A2RVK7_ARATH 138 1e-31 UniRef50_Q84T68 Os03g0854200 protein n=9 Tax=Magnoliophyta RepID... 138 1e-31 UniRef50_Q6P0I8 Exosome complex exonuclease MTR3 n=5 Tax=Euteleo... 137 2e-31 UniRef50_UPI000186CF32 Exosome complex exonuclease RRP43, putati... 123 5e-27 UniRef50_UPI00005A29C6 PREDICTED: similar to Exosome complex exo... 118 1e-25 UniRef50_A8PXC4 Putative uncharacterized protein n=1 Tax=Malasse... 112 9e-24 UniRef50_C1M111 Exosome complex exonuclease rrp42 (Ribosomal rna... 109 9e-23 UniRef50_A8PFJ3 3' exoribonuclease family, domain 1 containing p... 106 8e-22 Sequences not found previously or not previously below threshold: UniRef50_C0QTM3 Polyribonucleotide nucleotidyltransferase n=6 Ta... 210 2e-53 UniRef50_A1UU54 Polyribonucleotide nucleotidyltransferase n=155 ... 207 2e-52 UniRef50_A8F725 Polyribonucleotide nucleotidyltransferase n=21 T... 203 4e-51 UniRef50_D1Y1M0 Polyribonucleotide nucleotidyltransferase n=1 Ta... 199 6e-50 UniRef50_C1TQM6 Polyribonucleotide nucleotidyltransferase (Polyn... 198 1e-49 UniRef50_A9NGE2 Polyribonucleotide nucleotidyltransferase n=5 Ta... 198 2e-49 UniRef50_D1PLM8 Polyribonucleotide nucleotidyltransferase n=1 Ta... 195 8e-49 UniRef50_A0LYC0 Polyribonucleotide nucleotidyltransferase n=86 T... 195 1e-48 UniRef50_C9KKD1 Polyribonucleotide nucleotidyltransferase n=1 Ta... 193 4e-48 UniRef50_B2S4C3 Polyribonucleotide nucleotidyltransferase n=2 Ta... 192 9e-48 UniRef50_C7MNH4 Polyribonucleotide nucleotidyltransferase (Polyn... 192 1e-47 UniRef50_B3QZG1 Polyribonucleotide nucleotidyltransferase n=1 Ta... 190 2e-47 UniRef50_B7G0I4 Predicted protein n=2 Tax=Bacillariophyta RepID=... 188 8e-47 UniRef50_B7ATJ6 Putative uncharacterized protein n=2 Tax=Bacteri... 186 5e-46 UniRef50_D1B019 Polyribonucleotide nucleotidyltransferase n=1 Ta... 185 8e-46 UniRef50_C7LKG2 Putative polyribonucleotide nucleotidyltransfera... 185 1e-45 UniRef50_A7I002 Polyribonucleotide nucleotidyltransferase n=2 Ta... 184 2e-45 UniRef50_B1ZS98 Polyribonucleotide nucleotidyltransferase n=7 Ta... 182 1e-44 UniRef50_A5URV5 Polyribonucleotide nucleotidyltransferase n=11 T... 181 2e-44 UniRef50_Q8TCS8 Polyribonucleotide nucleotidyltransferase 1, mit... 179 5e-44 UniRef50_Q7VIL0 Polyribonucleotide nucleotidyltransferase n=2 Ta... 178 1e-43 UniRef50_C1E1G7 Predicted protein n=2 Tax=Micromonas RepID=C1E1G... 177 4e-43 UniRef50_A8Z660 Polyribonucleotide nucleotidyltransferase n=4 Ta... 175 7e-43 UniRef50_A7RP27 Predicted protein (Fragment) n=1 Tax=Nematostell... 174 2e-42 UniRef50_Q30TH2 Polyribonucleotide nucleotidyltransferase n=19 T... 173 3e-42 UniRef50_C4LJ74 Polyribonucleotide nucleotidyltransferase n=28 T... 173 4e-42 UniRef50_B9XS52 Polyribonucleotide nucleotidyltransferase (Fragm... 173 4e-42 UniRef50_A4RTW2 Predicted protein n=4 Tax=cellular organisms Rep... 172 8e-42 UniRef50_A0LV20 Polyribonucleotide nucleotidyltransferase n=63 T... 171 1e-41 UniRef50_Q4JV61 Polyribonucleotide nucleotidyltransferase n=37 T... 170 3e-41 UniRef50_B7GNH2 Polyribonucleotide nucleotidyltransferase n=30 T... 170 4e-41 UniRef50_B0WG77 Polyribonucleotide nucleotidyltransferase 1, mit... 169 6e-41 UniRef50_C1EGG8 Predicted protein n=2 Tax=Micromonas RepID=C1EGG... 168 1e-40 UniRef50_A4RT74 Predicted protein n=2 Tax=Ostreococcus RepID=A4R... 167 2e-40 UniRef50_Q9ZK11 Polyribonucleotide nucleotidyltransferase n=13 T... 166 5e-40 UniRef50_Q4SLK0 Chromosome 15 SCAF14556, whole genome shotgun se... 158 1e-37 UniRef50_B3TBC7 Putative 3' exoribonuclease family, domain 1 n=1... 152 9e-36 UniRef50_D0NT61 Exosome complex exonuclease RRP41-like protein n... 151 1e-35 UniRef50_D0MYG3 Polyribonucleotide nucleotidyltransferase, putat... 151 2e-35 UniRef50_O42872 Exosome complex component ski6 n=1 Tax=Schizosac... 151 2e-35 UniRef50_Q8ZVN0 Probable exosome complex exonuclease 2 n=5 Tax=T... 147 3e-34 UniRef50_A1RXQ5 Ribosomal RNA-processing protein RRP42 n=1 Tax=T... 147 3e-34 UniRef50_B3S0I5 Putative uncharacterized protein n=1 Tax=Trichop... 143 4e-33 UniRef50_B9MZ65 Predicted protein n=6 Tax=Magnoliophyta RepID=B9... 143 6e-33 UniRef50_UPI000186F240 conserved hypothetical protein n=1 Tax=Pe... 142 8e-33 UniRef50_UPI00015B5B6C PREDICTED: similar to ENSANGP00000009222 ... 142 1e-32 UniRef50_Q5TMQ4 AGAP011906-PA n=4 Tax=Culicidae RepID=Q5TMQ4_ANOGA 138 1e-31 UniRef50_B7FVX4 Predicted protein n=1 Tax=Phaeodactylum tricornu... 132 7e-30 UniRef50_D2UZQ3 3'-5' exoribonuclease/RNA-binding protein-like p... 132 7e-30 UniRef50_Q01D77 Putative polynucleotide phosphorylase (ISS) n=1 ... 131 1e-29 UniRef50_B5XC68 Exosome complex exonuclease MTR3 n=2 Tax=Euteleo... 131 2e-29 UniRef50_UPI000180CDA2 PREDICTED: similar to Exosome complex exo... 130 3e-29 UniRef50_C1EDA5 Predicted protein n=1 Tax=Micromonas sp. RCC299 ... 128 1e-28 UniRef50_UPI0001793368 PREDICTED: similar to Exosome complex exo... 128 2e-28 UniRef50_B0ERA1 Exosome complex exonuclease RRP41, putative n=2 ... 126 6e-28 UniRef50_B3S9X0 Putative uncharacterized protein n=1 Tax=Trichop... 124 3e-27 UniRef50_B3T6G8 Putative 3' exoribonuclease family, domain 1 n=1... 123 4e-27 UniRef50_Q4P9I6 Putative uncharacterized protein n=1 Tax=Ustilag... 123 6e-27 UniRef50_A9VAY8 Predicted protein n=1 Tax=Monosiga brevicollis R... 121 1e-26 UniRef50_A0D7C7 Chromosome undetermined scaffold_4, whole genome... 121 2e-26 UniRef50_C4Q0C5 Ribonuclease pH related n=1 Tax=Schistosoma mans... 121 2e-26 UniRef50_Q5BZN7 SJCHGC06185 protein (Fragment) n=1 Tax=Schistoso... 120 5e-26 UniRef50_Q96B26 Exosome complex exonuclease RRP43 n=43 Tax=Metaz... 120 6e-26 UniRef50_A2DCK7 3' exoribonuclease family, domain 1 containing p... 119 6e-26 UniRef50_Q5CPV0 Archeo-eukaryotic exosomal RNAse n=2 Tax=Cryptos... 118 2e-25 UniRef50_D2VA88 Predicted protein n=1 Tax=Naegleria gruberi RepI... 118 2e-25 UniRef50_Q55BB0 Putative uncharacterized protein n=1 Tax=Dictyos... 116 4e-25 UniRef50_D2V2H2 Predicted protein n=1 Tax=Naegleria gruberi RepI... 116 6e-25 UniRef50_Q4SQL7 Chromosome 17 SCAF14532, whole genome shotgun se... 115 9e-25 UniRef50_B2AAV3 Predicted CDS Pa_1_5280 n=11 Tax=Leotiomyceta Re... 115 1e-24 UniRef50_C5KIM5 Exosome complex exonuclease RRP41, putative n=2 ... 114 3e-24 UniRef50_B6HC09 Pc18g05170 protein n=25 Tax=Leotiomyceta RepID=B... 113 4e-24 UniRef50_B6KQ03 3' exoribonuclease, putative n=3 Tax=Toxoplasma ... 112 1e-23 UniRef50_B6ACS1 3' exoribonuclease protein, putative n=1 Tax=Cry... 111 1e-23 UniRef50_D2A0W4 Putative uncharacterized protein GLEAN_08282 n=3... 111 2e-23 UniRef50_Q54Q83 Putative uncharacterized protein n=1 Tax=Dictyos... 110 4e-23 UniRef50_C1E4G7 Predicted protein n=1 Tax=Micromonas sp. RCC299 ... 110 4e-23 UniRef50_C7SB59 Exosome component 9 n=1 Tax=Platynereis dumerili... 109 6e-23 UniRef50_Q1HPJ2 MRNA transport regulator 3 n=1 Tax=Bombyx mori R... 109 9e-23 UniRef50_UPI000192764A PREDICTED: similar to Exosome component 8... 109 1e-22 UniRef50_Q0IT44 Os11g0311300 protein (Fragment) n=11 Tax=Magnoli... 108 2e-22 UniRef50_Q17NN4 Exosome complex exonuclease rrp43 (Ribosomal RNA... 107 3e-22 UniRef50_A7AQY6 Exosome complex exonuclease rrp41, putative n=1 ... 107 3e-22 UniRef50_A7RZV7 Predicted protein n=2 Tax=Eumetazoa RepID=A7RZV7... 107 3e-22 UniRef50_B4Q1V5 GE15642 n=8 Tax=Drosophila RepID=B4Q1V5_DROYA 107 3e-22 UniRef50_D2VE23 3' exoribonuclease domain-containing protein n=1... 106 6e-22 UniRef50_B0CSI5 Predicted protein n=3 Tax=Agaricales RepID=B0CSI... 106 6e-22 UniRef50_Q8T4A9 Rrp45 n=2 Tax=melanogaster group RepID=Q8T4A9_DROME 105 1e-21 UniRef50_Q4DZV2 Ribosomal RNA processing protein 41A, putative n... 104 3e-21 UniRef50_Q10205 Exosome complex component rrp43 n=1 Tax=Schizosa... 103 5e-21 UniRef50_UPI0001926EAD PREDICTED: similar to 3 exoribonuclease n... 102 7e-21 UniRef50_Q74ML0 NEQ111 n=1 Tax=Nanoarchaeum equitans RepID=Q74ML... 102 8e-21 UniRef50_UPI000180B7A0 PREDICTED: similar to Exosome component 9... 102 1e-20 UniRef50_B7GDQ5 Predicted protein (Fragment) n=1 Tax=Phaeodactyl... 102 1e-20 UniRef50_B0XFX8 mRNA transport regulator 3 n=2 Tax=Culex quinque... 101 1e-20 UniRef50_C1BMH5 Exosome complex exonuclease MTR3 n=2 Tax=Caligus... 101 2e-20 UniRef50_Q9M209 Nucleolar autoantigen-like protein n=15 Tax=Embr... 100 4e-20 UniRef50_D0N9X4 Exosome complex exonuclease RRP43, putative n=1 ... 100 5e-20 UniRef50_UPI0000DB70B0 PREDICTED: similar to exosome component 9... 99 9e-20 UniRef50_Q7QBX4 AGAP002348-PA (Fragment) n=2 Tax=Endopterygota R... 99 1e-19 UniRef50_B6AFR7 3' exoribonuclease family protein, putative n=1 ... 99 1e-19 UniRef50_Q15024 Exosome complex exonuclease RRP42 n=27 Tax=Eumet... 98 2e-19 UniRef50_UPI0001925D3D PREDICTED: similar to predicted protein n... 98 2e-19 UniRef50_B4LC44 GJ11305 n=2 Tax=Drosophila RepID=B4LC44_DROVI 98 2e-19 UniRef50_Q5CWV7 Archeo-eukaryotice exosomal RNAse PH n=3 Tax=Cry... 98 2e-19 UniRef50_B0CZF3 Predicted protein n=1 Tax=Laccaria bicolor S238N... 98 2e-19 UniRef50_Q8ILI7 Exosome complex exonuclease rrp41, putative n=6 ... 98 2e-19 UniRef50_A9UUZ6 Predicted protein n=1 Tax=Monosiga brevicollis R... 98 3e-19 UniRef50_C4LZA9 Exosome complex exonuclease, putative n=2 Tax=En... 98 3e-19 UniRef50_Q55BJ2 Putative uncharacterized protein n=1 Tax=Dictyos... 97 3e-19 UniRef50_B6K5V8 Exosome complex exonuclease RRP43 n=1 Tax=Schizo... 97 4e-19 UniRef50_A8IE44 3'-5' exoribonuclease PH component of the exosom... 97 6e-19 UniRef50_B3L6X6 Exosome complex exonuclease, putative n=5 Tax=Pl... 97 6e-19 UniRef50_UPI000192526B PREDICTED: similar to predicted protein n... 95 1e-18 UniRef50_D0NV16 Putative uncharacterized protein n=1 Tax=Phytoph... 95 1e-18 UniRef50_C4WV26 ACYPI003501 protein n=2 Tax=Acyrthosiphon pisum ... 95 2e-18 UniRef50_Q5RKV6 Exosome complex exonuclease MTR3 n=9 Tax=Eutheri... 95 2e-18 UniRef50_Q9VW53 Mtr3 n=14 Tax=Drosophila RepID=Q9VW53_DROME 95 2e-18 UniRef50_B0XFZ4 Exosome complex exonuclease RRP46 n=2 Tax=Culici... 94 4e-18 UniRef50_B0EPF7 Exosome complex exonuclease RRP42, putative n=2 ... 93 5e-18 UniRef50_Q5KHU0 Putative uncharacterized protein n=1 Tax=Filobas... 93 5e-18 UniRef50_Q9NQT4 Exosome complex exonuclease RRP46 n=10 Tax=Chord... 93 6e-18 UniRef50_C1E415 Predicted protein (Fragment) n=2 Tax=Micromonas ... 93 6e-18 UniRef50_C1BRT2 Exosome complex exonuclease RRP43 n=1 Tax=Caligu... 93 7e-18 UniRef50_Q9SSE1 MLP3.20 protein n=17 Tax=Embryophyta RepID=Q9SSE... 93 9e-18 UniRef50_B6ACQ4 3' exoribonuclease family protein, putative n=1 ... 92 1e-17 UniRef50_Q01E66 Putative exonuclease RRP41 (ISS) n=1 Tax=Ostreoc... 92 1e-17 UniRef50_UPI0000E45C6E PREDICTED: similar to SCL75 protein n=1 T... 92 1e-17 UniRef50_C4LW17 3' exoribonuclease family protein n=3 Tax=Entamo... 92 2e-17 UniRef50_D0NSZ6 Exosome complex exonuclease RRP42-like protein n... 92 2e-17 UniRef50_Q9ZUI4 T2K10.14 protein n=2 Tax=Embryophyta RepID=Q9ZUI... 92 2e-17 UniRef50_A9US69 Predicted protein n=1 Tax=Monosiga brevicollis R... 91 2e-17 UniRef50_B0CRI0 Predicted protein n=6 Tax=Agaricomycotina RepID=... 91 3e-17 UniRef50_Q9CRA8 Exosome complex exonuclease RRP46 n=15 Tax=Eutel... 91 3e-17 >UniRef50_C1DI48 Ribonuclease PH n=157 Tax=Bacteria RepID=RNPH_AZOVD Length = 239 Score = 271 bits (692), Expect = 2e-71, Method: Composition-based stats. Identities = 157/227 (69%), Positives = 187/227 (82%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 RP+GR+ +Q+RP+ +TRNYT+HAEGSVLVEFGDT+V+CT S E GVPRFLKGQG+GW+TA Sbjct: 3 RPSGRAPHQLRPIRITRNYTRHAEGSVLVEFGDTRVICTVSAEAGVPRFLKGQGKGWLTA 62 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQA 121 EYGMLPR+T R AREA++G+QGGRT+EIQRLI R+LRAA+D+ LGE T+ +DCDV+QA Sbjct: 63 EYGMLPRATGERMAREASRGRQGGRTLEIQRLIGRSLRAALDMSKLGENTLYVDCDVIQA 122 Query: 122 DGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDS 181 DGGTRTASITGA VALVDAL L + G LK +P+K MVAAVSVGI GE + DL+Y EDS Sbjct: 123 DGGTRTASITGAMVALVDALAVLKKRGALKGDPLKQMVAAVSVGIYQGEPILDLDYPEDS 182 Query: 182 AAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 AETD+NVVMT+ G IEVQGTAEGEPF EEL +LALA L Sbjct: 183 DAETDLNVVMTDAGGFIEVQGTAEGEPFQPEELNAMLALATQGIREL 229 >UniRef50_B9MQJ8 Ribonuclease PH n=58 Tax=Bacteria RepID=RNPH_ANATD Length = 258 Score = 262 bits (669), Expect = 8e-69, Method: Composition-based stats. Identities = 122/224 (54%), Positives = 160/224 (71%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 MR R+ N++RP+ +TRN+ K+AEGS L+E G+TKV+ TA+I++ VP F KG G+GWIT Sbjct: 1 MRQDQRAYNEIRPIKITRNFIKYAEGSCLIEMGNTKVIVTATIDDKVPPFKKGSGEGWIT 60 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 AEY MLPR+T RN R+ K + GR+ EIQRLI RALRA ++ KALGE I +DCDV+Q Sbjct: 61 AEYSMLPRATQQRNVRDINKLRLSGRSHEIQRLIGRALRAGINFKALGERVIIIDCDVIQ 120 Query: 121 ADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVED 180 ADGGTRTASITG +A+ DA +KL + ++ P+ VAAVSVGI +G + DL + ED Sbjct: 121 ADGGTRTASITGGFIAMFDACKKLYDEKIIENFPVTDFVAAVSVGICDGVEMLDLCFEED 180 Query: 181 SAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGE 224 S A DMN+VM + G IE+QGTAEG PF+ E+ LL L + Sbjct: 181 SKAAVDMNLVMNDKGEFIEIQGTAEGAPFSWEQFQKLLELGKQG 224 >UniRef50_A8EY33 Ribonuclease PH n=14 Tax=Rickettsieae RepID=RNPH_RICCK Length = 239 Score = 260 bits (664), Expect = 3e-68, Method: Composition-based stats. Identities = 124/228 (54%), Positives = 164/228 (71%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 MR +GR +NQ+RP++L + +AEGS L++ G T V+C+A+ E VP FL+GQ QGW+T Sbjct: 1 MRQSGRKSNQLRPISLELSPLVNAEGSCLIKIGKTHVICSATCETTVPPFLRGQNQGWVT 60 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 AEYGMLP ST R REA GKQGGRT EIQRLI RA+R +DLK LGE I +DCDV+ Sbjct: 61 AEYGMLPSSTSQRIKREAVLGKQGGRTQEIQRLIGRAMRCVIDLKKLGERQIIIDCDVIN 120 Query: 121 ADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVED 180 ADGGTRTA+ITG+ +AL A++ L++ LK NP+ +AA+S GI GE + DL+Y+ED Sbjct: 121 ADGGTRTAAITGSYIALHLAIRLLMKKSILKVNPLISQIAAISCGIYKGETILDLDYLED 180 Query: 181 SAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 S AE D+N V +G +IEVQGTAE +PF+ E+ L +L LA+ + L Sbjct: 181 SDAEVDINFVFAGNGNLIEVQGTAEKKPFSEEQFLAMLKLAKVGAAEL 228 >UniRef50_Q2P6N2 Ribonuclease PH n=933 Tax=cellular organisms RepID=RNPH_XANOM Length = 241 Score = 258 bits (660), Expect = 8e-68, Method: Composition-based stats. Identities = 153/227 (67%), Positives = 181/227 (79%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 RP+GR+ +Q+RPV + R +T+HAEGSVLV FGDT VLCTAS+E VP FL+G+G+GW+TA Sbjct: 5 RPSGRTADQLRPVRIERAFTRHAEGSVLVSFGDTHVLCTASVENRVPNFLRGKGEGWVTA 64 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQA 121 EYGMLPRSTHTR+ REAA+GKQGGRT+EIQRLI RALRA VD ALGE TITLDCDVLQA Sbjct: 65 EYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCDVLQA 124 Query: 122 DGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDS 181 DGGTRTA+ITGA VAL DA+ L++ G++K +P+ G VAAVSVGI GE V DL+Y EDS Sbjct: 125 DGGTRTAAITGAYVALADAVNLLLKRGEIKKHPLIGAVAAVSVGIYRGEPVLDLDYPEDS 184 Query: 182 AAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 +TDMNVVM + G IE+QGTAEG F +EL LLALA L Sbjct: 185 DCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELNALLALAEKGMGDL 231 >UniRef50_Q83HF6 Ribonuclease PH n=17 Tax=Bacteria RepID=RNPH_TROW8 Length = 247 Score = 254 bits (648), Expect = 2e-66, Method: Composition-based stats. Identities = 114/228 (50%), Positives = 157/228 (68%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +R R+++++RPV + R + +AEGS L+ FG+T+VLC A+ + GVP FL+GQ GWIT Sbjct: 11 LRKNSRAHDEIRPVKIIRGWNIYAEGSALIAFGNTRVLCNATFQRGVPPFLRGQRSGWIT 70 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 AEY MLPRS R+ RE+ KGK GR+ EI RLI R++RA +D AL E TI LDCDVLQ Sbjct: 71 AEYAMLPRSGTERSDRESVKGKISGRSHEISRLIGRSMRAILDRYALEENTIILDCDVLQ 130 Query: 121 ADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVED 180 ADGGTRTA+ITG+ +AL DAL L +P+ V+AVSVG+V + DL+Y ED Sbjct: 131 ADGGTRTAAITGSYIALYDALVWAKNQKILSKHPLTDSVSAVSVGLVGDQIFLDLDYSED 190 Query: 181 SAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 S A+ D+N+V T G+++E+QGTAE PF++ + ++ LA+ L Sbjct: 191 SNAQADINLVFTGSGKLVEIQGTAEKSPFSYGQFEQMMELAKTGCQAL 238 >UniRef50_B2UNC2 Ribonuclease PH n=3 Tax=Verrucomicrobia RepID=B2UNC2_AKKM8 Length = 270 Score = 251 bits (642), Expect = 1e-65, Method: Composition-based stats. Identities = 125/229 (54%), Positives = 156/229 (68%), Gaps = 2/229 (0%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQ--GQGWI 59 R R +Q+RP++ +A SVLV FG TKV+C +IEE VPR++K Q GW+ Sbjct: 12 RQDKRLVDQLRPISFETGIAPNATASVLVTFGRTKVICAVTIEEDVPRWMKVQRVEGGWL 71 Query: 60 TAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVL 119 TAEY MLP ST R R+ GK GR+ EIQRLI R+LRAAVDL +G+ TI +DCDVL Sbjct: 72 TAEYSMLPYSTLDRKRRDITAGKLDGRSSEIQRLIGRSLRAAVDLGKIGQRTIWVDCDVL 131 Query: 120 QADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVE 179 QADGGTRTASITGA VAL A+ KLV GKL +PMK +V+AVSVGI+ GEA+ DL YVE Sbjct: 132 QADGGTRTASITGASVALAIAVNKLVAEGKLAESPMKRLVSAVSVGILEGEALLDLCYVE 191 Query: 180 DSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 D AE DMN+VMT+ G +EVQG+ E FT +++ +L L R + Sbjct: 192 DKDAEVDMNLVMTDQGEFVEVQGSGEEAVFTADQMNRMLELGRKGLEEI 240 >UniRef50_Q2JKT3 Ribonuclease PH n=22 Tax=Bacteria RepID=RNPH_SYNJB Length = 244 Score = 251 bits (640), Expect = 2e-65, Method: Composition-based stats. Identities = 128/230 (55%), Positives = 160/230 (69%), Gaps = 5/230 (2%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 RP R+ Q+RPV+ R++T++A GSVLV+FG T VLCTAS+ E VP FL+ GQGW+TA Sbjct: 5 RPDNRTAAQLRPVSFERHFTRYAPGSVLVKFGHTHVLCTASVAEEVPPFLQNTGQGWLTA 64 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQA 121 EY MLP +T R RE K GRT EIQRLI R+LRAA+D + LG TIT+D DVLQA Sbjct: 65 EYRMLPGATQQRQPREML--KLSGRTAEIQRLIGRSLRAALDFRKLGSRTITVDADVLQA 122 Query: 122 DGGTRTASITGACVALVDALQKLVENGKL---KTNPMKGMVAAVSVGIVNGEAVCDLEYV 178 DGGTRTA+ITG VAL DA+ L + G L + +P++ VAA+SVGIV GE + DL Y Sbjct: 123 DGGTRTAAITGGYVALHDAITWLYKQGALDPAQGSPLRQQVAALSVGIVQGEVLVDLCYE 182 Query: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 EDS AE DMN+VM E G IE+QGTAE F+ +LL +L +A+ L Sbjct: 183 EDSQAEVDMNIVMNEQGSFIEIQGTAEAACFSRPQLLQMLEMAQAGIQEL 232 >UniRef50_B1I4W9 Ribonuclease PH n=67 Tax=Bacteria RepID=RNPH_DESAP Length = 261 Score = 251 bits (640), Expect = 2e-65, Method: Composition-based stats. Identities = 136/221 (61%), Positives = 164/221 (74%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +R GR+ Q+RPV +TR+Y K+AEGS L+E GDT+V+CTASI+ VP FLKG G+GW+T Sbjct: 2 IRVDGRAPAQMRPVYITRHYNKYAEGSALIEVGDTRVICTASIDNRVPTFLKGAGKGWVT 61 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 AE+GMLPR+T R RE+ KG GGR++EIQRLI R+LRA VDL ALGE T+ LDCDV+Q Sbjct: 62 AEFGMLPRATGVRGIRESVKGHPGGRSLEIQRLIGRSLRAVVDLPALGERTVILDCDVIQ 121 Query: 121 ADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVED 180 ADGGTRTA+ITG VALVDA+Q LV G P+ VAA SVG+ GEAV DL + ED Sbjct: 122 ADGGTRTAAITGGFVALVDAMQTLVTEGVTPRLPVLDYVAATSVGLFEGEAVLDLCFAED 181 Query: 181 SAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALA 221 SAAE D NVVMT GR +EVQGT EG F ++ LL LA Sbjct: 182 SAAEVDFNVVMTGTGRFVEVQGTGEGTTFERADVDRLLDLA 222 >UniRef50_A1KID0 Ribonuclease PH n=18 Tax=Bacteria RepID=RNPH_MYCBP Length = 259 Score = 247 bits (631), Expect = 2e-64, Method: Composition-based stats. Identities = 130/228 (57%), Positives = 163/228 (71%), Gaps = 1/228 (0%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR ++++RPV +TR +T++ GSVL+EFG TKVLCTAS+ EGVPR+ K G GW+TA Sbjct: 4 REDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGWLTA 63 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQA 121 EY MLP +TH+R+ RE+ +G+ GRT EI RLI R+LRA +DL ALGE TI +DCDVLQA Sbjct: 64 EYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQA 123 Query: 122 DGGTRTASITGACVALVDALQKLVENGKLK-TNPMKGMVAAVSVGIVNGEAVCDLEYVED 180 DGGTRTA+ITGA VAL DA+ L GKL P+ +AAVSVG+V+G DL Y ED Sbjct: 124 DGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEED 183 Query: 181 SAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 S AE DMNVV T+ G ++E+QGT EG F L LL +A G + L Sbjct: 184 SRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTL 231 >UniRef50_D0DA55 Ribonuclease PH n=2 Tax=Rhodobacteraceae RepID=D0DA55_9RHOB Length = 296 Score = 247 bits (631), Expect = 2e-64, Method: Composition-based stats. Identities = 130/228 (57%), Positives = 166/228 (72%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 MRP+GR +++R V++ TKHAEGS L++ GDT+V+CTAS+EE VP F+KG G GW+T Sbjct: 60 MRPSGRHLSEMRTVSIETGITKHAEGSCLIKVGDTQVICTASLEERVPPFIKGSGLGWVT 119 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 AEYGMLPRST +R REA GKQGGRT+EIQRLI R+LRA VD ALGE IT+DCDV+Q Sbjct: 120 AEYGMLPRSTGSRMRREATSGKQGGRTVEIQRLIGRSLRAGVDRVALGERQITIDCDVIQ 179 Query: 121 ADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVED 180 ADGGTR ASITG VAL A+ KL++ G +KT+P+ VAAVS GI G+ + DL+Y ED Sbjct: 180 ADGGTRCASITGGWVALRLAVNKLMKAGDVKTDPLVSPVAAVSCGIYAGQPILDLDYPED 239 Query: 181 SAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 S A D N ++ DG++IEVQ +AEG F+ ++ L+ LA L Sbjct: 240 SEAGVDGNFILRGDGQLIEVQMSAEGATFSRAQMSELMDLAEKGVAQL 287 >UniRef50_C9KNG5 tRNA nucleotidyltransferase n=2 Tax=Firmicutes RepID=C9KNG5_9FIRM Length = 248 Score = 245 bits (625), Expect = 1e-63, Method: Composition-based stats. Identities = 132/228 (57%), Positives = 162/228 (71%), Gaps = 3/228 (1%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 RP R+ + +RP + R++ K+ GSVL+E G+TKV+C ASIE+ VP FL+G G+GWI A Sbjct: 3 RPDRRTADALRPYEMHRHFQKYPAGSVLIEMGNTKVICAASIEDRVPFFLRGTGEGWIAA 62 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQA 121 EY +LP +T TR REA +GKQ GRT EI+RLI R+LR+ VD KALGE TI +DCDV+QA Sbjct: 63 EYSLLPSATETRTQREAVRGKQSGRTQEIERLIGRSLRSVVDTKALGERTIMIDCDVIQA 122 Query: 122 DGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGI-VNGEAVCDLEYVED 180 DGGTRTASITGA VALV+A E GK+ P+K ++A+SVG+ G + DL Y ED Sbjct: 123 DGGTRTASITGAFVALVEACASFYEKGKI--FPVKDFLSAISVGVSHEGVPILDLCYEED 180 Query: 181 SAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 S A DMNVVMT GR +EVQGT EG PFTHEEL LLAL L Sbjct: 181 SRAIVDMNVVMTGVGRFVEVQGTGEGRPFTHEELGELLALGEKGCREL 228 >UniRef50_B7KB81 Ribonuclease PH n=7 Tax=Bacteria RepID=RNPH_CYAP7 Length = 242 Score = 244 bits (624), Expect = 1e-63, Method: Composition-based stats. Identities = 119/227 (52%), Positives = 155/227 (68%), Gaps = 2/227 (0%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 RP R +Q+RP+ NY++ GSVL G+T+VLCTA+I+ VP+FL G+GW+TA Sbjct: 5 RPDSRQPDQLRPILFETNYSRFRVGSVLAHCGETRVLCTATIQPNVPKFLLNSGKGWLTA 64 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQA 121 EY MLP +T R +RE + GRT EIQRLI R+LRA +D + LGE TI +D DVLQA Sbjct: 65 EYRMLPGATPERQSRELMQ--LSGRTQEIQRLIGRSLRACLDFERLGERTIIIDTDVLQA 122 Query: 122 DGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDS 181 D GTRT +ITG +AL A++KL+E G+L+ +P+K VAAVSVG++ GE DL Y ED+ Sbjct: 123 DAGTRTTAITGGYIALGLAIKKLLEVGELQESPLKLPVAAVSVGLIEGEPFLDLNYAEDT 182 Query: 182 AAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 AAE D NVVMT + +IEVQGTAE F+ +L LL LA+ L Sbjct: 183 AAEVDFNVVMTGNLDLIEVQGTAESGSFSRLQLNQLLDLAQTGIQEL 229 >UniRef50_C1RJ73 RNAse PH n=1 Tax=Cellulomonas flavigena DSM 20109 RepID=C1RJ73_9CELL Length = 328 Score = 241 bits (616), Expect = 1e-62, Method: Composition-based stats. Identities = 133/226 (58%), Positives = 160/226 (70%), Gaps = 2/226 (0%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +R GR +++RPVT+TR + EGSVLVEFG TKVLC AS EGVPR+ KG G+GW+T Sbjct: 72 VRKDGRRADELRPVTITRRFLDAGEGSVLVEFGGTKVLCVASFTEGVPRWRKGSGEGWVT 131 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 AEY MLPR+T++R+ RE+ +GK GGRT EI RL+ R+LRA VD+ ALGE TI LDCDVLQ Sbjct: 132 AEYAMLPRATNSRSDRESVRGKVGGRTHEISRLVGRSLRAVVDVAALGENTIVLDCDVLQ 191 Query: 121 ADGGTRTASITGACVALVDALQKLVENGKLKT--NPMKGMVAAVSVGIVNGEAVCDLEYV 178 ADGGTRTA+ITGA VAL DA+ +K ++ VAA+SVG+V+G V DL Y Sbjct: 192 ADGGTRTAAITGAYVALADAVAWATTKRLVKPGRTVLRDSVAAISVGVVDGVPVLDLPYE 251 Query: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGE 224 ED AETDMNVV T G +EVQGTAE PF EL LL LA Sbjct: 252 EDVRAETDMNVVTTGAGAFVEVQGTAEHAPFDRAELDALLDLAVAG 297 >UniRef50_D1CFI4 Ribonuclease PH n=3 Tax=Bacteria RepID=D1CFI4_THET1 Length = 245 Score = 241 bits (615), Expect = 1e-62, Method: Composition-based stats. Identities = 124/228 (54%), Positives = 152/228 (66%), Gaps = 3/228 (1%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +R GR N++RP ++ GS +++ G TKVLC ASI+EGVP+FL+G GQGW+T Sbjct: 6 IRVDGRKPNELRPHSIEIYPLAFPPGSAIIQCGVTKVLCAASIQEGVPKFLEGTGQGWLT 65 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 AEY MLP ST TR RE+ G+ GRT EIQRLI R+LRAAV L +GE TI +DCDVLQ Sbjct: 66 AEYSMLPASTQTRTPRESHTGRLQGRTQEIQRLIGRSLRAAVKLDQIGEITIIVDCDVLQ 125 Query: 121 ADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVED 180 ADGGTRTASITG VA V AL+K+ + + VAAVSVGIVNG + DL Y ED Sbjct: 126 ADGGTRTASITGGYVATVLALRKIFPDTYRD---LVSPVAAVSVGIVNGTPMLDLNYAED 182 Query: 181 SAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 S A+TD+NVV G IE+Q TAE F+ EEL +L+LA L Sbjct: 183 STADTDLNVVKNHLGDYIEIQATAERVSFSREELDAMLSLADKGIAEL 230 >UniRef50_Q7U9I1 Ribonuclease PH n=14 Tax=Cyanobacteria RepID=RNPH_SYNPX Length = 249 Score = 233 bits (595), Expect = 3e-60, Method: Composition-based stats. Identities = 112/227 (49%), Positives = 150/227 (66%), Gaps = 2/227 (0%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR ++RP ++ + A S++V G T VLC+ S+EE VPR+ +G G GW++A Sbjct: 8 RADGRGATELRPFSVDWDPMSFALSSLIVRTGRTAVLCSVSLEEDVPRWRRGNGCGWLSA 67 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQA 121 EY +LP ST R +RE K GRT EIQRLI R+LRA +D+ ALGE T+ +DCDV+QA Sbjct: 68 EYRLLPGSTPQRQSRELM--KLSGRTQEIQRLIGRSLRAVLDMDALGERTLLIDCDVIQA 125 Query: 122 DGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDS 181 D GTRTASITGA +AL A L G L +P++ +AAVSVG+++G + DL+Y EDS Sbjct: 126 DAGTRTASITGAWIALRRACDLLRSQGVLTQDPIRQQLAAVSVGLIDGTPLLDLDYSEDS 185 Query: 182 AAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 A+ D+NVV DGR++E+QGTAE PF+ EL +L LA L Sbjct: 186 RADVDLNVVTAGDGRLLELQGTAEQAPFSRSELDAMLNLAESGLQEL 232 >UniRef50_C2D8L5 tRNA nucleotidyltransferase n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D8L5_9ACTN Length = 272 Score = 232 bits (593), Expect = 6e-60, Method: Composition-based stats. Identities = 117/227 (51%), Positives = 153/227 (67%), Gaps = 2/227 (0%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GRS + RP TL R K+A+GS L+ GDT+VLC+A++E+ +P + K GW++A Sbjct: 38 RSYGRSAFEARPCTLERQVMKYADGSCLITCGDTRVLCSATVEDTLPTWRKLSHLGWVSA 97 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQA 121 EY MLP S R RE K GR+MEI+RLI R+LR+ VD LGE TIT+DCDVLQA Sbjct: 98 EYAMLPASAKRRTPREYKGRK--GRSMEIERLIGRSLRSVVDFSKLGEHTITIDCDVLQA 155 Query: 122 DGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDS 181 DGGTRTASI GA VAL DA +K+VE K+ P+ G VAA+S+GIV+GE + DL+Y EDS Sbjct: 156 DGGTRTASIVGAWVALHDACRKMVEADKIARCPLTGQVAAISMGIVHGELLVDLDYPEDS 215 Query: 182 AAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 A+ D+NVVM +DG ++E+QGT E + +L LL + L Sbjct: 216 NADVDLNVVMRDDGGLVEIQGTGERATLSRHDLNALLDASEPALTKL 262 >UniRef50_C1XM20 Ribonuclease PH n=2 Tax=Meiothermus RepID=C1XM20_MEIRU Length = 238 Score = 224 bits (570), Expect = 2e-57, Method: Composition-based stats. Identities = 103/228 (45%), Positives = 134/228 (58%), Gaps = 5/228 (2%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR+ ++RP+TL Y +AEGS LVE G TKVL S+ +GVPR + G+ +GW+ A Sbjct: 3 RKDGRAAQELRPLTLRMGYVHYAEGSALVELGHTKVLVNVSLTDGVPRHVSGR-EGWLMA 61 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQA 121 EY +LPRST R RE + K GRT EIQR + RA RAA+DL L T+ +D DV+QA Sbjct: 62 EYNLLPRSTKERKERE--RQKISGRTAEIQRFLGRAFRAALDLSLLPNKTVVIDADVIQA 119 Query: 122 DGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV-NGEAVCDLEYVED 180 DGGTR AS+ G AL A+ +LV GKL P+ AAVSVG + + + DL +ED Sbjct: 120 DGGTRVASLLGGYAALHMAMDRLVNQGKLDEWPLTEF-AAVSVGWMSDDSLLLDLTQIED 178 Query: 181 SAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 A D+ VV T+ G IIE+ G EG P +L + L Sbjct: 179 ENAWADLTVVATQSGDIIELHGAGEGRPVPRSTYQAMLEMGLAHIPEL 226 >UniRef50_A9FGR1 Ribonuclease PH n=2 Tax=Bacteria RepID=A9FGR1_SORC5 Length = 257 Score = 223 bits (569), Expect = 3e-57, Method: Composition-based stats. Identities = 119/228 (52%), Positives = 145/228 (63%), Gaps = 1/228 (0%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 RP GR+ + RPV + + ++AEGSVL G T VLCTAS+E VP ++ G+G GW+TA Sbjct: 3 RPDGRALDVHRPVEMILGFHRNAEGSVLYRAGRTVVLCTASVEPTVPAWMMGKGAGWLTA 62 Query: 62 EYGMLPRSTHTRNAREAAKGK-QGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 EY M PRS+ R +GK GRT EIQRLI RALRAA+DLK LGE TI +DCDVL+ Sbjct: 63 EYQMHPRSSPARREPRDGRGKAPSGRTQEIQRLIGRALRAAIDLKHLGEQTIAIDCDVLE 122 Query: 121 ADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVED 180 ADGGTRTASIT VAL AL ++ G L+ ++ VAA+SVG + G DL Y ED Sbjct: 123 ADGGTRTASITAGFVALALALDRMRAAGSLEAPVLRDQVAAISVGHLPGGLALDLVYTED 182 Query: 181 SAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 S+A DMNVV T G I+EVQ TAE E EL + LA L Sbjct: 183 SSARVDMNVVATAVGSIVEVQATAEDEAIPRAELDRMTDLALAGVASL 230 >UniRef50_C1CZJ0 Putative tRNA nucleotidyltransferase (Phosphate-dependent exonuclease, Ribonuclease PH, RNase PH) n=1 Tax=Deinococcus deserti VCD115 RepID=C1CZJ0_DEIDV Length = 249 Score = 222 bits (566), Expect = 6e-57, Method: Composition-based stats. Identities = 101/214 (47%), Positives = 133/214 (62%), Gaps = 2/214 (0%) Query: 5 GRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYG 64 GR + RPV++ R HA GS + G T++L T ++E+ ++G+ +GW+TAEY Sbjct: 14 GRGLLEPRPVSVKRGVNPHAPGSAHLIMGRTEILATVTLEDKPAPHMRGKKEGWLTAEYS 73 Query: 65 MLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGG 124 MLPR+T+ R ARE + Q GR EIQRL+ RALRA+VDLK TI +DCDVL ADGG Sbjct: 74 MLPRATNDRQARE--RNLQNGRRHEIQRLLGRALRASVDLKYFRNQTIYVDCDVLVADGG 131 Query: 125 TRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAE 184 TR ASI AL D +L+ +G+L P+ V A+SVG+V E DL+Y ED A Sbjct: 132 TRVASILAGHAALHDFCDRLINSGQLSEWPLTHKVGAISVGLVGEEVRVDLDYAEDKVAR 191 Query: 185 TDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILL 218 D+NVV T+ G +IEVQG AE P + E LL Sbjct: 192 ADLNVVATDTGLVIEVQGGAEEGPISLAEYSQLL 225 >UniRef50_Q3ABA6 Polyribonucleotide nucleotidyltransferase n=111 Tax=Bacteria RepID=PNP_CARHZ Length = 731 Score = 221 bits (563), Expect = 2e-56, Method: Composition-based stats. Identities = 57/233 (24%), Positives = 96/233 (41%), Gaps = 24/233 (10%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQ 56 +R GR ++VRP+ GS L G T+VL ++ + + L + Sbjct: 325 IRIDGRKTDEVRPIWCEVGLLPRTHGSGLFTRGQTQVLSIVTLGAVGDVQILDDLGIEES 384 Query: 57 GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 Y P S G R + L RAL + + + +TI + Sbjct: 385 KRFMHHYNFPPYSVGEVRPMRG----PGRREIGHGALAERALEPVIPPEEVFPYTIRIVS 440 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNG----EAV 172 +VL+++G T S+ G+ +AL+DA P+K VA V++G++ + Sbjct: 441 EVLESNGSTSMGSVCGSTLALMDA-----------GVPIKAPVAGVAMGLIKEGDEVAIL 489 Query: 173 CDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 D++ +ED+ + D V T+DG I +Q + T + L LA AR Sbjct: 490 TDIQGIEDALGDMDFKVAGTKDG-ITALQMDIKIAGVTRDILTKALAQAREGR 541 Score = 93.9 bits (232), Expect = 4e-18, Method: Composition-based stats. Identities = 50/210 (23%), Positives = 80/210 (38%), Gaps = 19/210 (9%) Query: 12 RPVTLTRN-YTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRST 70 RP+ LT A GSVLV +GDT VL TA+ + +G +T +Y + Sbjct: 17 RPLKLTAGKVATQASGSVLVSYGDTVVLVTATGSKEP---REGIDFFPLTVDYEERFYAV 73 Query: 71 HTRNAREAAK-GKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTAS 129 + G+ + + RLI R +R + I + D A+ Sbjct: 74 GKIPGGFIKREGRPSEKAILSARLIDRPIRPLFPKGFKNDVHIVATVLSVNQDNPPEIAA 133 Query: 130 ITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNV 189 + GA AL L P G + AV VG+V E V + + + + V Sbjct: 134 MNGASAAL-----------TLSHLPFLGPIGAVVVGLVEDELVINPTIEQAEKSRLHLVV 182 Query: 190 VMTEDGRIIEVQGTAEGEPFTHEELLILLA 219 T D ++ V+ A+ P E ++ + Sbjct: 183 AGTRD-AVMMVEAGAQEVP--EEIMIEAIT 209 >UniRef50_Q9RU11 Ribonuclease PH n=2 Tax=Deinococcus RepID=RNPH_DEIRA Length = 246 Score = 217 bits (552), Expect = 3e-55, Method: Composition-based stats. Identities = 94/215 (43%), Positives = 134/215 (62%), Gaps = 2/215 (0%) Query: 5 GRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYG 64 GR RPV++ R HA GS ++ G T++L T ++++ ++G+ +GW+TAEY Sbjct: 11 GRDALTPRPVSVQRGVNPHAPGSAHLKMGRTEILATVTLDDKPAPHMRGKKEGWLTAEYS 70 Query: 65 MLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGG 124 MLPRST R ARE + Q GR EIQRL+ RALR+++DL+ T+ +DCDVL ADGG Sbjct: 71 MLPRSTTDRQARE--RNLQNGRRHEIQRLLGRALRSSMDLRPFKNQTLYVDCDVLVADGG 128 Query: 125 TRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAE 184 TR AS+ AL D +L+ +G+L P+ V A+SVG++ E DL+Y ED A Sbjct: 129 TRVASVLAGHAALHDFCDRLINSGQLSEWPIVHNVGAISVGLIGDELRVDLDYEEDKVAR 188 Query: 185 TDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLA 219 D+NV+ T+ G ++EVQG AE P T +E LL+ Sbjct: 189 ADLNVIATDTGLLVEVQGGAELGPITVDEYTRLLS 223 >UniRef50_B7IE23 Polyribonucleotide nucleotidyltransferase n=3 Tax=Bacteria RepID=PNP_THEAB Length = 697 Score = 214 bits (544), Expect = 3e-54, Method: Composition-based stats. Identities = 51/233 (21%), Positives = 93/233 (39%), Gaps = 24/233 (10%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQ 56 +R GR +++RP+T GS L G+T+ L ++ EE + + +G Sbjct: 320 IRADGRKVDEIRPITCEVGVLPRTHGSALFTRGETQSLGIVTLGAPMEEQIVDTIMEEGT 379 Query: 57 GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 Y P S G R + L RAL+A V + + + + Sbjct: 380 KRFILHYNFPPFSVGEVKPLRG----PGRREIGHGHLAERALKAVVPSEEEFPYVVRVVS 435 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV----NGEAV 172 ++L+++G + A++ +AL+DA P++ VA V++G++ + Sbjct: 436 EILESNGSSSMATVCSGSLALMDA-----------GVPIRTHVAGVAMGLIIEDGQEVVL 484 Query: 173 CDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 D++ +ED + D V T +G I Q + E L L A+ Sbjct: 485 TDIQGLEDHWGDMDFKVAGTRNG-ITAFQMDCKVAGVGEELLKRALQQAKEAR 536 Score = 92.7 bits (229), Expect = 9e-18, Method: Composition-based stats. Identities = 57/217 (26%), Positives = 89/217 (41%), Gaps = 23/217 (10%) Query: 12 RPVTLTRN-YTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRST 70 R + + K + GSV V+FGD+ VL TA+I + R ++G +T EY + Sbjct: 13 RKMIVQHGKVAKQSAGSVWVQFGDSVVLATANISD---RTIEGVDFVPLTVEYQEKFYAA 69 Query: 71 HTRNAREAAK-GKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGT--RT 127 + GK + RLI R +R + L VL DG T Sbjct: 70 GKIPGGFIKREGKPSESAILSARLIDRPIRPLFP--KYLRNDVQLIVTVLSVDGNTPPDV 127 Query: 128 ASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDM 187 I A +AL + P +G+VA V +G V+G+ V + + D+ Sbjct: 128 TGIIAASLAL-----------NISKIPFEGIVAGVRLGYVDGKFVVFPTEEQLEKSRLDI 176 Query: 188 NVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGE 224 V ++D I V+G A+ T EE++ L +A Sbjct: 177 VVAGSKD-AITMVEGEAKE--VTEEEMVNALMVAHDA 210 >UniRef50_D2VEP3 Predicted protein n=1 Tax=Naegleria gruberi RepID=D2VEP3_NAEGR Length = 248 Score = 213 bits (542), Expect = 4e-54, Method: Composition-based stats. Identities = 59/230 (25%), Positives = 99/230 (43%), Gaps = 20/230 (8%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVP-RFLKGQGQGWI 59 +R GR ++++R + N A+GS E G+T+VL V + + I Sbjct: 13 LRVDGRRSHEIRNIKFKLNLFSRADGSAYYEQGNTRVLAAVYGPREVKNKSQMKNDRAII 72 Query: 60 TAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVL 119 EY M ST R + K+ R+ EI +I + + + I + VL Sbjct: 73 NCEYSMATFSTGERKR----QFKKDRRSTEISVVIRQTFESVILTHLYPRTQIDIFMQVL 128 Query: 120 QADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVE 179 QADGGTR A I A +AL+DA PMK V + + G + G + DL Y+E Sbjct: 129 QADGGTRCACINAATLALLDA-----------GIPMKDFVVSCAAGFIQGSPLTDLNYIE 177 Query: 180 DSAAETDMNVV-MTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 D A D+ + + + ++ +Q ++ + ++ +L A + Sbjct: 178 DCAGGPDVPIALLPKHDKVTLLQMDSK---LSLDQFEKVLEHAIEGCKQI 224 >UniRef50_C0QTM3 Polyribonucleotide nucleotidyltransferase n=6 Tax=Aquificales RepID=PNP_PERMH Length = 709 Score = 210 bits (536), Expect = 2e-53, Method: Composition-based stats. Identities = 47/234 (20%), Positives = 90/234 (38%), Gaps = 25/234 (10%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQG----- 55 +R GR +++RP+ + GS + G T+ ++ ++ Sbjct: 317 VRIDGRRPDEIRPIWIRTGLFPRIHGSAIFTRGQTQAFVATTLGAPGEEQIEESIEEGEE 376 Query: 56 QGWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLD 115 + Y P ST A R + L RA+ + + + I + Sbjct: 377 KKRFMLHYNFPPFSTGEARPPRA----PSRREIGHGNLAERAIEPLIPDEEEFPYVIRVV 432 Query: 116 CDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV----NGEA 171 ++L+++G T A++ GA ++L DA PMK VA +++G++ + Sbjct: 433 SEILESNGSTSMATVCGASLSLFDA-----------GVPMKKHVAGIAMGLLKEDDDYVI 481 Query: 172 VCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 + D+ ED + D V T DG + +Q + + + E L L A+ Sbjct: 482 LTDILGDEDHLGDMDFKVAGTRDG-VTSIQMDIKIKGLSKEILQEALEQAKKAR 534 Score = 92.3 bits (228), Expect = 1e-17, Method: Composition-based stats. Identities = 50/218 (22%), Positives = 83/218 (38%), Gaps = 24/218 (11%) Query: 13 PVTLTRNYT-KHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTH 71 P+++ Y K + G+V+V G+T V A I E + +T +Y + Sbjct: 20 PISIETGYFAKQSNGAVIVRQGETAVFVAAVISEEAQADIDF---LPLTVDYREKTYAYG 76 Query: 72 TRNAREAAK-GKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTASI 130 + GK R + + RLI R +R + IT +I Sbjct: 77 KIPGGFVKREGKPTVREILVSRLIDRPIRPMFPKGFFNDVIITAMTLSADDKYDPDVLAI 136 Query: 131 TGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNVV 190 GA AL + P +G VA V V ++GE + + Y + + ++ D+ V Sbjct: 137 VGASAALH-----------ITEAPFEGPVAGVRVCRLDGEFIVNPTYEQRNRSDIDIVVA 185 Query: 191 MTEDGRIIEVQGTAEGEP--------FTHEELLILLAL 220 T+D ++ G+ E F HEE+ L L Sbjct: 186 GTKDAIVMVEGGSEEVSEEVILDAILFAHEEIKKLCDL 223 >UniRef50_C9RL26 Polyribonucleotide nucleotidyltransferase n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RL26_FIBSS Length = 744 Score = 210 bits (534), Expect = 4e-53, Method: Composition-based stats. Identities = 57/239 (23%), Positives = 100/239 (41%), Gaps = 31/239 (12%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTK--VLCTASIEEGVPRF--LKGQGQ 56 +R GR+ +VRP+ + A GS + + G+T+ V+CT + RF L+G+G Sbjct: 338 VRLDGRTTTEVRPIEIEMGVLPRAHGSAIFQRGETQGLVICTLGTKADEQRFESLQGEGA 397 Query: 57 GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 Y P S R + L R+L A + L +TI + Sbjct: 398 KSYMLHYNFPPFSVGECKKL-----GLSRREIGHGHLAERSLAAVLPLPEDFPYTIRVVS 452 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNG------- 169 ++++++G + AS+ G C++L+DA P+K VA +++G+++ Sbjct: 453 EIMESNGSSSMASVCGGCLSLMDA-----------GVPIKAPVAGIAMGLISEKGSVKEG 501 Query: 170 ---EAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 + + D+ ED + D V T +G I Q + T E + L AR Sbjct: 502 GKIKILSDITGTEDHLGDMDFKVTGTAEG-ITAFQMDIKIRGITPELMREALEQARQGR 559 Score = 73.1 bits (178), Expect = 7e-12, Method: Composition-based stats. Identities = 46/221 (20%), Positives = 81/221 (36%), Gaps = 32/221 (14%) Query: 3 PAGRSNNQVRPVTLTRN-YTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 P GR +T K A GS + + GD VL T E K +T Sbjct: 24 PDGRV------ITFETGRIAKQARGSAVAKMGDAFVLSTVCYGEE-----KDGDFFPLTV 72 Query: 62 EYGMLPRSTHTRNAREAAK--GKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVL 119 EY + + + G+ + R+I R +R + + VL Sbjct: 73 EYREKSYAAGRLPGGYSKREPGRPSDEEILSARIIDRPIRP--MFPENFTREVQVIVQVL 130 Query: 120 QADG--GTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEY 177 +D ++ A +++ L P + VAAV V +V+G+ + Y Sbjct: 131 SSDKKFAPDVLGVSAASLSI-----------GLSELPFEQQVAAVRVAVVDGQNIVMPTY 179 Query: 178 VEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILL 218 + + A+ D+ V TED + V+G A + + ++ + Sbjct: 180 DQVAVADLDLVVAGTED-SVCMVEGGAYE--VSEDTMIGAI 217 >UniRef50_D1AX54 Polyribonucleotide nucleotidyltransferase n=2 Tax=Fusobacteriaceae RepID=D1AX54_STRM9 Length = 732 Score = 209 bits (533), Expect = 5e-53, Method: Composition-based stats. Identities = 58/232 (25%), Positives = 101/232 (43%), Gaps = 24/232 (10%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQG 57 R GR +++RP+ + K GS L G+T+ L TA++ +E + ++G+ Sbjct: 340 RADGRKIDEIRPLNAQIDVLKMPHGSALFTRGETQALVTATLGSKEDEQIIDGMEGEYNK 399 Query: 58 WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCD 117 Y P S A G R + L RAL+A + L +T+ + + Sbjct: 400 KFFLHYNFPPFSVGEAGFMRA----PGRRELGHGNLAERALKAVMPLIDDFPYTVRVVSE 455 Query: 118 VLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV----NGEAVC 173 + +++G + ASI G +AL+ A P+KG VA +++G++ N + Sbjct: 456 ITESNGSSSQASICGGSLALMAA-----------GVPIKGTVAGIAMGLIKEAENFTVLT 504 Query: 174 DLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 D++ +ED + D V T+ G I +Q + E E + I L A Sbjct: 505 DIQGLEDHLGDMDFKVAGTKKG-ITAIQMDIKIEGINKEIMEIALTQAHKGR 555 Score = 78.1 bits (191), Expect = 2e-13, Method: Composition-based stats. Identities = 47/216 (21%), Positives = 76/216 (35%), Gaps = 23/216 (10%) Query: 13 PVTLTRN-YTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTH 71 V + + A GSVLV + +GQ +T +Y +T Sbjct: 15 EVKIETGEIARQAGGSVLVT---SGGTTVLVTTTRSKEVKEGQDFFPLTVDYIEKFYATG 71 Query: 72 TRNAREAAK-GKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADG--GTRTA 128 + K + I RLI R +R + + +V+ DG Sbjct: 72 KFPGGFIKRESKPSTEEVLISRLIDRPIRPLFPEGFFN--AVHVVINVVSFDGINMPEDI 129 Query: 129 SITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMN 188 + G AL L P G VA V+VG VNGE + + + + + + ++ Sbjct: 130 ATIGVSFAL-----------GLSDIPFSGPVAGVTVGYVNGEYIINPDKEQRANMDIYLS 178 Query: 189 VVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGE 224 V T+ I V+ A + EE+L + L E Sbjct: 179 VAGTKS-AITMVEAGA--SEVSEEEMLNAIMLGHEE 211 >UniRef50_B6YSI2 Probable exosome complex exonuclease 1 n=33 Tax=Archaea RepID=ECX1_THEON Length = 249 Score = 208 bits (530), Expect = 1e-52, Method: Composition-based stats. Identities = 70/226 (30%), Positives = 103/226 (45%), Gaps = 21/226 (9%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGV-PRFLKGQGQGWIT 60 R GR ++RP+ + K+A+GS VE+G K+L + P+ L+ + + Sbjct: 17 RIDGRKKYELRPIKMEVGVLKNADGSAYVEWGKNKILAAVYGPREIHPKHLQRPDRAILR 76 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 Y M P S R K R++EI ++I AL A+ L+ I + +VLQ Sbjct: 77 VRYNMAPFSVEERK-----KPGPDRRSVEISKVIRGALEPALILEMFPRTAIDIFIEVLQ 131 Query: 121 ADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVED 180 AD GTR A IT A +AL DA PM+ +VAA + G + GE V DL ED Sbjct: 132 ADAGTRVAGITAASLALADA-----------GIPMRDLVAACAAGKIEGEIVLDLNKEED 180 Query: 181 SAAETDMNVV-MTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 + E D+ V M I +Q T +E + + LA + Sbjct: 181 NYGEADVPVAIMPLKNDITLLQMDG---YLTRDEFIEAVRLAIKGA 223 >UniRef50_C1L2N7 Polyribonucleotide nucleotidyltransferase n=48 Tax=Bacteria RepID=PNP_LISMC Length = 723 Score = 208 bits (529), Expect = 1e-52, Method: Composition-based stats. Identities = 57/233 (24%), Positives = 99/233 (42%), Gaps = 24/233 (10%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQ 56 +RP GR N++RP++ GS L G T+ L ++ E + L + Sbjct: 316 IRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLAPLREHQIIDGLGTEEY 375 Query: 57 GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 Y S R A G R + L RAL+ + + +TI L Sbjct: 376 KRFMHHYNFPQFSVGETGPRRA----PGRREIGHGALGERALQYVIPSEEEFPYTIRLVS 431 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV----NGEAV 172 +VL+++G + ASI G+ +A++DA P+K VA +++G+V + + Sbjct: 432 EVLESNGSSSQASICGSTLAMLDA-----------GVPIKAPVAGIAMGLVKLGDDYTIL 480 Query: 173 CDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 D++ +ED + D V T+DG I +Q + + + + L L A+ Sbjct: 481 SDIQGMEDHFGDMDFKVAGTKDG-ITALQMDIKIDGLSRQILDEALTQAKEGR 532 Score = 90.4 bits (223), Expect = 4e-17, Method: Composition-based stats. Identities = 49/215 (22%), Positives = 78/215 (36%), Gaps = 27/215 (12%) Query: 14 VTLTRN-YTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTHT 72 +++ K A G+ L+ +GDT VL A + +T Y S Sbjct: 16 LSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFP----LTVNYEEKMYSVGK 71 Query: 73 RNAREAAK-GKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTASIT 131 + G+ R RLI R +R E IT + D A++ Sbjct: 72 VPGGFLKREGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAAML 131 Query: 132 GACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNVVM 191 G+ VALV + P +G +A V VG ++G+ V + + ++ + V Sbjct: 132 GSSVALV-----------ISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVAG 180 Query: 192 TEDGRIIEVQGTAEGEP---------FTHEELLIL 217 T D I V+ A+ F HEE+ L Sbjct: 181 TYD-AINMVEAGAKEVSEEAMLEAIMFGHEEIKRL 214 >UniRef50_A1UU54 Polyribonucleotide nucleotidyltransferase n=155 Tax=cellular organisms RepID=PNP_BARBK Length = 733 Score = 207 bits (528), Expect = 2e-52, Method: Composition-based stats. Identities = 52/235 (22%), Positives = 95/235 (40%), Gaps = 24/235 (10%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQG 57 R GR + VRP+ GS L G+T+ L A++ +E L G + Sbjct: 317 RIDGRDLSTVRPIQSEVGILPRTHGSALFTRGETQALVVATLGTSEDEQYVDLLTGVCKE 376 Query: 58 WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCD 117 Y P S + G R + +L RA+ + K +TI + + Sbjct: 377 TFLLHYNFPPFSVGETGRLSS----PGRREIGHGKLAWRAIHPMLPTKEAFPYTIRVVSE 432 Query: 118 VLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNG----EAVC 173 + +++G + A++ G +AL+DA P+ VA +++G++ + Sbjct: 433 ITESNGSSSMATVCGTSLALMDA-----------GVPLARPVAGIAMGLIKEGERFVILS 481 Query: 174 DLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 D+ ED + D V T++G I +Q + + T + + I L A+ N + Sbjct: 482 DILGDEDHLGDMDFKVAGTKNG-ITSLQMDIKIDGITEDIMKIALEQAKDGRNHI 535 Score = 99.2 bits (246), Expect = 9e-20, Method: Composition-based stats. Identities = 47/221 (21%), Positives = 82/221 (37%), Gaps = 23/221 (10%) Query: 12 RPVTLTRN-YTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRST 70 RP+T+ + A+G+V+ +G+T VL T + P+ Q +T Y + Sbjct: 14 RPLTIETGRVARQADGAVVATYGETVVLATV-VSAKAPK--PDQDFFPLTVNYQEKTYAV 70 Query: 71 HTRNAREAAK-GKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQAD--GGTRT 127 + + I RLI R +R + + + V+Q D Sbjct: 71 GKIPGGYFKRESRPSENETLISRLIDRPIRPLFVDDYKNDTQVIV--SVIQHDLENNPDI 128 Query: 128 ASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDM 187 S+ A AL L P G +A VG NG V + E ++ D+ Sbjct: 129 LSMIAASAAL-----------TLSGIPFMGPIAGARVGYCNGHYVLNPTLDEMPESKLDL 177 Query: 188 NVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 V TE+ ++ V+ +E + E +L + + P+ Sbjct: 178 VVAGTEN-AVLMVE--SEAHELSEEVMLGAITFGQKGFQPV 215 >UniRef50_Q9S7G6 Polynucleotide phosphorylase n=36 Tax=cellular organisms RepID=Q9S7G6_ARATH Length = 991 Score = 207 bits (526), Expect = 4e-52, Method: Composition-based stats. Identities = 62/240 (25%), Positives = 98/240 (40%), Gaps = 31/240 (12%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQ 56 R GR ++VRP+ +Y GS L GDT+VLCT ++ E L G + Sbjct: 363 FRVDGRHVDEVRPIYCESHYLPALHGSALFSRGDTQVLCTVTLGAPAEAQSLDSLVGPPK 422 Query: 57 GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 Y P T+ R G R + L +AL A + + +TI ++ Sbjct: 423 KRFMLHYSFPPYCTNEVGKR----GGLNRREVGHGTLAEKALLAVLPPEEAFPYTIRINS 478 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV--------- 167 +V+ +DG T AS+ G +AL+DA P++ VA VSVG++ Sbjct: 479 EVMSSDGSTSMASVCGGSMALMDA-----------GIPLRAHVAGVSVGLITDVDPSSGE 527 Query: 168 --NGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 + V D+ +ED + D + T DG + +Q + + + L AR Sbjct: 528 IKDYRIVTDILGLEDHLGDMDFKIAGTRDG-VTAIQLDIKPAGIPLDIVCESLENAREAR 586 Score = 70.7 bits (172), Expect = 3e-11, Method: Composition-based stats. Identities = 44/217 (20%), Positives = 76/217 (35%), Gaps = 22/217 (10%) Query: 12 RPVTLTRN-YTKHAEGSVLVEFGDTKVLCTAS-IEEGVPRFLKGQGQGWITAEYGMLPRS 69 R V+ + A GSV++ +TKVL T + + PR +T +Y + Sbjct: 62 RVVSFETGKIARFANGSVVLGMDETKVLSTVTCAKTDSPR-----DFLPLTVDYQEKQYA 116 Query: 70 THTRNAREAAK-GKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTA 128 + G R + RLI R +R E I VL +DG Sbjct: 117 QGLIPNTYMRREGAPKERELLCGRLIDRPIRPLFPTGFYHEVQIMA--SVLSSDGKQDPD 174 Query: 129 SITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMN 188 + A L P G + + +G + G+ V + E S+++ ++ Sbjct: 175 ---------ILAANASSAALMLSDVPWGGPIGVIRIGRICGQFVVNPTMDELSSSDLNLI 225 Query: 189 VVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 T D + + + ++L L LA E+ Sbjct: 226 YACTRDKT---MMIDVQSREISEKDLAAALRLAHPEA 259 >UniRef50_Q0AYI2 Polyribonucleotide nucleotidyltransferase n=70 Tax=Bacteria RepID=PNP_SYNWW Length = 703 Score = 206 bits (524), Expect = 6e-52, Method: Composition-based stats. Identities = 52/232 (22%), Positives = 94/232 (40%), Gaps = 24/232 (10%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQG 57 R GR +++R V+ + GS L G T+VL ++ EE L + + Sbjct: 313 RVDGRKLDEIRKVSCEVGFLPRPHGSGLFTRGQTQVLSVTTLGAISEEQRLDGLGIEEKK 372 Query: 58 WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCD 117 Y P ST G R + L RAL A + + +TI + + Sbjct: 373 RYIHHYNFPPYSTGETKPMRG----PGRREIGHGALAERALLAVIPSEEEFPYTIRVVSE 428 Query: 118 VLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNG----EAVC 173 VL+++G + S+ G+ ++L+ A P+K V+ +++G+V + Sbjct: 429 VLESNGSSSMGSVCGSTLSLMHA-----------GVPIKAPVSGIAMGLVKEGERFAIMS 477 Query: 174 DLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 D++ +ED+ + D + TE G + +Q + E + L AR Sbjct: 478 DIQGIEDALGDMDFKLAGTEKG-VTALQMDIKITGVNREIVEAALKQAREGR 528 Score = 110 bits (274), Expect = 6e-23, Method: Composition-based stats. Identities = 52/219 (23%), Positives = 88/219 (40%), Gaps = 26/219 (11%) Query: 12 RPVTLTRN-YTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRST 70 RP+ + + A G+ L+ +GDT VL TA+ + +G +T +Y + Sbjct: 13 RPLIVEIGQVAQQANGAALMRYGDTVVLVTATAAKQP---REGIDFFPLTVDYEEKQYAV 69 Query: 71 HTRNAREAAK-GKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTAS 129 + G+ + RLI R +R E + ++ D + Sbjct: 70 GKIPGGFIKREGRATAQATLSARLIDRPIRPLFPKGFRNEIHVVATILSVEKDNAPDVTA 129 Query: 130 ITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNV 189 ITGA VAL + P G VAAV VG+V+GE + + + ++ + V Sbjct: 130 ITGASVAL-----------SISDIPFAGPVAAVIVGLVDGELIINPTVEQHQKSDLHLAV 178 Query: 190 VMTEDGRIIEVQGTAEGEP---------FTHEELLILLA 219 T++ I+ V+G A P F HEE+ ++ Sbjct: 179 AGTKE-AIMMVEGGANEVPEETMRDAIFFAHEEIKKIVD 216 >UniRef50_Q1IQ54 Polyribonucleotide nucleotidyltransferase n=96 Tax=Bacteria RepID=PNP_ACIBL Length = 815 Score = 205 bits (522), Expect = 9e-52, Method: Composition-based stats. Identities = 53/232 (22%), Positives = 95/232 (40%), Gaps = 24/232 (10%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQG 57 RP GR+ +Q+R + + + GS + G+T+ L T ++ + +G+ + Sbjct: 318 RPDGRAFDQIRQIWIEVDVLPRTHGSAVFTRGETQALVTTTLGTGDDMQRMEGFEGEAKK 377 Query: 58 WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCD 117 Y P S A G R + L RAL A + + + + + D Sbjct: 378 RFMLHYNFPPFSVGEVAFLRGA----GRREIGHGALAERALSAVLPSEDKWPYAMRVVSD 433 Query: 118 VLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV----NGEAVC 173 +L+++G + ASI G ++L+DA P+K VA +++G+V + + Sbjct: 434 ILESNGSSSMASICGGSLSLMDA-----------GVPLKAPVAGIAMGLVKEGDDYAILT 482 Query: 174 DLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 D+ ED + D V T G I +Q + T + + L AR Sbjct: 483 DIAGAEDHYGDMDFKVAGTTQG-ITALQMDIKIGGITAQIMREALEQARRGR 533 Score = 101 bits (252), Expect = 2e-20, Method: Composition-based stats. Identities = 45/213 (21%), Positives = 79/213 (37%), Gaps = 19/213 (8%) Query: 14 VTLTRN-YTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTHT 72 ++ K A GS +V G + VL TA +G +T +Y + Sbjct: 18 LSFETGKLAKQAHGSAIVRSGQSVVLATACANADP---REGIDFFPLTVDYREYTYAGGR 74 Query: 73 RNAREAAK-GKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTASIT 131 + G+ + + R I R +R E + ++ I Sbjct: 75 FPGGFIKREGRPSEKEILTSRQIDRPIRPLFPEGFRCETQVIAMVLSADSENDPDVCGIN 134 Query: 132 GACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNVVM 191 GA AL + P G + AV VG++ G+ + + Y E A++ ++ VV Sbjct: 135 GASAALA-----------VSDIPFNGPIGAVRVGLIEGQNIVNPTYDEMRASKLNIMVVG 183 Query: 192 TEDGRIIEVQGTAEGEPFTHEELLILLALARGE 224 T +G I+ ++ A T EE++ + GE Sbjct: 184 TAEG-IVMIESGAHEA--TEEEVVSAIEFGHGE 213 >UniRef50_C0R0E0 Polyribonucleotide nucleotidyltransferase n=2 Tax=Brachyspira RepID=PNP_BRAHW Length = 712 Score = 205 bits (522), Expect = 1e-51, Method: Composition-based stats. Identities = 51/233 (21%), Positives = 93/233 (39%), Gaps = 24/233 (10%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQ 56 MRP GR+ +++RP+T N GS L G T+ L ++ + + + G+ Sbjct: 312 MRPDGRALDEIRPITTMTNLIPRVHGSALFTRGQTQCLSIVTLGSEKDAQLMDDIYGKEN 371 Query: 57 GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 Y P S G G R + L R+ A + K +TI + Sbjct: 372 KTFMLHYNFPPFSVGEV----GRYGAPGRREIGHGNLAERSFNAVLPPKDKFPYTIRVVA 427 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGI----VNGEAV 172 ++L+++G + A+I + ++L+ A P+ VA +++G+ + + Sbjct: 428 EILESNGSSSMATICASTMSLLSA-----------GVPLNASVAGIAMGLATYKDGYKIL 476 Query: 173 CDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 D++ VED + D V T G I Q + + + L L A+ Sbjct: 477 TDIQGVEDHLGDMDFKVAGTRKG-ITAFQLDIKLTGISAQILKEALEQAKKAR 528 Score = 81.9 bits (201), Expect = 2e-14, Method: Composition-based stats. Identities = 49/214 (22%), Positives = 77/214 (35%), Gaps = 19/214 (8%) Query: 13 PVTLTRNYT-KHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTH 71 + L K A GSV + G+T +L T + P +T Y + Sbjct: 12 ELILETGLLAKQAHGSVTLRLGNTTILATV-VAAKEPNLE--SDFFPLTVNYNEKYYAGG 68 Query: 72 TRNAREAAK-GKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTASI 130 + K + + I R+I R LR E I + D T Sbjct: 69 KIPGGFFKREAKPRDKEILISRIIDRPLRPLFPEGFRNEVQIIPTVLSVDTDMPTDA--- 125 Query: 131 TGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNVV 190 AL + P G VAAV +G NGE + + + E S +E D+ V Sbjct: 126 --------LALIASSAALTISWIPFGGPVAAVRIGYKNGEYIINPKNSELSTSELDIIVA 177 Query: 191 MTEDGRIIEVQGTAEGEPFTHEELLILLALARGE 224 ++D I+ ++G A+ + E + + LA E Sbjct: 178 GSKD-AILMIEGEAKE--VSEEVFIGAIELAHKE 208 >UniRef50_Q0SM46 Polyribonucleotide nucleotidyltransferase n=24 Tax=Spirochaetaceae RepID=PNP_BORAP Length = 722 Score = 204 bits (519), Expect = 2e-51, Method: Composition-based stats. Identities = 50/233 (21%), Positives = 95/233 (40%), Gaps = 25/233 (10%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQ 56 +R GR+ N++R + + GS L G+T+ L ++ +E + + G + Sbjct: 315 IRTDGRTPNEIRDILAEVDILSRTHGSSLFTRGETQALAVTTLGTSIDEQIMDDIDGDKR 374 Query: 57 GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 Y P S + G R + L RAL + + K +TI + Sbjct: 375 LNFMLHYNFPPFSVGE-----TGRLMTGRREIGHGHLAQRALESMIPGKNDFPYTIRVVS 429 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVN----GEAV 172 ++L+++G + A++ ++L+ A P+K VA +++G+++ + Sbjct: 430 EILESNGSSSMATVCAGSMSLMSA-----------GVPVKRQVAGIAMGLISEGDKYVVL 478 Query: 173 CDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 D+ ED + D V TE+G I Q + E T + + L AR Sbjct: 479 SDILGEEDHLGDMDFKVAGTENG-ITGFQMDIKIENVTKQLMRDALEQARVGR 530 Score = 83.8 bits (206), Expect = 4e-15, Method: Composition-based stats. Identities = 46/219 (21%), Positives = 78/219 (35%), Gaps = 24/219 (10%) Query: 5 GRSNNQVRPVTLTRNYT-KHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEY 63 GR + + K A GSVL +G + VL T V L ++ EY Sbjct: 10 GRD-----ELVFETGFMAKQANGSVLATYGGSSVLATVCCSNNVREDLDFV---PLSVEY 61 Query: 64 GMLPRSTHTRNAREAAK-GKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQAD 122 + + GK + + + RLI R +R D + E + Sbjct: 62 NEKYYAAGKIPGGFIKREGKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLATDQL 121 Query: 123 GGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSA 182 + A A+ L P G +AAV + +NG+ + + + E Sbjct: 122 NPPDIVGMNAAFTAVF-----------LSDIPFNGPIAAVRMVYLNGKFIVNPSFEEIHD 170 Query: 183 AETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALA 221 ++ D+ V + +G I V+G A + + LL + A Sbjct: 171 SDLDIVVAGSLNG-ITMVEGGANE--VSEDILLSAIDSA 206 >UniRef50_B9KYR9 Polyribonucleotide nucleotidyltransferase n=53 Tax=Bacteria RepID=PNP_THERP Length = 790 Score = 203 bits (517), Expect = 4e-51, Method: Composition-based stats. Identities = 60/234 (25%), Positives = 95/234 (40%), Gaps = 26/234 (11%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVL--CTASIEEGVP--RFLKGQGQG 57 RP GR +++R + + GS L G T+VL CT +E L + Sbjct: 325 RPDGRKPDEIREIWIQVGLLPRPHGSALFTRGQTQVLTVCTLGTKEEEQFLDSLGIEETK 384 Query: 58 WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCD 117 Y P ST R + L RAL A + + +T+ L + Sbjct: 385 RYMHHYNFPPFSTGEIRRLRG----PSRRDIGHGALAERALLAVLPSEDEFPYTMRLVSE 440 Query: 118 VLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGE------A 171 VL ++G T AS+ G+ +AL+DA P++ VA V++G+V + Sbjct: 441 VLSSNGSTSMASVCGSSLALMDA-----------GVPIRKPVAGVAMGLVTDQTTGRYTI 489 Query: 172 VCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 + D++ +ED+ + D V T DG I +Q + T E + L AR Sbjct: 490 LTDIQGIEDALGDMDFKVAGTRDG-ITAIQMDIKVMGITPEIMRDALEQARRGR 542 Score = 88.8 bits (219), Expect = 1e-16, Method: Composition-based stats. Identities = 49/212 (23%), Positives = 79/212 (37%), Gaps = 19/212 (8%) Query: 12 RPVTLTRN-YTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRST 70 R +T+ + A+G+VLV +G+T VL T G + ++G +T EY + Sbjct: 15 RLLTIETGRVAEQADGAVLVRYGETVVLTTV---VGAKQPVEGIDFFPLTVEYEEKMYAA 71 Query: 71 HTRNAREAAK-GKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTAS 129 + GK + RL R +R E + + S Sbjct: 72 GKIPGGFFRREGKPSEAAILAARLTDRPIRPLFPKGYRNEVQVISTVLSADQENEPDVLS 131 Query: 130 ITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNV 189 I GA AL L P G V AV +G ++GE V + + + D+ V Sbjct: 132 IIGASAAL-----------TLSDIPWYGPVGAVRIGELDGELVINPTSHQLLESRMDIVV 180 Query: 190 VMTEDGRIIEVQGTAEGEPFTHEELLILLALA 221 T D I+ V+G A + + + + A Sbjct: 181 AGTAD-AILMVEGQANE--ISEDRFIEAVVRA 209 >UniRef50_A8F725 Polyribonucleotide nucleotidyltransferase n=21 Tax=Bacteria RepID=PNP_THELT Length = 710 Score = 203 bits (516), Expect = 4e-51, Method: Composition-based stats. Identities = 50/232 (21%), Positives = 88/232 (37%), Gaps = 24/232 (10%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQG 57 R R +RP+T GS L G+T+ L ++ +E + L +G Sbjct: 317 RLDMRKPKDIRPITCETGLLPRVHGSALFTRGETQSLGIVTLGAPMDEQIIDSLLEEGTK 376 Query: 58 WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCD 117 Y P ST R + L RAL+ + + +TI + + Sbjct: 377 RFMLHYNFPPFSTGEVKPLRG----PSRREIGHGHLAERALKFVLPDEDRFPYTIRIVSE 432 Query: 118 VLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV----NGEAVC 173 +L+++G + A++ +AL+DA P+ VA V++G++ + + Sbjct: 433 ILESNGSSSMATVCSGSLALMDA-----------GVPISKHVAGVAMGLILEKDSQIVLT 481 Query: 174 DLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 D+ ED + D V T DG I Q + + + L L A+ Sbjct: 482 DILGAEDHWGDMDFKVAGTRDG-ITAFQMDCKVSGVSADLLERALNQAKEAR 532 Score = 87.3 bits (215), Expect = 4e-16, Method: Composition-based stats. Identities = 48/215 (22%), Positives = 79/215 (36%), Gaps = 19/215 (8%) Query: 12 RPVTLTRN-YTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRST 70 R + K A G+V+ GDT VL TA + + ++G +T E+ + Sbjct: 11 REFIVEHGKVAKQANGAVVARIGDTTVLATAVMSDSA---VEGIDFVPLTVEFQERFYAA 67 Query: 71 HTRNAREAAK-GKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTAS 129 + GK + R I R +R E + + + Sbjct: 68 GKIPGGFIKREGKPSEMAILSARTIDRPIRPLFPKHLRNEVQVVVTVISTDSVNTPDIVG 127 Query: 130 ITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNV 189 + A +AL + P G+VAAV VG+V+G+ V + + D+ V Sbjct: 128 VFAASLAL-----------NISDIPFNGIVAAVRVGLVDGKIVLFPTEDQLQKSLLDIVV 176 Query: 190 VMTEDGRIIEVQGTAEGEPFTHEELLILLALARGE 224 TED I V+G A+ + ++L L A Sbjct: 177 AGTED-TITMVEGEAKE--VSESQMLQALLKAHDA 208 >UniRef50_B3EH06 Polyribonucleotide nucleotidyltransferase n=1 Tax=Chlorobium limicola DSM 245 RepID=PNP_CHLL2 Length = 736 Score = 203 bits (516), Expect = 5e-51, Method: Composition-based stats. Identities = 52/232 (22%), Positives = 91/232 (39%), Gaps = 24/232 (10%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQG 57 R GR+ +VRP+++ A GS L G+T+ L T ++ + L Sbjct: 335 RLDGRTLEEVRPISIELGIIPRAHGSALFTRGETQALVTITLGTKKDAQSVDNLTNNADK 394 Query: 58 WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCD 117 Y P S G G R + L RA++ + +T+ + D Sbjct: 395 KFMLHYNFPPFSVGE----TGRIGSTGRREIGHGNLAERAIKMVAPPEQEFPYTVRIVSD 450 Query: 118 VLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV----NGEAVC 173 +L+++G + AS+ G +AL+D P++ V+ +++G++ N + Sbjct: 451 ILESNGSSSMASVCGGTLALMD-----------GGVPIRKPVSGIAMGLIKEGSNYAVLS 499 Query: 174 DLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 D+ ED + D V T DG I Q + + + L L AR Sbjct: 500 DILGNEDHLGDMDFKVSGTRDG-ITACQMDIKIDGLDYHILESALEQARRGR 550 Score = 95.8 bits (237), Expect = 1e-18, Method: Composition-based stats. Identities = 43/213 (20%), Positives = 76/213 (35%), Gaps = 18/213 (8%) Query: 14 VTLTRN-YTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTHT 72 +++ K A+GSV+V GDT VL T + P Q + EY + Sbjct: 18 ISIETGKMAKQADGSVVVRLGDTMVLATVVSSKKTP--PPNQDYFPLQVEYREKYSAAGK 75 Query: 73 RNAREAAK-GKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTASIT 131 + + + + RLI RALR L E I + Sbjct: 76 FPGGFFKRESRPSEKEILSARLIDRALRPLFPDGYLFETQIIVTVISSDQINDADVLGGL 135 Query: 132 GACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNVVM 191 A A++ + P ++ V VG +NG+ + + + E ++ D+ + Sbjct: 136 AASAAIM-----------VSDIPFHNAMSEVRVGRINGKFIINPDVNELVNSDLDICIGG 184 Query: 192 TEDGRIIEVQGTAEGEPFTHEELLILLALARGE 224 T D I ++G E + + E+L + Sbjct: 185 TTD-TICMLEG--EMKEISEAEMLDAIKFGHDA 214 >UniRef50_A2BKC0 Probable exosome complex exonuclease 1 n=32 Tax=Archaea RepID=ECX1_HYPBU Length = 255 Score = 203 bits (516), Expect = 5e-51, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 111/226 (49%), Gaps = 21/226 (9%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIE-EGVPRFLKGQGQGWI 59 +R GR Q+RP+ + +A+GS LVE+G T+V+ E PR + + I Sbjct: 24 IRHDGRLPEQLRPIRMEVGVLSNADGSALVEYGGTRVIAAVYGPREAHPRHVALPDRAII 83 Query: 60 TAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVL 119 Y M P ST R R +E+ ++I AL A V + I + +VL Sbjct: 84 RCRYHMAPFSTAERKTPA-----PTRREVELSKVIREALEAVVISELYPRTAIDVYMEVL 138 Query: 120 QADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVE 179 Q+DGGTRTA+IT A +AL DA M+ +VA V+VG V+G V D++ +E Sbjct: 139 QSDGGTRTAAITAASLALADA-----------GIAMRDLVAGVAVGKVDGVLVLDIDEIE 187 Query: 180 DSAAETDMNVVM-TEDGRIIEVQGTAEGEPFTHEELLILLALARGE 224 D+ AE DM V M +++ +Q TH+E + L LAR Sbjct: 188 DNYAEADMPVAMAPSLDKVLLLQ---LNGVLTHDEFVKALELARKG 230 >UniRef50_Q6L223 Ribonuclease PH n=1 Tax=Picrophilus torridus RepID=Q6L223_PICTO Length = 239 Score = 202 bits (514), Expect = 8e-51, Method: Composition-based stats. Identities = 66/225 (29%), Positives = 111/225 (49%), Gaps = 20/225 (8%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +R GR+ N++RP+ +T +A+GS +E+G K++ + E P+ + + + Sbjct: 12 LRLDGRAFNEMRPIRITTGVVDNADGSAYIEWGANKIVVAVYVREAYPKHAQNIDKAIVK 71 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 A Y M S R + RTMEI +LI+ AL +A+ ++ L I + +VL+ Sbjct: 72 ARYNMAGFSVEERK-----RPGPDRRTMEISKLISEALESAIMVERLPRAEIDVYIEVLE 126 Query: 121 ADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVED 180 AD GTR AS+T A VA+ DA PMK + + G NG+ V DL ED Sbjct: 127 ADAGTRIASLTAASVAVADA-----------GIPMKDLPVGCTAGKANGKVVLDLSKDED 175 Query: 181 SAAETDMNVV-MTEDGRIIEVQGTAEGEPFTHEELLILLALARGE 224 + + D+ + + + G+II +Q + + +EL + + G Sbjct: 176 NYGDADIPMAILPKSGKIILLQLDGD---VSEQELEEAMEMMLGA 217 >UniRef50_B3EMN6 Polyribonucleotide nucleotidyltransferase n=12 Tax=Bacteria RepID=PNP_CHLPB Length = 734 Score = 201 bits (512), Expect = 1e-50, Method: Composition-based stats. Identities = 51/232 (21%), Positives = 92/232 (39%), Gaps = 24/232 (10%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQG 57 R GR +VRP+++ A GS L G+T+ L ++ + + L + Sbjct: 332 RLDGRKLEEVRPISIELGLIPRAHGSALFTRGETQALVVLTLGTKKDAQMIDTLLDDTEK 391 Query: 58 WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCD 117 Y P S G G R + L RA++ V ++ +TI L + Sbjct: 392 RFMLHYNFPPFSVGE----TGRVGGVGRREIGHGNLAERAVKKVVPSESEFPYTIRLVSE 447 Query: 118 VLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV----NGEAVC 173 +L+++G + AS+ GA +A +D P+ V+ +++G++ N + Sbjct: 448 ILESNGSSSMASVCGATLAAMD-----------GGVPLTKPVSGIAMGLIKEDDNYAVLS 496 Query: 174 DLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 D+ ED + D V T DG I Q + + + L L ++ Sbjct: 497 DILGNEDHLGDMDFKVAGTRDG-ITACQMDIKIDGLDYHILEKALEQSKNGR 547 Score = 91.2 bits (225), Expect = 2e-17, Method: Composition-based stats. Identities = 41/207 (19%), Positives = 73/207 (35%), Gaps = 18/207 (8%) Query: 14 VTLTRN-YTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTHT 72 +T+ K A+G+ +V GDT V+ T P Q + EY + Sbjct: 15 ITIETGKMAKQADGATIVRMGDTMVIATVVSSRTPPS--PNQDFFPMQVEYREKYYAAGK 72 Query: 73 RNAREAAK-GKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTASIT 131 + + + + RLI RALR + I + Sbjct: 73 FPGGFIKRESRPSEKEILSARLIDRALRPLFPNGYYQDTQIIISVISSDQLNDADVLGGI 132 Query: 132 GACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNVVM 191 A A++ + P ++ V VG +NGE V + E + ++ D+++ Sbjct: 133 AASAAIM-----------VSDIPFANSMSEVRVGRINGEFVINPTINELAQSDIDISIGG 181 Query: 192 TEDGRIIEVQGTAEGEPFTHEELLILL 218 T D I ++G E + E+L + Sbjct: 182 TND-TICMLEG--EMNEISEAEMLEAI 205 >UniRef50_Q2GJV5 Polyribonucleotide nucleotidyltransferase n=138 Tax=cellular organisms RepID=PNP_ANAPZ Length = 838 Score = 201 bits (512), Expect = 1e-50, Method: Composition-based stats. Identities = 52/232 (22%), Positives = 95/232 (40%), Gaps = 24/232 (10%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQG 57 R GR+ +Q+R + + + A GS L GDT+ L ++ +E + G + Sbjct: 323 RIDGRAYDQIRNIEIEVDLISKAHGSALFTRGDTQALVITALGTPQDEQIVDGFDGDKRE 382 Query: 58 WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCD 117 Y P + +A G R + +L RA+ + KA +TI + + Sbjct: 383 RFLLHYNFPPYAVGE----ASALRPPGRREIGHGKLAWRAIHPVLPSKADFPYTIRVVSE 438 Query: 118 VLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVN----GEAVC 173 + ++DG + A++ GA +AL+D P+K VA +++G++ + Sbjct: 439 ITESDGSSSMATVCGASLALMD-----------TGVPLKSSVAGIAMGLIKEGDRYAILS 487 Query: 174 DLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 D+ ED + D V T +G I +Q + + L L A+ Sbjct: 488 DILGDEDYLGDMDFKVAGTREG-ITALQMDMKVKGIDFAVLGTALDQAKEGR 538 Score = 82.3 bits (202), Expect = 1e-14, Method: Composition-based stats. Identities = 48/223 (21%), Positives = 84/223 (37%), Gaps = 26/223 (11%) Query: 12 RPVTLTRN-YTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRST 70 R +T+ + A G+V+V++G T VL T ++ + +T ++ + Sbjct: 14 RSLTIESGKIARQAGGAVVVDYGGTSVLATVVSQKSK----EAVDFLPLTVQFLAKSYAV 69 Query: 71 HTRNAREAAK-GKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTR--T 127 + GK R I R+I R++R E + + C++L D + T Sbjct: 70 GKIPGGFFKREGKPSDRETLISRIIDRSIRPLFPSGFSDE--VAVVCNLLSYDASSPPET 127 Query: 128 ASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGE--AVCDLEYVEDSAAET 185 ++ GA AL + P VA +G + GE + + E S + Sbjct: 128 VALIGASAALA-----------ISGIPFHCPVAGARIGYIRGEGRYILNPSADELSVSAL 176 Query: 186 DMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 DM T D I+ V+ +E T E+L L + Sbjct: 177 DMFYART-DTSILMVE--SEAHELTEAEMLGALQFGHEHCEEI 216 >UniRef50_B9E1K8 Polyribonucleotide nucleotidyltransferase n=15 Tax=Clostridiales RepID=PNP_CLOK1 Length = 708 Score = 201 bits (511), Expect = 2e-50, Method: Composition-based stats. Identities = 54/234 (23%), Positives = 96/234 (41%), Gaps = 26/234 (11%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQG 57 R GR ++VRP++ + A G+ L G T+V+ ++ + + + + Sbjct: 312 RVDGREFDEVRPISCEVGFLPRAHGTGLFTRGLTQVMTVVTLGSLGDVQILDGVGLEDSK 371 Query: 58 WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCD 117 Y ST G R + L +AL + ++ +TI L + Sbjct: 372 RYMHHYNFPSYSTGEVRPLRG----PGRREIGHGALAEKALEPLIPMEEQFPYTIRLVSE 427 Query: 118 VLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV------NGEA 171 VL ++G T ASI G+ +AL+DA P+K A +++G+V E Sbjct: 428 VLSSNGSTSQASICGSTLALLDA-----------GVPIKRPAAGIAMGLVTSEDLSQEEI 476 Query: 172 VCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 + D++ +ED + D V TE G I +Q + +++ + L AR Sbjct: 477 LTDIQGLEDFFGDMDFKVGGTEKG-ITAIQFDTKIHGLSNKCIKETLEKARTAR 529 Score = 70.0 bits (170), Expect = 5e-11, Method: Composition-based stats. Identities = 36/181 (19%), Positives = 69/181 (38%), Gaps = 16/181 (8%) Query: 29 LVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTHTRNAREAAK-GKQGGRT 87 L+ +GDT VL A+ + +G ++ EY S + GK + Sbjct: 30 LISYGDTVVLINANASDKP---REGIDFFPLSIEYEERLYSVGKIPGGFIKREGKPSEKA 86 Query: 88 MEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTASITGACVALVDALQKLVEN 147 + R I R LR + + + D ++ GA +AL Sbjct: 87 ILNARAIDRPLRPLFPKGYRNDVQVVCTVLSVDQDNLPNIVAMNGASLAL---------- 136 Query: 148 GKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGE 207 + + P V +V+VG+V+G + + + + ++ V T++ R++ V+ A Sbjct: 137 -CISSIPFITPVGSVAVGLVDGNFIINPNLEDREKSTLNLTVCATKE-RVMMVEAGACEV 194 Query: 208 P 208 P Sbjct: 195 P 195 >UniRef50_C1A3Y1 Polyribonucleotide nucleotidyltransferase n=2 Tax=Bacteria RepID=PNP_GEMAT Length = 732 Score = 200 bits (509), Expect = 3e-50, Method: Composition-based stats. Identities = 55/235 (23%), Positives = 93/235 (39%), Gaps = 26/235 (11%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFL------KGQ 54 +R GR ++VR +++ + A GS L G T+ L A++ G+ Sbjct: 309 LRVDGRKKDEVRAISIDTSVLPRAHGSALFTRGQTQALVAATLGTAKDAQRLDSIKEPGE 368 Query: 55 GQGWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITL 114 Y P ST R + L RAL+ + A +TI + Sbjct: 369 VTRSFMLHYNFPPFSTGEVRPMRGT----SRREIGHGNLAERALQGVLPDFADFPYTIRI 424 Query: 115 DCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVN----GE 170 DVL+++G + AS+ G ++L DA P+K VA V++G++ Sbjct: 425 VSDVLESNGSSSMASVCGGSLSLFDA-----------GVPLKAAVAGVAMGLIKEGERYA 473 Query: 171 AVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 + D+ ED + D V T+DG I +Q + E + + L+ A+ Sbjct: 474 ILTDILGTEDHLGDMDFKVAGTKDG-ITSIQMDIKIEGLDIKIMEEALSQAKAGR 527 Score = 102 bits (255), Expect = 8e-21, Method: Composition-based stats. Identities = 44/219 (20%), Positives = 81/219 (36%), Gaps = 20/219 (9%) Query: 12 RPVTLTRN-YTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRST 70 RP+ + K A GS +V+FG+T VL ++ E +T EY + Sbjct: 11 RPLVIETGRMAKQAAGSAVVQFGETMVLAAVTVSENQSPLPFFP----LTVEYKEKTYAA 66 Query: 71 HTRNAREAAK-GKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTAS 129 + G+ + R+I R++R E + + + + Sbjct: 67 GKIPGGFIKREGRPHDHEILAARIIDRSIRPLFPEGFKNEVQVFIYVISADQENDADVLA 126 Query: 130 ITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNV 189 + A AL P G +A V VG V G V + + + ++ ++ V Sbjct: 127 LVAASFAL-----------NASKIPFLGPIAGVRVGRVQGHWVLNPTFQQLGFSDLELVV 175 Query: 190 VMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 ++D I+ V+G + + E++L L L+ L Sbjct: 176 AGSKD-SIVMVEGGSLE--VSEEDVLESLRLSHDGIREL 211 >UniRef50_B5Y8I4 Polyribonucleotide nucleotidyltransferase n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=PNP_COPPD Length = 697 Score = 199 bits (507), Expect = 5e-50, Method: Composition-based stats. Identities = 50/235 (21%), Positives = 95/235 (40%), Gaps = 24/235 (10%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQG 57 R GR+ +++RP+ + GS L G T+VL T ++ + + + Sbjct: 316 RVDGRAFDEIRPLYAESSVLPKVHGSGLFIRGQTQVLSTVTLGSFSDVQFIDAIGLEEFK 375 Query: 58 WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCD 117 +Y P ST R R + L+ RAL + + + +TI + + Sbjct: 376 RFMHQYDFPPFSTGEVKPRRG----PSRREIGHGALVERALSYLIPSEEVFPYTIRVVSE 431 Query: 118 VLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV----NGEAVC 173 VL+++G T AS + +AL+ A PM V +++G++ + Sbjct: 432 VLESNGSTSMASTCASSIALMSA-----------GVPMARHVGGIAMGLIEYNDENVVLT 480 Query: 174 DLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 D++ +ED + D V T +G I +Q + + + E L + A + + Sbjct: 481 DIQGLEDHLGDMDFKVAGTREG-ITALQLDVKVKGISVETLDKAIDQAEVARSKI 534 Score = 80.0 bits (196), Expect = 7e-14, Method: Composition-based stats. Identities = 46/209 (22%), Positives = 77/209 (36%), Gaps = 27/209 (12%) Query: 23 HAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTHTRNAREAAK-G 81 A G+VL FGDT L T + + +T +Y + K G Sbjct: 28 QANGAVLARFGDTVALSTVLMSSEPKLDIDFF---PLTVDYEEKSYAVGKIPGGFFKKEG 84 Query: 82 KQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQAD--GGTRTASITGACVALVD 139 + + RLI R++R + + +L AD ++ G AL Sbjct: 85 RPTDMEILKARLIDRSIRPMFPDGM--RNEVQVLNMILAADMENPPDIVALNGTAAALA- 141 Query: 140 ALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIE 199 + P+ ++A V VG ++GE V + + E S ++ D+ V T D ++ Sbjct: 142 ----------VSDIPIPELIAGVRVGYIDGEYVLNPTFAEMSESQLDLVVAGTRDSIVMI 191 Query: 200 VQGTAE--------GEPFTHEELLILLAL 220 G AE G F E + ++ L Sbjct: 192 EAGAAEVDKSILIGGLKFAQEGIRQIIDL 220 >UniRef50_D1Y1M0 Polyribonucleotide nucleotidyltransferase n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y1M0_9BACT Length = 751 Score = 199 bits (507), Expect = 6e-50, Method: Composition-based stats. Identities = 52/235 (22%), Positives = 94/235 (40%), Gaps = 26/235 (11%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI-----EEGVPRFLK-GQ 54 +R GR+ +++RP++ N GS L G+T+ L ++ ++ + LK + Sbjct: 311 IRADGRATDEIRPISCEVNVLPKVHGSALFTRGETQALVVTTLGMLGEDDQIIDGLKLDE 370 Query: 55 GQGWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITL 114 Y P S G R + L RAL V + + + + Sbjct: 371 PNKRFLLHYNFPPYSVGEIKPMRG----PGRREIGHGALAERALAPLVPGEEEFPYVVRV 426 Query: 115 DCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNG----E 170 D+L+++G + ASI G ++++ A PMK VA +++G++ Sbjct: 427 VSDILESNGSSSQASICGGSLSMMAA-----------GVPMKKHVAGIAMGLIKEGDDMV 475 Query: 171 AVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 + D++ +ED + D V T DG + +Q + T E L L A Sbjct: 476 ILTDIQGLEDHYGDMDFKVAGTRDG-VTALQMDNKAGGITREILSRALMQAHQAR 529 Score = 68.4 bits (166), Expect = 2e-10, Method: Composition-based stats. Identities = 45/208 (21%), Positives = 78/208 (37%), Gaps = 22/208 (10%) Query: 20 YTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTHTRNAREAA 79 K A +V+ G+T +L TA + + PR G + ++ + Sbjct: 21 VAKQANAAVVASHGETTILTTACMSD-KPRV--GLDFFPLLVDFEERYYAAGKIPGGYIK 77 Query: 80 K-GKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTASITGACVALV 138 + G+ + R++ R++R+ D + + + +I A +AL Sbjct: 78 REGRPSQTAILSARVVDRSIRSLFDDSMRNDVHVVATVLAVDQKNPANILAINAASMAL- 136 Query: 139 DALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAET--DMNVVMTEDGR 196 + P G V AV +G ++GE V + ED AE+ D+ V G Sbjct: 137 ----------TISDIPWSGPVGAVRMGCIDGELVVNPT--EDRMAESTLDLTVAG-HAGG 183 Query: 197 IIEVQGTAEGEPFTHEELLILLALARGE 224 I V+ A P E L+ L A+ E Sbjct: 184 ITMVEAGAREVP--EELLVNALQTAQDE 209 >UniRef50_D2L1T8 Polyribonucleotide nucleotidyltransferase n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L1T8_9DELT Length = 762 Score = 199 bits (506), Expect = 6e-50, Method: Composition-based stats. Identities = 52/233 (22%), Positives = 88/233 (37%), Gaps = 24/233 (10%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQ 56 +R GR VRP+ + GS L G+TK LC A++ +E L G+ Sbjct: 320 IRLDGRDTKSVRPIGIQVGVLPRTHGSTLFARGETKALCVATLGSTGDEQKIETLNGETY 379 Query: 57 GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 Y P R + L R++ + FT+ + Sbjct: 380 KRFMLHYNFPPYCVGEVKMLRG----PSRRDIGHGALAERSVLPVLPGPEEFPFTMRVVS 435 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGE----AV 172 V++++G + AS+ GA +AL+DA P+K VA +++G++ + Sbjct: 436 QVMESNGSSSMASVCGASLALMDA-----------GVPIKQPVAGIAMGLIKEGDDFLIL 484 Query: 173 CDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 D+ ED+ + D V T DG I +Q + + L A+ Sbjct: 485 TDILGDEDAMGDMDFKVAGTADG-ITGIQMDIKITGIPQAVMRQALNQAKEAR 536 Score = 71.1 bits (173), Expect = 3e-11, Method: Composition-based stats. Identities = 43/221 (19%), Positives = 75/221 (33%), Gaps = 26/221 (11%) Query: 14 VTLTRN-YTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTHT 72 + L A+G+V ++ G T VL TA + +G + +Y + + Sbjct: 19 IILETGRLANQADGAVWIQSGGTVVLVTA----CTQALAEEKGFFPLVVDYQEMSYAAGR 74 Query: 73 RNAREAAK--GKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADG--GTRTA 128 + G+ R + + RLI R R + + VL ADG Sbjct: 75 IPGSYFRREIGRPSEREVLVCRLIDRPCRPLFPKG--FRDEVQIIATVLSADGQVEPDVL 132 Query: 129 SITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMN 188 ++T A AL + P G +A VG ++G+ V + A +N Sbjct: 133 ALTAASTALH-----------ISKIPFHGPIAGGRVGYIDGQFVLNPTVP-MINAGAVLN 180 Query: 189 VVMTED-GRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 + ++ V+G + + L L PL Sbjct: 181 LTFAASRDAVVMVEGGG--RFVSEDLLADALEWGHKAVQPL 219 >UniRef50_Q2GEY8 Polyribonucleotide nucleotidyltransferase n=2 Tax=Neorickettsia RepID=PNP_NEOSM Length = 757 Score = 199 bits (506), Expect = 6e-50, Method: Composition-based stats. Identities = 53/233 (22%), Positives = 102/233 (43%), Gaps = 24/233 (10%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQ 56 +RP GRS ++RP+++ +Y GS L G T+ L A++ +E V + G+ + Sbjct: 317 IRPDGRSLTEIRPISIALDYLPGTHGSALFTRGGTQSLVVATLGSYQDEQVMDDIDGERR 376 Query: 57 GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 + Y LP + A G R + RL +A++A + K + +T+ L Sbjct: 377 ESVLLHYNFLPYAVGEV----GALRAPGRREIGHGRLALKAVKAVLPGKEVFPYTLRLVS 432 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNG----EAV 172 ++ ++DG + A++ G+ +AL+D P+ VA +++G++ + Sbjct: 433 EITESDGSSSMATVCGSSLALMD-----------TGVPITKHVAGIAMGLITDGVRSAVL 481 Query: 173 CDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 D+ ED + D V T +G I+ +Q + + + L A Sbjct: 482 SDISGDEDMLGDMDFKVAGTRNG-IVALQMDMKVRGISIATIRDALNQALAGR 533 Score = 65.4 bits (158), Expect = 1e-09, Method: Composition-based stats. Identities = 35/193 (18%), Positives = 70/193 (36%), Gaps = 24/193 (12%) Query: 14 VTLTRN-YTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTHT 72 + + + A G+ V +G T VL ++++ K + L +S Sbjct: 16 LHIKTGEVARQAAGAACVSYGGTVVLAVVTLQKDTAASKKTSDLSGLALVTNFLAKSYAL 75 Query: 73 RNAREA---AKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTA- 128 +GK R + R++ RA+R ++ + E + + C +L G + Sbjct: 76 GRIPNGFFKREGKLSEREVLASRVVDRAVRPLIEENLVNE--VNIVCKLLAH-GNRKVLP 132 Query: 129 ---SITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAET 185 ++ A AL +L P G V V V + E C + ++ Sbjct: 133 EIPALIAASAAL-----------QLSGIPFSGPVIGVDVDMRGSEVTC--NEIRETEGGL 179 Query: 186 DMNVVMTEDGRII 198 ++ V TE+ ++ Sbjct: 180 ELFVACTEESVVM 192 >UniRef50_Q2S1P1 Polyribonucleotide nucleotidyltransferase n=1 Tax=Salinibacter ruber DSM 13855 RepID=PNP_SALRD Length = 712 Score = 199 bits (505), Expect = 8e-50, Method: Composition-based stats. Identities = 51/235 (21%), Positives = 94/235 (40%), Gaps = 24/235 (10%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQG 57 R GR VR + + Y GS + G+T+VL + ++ + + Sbjct: 322 RIDGRDQTDVRDLWMEVGYLPRVHGSAIFTRGETQVLGSITLGTSDDVQPVDEVFADTDK 381 Query: 58 WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCD 117 Y P S + K R + L RALR + + +TI ++ D Sbjct: 382 SFYLHYRFPPFSVGEASYLRGPK----RREIGHSMLAERALRPVIPEQDEFPYTIRINAD 437 Query: 118 VLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGE----AVC 173 V++++G + AS+ +AL+DA P++ VA +++G+V + + Sbjct: 438 VMESNGSSSMASVCAGSLALMDA-----------GVPIEKPVAGIAMGLVQEDDETTVLT 486 Query: 174 DLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 D+ ED + D + T DG I Q + E + + +L L +R + + Sbjct: 487 DILGQEDHLGDMDFKLTGTRDG-ITACQMDMKIEGLSRDVMLKALKQSRDARHHI 540 Score = 78.1 bits (191), Expect = 2e-13, Method: Composition-based stats. Identities = 43/198 (21%), Positives = 70/198 (35%), Gaps = 35/198 (17%) Query: 12 RPVTLTRN-YTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRST 70 R ++L K A+GSV+ GDT VL TA++ + V E P + Sbjct: 16 RSLSLETGRIAKQADGSVVARLGDTMVLSTATLSDSVN-------------ESNFFPLTV 62 Query: 71 HTRNAREA----------AKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 R A +G+ + RLI RA+R + + Sbjct: 63 DYREKFAAGGKVPGGFIKREGRPTDKETLTSRLIDRAIRPLFPDGFYHDVHVVNFVISAG 122 Query: 121 ADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVED 180 D + G+ AL+ L P G A V VG V+G+ + + + Sbjct: 123 QDFDADVIAGVGSSAALM-----------LSGAPFAGPFAEVRVGRVDGDYIVNPTMQQT 171 Query: 181 SAAETDMNVVMTEDGRII 198 ++ D+ V ED ++ Sbjct: 172 EESDIDLVVAGKEDALVM 189 >UniRef50_C1TQM6 Polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TQM6_9BACT Length = 749 Score = 198 bits (503), Expect = 1e-49, Method: Composition-based stats. Identities = 48/234 (20%), Positives = 91/234 (38%), Gaps = 26/234 (11%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI------EEGVPRFLKGQG 55 R GR +++R ++ + GS + G+T+ L TA++ ++ + + Sbjct: 312 RADGRKTDELRSLSCEVDVLPKVHGSAVFTRGETQSLATATLGMLGEDDQLIDGLKHNEP 371 Query: 56 QGWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLD 115 Y P S G R + L RAL + + + + Sbjct: 372 NKSFLLHYNFPPYSVGEVRPMRG----PGRREIGHGALAERALTPIIPDDTEFPYVVRVV 427 Query: 116 CDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNG----EA 171 D+L+++G + ASI G +AL+ A P+K VA +++G++ Sbjct: 428 SDILESNGSSSQASICGGSLALMSA-----------GVPIKRHVAGIAMGLIKEGDDVVV 476 Query: 172 VCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 + D++ +ED + D V T +G + +Q + T E L L A+ Sbjct: 477 LTDIQGLEDHYGDMDFKVAGTREG-VTALQMDNKAGGITREILKQALGQAKDAR 529 Score = 75.0 bits (183), Expect = 2e-12, Method: Composition-based stats. Identities = 45/216 (20%), Positives = 79/216 (36%), Gaps = 23/216 (10%) Query: 13 PVTLTRN-YTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTH 71 + K A GSV GDT +L TA + + +G + ++ S Sbjct: 13 ELVFETGKVAKQANGSVWARQGDTVILTTACMTDKP---REGLDFFPLLVDFEERFYSAG 69 Query: 72 TRNAREAAK-GKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQAD--GGTRTA 128 + G+ + R+I R++R+ ++ + + VL D Sbjct: 70 KIPGGFIKREGRPSQTAILSARVIDRSIRS--LFESWMRHDVHVVSTVLSVDQHNPPNIL 127 Query: 129 SITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMN 188 +I A AL + P G V AV +G ++G V + + ++ Sbjct: 128 AINAASAAL-----------TISDIPWGGPVGAVRIGYIDGSLVVNPTEEMMENSSLELV 176 Query: 189 VVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGE 224 V DG I V+ A+ P + L+ + LA+GE Sbjct: 177 VSGHSDG-ITMVEAGAQEVP--EDLLVDAMELAQGE 209 >UniRef50_A9NGE2 Polyribonucleotide nucleotidyltransferase n=5 Tax=Acholeplasmataceae RepID=PNP_ACHLI Length = 715 Score = 198 bits (503), Expect = 2e-49, Method: Composition-based stats. Identities = 51/234 (21%), Positives = 94/234 (40%), Gaps = 25/234 (10%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI-EEGVPRFLKGQGQ--- 56 +RP GR +++RP+ + + GS L G T+ L ++ + + G Q Sbjct: 327 VRPDGRGLDEIRPLASSVDLLPRTHGSALFTRGQTQALGIVTLGSLNENQIIDGLEQETV 386 Query: 57 -GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLD 115 Y P S G G R + L RAL + + + I + Sbjct: 387 TKRFMLHYNFPPFSVGE----TGRYGAPGRREIGHGALGERALLQVLPSEDEFPYAIRVV 442 Query: 116 CDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV----NGEA 171 ++ +++G + A+I +AL+ A P+K VA +++G++ + Sbjct: 443 SEITESNGSSSQATICVGSMALMAA-----------GVPIKAPVAGIAMGLIMDGEHYSI 491 Query: 172 VCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 + D++ +ED + D V T+DG I +Q + + T E + L AR Sbjct: 492 LSDIQGMEDHEGDMDFKVAGTKDG-ITALQMDIKIQGITTEIMKEALEQARKGR 544 Score = 83.1 bits (204), Expect = 7e-15, Method: Composition-based stats. Identities = 45/220 (20%), Positives = 84/220 (38%), Gaps = 24/220 (10%) Query: 13 PVTLTRN-YTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTH 71 P+ + K A G+ ++ +GDT VL TA + V + + Y + Sbjct: 14 PLRVEVGEIAKQANGAAMIYYGDTVVLSTAVAKAKVGQTDFFP----LMVIYAEKQYAAG 69 Query: 72 TRNAREAAK-GKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQAD--GGTRTA 128 + G+ RLI R LR D + + VL +D ++ A Sbjct: 70 KIPGGFFRREGRPSEVETLTSRLIDRPLRPLFDDGY--RNEVQVVNTVLSSDPEASSQMA 127 Query: 129 SITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMN 188 ++ G+ +AL ++ P G +A VG ++G+ V + + + ++ D+ Sbjct: 128 AMLGSSIAL-----------EISNIPFMGPIAGAHVGRIDGQFVLNPSSEQLNVSDIDLI 176 Query: 189 VVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 V T+D I V+ A+ + E +L + L Sbjct: 177 VAGTKD-AINMVEAGAKQ--VSEEVMLEAILFGHEAIKEL 213 >UniRef50_Q9SP08 Exonuclease RRP41 n=15 Tax=Magnoliophyta RepID=Q9SP08_ARATH Length = 241 Score = 197 bits (502), Expect = 2e-49, Method: Composition-based stats. Identities = 63/231 (27%), Positives = 100/231 (43%), Gaps = 22/231 (9%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPR--FLKGQGQGW 58 +R GR N++R + A+GS + E G+TKV+ + K Sbjct: 9 LRLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAVYGPREIQNKSQQKKNDHAV 68 Query: 59 ITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDV 118 + EY M ST R + K R+ E+ +I + + A + + + I + V Sbjct: 69 VLCEYSMAQFSTGDRR-----RQKFDRRSTELSLVIRQTMEACILTELMPHSQIDIFLQV 123 Query: 119 LQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYV 178 LQADGGTR+A I A +AL DA PM+ + + S G +N + DL YV Sbjct: 124 LQADGGTRSACINAATLALADA-----------GIPMRDLAVSCSAGYLNSTPLLDLNYV 172 Query: 179 EDSAAETDMNV-VMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 EDSA D+ V ++ + ++ +Q A+ E + ALA + Sbjct: 173 EDSAGGADVTVGILPKLDKVSLLQMDAK---LPMETFETVFALASEGCKAI 220 >UniRef50_D1INE0 Whole genome shotgun sequence of line PN40024, scaffold_66.assembly12x (Fragment) n=4 Tax=Magnoliophyta RepID=D1INE0_VITVI Length = 905 Score = 197 bits (502), Expect = 2e-49, Method: Composition-based stats. Identities = 56/240 (23%), Positives = 93/240 (38%), Gaps = 31/240 (12%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQ 56 +R GR N+VRP+ GS L GDT+VLCT ++ + L G Sbjct: 317 LRVDGRHLNEVRPLYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPGDAQRLDSLVGPPT 376 Query: 57 GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 Y P S + R R + L +AL A + + +T+ ++ Sbjct: 377 KRFMLHYSFPPFSINEVGKRVG----LNRREVGHGTLAEKALLAVLPPEEEFPYTVRINS 432 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV--------- 167 +V+ +DG T A++ G +AL+DA P++ VA +SVG+V Sbjct: 433 EVMASDGSTSMATVCGGSMALMDA-----------GIPLREHVAGISVGLVTEVDPSTNT 481 Query: 168 --NGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 + + D+ +ED + D + T G I +Q + + + L A Sbjct: 482 IKDYRILTDILGLEDHLGDMDFKIAGTRKG-ITAIQLDIKPAGIPLDIICECLEPALRGR 540 Score = 83.5 bits (205), Expect = 6e-15, Method: Composition-based stats. Identities = 43/220 (19%), Positives = 81/220 (36%), Gaps = 28/220 (12%) Query: 12 RPVTLTRN-YTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRS- 69 R +T + A G+V++ +TKVL T + +G + +T +Y + Sbjct: 16 RSITFETGKIARFANGAVVMSMDETKVLSTVASSKGDA----ARDFLPLTVDYQEKHFAQ 71 Query: 70 --THTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADG--GT 125 T R +G R + RLI R +R E + + VL +DG Sbjct: 72 GVIPTTFMRR--EGAPRERELLCGRLIDRPIRPLFPAGFYHE--VQVMASVLSSDGKQDP 127 Query: 126 RTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAET 185 + AL+ L P G + + +G + G+ + + E S ++ Sbjct: 128 DVMAANATSAALM-----------LSDIPWGGPIGVIRIGRICGQFIVNPSMDELSLSDL 176 Query: 186 DMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 ++ T D ++ + + ++L L LA E+ Sbjct: 177 NLVYACTRDKTLMI---DVQAREISEKDLEAALRLAHPEA 213 >UniRef50_D0WEI7 Polyribonucleotide nucleotidyltransferase n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WEI7_9ACTN Length = 769 Score = 197 bits (501), Expect = 3e-49, Method: Composition-based stats. Identities = 54/232 (23%), Positives = 98/232 (42%), Gaps = 24/232 (10%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQG 57 R GR+ ++RP+ + Y GS L + G T+V+ A++ E + Q Sbjct: 345 RADGRAPEEIRPLYIRPGYLPRVHGSGLFQRGQTQVMSVATLGLLNEAQRLDTIDPQTTR 404 Query: 58 WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCD 117 +Y P T G R + L RA+ + + ++I + + Sbjct: 405 RYMHQYNFPPYCTGEVGRM----GAPKRREVGHGALAERAILPVLPNEDEFPYSIRVVSE 460 Query: 118 VLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGE----AVC 173 VL+++G + AS G+C+AL+DA P+K V+ V++G++ + + Sbjct: 461 VLESNGSSSMASTCGSCLALMDA-----------GVPIKAPVSGVAMGLIKEDDGVVILS 509 Query: 174 DLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 D++ +ED + D V T +G I +Q + + E L LA A+ Sbjct: 510 DIQGLEDFLGDMDFKVTGTPEG-ITALQMDNKARGLSTEILGRALAQAKEGR 560 Score = 56.5 bits (135), Expect = 6e-07, Method: Composition-based stats. Identities = 34/208 (16%), Positives = 70/208 (33%), Gaps = 21/208 (10%) Query: 20 YTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTHTRNAREAA 79 K A G+VLV G+T VL T+ I + + +T ++ + Sbjct: 52 LAKQATGAVLVRQGETTVLVTSVISKEEKDYDFFP----LTVDFMEKMYAVGRIPGGYLK 107 Query: 80 K-GKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTASITGACVALV 138 + G+ + R++ R +R + + + DG + Sbjct: 108 REGRASDKGTLTARMVDRPIRPG--FAEGFKQEVHVVATTFAIDGENAPDCMCVG----- 160 Query: 139 DALQKLVENGKLKTNPMKGMVAAVSVGIVNG--EAVCDLEYVEDSAAETDMNVVMTEDGR 196 + + P G VA V + E + + Y E ++ ++ + T+D Sbjct: 161 ----GASAALLIASAPFDGPVACVRIARNAETREFIVNPTYAEQETSDLELTIAGTKD-Y 215 Query: 197 IIEVQGTAEGEPFTHEELLILLALARGE 224 I V+ A+ E++L + + Sbjct: 216 ISMVEAGADQVG--EEDMLAAMNFGQEA 241 >UniRef50_A9A5C9 Probable exosome complex exonuclease 1 n=3 Tax=Archaea RepID=ECX1_NITMS Length = 244 Score = 196 bits (498), Expect = 5e-49, Method: Composition-based stats. Identities = 68/226 (30%), Positives = 100/226 (44%), Gaps = 21/226 (9%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGV-PRFLKGQGQGWIT 60 R GR+ ++ R + + K+A+GS +EFGD K+L V P+ + G + Sbjct: 17 RCDGRTVDEPRRIMIKAGGLKNADGSSYIEFGDNKILVGVFGPRDVHPKHMSDTDTGILR 76 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 Y M P S R R +EI ++I AL AV L+ + + +VLQ Sbjct: 77 VRYHMEPFSVGERKNPA-----PSRREIEISKVIKEALEPAVMLEKFPRTAVDVFIEVLQ 131 Query: 121 ADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVED 180 ADGGTR A++T A VAL DA PM+ MVAA++ G V + D+ ED Sbjct: 132 ADGGTRCAALTAASVALADA-----------GIPMRDMVAAIAAGKVADTVILDVNNEED 180 Query: 181 SAAETDMNVV-MTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 A + DM + M +I +Q P EE + + Sbjct: 181 QAGQADMPIGYMPNLEKITLLQLDGVLTP---EEYKKCIQVGVDGC 223 >UniRef50_A9B8G1 Polyribonucleotide nucleotidyltransferase n=38 Tax=Bacteria RepID=PNP_HERA2 Length = 777 Score = 196 bits (498), Expect = 5e-49, Method: Composition-based stats. Identities = 57/235 (24%), Positives = 97/235 (41%), Gaps = 26/235 (11%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQ 56 +R GR N++RP+ + GS L G T+VL A++ +E L + Sbjct: 320 IRVDGRKVNEIRPIAVDVGVLPRVHGSGLFTRGQTQVLTVATLGSPGDEQRLDDLGIETT 379 Query: 57 GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 Y ST + R + +L RAL + K +T+ L Sbjct: 380 RHYMHHYNFPAFSTGEARPSRGPR----RRDIGHGKLAERALVPVLPEKDKFPYTMRLVS 435 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGE------ 170 +VL ++G + AS+ G+ +AL+DA P+K VA V++G++ G+ Sbjct: 436 EVLASNGSSSMASVCGSSLALMDA-----------GVPIKAPVAGVAMGLITGKEAGQFS 484 Query: 171 AVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 + D++ +ED+ + D V T G I +Q + T+E + AR Sbjct: 485 VLTDIQGLEDALGDMDFKVAGTTAG-ITALQMDIKTTGITYEIMQQAFEQARQGR 538 Score = 80.8 bits (198), Expect = 3e-14, Method: Composition-based stats. Identities = 41/210 (19%), Positives = 73/210 (34%), Gaps = 19/210 (9%) Query: 12 RPVTLTRN-YTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRST 70 RP+T+ + A G+VLV +GDT +L + G +T +Y + Sbjct: 16 RPLTIEAGRVAQLANGAVLVRYGDTVLLAAVTASAEP---RDGIDFFPLTVDYEEKMYAA 72 Query: 71 HTRNAREAAK-GKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTAS 129 + G+ + RL R LR + +++ + Sbjct: 73 GKIPGSFFKREGRPTETAILTSRLTDRPLRPLFPKGYYNDVQVSITTLSTDQVNDPGPLA 132 Query: 130 ITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNV 189 I GA ALV + P V AV +G ++G + + D+ V Sbjct: 133 IIGASAALV-----------ISDIPFAAPVGAVQMGHIDGVFAVNPVMGLMENSRLDLVV 181 Query: 190 VMTEDGRIIEVQGTAEGEPFTHEELLILLA 219 T + ++ V+ +A T E+L + Sbjct: 182 AGTSE-AVMMVEASAYE--LTEAEMLEAVK 208 >UniRef50_UPI000038E13A exosome complex exonuclease Rrp41 n=1 Tax=Ferroplasma acidarmanus fer1 RepID=UPI000038E13A Length = 240 Score = 196 bits (498), Expect = 6e-49, Method: Composition-based stats. Identities = 63/225 (28%), Positives = 110/225 (48%), Gaps = 19/225 (8%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +R GRS N++RP+ + + A+GS +E+G K++ + E P+ + + + Sbjct: 13 LRLDGRSLNEMRPIKIQTGVVERADGSAFIEWGANKIIVAVYVREAYPKHAQNIDRAIVK 72 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 A Y M S R + RTMEI ++++ AL +A+ L+ L I + VL+ Sbjct: 73 ARYNMSGYSVEERK-----RPGPDRRTMEISKVVSEALSSAIVLEKLPRAEIDVFIQVLE 127 Query: 121 ADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVED 180 AD GTR AS+T + VA+ DA PM+ +V + G +G+ V DL ED Sbjct: 128 ADAGTRIASLTASSVAVADA-----------GVPMRDLVVGCTAGKADGKIVLDLSKDED 176 Query: 181 SAAETDMNVV-MTEDGRIIEVQ--GTAEGEPFTHEELLILLALAR 222 + + D+ + + G+++ +Q G E F +++ A+ R Sbjct: 177 NFGQADIPMAILPRTGKVVLLQLDGDVTEEEFNEATSMMMDAMPR 221 >UniRef50_D1PLM8 Polyribonucleotide nucleotidyltransferase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLM8_9FIRM Length = 759 Score = 195 bits (497), Expect = 8e-49, Method: Composition-based stats. Identities = 58/237 (24%), Positives = 94/237 (39%), Gaps = 29/237 (12%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQG 57 R GR N++RP+ GS + G T+VL ++ + + L Sbjct: 363 RVDGRGINEIRPLAAEVGLLPRVHGSGMFTRGQTQVLTVCTLGSTKDAQLMDDLSDTQYK 422 Query: 58 WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCD 117 Y P S A + G R + L RAL + ++ +TI + Sbjct: 423 RYIHHYNFPPYSVGEARAPRS----PGRREIGHGNLAERALVPVLPDQSEFPYTIRCVSE 478 Query: 118 VLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV-NGEAV---- 172 VL ++G T ASI G+ +AL+DA P+K VA +S G++ +G+ + Sbjct: 479 VLSSNGSTSQASICGSTLALMDA-----------GVPIKAPVAGISCGLITDGDPLHGGR 527 Query: 173 ----CDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 D++ VED + D V T G I +Q + + T+E + L R Sbjct: 528 WMTMLDIQGVEDFHGDMDFKVGGTRRG-ITAIQMDIKVDGLTYEIVEEALEKCRKGR 583 Score = 96.6 bits (239), Expect = 7e-19, Method: Composition-based stats. Identities = 40/215 (18%), Positives = 81/215 (37%), Gaps = 19/215 (8%) Query: 12 RPVTLTRN-YTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRST 70 RP + A GS +V +GDT VLC ++ E +G ++ E+ + Sbjct: 66 RPFVVETGKMCGLANGSAMVRYGDTCVLCNVTMSEKP---REGVDFFPLSVEFEEKLYAA 122 Query: 71 HTRNAREAAK-GKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTAS 129 + G+ G + R++ R +R + +T+ L D Sbjct: 123 GRIPGSFMRREGRPGEHAILSSRVVDRPIRPLFPKDMRNDVCVTMTVMSLDPDNSAEITG 182 Query: 130 ITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNV 189 + GA +A+ + P G +A V VG+V+GE V + + ++ + + Sbjct: 183 MNGASLAIA-----------MSDIPWNGPIAGVFVGLVDGEIVLNPTKEQREHSDLSLTL 231 Query: 190 VMTEDGRIIEVQGTAEGEPFTHEELLILLALARGE 224 +E+ +I+ ++ A ++ + E Sbjct: 232 AASEE-KIVMIEAGANE--VDEATMMEAIKAGHAE 263 >UniRef50_B5E2A0 Polyribonucleotide nucleotidyltransferase n=202 Tax=Bacteria RepID=PNP_STRP4 Length = 737 Score = 195 bits (496), Expect = 1e-48, Method: Composition-based stats. Identities = 55/236 (23%), Positives = 94/236 (39%), Gaps = 24/236 (10%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQ 56 +RP GR +++RP+ ++ GS L G T+ L ++ E + L + + Sbjct: 317 VRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 376 Query: 57 GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 Y S G G R + L RAL + + I L Sbjct: 377 KRFMHHYNFPQYSVGE----TGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAIRLVA 432 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV----NGEAV 172 +VL+++G + ASI +AL+ P+K VA +++G++ N + Sbjct: 433 EVLESNGSSSQASICAGTLALM-----------AGGVPIKAPVAGIAMGLISDGNNYTVL 481 Query: 173 CDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 D++ +ED + D V T DG I +Q + + T E L LA A+ + Sbjct: 482 TDIQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEI 536 Score = 78.8 bits (193), Expect = 1e-13, Method: Composition-based stats. Identities = 41/211 (19%), Positives = 76/211 (36%), Gaps = 24/211 (11%) Query: 12 RPVTLTRN-YTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRST 70 R + + K A GSV+V +G++ VL A + + + + Y + Sbjct: 13 RELIVETGQVAKQANGSVVVRYGESTVLTAAVMS----KKMATGDFFPLQVNYEEKMYAA 68 Query: 71 HTRNAREAAK-GKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQAD--GGTRT 127 + G+ RLI R +R + + VL D Sbjct: 69 GKFPGGFMKREGRPSTDATLTARLIDRPIRP--MFAEGFRNEVQVINTVLSYDENASAPM 126 Query: 128 ASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDM 187 A++ G+ +AL + P G +A V VG V+G+ + + + + ++ Sbjct: 127 AAMFGSSLAL-----------SISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLEL 175 Query: 188 NVVMTEDGRIIEVQGTAEGEPFTHEELLILL 218 V T+ I V+ A+ + E +L L Sbjct: 176 TVAGTKH-AINMVESGAKE--LSEEIMLEAL 203 >UniRef50_B0BXR0 Polyribonucleotide nucleotidyltransferase n=20 Tax=Alphaproteobacteria RepID=PNP_RICRO Length = 748 Score = 195 bits (496), Expect = 1e-48, Method: Composition-based stats. Identities = 50/232 (21%), Positives = 95/232 (40%), Gaps = 24/232 (10%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTAS----IEEGVPRFLKGQGQG 57 R GRS +R + A GS L G+T+ L + + ++E + L+G+ + Sbjct: 316 RIDGRSTTDIRQIACEIGLLPSAHGSALFTRGETQSLVSTTFGTSLDEQIVDSLEGEYKE 375 Query: 58 WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCD 117 Y P S + +A R + +L RA+ + K ++I + + Sbjct: 376 RFMLNYIFPPYSVNEAMPMKA----PSRREVGHGKLAWRAINPILPNKVQFPYSIRVVAE 431 Query: 118 VLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV----NGEAVC 173 +++G + A++ G+ +AL+ A P+K VA +++G+V N + Sbjct: 432 TTESNGSSSMATVCGSSLALMYA-----------GVPIKAPVAGIAMGLVKEGKNFAVLS 480 Query: 174 DLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 D+ ED + D V T +G I +Q + + + + L AR Sbjct: 481 DILGDEDYFGDMDFKVAGTGEG-ITALQMDIKISGVDFKIMKVALEQARLGR 531 Score = 96.2 bits (238), Expect = 8e-19, Method: Composition-based stats. Identities = 52/210 (24%), Positives = 89/210 (42%), Gaps = 23/210 (10%) Query: 14 VTLTRN-YTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTHT 72 + L+ + A+G+V V+ G++ +LCTA + + +G G +T Y + + Sbjct: 16 LELSTGKIARQADGAVTVKMGNSVLLCTAVVAN---KAKEGIGFLPLTINYREMAYAAGK 72 Query: 73 RNAREAA-KGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGT--RTAS 129 +GK R + + RLI R +R + E + C VL D T + Sbjct: 73 IPGGFFKHEGKPSDREVLVSRLIDRPIRPLFHPAFVNETH--VTCSVLSYDPETPVDILA 130 Query: 130 ITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNV 189 I GA AL L P +VAA VG++NGE V + ++ D+ V Sbjct: 131 IIGASAAL-----------SLSPAPYLEIVAASKVGLINGEFVLNPTLALLKTSQLDLVV 179 Query: 190 VMTEDGRIIEVQGTAEGEPFTHEELLILLA 219 T D ++ V+ +E + E++L + Sbjct: 180 AGTSD-SVMMVE--SEAHLLSEEQMLEAVK 206 >UniRef50_Q6MDI2 Polyribonucleotide nucleotidyltransferase n=17 Tax=Chlamydiales RepID=PNP_PARUW Length = 697 Score = 195 bits (495), Expect = 1e-48, Method: Composition-based stats. Identities = 57/233 (24%), Positives = 102/233 (43%), Gaps = 24/233 (10%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVL--CTASIEEGVPRFLKGQGQG- 57 +R GR++ +R + + ++ A GS L G+T+ L CT RF +G+G Sbjct: 315 VRSDGRTSTDIRFIDIEQSLLPRAHGSSLFTRGETQALAVCTLGGASMAQRFEDLEGEGN 374 Query: 58 -WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 +Y P S G G R + +L RAL A + K +TI L+ Sbjct: 375 NRFYLQYSFPPYSVGEV----GRVGAPGRREIGHGKLAERALMAVIPTKEQFPYTIRLES 430 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV----NGEAV 172 ++ +++G + A++ G C+AL+DA +K VA +++G++ + Sbjct: 431 NITESNGSSSMATVCGGCLALMDA-----------GVAIKRPVAGIAMGLILENERFIIL 479 Query: 173 CDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 D+ +ED+ + D V ++G I Q + E T E + + L A+ Sbjct: 480 SDILGIEDALGDMDFKVTGDQNG-ITAFQMDIKVEGITIEIMRVALKQAKEGR 531 Score = 79.2 bits (194), Expect = 9e-14, Method: Composition-based stats. Identities = 40/213 (18%), Positives = 81/213 (38%), Gaps = 23/213 (10%) Query: 13 PVTLTRN-YTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEY-GMLPRST 70 + + A G+V+V G+T V TA P + +Y + Sbjct: 14 EIIFETGKIARQAGGAVVVRCGETVVFTTAC---AAPNADSTTDFLPLRVDYQEKFSSAG 70 Query: 71 HTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADG--GTRTA 128 T +G+ + + + RLI R +R + E + L V DG Sbjct: 71 KTLGGFIKREGRPTEKEVLVSRLIDRPIRPMFEEGYYNE--VQLLSFVWSYDGINSPEPL 128 Query: 129 SITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMN 188 +I GA ALV + P+ V AV +G ++ + + + + ++ D+ Sbjct: 129 AICGASAALV-----------ISDIPLIKPVGAVRIGFIDAQFIVNPTIEQQKQSKLDLL 177 Query: 189 VVMTEDGRIIEVQGTAEGEPFTHEELLILLALA 221 + TE+ ++ ++G + T +++L + + Sbjct: 178 IAGTEE-AVLMIEGFCDF--LTEDQVLEAIEIG 207 >UniRef50_A0LYC0 Polyribonucleotide nucleotidyltransferase n=86 Tax=cellular organisms RepID=PNP_GRAFK Length = 750 Score = 195 bits (495), Expect = 1e-48, Method: Composition-based stats. Identities = 49/235 (20%), Positives = 93/235 (39%), Gaps = 28/235 (11%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQ 56 +R GR ++VR + +Y GS + G+T+ L T ++ + +G+ Sbjct: 317 IRLDGRKTDEVRDIWCEVDYLPSVHGSSIFTRGETQALATVTLGTSRDANQIDMPSHEGE 376 Query: 57 GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 Y P T R + L RAL+ + + +T+ + Sbjct: 377 ERFYLHYNFPPFCTGEARPIRGT----SRREVGHGNLAQRALKGMIPEE--CPYTVRVVS 430 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNG------E 170 +VL+++G + A++ +AL+DA MK V+ +++G+++ Sbjct: 431 EVLESNGSSSMATVCAGTMALMDA-----------GVQMKKPVSGIAMGLISDGDSGKYA 479 Query: 171 AVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 + D+ ED + D V T DG I Q + + ++E L+ L AR Sbjct: 480 VLSDILGDEDHLGDMDFKVTGTADG-ITACQMDIKVKGLSYEILVNALKQARDGR 533 Score = 63.0 bits (152), Expect = 6e-09, Method: Composition-based stats. Identities = 41/217 (18%), Positives = 78/217 (35%), Gaps = 24/217 (11%) Query: 12 RPVTLTRN-YTKHAEGSVLVEFGDTKVLCTA---SIEEGVPRFLKGQGQGWITAEYGMLP 67 R +++ K A GSV+V+ G +LCT ++ +P A G P Sbjct: 16 REISIETGKLAKQAHGSVVVQSGKCMLLCTVVSNYEQKDLPFLPLTVDYREKFAAAGRYP 75 Query: 68 RSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRT 127 R AR + RL+ R LR E + + ++ D Sbjct: 76 GGFFKREAR------PSDGEVLTMRLVDRVLRPLFPKDYSAETQVMI--QLMSHDDEVMP 127 Query: 128 ASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDM 187 A +L P + ++ VG VNGE + + + + ++ +M Sbjct: 128 ---------EAMAGLAASAAIQLSDFPFECAISEARVGRVNGEFIINPTRAQLAESDIEM 178 Query: 188 NVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGE 224 + + D ++ V+G E + + E+++ + A Sbjct: 179 MIGASAD-SVMMVEG--EMDEISEEDMVEAIKFAHEA 212 >UniRef50_C7N5E6 Polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) n=2 Tax=Coriobacteriaceae RepID=C7N5E6_SLAHD Length = 743 Score = 194 bits (493), Expect = 2e-48, Method: Composition-based stats. Identities = 52/232 (22%), Positives = 95/232 (40%), Gaps = 24/232 (10%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVL--CTASIEEGVPRF--LKGQGQG 57 R GR+ +++RP+ + Y GS L + G T+ L CT + R + Sbjct: 315 RADGRAADEIRPLYIRPGYLPRVHGSGLFQRGQTQALSVCTLGLLNEAQRLDTIDPATGK 374 Query: 58 WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCD 117 +Y P T G R + L RA+ + + + I + + Sbjct: 375 RYMHQYNFPPYCTGEVGRM----GAPKRREVGHGALAERAILPVLPSEDEFPYAIRVVSE 430 Query: 118 VLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGE----AVC 173 +L+++G + AS G+C+AL+DA P+K V+ +++G++ E + Sbjct: 431 ILESNGSSSMASTCGSCLALMDA-----------GVPIKAPVSGIAMGLIKEEDGVVILS 479 Query: 174 DLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 D++ +ED + D V T +G I +Q + + E L L A+ Sbjct: 480 DIQGLEDFLGDMDFKVTGTANG-ITALQMDNKARGLSTEILGRALQQAKEGR 530 Score = 66.9 bits (162), Expect = 5e-10, Method: Composition-based stats. Identities = 42/210 (20%), Positives = 73/210 (34%), Gaps = 25/210 (11%) Query: 20 YTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTHTRNAREAA 79 K A G+VLV+ G+T VL TA I + +T ++ + Sbjct: 22 LAKQATGAVLVKQGETTVLVTAVISAQEKDYDFFP----LTVDFMEKMYAVGRIPGGYLK 77 Query: 80 K-GKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTASIT--GACVA 136 + GK + R+I R +R + + + DG I GA A Sbjct: 78 REGKASDKGTLTARMIDRPIRPG--FADGFKQEVHVVATTFAIDGQNPPDCICVGGASAA 135 Query: 137 LVDALQKLVENGKLKTNPMKGMVAAVSVGI--VNGEAVCDLEYVEDSAAETDMNVVMTED 194 L+ + + P G A V + E + + Y E ++ ++ + T D Sbjct: 136 LM-----------IGSAPFDGPAACVRIARNAETKEFIVNPTYEEQETSDLELTIAGTRD 184 Query: 195 GRIIEVQGTAEGEPFTHEELLILLALARGE 224 I V+ A T E++L + + Sbjct: 185 -YISMVEAGANE--VTEEDMLAAMNFGQEA 211 >UniRef50_A5VCY9 Polyribonucleotide nucleotidyltransferase n=438 Tax=cellular organisms RepID=PNP_SPHWW Length = 774 Score = 194 bits (493), Expect = 2e-48, Method: Composition-based stats. Identities = 55/232 (23%), Positives = 93/232 (40%), Gaps = 24/232 (10%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQG 57 R GR VRP+ ++ A GS L G+T+ + T ++ E + L G Sbjct: 314 RIDGRDTRTVRPIVAEAHFLPRAHGSALFTRGETQSISTCTLGTKESEQMIDGLNGLRYE 373 Query: 58 WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCD 117 Y P S G G R + +L RAL A + K +TI L D Sbjct: 374 HFMLHYNFPPYSVGEV----GRFGAPGRREVGHGKLAWRALHAVLPTKEEFPYTIRLTSD 429 Query: 118 VLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV----NGEAVC 173 + +++G + A++ G +A++DA P+K V+ +++G++ + + Sbjct: 430 ITESNGSSSMATVCGGSLAMMDA-----------GVPIKRPVSGIAMGLILEGKDFAVIS 478 Query: 174 DLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 D+ ED + D V T +G I +Q + T E L A+ Sbjct: 479 DILGDEDHLGDMDFKVAGTSEG-ITTMQMDIKIAGITEEIFKTALLQAKEGR 529 Score = 94.6 bits (234), Expect = 2e-18, Method: Composition-based stats. Identities = 53/220 (24%), Positives = 87/220 (39%), Gaps = 25/220 (11%) Query: 14 VTLTRN-YTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTHT 72 +TL + A+G+VL G+T VLC + V +GQ +T Y S+ Sbjct: 16 LTLETGRVARQADGAVLATLGETVVLCAVTAARSVK---EGQDFFPLTVHYQEKYFSSG- 71 Query: 73 RNAREAAKGKQGGRTME--IQRLIARALRAAVDLKALGEFTITLDCDVLQADG--GTRTA 128 R K ++G E + RLI R +R E I + VL DG Sbjct: 72 RIPGGFFKRERGATEKETLVSRLIDRPIRPLFPEGFYNE--INVIAQVLSYDGENEPDIL 129 Query: 129 SITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMN 188 ++ A AL + P G + A VG +GE + + + +A + D+ Sbjct: 130 AMIAASAAL-----------TISGVPFMGPIGAARVGYKDGEYLLNPTDADVAAGDLDLV 178 Query: 189 VVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 V T D ++ V+ +E + + E +L + A S + Sbjct: 179 VAATHD-AVMMVE--SEAKELSEEVMLGAVMFAHKASQDV 215 >UniRef50_A8XLU8 Putative uncharacterized protein n=2 Tax=Caenorhabditis briggsae RepID=A8XLU8_CAEBR Length = 802 Score = 194 bits (492), Expect = 3e-48, Method: Composition-based stats. Identities = 53/242 (21%), Positives = 97/242 (40%), Gaps = 32/242 (13%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIE--------EGVPRFLK 52 +R GR RP+ + + K G + + G T+V+ T + + + V + L Sbjct: 335 IRCDGRRPTDFRPIRIQVDMYKKLHGCSMFQRGQTQVMSTVTFDSPTAAFHPDSVAQLLG 394 Query: 53 GQGQGWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTI 112 Q + Y +T+ +A R + L +AL+ + + Sbjct: 395 SQRKKSFMLHYEFPSFATND--IGVSASRSLNRREIGHGALAEKALKPLFPTG--FPYAV 450 Query: 113 TLDCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGE-- 170 L C VL+++G + AS+ G +AL DA PMK A V++G+++ E Sbjct: 451 RLACQVLESNGSSSMASVCGGSLALYDA-----------GVPMKNAAAGVAIGLISDEKE 499 Query: 171 ------AVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGE 224 + D+ +ED A + D + T++G Q + + T ++L L AR Sbjct: 500 PETNYKVLTDILGIEDYAGDMDFKIAGTKNG-FTAAQLDVKNDGLTRQQLRESLDAARAG 558 Query: 225 SN 226 + Sbjct: 559 ID 560 Score = 70.0 bits (170), Expect = 6e-11, Method: Composition-based stats. Identities = 41/214 (19%), Positives = 74/214 (34%), Gaps = 25/214 (11%) Query: 14 VTLTRNYTKH-AEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGW-ITAEYGMLPRSTH 71 + L + A +V+ GD V+ T + +G G G + EY S Sbjct: 38 LELKTGHMARFASAAVVASSGDNSVMATVVQRKQK----QGDGNGVPLQVEYR-PSASAV 92 Query: 72 TRNAREAAKGK--QGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTAS 129 R + + Q + I R I R++R + + E + L + Sbjct: 93 GRIPTNFLRRELSQSDNEILISRAIDRSIRPLMPANSY-ETQVICKPLALDENADQIMLG 151 Query: 130 ITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAV--CDLEYVEDSAAETDM 187 I A AL + + P G +AA+ V + + + E A+ +M Sbjct: 152 INAASSALH-----------ISSAPFNGPLAAIRVSMDPRGKIFHVNPGQEELKASSMNM 200 Query: 188 NVVMTEDGRIIEVQGTAEGEPFTHEELLILLALA 221 V M + + + ++ E E+L L +A Sbjct: 201 IVAMRRNQKTVMIELDGEET--RGEQLEEALDVA 232 >UniRef50_Q8GZQ3 Polynucleotide phosphorylase n=19 Tax=cellular organisms RepID=Q8GZQ3_ARATH Length = 922 Score = 193 bits (491), Expect = 3e-48, Method: Composition-based stats. Identities = 54/239 (22%), Positives = 93/239 (38%), Gaps = 31/239 (12%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVP----RFLKGQGQ- 56 R GR+ +++RP+ A GS L G+T+ L ++ + L+G + Sbjct: 447 RSDGRTLDEIRPINSRCGLLPRAHGSTLFTRGETQALAVVTLGDKQMAQRIDNLEGSDEY 506 Query: 57 GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 +Y P S G R + L RAL + +TI ++ Sbjct: 507 KRFYLQYTFPPSSVGEV----GRIGAPSRREIGHGTLAERALETILPSDDDFPYTIRVES 562 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGE------ 170 V++++G + AS+ G C+AL DA P+K VA +++G+V Sbjct: 563 TVIESNGSSSMASVCGGCLALQDA-----------GVPVKCSVAGIAMGMVWDTEEFGGD 611 Query: 171 ----AVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 + D+ ED++ + D V EDG + Q + T E + L A+ Sbjct: 612 GSPLILSDITGAEDASGDMDFKVAGNEDG-VTAFQMDIKVGGITLEIMEKALIQAKAGR 669 Score = 73.8 bits (180), Expect = 4e-12, Method: Composition-based stats. Identities = 48/221 (21%), Positives = 80/221 (36%), Gaps = 31/221 (14%) Query: 12 RPVTLTRNYTKHAEGSVL-VEFGDTKV---LCTASIEEGVPRFLKGQGQGWITAEYGMLP 67 R + + S + V G+T V +C A + FL + Y Sbjct: 97 REILVETGLMGRQASSAVTVTDGETIVYTSVCLADVPSEPSDFLP------LYVHYQ-ER 149 Query: 68 RSTHTRNAREA--AKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADG-- 123 S R + +G+ + I RLI R LR + E I VL DG Sbjct: 150 FSAVGRTSGGFFKREGRTKDHEVLICRLIDRPLRPTMPKGFYNETQIL--SWVLSYDGLH 207 Query: 124 GTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAA 183 ++T A +A+ L P +A V VG++ GE + + E + Sbjct: 208 APDALAVTSAGIAVA-----------LSEVPNAKAIAGVRVGLIGGEFIVNPTVKEMEES 256 Query: 184 ETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGE 224 + D+ + T D I+ ++G + P E LL + + + Sbjct: 257 QLDLFLAGT-DTAILTIEGYSNFLP--EEMLLQAVKVGQDA 294 >UniRef50_C9KKD1 Polyribonucleotide nucleotidyltransferase n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KKD1_9FIRM Length = 689 Score = 193 bits (491), Expect = 4e-48, Method: Composition-based stats. Identities = 54/233 (23%), Positives = 95/233 (40%), Gaps = 24/233 (10%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQ 56 +RP GR +VRPV+ GS L G T++L ++ +E V L + Sbjct: 310 IRPDGREVEEVRPVSCEVGLLPRTHGSGLFTRGQTQILTVTTLGSLGDEQVIDGLGPETT 369 Query: 57 GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 Y S + G R + L RAL + +TI L Sbjct: 370 KHYIHHYNFPGYSVGEARPMRS----PGRREIGHGALAERALVPVIPSIEEFPYTIRLVS 425 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVN----GEAV 172 +VL+++G + S+ G+ ++L++A P+K V+ V++G+V + Sbjct: 426 EVLESNGSSSMGSVCGSTLSLMNA-----------GVPIKRPVSGVAMGLVKEGDQYTIL 474 Query: 173 CDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 D++ +ED+ + D V T +G I +Q + + + E L L A+ Sbjct: 475 TDIQGMEDALGDMDFKVAGTTEG-ITAIQMDIKVDGLSREILSAALQQAKRGR 526 Score = 96.2 bits (238), Expect = 8e-19, Method: Composition-based stats. Identities = 52/223 (23%), Positives = 84/223 (37%), Gaps = 26/223 (11%) Query: 12 RPVTLTRN-YTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRST 70 RP+ + K A G+VLV +GDT VL TA+ +G +T +Y + Sbjct: 11 RPLVIENGQLAKQANGAVLVRYGDTVVLVTATASAEP---REGVDFFPLTVDYEEKMYAA 67 Query: 71 HTRNAREAAK-GKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTAS 129 + G+ + RLI R +R + I ++ D A+ Sbjct: 68 GKIPGGFIKREGRPSSDAILCARLIDRPIRPLFPKGFRNDVQIVATVLSVEQDNAPELAA 127 Query: 130 ITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNV 189 + GA AL + P G +A V VG VN E V + + + ++ V Sbjct: 128 MIGASCAL-----------TVSDIPFMGPIAGVRVGRVNDEFVINPTEEQRKVSTLNLTV 176 Query: 190 VMTEDGRIIEVQGTAEGEP---------FTHEELLILLALARG 223 + D ++ V+ A P F HEE+ L+ +G Sbjct: 177 AGSHD-AVMMVEAGANELPEDVILDAILFGHEEIKRLVEFQQG 218 >UniRef50_B2S4C3 Polyribonucleotide nucleotidyltransferase n=2 Tax=Treponema pallidum RepID=PNP_TREPS Length = 702 Score = 192 bits (488), Expect = 9e-48, Method: Composition-based stats. Identities = 46/233 (19%), Positives = 90/233 (38%), Gaps = 25/233 (10%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQ 56 +R GR+ + +RP+ GS + G+T+ L ++ + V ++G + Sbjct: 313 LRIDGRAIDAIRPIACEVGVLPRPHGSAVFTRGETQSLAVVTLGAMSDGQVYDDIEGDRR 372 Query: 57 GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 Y P S + G R + L R+L A + +T+ + Sbjct: 373 ENFILHYNFPPFSVGE-----IGRMGVGRREIGHGCLAHRSLSAVIPDPEQFPYTVRVVS 427 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNG----EAV 172 ++L+++G + A++ ++L+ A P+K VA +++G++ + Sbjct: 428 EILESNGSSSMATVCSGTLSLLHA-----------GVPIKKPVAGIAMGLITDGVRYAIL 476 Query: 173 CDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 D+ ED + D V T DG I Q + E + + L AR Sbjct: 477 SDILGEEDHLGDMDFKVAGTCDG-ITGFQMDVKVEAVSASLMKEALQQARVGR 528 Score = 81.5 bits (200), Expect = 2e-14, Method: Composition-based stats. Identities = 47/215 (21%), Positives = 80/215 (37%), Gaps = 23/215 (10%) Query: 13 PVTLTRNYT-KHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTH 71 P+ L Y + A GSV ++ T +L T + +G +T ++ + Sbjct: 13 PLLLESGYLARQANGSVYLQCEGTAILATVC---SSAQRQEGLDYVPLTVDFNEKYYAVG 69 Query: 72 TRNAREAAK-GKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQAD--GGTRTA 128 + G+ R + I RLI R +R + I + + +D Sbjct: 70 KMPGGFIKREGRPKDREILISRLIDRPMRP--LFEKEFGRDIHVVPTCISSDMVHPHDVL 127 Query: 129 SITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMN 188 +I + A+ L P G VAAV V +NG V + + + AA ++ Sbjct: 128 AIVASSAAV-----------TLSDIPFHGPVAAVRVAYLNGSYVINPTFSQIDAASMEVV 176 Query: 189 VVMTEDGRIIEVQGTAEGEPFTHEELLILLALARG 223 V T G I V+G A + + +L L A+ Sbjct: 177 VAGTRQG-ITMVEGGARE--VSEDLMLGALEQAQE 208 >UniRef50_C7MNH4 Polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) n=7 Tax=Coriobacteriaceae RepID=C7MNH4_CRYCD Length = 742 Score = 192 bits (487), Expect = 1e-47, Method: Composition-based stats. Identities = 49/232 (21%), Positives = 91/232 (39%), Gaps = 24/232 (10%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQG 57 R GR+ +++RP+ + Y GS L + G T+ L ++ E + Sbjct: 315 RVDGRAADEIRPLYIRPGYLPRVHGSGLFQRGQTQALSVCTLGTLREGQRLDTIDPSEGK 374 Query: 58 WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCD 117 +Y P T G R + L RAL + + + I + + Sbjct: 375 RYMHQYNFPPYCTGEV----GRIGAPKRREIGHGALAERALIPVLPSEDDFPYAIRVVSE 430 Query: 118 VLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNG----EAVC 173 +L+++G + AS G+ +AL+DA P+ V+ +++G++ + Sbjct: 431 ILESNGSSSMASTCGSTLALMDA-----------GVPITAPVSGIAMGLIKEGDETVILS 479 Query: 174 DLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 D++ +ED + D V T G I +Q + + E L LA A+ Sbjct: 480 DIQGLEDFLGDMDFKVTGTARG-ITALQMDNKARGLSTEILGRALAQAKEGR 530 Score = 62.3 bits (150), Expect = 1e-08, Method: Composition-based stats. Identities = 38/213 (17%), Positives = 70/213 (32%), Gaps = 22/213 (10%) Query: 16 LTRN-YTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTHTRN 74 L K A G+VLV G+T L TA + + + +T ++ + Sbjct: 17 LETGELAKQATGAVLVTQGETTCLVTAVVSKEEKDYDFFP----LTVDFMEKMYAVGRIP 72 Query: 75 AREAAK-GKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTASITGA 133 + GK + R+I R +R + + + ADG I Sbjct: 73 GGYLKREGKASDKGTLTARMIDRPIRPGFP--DGFKQEVHIVATTFVADGQNPPDCIC-- 128 Query: 134 CVALVDALQKLVENGKLKTNPMKGMVAAVSVG--IVNGEAVCDLEYVEDSAAETDMNVVM 191 + P G A V + + GE + + Y E ++ ++ + Sbjct: 129 -------VGGASAALLAGGAPFDGPAACVRIARNVETGEFIVNPTYAEQEESDLELTIAG 181 Query: 192 TEDGRIIEVQGTAEGEPFTHEELLILLALARGE 224 T D I V+ A + E++L + + Sbjct: 182 TAD-YISMVEAGANE--VSEEDMLAAMNFGQEA 211 >UniRef50_Q72ER6 Polyribonucleotide nucleotidyltransferase n=17 Tax=Deltaproteobacteria RepID=PNP_DESVH Length = 760 Score = 191 bits (485), Expect = 2e-47, Method: Composition-based stats. Identities = 51/232 (21%), Positives = 90/232 (38%), Gaps = 25/232 (10%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQG 57 R GR VRP+ + A GS L G+TK L A++ +E L G Sbjct: 322 RIDGRDTTTVRPILIEAGILPRAHGSALFARGETKSLVVATLGSSTDEQRMDSLTGDVTK 381 Query: 58 WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCD 117 Y P + R + L +ALR + L FT+ + + Sbjct: 382 RFMLHYNFAPYCVGEVKPV-----RVSRREIGHGALAEKALRPILPLGEDFPFTLRVVAE 436 Query: 118 VLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVN----GEAVC 173 ++++G + A++ G C++L+DA P+ VA V++G++ + Sbjct: 437 TMESNGSSSMAAVCGGCLSLMDA-----------GVPITAPVAGVAMGLIKEGDQYVVLT 485 Query: 174 DLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 D+ ED+ + D + T +G I VQ + + + + + AR Sbjct: 486 DILGDEDALGDMDFKIAGTSEG-ITAVQMDIKVKGLPTDVMARAMQQARDAR 536 Score = 86.2 bits (212), Expect = 8e-16, Method: Composition-based stats. Identities = 44/219 (20%), Positives = 79/219 (36%), Gaps = 21/219 (9%) Query: 13 PVTLTRN-YTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTH 71 + A+G+V ++ G T VL TA + G +T EY + Sbjct: 18 EIVFETGRLANQADGAVWIQCGGTVVLVTA----CSQATDRDLGFFPLTVEYSEKMYAAG 73 Query: 72 TRNAREAAK--GKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTAS 129 + G+ R + RLI R +R E + + + + + Sbjct: 74 RIPGSFFRREIGRPSERETLVSRLIDRPIRPLFPKGLKDEVQVLANVISSDQNNDSDVLA 133 Query: 130 ITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNV 189 +TGA AL L + P G VA +G ++G+ V + E ++ ++ + Sbjct: 134 VTGASTAL-----------GLSSIPFDGPVAGARIGRIDGQFVINPTIKEMERSDLNIVL 182 Query: 190 VMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 + D ++ V+G A P ++ L E PL Sbjct: 183 AASRD-AVVMVEGEASFVP--EAVIVEALEWGHKEIQPL 218 >UniRef50_B3QZG1 Polyribonucleotide nucleotidyltransferase n=1 Tax=Candidatus Phytoplasma mali AT RepID=PNP_PHYMT Length = 728 Score = 190 bits (484), Expect = 2e-47, Method: Composition-based stats. Identities = 46/237 (19%), Positives = 96/237 (40%), Gaps = 28/237 (11%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQ 56 +RP GR+++++R +T + GS L G T+ L ++ E + L + Sbjct: 337 IRPDGRNSSEIRSITSRIDILPRTHGSALFTRGGTQSLAIVTLGTLRESKIIDDLSDEVD 396 Query: 57 GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 Y + + R + L +AL + + ++I + Sbjct: 397 KRFMLHYNFPAFAVGSV----GRYLAPSRREIGHGMLAEKALECVLPSENDFPYSIRVVS 452 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV--------N 168 ++L ++G + A+I + +AL+ A P+K +VA V++G++ + Sbjct: 453 EILDSNGSSSQATICASSMALMSA-----------GVPLKSLVAGVAMGLIVDDIDKINH 501 Query: 169 GEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 + D+E +ED + D + T+ G I +Q + + T E +L A+ + Sbjct: 502 YTILSDIEGLEDYQGDIDFKIAGTKVG-ITALQLDIKIKGITLEIFEKVLEQAKKDR 557 Score = 64.6 bits (156), Expect = 2e-09, Method: Composition-based stats. Identities = 35/215 (16%), Positives = 71/215 (33%), Gaps = 27/215 (12%) Query: 14 VTLTRN-YTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTHT 72 + + ++ A GSV++ + DT +L A + +T Y + Sbjct: 22 LRIEIGEISRQANGSVMLFYKDTVILSVAVCGDKK----NSLNFLPLTVNYQEKLYAAGK 77 Query: 73 RNAREAAK-GKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTASIT 131 + GK + + RLI R +R + + L VL +D +I Sbjct: 78 IPGGFLRREGKPSDQEILCSRLIDRTIRP--LFSKNFKNEVQLINMVLSSDPDGNNENIA 135 Query: 132 GACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNVVM 191 L + P V++V VG + + + + + + + Sbjct: 136 ---------LLGSSLALLISDIPFFEPVSSVCVGKIGDNLIINPTLSQRENSSFFLILAG 186 Query: 192 TEDGRIIEVQGTAEGEP---------FTHEELLIL 217 T+D + V+ +++ F HE + L Sbjct: 187 TKD-SLNMVEMSSKEISENNFLESIKFGHEIIKKL 220 >UniRef50_A9TY02 Predicted protein n=3 Tax=Viridiplantae RepID=A9TY02_PHYPA Length = 246 Score = 190 bits (483), Expect = 3e-47, Method: Composition-based stats. Identities = 60/227 (26%), Positives = 95/227 (41%), Gaps = 20/227 (8%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVP-RFLKGQGQGWI 59 +R GR ++R + A+GS L G+T+V+ V + + + + Sbjct: 11 LRLDGRRPPEMRHLHAVVGVVPSADGSALFHMGNTQVMAVVYGPHEVHNKAHQLHDKALV 70 Query: 60 TAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVL 119 EY M ST R R + E+ +I + L AA+ L I + VL Sbjct: 71 RCEYSMAAFSTGERRRRGKTDRR----ATELSLVIGQTLEAAIMTHLLPRSQIDIYVQVL 126 Query: 120 QADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVE 179 QADGGTR A I A +AL DA PM+ +V + + G +N + DL Y E Sbjct: 127 QADGGTRAACINAASMALADA-----------GIPMRDLVVSCAAGYLNSTPLLDLNYQE 175 Query: 180 DSAAETDMNVV-MTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 DS D+ V + ++ +Q ++ + E +L LA + Sbjct: 176 DSGGGPDLVVGYFPKLEKLSLLQMDSK---VSIETFEKVLELATEGA 219 >UniRef50_Q1J1D0 Polyribonucleotide nucleotidyltransferase n=6 Tax=Deinococci RepID=PNP_DEIGD Length = 721 Score = 190 bits (482), Expect = 4e-47, Method: Composition-based stats. Identities = 55/233 (23%), Positives = 98/233 (42%), Gaps = 24/233 (10%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQ 56 +R GR++ VRP+ + A GS + G+T+VL ++ +E + L G+ Sbjct: 318 LRADGRNSKTVRPIWIEARPLPRAHGSAIFTRGETQVLGVTTLGTERDELLVDNLTGETN 377 Query: 57 GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 Y P ST G Q R + L RA+RA + + I + Sbjct: 378 DRFLLHYNFPPYSTGEVKR----VGGQSRREVGHGNLAKRAIRAVLPAFDDFPYVIRVVG 433 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV----NGEAV 172 +VL+++G + A++ ++L+DA P++ VA V++G+V + Sbjct: 434 EVLESNGSSSMATVCAGTLSLMDA-----------GVPIQAPVAGVAMGLVMEGEQYRIL 482 Query: 173 CDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 D+ +ED+ + D V T +G + +Q + T + LA AR Sbjct: 483 TDILGLEDALGDMDFKVCGTAEG-VTALQMDIKVSGVTPAIMREALAQAREAR 534 Score = 84.6 bits (208), Expect = 2e-15, Method: Composition-based stats. Identities = 44/212 (20%), Positives = 74/212 (34%), Gaps = 20/212 (9%) Query: 12 RPVTLTRNYTKH-AEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRST 70 R +++ A GSV + +GDT +L TA E +T E+ + Sbjct: 13 RELSIETGKLAKLASGSVTLRYGDTLLLVTAQAREE----RSTLDFLPLTVEFEERHYAV 68 Query: 71 HTRNAREAAK-GKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTAS 129 + G+ G + R+ R +R E + + Sbjct: 69 GRIPGSFHRREGRPGEHAILSARITDRQIRPLFPKGYRQETQVIITVLSADQQNAPDVLG 128 Query: 130 ITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNV 189 GA AL L P G A V VG+++GE V + + + + D+ V Sbjct: 129 AIGASAAL-----------SLSDIPWNGPTACVRVGMIDGEYVINPTSDQLTRSSLDLVV 177 Query: 190 VMTEDGRIIEVQGTAEGEPFTHEELLILLALA 221 T D + V+ A+G + E L+ + A Sbjct: 178 AGTRD-AVNMVEAGAQG--VSEETLVGAIEFA 206 >UniRef50_B7G0I4 Predicted protein n=2 Tax=Bacillariophyta RepID=B7G0I4_PHATR Length = 830 Score = 188 bits (479), Expect = 8e-47, Method: Composition-based stats. Identities = 54/239 (22%), Positives = 89/239 (37%), Gaps = 30/239 (12%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRF----LKGQGQ 56 +R GR +R +T+ GS L G+T+ + T ++ R L G + Sbjct: 389 LRCDGRGPTDIRQLTMETGLLPRVHGSALFTRGETQCVATTTLGGSGMRQKIEKLDGTDE 448 Query: 57 GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 +Y P G G R + L RAL + A +TI ++ Sbjct: 449 KRFYLQYTFPPSCVGE----TGRVGAPGRREVGHGNLAERALIPTIPALADFPYTIRVES 504 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGE------ 170 + ++ G + AS+ G +AL+DA P+K VA +++G++ G+ Sbjct: 505 LITESHGSSSMASVCGGSLALMDA-----------GVPIKAPVAGIAMGMLLGDKGGVSD 553 Query: 171 ----AVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 + D+ ED+ D V G I Q + E T E + L AR Sbjct: 554 ENAVILSDILGTEDALGTMDFKVAGDRVG-ISTFQLDIKCEGLTLETMESALEQARTGR 611 Score = 65.7 bits (159), Expect = 1e-09, Method: Composition-based stats. Identities = 40/201 (19%), Positives = 76/201 (37%), Gaps = 22/201 (10%) Query: 13 PVTLTRNYT-KHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEY-GMLPRST 70 P+ + + A G+V + GD+ + T S ++ + ++ +Y + Sbjct: 89 PICIETGKIGRQAAGAVTLTRGDSVLYATTSHDKDPKEEIDF---CPLSVDYQERFSSAG 145 Query: 71 HTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADG--GTRTA 128 T G+ + RLI R LR + E L VL DG Sbjct: 146 LTSGGYNKRDGRPAEHEILTCRLIDRPLRPLIQSGWRHETQ--LLSWVLSYDGERSCDPL 203 Query: 129 SITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVG-IVNGEAVCDLEYVEDSAAETDM 187 +I + +L + P+ VAAV VG +G V + ++ ++ ++ Sbjct: 204 AIIASASSLF-----------ISDVPLHKPVAAVQVGMKDDGTLVVNPTNLQMETSKLNL 252 Query: 188 NVVMTEDGRIIEVQGTAEGEP 208 V TE+ ++ ++G A+ P Sbjct: 253 MVAGTEE-AVLMIEGAADFLP 272 >UniRef50_Q7V606 Polyribonucleotide nucleotidyltransferase n=50 Tax=cellular organisms RepID=PNP_PROMM Length = 723 Score = 186 bits (473), Expect = 4e-46, Method: Composition-based stats. Identities = 51/233 (21%), Positives = 93/233 (39%), Gaps = 25/233 (10%) Query: 2 RPAGRSNNQVRPVTLTRNYTK-HAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQ 56 R GR ++VRP++ GS L + G T+VL TA++ + L + Sbjct: 325 RVDGRKLDEVRPISSAAGVLPKRVHGSGLFQRGLTQVLSTATLGTPSDAQEMDDLNPGPE 384 Query: 57 GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 Y P S + G R + L RA+ + K + + + Sbjct: 385 KTYLHHYNFPPYSVGETRPMRS----PGRREVGHGSLAERAIIPVLPPKDSFPYVLRVVS 440 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGE----AV 172 +VL ++G T S+ G+ +AL+DA P+K V+ ++G++ + + Sbjct: 441 EVLSSNGSTSMGSVCGSTLALMDA-----------GVPLKAPVSGAAMGLIKEDAEIRIL 489 Query: 173 CDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 D++ +ED + D V T+DG I +Q + + + + AR Sbjct: 490 TDIQGIEDFLGDMDFKVAGTKDG-ITALQMDMKITGLPVKTIAEAVNQARPAR 541 Score = 95.4 bits (236), Expect = 1e-18, Method: Composition-based stats. Identities = 57/225 (25%), Positives = 87/225 (38%), Gaps = 32/225 (14%) Query: 12 RPVTLTRN-YTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYG------ 64 R + LT Y A GSV++E GDT VL TA+ G +G + +Y Sbjct: 13 REIRLTTGRYAPQAGGSVMMECGDTAVLVTATRSTG----REGIDFLPLICDYEERLYAA 68 Query: 65 -MLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADG 123 +P S R G+ R I RLI R +R + I C L Sbjct: 69 GRIPGSFMRRE------GRPPERATLIARLIDRPMRPLFPSWMRDDLQIVATCLSLDERV 122 Query: 124 GTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAA 183 ++TGA +A + A P +G +AAV VG++ + V + Y E Sbjct: 123 PADVLAVTGASMATLLAS-----------IPFQGPMAAVRVGLLGDDFVLNPSYREIERG 171 Query: 184 ETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 + D+ V T DG ++ V+ A P +++ + L Sbjct: 172 DLDLVVAGTPDG-VVMVEAGANQLP--QGDVIEAIDFGYEAVCEL 213 >UniRef50_Q965N3 Putative uncharacterized protein n=2 Tax=Caenorhabditis elegans RepID=Q965N3_CAEEL Length = 745 Score = 186 bits (473), Expect = 4e-46, Method: Composition-based stats. Identities = 54/242 (22%), Positives = 94/242 (38%), Gaps = 34/242 (14%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIE--------EGVPRFLK 52 +R GR ++ RP+T+ + K G + + G T+V+ T + + + V + L Sbjct: 333 IRCDGRRPDEFRPITIHVDMYKKLHGCSIFQRGQTQVMSTVTFDSPAAAFHPDSVAQLLG 392 Query: 53 GQGQGWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTI 112 Q + Y + + R + L ++L+ A + Sbjct: 393 SQRKKSFMLHYEFPGFAINEF----GTTRSLNRREIGHGALAEKSLKNLFP--ADFPYAT 446 Query: 113 TLDCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGE-- 170 L C VL+++G + AS+ G +AL DA PMK A V++G+++ E Sbjct: 447 RLACQVLESNGSSSMASVCGGSLALFDA-----------GVPMKNAAAGVAIGLISDEAE 495 Query: 171 ------AVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGE 224 + D+ +ED A + D V T DG Q + T +L L AR Sbjct: 496 PETKYRVLTDILGIEDYAGDMDFKVAGTRDG-FTAAQLDVKNGGLTRRQLTESLQAARAG 554 Query: 225 SN 226 + Sbjct: 555 ID 556 Score = 63.8 bits (154), Expect = 4e-09, Method: Composition-based stats. Identities = 41/213 (19%), Positives = 73/213 (34%), Gaps = 24/213 (11%) Query: 14 VTLTRNYTKH-AEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGW-ITAEYGMLPRSTH 71 + L + A +V+ FGD V+ T + +G G G + EY S Sbjct: 38 IELKAGHLARFASSTVVASFGDNAVMATVVQRKSK----QGDGSGVPLQVEYR-PSASAI 92 Query: 72 TRNAREAAKGK--QGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTAS 129 R + + Q + I R I R++R + + E I L + Sbjct: 93 GRIPTNFLRRELSQSDNEILISRAIDRSIRPLLPGNSY-ETQIICKPLALDENADQIMLG 151 Query: 130 ITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGI-VNGEAVCDLEYVEDSAAETDMN 188 I A AL ++ + G +AA+ V G+ + E A ++ Sbjct: 152 INAASTAL-----------QISSAAYNGPLAALRVARTARGDFHVNPTQEELREASLNLI 200 Query: 189 VVMTEDGRIIEVQGTAEGEPFTHEELLILLALA 221 V M + + + ++ + E L L +A Sbjct: 201 VAMRKHEKTVMIELDGRES--SAEHLEHALDVA 231 >UniRef50_B7ATJ6 Putative uncharacterized protein n=2 Tax=Bacteria RepID=B7ATJ6_9BACE Length = 742 Score = 186 bits (472), Expect = 5e-46, Method: Composition-based stats. Identities = 49/235 (20%), Positives = 87/235 (37%), Gaps = 27/235 (11%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI-EEGVPRFLKGQGQ---- 56 RP GR+ Q+RP+ + GS + G T++ ++ + + G + Sbjct: 358 RPDGRAITQIRPLAAEIDLIPRVHGSAMFTRGQTQICDVVTLAPLSEAQKVDGLDENVTA 417 Query: 57 GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 Y S G R + L RAL + + + I Sbjct: 418 KRYIHHYNFPSYSVGETK----PSRGPGRREIGHGALAERALIPVLPSEEEFPYAIRAVS 473 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGE------ 170 + +++G T AS +C++L+ A P+K MVA +S G+V G+ Sbjct: 474 ETFESNGSTSMASTCASCMSLMAA-----------GVPIKRMVAGISCGLVTGDTDDDYI 522 Query: 171 AVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 + D++ +ED + D V T +G I +Q + T + +A R Sbjct: 523 VLTDIQGLEDFFGDMDFKVTGTTEG-ITAIQMDIKIHGLTRPIVEEAIARTREAR 576 Score = 78.1 bits (191), Expect = 2e-13, Method: Composition-based stats. Identities = 41/201 (20%), Positives = 75/201 (37%), Gaps = 21/201 (10%) Query: 12 RPVTLTRN-YTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRST 70 R +T+ A G+ L+ +GDT VL TA+ + +G ++ EY + Sbjct: 58 RTLTVDVGRVCAQANGAALMHYGDTVVLSTATASKEP---REGIDFFPLSVEYEEKLYAV 114 Query: 71 HTRNAREAAK-GKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRT-- 127 + GK + R+I R +R +TL+ V+ D R Sbjct: 115 GKIPGGFNKREGKASENAILTSRVIDRPMRPLFP--KDYRNDVTLNNMVMSVDPECRPEL 172 Query: 128 ASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDM 187 ++ GA +A + P G A +G+++GE V + + + + Sbjct: 173 VAMLGASIA-----------TCISDIPFDGPCAMTQLGMIDGEFVVNPSQEQWKNGDLRL 221 Query: 188 NVVMTEDGRIIEVQGTAEGEP 208 V T ++I ++ A P Sbjct: 222 TVASTSQ-KVIMIECGANEVP 241 >UniRef50_Q1G2Y1 Chloroplast polyribonucleotide phosphorylase n=5 Tax=cellular organisms RepID=Q1G2Y1_CHLRE Length = 854 Score = 185 bits (471), Expect = 7e-46, Method: Composition-based stats. Identities = 53/239 (22%), Positives = 91/239 (38%), Gaps = 30/239 (12%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI-------EEGVPRFLKG 53 +R GR +RPVT GS L G+T+ +C A++ R G Sbjct: 415 VRADGRGVADIRPVTCRAGLLPRTHGSALFTRGETQSICVATLGSANDALRSDTMRKPDG 474 Query: 54 QG--QGWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFT 111 + G +Y P S G G R + L RAL + A +T Sbjct: 475 EDPESGRFYLQYHFPPSSVGE----TGRTGAPGRRELGHGELAQRALAPILPDPAQFPYT 530 Query: 112 ITLDCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV---- 167 + ++ + +++G + AS+ G C+A++DA P+ VA +++G++ Sbjct: 531 VRVESTITESNGSSSMASVCGGCLAMMDA-----------GVPIARPVAGIAMGLILESN 579 Query: 168 -NGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 + D+ ED+ + D V D I Q + E T + + L A+ Sbjct: 580 GRNAVLSDILGSEDALGDMDFKVAGDHD-AITAFQMDIKVEGITLDIMAKALQQAKAGR 637 Score = 48.0 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 40/210 (19%), Positives = 72/210 (34%), Gaps = 22/210 (10%) Query: 13 PVTLTRNYT-KHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTH 71 + L + A G+++ G+T + TA +T Y S Sbjct: 96 EIKLETGEIGRQANGAIMATAGETMLYATACCSASP---TGDGSFTPLTVNYA-ERFSAA 151 Query: 72 TRNAREAAK--GKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTAS 129 R + K G+ + + RL+ R +R + I VL DG Sbjct: 152 GRTSGGFVKRDGRPRDAEVLVSRLVDRPIRPMFAKGWANDTQIL--EWVLSYDGVNDP-- 207 Query: 130 ITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGI-VNGEAVCDLEYVEDSAAETDMN 188 A+ + P+K VA V VG+ +G + + E + D+ Sbjct: 208 -------EPLAITAAAAALLISDIPLKKAVAGVRVGMSADGGFIINPTVEEMETSRLDLM 260 Query: 189 VVMTEDGRIIEVQGTAEGEPFTHEELLILL 218 V T D ++ ++G + T E+++ L Sbjct: 261 VAGTRD-AVLMIEGFCDF--LTEEQMIEAL 287 >UniRef50_D1B019 Polyribonucleotide nucleotidyltransferase n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1B019_SULD5 Length = 746 Score = 185 bits (471), Expect = 8e-46, Method: Composition-based stats. Identities = 56/238 (23%), Positives = 94/238 (39%), Gaps = 28/238 (11%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFL------KGQ 54 +R GR ++RP+++ N A GS L G T+ L A++ + K Sbjct: 343 VRADGRKLTEIRPISIETNLLPLAHGSCLFTRGQTQALVIATLGNDKDAQMYDLLTEKSS 402 Query: 55 GQGWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITL 114 Y S + A G R + L RAL VD+ L TI L Sbjct: 403 VSDTFMVNYNFPGFSVGEASPLRA----PGRRELGHGNLARRALEPVVDINRL--QTIRL 456 Query: 115 DCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV----NGE 170 ++L+++G + A+I G +AL K ++ +VA +++G+V Sbjct: 457 VSEILESNGSSSMATICGGALAL-----------KAAGVEIEKLVAGIAMGLVFEGDKHA 505 Query: 171 AVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 + D+ +ED + D V T+DG I +Q + + + L L AR + Sbjct: 506 VLSDIMGLEDHDGDMDFKVAGTKDG-ITALQMDIKLGGISRDVLKEALYQAREGREHI 562 Score = 69.2 bits (168), Expect = 1e-10, Method: Composition-based stats. Identities = 38/212 (17%), Positives = 70/212 (33%), Gaps = 21/212 (9%) Query: 13 PVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTHT 72 + K A G+ L++ +T +L T + ++ + +T +Y + Sbjct: 12 EIYDIGKVAKQAAGAALLKIKNTVILATVARDDTQV----SENFVPLTVQYVEKSYAVGK 67 Query: 73 RNAREAAKG-KQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTASIT 131 + K G R+I R+LR IT+ VL D Sbjct: 68 IPGGYIKRETKPGDFETLTSRIIDRSLRPLFPKGYAYPTQITVF--VLSCDAEVDLQ--- 122 Query: 132 GACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNVVM 191 V AL L P+ VA V +G V+G V + + D+ V Sbjct: 123 ------VAALNAAGAALYLSDIPVNKAVAGVRIGYVDGAYVVNPSNSLLKKSTLDLYVAG 176 Query: 192 TEDGRIIEVQG----TAEGEPFTHEELLILLA 219 T++ ++ ++ + E + +L Sbjct: 177 TKE-ELLMIEMRSIASMESVSLPVMAIDPMLD 207 >UniRef50_C7LKG2 Putative polyribonucleotide nucleotidyltransferase n=1 Tax=Candidatus Sulcia muelleri SMDSEM RepID=C7LKG2_SULMS Length = 691 Score = 185 bits (470), Expect = 1e-45, Method: Composition-based stats. Identities = 51/232 (21%), Positives = 93/232 (40%), Gaps = 28/232 (12%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTAS----IEEGVPRFLKGQGQG 57 R GRS + +R + N+ GS + G+T+ L T + ++ + Q Q Sbjct: 319 RLDGRSLDDLRKIWSQTNFLPSVHGSAIFSRGETQALSTVTLGSSLDVNKIDNVILQDQQ 378 Query: 58 WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCD 117 Y P ST + R + L RAL+ + K +TI + D Sbjct: 379 KFYLHYNFPPFSTGEIKLLKG----ISRREIGHGNLAQRALKNIIPFKT--PYTIRVVSD 432 Query: 118 VLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNG------EA 171 +L+++G + A++ + +AL+DA P+K V+ +S+G++ Sbjct: 433 ILESNGSSSMATVCASTLALMDA-----------GIPIKRPVSGISMGLIINFLTDEAII 481 Query: 172 VCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARG 223 + D+ ED+ + D + T+ G I Q +E LL + A+ Sbjct: 482 LSDILGDEDNIGDMDFKMTGTKFG-ITACQMDINFPGSNYEMLLNSIFKAKN 532 Score = 71.5 bits (174), Expect = 2e-11, Method: Composition-based stats. Identities = 34/211 (16%), Positives = 74/211 (35%), Gaps = 21/211 (9%) Query: 14 VTLTRNYTK-HAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTHT 72 +++ A G+ +V G T ++ T I + + +G + +Y S Sbjct: 18 ISIETGKLACQANGTAVVRMGKTSLIATIVISK---KEKEGINFLPLIIDYK-ENYSAGG 73 Query: 73 RNAREAAKG--KQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTASI 130 + K + + RLI R LR L E I + + + Sbjct: 74 KIPGGFIKRERRPSDEEVLTMRLIDRLLRPLFPQNFLKEIQIIIYLLSYDRNVLPDGLAG 133 Query: 131 TGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNVV 190 A A+ + P KG V+AV + + + ++ ++ + Sbjct: 134 LVASAAV-----------SISGIPFKGPVSAVRIIRFKNSFLINPGIKSVKKSDINLIIG 182 Query: 191 MTEDGRIIEVQGTAEGEPFTHEELLILLALA 221 T++ I+ ++G E + + E++ + +A Sbjct: 183 GTKN-SILMIEG--EMKEISENEIIYFIKIA 210 >UniRef50_C3XH48 Polyribonucleotide nucleotidyltransferase n=1 Tax=Helicobacter bilis ATCC 43879 RepID=C3XH48_9HELI Length = 734 Score = 184 bits (468), Expect = 2e-45, Method: Composition-based stats. Identities = 52/232 (22%), Positives = 89/232 (38%), Gaps = 28/232 (12%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQG 57 R GR+ ++R +++ N GS G T+ L T ++ + + QG+ Sbjct: 353 RADGRALREIREISIESNLLPKTHGSACFTRGQTQALVTCTLGSQNDAQTQEGILTQGKS 412 Query: 58 WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCD 117 I Y P S G R + L +A+ + V A TI L + Sbjct: 413 KIIFHYNFPPFSVGE----AYPIGASSRRELGHGNLALKAIESNV---ANTPHTIRLVSE 465 Query: 118 VLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV-----NGEAV 172 +LQ++G + AS+ GA +AL+ A M MVA +++G++ + Sbjct: 466 ILQSNGSSSMASVCGASLALLGA-----------DIKMHNMVAGIAMGLIYESEERFAIL 514 Query: 173 CDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGE 224 D+ +ED + D + E G +Q + + L L AR Sbjct: 515 SDIMGLEDFDGDMDFKIAGNEKG-FSALQLDIKIHGLSESILNQSLEQAREG 565 Score = 66.9 bits (162), Expect = 6e-10, Method: Composition-based stats. Identities = 35/219 (15%), Positives = 75/219 (34%), Gaps = 27/219 (12%) Query: 24 AEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTHTRNAREAAK-GK 82 A+ SV+++ G + +LC+ ++ P + ++ +Y + K GK Sbjct: 52 ADRSVMLKVGGSVLLCSVCVDYENP---SSEDFLPLSVQYVEKMYAIGKIPQGFLKKEGK 108 Query: 83 QGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTA--SITGACVALVDA 140 + I RLI R+LR + + + V+ D ++ A + L + Sbjct: 109 PSDNEILISRLIDRSLRPLFP--KDYPYPVQITILVMSYDNKIDICQKAMNLASICLYLS 166 Query: 141 LQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEV 200 L + G L + DL + +S + ++ + + +IE+ Sbjct: 167 SIPLTQKGILNGIRVMRR-------DDEFSLCDDLNDLLESKLDLFVS-GINNNVSMIEM 218 Query: 201 QG-----------TAEGEPFTHEELLILLALARGESNPL 228 Q + +LL + LA+ + Sbjct: 219 QSLKTTTQNKDSIIENANEISKNDLLEAINLAKKHIETM 257 >UniRef50_A7I002 Polyribonucleotide nucleotidyltransferase n=2 Tax=Campylobacter RepID=PNP_CAMHC Length = 711 Score = 184 bits (468), Expect = 2e-45, Method: Composition-based stats. Identities = 48/235 (20%), Positives = 92/235 (39%), Gaps = 28/235 (11%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFL------KGQG 55 R GR+ +++RP+++ N +A GS L G T+ L ++ + Sbjct: 323 RADGRALDEIRPISIETNILPNAHGSCLFTRGQTQALVVTTLGGETDAQVSDSLTSNTPI 382 Query: 56 QGWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLD 115 +Y + ++ G R + L RAL +V L I Sbjct: 383 SERFMFQYNFPGFCVGEASPLKS----PGRRELGHGNLAKRALTPSVPLN--NPQVIRTV 436 Query: 116 CDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGE----A 171 ++L+++G + AS+ G ++L A ++ +VA V++G++ + Sbjct: 437 SEILESNGSSSMASVCGGSLSLRAAGVSTLK-----------LVAGVAMGLIFEDDKHAI 485 Query: 172 VCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESN 226 + D+ +ED + D V T +G I +Q + + E L L A+ N Sbjct: 486 LTDIMGLEDHDGDMDFKVAGTREG-ITALQMDIKLGGISLEILREALNQAKDGRN 539 Score = 88.8 bits (219), Expect = 1e-16, Method: Composition-based stats. Identities = 44/216 (20%), Positives = 71/216 (32%), Gaps = 28/216 (12%) Query: 20 YTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTHTRNAREAA 79 K A G+ L++ +T VL T + E + +T +Y + Sbjct: 19 VAKQAAGACLMKVKNTVVLATVARENTQVE----EDFLPLTVQYIEKQYAAGRIPGGYIK 74 Query: 80 KG-KQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTR--TASITGACVA 136 + K G R+I R+LR I + VL AD + A VA Sbjct: 75 RETKPGDFETLTSRIIDRSLRPLFPKGYAYPTQIVVF--VLSADPEIDLQVVGLNAASVA 132 Query: 137 LVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNVVMTEDGR 196 L L PMK V V VG +N V + E + D+ V +D Sbjct: 133 L-----------YLSDIPMKAPVCGVRVGYINDSFVINPTNSELQNSALDLYVAGVKDEM 181 Query: 197 II-----EVQGTAEG---EPFTHEELLILLALARGE 224 ++ E F+ ++++ + A Sbjct: 182 LMIEMRSLPNMNGENQNMNEFSEDKMVEAIDFASKA 217 >UniRef50_A8PS54 3' exoribonuclease family, domain 2 containing protein n=1 Tax=Brugia malayi RepID=A8PS54_BRUMA Length = 752 Score = 184 bits (467), Expect = 2e-45, Method: Composition-based stats. Identities = 52/241 (21%), Positives = 98/241 (40%), Gaps = 32/241 (13%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIE--------EGVPRFLKG 53 R GR N++RPV + + K+ GS L + G T+V T + + + + + L Sbjct: 349 RCDGRKFNELRPVNIRMDVHKNLHGSALFQRGQTQVFSTVTFDAPSAAFQPDALSQLLGA 408 Query: 54 QGQGWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTIT 113 Q + Y +T ++ + R + L +AL+ + + + Sbjct: 409 QQKKMFMLHYQFPSFATT----AISSSARTSRRELGHGALAEKALKRLIP--DDFPYCLR 462 Query: 114 LDCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV------ 167 L CDVL+++G + AS+ C+AL+DA +K A +++G++ Sbjct: 463 LACDVLESNGSSSMASVCAGCLALLDA-----------GVQIKAPAAGIAMGLIINEERN 511 Query: 168 NGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNP 227 + + D+ +ED A + D + T G +Q + T + + L AR Sbjct: 512 DYRILTDINGLEDFAGDMDFKIAGTVRG-YTAMQLDLKVPGITPKLVTESLKQARNGLEH 570 Query: 228 L 228 L Sbjct: 571 L 571 Score = 88.5 bits (218), Expect = 2e-16, Method: Composition-based stats. Identities = 39/205 (19%), Positives = 72/205 (35%), Gaps = 21/205 (10%) Query: 14 VTLTRNYTKH-AEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTHT 72 + + A+G+V+V G+T VL T +T ++ + Sbjct: 45 IRFETGHIARLADGAVVVSQGETSVLATVVGRHSSAS--DTADFMPLTVDFQQSASAVG- 101 Query: 73 RNAREAAKGKQGGRTMEI--QRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTASI 130 R + + +I R+I R++R GE I + DG + Sbjct: 102 RIPMNYLRRELQRNDADILASRMIDRSIRPLFPKDYSGETQIICKPLAVDDDGDPVMLGL 161 Query: 131 TGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNVV 190 A AL L P +G + AV V ++N E V + ++ D+ + Sbjct: 162 NAASAAL-----------TLSDIPWEGPLGAVRVALINNEVVVNPSRKNMKSSSVDLVIA 210 Query: 191 MTEDGR-IIEVQGTA---EGEPFTH 211 ++G+ I+ + E E F+ Sbjct: 211 GCDNGKRILMIDMDGCEIEMENFSE 235 >UniRef50_B3T6G7 Putative 3' exoribonuclease family, domain 1 n=1 Tax=uncultured marine microorganism HF4000_APKG2H5 RepID=B3T6G7_9ZZZZ Length = 238 Score = 183 bits (465), Expect = 4e-45, Method: Composition-based stats. Identities = 60/220 (27%), Positives = 94/220 (42%), Gaps = 21/220 (9%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIE-EGVPRFLKGQGQGWIT 60 R GR +RP+++ A GS V +G V+ E PR + Q + + Sbjct: 16 RMDGRKPADLRPISIEVGVVPVAAGSACVRWGTNHVIAAVYGPMEAHPRKISRQDRAVLD 75 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 Y M P ST R + R+ EI ++ + AL + V L+ I ++ ++L Sbjct: 76 VRYNMAPFSTTDR-----IRPGFNRRSREISKVTSDALESVVLLEMYPRSKIRVEIEILC 130 Query: 121 ADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVED 180 A+ GTR +T A VAL A PM MV +V+ G +NG +CDL ED Sbjct: 131 AEAGTRCVGLTAASVALAHA-----------GIPMTDMVVSVASGKINGVVICDLNKEED 179 Query: 181 SAAETDMNVVM-TEDGRIIEVQGTAEGEPFTHEELLILLA 219 + E D+ + M G ++ +Q + P +E Sbjct: 180 NYGEADLPMGMLPNSGDLVFLQMDGDLSP---DEFQQAWD 216 >UniRef50_Q7UR95 Polyribonucleotide nucleotidyltransferase n=5 Tax=Planctomycetaceae RepID=PNP_RHOBA Length = 753 Score = 183 bits (465), Expect = 4e-45, Method: Composition-based stats. Identities = 49/236 (20%), Positives = 92/236 (38%), Gaps = 25/236 (10%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQG 57 RP GR +N +R + + GS L + G+T+ L T ++ +E L+ + Sbjct: 316 RPDGRDHNSLRAIHCETDLLPRVHGSALFQRGETQALITIALGTSRDEQRVDGLQDEYSK 375 Query: 58 WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCD 117 +Y S G R + L R++ + +TI + D Sbjct: 376 KFMLDYNFPSYSVGECRPIRG----PGRREIGHGCLAERSVAPVLPSADDFPYTIRVISD 431 Query: 118 VLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV-----NGEAV 172 + +++G + AS+ GA + L+ P+ VA +SVG+V N + Sbjct: 432 ITESNGSSSMASVCGATLGLM-----------ASGVPISNPVAGISVGLVQDGPDNWCLI 480 Query: 173 CDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 D+ ED + D + T++G I +Q + T++ + L +R + Sbjct: 481 TDILGTEDHFGDMDFKIAGTQNG-ITGIQLDLKVTGVTNDIIRATLKQSREARIEI 535 Score = 81.1 bits (199), Expect = 3e-14, Method: Composition-based stats. Identities = 47/219 (21%), Positives = 83/219 (37%), Gaps = 24/219 (10%) Query: 14 VTLTRNYT-KHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTHT 72 ++ + K A GSVLV++G+T VL A+ P G + +Y + Sbjct: 17 LSFETGHIAKQAAGSVLVQYGETVVLVAAASGTPRP----GIDFFPLMCDYRERLAAAGK 72 Query: 73 RNAREAAK-GKQGGRTMEIQRLIARALRAAVDLKALGEFTIT--LDCDVLQADGGTRTAS 129 + G+ + + RL+ R +R E + + LQ DG + Sbjct: 73 FPGGFLKREGRPSTKEILSSRLMDRPIRPLWPAGYKDEVQVQACVIASDLQNDGDVL--A 130 Query: 130 ITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNV 189 + G AL + P KG + +V VG V+G+ V + +E DM V Sbjct: 131 MIGGATALH-----------ISPLPFKGPLGSVRVGKVDGKLVAFPTADQLEQSELDMIV 179 Query: 190 VMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 + D + ++G A P +E++ + A + Sbjct: 180 SGSRD-MVAMIEGFANEMP--EDEMMEAIGFAHDAIREV 215 >UniRef50_Q6PBZ8 Exosc4 protein n=10 Tax=Metazoa RepID=Q6PBZ8_DANRE Length = 245 Score = 182 bits (462), Expect = 8e-45, Method: Composition-based stats. Identities = 58/230 (25%), Positives = 88/230 (38%), Gaps = 21/230 (9%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVP--RFLKGQGQGWI 59 R GR ++R V + A+GS +E G+TK L + R + I Sbjct: 13 RLDGRKATELRKVQARMSVFAQADGSAYLEQGNTKALAVVYGPHEIRGSRSKSLHDRAII 72 Query: 60 TAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVL 119 +Y M ST R R ++ E+ + + AAV + I + +L Sbjct: 73 NCQYSMATFSTAERKRRPHG----DRKSSEMSLHLKQTFEAAVLTELYPRSQIDIYVKIL 128 Query: 120 QADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVE 179 QADGG +A + A +ALVDA PM+ V A S G V + DL + E Sbjct: 129 QADGGNYSACVNAATLALVDA-----------GIPMRDYVCACSAGFVEDTPLADLCHAE 177 Query: 180 DSAAETDMNVV-MTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 +S T + + + G I +Q A + L L+ A Sbjct: 178 ESGGGTALALALLPRSGNIALLQMDAR---LHQDHLDTLMEAAMTACKEF 224 >UniRef50_B1ZS98 Polyribonucleotide nucleotidyltransferase n=7 Tax=Chlamydiae/Verrucomicrobia group RepID=PNP_OPITP Length = 730 Score = 182 bits (461), Expect = 1e-44, Method: Composition-based stats. Identities = 46/243 (18%), Positives = 84/243 (34%), Gaps = 31/243 (12%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI-----EEGVPRFLKGQG 55 +R GR +RP+ GS + + GDT+ + ++ + + G Sbjct: 315 VRADGRGQKDIRPLQAQVGVLPRVHGSAMFQRGDTQNIALTTLGPTKDAQDLDALTGGVK 374 Query: 56 QGWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLD 115 Y P S G R + L R+L + + + ++I + Sbjct: 375 SKSFLLHYNFPPFSVGETGRFTG----PGRREIGHGALAERSLVPVLPPEDVFPYSIRVV 430 Query: 116 CDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV-------- 167 +++ ++G T ASI G C++L+DA P+ VA +S G++ Sbjct: 431 SEIMASNGSTSMASICGGCLSLMDA-----------GVPIIAPVAGISCGLMTQNASDGS 479 Query: 168 --NGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 + D+ ED + D + T G I Q + E + AR Sbjct: 480 IEKWVTITDILGEEDHFGDMDFKLAGTSKG-ITGFQLDLKINGLPFEIAKTAIMQARDAR 538 Query: 226 NPL 228 + Sbjct: 539 MEI 541 Score = 67.7 bits (164), Expect = 3e-10, Method: Composition-based stats. Identities = 45/217 (20%), Positives = 78/217 (35%), Gaps = 19/217 (8%) Query: 14 VTLTRNYTKH-AEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTHT 72 +T + A G+V V+ G+T V TA + + GQ +T +Y + Sbjct: 14 ITFSTGSIAQLANGAVNVQVGETNVFVTACVAQTTKP---GQDWFPLTVDYREKYAAAGR 70 Query: 73 RNAREAAK-GKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTASIT 131 + G+ + + RL R R L E I + + + Sbjct: 71 FPGGYFKREGRPSEKEILTSRLCDRPCRPLFPEGFLNEVQIIGQLFSADLVNESDISMVN 130 Query: 132 GACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNVVM 191 GA AL + P G +AAV V + G+ V + + A+ D+ V Sbjct: 131 GASAALA-----------ISDIPWNGPIAAVRVAEIEGKFVANPTIDQMFASSLDLIYVG 179 Query: 192 TEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 E ++ ++G+A+ P E + LA P+ Sbjct: 180 NEK-DMLMIEGSADQIP--EERFIEALAFGHESIQPI 213 >UniRef50_A7GX79 Polyribonucleotide nucleotidyltransferase n=17 Tax=Epsilonproteobacteria RepID=PNP_CAMC5 Length = 735 Score = 181 bits (460), Expect = 1e-44, Method: Composition-based stats. Identities = 54/238 (22%), Positives = 100/238 (42%), Gaps = 28/238 (11%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI-EEGVPRFLKGQGQG-- 57 +R GR+ ++VRP+++ N +A GS L G T+ L A++ +G + + Sbjct: 343 VRADGRALDEVRPISIETNVLPNAHGSCLFTRGQTQALVVATLGTDGDAQMYDILTEKTA 402 Query: 58 ---WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITL 114 Y S + +A G R + L RAL ++D+ + +TI L Sbjct: 403 LIEKFMFNYNFPGFSVGEASPLKA----PGRRELGHGNLAKRALAPSIDINS--PYTIRL 456 Query: 115 DCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV----NGE 170 ++L+++G + AS+ G +AL A + +VA V++G++ Sbjct: 457 VSEILESNGSSSMASVCGGALALRAA-----------GVDTQKLVAGVAMGLIFEGDKHA 505 Query: 171 AVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 + D+ +ED + D V + DG I +Q + + E L L A+ + Sbjct: 506 VLTDIMGLEDHDGDMDFKVAGSSDG-ITALQMDIKLGGISLEVLKEALYQAKRGREHI 562 Score = 80.4 bits (197), Expect = 5e-14, Method: Composition-based stats. Identities = 38/182 (20%), Positives = 65/182 (35%), Gaps = 20/182 (10%) Query: 20 YTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTHTRNAREAA 79 K A G+V++ +T VL T + ++ + +T +Y + Sbjct: 19 VAKQAAGAVMLRVKNTVVLATVARDDVQVE----EDFLPLTVQYIEKAYAAGRIPGGYVK 74 Query: 80 KG-KQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTR--TASITGACVA 136 + K G R+I R+LR I + VL AD + A VA Sbjct: 75 RETKPGDFETLTARIIDRSLRPLFPKGYAYPTQIVV--MVLSADPEVDLQVVGLNAASVA 132 Query: 137 LVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNVVMTEDGR 196 L L P+ V V VG ++ + V + E ++ D+ V T+D Sbjct: 133 L-----------YLSDIPVNRPVCGVRVGYIDDKFVINPSNSELKSSALDLYVAGTKDEL 181 Query: 197 II 198 ++ Sbjct: 182 LM 183 >UniRef50_B8C7U5 Putative uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana CCMP1335 RepID=B8C7U5_THAPS Length = 659 Score = 181 bits (459), Expect = 2e-44, Method: Composition-based stats. Identities = 59/234 (25%), Positives = 97/234 (41%), Gaps = 22/234 (9%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKH-AEGSVLVEFGDTKVLCTASI---EEGVPRFLKGQGQ 56 +R GR N VRP++ T GS G+T+V+CTASI +GVP Sbjct: 267 LRADGRGTNAVRPISATTPIFPDCVHGSSQFSRGETQVICTASIGAPSDGVPHASPYSDS 326 Query: 57 GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 Y ST T ++ + R + L +A+ + + + L C Sbjct: 327 SAF-LHYDFPDFSTGTVKSKGESSA--NRRAIGHGNLAEKAVLPVLPNIHDFPYAVRLTC 383 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNG--EAVCD 174 +V ++G + A+ G+ +AL+DA P+ VA VSVG+ + D Sbjct: 384 EVTSSNGSSSMAAACGSTLALLDA-----------GVPLVSPVAGVSVGLTPDSKTLLLD 432 Query: 175 LEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 + ED + D V T G ++ +Q + P T + + L+LA+ N + Sbjct: 433 ITGTEDHYGDMDFKVCGT-SGGVLSMQLDVKN-PVTMKVIASALSLAKDGRNAI 484 Score = 47.6 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 53/158 (33%), Gaps = 28/158 (17%) Query: 74 NAREAAKGKQGGRTMEIQRLIARALRAAVDLKALG-------EFTITLDCDVLQADGGTR 126 R G R + R+I R +R + + I ++C+V D +R Sbjct: 21 RRRRDNSGPLTDREVLASRVIDRTIRPWLMMGLASSDKAISLPGNIVVNCEVQSYD--SR 78 Query: 127 TASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETD 186 +SI G K P+K +G V D E A+ + Sbjct: 79 ASSING----------------KKFPVPLKAAACVKLAIQRDGSVVYDPSPNESEDAKFE 122 Query: 187 MNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGE 224 + T+D R++ ++ E + + L LA+ Sbjct: 123 LLYAGTKD-RVLMLE--FEDPGVSETTVANALMLAQEA 157 >UniRef50_Q8TGX5 Probable exosome complex exonuclease 2 n=8 Tax=Archaea RepID=ECX2_METAC Length = 266 Score = 181 bits (459), Expect = 2e-44, Method: Composition-based stats. Identities = 61/237 (25%), Positives = 100/237 (42%), Gaps = 17/237 (7%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR R + L N AEGS V G+T+VL ++ G P F Q +G I Sbjct: 25 RQDGRGFKDFRDLKLETNVIVKAEGSAKVTLGNTQVLVGVKLQTGTP-FPDSQDEGVIIT 83 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRA--AVDLKALG------EFTIT 113 + P ++ G +E+ R++ R +R A+D+K L + + Sbjct: 84 NLELNPIASPEFEP-----GPPREEAIEMARVVDRGIRESGAIDIKKLCITVGESVWIVF 138 Query: 114 LDCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNP--MKGMVAAVSVGIVNGEA 171 +D VL DG AS A AL+ + + G + P MK M +++ + + Sbjct: 139 IDVHVLNDDGNIIDASCLAAIAALMTTMVPNEQQGLGEDVPLAMKEMPVGITIAKIGSKL 198 Query: 172 VCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 + D E++ ET + +V + DG + +Q P T EL + LA ++ L Sbjct: 199 MVDPSLDEEAVCETKLTIVSSSDGSVAGMQKMGI-SPLTEAELFEAIDLALEKAAEL 254 >UniRef50_A5URV5 Polyribonucleotide nucleotidyltransferase n=11 Tax=Bacteria RepID=PNP_ROSS1 Length = 747 Score = 181 bits (459), Expect = 2e-44, Method: Composition-based stats. Identities = 58/233 (24%), Positives = 95/233 (40%), Gaps = 25/233 (10%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQG 57 R GR +RP+++ GS L G T+VL A++ EE L + Sbjct: 321 RVDGRGPKDIRPISIEVGLIPRVHGSGLFTRGQTQVLTLATLGSPAEEQRLDDLGIETTK 380 Query: 58 WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCD 117 Y P ST G R + L R+L A + K +T+ L + Sbjct: 381 RYIHHYNFPPFSTGEVRRL----GSPRRRDIGHGALAERSLLAVLPSKEEFPYTMRLVSE 436 Query: 118 VLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGE-----AV 172 L ++G + AS+ G+ +AL+DA P+K VA V++G++ G+ + Sbjct: 437 TLSSNGSSSMASVCGSSLALMDA-----------GVPIKAPVAGVAMGLITGKDGRWRVL 485 Query: 173 CDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 D++ +ED + D V T G + +Q + T+E + A AR Sbjct: 486 TDIQGIEDHLGDMDFKVAGTAKG-VTGLQLDIKTTGITYEIMREAFAQAREGR 537 Score = 74.6 bits (182), Expect = 3e-12, Method: Composition-based stats. Identities = 45/199 (22%), Positives = 75/199 (37%), Gaps = 17/199 (8%) Query: 12 RPVTLTRN-YTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRST 70 R +TL + + A G+V+V +GDT +L TA + +T +Y + Sbjct: 16 RTLTLEAGRFAEQANGAVVVRYGDTMLLATAVASKEP---RADADFFPLTVDYEEKMYAA 72 Query: 71 HTRNAREAAK-GKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTAS 129 + GK + RL R LR E I + + + Sbjct: 73 GKIPGSFFKREGKPTDSAILTARLTDRPLRPLFPEGYRNEVQIIVTTFSIDMVNDPAPLA 132 Query: 130 ITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNV 189 I GA AL + P G V AV VG ++G+ + E + ++ D+ V Sbjct: 133 IIGASAALA-----------ISDIPFLGPVGAVQVGYIDGKVQINPEMPDMPNSDLDLVV 181 Query: 190 VMTEDGRIIEVQGTAEGEP 208 T+D ++ V+ A+ P Sbjct: 182 AGTKD-AVLMVEAGAKELP 199 >UniRef50_D2EG59 3' exoribonuclease n=1 Tax=Candidatus Parvarchaeum acidiphilum ARMAN-4 RepID=D2EG59_9EURY Length = 235 Score = 180 bits (457), Expect = 4e-44, Method: Composition-based stats. Identities = 62/232 (26%), Positives = 104/232 (44%), Gaps = 24/232 (10%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGV-PRFLKGQGQGWIT 60 R R +++RP+ +A+GS + G+T+ + E V PR ++ +G I Sbjct: 5 RFDKRKFDELRPMEAETGIIPNAKGSARFKIGNTEAIAAVYGPEEVKPRHIEKVNKGIIV 64 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 +Y MLP S R A+ R +EI ++I AL AV L+ + + + + Q Sbjct: 65 CKYDMLPFSVPDR-----ARPGMDRRDIEISQVITNALNRAVILEEMPRAMVNVRIYITQ 119 Query: 121 ADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVED 180 AD GTR AS+T A +A DA PM+ +VAAV+ G + DL E+ Sbjct: 120 ADAGTRCASLTAASMACADA-----------GLPMRDLVAAVAAGKIGDSICLDLTKEEE 168 Query: 181 SA---AETDMNVV-MTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 TD+ + + I+ +Q + T EEL ++ + + + + Sbjct: 169 DFHEGGATDVPIALLPSKNEIVLLQLDGK---VTREELKKVIEMGKKGAMEI 217 >UniRef50_Q8TCS8 Polyribonucleotide nucleotidyltransferase 1, mitochondrial n=56 Tax=cellular organisms RepID=PNPT1_HUMAN Length = 783 Score = 179 bits (455), Expect = 5e-44, Method: Composition-based stats. Identities = 51/246 (20%), Positives = 90/246 (36%), Gaps = 37/246 (15%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIE--------EGVPRFLKG 53 R GR +R V+ + K GS L + G T+VLCT + + + V + G Sbjct: 358 RCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESGIKSDQVITAING 417 Query: 54 QGQGWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTIT 113 Y P +T+ R + L +AL + FTI Sbjct: 418 IKDKNFMLHYEFPPYATNEIGKVTG----LNRRELGHGALAEKALYPVIP--RDFPFTIR 471 Query: 114 LDCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV------ 167 + +VL+++G + AS G +AL+D P+ VA V++G+V Sbjct: 472 VTSEVLESNGSSSMASACGGSLALMD-----------SGVPISSAVAGVAIGLVTKTDPE 520 Query: 168 -----NGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALAR 222 + + D+ +ED + D + T G I +Q + + ++ + A Sbjct: 521 KGEIEDYRLLTDILGIEDYNGDMDFKIAGTNKG-ITALQADIKLPGIPIKIVMEAIQQAS 579 Query: 223 GESNPL 228 + Sbjct: 580 VAKKEI 585 Score = 91.9 bits (227), Expect = 2e-17, Method: Composition-based stats. Identities = 48/200 (24%), Positives = 85/200 (42%), Gaps = 23/200 (11%) Query: 12 RPVTLTRN-YTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRST 70 R + ++ + A+GS +V+ GDT V+ TA + + P + + +Y + Sbjct: 54 RKLEISSGKLARFADGSAVVQSGDTAVMVTA-VSKTKPSPSQFM---PLVVDYRQKAAAA 109 Query: 71 HTRNAREAAKGKQGGRTMEI--QRLIARALRAAVDLKALGEFTITLDCDVLQADG--GTR 126 R + + G EI R+I R++R + + C++L DG Sbjct: 110 G-RIPTNYLRREIGTSDKEILTSRIIDRSIRPLFPAGYFYDTQ--VLCNLLAVDGVNEPD 166 Query: 127 TASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETD 186 +I GA VAL L P G V AV +GI++GE V + E S++ + Sbjct: 167 VLAINGASVAL-----------SLSDIPWNGPVGAVRIGIIDGEYVVNPTRKEMSSSTLN 215 Query: 187 MNVVMTEDGRIIEVQGTAEG 206 + V +I+ ++ +AE Sbjct: 216 LVVAGAPKSQIVMLEASAEN 235 >UniRef50_Q7VIL0 Polyribonucleotide nucleotidyltransferase n=2 Tax=Helicobacter RepID=PNP_HELHP Length = 709 Score = 178 bits (452), Expect = 1e-43, Method: Composition-based stats. Identities = 55/238 (23%), Positives = 92/238 (38%), Gaps = 29/238 (12%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEG------VPRFLKGQ 54 +R GR VRP+++ N A GSVL G T+ L +A+I K Sbjct: 320 IRADGRGLKDVRPISIQTNILPFAHGSVLFTRGQTQALVSATIGGDNDAQNYEMLGSKNA 379 Query: 55 GQGWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITL 114 + Y S + G G R + L RAL ++V + TI L Sbjct: 380 LKKRFLFHYNFPSFSVGE----ASMIGSVGRRELGHGNLAKRALHSSVQEQDK---TIRL 432 Query: 115 DCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGE---- 170 ++L+++G + AS+ G +AL ++ ++A V++G+V + Sbjct: 433 VSEILESNGSSSMASVCGGSLAL-----------CACGIKVESLIAGVAMGLVTQDEQCA 481 Query: 171 AVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 + D+ +ED + D V G I +Q + T E L L A+ + Sbjct: 482 ILTDISGLEDHDGDMDFKVAGGYKG-ISAMQMDIKLGGITQEILCQALFQAKEAREQI 538 Score = 58.4 bits (140), Expect = 2e-07, Method: Composition-based stats. Identities = 37/214 (17%), Positives = 79/214 (36%), Gaps = 25/214 (11%) Query: 20 YTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTHTRNAREAA 79 + A G +L + G + +L + +E ++ +Y + + + Sbjct: 20 VAQAANGGILYQNGGSVLLASVCTQE---NEKYDDEFLPLSVQYIEKTYANNKFPSGFIK 76 Query: 80 K-GKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTASITGACVALV 138 + GK + RLI R LR + ++ VL DG + + Sbjct: 77 REGKPSEFEILTSRLIDRTLRPLFPKGYT--YITSIVVMVLSYDGKSDLQ---------L 125 Query: 139 DALQKLVENGKLKTNPMKGM----VAAVSVGIVNGEAVCDLEYVEDSAAETDMNVVMTED 194 +AL + P++ + V+ V +G +G + + + S +E ++ V +D Sbjct: 126 NALNAAACALYVSDLPLESLQDKAVSGVRIGRKDGHFIINPTMEQLSESELNLFVSGRDD 185 Query: 195 GRIIEVQG----TAEGE-PFTHEELLILLALARG 223 ++ ++ TA+G + E L L A+ Sbjct: 186 -ELLMIEMKSIRTAQGANELSEENFLEALECAKN 218 >UniRef50_C7DI01 3' exoribonuclease n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DI01_9EURY Length = 246 Score = 178 bits (452), Expect = 1e-43, Method: Composition-based stats. Identities = 56/221 (25%), Positives = 93/221 (42%), Gaps = 20/221 (9%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTAS-IEEGVPRFLKGQGQGWIT 60 R GR N++RP+ + +A GS +E+G+ KVL +E PR L + I Sbjct: 16 RLDGRDFNELRPLKIEAGILANANGSAYLEWGNNKVLAAVYGPKEATPRHLADTNKAIIK 75 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 Y M P S+ + R R +EI ++ V L+ I + ++LQ Sbjct: 76 CRYSMAPFSSMGDHGRSG----PNRRAIEISKVTKEVFENVVMLEEFPGSEIEIFIEILQ 131 Query: 121 ADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVED 180 +DGGTR + +K MV AVS G ++ V D+ +ED Sbjct: 132 SDGGTRA-----------AGITAAAVALANAGIHVKDMVYAVSAGRIDEHVVIDVNMIED 180 Query: 181 SAAETDMNV-VMTEDGRIIEVQGTAEGEPFTHEELLILLAL 220 + ++ DM V + +D ++ +Q FT E+ + + Sbjct: 181 NYSDADMPVSISPKDNSVLLLQMDG---GFTKEQFGEAMKM 218 >UniRef50_C5A2B8 Probable exosome complex exonuclease 2 n=20 Tax=Euryarchaeota RepID=ECX2_THEGJ Length = 273 Score = 177 bits (450), Expect = 2e-43, Method: Composition-based stats. Identities = 58/245 (23%), Positives = 104/245 (42%), Gaps = 25/245 (10%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GRS + R + + + + AEGS V G T+VL ++ G P F +G +T Sbjct: 24 RIDGRSFEEYRDIEIKTGFIEKAEGSAWVRLGGTRVLVGIKVDVGEP-FPDLPDRGVMTT 82 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRA--AVDLKALG------EFTIT 113 ++P ++ T G R +E+ R+I R +R AV+L+ L + Sbjct: 83 NVELVPLASPTFEP-----GPPDERAIELARVIDRGIRESQAVELEKLVIVPGKLVRVVF 137 Query: 114 LDCDVLQADGGTRTASITGACVALVDALQK----------LVENGKLKTNPMKGMVAAVS 163 +D VL DG A+ A AL+ +++ + + P+K + V+ Sbjct: 138 IDVHVLDHDGNLFDATGLAAMAALMTTKIPKVEYNEETGEIIKLDEYEPLPVKHVPIPVT 197 Query: 164 VGIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARG 223 + + D E++ ++ + + E G I VQ EG F EE++ + A Sbjct: 198 FAKIGSSIIVDPNLDEETVMDSRLTITTDETGHISAVQK-GEGGSFKLEEVMYAIDTALK 256 Query: 224 ESNPL 228 +++ L Sbjct: 257 KADEL 261 >UniRef50_A6DU91 Polynucleotide phosphorylase/polyadenylase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DU91_9BACT Length = 696 Score = 177 bits (448), Expect = 3e-43, Method: Composition-based stats. Identities = 54/225 (24%), Positives = 88/225 (39%), Gaps = 26/225 (11%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGV----PRFLKGQGQG 57 R GR +RP++ + GS L G+T+ L T ++ + ++G+ Sbjct: 315 RADGRGAEDLRPLSAENSLMPRTHGSALFARGETQALVTVTLGDAKAAQSAETIRGRYDK 374 Query: 58 WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCD 117 Y S A G R + L RAL A + A +T+ + + Sbjct: 375 TFYLHYNFPNFSVGECGRIMGA----GNREIGHGNLAERAL--AKMMPADYPYTVRVISE 428 Query: 118 VLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV----NGEAVC 173 V+ ++G T ASI G +AL+DA P+K VA +SVG+V + Sbjct: 429 VMGSNGSTSMASICGGSLALMDA-----------GVPLKKAVAGISVGLVQEADKYVMIT 477 Query: 174 DLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILL 218 D+ ED + D V T DG I Q + + + + + Sbjct: 478 DILGSEDHYGDMDFKVAGTRDG-ITAFQLDLKIAGVSLDMMYEAM 521 Score = 74.6 bits (182), Expect = 3e-12, Method: Composition-based stats. Identities = 45/215 (20%), Positives = 74/215 (34%), Gaps = 20/215 (9%) Query: 12 RPVTLTRNYTKH-AEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRST 70 RP+T+ A +V V G+T VL TA PR G + Y + Sbjct: 15 RPITIETGKMALLANAAVTVTQGETVVLVTA--CSSAPRA--GIDFFPLMVAYREKYSAA 70 Query: 71 HTRNAREAAK-GKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTAS 129 + + + R+ R LR E I T + Sbjct: 71 GKFLGGFMKRENRPSEHEILTSRMTDRPLRPLFPKGFYHEVQIQAIVLSYDKVNDPDTLA 130 Query: 130 ITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNV 189 + G+ AL+ L P +G + A+ VG V+GE V + + A+ ++ Sbjct: 131 MLGSSAALM-----------LSDLPFQGPLGALRVGQVDGEFVANPTTEQMEASALELIY 179 Query: 190 VMTEDGRIIEVQGTAEGEPFTHEELLILLALARGE 224 T G+ I ++G + + E L L A + Sbjct: 180 SGTP-GKTIMIEGDCDE--LSEERLFEALKYADSK 211 >UniRef50_C1E1G7 Predicted protein n=2 Tax=Micromonas RepID=C1E1G7_9CHLO Length = 838 Score = 177 bits (448), Expect = 4e-43, Method: Composition-based stats. Identities = 52/234 (22%), Positives = 85/234 (36%), Gaps = 28/234 (11%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQ 56 +R GR VRP+T + GS L G+T+ + A++ + L Sbjct: 407 VRQDGRDTKTVRPITCSGGLLPRTHGSSLFTRGETQAIAAATLGGATDAQKVDGLGNDKD 466 Query: 57 GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 Y P S G R + L RAL + FT+ L+ Sbjct: 467 RRFYLHYFFPPSSVGE----TGRVGAASRREVGHGNLAERALMPVIPPYDDFPFTVRLES 522 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGE------ 170 + +++G + A++ +AL DA P+ VA +++G++ G+ Sbjct: 523 TITESNGSSSMATVCAGSLALQDA-----------GVPITRKVAGIAMGLILGDESAGEA 571 Query: 171 --AVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALAR 222 + D+ ED+ + D V DG I Q + E T L L AR Sbjct: 572 PVILTDILGSEDALGDMDFKVAGDGDG-ISAFQMDIKVEGITLAVLREALESAR 624 Score = 64.6 bits (156), Expect = 2e-09, Method: Composition-based stats. Identities = 49/212 (23%), Positives = 81/212 (38%), Gaps = 23/212 (10%) Query: 13 PVTLTRNYT-KHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTH 71 VT+ + A G+V+V G+T + T V G +T Y S Sbjct: 62 EVTVETGRIGRQANGAVMVTEGETVIYATICAGRDV---TADGGFVPLTVNYQ-ERYSAV 117 Query: 72 TRNAREAAKGKQGGRTME--IQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTAS 129 R A K G R E I RL+ R LR + + I VL DG T + Sbjct: 118 GRTAGGYRKRDGGVRENETLIGRLVDRPLRPMIPKGWAYDTQIL--EWVLSYDGARSTDA 175 Query: 130 ITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNG--EAVCDLEYVEDSAAETDM 187 + A+ + P+K +A V VG++ G E + + + + D+ Sbjct: 176 L---------AITAASCAAAISDVPLKKPIAGVRVGLLPGETEPLINPTCEQMERSRLDL 226 Query: 188 NVVMTEDGRIIEVQGTAEGEPFTHEELLILLA 219 + TED ++ ++G + T +E+L + Sbjct: 227 VLAGTED-AVMMIEGFGDF--LTTQEMLYAIE 255 >UniRef50_A8Z660 Polyribonucleotide nucleotidyltransferase n=4 Tax=Flavobacteriales RepID=PNP_SULMW Length = 728 Score = 175 bits (445), Expect = 7e-43, Method: Composition-based stats. Identities = 46/234 (19%), Positives = 89/234 (38%), Gaps = 30/234 (12%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTAS----IEEGVPRFLKGQGQ 56 +R GRS + +R + + GS + G+T+ L T + ++ + + Sbjct: 339 IRLDGRSLDDIRNICSQVDCLPGVHGSAIFTRGETQALSTVTLGSSLDVNKIDNAIMRAK 398 Query: 57 GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 Y P ST + R + L RAL+ + +TI + Sbjct: 399 QRFYLHYNFPPFSTGEIKLLKG----VSRREIGHGNLAQRALKNIIPTT----YTIRVVS 450 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGE------ 170 DVL+++G + A++ + +AL+D +K V+ +S+G++ Sbjct: 451 DVLESNGSSSMATVCASTLALMD-----------SGIIVKRPVSGISMGLIMNYLTGEAI 499 Query: 171 AVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGE 224 + DL ED + D + TE G + Q + T++ L + A+ Sbjct: 500 ILSDLLGDEDYIGDMDFKITGTEYG-MTACQMDIKISGITYDVLSYTIFKAKKG 552 Score = 67.7 bits (164), Expect = 3e-10, Method: Composition-based stats. Identities = 39/228 (17%), Positives = 74/228 (32%), Gaps = 33/228 (14%) Query: 4 AGRSNNQVRPVTLTRN-YTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAE 62 GR+ +++ + A GS +V G+T +L T I + K +T + Sbjct: 14 DGRA------LSIETGELARKANGSAVVRMGNTSLLATVVISKESKEDFKFI---PLTID 64 Query: 63 YGMLPRSTHTRNAREAAK--GKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 Y S + K G+ + RL+ R LR E I + Sbjct: 65 YR-EKYSAGGKIPGGYIKREGRPYDEEILTMRLVDRLLRPLFKDNYYNEIQIMISLLSYD 123 Query: 121 ADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVED 180 + + A A+ + +G V+ V + +N + + E Sbjct: 124 INVLPDGLAGLVASTAV-----------SISEISFQGPVSTVRIIRINDAFIINPGIEEI 172 Query: 181 SAAE-------TDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALA 221 ++ +V + II V+G E + E++ + A Sbjct: 173 KKSDFYLDLDLDLDLIVGGTNNYIILVEG--EMREISEIEMMEAIVKA 218 >UniRef50_A7RP27 Predicted protein (Fragment) n=1 Tax=Nematostella vectensis RepID=A7RP27_NEMVE Length = 710 Score = 174 bits (442), Expect = 2e-42, Method: Composition-based stats. Identities = 52/239 (21%), Positives = 90/239 (37%), Gaps = 39/239 (16%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI--------EEGVPRFLKG 53 R GR +++R + N K GS L + G+T+V TA+ + + + G Sbjct: 305 RCDGRQFDELRSIDCDINLYKTLHGSSLFKRGETQVFSTATFGSVGSAAKVDTISEAVGG 364 Query: 54 QGQGWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTIT 113 + Y P ST+ R +G R + L RAL + + FT+ Sbjct: 365 SKEKQFMLHYEFPPFSTNEVKQR---RGSFDRREIGHGALAERALVPVLPDEL--PFTLR 419 Query: 114 LDCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV------ 167 L +VL ++G + AS +A++DA P+K VA + G+V Sbjct: 420 LTAEVLGSNGSSSLASACAGSLAMMDA-----------GVPIKSHVAGSACGLVTSSDAE 468 Query: 168 --------NGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILL 218 N + + D+ +ED + D + T G I +Q + + + Sbjct: 469 DASKRDIDNYQLLTDILGIEDYLGDMDFKIAGTRQG-ITALQADFKVPGLPVAIVEEAI 526 Score = 71.9 bits (175), Expect = 1e-11, Method: Composition-based stats. Identities = 50/226 (22%), Positives = 92/226 (40%), Gaps = 34/226 (15%) Query: 12 RPVTLTRNYTKH-AEGSVLVEFGDTKVLCTA------SIEEGVPRFLKGQGQGWITAEYG 64 R + + A+GS + ++ DT VL TA S +P + + + Sbjct: 2 RQLKFSTGKLALLADGSTVTQYEDTSVLVTAISSKKPSENSFLPLVVDYKEKASAAC--- 58 Query: 65 MLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQAD-- 122 ++P + R+ R + + R I R++R+ + I +L AD Sbjct: 59 LIPTTFLRRDLLA------NEREILVCRRIDRSVRSLFMKGYTYDTQII--SHLLAADRF 110 Query: 123 GGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSA 182 ++ GA +L L + P +G V AV +G V+G+ V + + Sbjct: 111 NNPDVVAVNGASASLA-----------LSSIPWRGPVGAVRIGDVDGQLVVNPLRQQLEH 159 Query: 183 AETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 ++ D+ V +E +I+ V+G A+ P E L + LA E+ P+ Sbjct: 160 SQLDLVVTSSES-KIVMVEGFAKEVP--DERLCEAIKLAFSEAQPI 202 >UniRef50_Q9NPD3 Exosome complex exonuclease RRP41 n=11 Tax=Coelomata RepID=EXOS4_HUMAN Length = 245 Score = 174 bits (441), Expect = 2e-42, Method: Composition-based stats. Identities = 57/230 (24%), Positives = 94/230 (40%), Gaps = 18/230 (7%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVP--RFLKGQGQGWI 59 R GR ++R + A+GS +E G+TK L + R + + Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 72 Query: 60 TAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVL 119 +Y ST R R ++ E+ + + AA+ + I + VL Sbjct: 73 NCQYSSATFSTGERKRRPHG----DRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVL 128 Query: 120 QADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVE 179 QADGGT A + A +A++DA PM+ V A S G V+G A+ DL +VE Sbjct: 129 QADGGTYAACVNAATLAVLDA-----------GIPMRDFVCACSAGFVDGTALADLSHVE 177 Query: 180 DSAAETDMNVV-MTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 ++A + + + G+I ++ A E +L A A + + L Sbjct: 178 EAAGGPQLALALLPASGQIALLEMDARLHEDHLERVLEAAAQAARDVHTL 227 >UniRef50_B5S2C1 Polyribonucleotide nucleotidyltransferase protein n=5 Tax=Proteobacteria RepID=B5S2C1_RALSO Length = 752 Score = 173 bits (440), Expect = 3e-42, Method: Composition-based stats. Identities = 57/264 (21%), Positives = 94/264 (35%), Gaps = 56/264 (21%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQG 57 R GR VRP+ + + A GS L G+T+ L A++ +E + L+G+ + Sbjct: 315 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALQGEYRD 374 Query: 58 WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCD 117 Y M P +T G R + RL RAL + +TI L + Sbjct: 375 RFMLHYNMPPFATGE----TGRVGSPKRREIGHGRLAKRALIPVLPKDDEFAYTIRLVSE 430 Query: 118 VLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV---------- 167 + +++G + AS+ G C+AL+DA P+K VA V++G++ Sbjct: 431 ITESNGSSSMASVCGGCLALMDA-----------GVPVKAHVAGVAMGLILXXXXXXXXX 479 Query: 168 --------------------------NGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQ 201 + D V T D I +Q Sbjct: 480 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDMDFKVAGT-DNCITALQ 538 Query: 202 GTAEGEPFTHEELLILLALARGES 225 + + T E + + LA A+ Sbjct: 539 MDIKVQGITKEIMQVALAQAKEGR 562 Score = 77.7 bits (190), Expect = 3e-13, Method: Composition-based stats. Identities = 50/228 (21%), Positives = 79/228 (34%), Gaps = 28/228 (12%) Query: 14 VTLTRN-YTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTHT 72 V + + A G+VL++ DT VL T G GQ +T +Y + Sbjct: 16 VRMETGEIARQASGAVLLDMDDTVVLATV---VGAKNPKPGQDFFPLTVDYIEKTYAAGK 72 Query: 73 RNAREAAK-GKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTASIT 131 + G+ RLI R LR E + + VL SI Sbjct: 73 IPGGFFKREGRPSENETLTSRLIDRPLRPLFPEGFYNE--VQVVVHVL---------SIN 121 Query: 132 GACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNVVM 191 A + AL + P G V A VG +G+ + + + + ++ D+ V Sbjct: 122 PEVPADIPALVAASAALAVSGLPFNGPVGAARVGYKDGQYLLNPNRAQLAHSDLDLVVAG 181 Query: 192 TEDGRII---EVQGTAEGEPF-----THEELLILL----ALARGESNP 227 TE ++ E Q +E HE++ I + L R P Sbjct: 182 TERAVLMVESEAQQLSEEVMLGAVVYGHEQMQIAINAIHDLVREGGKP 229 >UniRef50_Q30TH2 Polyribonucleotide nucleotidyltransferase n=19 Tax=Epsilonproteobacteria RepID=PNP_SULDN Length = 721 Score = 173 bits (439), Expect = 3e-42, Method: Composition-based stats. Identities = 48/235 (20%), Positives = 91/235 (38%), Gaps = 29/235 (12%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFL------KGQ 54 +R GR+ N++RP++++ N A S L G T+ L ++ + +G Sbjct: 340 VRADGRALNEIRPISISTNVLPSAHASCLFTRGQTQALVVLTMGGPKDAQMFENLTDEGT 399 Query: 55 GQGWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITL 114 Y S + K R + L RAL V+L+ T+ L Sbjct: 400 QNENFMVHYNFPGFSVGEASPIMGTK----RRELGHGNLAKRALEPIVNLEGQ---TVRL 452 Query: 115 DCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVN----GE 170 ++L+++G + A++ G +AL A +A +++G+V+ Sbjct: 453 VSEILESNGSSSMATVCGGYMALRAA-----------DIETSDTIAGIAMGMVSEGDKYA 501 Query: 171 AVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 + D+ +ED + D V ++DG I +Q + + L L A+ Sbjct: 502 ILSDIMGLEDHDGDLDFKVTGSKDG-ITAMQMDIKLGGISLNILKEALYQAKEGR 555 Score = 70.7 bits (172), Expect = 3e-11, Method: Composition-based stats. Identities = 30/189 (15%), Positives = 67/189 (35%), Gaps = 16/189 (8%) Query: 20 YTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTHTRNAREAA 79 K A G+ ++ G+T +L T I+E + +T +Y + Sbjct: 21 VAKQANGAAWLKSGNTVILATVVIDETE---IVKDDFLPLTVQYIEKAYAAGKIPGGFFK 77 Query: 80 KG-KQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTASITGACVALV 138 + K R++ R+LR IT+ + + + V Sbjct: 78 RETKASDFETLTSRIVDRSLRPLFPKGFGHPTQITIMVFSVDKESDLQ-----------V 126 Query: 139 DALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRII 198 AL + + V+A+ V ++GE + + E + D+ + T++ ++ Sbjct: 127 LALNAASAALYVSDIDINKSVSAIRVAKIDGELILNPTLSELDKSTLDLYLSGTKE-DLL 185 Query: 199 EVQGTAEGE 207 ++ ++G Sbjct: 186 MIEMRSKGG 194 >UniRef50_A7RQ94 Predicted protein n=3 Tax=Eumetazoa RepID=A7RQ94_NEMVE Length = 268 Score = 173 bits (439), Expect = 4e-42, Method: Composition-based stats. Identities = 51/224 (22%), Positives = 86/224 (38%), Gaps = 16/224 (7%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR +++RP+ L A+GS +E +TKV+C PR + +G +T Sbjct: 36 RQDGRRPDELRPMFLRAGVVSQAKGSAYIEMKNTKVICAIYGPREAPRRQEFSMKGRLTC 95 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQA 121 E+ P S R K Q E L+ +AL AV L+ + + + VL+ Sbjct: 96 EFKFAPFSCIYRR-----KHIQDAEEKENSYLVVQALEPAVCLEKFPKAQVDIYITVLEN 150 Query: 122 DGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDS 181 DG +A I A VAL A M +V+A ++ + + D E Sbjct: 151 DGSALSAGIICASVALAMA-----------GIEMLDLVSACTMVQSDNHILMDPCEKEIH 199 Query: 182 AAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 ++ + ++ + V G + T + L+ Sbjct: 200 SSSASGHTMVAILPSLNVVSGLVQEGELTQDAATKALSSCIEGC 243 >UniRef50_C4LJ74 Polyribonucleotide nucleotidyltransferase n=28 Tax=Corynebacterineae RepID=PNP_CORK4 Length = 775 Score = 173 bits (438), Expect = 4e-42, Method: Composition-based stats. Identities = 53/240 (22%), Positives = 92/240 (38%), Gaps = 28/240 (11%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIE----EGVPRFLKGQGQ 56 R GR +R + + + A GS L + G+T++L +++ E L Sbjct: 391 FRIDGRGVEDIRDLDVEVDLVPRAHGSSLFQRGETQILGVTTLDTLKMEQQVDSLGPVDH 450 Query: 57 GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 Y P ST G R + L RAL+ + + +TI Sbjct: 451 RRYIHHYNFPPYSTGE----TGRVGSPKRREIGHGALAERALKPMIPSRDDFPYTIRQVS 506 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEA----- 171 + L ++G T S+ + ++L +A P+K VA +++G+V+GE Sbjct: 507 EALGSNGSTSMGSVCASTLSLYNA-----------GVPLKAPVAGIAMGLVSGEVKGKMT 555 Query: 172 ---VCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 + D+ ED+ + D V TED I +Q + + + L L AR + Sbjct: 556 YVTLTDILGAEDAFGDMDFKVAGTED-FITALQLDTKLDGIPSDVLAGALKQAREARLEI 614 Score = 45.3 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 38/193 (19%), Positives = 61/193 (31%), Gaps = 29/193 (15%) Query: 12 RPVTLTRN-YTKHAEGSVLVEFGD-TKVLCTAS----IEEGVPRFLKGQGQGWITAEYGM 65 R + L + A GSV+ + T +L T + EG F G Sbjct: 45 RTIRLETGQLARQANGSVVAYLDEDTMMLSTTTASSKPREGFDFFPLTVDVEERMYAAGR 104 Query: 66 LPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGT 125 +P S R G+ G + RLI R LR E + + L Sbjct: 105 IPGSFFRRE------GRPGTDAILACRLIDRPLRPTFVKGLRNEVQVIVTVMSLDPKDMY 158 Query: 126 RTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV------NGEAVCDLEYVE 179 +I A + +L P+ G V V + ++ +G+ V + Sbjct: 159 DVVAINAASAS-----------TQLSGLPVSGPVGGVRMALIVDDDHEDGQWVAFPTREQ 207 Query: 180 DSAAETDMNVVMT 192 +A +M V Sbjct: 208 HESALFEMVVAGR 220 >UniRef50_B9XS52 Polyribonucleotide nucleotidyltransferase (Fragment) n=1 Tax=bacterium Ellin514 RepID=B9XS52_9BACT Length = 664 Score = 173 bits (438), Expect = 4e-42, Method: Composition-based stats. Identities = 49/239 (20%), Positives = 85/239 (35%), Gaps = 32/239 (13%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGV-----PRFLKGQGQ 56 R GR + +R + A GS L G+T+ + A++ G + G + Sbjct: 217 RMDGRPLDGIRAIHSEAGILPRAHGSALFSRGETQTVALATLGTGEDAQEFDSYTGGSNE 276 Query: 57 GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 Y S G R + L R++ + L + I + Sbjct: 277 KKFILHYNFPNYSVGETGRISG----PGRREIGHGALAERSIEPMIPLDKYP-YAIRVTS 331 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVN-------- 168 ++++++G T AS+ G +AL+DA PM VA +S+G+ Sbjct: 332 EIMESNGSTSMASVCGGTLALMDA-----------GVPMIRPVAGISIGMCTEHDAVDKI 380 Query: 169 --GEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 + + D+ ED + D + TE G I Q + H+ + L AR Sbjct: 381 SAYKLLSDIIGAEDGFGDMDCKIAGTEKG-ITGFQLDLKLRGIPHDMMAETLEKARVAR 438 >UniRef50_Q6L224 Ribonuclease PH n=2 Tax=Thermoplasmatales RepID=Q6L224_PICTO Length = 260 Score = 173 bits (438), Expect = 5e-42, Method: Composition-based stats. Identities = 64/236 (27%), Positives = 99/236 (41%), Gaps = 16/236 (6%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR N R + + NY A GS +VE G TKV+ IEEG P F QG + Sbjct: 26 RLDGRGLNDFRDIKIFENYIPKASGSAMVELGRTKVVAGVKIEEGEP-FPDTPDQGVMAL 84 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAA--------VDLKALGEFTIT 113 MLP + T A G G +E R++ R +R + V + + Sbjct: 85 NIEMLPMAFPTFEA-----GPPGEEAIEYSRVVDRGIRESKMIDVTRLVIEPGTKVWMVF 139 Query: 114 LDCDVLQADGGTRTASITGACVALVDALQKLVE-NGKLKTNPMKGMVAAVSVGIVNGEAV 172 +D D++ G AS A AL +A+ G+ P+ +V++ + E V Sbjct: 140 IDIDIINYAGNIIDASTIAAVAALRNAIVPASRIGGEDFKLPVNANPVSVTMAKIGDELV 199 Query: 173 CDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 D + E+ + + + M ED I +Q GE FT E++ + +R N + Sbjct: 200 IDPDLEEEQVSNGRITITMAEDDHIHAIQKGDVGE-FTMEDIRKAIKASRDTGNRI 254 >UniRef50_A4RTW2 Predicted protein n=4 Tax=cellular organisms RepID=A4RTW2_OSTLU Length = 823 Score = 172 bits (436), Expect = 8e-42, Method: Composition-based stats. Identities = 47/239 (19%), Positives = 87/239 (36%), Gaps = 32/239 (13%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQG 57 R GR+ + +RP+ GS L G+T+ + A++ + ++ Sbjct: 378 RQDGRTTSMIRPIACEAGILPRTHGSSLFTRGETQAIGVATLGGSQDAQRQDDVEAGEDK 437 Query: 58 WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCD 117 Y P S G R + L RAL + + F L+ Sbjct: 438 RFMLHYFFPPSSVGE----TGRTGGASRREIGHGNLAERALMPILPSEEDFPFVCKLEST 493 Query: 118 VLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGE------- 170 + +++G + A++ +AL+DA P+K VA +++G++ G Sbjct: 494 ITESNGSSSMATVCAGTLALLDA-----------GVPIKRKVAGIAMGLILGSEAAGGGD 542 Query: 171 -----AVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGE 224 + D+ ED+ + D V +DG I Q + E T + + L A+ Sbjct: 543 ELEPIVLTDILGSEDALGDMDFKVAGDKDG-ITAFQMDIKVEGITIDVMKTALEEAQKG 600 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 42/234 (17%), Positives = 77/234 (32%), Gaps = 32/234 (13%) Query: 5 GRSNNQVRPVTLTRNYTK----------HAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQ 54 GR+ R + L ++ A G+V G+T + TA Sbjct: 62 GRAERDARELVLRIGESEVRLETGKIGLQANGAVFASEGETVLYNTACASREC---TGDG 118 Query: 55 GQGWITAEYGMLPRSTHTRNAREAAKGKQGGRTME--IQRLIARALRAAVDLKALGEFTI 112 +T Y S R + K G R E RL+ R +R + E + Sbjct: 119 SFVPLTVNYA-ERFSAAGRTSGGYKKRDGGLRENETLKARLVDRPIRPMMYKGWGYETQV 177 Query: 113 TLDCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNG--E 170 A+ T A+ + P+K V V VG++ G E Sbjct: 178 LQWLMSFDAERSTDAL-----------AITAASAALAVSDIPLKKPVVGVRVGLMPGSDE 226 Query: 171 AVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGE 224 V + + + D+ + T++ ++ ++G + T +E+L + + Sbjct: 227 PVVNPTSEQMKQSRLDLVLAGTDE-AVLMIEGFCDF--LTTDEMLRAIEKGQEA 277 >UniRef50_Q54EU6 Putative uncharacterized protein n=1 Tax=Dictyostelium discoideum RepID=Q54EU6_DICDI Length = 247 Score = 172 bits (435), Expect = 1e-41, Method: Composition-based stats. Identities = 54/230 (23%), Positives = 96/230 (41%), Gaps = 18/230 (7%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQ-GQGWI 59 +R GR N++R + + K A+GS E G+TK++ + KG + + Sbjct: 12 LRIDGRRANELRRINVEMGIFKRADGSAYYEQGNTKIIAAVYGPREISVSGKGVFDRAVV 71 Query: 60 TAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVL 119 E+ ST R ++ KG T EI L+ +A + + I + VL Sbjct: 72 KCEFSSSSFSTTERKPQQKTKG--DRVTTEIANLVKQAFESTIHTHLYPRSQINIYLQVL 129 Query: 120 QADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVE 179 Q+DGG + A+I + +AL+DA MK + A S ++G AV DL +E Sbjct: 130 QSDGGLKAAAINASTLALIDA-----------GISMKDFICACSTSCIDGIAVLDLNNIE 178 Query: 180 DSAAETDMNVVM-TEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 + + D + + + G +I + ++ + +L L + Sbjct: 179 ERSGGPDCLLSIQPQIGGVISLNMDSK---VPQDLFESVLELGEKGCKKI 225 >UniRef50_UPI00006A4B1C PREDICTED: similar to LOC495942 protein n=1 Tax=Ciona intestinalis RepID=UPI00006A4B1C Length = 247 Score = 172 bits (435), Expect = 1e-41, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 87/231 (37%), Gaps = 22/231 (9%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQ---GQGW 58 R GR +++R V A+GS +E G+TKVL ++ + + + Sbjct: 13 RFDGRKPSELRRVRCNMGVFTQADGSAYIEQGNTKVLAAIYGPHEASNNMRSRVCLDKCF 72 Query: 59 ITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDV 118 I E+ S+ R R + + ++ I + AAV + I + V Sbjct: 73 INCEFSQAMFSSAERKKRS----RGDRKGKDMSAHIKQTFEAAVRTQLYPRSQIDIYLQV 128 Query: 119 LQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYV 178 L +DG A + A +AL+DA MK V A S + ++ D+ +V Sbjct: 129 LHSDGSLYCACVNAATLALIDA-----------GIAMKDYVCACSASLTKETSLIDINHV 177 Query: 179 EDSAAETDMNVV-MTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 E+ A + + M + +II + +EL L+ + Sbjct: 178 EELAGCAEFSAAIMPKLDQIIY---SELNGRIHQDELGQLVDAVTNGCKDI 225 >UniRef50_A0LV20 Polyribonucleotide nucleotidyltransferase n=63 Tax=Actinobacteria (class) RepID=PNP_ACIC1 Length = 782 Score = 171 bits (434), Expect = 1e-41, Method: Composition-based stats. Identities = 46/237 (19%), Positives = 87/237 (36%), Gaps = 28/237 (11%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIE----EGVPRFLKGQGQ 56 +R GR +RP+T GS L E G+T++L ++ E + + + Sbjct: 338 VRIDGRGLTDIRPLTAEVGIVPRVHGSALFERGETQILGVTTLNMLRMEQQLDTVSPRTK 397 Query: 57 GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 Y P ST G R + L RAL + + + I Sbjct: 398 KRYMHHYNFPPYSTGEV----GRVGSPKRREIGHGALAERALIPVLPSREEFPYAIRQVS 453 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEA----- 171 + + ++G T S+ + ++L++A P++ VA +++G+++ Sbjct: 454 EAIGSNGSTSMGSVCASTLSLLNA-----------GVPLRAPVAGIAMGLISDTVDGETH 502 Query: 172 ---VCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 + D+ ED+ + D V T D + +Q + + L L AR Sbjct: 503 YVTLTDILGAEDAYGDMDFKVAGTRD-FVTALQLDTKLDGIPASVLAAALPQAREAR 558 Score = 57.6 bits (138), Expect = 3e-07, Method: Composition-based stats. Identities = 46/213 (21%), Positives = 68/213 (31%), Gaps = 28/213 (13%) Query: 11 VRPVTLTRN-YTKHAEGSVLVEFGDTKVLCTAS----IEEGVPRFLKGQGQGWITAEYGM 65 VR V + A GS + GDT VL + E F G Sbjct: 20 VRTVRFETGRLARQAGGSAVAYLGDTMVLSATTASKEPREQFDFFPLTVDVEERLYAAGR 79 Query: 66 LPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGT 125 +P S R G+ + RLI R LR + E + + + + Sbjct: 80 IPGSFFRRE------GRPSEEAILTCRLIDRPLRPSFVKGLRNEVQVVVTVLAVDPEHLY 133 Query: 126 RTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAET 185 +I A ++ + A P G + V + ++G V Y E A Sbjct: 134 DVVAINAASMSTLLA-----------GLPFSGPIGGVRMAHIDGTWVAFPTYSELERATF 182 Query: 186 DMNVVMT--EDGRI----IEVQGTAEGEPFTHE 212 DM V DG + +E + T E P E Sbjct: 183 DMVVAGRVLPDGDVAIMMVEAEATEETIPLIRE 215 >UniRef50_C3Z2F7 Putative uncharacterized protein (Fragment) n=4 Tax=Coelomata RepID=C3Z2F7_BRAFL Length = 723 Score = 171 bits (434), Expect = 1e-41, Method: Composition-based stats. Identities = 51/240 (21%), Positives = 91/240 (37%), Gaps = 38/240 (15%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIE--------EGVPRFLKG 53 R GR +R ++ + K GS L + G T+VL T + + + + L G Sbjct: 316 RCDGRDMTSLRDISCDVDLYKPLHGSALFQRGQTQVLSTVTFDSKQASLKMDPIAEILGG 375 Query: 54 QGQGWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTIT 113 Q Y P +T+ + R + L AL+ V FTI Sbjct: 376 VKQKDFMLHYVFPPYATNETGRVSS----NSRRELGHGALAENALKPVVPSD--FPFTIR 429 Query: 114 LDCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV------ 167 L +VL+++G + AS +AL+DA P+ VA V++G+V Sbjct: 430 LTAEVLESNGSSSMASACSGSLALMDA-----------GVPISSPVAGVAIGLVTRTDPN 478 Query: 168 ------NGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALA 221 + + + D+ +ED + D + T+ G + +Q + + ++ A Sbjct: 479 NPTEIQDYKLLTDILGIEDYMGDMDFKMAGTKKG-VTALQADIKLPGLPLKIIMEATQQA 537 Score = 95.8 bits (237), Expect = 1e-18, Method: Composition-based stats. Identities = 50/201 (24%), Positives = 85/201 (42%), Gaps = 23/201 (11%) Query: 11 VRPVTLTRN-YTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRS 69 R + ++ + + A+G +VE GDT + TA + P G +T +Y + Sbjct: 11 CRVMRISTGKFARFADGCAVVEIGDTSAMVTA-VSRTRP---SSAGFLPLTVDYRQKAAA 66 Query: 70 THTRNAREAAKGK--QGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADG--GT 125 R + + Q R + + RLI R++R + E + ++L DG Sbjct: 67 AG-RIPTTHLRRELAQTDREILVSRLIDRSIRPLFPAGYMYETQ--VISNLLAVDGVNDP 123 Query: 126 RTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAET 185 ASI GA AL L P G + AV VGIV+ E V + + S ++ Sbjct: 124 DIASINGASTALA-----------LSDCPWNGPIGAVRVGIVDDEYVINPTRRQLSRSKL 172 Query: 186 DMNVVMTEDGRIIEVQGTAEG 206 ++ V E ++ ++G+AE Sbjct: 173 NLVVTGAERNLVVMLEGSAEN 193 >UniRef50_Q4JV61 Polyribonucleotide nucleotidyltransferase n=37 Tax=Actinobacteria (class) RepID=PNP_CORJK Length = 764 Score = 170 bits (431), Expect = 3e-41, Method: Composition-based stats. Identities = 51/242 (21%), Positives = 90/242 (37%), Gaps = 30/242 (12%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIE----EGVPRFLKGQGQ 56 R GR + +R + + A GS L E G+T++L +++ E L + Sbjct: 377 FRIDGRDSTTIRDLGIVVQLIPRAHGSALFERGETQILGVTTLDMLKMEQQIDSLGPETS 436 Query: 57 GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 Y P ST G R + L RAL + + +TI Sbjct: 437 KRYIHHYNFPPYSTGE----TGRVGSPKRREIGHGALAERALTPVIPSRDDFPYTIRQVS 492 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEA----- 171 + L ++G T S+ + ++L +A P+K VA +++G+V G+ Sbjct: 493 EALSSNGSTSMGSVCASTLSLYNA-----------GVPLKAPVAGIAMGLVTGKVGKAGK 541 Query: 172 -----VCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESN 226 + D+ ED+ + D V T D + +Q + + + L L AR Sbjct: 542 DKYVTLTDILGAEDAFGDMDFKVAGTPD-FVTALQLDTKLDGIPSDVLAEALQQARTARL 600 Query: 227 PL 228 + Sbjct: 601 EI 602 Score = 48.4 bits (114), Expect = 2e-04, Method: Composition-based stats. Identities = 36/193 (18%), Positives = 61/193 (31%), Gaps = 29/193 (15%) Query: 12 RPVTLTRNYT-KHAEGSVLVEFGD-TKVLCTAS----IEEGVPRFLKGQGQGWITAEYGM 65 R + + A+G+V + T +L T + EG+ F G Sbjct: 34 RSIRFETGLLARQADGAVTAYLDEDTMLLSTTAASRQPREGIDFFPLTVDVEERMYSVGR 93 Query: 66 LPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGT 125 +P S R G+ G + RLI R LR E + + + Sbjct: 94 IPGSFFRRE------GRPGTDAILAARLIDRPLRPTFVRGLRNEVQVIVTVLSMDPKDRY 147 Query: 126 RTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV------NGEAVCDLEYVE 179 +I GA + +L P+ G V V + +V G+ V + Sbjct: 148 DVLAINGASAS-----------TQLSGLPVSGPVGGVRMALVVDSDHPEGQWVAFPTREQ 196 Query: 180 DSAAETDMNVVMT 192 + A ++ V Sbjct: 197 EEKAIFELVVAGR 209 >UniRef50_Q17533 Putative exosome complex exonuclease RRP41 n=4 Tax=root RepID=EXOS4_CAEEL Length = 240 Score = 170 bits (431), Expect = 3e-41, Method: Composition-based stats. Identities = 52/228 (22%), Positives = 96/228 (42%), Gaps = 23/228 (10%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 R GR Q+R + ++AEGS +E G+TKVLC + + + I Sbjct: 9 FRIDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAVYGPYEGKSSKRIEDKCAIV 68 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 +Y S R R + ++ EI RL+ +A + + +A + + C+V+Q Sbjct: 69 CQYSATKFSGLERKNRT----RGDRKSTEISRLLEKAFESVILTEAFPRSQLDIFCEVIQ 124 Query: 121 ADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVED 180 DG A + +AL DA PMKG+ +A + G+V+G+ + DL E+ Sbjct: 125 GDGSNLAACVNATSLALADA-----------GIPMKGIASAATCGVVDGKPIVDLTSREE 173 Query: 181 SAAETDMNVV---MTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 + + + ++ ++E+Q + L ++ A+ Sbjct: 174 TDLLPRVTLATICGRDEVILVELQ-----NRLHIDHLSTVMDAAKATC 216 >UniRef50_C3N5R4 Probable exosome complex exonuclease 2 n=12 Tax=Sulfolobaceae RepID=ECX2_SULIA Length = 275 Score = 170 bits (430), Expect = 4e-41, Method: Composition-based stats. Identities = 61/239 (25%), Positives = 101/239 (42%), Gaps = 25/239 (10%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR RP+++T +Y K A+GS LV+ G T VL +E P + QG + Sbjct: 28 RQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKP-YEDTPNQGNLIV 86 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALR--AAVDLKAL------GEFTIT 113 +LP + T G +E+ R++ R+LR A+DL L +T+ Sbjct: 87 NVELLPLAYETFEP-----GPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVW 141 Query: 114 LDCDVLQADGGTRTASITGACVALVDALQKLVEN----------GKLKTNPMKGMVAAVS 163 LD VL G A + AL + VE + P+ V VS Sbjct: 142 LDVYVLDYGGNVLDACTLASVAALHNTKVYKVEQDSNGFRVNKNEVVGKLPLNHPVVTVS 201 Query: 164 VGIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALAR 222 + V+ + D + E+S +T ++ T D +I+ +Q + +G + +++ AR Sbjct: 202 IAKVDKYLIVDPDLDEESIMDTKVSFSYTPDLKIVGIQKSGKG-SMSLQDIDQAENTAR 259 >UniRef50_B7GNH2 Polyribonucleotide nucleotidyltransferase n=30 Tax=Actinobacteridae RepID=PNP_BIFLI Length = 914 Score = 170 bits (430), Expect = 4e-41, Method: Composition-based stats. Identities = 47/239 (19%), Positives = 89/239 (37%), Gaps = 28/239 (11%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIE----EGVPRFLKGQGQG 57 R GR +R ++ + GS L + G+T++L ++ E L G Sbjct: 346 RIDGRGLRDIRTLSAEVDIVPRVHGSALFQRGETQILGVTTLNMLKMEQQIDALSGPQSK 405 Query: 58 WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCD 117 Y M P ST G R + L +AL + + + I + Sbjct: 406 RYMHNYEMPPYSTGE----TGRVGSPKRREIGHGALAEKALVPVLPSREEFPYAIRQVSE 461 Query: 118 VLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEA------ 171 + ++G T S+ + ++L+ A P+K VA +++G+V+G+ Sbjct: 462 AIGSNGSTSMGSVCASTLSLLAA-----------GVPLKAPVAGIAMGLVSGDVDGQHIF 510 Query: 172 --VCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 + D+ ED+ + D V T + I +Q + + + L L A+ + Sbjct: 511 KTLTDILGAEDAFGDMDFKVAGTSE-FITALQLDTKLDGIPADILAAALQQAKEARATI 568 Score = 46.9 bits (110), Expect = 5e-04, Method: Composition-based stats. Identities = 29/208 (13%), Positives = 60/208 (28%), Gaps = 37/208 (17%) Query: 12 RPVTLTRN-YTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRST 70 R + + A+G+ A +++ Y P + Sbjct: 21 RTLRFETGRLAQQADGA-----------VAAYLDDDSMILSTTTAGSSPKENYDFFPLTV 69 Query: 71 HTRNAREAA----------KGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 AA +G+ + R+I R LR E + + Sbjct: 70 DVEEKMYAAGKIPGSFFRREGRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLAVN 129 Query: 121 ADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVED 180 D ++ A + + + P +G V+ V + +++G+ V + E Sbjct: 130 PDDAYDVIALNAASASTM-----------ISGLPFEGPVSGVRLALIDGQWVAFPRWSER 178 Query: 181 SAAETDMNVVM----TEDGRIIEVQGTA 204 A ++ V D I ++ A Sbjct: 179 ERAVFEIVVAGRVVENGDVAIAMIEAGA 206 >UniRef50_B0WG77 Polyribonucleotide nucleotidyltransferase 1, mitochondrial n=2 Tax=Diptera RepID=B0WG77_CULQU Length = 759 Score = 169 bits (428), Expect = 6e-41, Method: Composition-based stats. Identities = 50/244 (20%), Positives = 91/244 (37%), Gaps = 38/244 (15%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIE--------EGVPRFLKG 53 R GR + +R ++ + N K GS L + G T+V T +++ + + G Sbjct: 359 RCDGRYLDDLRKISSSVNMHKPLHGSALFQRGQTQVFATVALDSQESALKLDPITSLDMG 418 Query: 54 QGQGWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTIT 113 Y P +T G G R + L + L + FTI Sbjct: 419 VKSKNFFLHYEFPPYATGE----TGKIGPVGRREIGHGALAEKGLLPIIP--NDNPFTIR 472 Query: 114 LDCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV------ 167 L +VL+++G + A++ +AL+DA P++ A V++G++ Sbjct: 473 LTAEVLESNGSSSMATVCAGSMALMDA-----------GIPVQEAAAGVAIGLMTKYENN 521 Query: 168 ------NGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALA 221 + + DL +ED + DM V T G + +Q + + ++ L A Sbjct: 522 DTKHLQDYRILTDLLGIEDYLGDMDMKVAGTRRG-MTAIQADIKVPGIPLKVVMESLQKA 580 Query: 222 RGES 225 Sbjct: 581 MEAR 584 Score = 96.9 bits (240), Expect = 5e-19, Method: Composition-based stats. Identities = 40/211 (18%), Positives = 77/211 (36%), Gaps = 18/211 (8%) Query: 12 RPVTLTRN-YTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRST 70 R V ++ Y + A+G +V GDT V+ TA + P + +Y + Sbjct: 52 RVVRISSGKYARFADGCSVVTVGDTAVMVTA-VARQKPAGGSNASFLPLVVDYRQKAAAA 110 Query: 71 HTRNAREAAKGK--QGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTA 128 R + + + + RL+ R++R + + + + + + Sbjct: 111 G-RIPTNFLRREMGPSEKEILAARLVDRSMRPLFPAEFRCDTQLVCNMLAIDSSNLPDVQ 169 Query: 129 SITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMN 188 +I A AL L P G V AV VG+V+ E + + E + D+ Sbjct: 170 AINAASAAL-----------SLSDIPWNGPVGAVRVGLVDNEIIINPTRKELQLSALDLV 218 Query: 189 VVMTEDGRIIEVQGTAEGEPFTHEELLILLA 219 V T+ ++ ++G EL + + Sbjct: 219 VSATKQNLVVMLEGRGNI--VNENELRMAIK 247 >UniRef50_C1EGG8 Predicted protein n=2 Tax=Micromonas RepID=C1EGG8_9CHLO Length = 791 Score = 168 bits (426), Expect = 1e-40, Method: Composition-based stats. Identities = 46/235 (19%), Positives = 88/235 (37%), Gaps = 31/235 (13%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQG 57 R GR ++R + N GS + E G+T+ L T +I + G Sbjct: 360 RVDGRGIRELRQLGAESNVLPVVHGSSIFERGNTQALATVTIGKLIDAQKLDAPVGPDNR 419 Query: 58 WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCD 117 + Y S + +G R + L ++L + F + ++ + Sbjct: 420 RMMLHYSFPSFSINE----TPRRGGLSRREIGHGALAEKSLAGIIPAAKEWPFAVRINAE 475 Query: 118 VLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV---------- 167 ++++G + A++ +AL+DA P+K V A+SVG+V Sbjct: 476 TMESNGSSSMAAVCSGSLALMDA-----------GVPIKEHVGAISVGLVMDEDEQTGKV 524 Query: 168 -NGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALA 221 E + D+ +ED + D + T G I +Q + + L+ + +A Sbjct: 525 TRYELLSDIMGLEDVLGDMDFKIAGTR-GGITGIQLDCKPAGIPLDILIEAMDVA 578 Score = 61.9 bits (149), Expect = 2e-08, Method: Composition-based stats. Identities = 37/224 (16%), Positives = 74/224 (33%), Gaps = 24/224 (10%) Query: 13 PVTLTRN-YTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWI--TAEYGMLPRS 69 V + +G+++ GD++V+C A + G+ +Y + Sbjct: 50 RVGFETGRVARLTDGAIVASMGDSRVICAAVCSRD-----ENPDAGFFPLQVDYRERHSA 104 Query: 70 THTRNAREAAK-GKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTA 128 + G R + R++ RA+R + ++ Sbjct: 105 FGKIPPTFTRREGAPKDREVLAMRVVDRAIRPLFPKSFSRDTSVQAIVLATDQSQDPAVL 164 Query: 129 SITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNG--EAVCDLEYVEDSAAETD 186 ++ GA AL + + P G V AV V ++ E + + + A++ Sbjct: 165 AVNGASAAL-----------SVSSIPWNGPVGAVRVSVLGDGNEIILNPSDKDVEASKLT 213 Query: 187 MNVVMTED-GRIIEVQ-GTAEGEPFTHEELLILLALARGESNPL 228 + E+ +IE Q GTA+ + L A + L Sbjct: 214 LFYAGNENRTLMIEAQAGTADEGGVPESVVASALRAAHEAAKVL 257 >UniRef50_O26778 Probable exosome complex exonuclease 2 n=5 Tax=Methanobacteriaceae RepID=ECX2_METTH Length = 271 Score = 168 bits (425), Expect = 2e-40, Method: Composition-based stats. Identities = 55/244 (22%), Positives = 107/244 (43%), Gaps = 24/244 (9%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GRS ++ R +++ AEGS V+ G+T+++ + G P F G I Sbjct: 25 RIDGRSLHEFRDISIETGVISKAEGSSRVKLGNTQIIVGVKPQIGEP-FPDTPEMGVILT 83 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAA--VDLKALG------EFTIT 113 +LP ++ T G R++E+ R++ R +R + +DL+ L + + Sbjct: 84 NSELLPMASPTFEP-----GPPDERSVELSRVVDRCIRESRMIDLEKLCIIEGSKVWMLF 138 Query: 114 LDCDVLQADGGTRTASI---------TGACVALVDALQKLVENGKLKTNPMKGMVAAVSV 164 LD ++ DG A++ T A V+ + ++ K++ P+ + Sbjct: 139 LDLHIIDYDGNLFDAAVLATVAALLDTRIPAAEVEDGEVVINREKMQPLPVNRKALMCTF 198 Query: 165 GIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGE 224 + E V D E+ +++ +TE+G I +Q EG P T +++L +++A + Sbjct: 199 AKIGNEIVLDPSLEEEDILTARISIGVTEEGSICAMQKGGEG-PLTRDDVLKAVSIAVEK 257 Query: 225 SNPL 228 L Sbjct: 258 VPQL 261 >UniRef50_A4RT74 Predicted protein n=2 Tax=Ostreococcus RepID=A4RT74_OSTLU Length = 679 Score = 167 bits (424), Expect = 2e-40, Method: Composition-based stats. Identities = 46/243 (18%), Positives = 88/243 (36%), Gaps = 32/243 (13%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQ 56 +R GR ++R + GS L E G+T+ L T ++ + L G Sbjct: 266 VRVDGRGVYELRNLDGVTGTMPIVHGSALFERGNTQALATVTLGSLEDSQRLDNLTGPTS 325 Query: 57 GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 + Y S + AR R + L ++L + F + ++ Sbjct: 326 KRLMLHYSFPSFSVNETGAR-----GLSRREVGHGALAEKSLLGVFPDEDAFPFAVRVNT 380 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGE------ 170 + L+++G + A++ +AL+DA P+ V A+S+G+V E Sbjct: 381 ETLESNGSSSMAAVCSGSMALMDA-----------GVPLTEHVGAISIGLVMDEDEETGE 429 Query: 171 -----AVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 + D+ +ED + D + T G + +Q + + L+ L A Sbjct: 430 VKRYALMDDIMGLEDVLGDMDFKIAGTRSG-VTGIQLDCKPAGIPLDILIEALDRASAAR 488 Query: 226 NPL 228 + Sbjct: 489 QKV 491 Score = 48.0 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 49/152 (32%), Gaps = 15/152 (9%) Query: 79 AKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADG--GTRTASITGACVA 136 +G R + R+I RA R + + L C V+ +DG ++ GA A Sbjct: 21 REGAPKEREILAMRVIDRATRP--LFEKNFAKEVMLQCVVMASDGVEDPAVLAVNGASAA 78 Query: 137 LVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNVVMTEDGR 196 L + P G + AV V +VN + +++ + E Sbjct: 79 L-----------TASSIPWNGPIGAVRVAVVNKAIIVSPSDEVVESSDFTLFYAGNEARA 127 Query: 197 IIEVQGTAEGEPFTHEELLILLALARGESNPL 228 ++ + + + L A L Sbjct: 128 LMIEAQSNKSGGLEETLVADALRKAHEAVREL 159 >UniRef50_A8NCK3 Putative uncharacterized protein n=2 Tax=Agaricales RepID=A8NCK3_COPC7 Length = 274 Score = 167 bits (424), Expect = 2e-40, Method: Composition-based stats. Identities = 55/229 (24%), Positives = 86/229 (37%), Gaps = 19/229 (8%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTA-SIEEGVPRFLKGQGQGWI 59 R GR ++R +++ + A+GS L+ G T+VL + E R + I Sbjct: 27 FRSDGRRQYELRDLSIDLSRHGEADGSALISHGLTQVLVSVHGPREAKMRSHTFHDRANI 86 Query: 60 TAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVL 119 E + ST R R K R +E I V I + +L Sbjct: 87 NVEVTVASFSTGERRKRL----KGDKRILEFAATIKSTFEPVVRTSLYPRSQIDIYIQIL 142 Query: 120 QADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVE 179 Q DGGT I G +AL++A PM V A+S G+ + + DL +E Sbjct: 143 QQDGGTLQTCINGTTLALINA-----------GIPMSDFVCAISGGVHSTSPMLDLTTLE 191 Query: 180 DSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 ++ VM + +++ V E +L LAR + L Sbjct: 192 ENDVPHVTVAVMPKSKKVVLVTM---ETRLHVERFEEVLCLARDAAAVL 237 >UniRef50_B6K3J3 Exosome complex exonuclease RRP41 n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6K3J3_SCHJY Length = 243 Score = 167 bits (424), Expect = 2e-40, Method: Composition-based stats. Identities = 51/230 (22%), Positives = 85/230 (36%), Gaps = 21/230 (9%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIE-EGVPRFLKGQGQGWI 59 +R GR N++R K A GS ++ G+T+VLC + E + Q + +I Sbjct: 13 LRQDGRRWNEMREFDCRIGVEKTAHGSSFIQHGNTRVLCNVNGPSEPYIKGKSKQEKAFI 72 Query: 60 TAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVL 119 E P S R R + R E I R A+ ++ + I++ +VL Sbjct: 73 NVELNFAPFSLIDRKKR----HRSDKRIQEQCVAIQRTFEQAIQVELYPKSQISISLNVL 128 Query: 120 QADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVE 179 + DGG I A +AL+DA M V + GI + + DL E Sbjct: 129 EDDGGAIATCINAATLALIDA-----------GIAMVDYVCCATAGIYETQVLLDLNTNE 177 Query: 180 D-SAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 + + + V+ T+ Q + + L A + + Sbjct: 178 ESDISWMTVGVLGTKGKVTYLKQ----ETKLSLDLFEPALTTAIAGCDHI 223 >UniRef50_Q74NF6 NEQ248 n=1 Tax=Nanoarchaeum equitans RepID=Q74NF6_NANEQ Length = 233 Score = 167 bits (422), Expect = 4e-40, Method: Composition-based stats. Identities = 54/220 (24%), Positives = 89/220 (40%), Gaps = 26/220 (11%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 MR GR N++R + A+GS G+T + ++ G+ Q + Sbjct: 1 MRFDGRDYNEIRDTEMKIGVISKADGSAYCRTGNTIAIAAVYLKP-------GREQSNLK 53 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 Y MLP + R R +E+ +IA+AL A+ + + TI ++++ Sbjct: 54 VSYRMLPFAGEERKGLGLT-----RREIELSYIIAKALEPAIIFEEIPYLTIEASVEIIK 108 Query: 121 ADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVED 180 AD GTR A+I +AL A PMK +V A++VG V + V DL E+ Sbjct: 109 ADAGTRVAAINALSLALAHA-----------GIPMKALVGAIAVGKVGEKIVLDLNKQEE 157 Query: 181 SAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLAL 220 + D ++ E + E G + + L Sbjct: 158 ---DYDSEIIKKELPQYYEYYGEGKAVDIPMAMYKNKITL 194 >UniRef50_Q9ZK11 Polyribonucleotide nucleotidyltransferase n=13 Tax=Helicobacter RepID=PNP_HELPJ Length = 688 Score = 166 bits (421), Expect = 5e-40, Method: Composition-based stats. Identities = 46/235 (19%), Positives = 87/235 (37%), Gaps = 29/235 (12%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLC--TASIEEGVPRFLKGQGQG- 57 +RP R+ +VRP+++ N A S+L G T+ L ++ + + Sbjct: 313 IRPDKRALEEVRPISIESNLLPMAHSSILFTRGQTQSLVVGVLGMDNDAQTHENLEHKAP 372 Query: 58 ---WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITL 114 Y P ++ G R + L RAL ++ E I L Sbjct: 373 IKERFMFHYNFPPFCVGE----ASSIGATSRRELGHGNLAKRALETSI---KNKEQVIRL 425 Query: 115 DCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNG----E 170 ++L+++G + AS+ +AL + +VA V++G+V+ Sbjct: 426 VSEILESNGSSSMASVCAGSLAL-----------YASGVEIHDLVAGVAMGMVSERQDHA 474 Query: 171 AVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 + D+ +ED+ + D + +G I +Q + E L L A+ Sbjct: 475 ILSDISGLEDAEGDMDFKIAGNLEG-ITAMQMDTKMSGIQLEVLYQALLQAKRAR 528 Score = 69.6 bits (169), Expect = 7e-11, Method: Composition-based stats. Identities = 39/211 (18%), Positives = 74/211 (35%), Gaps = 24/211 (11%) Query: 20 YTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTHTRNAREAA 79 K A S++ G T +L + +E R + + ++ + Sbjct: 20 VAKQATSSLMYRLGKTLILASVCVE----REPVSEDFLPLVVQFLEKSYAAGKIPGGFVK 75 Query: 80 K-GKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQAD--GGTRTASITGACVA 136 + G+ + RLI R LR ITL VL D + +++ A Sbjct: 76 REGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITL--MVLNHDIENDLQVSALNAASAT 133 Query: 137 LVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNVVMTEDGR 196 L A P+K V+A + V+ E + + + + D+ V T++ Sbjct: 134 LFLAHIA----------PIKS-VSACRIARVDNEFIINPSASLLNQSSLDLFVSGTKE-S 181 Query: 197 IIEVQGTAEGEPFTHEE---LLILLALARGE 224 + ++ + G+ E +L L LA+ Sbjct: 182 LNMIEMRSLGQKLNALEEPLMLEALELAQKS 212 >UniRef50_Q2NEX4 Putative exosome complex, exonuclease 2 subunit n=1 Tax=Methanosphaera stadtmanae DSM 3091 RepID=Q2NEX4_METST Length = 265 Score = 166 bits (421), Expect = 5e-40, Method: Composition-based stats. Identities = 53/244 (21%), Positives = 97/244 (39%), Gaps = 24/244 (9%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R R ++ R +++ NY A+GS +V G T V+ + P F G I Sbjct: 22 RIDDRKFSEYRNISIKTNYIGKADGSAMVSIGCTTVIVGVKAQMTTP-FNNAPNSGIIIT 80 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALR--AAVDLKALG------EFTIT 113 +L ++ R G +EI R++ RA+R VDL L + + Sbjct: 81 NTELLAIAS-----RNFEYGPPNKFAVEISRVVDRAIRESPVVDLDKLCVIEGSKSWKLH 135 Query: 114 LDCDVLQADGGTRTASITGACVALVDALQK---------LVENGKLKTNPMKGMVAAVSV 164 +D ++ DG A+ GA AL+ +++ L P+K +V Sbjct: 136 IDMYIVDFDGNIMDAACLGAICALLTTKIPTATSVNGEIVIDEENLTPLPIKNRSILCTV 195 Query: 165 GIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGE 224 +N + + D +E+ ++ ++ EDG + +Q TH+E+ + +A Sbjct: 196 VKINNQLIVDPSKIEEILMDSSVSFGFREDGSLCALQKCGLN-TLTHKEVTKAMKIASIR 254 Query: 225 SNPL 228 + L Sbjct: 255 AKEL 258 >UniRef50_B8D6B8 Probable exosome complex exonuclease 2 n=1 Tax=Desulfurococcus kamchatkensis 1221n RepID=B8D6B8_DESK1 Length = 286 Score = 163 bits (414), Expect = 3e-39, Method: Composition-based stats. Identities = 57/245 (23%), Positives = 101/245 (41%), Gaps = 25/245 (10%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR RP+ + N A GS LV+ G T+V+ +E P F G+G + Sbjct: 28 RIDGRGLTDYRPIEVILNPITKASGSSLVKLGGTQVIAGVKLELEEP-FPDRPGEGVLQV 86 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRA--AVDLKAL----GEFTITLD 115 +P ++ + G +E+ R+I R+LR AV L AL G+ ++ Sbjct: 87 HAEFVPLASPSFEP-----GPPDENAIEVARVIDRSLRESKAVKLDALAIEPGKIVWSVY 141 Query: 116 CDVLQAD--GGTRTASITGACVALVDALQKLVENGK----------LKTNPMKGMVAAVS 163 D+ D G + + +AL + + G+ + P+ +VA V+ Sbjct: 142 TDIYLVDHQGNIIDTGMLASMLALATSRIPELIKGENGYKVDHTKYVGPLPINTLVATVT 201 Query: 164 VGIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARG 223 +GI N + D E++ ++ + + + E GRI +Q F+ L + +A Sbjct: 202 MGIYNDVIIVDPLLEEEAVIDSFITIAIDESGRICGIQKRGMKG-FSRSVLDNTIEIALS 260 Query: 224 ESNPL 228 + L Sbjct: 261 KGREL 265 >UniRef50_Q6CA11 YALI0D06776p n=12 Tax=Saccharomycetales RepID=Q6CA11_YARLI Length = 287 Score = 163 bits (414), Expect = 3e-39, Method: Composition-based stats. Identities = 57/230 (24%), Positives = 94/230 (40%), Gaps = 21/230 (9%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKH-AEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWI 59 +R GR N++R N A+GS VE+G TKV+CT + I Sbjct: 58 LRTDGRRWNEIRNFDCKINTHPTSADGSSYVEWGHTKVVCTVDGPREPDNRQNTTDRAVI 117 Query: 60 TAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVL 119 + + ST TR R+ + R E+ LI + L AV K I ++ V+ Sbjct: 118 SVNVNVASFSTETRIKRQ----RNDKRLAEMNILIRQLLEEAVLTKLNPRTQIAVNITVI 173 Query: 120 QADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVE 179 DGG A I AC+A++DA P+ V+A S G+ + A+ DL +E Sbjct: 174 AQDGGLLPACINAACLAMIDA-----------GVPLTDYVSACSSGVYSNNALIDLNTLE 222 Query: 180 DSAAETDMNV-VMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 + + + V+ + +I + L +LA + ++ + Sbjct: 223 EQDV-PFLTIGVIGKSDKISML---TLETQLPMASLEPVLATSLSGAHAI 268 >UniRef50_Q469M2 Ribosomal RNA-processing protein RRP42 n=5 Tax=Archaea RepID=Q469M2_METBF Length = 260 Score = 162 bits (411), Expect = 7e-39, Method: Composition-based stats. Identities = 63/237 (26%), Positives = 100/237 (42%), Gaps = 17/237 (7%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR R + L N AEGS V GDT+VL ++ G P F Q +G I Sbjct: 22 RQDGRGFKDFRDIKLETNVIPKAEGSAKVTLGDTQVLVGVKLQPGTP-FPDSQDEGVIIT 80 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRA--AVDLKALG------EFTIT 113 + P ++ G +E+ R++ R +R A+D+K L + Sbjct: 81 NLELNPIASPEFEP-----GPPREEAIEMARVVDRGIRESGAIDIKKLCISVGESVWIAY 135 Query: 114 LDCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNP--MKGMVAAVSVGIVNGEA 171 +D VL DG AS A AL+ + ++G P MK M V++ + + Sbjct: 136 IDVHVLNDDGNIIDASSLAAIAALMTTIVPNEQHGIGADVPLAMKEMPVGVTLAKIGSKL 195 Query: 172 VCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 + D E + ET + VV + DG + +Q PFT E+L + +A ++ + Sbjct: 196 MVDPSLDEGAVCETKLTVVSSSDGSVAGMQKMGT-VPFTEAEVLEAIDMACEKAAEI 251 >UniRef50_A9A5D0 3' exoribonuclease n=4 Tax=Thaumarchaeota RepID=A9A5D0_NITMS Length = 272 Score = 162 bits (411), Expect = 7e-39, Method: Composition-based stats. Identities = 52/232 (22%), Positives = 90/232 (38%), Gaps = 24/232 (10%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR+ ++ R V++ N A GS V GDT+V+C I+ P F +G Sbjct: 24 RVDGRALDESREVSIETNAIPKANGSARVRLGDTEVVCGVKIQPDRP-FPDTGDKGLFIC 82 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAA--------VDLKALGEFTIT 113 +LP S T G G +E+ R++ R +R + V K + Sbjct: 83 TAELLPLSHPTVE-----TGPPGPEVIELARVVDRGIRESHMIDVSQLVIEKDKSVIGVF 137 Query: 114 LDCDVLQADGGTRTASITGACVALVDALQKLVE---------NGKLKTNPMKGMVAAVSV 164 D V+ DG A A AL+ + G+ P+ + +V++ Sbjct: 138 ADNVVVDYDGNLFDACSYAATAALLSSKSPKWNWVDDAPALVEGEEVDVPITTIPVSVTM 197 Query: 165 GIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLI 216 G + + D E ++ + + + DG I +Q + FT +E++ Sbjct: 198 GKIGNHIIVDPNGDEWASMDARITITSDSDGNICALQKGGDDG-FTQDEIVQ 248 >UniRef50_Q8SYC8 RE67757p n=23 Tax=Coelomata RepID=Q8SYC8_DROME Length = 246 Score = 162 bits (410), Expect = 9e-39, Method: Composition-based stats. Identities = 44/230 (19%), Positives = 89/230 (38%), Gaps = 23/230 (10%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +R GR +++R + + +GS +E G+TKVL Q + I Sbjct: 13 LRLDGRRPHELRRIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQA---KGNQTESVIN 69 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 +Y ST R R + +++E + + +AL AA+ + I + +VLQ Sbjct: 70 CQYSQATFSTAERKNR----PRGDRKSLEFKLYLQQALSAAIKSELYPRSQIDIYVEVLQ 125 Query: 121 ADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV-NGEAVCDLEYVE 179 DG ++ A +AL+DA + + A + + + + D+ E Sbjct: 126 DDGANYAVALNAATLALIDA-----------GICLNEFIVACTASLSKSNIPLTDISQFE 174 Query: 180 DSAAETDMNV-VMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 + + + V + +I ++ + E F + L ++ A + Sbjct: 175 EVSGGPKLTVAALPTAEKIAFLEMS---ERFHIDHLGTVIETAMAGCREI 221 >UniRef50_C4R4E4 3'-to-5' phosphorolytic exoribonuclease that is a subunit of the exosome n=1 Tax=Pichia pastoris GS115 RepID=C4R4E4_PICPG Length = 246 Score = 161 bits (407), Expect = 2e-38, Method: Composition-based stats. Identities = 50/231 (21%), Positives = 86/231 (37%), Gaps = 23/231 (9%) Query: 1 MRPAGRSNNQVRPVTLTRNYTK-HAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWI 59 +R GR N++R N A+GS VE G+TK++C + R +G + Sbjct: 9 LRVDGRRWNELRRFYCRINTHPIVADGSAYVEAGNTKIVCLLNGPHEPTRSQMNTQKGSL 68 Query: 60 TAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVL 119 + + P ST R + R E+ ++ V LK I ++ VL Sbjct: 69 DIKLHVSPFSTTERRKVT----RNDRRIQELSTILKNTFEQVVILKNYPRTIIEVNVRVL 124 Query: 120 QADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVE 179 DGG A +ALVDA + ++AVS G+ + + + DL +E Sbjct: 125 AQDGGLLAACCNAITLALVDA-----------GIALYDYISAVSAGVFDNQILLDLNRLE 173 Query: 180 DSAAETDM--NVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 + + V T+ ++ + L + +A + L Sbjct: 174 EQDLSSVTIGVVGKTKKLSLVL-----SETRLPQDRLAKVFEVAVNGCHQL 219 >UniRef50_UPI0001925525 PREDICTED: similar to predicted protein n=1 Tax=Hydra magnipapillata RepID=UPI0001925525 Length = 258 Score = 160 bits (405), Expect = 3e-38, Method: Composition-based stats. Identities = 48/211 (22%), Positives = 80/211 (37%), Gaps = 22/211 (10%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR N++RP+ L A GS VE DTK++C P+ + +G I Sbjct: 35 RQDGRGENEIRPMYLKAGTIHQANGSSYVETCDTKLICAVYGPRDNPKRHQFSSKGNIFC 94 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQA 121 E P S H R + + + K E I +A +AV L++ + I + ++L+ Sbjct: 95 EVTFAPFSWHERVSNQDSLSK------EYSSAIVQAFESAVCLESYPKAQIDIYINILEY 148 Query: 122 DGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAV----CDLEY 177 G + + A +AL DA M +V + N ++ D Sbjct: 149 SGNCLSYAFIAASIALADA-----------GIEMLDLVTSCESAFSNETSIQRVCVDPSG 197 Query: 178 VEDSAAETDMNVV-MTEDGRIIEVQGTAEGE 207 E S + + + M +I + E Sbjct: 198 EEVSLCKGRVVIAYMPSLNKISYLSMQGEET 228 >UniRef50_B1L6N6 3' exoribonuclease n=1 Tax=Candidatus Korarchaeum cryptofilum OPF8 RepID=B1L6N6_KORCO Length = 268 Score = 160 bits (405), Expect = 3e-38, Method: Composition-based stats. Identities = 57/244 (23%), Positives = 101/244 (41%), Gaps = 25/244 (10%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR ++ RP+ + AEG ++ G+T+VL + G P F +G + Sbjct: 25 RVDGRGLHEYRPIEVLNGTFTKAEGEAWLKLGETQVLVGVKADLGEP-FPDTPDKGVFVS 83 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAA--------VDLKALGEFTIT 113 +LP ++ T G +E+ R++ RA+R+A V L + I Sbjct: 84 NAELLPVASPTFEP-----GPPDEGAIELARVVDRAIRSADAIDLGSLVILPGKLVYMIF 138 Query: 114 LDCDVLQADGGTRTASITGACVALVDALQKLVE---------NGKLKTNPMKGMVAAVSV 164 LD VL DG + + +AL + VE + +K + S Sbjct: 139 LDMYVLDYDGNLEDSLTLASLIALGRSEIPEVELKENGEIEVKESKRKLELKDIPINFSF 198 Query: 165 GIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGE 224 + + + D E+S ++ + V + +DG++ VQ FT EE+L ++ +AR + Sbjct: 199 VKIGSKILLDPTLEEESVSDASITVAINKDGKVCSVQK--RHGTFTVEEILNIVNVARSK 256 Query: 225 SNPL 228 L Sbjct: 257 WPEL 260 >UniRef50_Q4SLK0 Chromosome 15 SCAF14556, whole genome shotgun sequence n=3 Tax=Tetraodontidae RepID=Q4SLK0_TETNG Length = 291 Score = 158 bits (401), Expect = 1e-37, Method: Composition-based stats. Identities = 55/273 (20%), Positives = 89/273 (32%), Gaps = 67/273 (24%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVP------------- 48 R GR ++R + A+GS +E G+TK L V Sbjct: 13 RIDGRKATELRKIQARMGVFAQADGSAYLEQGNTKALAVVYGPHEVCVCVCVCVCVCVCQ 72 Query: 49 ----RFLKGQGQGWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDL 104 R + I +Y M ST R R ++ E+ + + AAV Sbjct: 73 MRGSRSRARHDRAVINCQYSMATFSTAERKRRPHG----DRKSTEMSLHLKQTFEAAVMT 128 Query: 105 KALGEFTITLDC-------------------------------DVLQADGGTRTASITGA 133 + I + +LQ+DGG + + A Sbjct: 129 QLFPRSQIDIYVKVGLVLMFSLLESRLSQAFYLSVMDKDPPCLQILQSDGGNYSVCVNAA 188 Query: 134 CVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNVV-MT 192 +A++DA PM+ V A +VG V+ + DL Y E+S + + + + Sbjct: 189 TLAVIDA-----------GIPMRDYVCACTVGFVDETPLADLCYAEESGGVSSLGLALLP 237 Query: 193 EDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 G+I VQ A + L L+ A Sbjct: 238 RGGQIALVQMDAR---LHQDNLDALMEAAMTAC 267 >UniRef50_Q9LX74 AT3G46210 protein n=8 Tax=Embryophyta RepID=Q9LX74_ARATH Length = 239 Score = 155 bits (393), Expect = 8e-37, Method: Composition-based stats. Identities = 54/219 (24%), Positives = 85/219 (38%), Gaps = 27/219 (12%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR+ NQ+RP+ +RN GS GDTKVL + + + + Sbjct: 5 REDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNENAEKACF-- 62 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQA 121 E P+S G+ G E + ++ R +++ L T ++ V+ Sbjct: 63 EVIWKPKS-----------GQIGKVEKEYEMILKRTIQSICVLTVNPNTTTSVIIQVVHD 111 Query: 122 DGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGI-VNGEAVCDLEYVED 180 DG +I AC ALVDA PMK + A+ + NG V D +E+ Sbjct: 112 DGSLLPCAINAACAALVDA-----------GIPMKHLAVAICCCLAENGYLVLDPNKLEE 160 Query: 181 SAAETDMNVVMTEDGRIIEVQGT--AEGEPFTHEELLIL 217 +V + +G+ AEGEP H + + Sbjct: 161 KKMTAFAYLVFPNTTLSVLPEGSSVAEGEPVEHGIITSI 199 >UniRef50_A9VBQ1 Predicted protein n=2 Tax=Fungi/Metazoa group RepID=A9VBQ1_MONBE Length = 1336 Score = 154 bits (390), Expect = 2e-36, Method: Composition-based stats. Identities = 64/216 (29%), Positives = 92/216 (42%), Gaps = 20/216 (9%) Query: 7 SNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVP-RFLKGQGQGWITAEYGM 65 ++++R V + A+GS VE G+TKVL + R G ++ E+ Sbjct: 36 GDDELRSVKAKLGVFEQADGSAYVEQGNTKVLAIINGPHDSDARGPNASGHLTVSCEFIY 95 Query: 66 LPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGT 125 ST R AR + + E IAR L + V + L TI L+ VLQADGG Sbjct: 96 ASFSTDQRRARS----RLDRKLAEQGTRIARTLESVVMGQLLSRSTINLNVQVLQADGGV 151 Query: 126 RTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAET 185 +I A +A++DA PMK + A + G++ G AV D + E A Sbjct: 152 LATAINAASLAMMDA-----------GVPMKDFLCACNAGVLEGVAVLDTNHSEALARGP 200 Query: 186 DMNV-VMTEDGRIIEVQGTAEGEPFTHEELLILLAL 220 D+ V VM I+ Q F EL + L L Sbjct: 201 DLTVAVMPRTNTIVLNQDEKRQTNF---ELTMALKL 233 >UniRef50_C7DI02 3' exoribonuclease n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DI02_9EURY Length = 258 Score = 153 bits (387), Expect = 4e-36, Method: Composition-based stats. Identities = 54/236 (22%), Positives = 99/236 (41%), Gaps = 21/236 (8%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R R + R + ++R HAEGS + G TKVL + + + QG + Sbjct: 21 REDSRGSMDFRDLKISRGVIDHAEGSAQADLGATKVLAGVKLVQEDV-YEDTPDQGNLVV 79 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRA-------AVDLKALGEFTITL 114 +LP + A E G +E+ R++ RA+RA ++ L+ +T+ + Sbjct: 80 SAELLPLA-----AAEYETGPPSPEAIELGRVVDRAIRAGNCIDLKSLLLEEGKAWTVYV 134 Query: 115 DCDVLQADGGTRTASITGACVALVDALQKLVENGKL------KTNPMKGMVAAVSVGIVN 168 D VL DG AS+ A A++DA +GK K + +V++ + + Sbjct: 135 DVYVLNFDGNLFDASVIAAMSAILDARVPEYADGKADYTKREKKLKVDNVVSSTTFAKIG 194 Query: 169 GEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGE 224 + D E+ + + + + DG++I F+ EE+ L+A + + Sbjct: 195 KAILLDPTGNEELGMDARLTI--STDGKMIRAMQKGLAGSFSVEEIESLIAESLKK 248 >UniRef50_B3TBC7 Putative 3' exoribonuclease family, domain 1 n=1 Tax=uncultured marine crenarchaeote HF4000_APKG8O8 RepID=B3TBC7_9ARCH Length = 273 Score = 152 bits (384), Expect = 9e-36, Method: Composition-based stats. Identities = 48/244 (19%), Positives = 93/244 (38%), Gaps = 24/244 (9%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR+ ++ RP+++ HA GS V GDT+V+ I+ P F +G Sbjct: 24 RIDGRALDEHRPLSIDVGVIPHANGSARVRLGDTEVVAGVKIQPDRP-FPDMGEKGIFIC 82 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAA--------VDLKALGEFTIT 113 +LP + + G +EI R++ R +R + V +K + Sbjct: 83 TAEILPLAHPSVE-----TGPPQPYVIEIARVVDRGIRESGMIDLSQMVLVKDKSVIGLF 137 Query: 114 LDCDVLQADGGTRTASITGACVALVDALQKLVE---------NGKLKTNPMKGMVAAVSV 164 D V DG A + A++ + E +G+ P+ + +V++ Sbjct: 138 ADNVVTDHDGNLFDACSYASTAAVLTSKMPKWEMKDDKPVLVDGEESDTPITTIPVSVTM 197 Query: 165 GIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGE 224 G++ + D E + + + DG I+ +Q F+ ++L+ L+ Sbjct: 198 GLIGEYIIVDPNLDEWECLDARITITTNSDGNIVALQKGGSSG-FSLDQLIKCSELSIST 256 Query: 225 SNPL 228 + Sbjct: 257 GPEI 260 >UniRef50_D0NT61 Exosome complex exonuclease RRP41-like protein n=1 Tax=Phytophthora infestans T30-4 RepID=D0NT61_PHYIN Length = 777 Score = 151 bits (382), Expect = 1e-35, Method: Composition-based stats. Identities = 49/249 (19%), Positives = 85/249 (34%), Gaps = 39/249 (15%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKG------- 53 +R GR + +VR + +GS E G+TKV+ + G Sbjct: 25 LRVDGRRSEEVRRIRTRFGLFSRVDGSSYYEQGNTKVVAVVYGPRELRTAAAGSVNSGAA 84 Query: 54 -------------QGQGWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRA 100 Q + + E+ +T R + + + +E+ + + A Sbjct: 85 AVGTGSGNAASNTQPRATVNCEFTQAAFATSERKPQRSG----DRKKLEMSLAVKQIFEA 140 Query: 101 AVDLKALGEFTITLDCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVA 160 + + I + VL ADGG ASI +AL+DA + V Sbjct: 141 CIQTQLYPRSQIDIFVQVLHADGGELPASINAITLALIDA-----------GIALNDFVV 189 Query: 161 AVSVGIVNGEAVCDLEYVEDSAAETDMNVVM-TEDGRIIEVQGTAEGEPFTHEELLILLA 219 A S G + +CDL Y E+ A M + + ++ +Q E L+ Sbjct: 190 ASSAGYLQQTMLCDLNYAEEVARAPQMIIALNPRTQKLNLLQM---ECKLQLELFESLME 246 Query: 220 LARGESNPL 228 +A N + Sbjct: 247 VATEGCNQI 255 >UniRef50_D0MYG3 Polyribonucleotide nucleotidyltransferase, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0MYG3_PHYIN Length = 893 Score = 151 bits (381), Expect = 2e-35, Method: Composition-based stats. Identities = 47/237 (19%), Positives = 84/237 (35%), Gaps = 49/237 (20%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----------------E 44 +R GR VRP+ + A GS L G+T+ LC+ ++ Sbjct: 403 VRLDGRPVRIVRPLEMKAAVLPMAHGSSLFARGETQTLCSVTLGPLERGIRLRGALHEAR 462 Query: 45 EGVPRFLKGQGQGWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDL 104 E R + Y P + G R + L +A+ + Sbjct: 463 EQAERDAPAPFK-HAMLHYEFPPFCVNE----TGRVGGTNRRMIGHGALAEKAVLPILPS 517 Query: 105 KALGEFTITLDCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSV 164 +T+ + +V+ +DG + A++ G +AL+DA P++ VA +++ Sbjct: 518 ITEFPYTVRMTSEVVGSDGSSSMATVCGVSLALMDA-----------GVPVRRAVAGIAI 566 Query: 165 GIV----------------NGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAE 205 G+V N + V D+ ED + D V T G + +Q + Sbjct: 567 GLVTAGDPFACQEKRIEEGNYQLVTDILGSEDHYGDMDFKVAGTTSG-VTALQLDVK 622 Score = 73.1 bits (178), Expect = 7e-12, Method: Composition-based stats. Identities = 40/206 (19%), Positives = 66/206 (32%), Gaps = 24/206 (11%) Query: 24 AEGSVLVEFGDTKVLCTA--SIEEGVPRFLKGQGQG---WITAEYGMLPRST---HTRNA 75 A+G+VL G T +L T G P G Q +T ++ + + Sbjct: 94 ADGAVLASCGRTVLLTTVVSGDHHGNPSVNGGSTQRDFLPLTVDFRVKSHAVGLIPDNQK 153 Query: 76 REAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTASITGACV 135 R G + R++ RA+R + + ++ A Sbjct: 154 RREFTG--SDEEVLQSRVVDRAIRPLFPRDYCENTQVLATVQSYDPNNDPLVVAVNSASA 211 Query: 136 ALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNVVMTEDG 195 L + P G V V V V+G+ V + + AA D+ T + Sbjct: 212 VL-----------SMSDIPWDGPVGCVRVVEVDGQLVVNPTAPQREAATMDVLYAGTAE- 259 Query: 196 RIIEVQGTAEGEPFTHEELLILLALA 221 I V+ + + T L L LA Sbjct: 260 HAIMVEASGDE--VTEARLDEALDLA 283 >UniRef50_O42872 Exosome complex component ski6 n=1 Tax=Schizosaccharomyces pombe RepID=RRP41_SCHPO Length = 242 Score = 151 bits (381), Expect = 2e-35, Method: Composition-based stats. Identities = 48/229 (20%), Positives = 83/229 (36%), Gaps = 19/229 (8%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIE-EGVPRFLKGQGQGWI 59 +R GR +++R GS +E G+TKVLC E V + + ++ Sbjct: 12 LRNDGRRWDEMRNFQCRIGIEPSENGSAFIELGNTKVLCIVDGPSEPVIKSKARADRTFV 71 Query: 60 TAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVL 119 E + ST R K R + + + I++ VL Sbjct: 72 NVEINIASFSTIDVKKRF----KSDRRIQLQCLALQNTFEEIIQTELYPRSQISVYLHVL 127 Query: 120 QADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVE 179 Q DG + I +AL+DA P+K V + GIV + + DL +E Sbjct: 128 QDDGAVMASCINATTLALIDA-----------GIPVKDFVCCSTAGIVESDMLLDLNSLE 176 Query: 180 DSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 +SA V+ +++ +Q + L ++ +A S + Sbjct: 177 ESALSWLTVAVLGNIKKVVYMQ---LETSMHLDYLESVMNMAIAGSEHI 222 >UniRef50_UPI0000D569CA PREDICTED: similar to exosomal 3-5 exoribonuclease complex subunit Rrp41-like protein n=3 Tax=Endopterygota RepID=UPI0000D569CA Length = 282 Score = 149 bits (376), Expect = 7e-35, Method: Composition-based stats. Identities = 43/184 (23%), Positives = 73/184 (39%), Gaps = 16/184 (8%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR++ + R + L A+GS +E TKV+ + +P +G I Sbjct: 42 RADGRTSTEHRKIFLKTGVVSQAKGSAYIELDQTKVIVSVFDPREIPNKTDYSSKGEIYC 101 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQA 121 E+ P S H R + Q + ++ +AL +AV F + + VL Sbjct: 102 EFKFAPFSCHKRRLHQ-----QDAEEQQFSAIMKQALESAVFRHEFPNFQVDIYAMVLHN 156 Query: 122 DGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDS 181 DG +A+IT A VAL A PM ++ +V++ + + D E+ Sbjct: 157 DGAALSAAITAAGVALAHA-----------GIPMYDLITSVTLAVQGNHLLVDPTLEEER 205 Query: 182 AAET 185 + Sbjct: 206 LCQV 209 >UniRef50_A8MA85 3' exoribonuclease n=1 Tax=Caldivirga maquilingensis IC-167 RepID=A8MA85_CALMQ Length = 279 Score = 148 bits (374), Expect = 1e-34, Method: Composition-based stats. Identities = 56/237 (23%), Positives = 93/237 (39%), Gaps = 28/237 (11%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 RP R +R +T+ K A+GS LV G+TKV+ E G P F +G + Sbjct: 26 RPDDRQLISMRDLTIRVGVIKTADGSALVNLGNTKVIAGIKFELGKP-FEDTPNEGNLIV 84 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAA--VDLKAL------GEFTIT 113 P + T G +EI R+I RALR + + L+ L +++ Sbjct: 85 NLETPPLAAPTFEP-----GPPDENAIEIARIIDRALRHSNYIPLRDLVIIPGKSVYSMW 139 Query: 114 LDCDVLQADGGTRTASITGACVALVDALQK-------LVENGKLKTNPMK----GMVAAV 162 +D VL DG +S+ A A+ +A V+ K P+ M V Sbjct: 140 VDIYVLNHDGNLIDSSMLAAVSAIANAQVPRAIIDGENVKLDKSTKIPLNINPQNMPLTV 199 Query: 163 SVGIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLA 219 + ++ + D E+ ++ V + I+ +Q FT EE+ ++ Sbjct: 200 TYYKIDKYLIVDPTLEEEVMSDGRFTVASDGEN-IVALQKG--EGYFTPEEVDSMMN 253 >UniRef50_Q8ZVN0 Probable exosome complex exonuclease 2 n=5 Tax=Thermoproteaceae RepID=ECX2_PYRAE Length = 274 Score = 147 bits (371), Expect = 3e-34, Method: Composition-based stats. Identities = 56/246 (22%), Positives = 91/246 (36%), Gaps = 28/246 (11%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR Q R V + K A+GS V+ G T V+ + G P F +G + Sbjct: 29 RVDGRGPEQTRNVEINVGVVKTADGSAEVKLGKTHVVAGVKVGLGQP-FPDAPDEGVLVV 87 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAA--VDLKAL-----GEFTITL 114 +LP ++ G +E+ R++ R +R VD K L + + + Sbjct: 88 NAEVLPHASPY-----TEVGPPDEFAIELARVVDRGIRHCGYVDFKKLAVEGGKAYVLWI 142 Query: 115 DCDVLQADGGTRTASITGACVALVDALQKLV------------ENGKLKTNPMKGMVAAV 162 D V+ DG + + AL + +V N + AV Sbjct: 143 DLYVINDDGNLIDVANLASVAALKNTQLPVVVKDEAGVVKLDRNNKAPLPVDISKAPIAV 202 Query: 163 SVGIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALAR 222 SVG + D + E+ + + + +ED +I+ Q T FT E+ L LA Sbjct: 203 SVGKIGNVLFLDPTFEEELSLDGRITFTFSED-KIVAAQKT--LGYFTQSEIEAALNLAL 259 Query: 223 GESNPL 228 + L Sbjct: 260 RGRDRL 265 >UniRef50_A1RXQ5 Ribosomal RNA-processing protein RRP42 n=1 Tax=Thermofilum pendens Hrk 5 RepID=A1RXQ5_THEPD Length = 272 Score = 147 bits (371), Expect = 3e-34, Method: Composition-based stats. Identities = 59/243 (24%), Positives = 97/243 (39%), Gaps = 23/243 (9%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR +Q R + L + A+GS V G T+V+ + G P F +G Sbjct: 25 RLDGRKADQYREIRLEKGIIGKADGSARVFLGSTQVIAGVKLAIGTP-FPDAPNEGVQIV 83 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRA--AVDLKALGE------FTIT 113 + P ++ G G +E+ R++ R R+ VDL L +T+ Sbjct: 84 NAELSPVASPFFEP-----GPPGEEDIELARVVDRGFRSAKVVDLAKLSIIPSAKCWTLY 138 Query: 114 LDCDVLQADGGTRTASITGACVALVDALQK--------LVENGKLKTNPMKGMVAAVSVG 165 +D L DG A+ A +AL+D + + P+ +V V+V Sbjct: 139 IDIYPLDHDGNLVDAAGLAALLALLDTKLPRTSVQENKIAVLDEKDPLPINTLVVYVTVA 198 Query: 166 IVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 + V D E+ A+ + +TE G I +Q + EG F +E+L +A S Sbjct: 199 KIGEYLVVDPTLEEELTADAKITFGITERGEICAIQKSGEG-SFRPDEVLRARDMALKAS 257 Query: 226 NPL 228 + L Sbjct: 258 STL 260 >UniRef50_B7GAV6 Predicted protein n=2 Tax=Bacillariophyta RepID=B7GAV6_PHATR Length = 274 Score = 143 bits (362), Expect = 3e-33, Method: Composition-based stats. Identities = 63/241 (26%), Positives = 94/241 (39%), Gaps = 31/241 (12%) Query: 1 MRPAGRSNNQVRPVTLTRNYTK--HAEGSVLVEFGDTKVLCTASIE-EGVPRFLKGQGQG 57 +R GR +++R + + + GS LVE G T VL T + + R + Q Sbjct: 16 LRNDGRKPHEIRRMRVQMSPLSVSTISGSALVEMGLTVVLATVRGPVDCLRRADENPDQA 75 Query: 58 WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCD 117 + P S+ R A K R +E ++ RA+ AA+ L + I L Sbjct: 76 VLDVTVQSAPFSSSA--DRRVANPKTDRRLIEASHMLKRAMEAAILLHLYPKSRIELVVS 133 Query: 118 VLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEA------ 171 VL DGG A+I A +AL+DA PMK V A S G+ A Sbjct: 134 VLADDGGRLCAAINAATLALMDA-----------GIPMKDFVCACSAGLPGTSATPDSHA 182 Query: 172 --VCDLEYVEDSA----AETDMNVV-MTEDGRIIEVQGTAEGEPFTHEELLILLALARGE 224 + DL E+S+ A T M V + + ++ Q E + L +L A Sbjct: 183 LTLVDLNRQEESSTGGQAATHMPVALLPQRNTLVLAQ--CEARLPNLDTLERVLDAATEG 240 Query: 225 S 225 Sbjct: 241 C 241 >UniRef50_B3S0I5 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens RepID=B3S0I5_TRIAD Length = 741 Score = 143 bits (361), Expect = 4e-33, Method: Composition-based stats. Identities = 52/237 (21%), Positives = 87/237 (36%), Gaps = 59/237 (24%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +R GR N +RP+ N GS L + G+++ Sbjct: 338 IRCDGRGLNDLRPIDAEINIFPALHGSSLFKRGESQ------------------------ 373 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 P + N + R + L ALR+ V FT+ L VL Sbjct: 374 ----FPPYA----NNEIGRVMENSRREIGHGTLAKNALRSVV--SDDFPFTVRLTGQVLM 423 Query: 121 ADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV----------NGE 170 ++G T AS G +AL+DA P+ +A V++G+V N + Sbjct: 424 SNGSTSMASACGGSLALMDA-----------GVPISRHIAGVAMGLVANPSDDGSKFNYK 472 Query: 171 AVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILL---ALARGE 224 + D+ +ED E D + + +G I +Q + + E + + A+ARG+ Sbjct: 473 ILTDIAGIEDYFGEMDFKIAGSREG-ITSLQADFKVTGVSMELIEEAIKKSAVARGK 528 Score = 73.4 bits (179), Expect = 6e-12, Method: Composition-based stats. Identities = 42/186 (22%), Positives = 71/186 (38%), Gaps = 32/186 (17%) Query: 24 AEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTHTRNAREAAKG-K 82 A+GSVLVE G T VL TA + G + +Y +T + Sbjct: 65 ADGSVLVETGSTAVLVTAVMSRAT---TSYAGFAPLRVDYREKASATGKIPVNFFKRELG 121 Query: 83 QGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTASITGACVALVDALQ 142 R + R I R++R++ + + C ++ AD A D + Sbjct: 122 PSEREILASRSIDRSIRSSFQRGM--PQEVQIVCSLMSAD-------------AERDTIV 166 Query: 143 KLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQG 202 + G AV VG +N E + + VE ++ D+ +V + G ++ ++G Sbjct: 167 PAINGG------------AVRVGYINDEVIINPTRVELYQSKLDLVIVASAKG-LVMLEG 213 Query: 203 TAEGEP 208 TA P Sbjct: 214 TASELP 219 >UniRef50_B9MZ65 Predicted protein n=6 Tax=Magnoliophyta RepID=B9MZ65_POPTR Length = 263 Score = 143 bits (360), Expect = 6e-33, Method: Composition-based stats. Identities = 50/228 (21%), Positives = 83/228 (36%), Gaps = 23/228 (10%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR +Q R A GS EFG+TKV+ + + + +G + Sbjct: 41 RSDGRGFHQCRSAFFRTGAVNSAAGSAYAEFGNTKVIVSVFGPRESKKAMMYSDKGKLNC 100 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQA 121 +T QG E ++ +AL AV L+ + T+ + VL++ Sbjct: 101 NVSYTTFAT--------TVHGQGSDNKEFSTMLHKALEGAVMLETFPKTTVDVFALVLES 152 Query: 122 DGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDS 181 G I+ A +AL DA M +VA VSV + + D E+S Sbjct: 153 GGSDLPVVISCASLALADA-----------GIMMYDLVAGVSVSCLGRNLIIDPTLEEES 201 Query: 182 AAETDMNVV-MTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 + + + M I ++ T E ++ L + L + L Sbjct: 202 FQDGSLMITCMPSHYEITQLTITGE---WSTANLNEAMQLCLDACSKL 246 >UniRef50_UPI000186F240 conserved hypothetical protein n=1 Tax=Pediculus humanus corporis RepID=UPI000186F240 Length = 278 Score = 142 bits (359), Expect = 8e-33, Method: Composition-based stats. Identities = 43/239 (17%), Positives = 84/239 (35%), Gaps = 30/239 (12%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +R GR+ R + + A+GS +E +TKVL + +PR + G I Sbjct: 41 IRKDGRTFEDQRKIYMKTGVVTQAKGSAYLELNNTKVLVSVFEPREIPRLSEFTPNGEIY 100 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 E+ P R ++ ++ R+L AV F + + +L Sbjct: 101 CEFKFAPFYGLERKG-----HIMDLEEKDLSIILKRSLEPAVCRHEFPNFQVDVYALLLD 155 Query: 121 ADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVED 180 DG +A+IT PM ++ +V++GI N D + E+ Sbjct: 156 NDGSCLSAAIT-----------AAGLALADAGIPMYDILTSVTLGIHNDMIFIDPNFEEE 204 Query: 181 SAAETDMN-------VV----MTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 ++ ++ M E ++ E+ + + +L + L + + Sbjct: 205 KFCKSFFKNKTSEIGIISLSYMPEMAQVTEITQSG---TVSINTILKSMDLLISKCKTI 260 >UniRef50_UPI00015B5B6C PREDICTED: similar to ENSANGP00000009222 n=2 Tax=Apocrita RepID=UPI00015B5B6C Length = 270 Score = 142 bits (357), Expect = 1e-32, Method: Composition-based stats. Identities = 51/243 (20%), Positives = 91/243 (37%), Gaps = 36/243 (14%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQG----Q 56 +R GR ++R + L A+GS +E G TK+L T + Sbjct: 12 LRADGRRPLELRRIRLRMGVFGQADGSAYLEQGKTKILATVYGPHQPRGKANANALKAVK 71 Query: 57 GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 G + +Y S ++ +G ++ E + + A+ A ++L+ I + Sbjct: 72 GIVNCQYSTAVFSFGAGERKKKPRG--DRKSQERSQQLRHAMEAIINLELFARSQIDIFV 129 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVN-------- 168 +VLQ DG ++ A +AL+DA P+K SV + + Sbjct: 130 EVLQVDGSDFCVAVNAATLALIDA-----------GIPIKDYAIGCSVTVSDNLLGDDDD 178 Query: 169 ---GEAVCDLEYVEDSAAETDMNVVM-------TEDG-RIIEVQGTAEGEPFTHEELLIL 217 G + D ++E+ + ++VV TE +I G + + E L L Sbjct: 179 SGQGTGILDANWIEECSPGVTLSVVALPKVVDETETKSSVILCHGAGQRLHLSRLEPLRL 238 Query: 218 LAL 220 AL Sbjct: 239 RAL 241 >UniRef50_Q9YC05 Probable exosome complex exonuclease 2 n=4 Tax=Desulfurococcales RepID=ECX2_AERPE Length = 276 Score = 142 bits (357), Expect = 1e-32, Method: Composition-based stats. Identities = 55/243 (22%), Positives = 98/243 (40%), Gaps = 26/243 (10%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 RP R R V + + AEGS LV+ G T+V+ G P F QG +T Sbjct: 28 RPGDRDLKTPRNVKIETGIIEKAEGSALVKLGKTQVIAGVKAGVGAP-FKDTPNQGVLTV 86 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAA--VDLKAL------GEFTIT 113 +P ++ G +E+ R++ R+LR VDL++L + + Sbjct: 87 HAEFVPLASPVFEP-----GPPDENAIELARVVDRSLREVGAVDLESLVIRPGEKVWVLW 141 Query: 114 LDCDVLQADGGTRTASITGACVALVDALQKLVE-----------NGKLKTNPMKGMVAAV 162 +D ++ DG AS+ L+ A E G+ + +K V V Sbjct: 142 VDLYIIDHDGNLFDASMLATMAVLLTARLPRYEESETGEIIISKEGEGEELKVKTRVVTV 201 Query: 163 SVGIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALAR 222 + ++ V D E++ ++ + + E+GRI+ +Q T G T ++ ++ + Sbjct: 202 TTAKIDRYIVVDPNIEEEAVSDVRLVTAVDENGRIVGLQKTGMG-SLTEADIETMIGYSL 260 Query: 223 GES 225 S Sbjct: 261 EAS 263 >UniRef50_UPI00006CFE64 3'''' exoribonuclease family, domain 1 containing protein n=1 Tax=Tetrahymena thermophila RepID=UPI00006CFE64 Length = 240 Score = 140 bits (353), Expect = 3e-32, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 89/229 (38%), Gaps = 20/229 (8%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 R GR N++R V + + EGS + G T+++C + + + +G++ Sbjct: 11 FREDGRKKNELRKVDCILGFDQTVEGSCKLIQGLTEIVCLIKGPHN--KSTRRESEGFLN 68 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 +Y + P S R K E + + + + + LG I + V+Q Sbjct: 69 VQYNVAPFSGTDRRKIS----KFDKDWNEFTENLRVSFESVILTEQLGSGEIDIIVSVIQ 124 Query: 121 ADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVED 180 ADG +++ +AL+DA PMK + +V +N E + D Y E Sbjct: 125 ADGSAKSSIFNAISLALMDA-----------GIPMKDFTVSSTVISLNSEILLDATYQEQ 173 Query: 181 SAAETDMNVV-MTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 A ++ + + ++ ++ + + ++ + +A + Sbjct: 174 KKASAELIISYLPRSDQVDFMEM--KSSKISQQDTKEMCKIAVDGCKQM 220 >UniRef50_P46948 Exosome complex component SKI6 n=12 Tax=Saccharomycetaceae RepID=RRP41_YEAST Length = 246 Score = 140 bits (352), Expect = 4e-32, Method: Composition-based stats. Identities = 50/225 (22%), Positives = 92/225 (40%), Gaps = 21/225 (9%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHA-EGSVLVEFGDTKVLCTAS-IEEGVPRFLKGQGQGW 58 +R GR N++R + N HA +GS +E G+ K++ +E + + Sbjct: 12 LRLDGRRWNELRRFESSINTHPHAADGSSYMEQGNNKIITLVKGPKEPRLKSQMDTSKAL 71 Query: 59 ITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDV 118 + + S R+ + K R +EIQ + R V L I ++ V Sbjct: 72 LNVSVNITKFSKFERSK---SSHKNERRVLEIQTSLVRMFEKNVMLNIYPRTVIDIEIHV 128 Query: 119 LQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYV 178 L+ DGG + I G +AL+DA M ++ +SVG+ + + D + Sbjct: 129 LEQDGGIMGSLINGITLALIDA-----------GISMFDYISGISVGLYDTTPLLDTNSL 177 Query: 179 EDSAAETDM--NVVMTEDGRIIEVQGTAEGEPFTHEELLILLALA 221 E++A T V +E ++ V+ + P E ++ + +A Sbjct: 178 EENAMSTVTLGVVGKSEKLSLLLVE---DKIPLDRLENVLAIGIA 219 >UniRef50_B6AK41 3' exoribonuclease family protein, putative n=1 Tax=Cryptosporidium muris RN66 RepID=B6AK41_9CRYT Length = 250 Score = 140 bits (352), Expect = 5e-32, Method: Composition-based stats. Identities = 51/228 (22%), Positives = 89/228 (39%), Gaps = 21/228 (9%) Query: 1 MRPAGRSNNQVRPVTLTR--NYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGW 58 R GR N++R ++ + ++ SV E G TK++ SI +P G Sbjct: 16 FRIDGRRFNEIRRISCKISNGTSNLSDSSVYYEQGQTKLI--TSICGPIPLLNSSSQSGI 73 Query: 59 -ITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCD 117 + + M P T R R GK E +I R +A+ + + I ++ + Sbjct: 74 QLHCNFRMSPFCTPDRRKR----GKNDRFCTENSLIITRTFESAI-SEIYVKSQIIININ 128 Query: 118 VLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEY 177 VL+ADGG R+A+I +AL +A MK +V + ++G+ + D+ Sbjct: 129 VLEADGGVRSAAINATSLALANA-----------GIGMKDLVISSTIGLYGRIPLYDIVQ 177 Query: 178 VEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 E +T M+ + I + L +LL + Sbjct: 178 AEFDVLKTIMSFAIYSTDENIAPITMELNTKVDEDILNLLLEHSAAAC 225 >UniRef50_D0NP71 Exosome complex exonuclease MTR3-like protein n=1 Tax=Phytophthora infestans T30-4 RepID=D0NP71_PHYIN Length = 252 Score = 139 bits (350), Expect = 7e-32, Method: Composition-based stats. Identities = 54/228 (23%), Positives = 89/228 (39%), Gaps = 22/228 (9%) Query: 2 RPA-GRSN-NQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLK-GQGQGW 58 R R++ +++R + A GS VE G T+VLC R + G Sbjct: 26 RLDKSRTSSDEMRRPFMQLGAVSGAAGSAYVELGRTRVLCAVYGPRTDTRARREFSKDGQ 85 Query: 59 ITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDV 118 + + P + + + Q ME+ ++ AL AV L L + I++ + Sbjct: 86 LVCDVKYAPFA----DKLTRRERGQDPDEMELSAIVEEALAPAVMLHKLPKCIISVFVTI 141 Query: 119 LQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYV 178 L+ DGG A++ A +AL DA + M +V A S GIVNG V D Sbjct: 142 LEDDGGVLAAALNCASLALADAAVE-----------MYDVVTASSAGIVNGSVVLDPSRE 190 Query: 179 EDSAAETDMNVV-MTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 E+ + + + M GR+ + + H +L + L Sbjct: 191 EEQRGDGKLALAYMPSMGRVTYMLQAGK---IHHTQLQEAVDLCTDAC 235 >UniRef50_A2RVK7 At4g27490 n=9 Tax=Magnoliophyta RepID=A2RVK7_ARATH Length = 256 Score = 138 bits (348), Expect = 1e-31, Method: Composition-based stats. Identities = 50/228 (21%), Positives = 85/228 (37%), Gaps = 23/228 (10%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 RP GR +Q RP L A GS EFG+TKV+ + + + G + Sbjct: 34 RPDGRGFHQCRPALLQTGAVSSASGSAYAEFGNTKVIVSVFGPRESKKAMVYSDVGRLNC 93 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQA 121 ++ T QG E ++ +AL + ++ + T+ + VL++ Sbjct: 94 NVSYTNFASPT--------LGQGTDHKEYSSMLHKALEGVIMMETFPKTTVDVFALVLES 145 Query: 122 DGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVED- 180 G + I+ A +AL DA M ++ AVSV + + D E+ Sbjct: 146 GGSDLSVLISCASLALADA-----------GIMMYDLITAVSVSCIGKSLMIDPVTEEEG 194 Query: 181 SAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 + M M I ++ T E +T + + L S+ L Sbjct: 195 CEDGSFMMTCMPSRYEITQLTITGE---WTTPNINEAMQLCLDASSKL 239 >UniRef50_Q5TMQ4 AGAP011906-PA n=4 Tax=Culicidae RepID=Q5TMQ4_ANOGA Length = 308 Score = 138 bits (348), Expect = 1e-31, Method: Composition-based stats. Identities = 42/182 (23%), Positives = 67/182 (36%), Gaps = 16/182 (8%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR + R A+GS VE G+TKV+ + +P+ K G + Sbjct: 43 RKDGRRLQESRKYYAKIGVVSTAKGSAYVELGNTKVIVSVFDPREIPKQNKFCELGELFC 102 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQA 121 + P + R + R + + AL +V I + +VL+ Sbjct: 103 DLKFSPFAPAVRKTHQ-----TDARERSMTAALTSALNPSVCRHLFPNLQIDVFANVLED 157 Query: 122 DGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDS 181 DG +IT A +AL DA PM +V A + G++ V D E++ Sbjct: 158 DGSALAVAITAAGLALGDAC-----------VPMFDIVTAATAGVLGDRVVMDPTAEEEA 206 Query: 182 AA 183 Sbjct: 207 LC 208 >UniRef50_Q84T68 Os03g0854200 protein n=9 Tax=Magnoliophyta RepID=Q84T68_ORYSJ Length = 238 Score = 138 bits (348), Expect = 1e-31, Method: Composition-based stats. Identities = 47/194 (24%), Positives = 76/194 (39%), Gaps = 25/194 (12%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR+ NQ+RP + TRN A GS GDT VL + R + + I Sbjct: 5 RADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRKGENPEKASI-- 62 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQA 121 E P + G+ G + E + + R L++ L T ++ V+ Sbjct: 63 EVVWKPMT-----------GQIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGN 111 Query: 122 DGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV-NGEAVCDLEYVED 180 DG +I C ALV A P+K + A+ G++ +GE + D E+ Sbjct: 112 DGSLLPCAINACCAALVFA-----------GIPLKHLAVAIGCGVLEDGEVILDTNKAEE 160 Query: 181 SAAETDMNVVMTED 194 ++ ++V Sbjct: 161 QQLKSFAHLVFPNS 174 >UniRef50_Q6P0I8 Exosome complex exonuclease MTR3 n=5 Tax=Euteleostomi RepID=EXOS6_DANRE Length = 271 Score = 137 bits (346), Expect = 2e-31, Method: Composition-based stats. Identities = 48/234 (20%), Positives = 83/234 (35%), Gaps = 23/234 (9%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQ-GWIT 60 R R N VRPV A+GS +E G+TK++C+ + R + + G + Sbjct: 33 RQGVRGNGDVRPVFARCGLVSQAKGSAYIEAGNTKIICSVYGPKETERRDETDMKTGRLV 92 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 ++ + P S R A QG ++ + +LR V L I ++ VL+ Sbjct: 93 CDFRLAPFSCVKRGA-----WIQGSEERDLSATLMESLRPGVCLHRYPRSQIDVNVMVLE 147 Query: 121 ADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVED 180 DG ++T A +AL DA M +V ++ + D Y E+ Sbjct: 148 NDGSVLAHAVTCASMALADA-----------GIEMYDIVLGCTLRQSGNACLVDPSYAEE 196 Query: 181 S------AAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 + V + + +V G + L + + L Sbjct: 197 CGSWQEGYGDNQGCVTLALLPNLNQVSGLNADGEMREDTLTEAMRTCMDGCHKL 250 >UniRef50_B7FVX4 Predicted protein n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7FVX4_PHATR Length = 956 Score = 132 bits (333), Expect = 7e-30, Method: Composition-based stats. Identities = 59/300 (19%), Positives = 89/300 (29%), Gaps = 88/300 (29%) Query: 2 RPAGRS-----NNQVRPVTLTRNYTK-HAEGSVLVEFGDTKVLCTASIEEG--------- 46 R GR +RP+ + GS L GDT+VLCTA++ Sbjct: 485 RADGRGLPGHGWKTIRPLKVQMPALPDTVHGSALFARGDTQVLCTATLGPPGDGQPMKDP 544 Query: 47 -----VPRFLKGQGQGWITAEYGMLP---------------------------------- 67 PR +K + Y LP Sbjct: 545 YLATDNPRRVKSGAETTAAGYYSELPVGSLRFLRTQESLVSDMNSRKVKADKERTGDSGS 604 Query: 68 -----RSTHTRNAREAAKGKQ-------GGRTMEIQRLIARALRAAVDLKALGEFTITLD 115 R+ + A G R + L +AL + + I + Sbjct: 605 LAEVKRAFLQYDFPPYATGTVPIGSQAHNRRAIGHGALAEKALLPVLPDAHDFPYAIRIS 664 Query: 116 CDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNG------ 169 +V ++G + AS+ G +AL+DA P++ VA VSVG+ Sbjct: 665 SEVTDSNGSSSMASVCGGTLALLDA-----------GVPIQMPVAGVSVGLARDVDAGEA 713 Query: 170 ---EAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESN 226 + D+ ED D + T G I Q + E + L LA N Sbjct: 714 GVHRLLLDITGTEDYYGGMDFKIAGTRKG-ITAFQLDVKQL-LPLEIVTEALQLACRGRN 771 Score = 41.5 bits (96), Expect = 0.022, Method: Composition-based stats. Identities = 38/250 (15%), Positives = 77/250 (30%), Gaps = 43/250 (17%) Query: 13 PVTLTRNYTKH-AEGSVLVEFGDTKVLCTAS--IEEGVPRFLKGQGQGWITAEYGMLPRS 69 P+ SV+ + G T VL T + + ++T +Y Sbjct: 62 PIQFGTGKLARLTHSSVVGQGGSTVVLATVAHQPPDTPNGDQNNAASTFLTVDYR----- 116 Query: 70 THTRNAREAAKGKQGGR---------TMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 R GGR + R I RALR + + + + + C V Sbjct: 117 --QRYHGVGKIPSNGGRRDNAVLSTPEVLASRAIDRALRPLIRTEDAIDGRLHVTCSVQS 174 Query: 121 ADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV------------- 167 + + + L+D N T+P+ + + ++ Sbjct: 175 YE--VFASEVDLRQDGLLDEKDNDATNASHSTHPVAMALNTAAAALLQQGHLTQPVAATV 232 Query: 168 -------NGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTA--EGEPFTHEELLILL 218 +G D + + + ++ T DG ++ ++ T+ + + LL Sbjct: 233 LAVAAHGDGVVWQDPVPEQLADSYGELLYAGTADGHVVMLEWTSHRLATGLSESHMTQLL 292 Query: 219 ALARGESNPL 228 LA+ P+ Sbjct: 293 ELAQTSIRPV 302 >UniRef50_D2UZQ3 3'-5' exoribonuclease/RNA-binding protein-like protein n=1 Tax=Naegleria gruberi RepID=D2UZQ3_NAEGR Length = 300 Score = 132 bits (333), Expect = 7e-30, Method: Composition-based stats. Identities = 46/233 (19%), Positives = 90/233 (38%), Gaps = 20/233 (8%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGD-TKVLCTASIEEGVPRFLKGQGQGWIT 60 R R+ ++ R V + K A GS +E+ + TKV+C+ + + G I Sbjct: 65 RQDNRTCDKFRNVFMQVGVIKQARGSAYMEYQNGTKVICSVYGPRQISARNEFSDIGAIQ 124 Query: 61 AEYGMLPR----STHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 EY + S + + +E + AL ++ L + I + C Sbjct: 125 CEYRVANFAYQSSNNQSTFLNNSSNNNRRHHVENSIHLREALEVSIRLDKYPKSVIDVYC 184 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLE 176 +LQ DG +A+I+ A +AL +A M MV+A + + G + D Sbjct: 185 FILQDDGSALSAAISCASLALANA-----------GIEMYDMVSACTTSELEGHIIVDPT 233 Query: 177 YVEDSAAETDMNVV-MTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 +E A M M+ ++ ++ + +++++ + L + L Sbjct: 234 NLEYKYASGGMVCAYMSNLNQVTQLSQVGD---MSYQKIGEAMDLCIDGCSKL 283 >UniRef50_Q01D77 Putative polynucleotide phosphorylase (ISS) n=1 Tax=Ostreococcus tauri RepID=Q01D77_OSTTA Length = 615 Score = 131 bits (331), Expect = 1e-29, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 53/148 (35%), Gaps = 8/148 (5%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQG 57 R GR+ VRP+ GS L G+T+ + A++ + ++ Sbjct: 428 RQDGRTTRMVRPIACEAGLLPRTHGSALFTRGETQAIGVATLGGNQDAQRVDDIEKTEDK 487 Query: 58 WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCD 117 Y P S G R + L RAL + + F ++ Sbjct: 488 RFMLHYFFPPSSVGE----TGRIGGASRREVGHGNLAERALTPIIPSQEEFPFVCRMEST 543 Query: 118 VLQADGGTRTASITGACVALVDALQKLV 145 + +++G + A++ +AL+DA L Sbjct: 544 ITESNGSSSMATVCAGTLALLDAGVPLK 571 Score = 52.3 bits (124), Expect = 1e-05, Method: Composition-based stats. Identities = 49/217 (22%), Positives = 77/217 (35%), Gaps = 33/217 (15%) Query: 13 PVTLTRN-YTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGW-ITAEYGMLPRST 70 V L A G+V+ GDT + TA R L G G +T Y S Sbjct: 81 RVRLETGRVGAQANGAVMASEGDTVIYATA----CASRELTGDGSFVPLTVNYS-ERFSA 135 Query: 71 HTRNAREAAK--GKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ----ADGG 124 R A K G R RL+ R +R + D VLQ DG Sbjct: 136 AGRTAGGFRKRDGAVSERETLKARLVDRPIRPMIPKG------WGYDTQVLQWLMSFDGE 189 Query: 125 TRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNG--EAVCDLEYVEDSA 182 T A+ + P+K V V VG++ G E + + + Sbjct: 190 RSTD---------ALAITAASAALAVSDIPLKKPVVGVRVGLMPGSDEPIVNPSQEQMKE 240 Query: 183 AETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLA 219 + D+ + T++ ++ ++G + T +E+L +A Sbjct: 241 SRLDLVLAGTDE-AVLMIEGFCDF--LTTDEMLRAIA 274 >UniRef50_B5XC68 Exosome complex exonuclease MTR3 n=2 Tax=Euteleostei RepID=B5XC68_SALSA Length = 277 Score = 131 bits (330), Expect = 2e-29, Method: Composition-based stats. Identities = 47/217 (21%), Positives = 79/217 (36%), Gaps = 29/217 (13%) Query: 2 RPAGRSNNQV--RPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQ-GW 58 R GR QV R V + A+GS +E G+TK++C R + + G Sbjct: 36 RVDGRQRGQVDVRSVFVRCGLISQAKGSAYIEAGNTKLICCVYGPRETERKDETDMKSGR 95 Query: 59 ITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDV 118 + + P S RE QG ++ ++ +LR V L+ I ++ V Sbjct: 96 LITDMRFAPFSC-----RERGSWIQGSDEKDLSLMLLESLRPGVCLQKYPRSQIEVNVMV 150 Query: 119 LQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYV 178 L+ DG ++T A +AL DA M +V S+ + D ++ Sbjct: 151 LENDGAVLAHAVTCASMALADA-----------GIEMYDLVLGCSIRQEGATYLIDPTFL 199 Query: 179 EDSAAET---------DMNVVM-TEDGRIIEVQGTAE 205 E++ + V +I +Q E Sbjct: 200 EENGCNLASGSRENLGSLTVAFLPSLNQISGLQSDGE 236 >UniRef50_UPI000180CDA2 PREDICTED: similar to Exosome complex exonuclease MTR3 (mRNA transport regulator 3 homolog) (Exosome component 6) n=1 Tax=Ciona intestinalis RepID=UPI000180CDA2 Length = 276 Score = 130 bits (328), Expect = 3e-29, Method: Composition-based stats. Identities = 46/183 (25%), Positives = 72/183 (39%), Gaps = 18/183 (9%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQ-GQGWIT 60 R GR Q R V L A+GS E TKV+C+ + + + Q +G + Sbjct: 35 RADGRYVTQPRDVFLQCGVITQAKGSAYFEMNKTKVICSVYGPKDIEMREEFQINKGKLK 94 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 E P S+ + G +E ++ A+ + V L+ + I + VL+ Sbjct: 95 CELKYAPYSSP-----KHGDHIPGASDVEKSDILLEAISSGVCLQRYPKSQIDVYVIVLE 149 Query: 121 ADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVN-GEAVCDLEYVE 179 DG A+IT A VALVDA M ++ A S+ I + D E Sbjct: 150 DDGSVMPAAITAASVALVDA-----------GIEMYDVITASSIRIAGQDTFIIDPTSSE 198 Query: 180 DSA 182 + + Sbjct: 199 EFS 201 >UniRef50_C1EDA5 Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1EDA5_9CHLO Length = 261 Score = 128 bits (323), Expect = 1e-28, Method: Composition-based stats. Identities = 51/227 (22%), Positives = 89/227 (39%), Gaps = 20/227 (8%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPR-FLKGQGQGWI 59 +R GR + R + ++GS + E G+TKVL R + + + + Sbjct: 9 LRLDGRRPKETRRMRCELTALPGSDGSAVFELGNTKVLAAVHGPHECRRPSERLEDRLLV 68 Query: 60 TAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVL 119 E M ST R R + E+ + R + V + L + + VL Sbjct: 69 KCEVSMAAFSTGERRRRTKGDRRTN----ELSTFVRRCIETCVSAELLARSQLDVSIQVL 124 Query: 120 QADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVE 179 QADGG R A++ A +A+VDA PM+ +A S G ++ + DL Y+E Sbjct: 125 QADGGVRAAAVNAAVLAIVDA-----------GIPMQDTMACCSAGYLDDTPLLDLNYME 173 Query: 180 DSAAETDMNVV-MTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 + +++V M + R++ + + + LA Sbjct: 174 EGGGGPEVHVAYMPQMDRVVAI---VTENKASVDVFERAHELALDGC 217 >UniRef50_UPI0001793368 PREDICTED: similar to Exosome complex exonuclease MTR3 (mRNA transport regulator 3 homolog) (Exosome component 6) n=1 Tax=Acyrthosiphon pisum RepID=UPI0001793368 Length = 279 Score = 128 bits (321), Expect = 2e-28, Method: Composition-based stats. Identities = 45/183 (24%), Positives = 77/183 (42%), Gaps = 16/183 (8%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +R GR + R + + A+GS +E G TK++C+ + VP ++ G + Sbjct: 40 VRCDGRDISAHRNLCIKTGIVTQAKGSAYLECGSTKLICSVFDPKEVPNKVEYAKTGELQ 99 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 E+ S R R + ++ + RAL A+ F I ++ VL+ Sbjct: 100 CEFKFATFSC--RQRRTYTR---DSEERQLCNELRRALEPAICRGEFANFEIHINVLVLE 154 Query: 121 ADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVED 180 DG A+IT A +AL+D PM ++ A S+GI + + D Y E+ Sbjct: 155 NDGSVLAAAITAAGLALMDGC-----------IPMYDVIVATSLGIYKNKILVDPTYDEE 203 Query: 181 SAA 183 + Sbjct: 204 TLC 206 >UniRef50_B0ERA1 Exosome complex exonuclease RRP41, putative n=2 Tax=Entamoeba RepID=B0ERA1_ENTDI Length = 238 Score = 126 bits (316), Expect = 6e-28, Method: Composition-based stats. Identities = 43/206 (20%), Positives = 76/206 (36%), Gaps = 20/206 (9%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR ++R + N+ ++GS V G+T V R + + + Sbjct: 10 RLDGRRTTEMRKCEMEINFLNTSDGSARVRMGNTIVEAVVFGPLEGRR--RNREGAELMV 67 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQA 121 Y +T R + +E L+ + + K L E I L ++Q Sbjct: 68 SYSQATFATRKRREQMH-----DRTMIETAELLKQMYEQVIITKLLPETMIDLRVQIMQD 122 Query: 122 DGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDS 181 DG A I +AL+DA PM +V+A G ++G+ V D+ E++ Sbjct: 123 DGSVTAAVINACTLALIDA-----------GIPMIDIVSAAEGGYIDGKMVVDMNKDEEN 171 Query: 182 AAETD--MNVVMTEDGRIIEVQGTAE 205 +M + G + +Q + Sbjct: 172 VGTVFNVHTAIMQKSGAVALLQTEGK 197 >UniRef50_B3S9X0 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens RepID=B3S9X0_TRIAD Length = 240 Score = 124 bits (311), Expect = 3e-27, Method: Composition-based stats. Identities = 37/181 (20%), Positives = 63/181 (34%), Gaps = 16/181 (8%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 MR + + A GS +E +TK++C V + + Q + Sbjct: 1 MRKDYQLPKFYDRLVCRTGAVSQAVGSAYIELRNTKIICAVYGPREVAKKQEFNIQATVA 60 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 E S R + Q + E ++I +AL+ V L + I + VLQ Sbjct: 61 CELKFATFSC-----RRRRRHIQDSQEKEYSQIIVQALQPVVRLDKYPKSQIDIFITVLQ 115 Query: 121 ADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVED 180 DG +IT A VAL D + + + + ++ D Y+E+ Sbjct: 116 NDGSVLGGAITAASVALAD-----------SGIEIFDVAIGCCLRQIGDLSLIDPTYLEE 164 Query: 181 S 181 Sbjct: 165 E 165 >UniRef50_B3T6G8 Putative 3' exoribonuclease family, domain 1 n=1 Tax=uncultured marine microorganism HF4000_APKG2H5 RepID=B3T6G8_9ZZZZ Length = 264 Score = 123 bits (310), Expect = 4e-27, Method: Composition-based stats. Identities = 47/238 (19%), Positives = 85/238 (35%), Gaps = 18/238 (7%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R +GR + R L AEGS V GDT V ++ VP + QG + Sbjct: 23 RHSGRGRWEARDTELEIGVLPRAEGSARVRMGDTIVYAGVKLQIMVP-YPDRPNQGGLMC 81 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAA--------VDLKALGEFTIT 113 + P + G ++E+ R++ R +R + + + + Sbjct: 82 SAEVRPVA-----GPNWEPGPPSPESIELGRVVDRGIRESGCIDVDGLCLIPGEKAWQVI 136 Query: 114 LDCDVLQADGGTRTASITGACVALVDALQKLVE---NGKLKTNPMKGMVAAVSVGIVNGE 170 LD + DG A A+ A+ +G+ + + S V G Sbjct: 137 LDLFAISDDGNLFDAFALAGIAAMRTAMIPEERFEISGEDRPLNISKTPIMCSYHKVGGR 196 Query: 171 AVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 V D + E+ + +++ + +DG + +Q FT E ++ A+ N L Sbjct: 197 FVYDADGREELGGDERIHITLGDDGHVHSLQK-GLRGIFTASEFTEIMEHAQSRCNEL 253 >UniRef50_UPI000186CF32 Exosome complex exonuclease RRP43, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186CF32 Length = 276 Score = 123 bits (308), Expect = 5e-27, Method: Composition-based stats. Identities = 52/243 (21%), Positives = 98/243 (40%), Gaps = 28/243 (11%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +RP GR+ ++ RP+++ N +A+GS +V+ G+T V+C +E P+ + QG++ Sbjct: 22 VRPDGRALDECRPISINVNSFHNADGSAIVKIGNTAVVCGVKLELAKPKA-ETPDQGYLI 80 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARAL--RAAVDLKALG------EFTI 112 + P + G E + + L +DLKAL + I Sbjct: 81 PNVDLPPLCSGQYQP-----GPPCDYAQEATKFVNEILLESQCIDLKALCIVPDRLAWVI 135 Query: 113 TLDCDVLQADGGTRTASITGAC----VALVDALQKLVENGKLKTNPMKG--------MVA 160 LD L DG A++ V + + VE+G+ NP+K ++ Sbjct: 136 YLDIICLNQDGNLLDAALAAGIAALKVTTLPEVIYNVESGEKVVNPLKRQQLNVKKLPLS 195 Query: 161 AVSVGIVNGEAVCDLEYVEDSAAETDMNVVM-TEDGRIIEVQGTAEGEPFTHEELLILLA 219 + + D E+S + +++V+ + G I + EP E+ + Sbjct: 196 TTIAVFKSDCLLIDPTVEEESFSSGTISIVIEADSGDICGIHQPGT-EPLKPSEIDFCIT 254 Query: 220 LAR 222 A+ Sbjct: 255 QAQ 257 >UniRef50_Q4P9I6 Putative uncharacterized protein n=1 Tax=Ustilago maydis RepID=Q4P9I6_USTMA Length = 273 Score = 123 bits (308), Expect = 6e-27, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 73/224 (32%), Gaps = 21/224 (9%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKH--AEGSVLVEFGDTKVLCTASIEEGVPRFLKG-QGQG 57 R GR ++R + + ++ A+G + G T V T + Sbjct: 12 FRIDGRKQFELRSIGIQLGGSQDTAADGCAQITQGLTIVSATVFGPREARSGANVMHDRA 71 Query: 58 WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCD 117 + E + P + R R + +E I + I + Sbjct: 72 SVNVEVSVAPWGSMERRRRNRGDRRL----VEFANSIKSTFEPVIHTHLYPRSQIDIFVQ 127 Query: 118 VLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEY 177 V Q DGG A+I + +AL+DA M+ VA+VS GI + A+ DL Sbjct: 128 VHQQDGGVLPAAINASTLALLDA-----------GIAMQDFVASVSCGIHSTSAMLDLSN 176 Query: 178 VEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALA 221 E+ V+ +I + E + LA Sbjct: 177 TEEQDLPHVTVAVLPRTKQITL---ASLETRLHVERFEQIFTLA 217 >UniRef50_A9VAY8 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9VAY8_MONBE Length = 629 Score = 121 bits (305), Expect = 1e-26, Method: Composition-based stats. Identities = 51/236 (21%), Positives = 89/236 (37%), Gaps = 37/236 (15%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI-EEGVPRFLK-------- 52 R GR ++V+ V N G+ L + G+T+V CTA++ + + L Sbjct: 355 RIDGRDFDEVQAVQAAINLYPELHGNSLFQRGETQVFCTATLGDRDAVKRLDEIEVAVAG 414 Query: 53 GQGQGWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTI 112 Q +Y + + R Q R L RAL +D E T+ Sbjct: 415 LSPQKSFFFDYEFPAYAINKIRVRRG----QMRRETGHGSLAERALGRMIDPGY--ENTV 468 Query: 113 TLDCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVN---- 168 + V + G + AS+ G +A++DA P++ VA +S G+V Sbjct: 469 RVTSQVTSSFGSSSMASVCGGSLAMMDA-----------GVPLRAPVAGLSCGLVGYTDE 517 Query: 169 ------GEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILL 218 + + DL+ ED D+ + T+ G + +Q E + + L + Sbjct: 518 EGQLTKYQLLTDLKGFEDIYGAMDLKMASTQSG-VNAIQFDTELRGISLDVLEEAM 572 Score = 46.5 bits (109), Expect = 6e-04, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 55/169 (32%), Gaps = 30/169 (17%) Query: 63 YGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQAD 122 ++P+S H R G + R + RL+ R+LR V +T+ QA Sbjct: 98 VNLIPKSFHRRE------GGERDRETLVARLVDRSLRPLVPSDVAASTQMTVKLLASQAR 151 Query: 123 GGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGI----------VNGEAV 172 SI A AL+ + G VAAV VG+ E + Sbjct: 152 MEPTVQSIEAASAALM-----------VSDISWHGPVAAVRVGVRKALEVASDDEPYELL 200 Query: 173 CDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALA 221 + ++ E + + + G V EG L L A Sbjct: 201 INPDHKETAECVGVLLYSGVQAG---AVMIDFEGAELPLPALKRALRAA 246 >UniRef50_A0D7C7 Chromosome undetermined scaffold_4, whole genome shotgun sequence n=1 Tax=Paramecium tetraurelia RepID=A0D7C7_PARTE Length = 227 Score = 121 bits (303), Expect = 2e-26, Method: Composition-based stats. Identities = 44/227 (19%), Positives = 83/227 (36%), Gaps = 22/227 (9%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR+ Q+R + +GS L + G T+V+C + Sbjct: 5 RQDGRNLQQMRNIEFKLAIDLSVDGSCLYKQGLTEVICLVQGPRAK------TQSELLLI 58 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQA 121 EY + P S K + + + L G+ I++ V+Q Sbjct: 59 EYSVSPFSNIESKRSS----KFDKDYSMFAENLKESFENLIILDENGKSEISISVCVIQN 114 Query: 122 DGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDS 181 DG +++A +AL+DA MK + +V+VG+ G + DL E Sbjct: 115 DGSSKSAVFNAITLALLDA-----------GVSMKDFLVSVTVGLDQGNLIVDLTQEESK 163 Query: 182 AAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 A+ ++ + + I+ + +E+ L LA +++ + Sbjct: 164 TAQGELTISYQSRKQKIDFY-ELKTLKLQQQEMDQLSKLAVSKADEI 209 >UniRef50_C4Q0C5 Ribonuclease pH related n=1 Tax=Schistosoma mansoni RepID=C4Q0C5_SCHMA Length = 258 Score = 121 bits (303), Expect = 2e-26, Method: Composition-based stats. Identities = 36/190 (18%), Positives = 73/190 (38%), Gaps = 15/190 (7%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEE-GVPRFLKGQGQGWIT 60 R GR N++R V + +++G V + G+TKV+ + + IT Sbjct: 10 RVDGRRPNEIRRVDCQFG-SGYSDGIVFLHQGNTKVIASVVGPHAPRVKGDGTPDGATIT 68 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 ++ P ++ + R+ + + + I + + I + +V+Q Sbjct: 69 CQFTKPPFASTSGERRKLSS--KDRSANDFATAIEEIFSCVIRTEKYPMSQIDIFLEVIQ 126 Query: 121 ADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVED 180 +DG ++ +AL DA M +V+A +VG+ DL E+ Sbjct: 127 SDGSEFACAVNATTLALTDA-----------GIEMDCLVSAATVGLWGSHVFADLCRFEE 175 Query: 181 SAAETDMNVV 190 + + + VV Sbjct: 176 NPRISQLTVV 185 >UniRef50_Q5BZN7 SJCHGC06185 protein (Fragment) n=1 Tax=Schistosoma japonicum RepID=Q5BZN7_SCHJA Length = 251 Score = 120 bits (300), Expect = 5e-26, Method: Composition-based stats. Identities = 38/190 (20%), Positives = 71/190 (37%), Gaps = 15/190 (7%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKG-QGQGWIT 60 R GR N++R V + +++G V + G+TKV+ + G I Sbjct: 3 RVDGRRPNELRRVHCQFG-SGNSDGIVFLHQGNTKVIASVVGPHAPRTKGDGNPDGATII 61 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 ++ P ++ + R+ A + I V + I + +V+Q Sbjct: 62 CQFTKPPFASTSGERRKVASN--DRSANDFSTAIEEIFSCVVRTEKYPMSQIDIFLEVIQ 119 Query: 121 ADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVED 180 +DG ++ +AL DA M +V+A +VG+ DL E+ Sbjct: 120 SDGSEFACAVNATTLALTDA-----------GIEMHYLVSAATVGLWGSRVFADLCRFEE 168 Query: 181 SAAETDMNVV 190 + + + VV Sbjct: 169 NPRLSQLTVV 178 >UniRef50_Q96B26 Exosome complex exonuclease RRP43 n=43 Tax=Metazoa RepID=EXOS8_HUMAN Length = 276 Score = 120 bits (300), Expect = 6e-26, Method: Composition-based stats. Identities = 46/240 (19%), Positives = 80/240 (33%), Gaps = 27/240 (11%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 RP GR + R T+ A+GS LV+ G+T V+C E P +G++ Sbjct: 23 RPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAAP-STDAPDKGYVVP 81 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRA--AVDLKALG------EFTIT 113 + P + + G G + IA + + + L + + Sbjct: 82 NVDLPPLCSSRFRS-----GPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLVWVLY 136 Query: 114 LDCDVLQADGGTRTASITGACVALVD-----------ALQKLVENGKLKTNPMKGMVAAV 162 D L DG A AL + V K ++ A Sbjct: 137 CDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSYLNIRTHPVAT 196 Query: 163 SVGIVNGEAV-CDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALA 221 S + + + D E+ A + +VM E+G++ + G T +L ++ A Sbjct: 197 SFAVFDDTLLIVDPTGEEEHLATGTLTIVMDEEGKLCCLHKPG-GSGLTGAKLQDCMSRA 255 >UniRef50_A2DCK7 3' exoribonuclease family, domain 1 containing protein n=1 Tax=Trichomonas vaginalis RepID=A2DCK7_TRIVA Length = 241 Score = 119 bits (299), Expect = 6e-26, Method: Composition-based stats. Identities = 46/229 (20%), Positives = 80/229 (34%), Gaps = 22/229 (9%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +R GR N++R V GS + G T+V+ G I Sbjct: 10 LRIDGRPPNEMRLVEAKIGTIPGCTGSSHFKIGQTEVIAQIFGPRD---NRSGDNAAEIR 66 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 + + A+ R E + ++ R A+ + I + V+Q Sbjct: 67 VTFEYADFA----KVPHASDTSMTRRGRESEVIMKRTFEEAIKRELFPHSKILIAITVIQ 122 Query: 121 ADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVED 180 DG ++A+I A +AL+DA PM V +++V + + + D E Sbjct: 123 DDGSCQSAAINAATLALIDA-----------GIPMFDFVVSMTVALYDDKCFLDAGRAES 171 Query: 181 SAAETDMNV-VMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 +A + V + I+ + TA EP + L+ A L Sbjct: 172 NARFPVLEVSIFPSTSEILSMNLTARIEPQASKNLMAA---AIDGCKEL 217 >UniRef50_UPI00005A29C6 PREDICTED: similar to Exosome complex exonuclease RRP41 (Ribosomal RNA processing protein 41) (Exosome component 4) (p12A) isoform 3 n=1 Tax=Canis lupus familiaris RepID=UPI00005A29C6 Length = 226 Score = 118 bits (296), Expect = 1e-25, Method: Composition-based stats. Identities = 43/179 (24%), Positives = 73/179 (40%), Gaps = 18/179 (10%) Query: 49 RFLKGQGQGWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALG 108 R + + +Y ST R R ++ E+ + + AA+ + Sbjct: 43 RARALPDRALVNCQYSSATFSTGERKRRPHG----DRKSCEMGLHLRQTFEAAILTQLHP 98 Query: 109 EFTITLDCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVN 168 I + VLQADGGT A + A +A++DA PM+ V A S G V+ Sbjct: 99 RSQIDIYVQVLQADGGTYAACVNAATLAVLDA-----------GIPMRDFVCACSAGFVD 147 Query: 169 GEAVCDLEYVEDSAAETDMNVV-MTEDGRIIEVQGTAEGEPFTHEELLILLALARGESN 226 A+ DL +VE++A + + + G+I ++ A E++L AR + Sbjct: 148 NTALADLSHVEEAAGGPQLALALLPASGQIALLEMDARLHEDHLEQVLEA--AARAARD 204 >UniRef50_Q5CPV0 Archeo-eukaryotic exosomal RNAse n=2 Tax=Cryptosporidium RepID=Q5CPV0_CRYPV Length = 351 Score = 118 bits (295), Expect = 2e-25, Method: Composition-based stats. Identities = 40/218 (18%), Positives = 78/218 (35%), Gaps = 37/218 (16%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHA---EGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQG 57 +R GR ++R + N +G+V E G K++ + + + Sbjct: 98 IRQDGRKLTEIRRIKCIINEGNQRGIEDGNVYFEQGQNKLIVSIVGPVPISGNINYTNNN 157 Query: 58 ---WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITL 114 I + + P S+ R R GK +E +I+R + + + I + Sbjct: 158 SGVQINCNFRVSPFSSQDRRKR----GKNDRFCIESGLIISRTFSSVIC-DQYSKSQIII 212 Query: 115 DCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCD 174 + +L+ DG R+A+I +AL + MK ++ + + G+ + + D Sbjct: 213 NIIILEGDGSVRSAAINATSIALA-----------ISGISMKDLIVSATCGLYGKQVLYD 261 Query: 175 LEYVE---------------DSAAETDMNVVMTEDGRI 197 L E D+ +TD V + I Sbjct: 262 LTQSEMESLKGTLLMAIHSTDNDIDTDTENVGNGNSDI 299 >UniRef50_D2VA88 Predicted protein n=1 Tax=Naegleria gruberi RepID=D2VA88_NAEGR Length = 280 Score = 118 bits (295), Expect = 2e-25, Method: Composition-based stats. Identities = 44/212 (20%), Positives = 78/212 (36%), Gaps = 35/212 (16%) Query: 1 MRPAGRS-NNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWI 59 +R R +NQ+R + + A+GSV G+T V+C+ E + Q I Sbjct: 6 LRRDQRKTSNQLRDMQVELGVLGKADGSVKFSQGNTTVICSVCGPESSMKEKG--DQAII 63 Query: 60 TAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVL 119 + + K E + +I + L + IT+ V+ Sbjct: 64 DVMF-------------QPRDKKASEEEKEYELIIRQTLENVILTNIYPRTVITISIQVV 110 Query: 120 QADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVN-GEAVCDLEYV 178 Q DG +AS+ A +AL+DA MK + + S +N G+ + D + Sbjct: 111 QYDGCLLSASLNAASLALLDA-----------GVAMKTTLVSSSCSYLNSGDCLLDPTRI 159 Query: 179 EDSAAETDMNVVM--TEDGRIIEVQGTAEGEP 208 E D + ++ + I+ T+ P Sbjct: 160 EQ-----DFSSILHNDDSSSYIQYYKTSSKGP 186 >UniRef50_Q55BB0 Putative uncharacterized protein n=1 Tax=Dictyostelium discoideum RepID=Q55BB0_DICDI Length = 217 Score = 116 bits (292), Expect = 4e-25, Method: Composition-based stats. Identities = 45/216 (20%), Positives = 79/216 (36%), Gaps = 22/216 (10%) Query: 16 LTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTHTRNA 75 + GS VE +TKVLCT + + + E S+ T Sbjct: 1 MKIGVVSQGSGSSYVEMENTKVLCTIHGPRATQKTELFE-TAKLNCELKYTTFSSTTEKI 59 Query: 76 REAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTASITGACV 135 K ++ LI++++ ++ L+ + I + VL DG ASIT A + Sbjct: 60 DYVENSK----EKDLSLLISQSIIGSIRLEKYPKTAIDIYILVLNDDGNVLVASITAATM 115 Query: 136 ALVDALQKLVENGKLKTNPMKGMVAAVSVGIV-NGEAVCDLEYVEDSAAETDMNVV--MT 192 AL DA M MV++ SV + + D +E++ + +V M Sbjct: 116 ALADA-----------GVEMFDMVSSCSVSCTKDNRTLIDPTTLEETIPSSSTVLVAKMP 164 Query: 193 EDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 I ++ T E + +L + L + + Sbjct: 165 SLNEITQIIQTGE---LQYTNVLECVDLCIDGCDKI 197 >UniRef50_D2V2H2 Predicted protein n=1 Tax=Naegleria gruberi RepID=D2V2H2_NAEGR Length = 289 Score = 116 bits (290), Expect = 6e-25, Method: Composition-based stats. Identities = 49/256 (19%), Positives = 82/256 (32%), Gaps = 39/256 (15%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGD-TKVLCTASIEEGVPRFLKGQGQGWI 59 MR GR+ R +L GS V+ + T VL +E G QG + Sbjct: 20 MRNDGRARLDYRDFSLETGIVSQTNGSARVKLANHTDVLVGVKVEIGEVDQ-DFPDQGRL 78 Query: 60 TAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRA------AVDLKALGE---- 109 P + + R A EI + LR AVD L Sbjct: 79 EVHVECSPSANNEFEGRGAE---------EINAELISTLRNQLKNSFAVDWTKLCIVKGK 129 Query: 110 --FTITLDCDVLQADGGTRTASITGACVALVDALQKLVENGKLKT--------------- 152 + + +DC VL + G A AL + +E ++ Sbjct: 130 QCWILYVDCIVLDSAGNLFDALAIATRAALYNTRIPKIEVMEISPTETEFEVSDDPHEYS 189 Query: 153 -NPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTH 211 + +V++G + + + D E+ M V + + G I ++ + + Sbjct: 190 RIDCSNIPISVTLGKIGSKFIVDPSLEEEECISNRMTVSVNKKGHICSIKKSGKDSGVNP 249 Query: 212 EELLILLALARGESNP 227 EL +L AR + Sbjct: 250 SELTKMLQTARKIGST 265 >UniRef50_Q4SQL7 Chromosome 17 SCAF14532, whole genome shotgun sequence. (Fragment) n=1 Tax=Tetraodon nigroviridis RepID=Q4SQL7_TETNG Length = 556 Score = 115 bits (289), Expect = 9e-25, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 51/130 (39%), Gaps = 14/130 (10%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIE--------EGVPRFLKG 53 R GR +R ++ + K GS L + G T+VL + + + + + L G Sbjct: 305 RCDGRELTALRNISCEVDLFKPLHGSALFQRGQTQVLSSVTFDSLESSVKADIITTALSG 364 Query: 54 QGQGWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTIT 113 Y P +T+ R + L +ALR+ + + FTI Sbjct: 365 IKDKNFMLHYEFPPYATNE----TGKVAGLNRRELGHGALAEKALRSVIPKE--FPFTIR 418 Query: 114 LDCDVLQADG 123 + +VL+++G Sbjct: 419 VTAEVLESNG 428 Score = 80.8 bits (198), Expect = 3e-14, Method: Composition-based stats. Identities = 39/202 (19%), Positives = 78/202 (38%), Gaps = 27/202 (13%) Query: 12 RPVTLTRNYTKH-AEGSVLVEFGDTKVLCTA--SIEEGVPRFLKGQGQGWITAEYGMLPR 68 R + ++ A+GS +V+ G+T V+ TA + +F+ + +Y Sbjct: 1 RKLEISSGRLARFADGSAVVQLGETSVMVTAVSKTKPSPSQFMP------LVVDYRQKAA 54 Query: 69 STHTRNAREAAKGKQG--GRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADG--G 124 + R + + G + RLI R++R + + C++L DG Sbjct: 55 AAG-RIPTNYLRRELGTTDNEILTSRLIDRSVRPLFPAGYFYDTQ--VLCNLLAVDGVND 111 Query: 125 TRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAE 184 +I L P G + AV VG+V+GE + + E S++ Sbjct: 112 PDVLAIN-----------AASAALALSDIPWNGPIGAVRVGLVDGELLINPTRAEMSSST 160 Query: 185 TDMNVVMTEDGRIIEVQGTAEG 206 ++ V +++ ++ +AE Sbjct: 161 LNLVVSGGPSSQVVMIEASAEN 182 >UniRef50_B2AAV3 Predicted CDS Pa_1_5280 n=11 Tax=Leotiomyceta RepID=B2AAV3_PODAN Length = 277 Score = 115 bits (288), Expect = 1e-24, Method: Composition-based stats. Identities = 47/250 (18%), Positives = 80/250 (32%), Gaps = 40/250 (16%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKG------- 53 +R GR N++R + A+GS +E G TKV+C + G Sbjct: 13 LRVDGRRWNELRRIHGQIRTQAAADGSSYLEMGHTKVMCVVTGPSEPGPRRGGAAGGASG 72 Query: 54 -------QGQGWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKA 106 + + S+ R R + T+E+Q ++ L A + Sbjct: 73 GAGSGGQSKDAEVVVNIVIAGFSSVDRKRRGRGDKR----TLEMQFTLSNTLAATLHTHL 128 Query: 107 LGEFTITLDCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGI 166 I + VL DG A I A +A VDA PM V A + G Sbjct: 129 FPHSQINISLHVLSQDGSLLAALINAATLACVDA-----------GIPMTDYVTACTAGS 177 Query: 167 VNG--------EAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILL 218 + + + DL + E+ + E +++ + L +L Sbjct: 178 TSTYAANDEGADPLLDLNHQEEQELPGLTVATLGESDKVVAL---VCESRVQISRLEGML 234 Query: 219 ALARGESNPL 228 A+ + Sbjct: 235 AVGVDGCKQV 244 >UniRef50_C5KIM5 Exosome complex exonuclease RRP41, putative n=2 Tax=Perkinsus marinus ATCC 50983 RepID=C5KIM5_9ALVE Length = 248 Score = 114 bits (285), Expect = 3e-24, Method: Composition-based stats. Identities = 48/238 (20%), Positives = 84/238 (35%), Gaps = 33/238 (13%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVP--------RFLK 52 R GR N++R +TL A+GS ++ G TKV+ + + Sbjct: 13 FRLDGRRPNELRHLTLKIGDAPSADGSATLQQGLTKVVAHVFGPRPLQAASVGRAAGTMA 72 Query: 53 GQGQGWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTI 112 QG+ + Y +T R R R + +QR+I A V + + I Sbjct: 73 RQGEAIVNVVYRTSSFATIDRKRRTTGDRNSTERQLWLQRIIQDA----VLTEMFPKSCI 128 Query: 113 TLDCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGE-A 171 + +LQ DG + P+K M +A +VG+VN + Sbjct: 129 DVHLTILQEDGSALA-----------ACVNAAAAALVDAGIPIKDMFSACTVGLVNNQKP 177 Query: 172 VCDLEYVE-DSAAETDMNVVM---TEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 + DL + E + + V + ++ + ++G E F LA + Sbjct: 178 IVDLNHAESEGCGGAVVTVAVYQRRKELNYLCLEGKINIESF-----ESAADLAIEGA 230 >UniRef50_B6HC09 Pc18g05170 protein n=25 Tax=Leotiomyceta RepID=B6HC09_PENCW Length = 265 Score = 113 bits (284), Expect = 4e-24, Method: Composition-based stats. Identities = 38/183 (20%), Positives = 69/183 (37%), Gaps = 18/183 (9%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQ---GQG 57 +R GR N++R + + + GS + G+T ++C+ R G G Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTSIMCSVHGPAEGRRGDGGSAGSGHA 73 Query: 58 WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCD 117 + + + + R R +Q R I + A ++ + TI++ Sbjct: 74 VVEVDVNVAGFAGVDRKRRAGGSDRQSSR---IATTLRSAFQSHLHTYLYPHSTISIHVS 130 Query: 118 VLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVC-DLE 176 VL ADG A++ +ALVDA PM G++ + G+ + D Sbjct: 131 VLSADGSLLAAALNACTLALVDA-----------GIPMPGLLCGCTSGMSGSASTPRDPR 179 Query: 177 YVE 179 + E Sbjct: 180 HDE 182 >UniRef50_A8PXC4 Putative uncharacterized protein n=1 Tax=Malassezia globosa CBS 7966 RepID=A8PXC4_MALGO Length = 253 Score = 112 bits (281), Expect = 9e-24, Method: Composition-based stats. Identities = 41/200 (20%), Positives = 72/200 (36%), Gaps = 24/200 (12%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +RP GR + RP+ L A GS L+E G TK++C+ V R G+ + Sbjct: 20 VRPDGRKAEEPRPLYLQTGIIPSASGSTLLESGHTKIVCSVHGPRQV-RGRHYAGKAEVN 78 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 ++ M P S R + + LI +AL A+ L L + +I + VL Sbjct: 79 VQFEMAPFSEKERRSSRDTEAPVP------AALIQQALLPAIRLDLLPKSSIDVHITVLD 132 Query: 121 ADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEA--------- 171 +D S+ G M G+V + ++ Sbjct: 133 SD-----TSMLGCA---AMGATAASAALAEAGVQMLGLVTGATATAISTLPSTNKAQQLW 184 Query: 172 VCDLEYVEDSAAETDMNVVM 191 + D + E + + + + + Sbjct: 185 LVDPTHREYADSHSHLMICG 204 >UniRef50_B6KQ03 3' exoribonuclease, putative n=3 Tax=Toxoplasma gondii RepID=B6KQ03_TOXGO Length = 303 Score = 112 bits (280), Expect = 1e-23, Method: Composition-based stats. Identities = 50/239 (20%), Positives = 81/239 (33%), Gaps = 36/239 (15%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR ++R + + + A GS V G TK+ C + Q +G I Sbjct: 47 RHDGRRFEEMRAMCMQTHSLAAAAGSAFVSVGKTKLNCAVYGPRPNMKHA-SQDRGSINL 105 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQA 121 E+ P +T T + L+ +AL A V L + TI + VL+ Sbjct: 106 EFRFAPFATT------GKDACSERDTAHLTTLLHQALNAVVRLDLYAKSTIAVSVLVLED 159 Query: 122 DGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVN---------GEAV 172 DGG +A++T +AL DA M +V S + + + Sbjct: 160 DGGLISAALTCIGLALADA-----------GIEMLDVVTGASACVFSVGHPDSPPRTCVL 208 Query: 173 CDLEYVEDSAAETDMNVVMTEDG------RIIEVQGTAEGEPFTHEELLILLALARGES 225 D + E+ A D N + G + + + E +L L Sbjct: 209 LDPD-AEERRAFADKNCTFVDLGYCPALASVCFIHASGTL--LATESGEQMLRLCEAAC 264 >UniRef50_B6ACS1 3' exoribonuclease protein, putative n=1 Tax=Cryptosporidium muris RN66 RepID=B6ACS1_9CRYT Length = 295 Score = 111 bits (279), Expect = 1e-23, Method: Composition-based stats. Identities = 42/240 (17%), Positives = 93/240 (38%), Gaps = 19/240 (7%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +R R N+VRP+ + +GS G T+VLCT + + L G +T Sbjct: 45 IRNDSRIPNEVRPINIKTGTVATCDGSAYFSIGRTRVLCTINGPKLTKSSLNEIGLS-VT 103 Query: 61 AEYGMLPRSTHTRNAREAAKGKQG----GRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 +Y + P R K + + +++ + + +I Sbjct: 104 VDYRLSPFCKKMRQYGNINKSNLNTDYKAEEKYQSLTLEKVIQSIICREKYTRMSIDCYI 163 Query: 117 DVLQADGGTRTASITGACVALVDALQKLV---ENGKLKTNPMKGMVAAVSVGIVNGEAVC 173 +++ DG +A+I+ +AL DA +++ + + P V + Sbjct: 164 YIIEDDGCALSAAISCLSLALCDAKIEIIGLFSSVTVIAIPNNSEV----KSDCKYICIL 219 Query: 174 DLEYVE---DSAAETDMNVVM-TEDGRIIEVQGTAEGEPFTHEELLILL-ALARGESNPL 228 D Y E +++ +++++ + T +++ + +A+G F + L+ +LA + Sbjct: 220 DPTYDEINLENSNISELSIGLCTLRNQVVHL--SAKGSAFGDIQTSKLMFSLAEAACTAI 277 >UniRef50_D2A0W4 Putative uncharacterized protein GLEAN_08282 n=3 Tax=Endopterygota RepID=D2A0W4_TRICA Length = 271 Score = 111 bits (278), Expect = 2e-23, Method: Composition-based stats. Identities = 46/238 (19%), Positives = 87/238 (36%), Gaps = 27/238 (11%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +RP GR + RP+ + A+GS + + G T V+C E P+ + +G++ Sbjct: 22 IRPDGREFGEYRPIVVNLGSISTADGSAIAKVGRTTVVCGIKAELCQPKA-EAANEGFLI 80 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRA--AVDLKALG------EFTI 112 + P + G + +L+A L+ +DLK L + + Sbjct: 81 PNVELPPLCSSKFRP-----GPPTEQAQVATQLVADILKNSDCLDLKTLCIFPDKLAWCL 135 Query: 113 TLDCDVLQADGGTRTASITGACVALVDALQKLVENG-----------KLKTNPMKGMVAA 161 D L DG A + AL V+ + K + A Sbjct: 136 YADLICLDLDGALIDACVVALMAALKSVTLPAVQYDPALDNKQVNVQERKALSVTNTPIA 195 Query: 162 VSVGIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLA 219 + + + + + D E+ + + + +V+ E+ + V G FT E+LL + Sbjct: 196 TTFAMFDDKILIDPTVDEEDLSTSLVTIVVKEE-ELCFVHKPG-GCVFTEEQLLKCVE 251 >UniRef50_Q54Q83 Putative uncharacterized protein n=1 Tax=Dictyostelium discoideum RepID=Q54Q83_DICDI Length = 237 Score = 110 bits (275), Expect = 4e-23, Method: Composition-based stats. Identities = 45/226 (19%), Positives = 76/226 (33%), Gaps = 26/226 (11%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR N +RPV + A+GS +KVL V K + Sbjct: 7 RNDGRCENSIRPVESEQGSLNKADGSAKFSQDKSKVLAAVYGPIEVNSARKEKILKS-YV 65 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQA 121 E P A G E + LI A+ + + I++ V Sbjct: 66 EVTFTP-----------AFGNTNYIDKEKELLIKNAVESMILTTLYPRTQISVILQVFSD 114 Query: 122 DGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVG-IVNGEAVCDLEYVED 180 DG + +I AC+AL+DA M G++ +V++ +G D E+ Sbjct: 115 DGSIVSCAINAACLALLDA-----------GIEMNGLLGSVTLCFNNDGSIYVDPSTEEE 163 Query: 181 SAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESN 226 + ++ + + I + T T ++ L A + Sbjct: 164 NQSKAIAIYSFSSINKNIVLSKTI--GTLTEDQYFKGLDKASESCD 207 >UniRef50_C1E4G7 Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1E4G7_9CHLO Length = 232 Score = 110 bits (275), Expect = 4e-23, Method: Composition-based stats. Identities = 44/178 (24%), Positives = 71/178 (39%), Gaps = 19/178 (10%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQ--GQGWI 59 R GRS Q+RP+ + A GS VE TKV+C + +G + Sbjct: 5 REDGRSAEQMRPIFVKTGVISQAAGSAYVELDKTKVMCGVYGPRQGGPGIDKVEFDRGRL 64 Query: 60 TAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVL 119 + + +T + K QG E ++ RAL AV + + T+ + VL Sbjct: 65 DVDVKLATFAT----SGPRGKVAQGDAEREFSSIVHRALSGAVMTETFPKTTVDVFATVL 120 Query: 120 QADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNG--EAVCDL 175 +A+G A+I A AL +A M+ +V+A + G +G + D Sbjct: 121 EANGSELCATIAAASAALCEA-----------GVAMRDLVSACTGGGADGPNALLLDP 167 >UniRef50_C7SB59 Exosome component 9 n=1 Tax=Platynereis dumerilii RepID=C7SB59_PLADU Length = 530 Score = 109 bits (273), Expect = 6e-23, Method: Composition-based stats. Identities = 45/226 (19%), Positives = 79/226 (34%), Gaps = 31/226 (13%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 MR GR R + + + G V G T V+ S E P+ + +G + Sbjct: 117 MRLDGRGCYDYRRIKIQFGIDR---GCCQVHLGKTIVMAQTSCEVTTPKQTR-PSEGNVF 172 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRA--AVDLKALG------EFTI 112 + P + A G+Q +E+ R++ R ++ VD ++L +TI Sbjct: 173 VNVELSPMAAPHFEA-----GRQSDAGVELTRILERCIKESRCVDTESLCIMSGVKVWTI 227 Query: 113 TLDCDVLQADGGTRTASITGACVALV------------DALQKLVENGKLKTNPMKGMVA 160 +D VL +G A+ A +LV D +E+ + M Sbjct: 228 RVDVHVLNHNGNLIDAASIAAISSLVHFRRPDVSVSGEDVTIHSLEDRDPIPLSVHHMPI 287 Query: 161 AVSVGIV--NGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTA 204 V+ + D E++ + + V M + I Q T Sbjct: 288 CVTCAFYHKGTYLLIDPTDKEENVMDGKVIVGMNKHREICTFQLTG 333 >UniRef50_C1M111 Exosome complex exonuclease rrp42 (Ribosomal rna processing protein 42), putative n=2 Tax=Schistosoma RepID=C1M111_SCHMA Length = 254 Score = 109 bits (272), Expect = 9e-23, Method: Composition-based stats. Identities = 48/224 (21%), Positives = 89/224 (39%), Gaps = 33/224 (14%) Query: 4 AGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEY 63 GR ++ RP+ + N HA GS + G+T ++C +E G P L +G I Sbjct: 2 DGRGPSEYRPLEIETNILSHATGSASIRIGETFIVCCVKMEVGKP-SLTNTSEGRIEINV 60 Query: 64 GMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLK--ALGE---------FTI 112 P +TH N + A+ E++ + L++A LK L + I Sbjct: 61 ECYPTATHRCNEKAAS---------ELEERLKTTLQSAYQLKFIDLSPLCIQRGRQCWVI 111 Query: 113 TLDCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAA----------- 161 +D +L+ G AS AL++A Q + N + + A Sbjct: 112 YIDLLILEGAGNLLDASSLVVKAALLNATQLNSLLLSVFQNNSESLEAGVQQFHGDMLPL 171 Query: 162 -VSVGIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTA 204 ++V + + D E++ + + +++V+ DG I ++ Sbjct: 172 FITVHKIGKAYLIDASKEEEACSLSRLSLVIYPDGSIGSLEQDG 215 >UniRef50_Q1HPJ2 MRNA transport regulator 3 n=1 Tax=Bombyx mori RepID=Q1HPJ2_BOMMO Length = 268 Score = 109 bits (272), Expect = 9e-23, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 59/174 (33%), Gaps = 15/174 (8%) Query: 16 LTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTHTRNA 75 + A+GS VE TKV+C+ +P + + G + E P S R Sbjct: 19 ARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEFRQLGQLYCEVKFAPFSCP-RKR 77 Query: 76 REAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTASITGACV 135 R + + +AL AV ++ I + +L+ DG Sbjct: 78 RPYV---PDVEEKALSVALRQALEPAVCRHFFPDYQIDVLIYILEHDGSCLA-------- 126 Query: 136 ALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNV 189 A+ PM ++ + SV ++ + D +E+ A+ V Sbjct: 127 ---AAINAAGLALANAAVPMFDIITSCSVAVIGHQMFIDPPEIEEHIAKNSTEV 177 >UniRef50_UPI000192764A PREDICTED: similar to Exosome component 8 n=1 Tax=Hydra magnipapillata RepID=UPI000192764A Length = 272 Score = 109 bits (272), Expect = 1e-22, Method: Composition-based stats. Identities = 45/247 (18%), Positives = 93/247 (37%), Gaps = 30/247 (12%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +RP GR+ ++ R + N K A GS LV G+T V+C V FL Sbjct: 22 IRPDGRALDEYRKTIVNINSIKTASGSGLVRIGNTIVVCGIK---AVSLFLNFCLPNV-- 76 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAA--VDLKALGE------FTI 112 + +H G + + +L+A + ++LK L + I Sbjct: 77 PNVDLPALCSHEFRP-----GPPSDQAQAMSQLVAETVENCKLINLKKLCIKEKKLCWVI 131 Query: 113 TLDCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNP-----------MKGMVAA 161 D + DG A I +AL++ +V + +P + +++ Sbjct: 132 YADIICISHDGNLIDAIIASLYIALLNTKLPVVTINEETGSPEASPTEQFTLELTTRLSS 191 Query: 162 VSVGIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALA 221 +V +++ + + D Y E+ + + + +++ ++ II + G + + + A Sbjct: 192 TTVELIDNKLLVDPTYEEEQLSLSSLTIILGDEKNIISMYKPG-GCSVNEDSVRTCIKYA 250 Query: 222 RGESNPL 228 + L Sbjct: 251 IHRAEEL 257 >UniRef50_Q0IT44 Os11g0311300 protein (Fragment) n=11 Tax=Magnoliophyta RepID=Q0IT44_ORYSJ Length = 300 Score = 108 bits (270), Expect = 2e-22, Method: Composition-based stats. Identities = 54/262 (20%), Positives = 93/262 (35%), Gaps = 45/262 (17%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +RP R + RP T+ A GS LV GDT +L + +E P + +G I Sbjct: 33 VRPDARRPAEARPTTVALAAVSSAHGSALVRLGDTAMLASIKLEVMSPSG-EAPDEGSIA 91 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVD------LKALG------ 108 E+ M P + GR E+ +I++ L + LK L Sbjct: 92 VEFHMPPICSPLVRP---------GRPAEVAPVISKNLEDILMSSGMLNLKELCLISGKA 142 Query: 109 EFTITLDCDVLQADGGTRTASITGACVALVDALQKLVENG-------------------- 148 + LD L ADG A++ A A LV G Sbjct: 143 SWLAYLDVYCLNADGSLFDAALISAVAAFTHLEIPLVSVGDDGRVFTVGGNEGKAKYELV 202 Query: 149 --KLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEG 206 + + + + +++ + + D E+S ET + +V+ +I+ +Q G Sbjct: 203 NREKRKLTITNVPFSLTCALHKDNVLADPTAEEESIIETSVTIVLDSSDQIVSIQKPG-G 261 Query: 207 EPFTHEELLILLALARGESNPL 228 + + ++LA+ L Sbjct: 262 AVTSMTTIKECISLAKDRRRKL 283 >UniRef50_Q17NN4 Exosome complex exonuclease rrp43 (Ribosomal RNA processing protein 43) n=5 Tax=Nematocera RepID=Q17NN4_AEDAE Length = 274 Score = 107 bits (268), Expect = 3e-22, Method: Composition-based stats. Identities = 46/244 (18%), Positives = 89/244 (36%), Gaps = 28/244 (11%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +RP GR +RP+ + + K A+GS +V+ G+T V+C E P+ ++ G++ Sbjct: 23 IRPDGREIGDLRPLAINFDSIKTADGSAIVKIGNTTVVCGIKAELAPPKPVE-PDTGYLV 81 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARAL--RAAVDLKALG------EFTI 112 + P S+ G +A A+ V+LK L + + Sbjct: 82 PNIEISPLSSPKYRP-----GPPSEEAQVYSCSLADAILNSGCVNLKDLCITKEQLVWAL 136 Query: 113 TLDCDVLQADGGTRTASITGACVALV------------DALQKLVENGKLKTNPMKGMVA 160 D L DG AS+ AL +++ E+ + + + Sbjct: 137 YCDLVCLDHDGCIFDASVIALVAALHTLRLPPVKHNPDTDEREVDEDAERIPLKLNSIPV 196 Query: 161 AVSVGIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLAL 220 S + G + D E++ A + + + + + + + G+P E L + Sbjct: 197 TTSFAVFGGRIIADPTAEEEALATSTITITICDSTLSY-INKSG-GDPLEQELLDKCIEN 254 Query: 221 ARGE 224 A Sbjct: 255 AMKR 258 >UniRef50_A7AQY6 Exosome complex exonuclease rrp41, putative n=1 Tax=Babesia bovis RepID=A7AQY6_BABBO Length = 259 Score = 107 bits (267), Expect = 3e-22, Method: Composition-based stats. Identities = 40/203 (19%), Positives = 77/203 (37%), Gaps = 29/203 (14%) Query: 1 MRPAGRSNNQVRPVTLTRNY-----TKHAEGSVLVEFGDTKVLCTASIEEGVPR------ 49 +R GR ++VR + + + +G V G TKV + + R Sbjct: 12 LRIDGRRPSEVRHIDILCGPECGVDIINYDGVAQVTQGLTKVQAFINGPTDIGRSKTKEG 71 Query: 50 FLKGQGQGWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGE 109 F I E + + R++ + T+EI R + + Sbjct: 72 FETADSPVEIRCEVCIP-------SERKSMGHRNNDATVEISRAVVGTFEPVIISHLYKN 124 Query: 110 FTITLDCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNG 169 TI + +VL+ADGG + I +AL+DA MK ++ A + ++N Sbjct: 125 STIHIFVNVLEADGGVKATVINAVLIALIDA-----------GIAMKDIIVACTAVMLNE 173 Query: 170 EAVCDLEYVEDSAAETDMNVVMT 192 + D +E +A+ ++ + ++ Sbjct: 174 TLLIDPNQLEINASIMELTLALS 196 >UniRef50_A7RZV7 Predicted protein n=2 Tax=Eumetazoa RepID=A7RZV7_NEMVE Length = 232 Score = 107 bits (267), Expect = 3e-22, Method: Composition-based stats. Identities = 38/216 (17%), Positives = 75/216 (34%), Gaps = 27/216 (12%) Query: 10 QVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRS 69 ++R + A+GS GDT+V+ A V + + T E P Sbjct: 14 ELRAMFCEHGLLDKADGSSKFAQGDTQVMAAAYGPVEVKLNKELIDRA--TLEVIFRP-- 69 Query: 70 THTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTAS 129 G G ++ +I + V ++T+ V+Q G + + Sbjct: 70 ---------KIGIPGCSEKLVEGIIRNSCEPIVLTALHPRASLTIVVQVVQNSGSLLSCA 120 Query: 130 ITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGI-VNGEAVCDLEYVEDSAAETDMN 188 + AC+A++DA PM+ M+ ++ I E V D ++ A + Sbjct: 121 VNAACLAMMDA-----------GFPMRCMMCGITCAITEQDELVLDPTLEQERKATAVLT 169 Query: 189 VVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGE 224 V + + ++ F ++ LA ++ Sbjct: 170 FVFDSVNQNLLT--SSTKGSFDVDQYNKCLAASKAA 203 >UniRef50_B4Q1V5 GE15642 n=8 Tax=Drosophila RepID=B4Q1V5_DROYA Length = 415 Score = 107 bits (267), Expect = 3e-22, Method: Composition-based stats. Identities = 51/250 (20%), Positives = 96/250 (38%), Gaps = 34/250 (13%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAE-GSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 R GR +N+ R V LT A+ G+V V GDTKVL + + G P + +G + Sbjct: 29 RFDGRRSNECRDVELTFG----ADWGTVAVSMGDTKVLTHVTCDMGAPATSR-PNEGKLQ 83 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAA--VDLKALGE------FTI 112 + + + R++ + L+ R R++ VDL++L + I Sbjct: 84 LNVNL-----GGVAFLDEVQTTHDQRSLTLNSLLERTFRSSRSVDLESLCVAAEQHVWCI 138 Query: 113 TLDCDVLQADGGTRTASITGACVALV----------DALQKLVENGKLKTNPM--KGMVA 160 +D +VL DG AS AL+ D ++ + + P+ Sbjct: 139 RVDVNVLNHDGNLYDASTIATLAALMHFRRPDVTFTDDELRIYTEKEREFIPLLFLHYPV 198 Query: 161 AVSVGIV--NGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILL 218 +V+ I +G+ + D +E++AA++ + + + + P ++ Sbjct: 199 SVTYCIYKSSGQPIVDPTLLEENAADSVIVLSFNSYQELCSLNAGGT-APTNVRTIMQCA 257 Query: 219 ALARGESNPL 228 A L Sbjct: 258 RNAATRCKSL 267 >UniRef50_D2VE23 3' exoribonuclease domain-containing protein n=1 Tax=Naegleria gruberi RepID=D2VE23_NAEGR Length = 367 Score = 106 bits (265), Expect = 6e-22, Method: Composition-based stats. Identities = 47/256 (18%), Positives = 93/256 (36%), Gaps = 32/256 (12%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKH----AEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQ 56 +R GR R + + + G V V G+T L S P ++ + Sbjct: 58 LRIDGRDLYDYRSIEFSLPTSSQELAVPSGQVQVTLGNTIALGIVSCSIMEP-YMDRPNE 116 Query: 57 GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAA--VDLKALG------ 108 G++T + + +R +Q +EI R+I R+LR + +D +AL Sbjct: 117 GFLTFQIDFS--TVGSRPIGTKQTSQQRELCIEIGRVIDRSLRGSRSIDTEALCIIAGRK 174 Query: 109 EFTITLDCDVLQADGGTRTASITGACVALVDALQKL------------VENGKLKTNPMK 156 +++ +D +LQ DG A AL+ + V++ + + Sbjct: 175 VWSLRVDVHILQDDGNVFDCCHLAAVAALLHFKRPEVTIEGDRVVVHTVQDRQPVPLSVH 234 Query: 157 GMVAAVSVGIVNGEA----VCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHE 212 + S + ++ V D E+ AE M + + + +Q G T + Sbjct: 235 HIPICTSFSFFDHDSATLFVVDPCKKEEMIAEGFMTIALNAHKELCAIQKGG-GLALTKD 293 Query: 213 ELLILLALARGESNPL 228 ++L + +S + Sbjct: 294 QILECAQIGSVKSKEI 309 >UniRef50_B0CSI5 Predicted protein n=3 Tax=Agaricales RepID=B0CSI5_LACBS Length = 255 Score = 106 bits (265), Expect = 6e-22, Method: Composition-based stats. Identities = 41/203 (20%), Positives = 74/203 (36%), Gaps = 20/203 (9%) Query: 6 RSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGM 65 R++ +RP+ L A GS +E +TK+ C + + +G + + Sbjct: 38 RASVDIRPIFLQPGLINQATGSAYIETQNTKIACAVFGPRQA-KNVAFNEKGRLNVDVKF 96 Query: 66 LPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADG-- 123 P S R A + I I +A+ ++V L L + I + ++++DG Sbjct: 97 APFSCDRRRAPM-----RDAEDRSIAMAIHQAISSSVRLDVLPKSVIDIFITIVESDGIE 151 Query: 124 GTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAA 183 G A + A AL DA + G+VA+ S V + D E + Sbjct: 152 GCVAAGVIVASTALTDA-----------GIEIFGLVASCSAAAVGEDIWLDPSLRESQES 200 Query: 184 ETDMNV-VMTEDGRIIEVQGTAE 205 + + M + + T Sbjct: 201 RGTLVLSCMPALSTVSSIWQTGN 223 >UniRef50_A8PFJ3 3' exoribonuclease family, domain 1 containing protein n=1 Tax=Brugia malayi RepID=A8PFJ3_BRUMA Length = 277 Score = 106 bits (264), Expect = 8e-22, Method: Composition-based stats. Identities = 50/234 (21%), Positives = 96/234 (41%), Gaps = 34/234 (14%) Query: 4 AGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLK---GQGQGWIT 60 G N R + + +G+V VEFG TK++C+ + + + +GQ ++ Sbjct: 44 DG--QNTFRSIVMQTGVLHDQKGTVYVEFGSTKIICSVDGPKEITKSADVDPTEGQIYVF 101 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 + ++ + + +A K+ R I+ I ALR+ V L+ + I ++ VL Sbjct: 102 LKNISAESNSLSGSNSFSASNKESNR---IRNAIESALRSIVCLELFCKAQIDVEITVLN 158 Query: 121 ADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLE---- 176 DGG AS+ + +AL+D+ ++ + VAA V + +G + D Sbjct: 159 DDGGVLAASLIASSLALIDSGIQVYDVC----------VAAHIVMLTDGRIIVDPSISSF 208 Query: 177 ------YVEDSAAETDMNV---VMTEDGRIIEVQGTAEGEPFTHEELLILLALA 221 ED ++V +M ++ + EP +L +A+A Sbjct: 209 PLSSIPDSEDFPRNAHLSVTVGIMPSLNQLTCCEFVGIAEP---HQLRHAIAVA 259 >UniRef50_Q8T4A9 Rrp45 n=2 Tax=melanogaster group RepID=Q8T4A9_DROME Length = 412 Score = 105 bits (263), Expect = 1e-21, Method: Composition-based stats. Identities = 48/225 (21%), Positives = 89/225 (39%), Gaps = 31/225 (13%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR +N+ R V LT GSV V GDTKVL + E G P L +G I Sbjct: 29 RLDGRRSNESRDVELTFG---KDWGSVAVSMGDTKVLAQVTCEMG-PPALSRPNEGKIHL 84 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAA--VDLKALGE------FTIT 113 + + A R++++ L+ R R++ +DL++L + I Sbjct: 85 NVYL-----GGVAFLDEAHTTHDQRSLKLNSLLERTFRSSRSIDLESLCVAVEKHVWCIR 139 Query: 114 LDCDVLQADGGTRTASITGACVALV----------DALQKLVENGKLKTNPM--KGMVAA 161 ++ +VL DG AS AL+ D ++ + + + P+ + Sbjct: 140 VNVNVLNHDGNLYDASTIATLAALMHFRRPDVWYKDGELRIFKKKEREFIPLLFHHYPVS 199 Query: 162 VSVGIVNG--EAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTA 204 V+ + + + D +E++AA++ + + + + Sbjct: 200 VTYCVYKSSVQPILDPTLLEENAADSVIVLSFNSFQELCSLTAGG 244 >UniRef50_Q4DZV2 Ribosomal RNA processing protein 41A, putative n=8 Tax=Trypanosomatidae RepID=Q4DZV2_TRYCR Length = 252 Score = 104 bits (259), Expect = 3e-21, Method: Composition-based stats. Identities = 44/180 (24%), Positives = 72/180 (40%), Gaps = 16/180 (8%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQ-GQGWI 59 +R GR + R +TL +G V G V + V L+ + + I Sbjct: 13 LRLDGRRPQESRRMTLEFGKVLGCDGCCTVMSGLATVCASVYGPREVTNRLESKYNECII 72 Query: 60 TAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVL 119 T E + + R A + ++ + E+ + R+ V L I + +VL Sbjct: 73 TCEVAIAAFAGEKRRAPQ----RRSKLSEEMSAAVLEVARSVVLLSQYPNSQIHICVEVL 128 Query: 120 QADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVE 179 + DG + A I AC+ALVDA M+ +V A +VG+++ V DL E Sbjct: 129 RQDGSDKAACINAACLALVDACVA-----------MRDIVYAQTVGLIHAVDVVDLTTEE 177 >UniRef50_Q10205 Exosome complex component rrp43 n=1 Tax=Schizosaccharomyces pombe RepID=RRP43_SCHPO Length = 270 Score = 103 bits (257), Expect = 5e-21, Method: Composition-based stats. Identities = 37/239 (15%), Positives = 84/239 (35%), Gaps = 18/239 (7%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +R GRS ++ R + + N A GS ++ G+ +C E P F +GWI Sbjct: 34 VRSDGRSVSEFREIVINDNCISTANGSAIIRAGENVFVCGIKAEIAEP-FENSPNEGWIV 92 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARA----LRAAVDLKALGEFTITLDC 116 + P + + Q + E+ + + ++ L++ + + + D Sbjct: 93 PNLELSPLCSSKFKPGPPSDLAQV-VSQELHQTLQQSNLINLQSLCIFEKKAAWVLYADI 151 Query: 117 DVLQADGGTRTASITGACVALV-----------DALQKLVENGKLKTNPMKGMVAAVSVG 165 L DG + AL D + + + + + V + S Sbjct: 152 ICLNYDGSAFDYAWAALFAALKTVKLPTAVWDEDLERVICASTLTRPVQLSTEVRSFSWS 211 Query: 166 IVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGE 224 + + + + D E+ + + +++ I+++ G L + +AR + Sbjct: 212 VFDDKLLADPTDEEEDLSTEFLTIMLNSSKNIVKIIKLG-GTHIQPLLLKKCIEVARSK 269 >UniRef50_UPI0001926EAD PREDICTED: similar to 3 exoribonuclease n=2 Tax=Hydra magnipapillata RepID=UPI0001926EAD Length = 437 Score = 102 bits (255), Expect = 7e-21, Method: Composition-based stats. Identities = 45/250 (18%), Positives = 94/250 (37%), Gaps = 32/250 (12%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +R GR R +++ G V+ G+T+VL S E P + +G + Sbjct: 24 IRLDGRQAFDYRNISIQFGID---YGCCEVQLGETRVLAQTSCELVKPIGTR-PTEGQLH 79 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRA--AVDLKALG------EFTI 112 + P ++ + G+ + +EI RLI R ++ +D+++L ++I Sbjct: 80 LNVDLSPMASPSFE-----TGRMTSQGLEINRLIERCIKESRCIDVESLCLIAGEKVWSI 134 Query: 113 TLDCDVLQADGGTRTASITGACVALVD----------ALQKLVENGKLKTNPMK--GMVA 160 +D VL G S +L + + P+ M Sbjct: 135 RVDIVVLNDCGNILDCSCIAGIASLAHFKHHDVTVTGTEVIIHNFKEKDPIPLNVHHMPI 194 Query: 161 AVSVGIVNG--EAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILL 218 + + G ++ + + D E E+S + + G + Q + G F +E++L Sbjct: 195 STTFGFIDDGEQMIIDPEEKEESILSGKLIMAFNIYGEVCCAQMSG-GVSFDYEQILQCA 253 Query: 219 ALARGESNPL 228 ++ +S+ + Sbjct: 254 KISSVKSSEI 263 >UniRef50_Q74ML0 NEQ111 n=1 Tax=Nanoarchaeum equitans RepID=Q74ML0_NANEQ Length = 218 Score = 102 bits (255), Expect = 8e-21, Method: Composition-based stats. Identities = 44/228 (19%), Positives = 86/228 (37%), Gaps = 35/228 (15%) Query: 3 PAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAE 62 R + RP+ + + + V + G+T+V+ SI E P +G+ + Sbjct: 14 IDNRPLLEYRPIKIKEDQNR-----VWLSLGNTQVIAGLSISEEEPME---KGKANLIVN 65 Query: 63 YGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRA--AVDLKAL-----GEFTITLD 115 P + +E +G + + + RLI RALR+ A+ L+ + +D Sbjct: 66 ADFSPIA-----GKEYFQGPPTEQDLILARLIDRALRSSNAIALEKHVIDENKVKSFYID 120 Query: 116 CDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDL 175 VL+ DG AS+ ++ L + L+ P+ +S D Sbjct: 121 VIVLEDDGNILDASMLAV-------VKLLEKANLLERKPLY-----ISFYKYKNIIFVDP 168 Query: 176 EYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARG 223 E+ + +++ + + I+ +Q F E+ L+ LA Sbjct: 169 TKEEEQISNAKISIAIDGEN-IVSIQKD--YGSFDENEIEELIDLAFD 213 >UniRef50_UPI000180B7A0 PREDICTED: similar to Exosome component 9 n=1 Tax=Ciona intestinalis RepID=UPI000180B7A0 Length = 385 Score = 102 bits (254), Expect = 1e-20, Method: Composition-based stats. Identities = 46/250 (18%), Positives = 89/250 (35%), Gaps = 32/250 (12%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +R GR + R +T+ G +V G TKV+ + E PR + Q +G + Sbjct: 24 IRIDGRGMLEYRGITIH---FSLDHGCCVVNMGGTKVMAQVAAELCRPRESR-QSEGSLG 79 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARAL--RAAVDLKALG------EFTI 112 + M + K G E+Q+++ R++ AVDL+ L + I Sbjct: 80 VQVEMSMMAAPH-----LDPAKPGDSGAELQQMLERSIVMSQAVDLEELCVRVGEKSWNI 134 Query: 113 TLDCDVLQADGGTRTASITGACVALVDALQKLV----------ENGKLKTNPMK--GMVA 160 + VL DG + + +L + V + P+ + Sbjct: 135 QIFVHVLSHDGNLLDCATIASMTSLKHFKRPDVSVVGQEVTIHKFEDKHPIPLTLHHVPF 194 Query: 161 AVSVGIVNGE--AVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILL 218 VS G V D E+ + + V + + + +Q + + + E++L Sbjct: 195 CVSFAFFQGGGLMVVDPTLNEEKVMDGKLMVAVNKHKEVCCLQMNGQLQ-LSKEQILNCT 253 Query: 219 ALARGESNPL 228 +A ++ Sbjct: 254 NIASTKAQTF 263 >UniRef50_B7GDQ5 Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7GDQ5_PHATR Length = 140 Score = 102 bits (254), Expect = 1e-20, Method: Composition-based stats. Identities = 36/163 (22%), Positives = 58/163 (35%), Gaps = 25/163 (15%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR + +RP++ +A+GS L + G T+VL + + I+ Sbjct: 3 RADGRLASTLRPLSCELGTLHNADGSALWKSGSTQVLAAVHGPVAPRQPQHETQKAKISI 62 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQA 121 + R E I +AL A + + I + +L A Sbjct: 63 ------------IIKSGTTVNTLEREWE--AFITKALTACLVTEQYPRSVIQIVLQILSA 108 Query: 122 DGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSV 164 DG A++ GA AL+DA MK + AV+ Sbjct: 109 DGSVLGAALNGAVAALMDA-----------GIAMKVLPVAVTC 140 >UniRef50_B0XFX8 mRNA transport regulator 3 n=2 Tax=Culex quinquefasciatus RepID=B0XFX8_CULQU Length = 173 Score = 101 bits (253), Expect = 1e-20, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 45/121 (37%), Gaps = 5/121 (4%) Query: 6 RSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGM 65 R + + R + A+GS +E G+TKV+ + +P+ + G + + Sbjct: 47 RQDTESRKYFMKLGVVSTAKGSAYLELGNTKVIVSVFDPREIPKQNTFRELGELYCDLKF 106 Query: 66 LPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGT 125 P + R + + + +AL+ V F I + +VL+ DG Sbjct: 107 SPFACVHRKNPQ-----TDAEERSLAAAMTKALQPVVCRHLFPNFQIDIFANVLEDDGSC 161 Query: 126 R 126 Sbjct: 162 L 162 >UniRef50_C1BMH5 Exosome complex exonuclease MTR3 n=2 Tax=Caligus RepID=C1BMH5_9MAXI Length = 278 Score = 101 bits (252), Expect = 2e-20, Method: Composition-based stats. Identities = 37/182 (20%), Positives = 66/182 (36%), Gaps = 21/182 (11%) Query: 2 RPAGRSNNQV--RPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQ-GW 58 R G + RP+ ++GS +E G TKVL + V + L G Sbjct: 37 RLDGEREKDISVRPLFCEVGILTQSKGSAYLERGRTKVLASVFGPREVSKKLDFSSTAGS 96 Query: 59 ITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDV 118 + EY P ++ R +G+ R + + +A+ LR+ V L + I + V Sbjct: 97 LNVEYKEAPFAS-----RSDGRGEAKERDVGL--FLAQTLRSTVCLHLYPKSRIDVCITV 149 Query: 119 LQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYV 178 L+ DG + + + + +V SV + G+A+ Sbjct: 150 LEDDGSAIPTA-----------ITAAALALSDASINLFDLVIGASVKLCGGKALSYPCKA 198 Query: 179 ED 180 E+ Sbjct: 199 EE 200 >UniRef50_Q9M209 Nucleolar autoantigen-like protein n=15 Tax=Embryophyta RepID=Q9M209_ARATH Length = 438 Score = 100 bits (249), Expect = 4e-20, Method: Composition-based stats. Identities = 53/250 (21%), Positives = 92/250 (36%), Gaps = 35/250 (14%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +R GR R +T+ GS V+ G T V+ + + V + +G ++ Sbjct: 27 LRVDGRGLYDYRKLTIKFG---KEYGSSEVQLGQTHVMGFVTAQL-VQPYKDRPNEGSLS 82 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRA--AVDLKALGE------FTI 112 P + + G+ G +E+ R+I R LR AVD ++L +++ Sbjct: 83 IFTEFSPMADPSFEP-----GRPGESAVELGRIIDRGLRESRAVDTESLCVLAGKMVWSV 137 Query: 113 TLDCDVLQADGGTRTASITGACVALVDALQKLVENG-------------KLKTNP--MKG 157 +D +L G A+ A AL+ + G + + P + Sbjct: 138 RIDLHILDNGGNLVDAANIAALAALMTFRRPDCTVGGENGQEVIIHPLEEREPLPLIIHH 197 Query: 158 MVAAVSVGIVN--GEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELL 215 + A + G N V D YVE++ M V + +G I +Q E +L Sbjct: 198 LPIAFTFGFFNKGNIVVMDPTYVEEAVMCGRMTVTVNANGDICAIQKPGEEG-VNQSVIL 256 Query: 216 ILLALARGES 225 L LA + Sbjct: 257 HCLRLASSRA 266 >UniRef50_D0N9X4 Exosome complex exonuclease RRP43, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0N9X4_PHYIN Length = 283 Score = 100 bits (249), Expect = 5e-20, Method: Composition-based stats. Identities = 46/245 (18%), Positives = 92/245 (37%), Gaps = 21/245 (8%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +RP R+ R V L + + A S LV+ G T VL + G P + QG + Sbjct: 35 VRPDTRTIEATRAVQLQTDVIQTAASSSLVKLGKTSVLTAIKLAVGTP-AVATPDQGELA 93 Query: 61 AEYGMLPRSTHTRNAREAAK-----GKQGGRTMEIQRLIARALRAAVDLKALGEFTITLD 115 + + P ++ ++ G Q R + R++ + + +K + + +D Sbjct: 94 IQVHLSPLCSNRFTVGRPSEEAQSIGSQLTRVIAGSRVVE--MESLSIVKGQSAWKLMVD 151 Query: 116 CDVLQADGGTRTASITGACVAL------------VDALQKLVENGKLKTNPMKGMVAAVS 163 + DG A++T AL VD + +V +G ++ A S Sbjct: 152 VYGVDHDGNVLDAALTSIIAALKTLKLPATSVNEVDNVVSIVPDGDATPLRVEHGAYATS 211 Query: 164 VGIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARG 223 +V+ + D E+ + ++ + DG++ V G + + +A+ Sbjct: 212 FAMVDDVVLIDPTSAEEGLSSAVFSLSYSTDGQLCGVHKAG-GSIVAPSVMQQCMTIAKR 270 Query: 224 ESNPL 228 + L Sbjct: 271 NTKEL 275 >UniRef50_UPI0000DB70B0 PREDICTED: similar to exosome component 9 n=2 Tax=Apocrita RepID=UPI0000DB70B0 Length = 396 Score = 99.2 bits (246), Expect = 9e-20, Method: Composition-based stats. Identities = 45/244 (18%), Positives = 88/244 (36%), Gaps = 38/244 (15%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +R GRS + RPV + Y GS +V G T+V+ + + P+ + +G + Sbjct: 22 IRLDGRSLLEARPVKI---YFASNWGSCMVLLGQTRVIAQVTCDIQQPKTSR-PNEGMLH 77 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAA------VDLKALG------ 108 + P + + GR EI LI+R L +DL++L Sbjct: 78 INVELNPMAAQHFD---------SGRQSEISILISRQLEKCYQDSKCIDLESLCIIADKK 128 Query: 109 EFTITLDCDVLQADGGTRTASITGACVALVDALQKLVEN----------GKLKTNPMK-- 156 + + +D +V+ DG + AL + V + + P+ Sbjct: 129 VWNLRVDINVINHDGNLIDCASIATLAALSHFHRPDVTSNGEDIIVHPFSEKDPLPLTLY 188 Query: 157 GMVAAVSVG-IVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELL 215 VS +G V D Y+E+ + + + + + + T E+++ Sbjct: 189 HYPVCVSFITFESGNTVMDPTYLEERIGVAQLTLGINSYRELCSLHFNYLTKTMTVEDVI 248 Query: 216 ILLA 219 ++ Sbjct: 249 SAVS 252 >UniRef50_Q7QBX4 AGAP002348-PA (Fragment) n=2 Tax=Endopterygota RepID=Q7QBX4_ANOGA Length = 260 Score = 98.9 bits (245), Expect = 1e-19, Method: Composition-based stats. Identities = 49/236 (20%), Positives = 87/236 (36%), Gaps = 33/236 (13%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR+ ++ R + ++ G V V G+T+ L + E P+ + +G + Sbjct: 10 RLDGRTLDEFRKLRISFGSEW---GLVHVILGETRALARITCEVVEPKATR-PNEGMLFL 65 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALR--AAVDLKALG------EFTIT 113 + P + + G+Q +++ R++ RAL+ VDL++L + + Sbjct: 66 NVELGPMAAPHFDG-----GRQSDECVQLNRILERALKDSNCVDLESLCLVSEEKVWKLR 120 Query: 114 LDCDVLQADGGTRTASITGACVALV------------DALQKLVENGKLKTNPMKGMVAA 161 +D VL +G A AL D + +E + Sbjct: 121 VDVTVLNHEGNAIDCCSIAALTALAHFKRPDITVDGEDVIVHTIEEKDPLKVTLFHYPLC 180 Query: 162 VSVGIVN--GEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELL 215 VS I N A+ D Y+E+ AE M + G + + T ELL Sbjct: 181 VSYAIFNQGKIAIADPTYLEERVAEARMVFGLNSYGELCGLHLGG--TTLTSAELL 234 >UniRef50_B6AFR7 3' exoribonuclease family protein, putative n=1 Tax=Cryptosporidium muris RN66 RepID=B6AFR7_9CRYT Length = 414 Score = 98.9 bits (245), Expect = 1e-19, Method: Composition-based stats. Identities = 51/267 (19%), Positives = 103/267 (38%), Gaps = 47/267 (17%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLK-GQGQGWI 59 +R GR++N+ R + +T N K +G V V+ G T VLC E +P + +GQ Sbjct: 13 LRIDGRTSNEFRRIQITLN--KTFDG-VEVKIGKTHVLCIIKAELMIPNIDRPSEGQVTF 69 Query: 60 TAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRA--AVDLKA------LGEFT 111 + +YG L + + + ++ ++E+ I R L+ A D + L ++ Sbjct: 70 SVDYGPLSLN----PNGQVYRHERNALSIELANYIERTLKETGAFDTEVLCIISGLCAWS 125 Query: 112 ITLDCDVLQADGGTRTASITGACVALVDA--------------------------LQKLV 145 I D L DG I A +++ + Sbjct: 126 IRCDIRALCDDGNLFDTCILATLSAFRHFRYKDIDCSSFLNKLKLNKYKNKDYLRIEQAI 185 Query: 146 ENGKLKTNPMKGMVAAVSVGI--VNGEA--VCDLEYVEDSAAETDMNVVMTEDGRIIEVQ 201 +N + + ++S+G VN E + D E+S + +++ + ++ + Sbjct: 186 KNMDMIPLNIYHFPLSISIGYTRVNNELQYIVDPCSEEESILQAVLHIAINGGQQVCGLS 245 Query: 202 GTAEGEPFTHEELLILLALARGESNPL 228 GE T +++ + LA+ + + Sbjct: 246 KPG-GEKLTIDQINFAIQLAKNHGSNI 271 >UniRef50_Q15024 Exosome complex exonuclease RRP42 n=27 Tax=Eumetazoa RepID=EXOS7_HUMAN Length = 291 Score = 98.5 bits (244), Expect = 2e-19, Method: Composition-based stats. Identities = 45/252 (17%), Positives = 90/252 (35%), Gaps = 31/252 (12%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +R GR R V + + + GS V+ G T +L E G P+ L+ +G++ Sbjct: 22 LRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPK-LEKPNEGYLE 80 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARAL--RAAVDLKAL---GE---FTI 112 +T R EI + R +++VDLK L + + Sbjct: 81 FFVDCSASATPEFEGRGG-----DDLGTEIANTLYRIFNNKSSVDLKTLCISPREHCWVL 135 Query: 113 TLDCDVLQADGGTRTASITGACVALVDALQKLV---------ENGKLKTNP-------MK 156 +D +L+ G A AL + V ++ +L +P ++ Sbjct: 136 YVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGSKDIELSDDPYDCIRLSVE 195 Query: 157 GMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLI 216 + V++ + V D E++ + + V +T G + ++ +G E + Sbjct: 196 NVPCIVTLCKIGYRHVVDATLQEEACSLASLLVSVTSKGVVTCMRKVGKG-SLDPESIFE 254 Query: 217 LLALARGESNPL 228 ++ + L Sbjct: 255 MMETGKRVGKVL 266 >UniRef50_UPI0001925D3D PREDICTED: similar to predicted protein n=1 Tax=Hydra magnipapillata RepID=UPI0001925D3D Length = 221 Score = 98.5 bits (244), Expect = 2e-19, Method: Composition-based stats. Identities = 37/217 (17%), Positives = 76/217 (35%), Gaps = 29/217 (13%) Query: 11 VRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRST 70 +R + Y + +GSV + G TKV+ V + + I Sbjct: 1 MREMECNLAYLEKPDGSVTLSHGQTKVISAVYGPVEVKMNKEITDKATIIC--------- 51 Query: 71 HTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTASI 130 + G + +++++A+ A+ I + ++ G + I Sbjct: 52 ----ILKPKIGMSAVKEKVMEKIVAKTCEQAIIASLHPRSAIQVVLQIVHDSGSLLSCLI 107 Query: 131 TGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV-NGEAVCDLEYVEDSAAETDMNV 189 AC++LV A PM+ M+ +V + N E + D E + + Sbjct: 108 NAACLSLVHA-----------GLPMRNMIVSVCCAVTNNDEYLVDPTIAEIQDCKCVLTF 156 Query: 190 VM-TEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 +++ I+ + + FT E+ L LA+ + Sbjct: 157 AFESKNLDIVSIFTSGL---FTVEQYFQCLQLAKASA 190 >UniRef50_B4LC44 GJ11305 n=2 Tax=Drosophila RepID=B4LC44_DROVI Length = 423 Score = 98.5 bits (244), Expect = 2e-19, Method: Composition-based stats. Identities = 49/250 (19%), Positives = 93/250 (37%), Gaps = 34/250 (13%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAE-GSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 R GR +N+ R V LT A+ G+V V G+TKVL S + G P + +G + Sbjct: 29 RFDGRKSNEFRDVKLTFG----ADWGTVAVSIGETKVLAQVSCDIGTPSSARA-NEGTLF 83 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRA--AVDLKALG------EFTI 112 + + A+ R + + L+ R ++ +DL++L + + Sbjct: 84 LNVDIKGVAFLDE-----AQATHDQRFLTLNSLLERTFKSSRCLDLESLCIAVEQSVWCV 138 Query: 113 TLDCDVLQADGGTRTASITGACVALVDALQKLVE------------NGKLKTNPMKGMVA 160 +D +VL DG AS A AL+ + V +L Sbjct: 139 RVDINVLNHDGNLYDASTIAALAALMHFRRPEVSYVEEEIRTFSERERELLPLLFLHYPV 198 Query: 161 AVSVGIV--NGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILL 218 +V+ + + + + D +E++AA++ + + + + P ++ Sbjct: 199 SVTYCVYKSSSQPLVDPTLLEENAADSVIVLSFNSYQELCTLNAGGT-APTNVRTIMQCA 257 Query: 219 ALARGESNPL 228 A S L Sbjct: 258 RSAASRSKAL 267 >UniRef50_Q5CWV7 Archeo-eukaryotice exosomal RNAse PH n=3 Tax=Cryptosporidium RepID=Q5CWV7_CRYPV Length = 303 Score = 98.5 bits (244), Expect = 2e-19, Method: Composition-based stats. Identities = 37/194 (19%), Positives = 76/194 (39%), Gaps = 23/194 (11%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +R R ++RP+T+ ++A+GS G+TKVLC + + + ++ Sbjct: 46 IRNDDRQFEELRPITIRTGVIENADGSAYFSIGNTKVLCGIYGPN-LCKQNPIEDGLSVS 104 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEI-------QRLIARALRAAVDLKALGEFTIT 113 EY + AK K +EI L+ + + + + + +I Sbjct: 105 VEYTIGSFC----RDSALAKSKVNTENIEIKSDEKIKSILLEKVISSVICHEKYKRSSID 160 Query: 114 LDCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGE--- 170 ++ DG +A+I+ AC++L +A +++ V + S+ +G+ Sbjct: 161 CYFYIIDDDGSAFSAAISAACLSLCNAKIEIIGLFSATNI---IAVNSNSLFNHDGKKQT 217 Query: 171 -----AVCDLEYVE 179 + D Y E Sbjct: 218 EDEYSMILDPTYNE 231 >UniRef50_B0CZF3 Predicted protein n=1 Tax=Laccaria bicolor S238N-H82 RepID=B0CZF3_LACBS Length = 276 Score = 98.1 bits (243), Expect = 2e-19, Method: Composition-based stats. Identities = 44/247 (17%), Positives = 86/247 (34%), Gaps = 23/247 (9%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +RP GR N R + + A+GS LV G+T V+C E P +G +G++ Sbjct: 27 VRPDGRPLNVARDLAVNVGSISTADGSALVRLGNTTVVCGVKAEIAEPELDEGV-RGFLV 85 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGE---FTITLDCD 117 + + ++ Q L+A + L + + +D Sbjct: 86 PNLDLPAMCSPRFKPGPPSEEAQVLSDRLNDALVASNILPLTSLSIHPNKAAWVLYVDAI 145 Query: 118 VLQADGGTRTASITGACVALVDALQKLVENGKLKT---------NPM----KGMVAAVSV 164 + DG A++ AL + + P+ + +S Sbjct: 146 CINYDGNVFDAALIAMVEALRNTQLPKATYDEETGRTTCSRKIKVPLELNHTSLPVPLSF 205 Query: 165 GIVNG-EAVCDLEYVEDSAAETDMNVVMTEDG--RIIEVQGTAEGEPFTHEELLILLALA 221 G+ + + D E+ +T ++++M+ R+I V G ++ LL + A Sbjct: 206 GVFDSTHVLADPTSFEEPLLDTTISIIMSNANPDRLISVSQLGAGG---NDALLTCVEAA 262 Query: 222 RGESNPL 228 R + Sbjct: 263 RVRCREI 269 >UniRef50_Q8ILI7 Exosome complex exonuclease rrp41, putative n=6 Tax=Plasmodium RepID=Q8ILI7_PLAF7 Length = 246 Score = 97.7 bits (242), Expect = 2e-19, Method: Composition-based stats. Identities = 36/228 (15%), Positives = 82/228 (35%), Gaps = 25/228 (10%) Query: 2 RPAGRSNNQVRPVTLTRNY---TKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGW 58 R GR N++ R + ++ +G E G+TK+ +G + + + Sbjct: 13 RIDGRKNDECRLIKISLGNGNELIDVDGFSFFEIGNTKLFAYI---QGPNEYRRPDEKCL 69 Query: 59 ITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDV 118 + + P + + +++ + T EI I + L I + + Sbjct: 70 VKCNVFLSPFNILEKKRKKS----KDNVTREISSYIRNICNHIILLDLYKNSEINIFLYI 125 Query: 119 LQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYV 178 ++ DGG + A++ +AL+DA +K ++A SV + + D Sbjct: 126 IERDGGLKAAAVNTCILALIDA-----------GIAIKYFISASSVLYLQNNIIVDGNQF 174 Query: 179 EDSAAETDMNVVMT-EDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 E ++ ++ + + I+ ++ AE + +L Sbjct: 175 EVNSGSPELTLAIDMSSNNIVLLEFDAE---VPIDIFQSMLKTCAQAC 219 >UniRef50_A9UUZ6 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9UUZ6_MONBE Length = 214 Score = 97.7 bits (242), Expect = 3e-19, Method: Composition-based stats. Identities = 34/141 (24%), Positives = 55/141 (39%), Gaps = 5/141 (3%) Query: 6 RSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGM 65 R + R + L A GS +E G TKV+ E R G + Sbjct: 15 REAGEPRSLALQTGVVSRAAGSCFLEMGRTKVMVACYGPEEAARAGTFSDMGVLECHITR 74 Query: 66 LPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGT 125 P + R + +G R R + ++ A+ L+ + TI L +L+ DGG Sbjct: 75 APFAEQKRATLQETDADRGLR-----RDLDAMIKPAILLEKYPKSTIALQATILEDDGGV 129 Query: 126 RTASITGACVALVDALQKLVE 146 A + + ALV+A +L + Sbjct: 130 LPALVMASSTALVEAGIELRD 150 >UniRef50_C4LZA9 Exosome complex exonuclease, putative n=2 Tax=Entamoeba RepID=C4LZA9_ENTHI Length = 265 Score = 97.7 bits (242), Expect = 3e-19, Method: Composition-based stats. Identities = 47/251 (18%), Positives = 89/251 (35%), Gaps = 37/251 (14%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVL--CTASIEEGVPRFLKGQGQGW 58 +R R ++ R V+ + GSV G++K L C E V QG Sbjct: 12 IRIDARRLDEFREVS----FVCREPGSVETHIGNSKALGECVV---EPVCPGRSRPDQGI 64 Query: 59 ITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRA--AVDLKALG------EF 110 L + +EI +++ R L + A+D+ L + Sbjct: 65 FNIRVNFLEMANPNFYDSRGP-----RDLIEIGKVVERGLLSTRAIDVDGLVIIRGKLVW 119 Query: 111 TITLDCDVLQADGGTRTASITGACVALVDALQKLV------------ENGKLKTNPMKGM 158 IT+ ++ G A AL+ A+++ V E K + + Sbjct: 120 KITVCVHIINDCGNLMDLVSITAISALLTAVRREVQICGTDVKILTPEERKPVPLAIHHI 179 Query: 159 VAAVSVGI-VNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLIL 217 VS GI +G + D E+S ++ + + + ++G + VQ + P + + + Sbjct: 180 PITVSFGITESGVPLLDPSEREESVCKSHLTIAINKEGEVCAVQKSG--TPISMKVIQKC 237 Query: 218 LALARGESNPL 228 A ++ L Sbjct: 238 CDTALSKAKML 248 >UniRef50_Q55BJ2 Putative uncharacterized protein n=1 Tax=Dictyostelium discoideum RepID=Q55BJ2_DICDI Length = 526 Score = 97.3 bits (241), Expect = 3e-19, Method: Composition-based stats. Identities = 43/248 (17%), Positives = 91/248 (36%), Gaps = 31/248 (12%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR N +R + + + G V V+ G T+V + + P+ + +G+ Sbjct: 22 RIDGRGVNDMRAIKIEFG---KSYGVVEVQLGKTRVFTAITCDIVEPK-PERPNEGFYIF 77 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALR--AAVDLKALG------EFTIT 113 + P S+ + N + E+ R+I + L+ A+D +AL ++I Sbjct: 78 NTDISPMSSVSVNV-----NQPNPMESELGRIIEKGLKDSRAIDTEALCIISGSKVWSIK 132 Query: 114 LDCDVLQADGGTRTASITGACVALV------------DALQKLVENGKLKTNPMKGMVAA 161 + VL G + AL+ DA ++ + + + Sbjct: 133 IAIHVLDDCGNLLDCASISVMTALIHFRKPDVTVIGNDATIHSLDEREPVPLSIHHTPIS 192 Query: 162 VSVGIVNGEA-VCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLAL 220 ++ G E + D + E+S + ++ + I V G T +++L + Sbjct: 193 ITFGFFPNEIMIVDPDTKEESVMDGKLSFFVNIHKEICGVSKGG-GTSTTIDQVLKCSKI 251 Query: 221 ARGESNPL 228 A ++ + Sbjct: 252 AVIKAAEI 259 >UniRef50_B6K5V8 Exosome complex exonuclease RRP43 n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6K5V8_SCHJY Length = 274 Score = 97.3 bits (241), Expect = 4e-19, Method: Composition-based stats. Identities = 38/221 (17%), Positives = 74/221 (33%), Gaps = 19/221 (8%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +RP GR+ ++ RP + A+GS +V G++ +C E P L+ +GWI Sbjct: 31 VRPDGRTVSEFRPRVVNTQCISTADGSCIVRAGESVFVCGIKAEIAEPE-LEAPSRGWIV 89 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARA----LRAAVDLKALGEFTITLDC 116 M P + Q + +++ + L + + + + D Sbjct: 90 PNVEMGPLCNGKFKPGPPRELAQVVSEQ-MNQVLEQTCLVPLESLCIREKKAAWCLYADI 148 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPM-------KGMVAAVSVG---- 165 L DG + AL V + + + K +A S Sbjct: 149 VCLNYDGNAFDCAWKALMHALETTRLPAVVWDEDEERVVCVHDERAKHPLALSSHIESFS 208 Query: 166 --IVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTA 204 + + D E+S + +++ GRI ++ Sbjct: 209 WTVFGNCVLADPTDDEESLCVERLTIMLDNAGRICKLVKMG 249 >UniRef50_A8IE44 3'-5' exoribonuclease PH component of the exosome n=1 Tax=Chlamydomonas reinhardtii RepID=A8IE44_CHLRE Length = 296 Score = 96.6 bits (239), Expect = 6e-19, Method: Composition-based stats. Identities = 56/254 (22%), Positives = 91/254 (35%), Gaps = 36/254 (14%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +R GR N +R + S V G T+V+ S P + +G + Sbjct: 26 VRLDGRRPNDMRKPKFQFSLDDR---SCTVAQGSTRVMAVVSAALEAP-YPDRPSEGPLR 81 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRA--AVDLKALGE-------FT 111 P ++ GK G +++ RLI R LR AVD +AL + Sbjct: 82 FNVEFSPMASPAFEP-----GKPGEDAIQVARLIERGLRQSGAVDQEALWVGAGRVRVWA 136 Query: 112 ITLDCDVLQADGGTRTASITGACVALVDALQKLVENGKLKT-------------NPMK-- 156 + +DC VL G A AL+ + VE G P+ Sbjct: 137 LRVDCHVLDHGGNLLDCCFLAALAALMAFRKPEVEVGGESGSEIIVHPPEVREPVPLTIH 196 Query: 157 GMVAAVSVGI--VNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEEL 214 + AV+ + V D + E++AA VVM + V A+G + E+ Sbjct: 197 HLPVAVTFALFQAGDMLVADPTWKEEAAAAGSCTVVMNPAQEVCCVHK-ADGIGLSPEQF 255 Query: 215 LILLALARGESNPL 228 + + LA ++ + Sbjct: 256 MRCVRLAGRQAEEV 269 >UniRef50_B3L6X6 Exosome complex exonuclease, putative n=5 Tax=Plasmodium RepID=B3L6X6_PLAKH Length = 514 Score = 96.6 bits (239), Expect = 6e-19, Method: Composition-based stats. Identities = 46/246 (18%), Positives = 92/246 (37%), Gaps = 33/246 (13%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +R GR+ R +++ Y G+V V G TKV+C + E P F K +G I Sbjct: 19 LRLDGRNFEDSRNISI---YFFGEYGNVEVSIGHTKVICKITSEIVKP-FDKRPNEGIIK 74 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARAL--------RAAVDLKALGEFTI 112 + + N+ + +EI+ LI R L + + + + Sbjct: 75 VNLDIDSFTNVNDNS------QISDECLEIKNLIERILKSSNLLNFESLCIIPHKKVWCL 128 Query: 113 TLDCDVLQADGGTRTASITGACVALVD----------ALQKLVENGKLKTNPMK--GMVA 160 ++ V++ DG + A LV +E G+ P+ Sbjct: 129 LVNIIVVENDGNLYDSCFLSAYSGLVHYRNNEVTVDSIGNIFIEQGETNYTPLSIHNTPI 188 Query: 161 AVSVGIVN--GEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILL 218 + N + D E+ + ++V + ++G+++ + G P ++E++L + Sbjct: 189 LTTFAYFNCEDICLIDPSIQEEEFMSSKLSVALNKNGKLVSILKPG-GSPISYEKILEAI 247 Query: 219 ALARGE 224 LA+ Sbjct: 248 ELAKKR 253 >UniRef50_UPI000192526B PREDICTED: similar to predicted protein n=1 Tax=Hydra magnipapillata RepID=UPI000192526B Length = 426 Score = 95.4 bits (236), Expect = 1e-18, Method: Composition-based stats. Identities = 40/248 (16%), Positives = 73/248 (29%), Gaps = 31/248 (12%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 R GRS N R +T+ + GS V+ T VL E P G + Sbjct: 22 FRTDGRSCNDYRAITVQTGIISNTSGSAQVKLAGTNVLIGVKAEISEP-LPSKPNLGKVE 80 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGE------FTITL 114 ++ R E+ + A+DL+ L + + + Sbjct: 81 F---FSANASPIFEGRGG-----DELAFELSAALQNTFSGAIDLEKLCIIPGKACWILYI 132 Query: 115 DCDVLQADGGTRTASITGACVALVDALQKLV---------------ENGKLKTNPMKGMV 159 D VL+ G A AL + + + + + Sbjct: 133 DALVLECGGNLFDALSIAVKAALHNTRIPTLSIIGEGAEKSIEVSDDPYNSTPIDVSNIP 192 Query: 160 AAVSVGIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLA 219 V++ V + D E+ ++ + V + + G + VQ G + L +L Sbjct: 193 VLVTLNKVGERYIVDATAEEEICSDAQLLVSINQKGNVCSVQKHGSGG-INPDLLFEMLK 251 Query: 220 LARGESNP 227 + Sbjct: 252 PPKRNKKT 259 >UniRef50_D0NV16 Putative uncharacterized protein n=1 Tax=Phytophthora infestans T30-4 RepID=D0NV16_PHYIN Length = 171 Score = 95.4 bits (236), Expect = 1e-18, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 63/183 (34%), Gaps = 34/183 (18%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFL-KGQGQGWIT 60 R GR+ N++RP + A+GS + G + VL + + + + Sbjct: 8 RQDGRAGNELRPFASEQGALFRADGSARMSHGSSTVLAAVYGPGQARNWRAENTDKATLD 67 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 + + KG + E +++I + V + I++ V++ Sbjct: 68 VCFKL-------------EKGIMTSKEKEYEQIIRQTFAPVVLTDSFPRAVISIVVQVIE 114 Query: 121 ADGGTR--------TASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAV 172 +G +I +AL+DA PM +V A S + G + Sbjct: 115 DNGSISFPLFLIIAALAINAVSLALMDA-----------GVPMLSVVTATSR-LFLGSPL 162 Query: 173 CDL 175 DL Sbjct: 163 RDL 165 >UniRef50_C4WV26 ACYPI003501 protein n=2 Tax=Acyrthosiphon pisum RepID=C4WV26_ACYPI Length = 267 Score = 95.0 bits (235), Expect = 2e-18, Method: Composition-based stats. Identities = 38/223 (17%), Positives = 72/223 (32%), Gaps = 25/223 (11%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR R +L N A+GS +V+ G+T V+C E GVP+ + G++ Sbjct: 22 RNDGRELMNFRDASLNLNTIHTADGSAVVKIGNTAVVCGIKAELGVPKA-EAPDIGYLLV 80 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARA--------LRAAVDLKALGEFTIT 113 + + ++ G M++ + L+ + ++ Sbjct: 81 NIELPSLCS-----KKIRPGIPCDEAMQMTSFLNEVCNNCKILDLQQLCISVDKLVWVLS 135 Query: 114 LDCDVLQADGGTRTASITGACVALVDALQKLVENGK----------LKTNPMKGMVAAVS 163 D L DG A + AL V+ K + + + + Sbjct: 136 CDIYCLNYDGSVLDACLIALLSALQTVKIPEVKYDKETEETTVIENYIPLKVNSLPVSST 195 Query: 164 VGIVNGE-AVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAE 205 G+ N + + D E+ + + VV + E Sbjct: 196 FGVFNEKYILADPTEEEEQLCVSKLTVVTNGSLIFSLHKPGGE 238 >UniRef50_Q5RKV6 Exosome complex exonuclease MTR3 n=9 Tax=Eutheria RepID=EXOS6_HUMAN Length = 272 Score = 94.6 bits (234), Expect = 2e-18, Method: Composition-based stats. Identities = 40/201 (19%), Positives = 64/201 (31%), Gaps = 31/201 (15%) Query: 6 RSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQG---------- 55 R ++RPV A+GS +E G TKVLC S +G G Sbjct: 31 RDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGGGPAGAGGEAPA 90 Query: 56 --QGWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTIT 113 +G + ++ P + R G E+ + AL AV L + Sbjct: 91 ALRGRLLCDFRRAPFA-----GRRRRAPPGGCEERELALALQEALEPAVRLGRYPRAQLE 145 Query: 114 LDCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEA-- 171 + +L+ G A AL M +V + + G A Sbjct: 146 VSALLLEDGGSALAA-----------ALTAAALALADAGVEMYDLVVGCGLSLAPGPAPT 194 Query: 172 -VCDLEYVEDSAAETDMNVVM 191 + D +E+ A + V + Sbjct: 195 WLLDPTRLEEERAAAGLTVAL 215 >UniRef50_Q9VW53 Mtr3 n=14 Tax=Drosophila RepID=Q9VW53_DROME Length = 326 Score = 94.6 bits (234), Expect = 2e-18, Method: Composition-based stats. Identities = 29/174 (16%), Positives = 56/174 (32%), Gaps = 21/174 (12%) Query: 6 RSNNQV--RPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPR-FLKGQGQGWITAE 62 R Q+ R + GS +E+G+TKVL + + + R + G + Sbjct: 40 REPTQLAPRNTFIRAGVLTTVRGSAYMEYGNTKVLAIVAPPKELIRASARRMNMGVLNCY 99 Query: 63 YGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQAD 122 ST ++ R + ++ +A+ V F + + +L D Sbjct: 100 VNFAAFSTGDLDS-------VPERERHLSSMLTKAMEPVVCRTEFLNFQLDIRVLILDDD 152 Query: 123 GGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLE 176 G + +I VALV+ ++ A + I + Sbjct: 153 GCLLSTAINCCGVALVE-----------CGISTYDLITASTACIYRDHVFLNPS 195 >UniRef50_B0XFZ4 Exosome complex exonuclease RRP46 n=2 Tax=Culicini RepID=B0XFZ4_CULQU Length = 217 Score = 93.9 bits (232), Expect = 4e-18, Method: Composition-based stats. Identities = 40/218 (18%), Positives = 74/218 (33%), Gaps = 29/218 (13%) Query: 9 NQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPR 68 + +RP+ N ++GS ++ G+T V + + V + ++ + Sbjct: 8 DSLRPMFCELNILTRSDGSAMLTQGETAVTASVNGPVEVKLQHMNVEKSYVEIHF----- 62 Query: 69 STHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTA 128 + G R +E LI +A+ +++ +Q GG Sbjct: 63 ------RPRSGMGSVNDRLLE--NLIRNTYESALLTALHPRTAVSIQIQEMQDRGGLVAC 114 Query: 129 SITGACVALVDALQKLVENGKLKTNPMKGMVAAV-SVGIVNGEAVCDLEYVEDSAAETDM 187 +I C+AL+D MK +VAAV SV G D + + A Sbjct: 115 AINAVCLALID-----------SGIEMKYLVAAVHSVLDEEGGITLDPDELRAKDARARF 163 Query: 188 NVVMTEDGR-IIEVQGTAEGEPFTHEELLILLALARGE 224 V R + + + FT E+ L ++ Sbjct: 164 TFVFENTSRNTVSIYTHGK---FTSEQYHRALRMSTDA 198 >UniRef50_B0EPF7 Exosome complex exonuclease RRP42, putative n=2 Tax=Entamoeba RepID=B0EPF7_ENTDI Length = 265 Score = 93.5 bits (231), Expect = 5e-18, Method: Composition-based stats. Identities = 50/246 (20%), Positives = 93/246 (37%), Gaps = 40/246 (16%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +R GR+N Q R + + A GSV + G T+V+ E G P L + Sbjct: 20 IRTDGRANIQFREIKCEKGVIDQANGSVRLCLGKTEVVVGVKCELGEPSILTPE------ 73 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAA--VDLKALGE------FTI 112 + N G R +EI+++I +L A L+ L + I Sbjct: 74 ---------SGRYNVLVKQVGTMTSRDVEIEKMILVSLENAGKDMLQELCVLKGKLCWII 124 Query: 113 TLDCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMK---------------- 156 +D V++ DG + AL++ L +V ++ ++ Sbjct: 125 YVDVVVVEDDGNVMDCTGLAVRAALLNTLIPIVNVISGDSDTVQVDIDKDNVQFKKFKPE 184 Query: 157 GMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLI 216 + VS+ E + D VE+ +++ +T +G++ +Q G F EE+ Sbjct: 185 SVPLCVSLVQFEKEFIADPSKVEEKCNGSEITTAITSNGKVCGIQKGGNG-CFKTEEMYD 243 Query: 217 LLALAR 222 ++ A+ Sbjct: 244 MIIQAQ 249 >UniRef50_Q5KHU0 Putative uncharacterized protein n=1 Tax=Filobasidiella neoformans RepID=Q5KHU0_CRYNE Length = 262 Score = 93.5 bits (231), Expect = 5e-18, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 80/229 (34%), Gaps = 19/229 (8%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTA-SIEEGVPRFLKGQGQGWI 59 +R R ++R + + ++GS G T V + E R L + + Sbjct: 14 LRQDARRPYELRSTSFQLSTHSSSDGSSTATQGLTTVEVSVFGPREPRNRGLASHDRAVV 73 Query: 60 TAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVL 119 + E G++P + R + R EI I + + I + VL Sbjct: 74 SVEVGVVPWAAGAGARRT----RGDKRLQEIGAAIRQTFEPVIMTHLYPRSEIAIHVQVL 129 Query: 120 QADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVE 179 ADGG SI +AL+DA + V+++S+G+ + + DL E Sbjct: 130 SADGGILPTSINATTLALIDA-----------GIALLDYVSSISIGLHLLQPLLDLSQPE 178 Query: 180 DSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 +S + + + G+I Q + +L L L Sbjct: 179 ESDLPSLVIASLPSSGKITLAQM---ETRLHVDRFEEMLTLGVEACKVL 224 >UniRef50_Q9NQT4 Exosome complex exonuclease RRP46 n=10 Tax=Chordata RepID=EXOS5_HUMAN Length = 235 Score = 93.5 bits (231), Expect = 6e-18, Method: Composition-based stats. Identities = 36/190 (18%), Positives = 57/190 (30%), Gaps = 26/190 (13%) Query: 6 RSNN-QVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYG 64 R +R +N +GS GDT VL V + + + Sbjct: 22 RGPGCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEV--- 78 Query: 65 MLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGG 124 G G +RLI A V +IT+ V+ G Sbjct: 79 ----------ILRPKIGLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGS 128 Query: 125 TRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV-NGEAVCDLEYVEDSAA 183 + AC+ALVDA PM+ + V+ + +G V D ++ A Sbjct: 129 LLACCLNAACMALVDA-----------GVPMRALFCGVACALDSDGTLVLDPTSKQEKEA 177 Query: 184 ETDMNVVMTE 193 + + Sbjct: 178 RAVLTFALDS 187 >UniRef50_C1E415 Predicted protein (Fragment) n=2 Tax=Micromonas RepID=C1E415_9CHLO Length = 291 Score = 93.1 bits (230), Expect = 6e-18, Method: Composition-based stats. Identities = 53/253 (20%), Positives = 94/253 (37%), Gaps = 35/253 (13%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +R GR RPV+ +G V+ GDT+VL S + P +G +G IT Sbjct: 25 LRVDGRGPFDTRPVSYRFGPK---DGMCEVQLGDTRVLAVVSAKLEPPSGARG-NEGTIT 80 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRA--AVDLKALGE------FTI 112 P ++ G+ G + E+ ++ RA+R AVD+++L + + Sbjct: 81 INVEFSPMASPNFEP-----GRPGEQAQELALVLERAIRETGAVDVESLCVLAGRRVWHV 135 Query: 113 TLDCDVLQADGGTRTASITG------------ACVALVDALQKLVENGKLKTNPMK--GM 158 D VL A G A+ A V+ L + + P+ + Sbjct: 136 RCDVHVLDACGNIAGAASLAADAALLSFRRPEATVSPDTQLITVHPADVREPVPLALHHL 195 Query: 159 VAAVSVGIV---NGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELL 215 A++ G +G + D E+ +++ VV+ + V+ E E+ Sbjct: 196 PVAITFGYFAEQDGLVIADPTVNEEMVIGSELVVVLNAHDELCAVRYGGE-VAVKPSEIS 254 Query: 216 ILLALARGESNPL 228 + +A S L Sbjct: 255 RCVRIASRISKDL 267 >UniRef50_C1BRT2 Exosome complex exonuclease RRP43 n=1 Tax=Caligus rogercresseyi RepID=C1BRT2_9MAXI Length = 279 Score = 93.1 bits (230), Expect = 7e-18, Method: Composition-based stats. Identities = 52/251 (20%), Positives = 98/251 (39%), Gaps = 31/251 (12%) Query: 1 MRPAGR--SNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGW 58 +R GR +RP++++ A+GS +V G T V+C +++ + +G+ Sbjct: 24 LRLDGREGGLESIRPISISSGSIASADGSAIVRKGHTTVICGITLQIASLDE-ETPTKGY 82 Query: 59 ITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARAL--RAAVDLKALG------EF 110 I + +KG M + + I + VD K L + Sbjct: 83 IVPHVDLPSMCHP---RIYKSKGPTAEEAMILTKFIMDVILNSEVVDPKDLCIVPGEIVW 139 Query: 111 TITLDCDVLQADGGTRTASITGACVALV---------------DALQKLVENGKLKTNPM 155 + +D L DG R A +T +AL D Q V + + + Sbjct: 140 VLKIDLTCLNQDGNLRDALVTALILALKSLRFPKVVSYKAEDEDKTQINVFEKEHSSLRL 199 Query: 156 KGMVAAVSVGIVNGE-AVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEEL 214 K + +VS+ ++ GE + D E++ A + VV+ + + + GEP E + Sbjct: 200 KNIPVSVSIAVMEGERLLVDPTDEEETFATDSITVVLNAEEELCYLSKNG-GEPIFDELM 258 Query: 215 LILLALARGES 225 ++ LAR ++ Sbjct: 259 NKVIDLARAQA 269 >UniRef50_Q9SSE1 MLP3.20 protein n=17 Tax=Embryophyta RepID=Q9SSE1_ARATH Length = 297 Score = 92.7 bits (229), Expect = 9e-18, Method: Composition-based stats. Identities = 45/263 (17%), Positives = 89/263 (33%), Gaps = 37/263 (14%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +R GR RP+ + A GS V G T V+ + E G P L+ +G + Sbjct: 19 LRTDGRKRLTYRPIYVETGVIPQANGSARVRIGGTDVIASVKAEIGRPSSLQ-PDKGKVA 77 Query: 61 AEYGMLPRSTHTRNAREAAK--------------GKQGGRTME--IQRLIARA---LRAA 101 P + T R + G + G ++ I L+ A L + Sbjct: 78 VFIDCSPTAEPTFGGRGGEELSSELALALQRCLLGGKSGAGLQSSIHVLVPGAGINLSSL 137 Query: 102 VDLKALGEFTITLDCDVLQADGGTRTASITGACVALVDALQKLVE--------------- 146 + + + + +D V+ +DG A AL + V Sbjct: 138 LIKEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALTNTAIPKVNVSAEVADDEQPEIDI 197 Query: 147 -NGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAE 205 + + + V++ V + D E+S + +++ + G I + + Sbjct: 198 SDEEYLQFDTSSVPVIVTLTKVGTHYIVDATAEEESQMSSAVSISVNRTGHICGLTKRS- 256 Query: 206 GEPFTHEELLILLALARGESNPL 228 G +L ++++A+ + L Sbjct: 257 GSGLDPSVILDMISVAKHVTETL 279 >UniRef50_B6ACQ4 3' exoribonuclease family protein, putative n=1 Tax=Cryptosporidium muris RN66 RepID=B6ACQ4_9CRYT Length = 239 Score = 92.3 bits (228), Expect = 1e-17, Method: Composition-based stats. Identities = 35/208 (16%), Positives = 60/208 (28%), Gaps = 36/208 (17%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +R GR ++RP+ + GS G ++ A E I Sbjct: 3 IRLDGRQYLELRPINIRIGVFHGLSGSSDFSMGLSRATAVAWQPEETNNIRGKSYLDVII 62 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 G G ++ R L +D K + +++ V+ Sbjct: 63 ----------------RPNSGSTGDTEKLLELYCTRVLEDIIDFKQIPRCIVSVAIQVIS 106 Query: 121 ADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVG--------IVNGEAV 172 DG A +AL+DA PM A+S+ ++ + Sbjct: 107 QDGPIFPICFNAAVLALLDA-----------GIPMTTTPLAISIAEACTYQLNDLSKHII 155 Query: 173 CDLEYVE-DSAAETDMNVVMTEDGRIIE 199 D E D +V + +II Sbjct: 156 IDPNGEEIDKCISCSHYIVSSRSNQIIA 183 >UniRef50_Q01E66 Putative exonuclease RRP41 (ISS) n=1 Tax=Ostreococcus tauri RepID=Q01E66_OSTTA Length = 321 Score = 92.3 bits (228), Expect = 1e-17, Method: Composition-based stats. Identities = 50/254 (19%), Positives = 89/254 (35%), Gaps = 44/254 (17%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQG--- 57 +R GR N++R +GS E G+T + C R G +G Sbjct: 60 LRLDGRRANEIRRPRHAFAIDAQCDGSARFELGNTVIECRVDGPSE--RKFGGAEEGASE 117 Query: 58 --WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLD 115 +T +G ++ A K GR+ + + ++A+AL +AV + + + + Sbjct: 118 ACALTCSHGRSAFASDGVQAG----RKGDGRSKQFESVLAKALTSAVCVDLMPRCEVQVR 173 Query: 116 CDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDL 175 VL DGG R AS V P+KG++ + +VG ++GEA+ D+ Sbjct: 174 TTVLCDDGGARAAS-----------ACAAVLALADAGIPLKGIIGSCTVGHLDGEALIDV 222 Query: 176 EYVEDSAAETDM----------------------NVVMTEDGRIIEVQGTAEGEPFTHEE 213 E+ ++ +++ I + E T E Sbjct: 223 NRDEERGRGPELWTCALSAGDVPDDDENEDDGEDHLMGATGNHITVIVEELERGKTTMET 282 Query: 214 LLILLALARGESNP 227 + LA Sbjct: 283 FKSMHDLALAGCET 296 >UniRef50_UPI0000E45C6E PREDICTED: similar to SCL75 protein n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000E45C6E Length = 437 Score = 92.3 bits (228), Expect = 1e-17, Method: Composition-based stats. Identities = 50/258 (19%), Positives = 86/258 (33%), Gaps = 44/258 (17%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR R + + G +V GDT++L S E P+ +G + Sbjct: 21 RLDGRQPYDYRRTKIEFGVER---GCCMVHMGDTRILAQVSCEVVEPKE-NRPNEGQLFV 76 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALR--AAVDLKALG------EFTIT 113 + P ++ T A G+ +E+ RL+ R ++ AVD+++L + I Sbjct: 77 NLELSPMASTTFEA-----GRLSDYGIELNRLLERTVKDSRAVDVESLCIVAGEKVWKIR 131 Query: 114 LDCDVLQADGGTRTASITGAC----------VALVDALQKLVENGKLKTNPMK--GMVAA 161 LD VL DG ++ A V ++ + P+ + Sbjct: 132 LDVHVLNHDGNILDSACLAALAALSHFRRPDVTVIGESVTIHSPQDRDPVPLNVHHIPVC 191 Query: 162 VSVGIV--NGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTA-------------EG 206 V+ + D E+ E M V M + +Q T + Sbjct: 192 VTFAFYHKGKRLLVDPTEKEEKVMEGTMVVGMNVHRELCTMQVTGSMLILKEQIIRCCQI 251 Query: 207 EPFTHEELLILLALARGE 224 EL L+ LA + Sbjct: 252 GVVKVSELTELIKLALEK 269 >UniRef50_C4LW17 3' exoribonuclease family protein n=3 Tax=Entamoeba RepID=C4LW17_ENTHI Length = 227 Score = 91.9 bits (227), Expect = 2e-17, Method: Composition-based stats. Identities = 35/227 (15%), Positives = 88/227 (38%), Gaps = 30/227 (13%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR N++R T+ A+GS L++ ++KV+ + I+ + + T Sbjct: 7 RGDGREANEIRATTIKIGVISGAKGSCLIQKENSKVISSVQIKTQ-DESIDFE----FTV 61 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQA 121 + + + + +E+Q ++ ++L + ++ ++ I L V++ Sbjct: 62 KVTFAQFGNNDLLNK--------RKEVELQEILTQSLVSRINQESNKGKIICLQVFVMEQ 113 Query: 122 DGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGI--VNGEAVCDLE-YV 178 DG + I + +AL D M ++ A +V + + + D Sbjct: 114 DGSVEDSIINSSSLALFD-----------SEIQMDSIIIATTVVKLPIYNQVIVDPTALE 162 Query: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 E+ + + + + I ++ + +P +++ L++A Sbjct: 163 EEKKEGSVLIACIPSNSSITQIYMSGVLDP---QDISSCLSIALDSC 206 >UniRef50_D0NSZ6 Exosome complex exonuclease RRP42-like protein n=1 Tax=Phytophthora infestans T30-4 RepID=D0NSZ6_PHYIN Length = 295 Score = 91.5 bits (226), Expect = 2e-17, Method: Composition-based stats. Identities = 48/254 (18%), Positives = 87/254 (34%), Gaps = 33/254 (12%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVL--VEFGDTKVLCTASIEEGVPRFLKGQGQGW 58 +R GR R ++L + + GS +E T VL + +E P + G Sbjct: 20 VRADGRDRLSYRSLSLETSLLAQSNGSARASLEASGTDVLASVKLEVASP-LPEDPNAGI 78 Query: 59 ITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARAL--------RAAVDLKALGEF 110 + + P + R + +E+ +L+ R L + + Sbjct: 79 VQVDVSCCPSVSAKLYGRAVEELN-----VELSQLMTRLLCSCPSAELEKYCIIPGESVW 133 Query: 111 TITLDCDVLQADGGTRTASITGACVALVDALQKLVE----NGKLKTNPMKGMVAA----- 161 +I++D V ++ G AL D + V G+ KT + AA Sbjct: 134 SISIDVMVFESSGNLPDVISMAIYAALNDTIFPSVRLVGVEGEDKTIEVDTDPAAGKLMM 193 Query: 162 -------VSVGIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEEL 214 V++ + + D E+ M+V + DG + VQ + G EE+ Sbjct: 194 AQQWPICVTLSKIGDYFITDPLQEEELCTTAQMSVAVNPDGNVCGVQKSGNG-SIEMEEM 252 Query: 215 LILLALARGESNPL 228 ++ A S L Sbjct: 253 QQMIDEACARSKDL 266 >UniRef50_Q9ZUI4 T2K10.14 protein n=2 Tax=Embryophyta RepID=Q9ZUI4_ARATH Length = 302 Score = 91.5 bits (226), Expect = 2e-17, Method: Composition-based stats. Identities = 50/263 (19%), Positives = 92/263 (34%), Gaps = 41/263 (15%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +RP GR + R + A+GS L + G T +L +E P +G I Sbjct: 36 LRPDGRQLGKARDTIVNLGLVSTADGSALAKIGSTTMLAAIRMEVMTP-STDSPDEGCIA 94 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAA--VDLKALG------EFTI 112 E+ M P + T A+ I + ++ + ++ +DLK L + Sbjct: 95 IEFHMPPICSPTVRPGRPAEAAPV-----ISKRLSDTILSSGMIDLKELCLVSGKAAWMG 149 Query: 113 TLDCDVLQADGGTRTASITGAC----------VALVDALQKLVENGKLK----------- 151 LD L ADG A++ A VAL D + + G+ Sbjct: 150 YLDIYCLDADGALFDAALLAAVAAFSNLQIPIVALNDNGRIVAVTGEKDQDNALITEKEA 209 Query: 152 ------TNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAE 205 +K + +++ + + D E+S +T + VV+ +++ + Sbjct: 210 VNKEKRKLTLKNIPFSLTCILHKNYILADPTTEEESIMDTLVTVVLDSSDQMVSFYKSGG 269 Query: 206 GEPFTHEELLILLALARGESNPL 228 + + LAR + L Sbjct: 270 AALAYSSAIKSCVELARKRAKEL 292 >UniRef50_A9US69 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9US69_MONBE Length = 256 Score = 91.2 bits (225), Expect = 2e-17, Method: Composition-based stats. Identities = 47/225 (20%), Positives = 77/225 (34%), Gaps = 32/225 (14%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR+ NQ+R ++ A+GS G T V + GVP + + I Sbjct: 12 REDGRAPNQLRELSCDFAVNSAADGSARFRLGQTCVEVSVFGFRGVPVRSELPDRSAIEV 71 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQA 121 + + K E + + A+ + + V+Q Sbjct: 72 SF-----------RGVGGQRKVTDAAAE--NFLRECVDCALQVHEQPRSQCAVAAHVVQD 118 Query: 122 DGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVG-IVNGEAVCDLEYVED 180 DGG A + C+AL+DA PM + VS G + D E Sbjct: 119 DGGVLAALASATCLALLDA-----------GLPMTNVFVGVSSAFDAKGGFLLDPSATE- 166 Query: 181 SAAETDMNVV---MTEDGRIIEVQGTAEGEPFTHEELLILLALAR 222 + A + VV E GR++ + P T +L +L ++ Sbjct: 167 AQASANATVVLSCGAEGGRVLACEQHG---PLTPTQLDYVLQSSQ 208 >UniRef50_B0CRI0 Predicted protein n=6 Tax=Agaricomycotina RepID=B0CRI0_LACBS Length = 284 Score = 90.8 bits (224), Expect = 3e-17, Method: Composition-based stats. Identities = 49/251 (19%), Positives = 92/251 (36%), Gaps = 31/251 (12%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +R GR ++R T+T G V G T+VL + P + +G IT Sbjct: 22 LRLDGRLPLEMRSPTITFGPD---LGWVECGLGKTRVLAQVEAKMVKP-APERPFEGTIT 77 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRA--AVDLKALG------EFTI 112 + P ++ E +G+ + I R++ + L+ AVD ++L + I Sbjct: 78 IHSEISPMASSEY---EPGRGRPSDEEVAITRMLDKVLKRSDAVDKESLCILAGQRVWHI 134 Query: 113 TLDCDVLQADGGTRTASITGACVALVDALQKLVE---NGKLKTNPMKGMVAAVSV----- 164 L L G + AL + VE + + +P+ +++ Sbjct: 135 RLTLHFLADAGNMLDCACLAGITALRHFRRPDVEVVGDEVIVHSPLDRAPVPLAIHHTPF 194 Query: 165 -------GIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLIL 217 + V D +E + +++ + I +Q G P EE+L L Sbjct: 195 CFTFAFFPDITTPPVLDPNQLEQRLSAGLVSIALNAQKEICVLQKLG-GVPLETEEVLSL 253 Query: 218 LALARGESNPL 228 + +A G++ L Sbjct: 254 VNVAVGKAKEL 264 >UniRef50_Q9CRA8 Exosome complex exonuclease RRP46 n=15 Tax=Euteleostomi RepID=EXOS5_MOUSE Length = 235 Score = 90.8 bits (224), Expect = 3e-17, Method: Composition-based stats. Identities = 34/184 (18%), Positives = 56/184 (30%), Gaps = 25/184 (13%) Query: 11 VRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRST 70 +R +N +GS GDT VL V + + + Sbjct: 28 LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEV--------- 78 Query: 71 HTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTASI 130 G G +RL+ A V +IT+ V+ G + Sbjct: 79 ----ILRPKIGLPGVAEKSRERLVRNTCEAVVLGALHPRTSITVVLQVVSDAGSLLACCL 134 Query: 131 TGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV-NGEAVCDLEYVEDSAAETDMNV 189 AC+ALVDA PM+ + V+ + +G V D ++ A + Sbjct: 135 NAACMALVDA-----------GVPMRALFCGVTCALDSDGNLVLDPTTKQEKEARAILTF 183 Query: 190 VMTE 193 + Sbjct: 184 ALDS 187 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_C1DI48 Ribonuclease PH n=157 Tax=Bacteria RepID=RNPH_AZOVD 214 3e-54 UniRef50_D2VEP3 Predicted protein n=1 Tax=Naegleria gruberi RepI... 210 4e-53 UniRef50_Q3ABA6 Polyribonucleotide nucleotidyltransferase n=111 ... 206 4e-52 UniRef50_B6YSI2 Probable exosome complex exonuclease 1 n=33 Tax=... 201 1e-50 UniRef50_B7IE23 Polyribonucleotide nucleotidyltransferase n=3 Ta... 201 2e-50 UniRef50_C0QTM3 Polyribonucleotide nucleotidyltransferase n=6 Ta... 201 2e-50 UniRef50_A8EY33 Ribonuclease PH n=14 Tax=Rickettsieae RepID=RNPH... 200 3e-50 UniRef50_B9MQJ8 Ribonuclease PH n=58 Tax=Bacteria RepID=RNPH_ANATD 198 1e-49 UniRef50_Q2P6N2 Ribonuclease PH n=933 Tax=cellular organisms Rep... 197 2e-49 UniRef50_A2BKC0 Probable exosome complex exonuclease 1 n=32 Tax=... 196 5e-49 UniRef50_Q83HF6 Ribonuclease PH n=17 Tax=Bacteria RepID=RNPH_TROW8 196 6e-49 UniRef50_B9KYR9 Polyribonucleotide nucleotidyltransferase n=53 T... 196 6e-49 UniRef50_B2UNC2 Ribonuclease PH n=3 Tax=Verrucomicrobia RepID=B2... 195 9e-49 UniRef50_Q2JKT3 Ribonuclease PH n=22 Tax=Bacteria RepID=RNPH_SYNJB 195 9e-49 UniRef50_Q1IQ54 Polyribonucleotide nucleotidyltransferase n=96 T... 195 1e-48 UniRef50_C1L2N7 Polyribonucleotide nucleotidyltransferase n=48 T... 194 2e-48 UniRef50_B1I4W9 Ribonuclease PH n=67 Tax=Bacteria RepID=RNPH_DESAP 194 3e-48 UniRef50_A8F725 Polyribonucleotide nucleotidyltransferase n=21 T... 193 4e-48 UniRef50_D0DA55 Ribonuclease PH n=2 Tax=Rhodobacteraceae RepID=D... 192 6e-48 UniRef50_Q9S7G6 Polynucleotide phosphorylase n=36 Tax=cellular o... 192 7e-48 UniRef50_Q9SP08 Exonuclease RRP41 n=15 Tax=Magnoliophyta RepID=Q... 192 8e-48 UniRef50_C9RL26 Polyribonucleotide nucleotidyltransferase n=1 Ta... 191 1e-47 UniRef50_C0R0E0 Polyribonucleotide nucleotidyltransferase n=2 Ta... 191 2e-47 UniRef50_A1KID0 Ribonuclease PH n=18 Tax=Bacteria RepID=RNPH_MYCBP 191 2e-47 UniRef50_A9A5C9 Probable exosome complex exonuclease 1 n=3 Tax=A... 191 2e-47 UniRef50_D1INE0 Whole genome shotgun sequence of line PN40024, s... 190 3e-47 UniRef50_D2L1T8 Polyribonucleotide nucleotidyltransferase n=1 Ta... 189 4e-47 UniRef50_A1UU54 Polyribonucleotide nucleotidyltransferase n=155 ... 189 6e-47 UniRef50_B3EH06 Polyribonucleotide nucleotidyltransferase n=1 Ta... 189 8e-47 UniRef50_B3EMN6 Polyribonucleotide nucleotidyltransferase n=12 T... 188 1e-46 UniRef50_B5Y8I4 Polyribonucleotide nucleotidyltransferase n=1 Ta... 188 1e-46 UniRef50_C7N5E6 Polyribonucleotide nucleotidyltransferase (Polyn... 188 1e-46 UniRef50_Q0AYI2 Polyribonucleotide nucleotidyltransferase n=70 T... 188 2e-46 UniRef50_A0LYC0 Polyribonucleotide nucleotidyltransferase n=86 T... 187 2e-46 UniRef50_Q0SM46 Polyribonucleotide nucleotidyltransferase n=24 T... 187 2e-46 UniRef50_C1A3Y1 Polyribonucleotide nucleotidyltransferase n=2 Ta... 187 2e-46 UniRef50_A9B8G1 Polyribonucleotide nucleotidyltransferase n=38 T... 187 2e-46 UniRef50_Q8GZQ3 Polynucleotide phosphorylase n=19 Tax=cellular o... 187 3e-46 UniRef50_D1AX54 Polyribonucleotide nucleotidyltransferase n=2 Ta... 187 3e-46 UniRef50_A9TY02 Predicted protein n=3 Tax=Viridiplantae RepID=A9... 186 4e-46 UniRef50_A9NGE2 Polyribonucleotide nucleotidyltransferase n=5 Ta... 186 4e-46 UniRef50_C9KNG5 tRNA nucleotidyltransferase n=2 Tax=Firmicutes R... 186 4e-46 UniRef50_Q6PBZ8 Exosc4 protein n=10 Tax=Metazoa RepID=Q6PBZ8_DANRE 186 5e-46 UniRef50_D0WEI7 Polyribonucleotide nucleotidyltransferase n=1 Ta... 186 5e-46 UniRef50_C5A2B8 Probable exosome complex exonuclease 2 n=20 Tax=... 185 6e-46 UniRef50_D1CFI4 Ribonuclease PH n=3 Tax=Bacteria RepID=D1CFI4_THET1 185 7e-46 UniRef50_B5E2A0 Polyribonucleotide nucleotidyltransferase n=202 ... 185 1e-45 UniRef50_C1RJ73 RNAse PH n=1 Tax=Cellulomonas flavigena DSM 2010... 185 1e-45 UniRef50_B7KB81 Ribonuclease PH n=7 Tax=Bacteria RepID=RNPH_CYAP7 185 1e-45 UniRef50_Q8TGX5 Probable exosome complex exonuclease 2 n=8 Tax=A... 185 1e-45 UniRef50_D1Y1M0 Polyribonucleotide nucleotidyltransferase n=1 Ta... 185 1e-45 UniRef50_Q2S1P1 Polyribonucleotide nucleotidyltransferase n=1 Ta... 185 1e-45 UniRef50_D1PLM8 Polyribonucleotide nucleotidyltransferase n=1 Ta... 184 2e-45 UniRef50_C9KKD1 Polyribonucleotide nucleotidyltransferase n=1 Ta... 184 2e-45 UniRef50_C7MNH4 Polyribonucleotide nucleotidyltransferase (Polyn... 183 4e-45 UniRef50_C1TQM6 Polyribonucleotide nucleotidyltransferase (Polyn... 183 4e-45 UniRef50_B9E1K8 Polyribonucleotide nucleotidyltransferase n=15 T... 183 5e-45 UniRef50_Q2GJV5 Polyribonucleotide nucleotidyltransferase n=138 ... 180 2e-44 UniRef50_Q6L223 Ribonuclease PH n=1 Tax=Picrophilus torridus Rep... 180 3e-44 UniRef50_A5VCY9 Polyribonucleotide nucleotidyltransferase n=438 ... 179 7e-44 UniRef50_Q1J1D0 Polyribonucleotide nucleotidyltransferase n=6 Ta... 179 7e-44 UniRef50_B3QZG1 Polyribonucleotide nucleotidyltransferase n=1 Ta... 179 7e-44 UniRef50_Q9NPD3 Exosome complex exonuclease RRP41 n=11 Tax=Coelo... 179 7e-44 UniRef50_B2S4C3 Polyribonucleotide nucleotidyltransferase n=2 Ta... 178 1e-43 UniRef50_D1B019 Polyribonucleotide nucleotidyltransferase n=1 Ta... 178 1e-43 UniRef50_Q72ER6 Polyribonucleotide nucleotidyltransferase n=17 T... 178 1e-43 UniRef50_A7RQ94 Predicted protein n=3 Tax=Eumetazoa RepID=A7RQ94... 178 1e-43 UniRef50_C1CZJ0 Putative tRNA nucleotidyltransferase (Phosphate-... 177 2e-43 UniRef50_C1XM20 Ribonuclease PH n=2 Tax=Meiothermus RepID=C1XM20... 177 2e-43 UniRef50_Q6MDI2 Polyribonucleotide nucleotidyltransferase n=17 T... 177 3e-43 UniRef50_Q7U9I1 Ribonuclease PH n=14 Tax=Cyanobacteria RepID=RNP... 177 3e-43 UniRef50_A7I002 Polyribonucleotide nucleotidyltransferase n=2 Ta... 177 3e-43 UniRef50_Q2GEY8 Polyribonucleotide nucleotidyltransferase n=2 Ta... 176 4e-43 UniRef50_B6K3J3 Exosome complex exonuclease RRP41 n=1 Tax=Schizo... 176 5e-43 UniRef50_B7G0I4 Predicted protein n=2 Tax=Bacillariophyta RepID=... 176 5e-43 UniRef50_C2D8L5 tRNA nucleotidyltransferase n=1 Tax=Atopobium va... 176 6e-43 UniRef50_C3N5R4 Probable exosome complex exonuclease 2 n=12 Tax=... 175 8e-43 UniRef50_Q1G2Y1 Chloroplast polyribonucleotide phosphorylase n=5... 175 8e-43 UniRef50_Q8SYC8 RE67757p n=23 Tax=Coelomata RepID=Q8SYC8_DROME 175 1e-42 UniRef50_A7GX79 Polyribonucleotide nucleotidyltransferase n=17 T... 174 1e-42 UniRef50_B0BXR0 Polyribonucleotide nucleotidyltransferase n=20 T... 174 2e-42 UniRef50_C4R4E4 3'-to-5' phosphorolytic exoribonuclease that is ... 173 4e-42 UniRef50_A9FGR1 Ribonuclease PH n=2 Tax=Bacteria RepID=A9FGR1_SORC5 173 4e-42 UniRef50_B1L6N6 3' exoribonuclease n=1 Tax=Candidatus Korarchaeu... 173 5e-42 UniRef50_A8NCK3 Putative uncharacterized protein n=2 Tax=Agarica... 173 5e-42 UniRef50_UPI000038E13A exosome complex exonuclease Rrp41 n=1 Tax... 172 6e-42 UniRef50_D2EG59 3' exoribonuclease n=1 Tax=Candidatus Parvarchae... 172 6e-42 UniRef50_Q17533 Putative exosome complex exonuclease RRP41 n=4 T... 172 6e-42 UniRef50_Q7V606 Polyribonucleotide nucleotidyltransferase n=50 T... 172 6e-42 UniRef50_Q6L224 Ribonuclease PH n=2 Tax=Thermoplasmatales RepID=... 172 6e-42 UniRef50_Q54EU6 Putative uncharacterized protein n=1 Tax=Dictyos... 172 9e-42 UniRef50_A8XLU8 Putative uncharacterized protein n=2 Tax=Caenorh... 172 1e-41 UniRef50_Q9RU11 Ribonuclease PH n=2 Tax=Deinococcus RepID=RNPH_D... 172 1e-41 UniRef50_B9MZ65 Predicted protein n=6 Tax=Magnoliophyta RepID=B9... 172 1e-41 UniRef50_B8D6B8 Probable exosome complex exonuclease 2 n=1 Tax=D... 171 1e-41 UniRef50_Q8TCS8 Polyribonucleotide nucleotidyltransferase 1, mit... 171 2e-41 UniRef50_D0NT61 Exosome complex exonuclease RRP41-like protein n... 171 2e-41 UniRef50_C7LKG2 Putative polyribonucleotide nucleotidyltransfera... 171 2e-41 UniRef50_B7ATJ6 Putative uncharacterized protein n=2 Tax=Bacteri... 170 3e-41 UniRef50_UPI00006A4B1C PREDICTED: similar to LOC495942 protein n... 170 3e-41 UniRef50_Q30TH2 Polyribonucleotide nucleotidyltransferase n=19 T... 170 4e-41 UniRef50_B1ZS98 Polyribonucleotide nucleotidyltransferase n=7 Ta... 170 4e-41 UniRef50_A8Z660 Polyribonucleotide nucleotidyltransferase n=4 Ta... 169 5e-41 UniRef50_O42872 Exosome complex component ski6 n=1 Tax=Schizosac... 169 5e-41 UniRef50_C7SB59 Exosome component 9 n=1 Tax=Platynereis dumerili... 169 7e-41 UniRef50_Q7VIL0 Polyribonucleotide nucleotidyltransferase n=2 Ta... 169 7e-41 UniRef50_Q7UR95 Polyribonucleotide nucleotidyltransferase n=5 Ta... 168 1e-40 UniRef50_A4RTW2 Predicted protein n=4 Tax=cellular organisms Rep... 168 2e-40 UniRef50_C4LJ74 Polyribonucleotide nucleotidyltransferase n=28 T... 167 4e-40 UniRef50_A8PS54 3' exoribonuclease family, domain 2 containing p... 166 4e-40 UniRef50_Q96B26 Exosome complex exonuclease RRP43 n=43 Tax=Metaz... 166 5e-40 UniRef50_A5URV5 Polyribonucleotide nucleotidyltransferase n=11 T... 166 5e-40 UniRef50_B3T6G7 Putative 3' exoribonuclease family, domain 1 n=1... 166 6e-40 UniRef50_C1E1G7 Predicted protein n=2 Tax=Micromonas RepID=C1E1G... 166 6e-40 UniRef50_Q9ZK11 Polyribonucleotide nucleotidyltransferase n=13 T... 166 6e-40 UniRef50_A1RXQ5 Ribosomal RNA-processing protein RRP42 n=1 Tax=T... 165 7e-40 UniRef50_Q2NEX4 Putative exosome complex, exonuclease 2 subunit ... 165 9e-40 UniRef50_Q965N3 Putative uncharacterized protein n=2 Tax=Caenorh... 165 9e-40 UniRef50_Q4JV61 Polyribonucleotide nucleotidyltransferase n=37 T... 165 1e-39 UniRef50_B7GNH2 Polyribonucleotide nucleotidyltransferase n=30 T... 165 1e-39 UniRef50_A0LV20 Polyribonucleotide nucleotidyltransferase n=63 T... 165 1e-39 UniRef50_C7DI01 3' exoribonuclease n=1 Tax=Candidatus Micrarchae... 165 1e-39 UniRef50_A9A5D0 3' exoribonuclease n=4 Tax=Thaumarchaeota RepID=... 165 1e-39 UniRef50_B9XS52 Polyribonucleotide nucleotidyltransferase (Fragm... 164 3e-39 UniRef50_O26778 Probable exosome complex exonuclease 2 n=5 Tax=M... 163 4e-39 UniRef50_Q6CA11 YALI0D06776p n=12 Tax=Saccharomycetales RepID=Q6... 163 4e-39 UniRef50_Q469M2 Ribosomal RNA-processing protein RRP42 n=5 Tax=A... 163 4e-39 UniRef50_D2UZQ3 3'-5' exoribonuclease/RNA-binding protein-like p... 162 8e-39 UniRef50_D0NP71 Exosome complex exonuclease MTR3-like protein n=... 162 1e-38 UniRef50_B3TBC7 Putative 3' exoribonuclease family, domain 1 n=1... 161 1e-38 UniRef50_A2RVK7 At4g27490 n=9 Tax=Magnoliophyta RepID=A2RVK7_ARATH 161 1e-38 UniRef50_Q4SLK0 Chromosome 15 SCAF14556, whole genome shotgun se... 161 2e-38 UniRef50_C3XH48 Polyribonucleotide nucleotidyltransferase n=1 Ta... 161 2e-38 UniRef50_UPI0001925525 PREDICTED: similar to predicted protein n... 161 2e-38 UniRef50_Q8ZVN0 Probable exosome complex exonuclease 2 n=5 Tax=T... 160 2e-38 UniRef50_B8C7U5 Putative uncharacterized protein (Fragment) n=1 ... 160 3e-38 UniRef50_B0WG77 Polyribonucleotide nucleotidyltransferase 1, mit... 160 4e-38 UniRef50_D2V2H2 Predicted protein n=1 Tax=Naegleria gruberi RepI... 160 4e-38 UniRef50_C1EGG8 Predicted protein n=2 Tax=Micromonas RepID=C1EGG... 159 5e-38 UniRef50_A4RT74 Predicted protein n=2 Tax=Ostreococcus RepID=A4R... 158 1e-37 UniRef50_UPI0001926EAD PREDICTED: similar to 3 exoribonuclease n... 158 2e-37 UniRef50_A6DU91 Polynucleotide phosphorylase/polyadenylase n=1 T... 157 3e-37 UniRef50_C3Z2F7 Putative uncharacterized protein (Fragment) n=4 ... 157 4e-37 UniRef50_Q6P0I8 Exosome complex exonuclease MTR3 n=5 Tax=Euteleo... 157 4e-37 UniRef50_UPI000180B7A0 PREDICTED: similar to Exosome component 9... 156 6e-37 UniRef50_Q8T4A9 Rrp45 n=2 Tax=melanogaster group RepID=Q8T4A9_DROME 155 9e-37 UniRef50_Q55BJ2 Putative uncharacterized protein n=1 Tax=Dictyos... 155 1e-36 UniRef50_A7RP27 Predicted protein (Fragment) n=1 Tax=Nematostell... 155 1e-36 UniRef50_B4Q1V5 GE15642 n=8 Tax=Drosophila RepID=B4Q1V5_DROYA 154 2e-36 UniRef50_Q17NN4 Exosome complex exonuclease rrp43 (Ribosomal RNA... 154 2e-36 UniRef50_Q9YC05 Probable exosome complex exonuclease 2 n=4 Tax=D... 154 2e-36 UniRef50_A8MA85 3' exoribonuclease n=1 Tax=Caldivirga maquilinge... 154 3e-36 UniRef50_D2VE23 3' exoribonuclease domain-containing protein n=1... 153 4e-36 UniRef50_C7DI02 3' exoribonuclease n=1 Tax=Candidatus Micrarchae... 153 5e-36 UniRef50_Q5TMQ4 AGAP011906-PA n=4 Tax=Culicidae RepID=Q5TMQ4_ANOGA 153 6e-36 UniRef50_D2A0W4 Putative uncharacterized protein GLEAN_08282 n=3... 152 8e-36 UniRef50_B0ERA1 Exosome complex exonuclease RRP41, putative n=2 ... 151 1e-35 UniRef50_UPI000186F240 conserved hypothetical protein n=1 Tax=Pe... 151 2e-35 UniRef50_Q74NF6 NEQ248 n=1 Tax=Nanoarchaeum equitans RepID=Q74NF... 151 2e-35 UniRef50_B5S2C1 Polyribonucleotide nucleotidyltransferase protei... 150 3e-35 UniRef50_Q0IT44 Os11g0311300 protein (Fragment) n=11 Tax=Magnoli... 150 3e-35 UniRef50_Q9LX74 AT3G46210 protein n=8 Tax=Embryophyta RepID=Q9LX... 149 6e-35 UniRef50_Q10205 Exosome complex component rrp43 n=1 Tax=Schizosa... 149 7e-35 UniRef50_B7GAV6 Predicted protein n=2 Tax=Bacillariophyta RepID=... 149 9e-35 UniRef50_B6AK41 3' exoribonuclease family protein, putative n=1 ... 149 1e-34 UniRef50_B4LC44 GJ11305 n=2 Tax=Drosophila RepID=B4LC44_DROVI 148 1e-34 UniRef50_UPI00015B5B6C PREDICTED: similar to ENSANGP00000009222 ... 148 2e-34 UniRef50_UPI0000DB70B0 PREDICTED: similar to exosome component 9... 148 2e-34 UniRef50_B6K5V8 Exosome complex exonuclease RRP43 n=1 Tax=Schizo... 148 2e-34 UniRef50_Q9M209 Nucleolar autoantigen-like protein n=15 Tax=Embr... 147 2e-34 UniRef50_B0CRI0 Predicted protein n=6 Tax=Agaricomycotina RepID=... 147 2e-34 UniRef50_B5XC68 Exosome complex exonuclease MTR3 n=2 Tax=Euteleo... 147 3e-34 UniRef50_A2DCK7 3' exoribonuclease family, domain 1 containing p... 147 3e-34 UniRef50_UPI0000D569CA PREDICTED: similar to exosomal 3-5 exorib... 147 3e-34 UniRef50_UPI000192764A PREDICTED: similar to Exosome component 8... 146 4e-34 UniRef50_A8IE44 3'-5' exoribonuclease PH component of the exosom... 146 4e-34 UniRef50_B2AVV7 Predicted CDS Pa_7_1650 n=9 Tax=Leotiomyceta Rep... 145 8e-34 UniRef50_UPI00006CFE64 3'''' exoribonuclease family, domain 1 co... 145 8e-34 UniRef50_UPI000180CDA2 PREDICTED: similar to Exosome complex exo... 145 9e-34 UniRef50_Q4P9I6 Putative uncharacterized protein n=1 Tax=Ustilag... 145 1e-33 UniRef50_B3T6G8 Putative 3' exoribonuclease family, domain 1 n=1... 145 1e-33 UniRef50_UPI0000E45C6E PREDICTED: similar to SCL75 protein n=1 T... 145 1e-33 UniRef50_Q84T68 Os03g0854200 protein n=9 Tax=Magnoliophyta RepID... 145 1e-33 UniRef50_Q5BZN7 SJCHGC06185 protein (Fragment) n=1 Tax=Schistoso... 144 2e-33 UniRef50_Q15024 Exosome complex exonuclease RRP42 n=27 Tax=Eumet... 144 2e-33 UniRef50_Q7QBX4 AGAP002348-PA (Fragment) n=2 Tax=Endopterygota R... 144 3e-33 UniRef50_UPI000192526B PREDICTED: similar to predicted protein n... 144 3e-33 UniRef50_B0CZF3 Predicted protein n=1 Tax=Laccaria bicolor S238N... 144 3e-33 UniRef50_P46948 Exosome complex component SKI6 n=12 Tax=Saccharo... 143 4e-33 UniRef50_D0MYG3 Polyribonucleotide nucleotidyltransferase, putat... 142 6e-33 UniRef50_B3L6X6 Exosome complex exonuclease, putative n=5 Tax=Pl... 142 8e-33 UniRef50_C4Q0C5 Ribonuclease pH related n=1 Tax=Schistosoma mans... 142 1e-32 UniRef50_UPI000186CF32 Exosome complex exonuclease RRP43, putati... 142 1e-32 UniRef50_C4WV26 ACYPI003501 protein n=2 Tax=Acyrthosiphon pisum ... 141 2e-32 UniRef50_A9VBQ1 Predicted protein n=2 Tax=Fungi/Metazoa group Re... 140 4e-32 UniRef50_A0D7C7 Chromosome undetermined scaffold_4, whole genome... 140 4e-32 UniRef50_Q54CU6 Putative uncharacterized protein n=1 Tax=Dictyos... 139 5e-32 UniRef50_C1EDA5 Predicted protein n=1 Tax=Micromonas sp. RCC299 ... 138 1e-31 UniRef50_O74918 Exosome complex component rrp45 n=2 Tax=Schizosa... 138 2e-31 UniRef50_D2UXP2 Exosome complex exonuclease RRP43 n=1 Tax=Naegle... 138 2e-31 UniRef50_Q54Q83 Putative uncharacterized protein n=1 Tax=Dictyos... 138 2e-31 UniRef50_C1GBF4 Exosome complex exonuclease RRP45 n=14 Tax=Eurot... 137 4e-31 UniRef50_Q20128 Exosome (Multiexonuclease complex) component pro... 137 4e-31 UniRef50_B7PUF0 Exosomal 3'-5' exoribonuclease complex, subunit ... 137 4e-31 UniRef50_UPI000186CA51 Exosome complex exonuclease RRP45, putati... 136 4e-31 UniRef50_Q06265 Exosome complex exonuclease RRP45 n=46 Tax=Metaz... 136 5e-31 UniRef50_B3S9X0 Putative uncharacterized protein n=1 Tax=Trichop... 136 5e-31 UniRef50_A9USE9 Predicted protein n=1 Tax=Monosiga brevicollis R... 136 6e-31 UniRef50_B6ACS1 3' exoribonuclease protein, putative n=1 Tax=Cry... 136 6e-31 UniRef50_Q9SSE1 MLP3.20 protein n=17 Tax=Embryophyta RepID=Q9SSE... 135 9e-31 UniRef50_UPI0001793368 PREDICTED: similar to Exosome complex exo... 135 9e-31 UniRef50_B6AFR7 3' exoribonuclease family protein, putative n=1 ... 135 1e-30 UniRef50_Q55BB0 Putative uncharacterized protein n=1 Tax=Dictyos... 134 2e-30 UniRef50_C1E415 Predicted protein (Fragment) n=2 Tax=Micromonas ... 134 2e-30 UniRef50_UPI0000522EB2 PREDICTED: similar to Exosome complex exo... 134 2e-30 UniRef50_A7SMZ0 Predicted protein n=2 Tax=Metazoa RepID=A7SMZ0_N... 134 3e-30 UniRef50_D0N9X4 Exosome complex exonuclease RRP43, putative n=1 ... 133 4e-30 UniRef50_Q4DZV2 Ribosomal RNA processing protein 41A, putative n... 133 5e-30 UniRef50_C5KIM5 Exosome complex exonuclease RRP41, putative n=2 ... 133 6e-30 UniRef50_A7RZV7 Predicted protein n=2 Tax=Eumetazoa RepID=A7RZV7... 132 7e-30 UniRef50_C4LZA9 Exosome complex exonuclease, putative n=2 Tax=En... 132 1e-29 UniRef50_B6KQ03 3' exoribonuclease, putative n=3 Tax=Toxoplasma ... 132 1e-29 UniRef50_B3S0I5 Putative uncharacterized protein n=1 Tax=Trichop... 131 1e-29 UniRef50_C4WW91 ACYPI010191 protein n=1 Tax=Acyrthosiphon pisum ... 130 2e-29 UniRef50_B6H218 Pc13g03690 protein n=10 Tax=Trichocomaceae RepID... 130 3e-29 UniRef50_A4RUD5 Predicted protein n=2 Tax=Ostreococcus RepID=A4R... 130 3e-29 UniRef50_Q5CYG9 RRP45-like archaeo-eukaryotic exosomal rnase, PH... 130 3e-29 UniRef50_B2AAV3 Predicted CDS Pa_1_5280 n=11 Tax=Leotiomyceta Re... 130 3e-29 UniRef50_D0NSZ6 Exosome complex exonuclease RRP42-like protein n... 130 3e-29 UniRef50_B7QNK0 Exosomal 3'-5' exoribonuclease complex, subunit ... 130 3e-29 UniRef50_UPI0001925D3D PREDICTED: similar to predicted protein n... 130 5e-29 UniRef50_B6HC09 Pc18g05170 protein n=25 Tax=Leotiomyceta RepID=B... 129 5e-29 UniRef50_Q8ILI7 Exosome complex exonuclease rrp41, putative n=6 ... 129 6e-29 UniRef50_Q8ID62 Exosome complex exonuclease, putative n=1 Tax=Pl... 128 1e-28 UniRef50_Q01D77 Putative polynucleotide phosphorylase (ISS) n=1 ... 128 2e-28 UniRef50_D2VA88 Predicted protein n=1 Tax=Naegleria gruberi RepI... 127 2e-28 UniRef50_Q9ZUI4 T2K10.14 protein n=2 Tax=Embryophyta RepID=Q9ZUI... 127 3e-28 UniRef50_UPI0000522388 PREDICTED: similar to predicted protein i... 127 4e-28 UniRef50_Q05636 Exosome complex component RRP45 n=17 Tax=Sacchar... 127 4e-28 UniRef50_C1M111 Exosome complex exonuclease rrp42 (Ribosomal rna... 126 5e-28 UniRef50_C1C167 Exosome complex exonuclease RRP45 n=4 Tax=Caligi... 126 6e-28 UniRef50_Q7QK69 AGAP002177-PA (Fragment) n=1 Tax=Anopheles gambi... 126 7e-28 UniRef50_C4R631 Protein involved in rRNA processing n=2 Tax=Sacc... 125 8e-28 UniRef50_C1BRT2 Exosome complex exonuclease RRP43 n=1 Tax=Caligu... 125 9e-28 UniRef50_Q29QQ9 Rrp42 n=25 Tax=Coelomata RepID=Q29QQ9_DROME 125 9e-28 UniRef50_Q23PW9 3' exoribonuclease family, domain 1 containing p... 125 1e-27 UniRef50_UPI00005A29C6 PREDICTED: similar to Exosome complex exo... 125 1e-27 UniRef50_Q5CPV0 Archeo-eukaryotic exosomal RNAse n=2 Tax=Cryptos... 125 1e-27 UniRef50_A7AQY6 Exosome complex exonuclease rrp41, putative n=1 ... 125 2e-27 UniRef50_B0XFZ4 Exosome complex exonuclease RRP46 n=2 Tax=Culici... 124 2e-27 Sequences not found previously or not previously below threshold: >UniRef50_C1DI48 Ribonuclease PH n=157 Tax=Bacteria RepID=RNPH_AZOVD Length = 239 Score = 214 bits (544), Expect = 3e-54, Method: Composition-based stats. Identities = 157/227 (69%), Positives = 187/227 (82%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 RP+GR+ +Q+RP+ +TRNYT+HAEGSVLVEFGDT+V+CT S E GVPRFLKGQG+GW+TA Sbjct: 3 RPSGRAPHQLRPIRITRNYTRHAEGSVLVEFGDTRVICTVSAEAGVPRFLKGQGKGWLTA 62 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQA 121 EYGMLPR+T R AREA++G+QGGRT+EIQRLI R+LRAA+D+ LGE T+ +DCDV+QA Sbjct: 63 EYGMLPRATGERMAREASRGRQGGRTLEIQRLIGRSLRAALDMSKLGENTLYVDCDVIQA 122 Query: 122 DGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDS 181 DGGTRTASITGA VALVDAL L + G LK +P+K MVAAVSVGI GE + DL+Y EDS Sbjct: 123 DGGTRTASITGAMVALVDALAVLKKRGALKGDPLKQMVAAVSVGIYQGEPILDLDYPEDS 182 Query: 182 AAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 AETD+NVVMT+ G IEVQGTAEGEPF EEL +LALA L Sbjct: 183 DAETDLNVVMTDAGGFIEVQGTAEGEPFQPEELNAMLALATQGIREL 229 >UniRef50_D2VEP3 Predicted protein n=1 Tax=Naegleria gruberi RepID=D2VEP3_NAEGR Length = 248 Score = 210 bits (534), Expect = 4e-53, Method: Composition-based stats. Identities = 59/230 (25%), Positives = 98/230 (42%), Gaps = 20/230 (8%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPR-FLKGQGQGWI 59 +R GR ++++R + N A+GS E G+T+VL V + I Sbjct: 13 LRVDGRRSHEIRNIKFKLNLFSRADGSAYYEQGNTRVLAAVYGPREVKNKSQMKNDRAII 72 Query: 60 TAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVL 119 EY M ST R + K+ R+ EI +I + + + I + VL Sbjct: 73 NCEYSMATFSTGERKRQF----KKDRRSTEISVVIRQTFESVILTHLYPRTQIDIFMQVL 128 Query: 120 QADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVE 179 QADGGTR A I A +AL+DA PMK V + + G + G + DL Y+E Sbjct: 129 QADGGTRCACINAATLALLDA-----------GIPMKDFVVSCAAGFIQGSPLTDLNYIE 177 Query: 180 DSAAETDMNVV-MTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 D A D+ + + + ++ +Q ++ + ++ +L A + Sbjct: 178 DCAGGPDVPIALLPKHDKVTLLQMDSK---LSLDQFEKVLEHAIEGCKQI 224 >UniRef50_Q3ABA6 Polyribonucleotide nucleotidyltransferase n=111 Tax=Bacteria RepID=PNP_CARHZ Length = 731 Score = 206 bits (525), Expect = 4e-52, Method: Composition-based stats. Identities = 57/236 (24%), Positives = 96/236 (40%), Gaps = 24/236 (10%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTAS----IEEGVPRFLKGQGQ 56 +R GR ++VRP+ GS L G T+VL + + + L + Sbjct: 325 IRIDGRKTDEVRPIWCEVGLLPRTHGSGLFTRGQTQVLSIVTLGAVGDVQILDDLGIEES 384 Query: 57 GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 Y P S G R + L RAL + + + +TI + Sbjct: 385 KRFMHHYNFPPYSVGEVRPMRG----PGRREIGHGALAERALEPVIPPEEVFPYTIRIVS 440 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNG----EAV 172 +VL+++G T S+ G+ +AL+DA P+K VA V++G++ + Sbjct: 441 EVLESNGSTSMGSVCGSTLALMDA-----------GVPIKAPVAGVAMGLIKEGDEVAIL 489 Query: 173 CDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 D++ +ED+ + D V T+DG I +Q + T + L LA AR + Sbjct: 490 TDIQGIEDALGDMDFKVAGTKDG-ITALQMDIKIAGVTRDILTKALAQAREGRMHI 544 Score = 77.4 bits (189), Expect = 4e-13, Method: Composition-based stats. Identities = 48/219 (21%), Positives = 77/219 (35%), Gaps = 19/219 (8%) Query: 12 RPVTLTRN-YTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRST 70 RP+ LT A GSVLV +GDT VL TA+ + + +T +Y + Sbjct: 17 RPLKLTAGKVATQASGSVLVSYGDTVVLVTATGSKEPREGIDFFP---LTVDYEERFYAV 73 Query: 71 HTRNARE-AAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTAS 129 +G+ + + RLI R +R + I + D A+ Sbjct: 74 GKIPGGFIKREGRPSEKAILSARLIDRPIRPLFPKGFKNDVHIVATVLSVNQDNPPEIAA 133 Query: 130 ITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNV 189 + GA AL L P G + AV VG+V E V + + + + V Sbjct: 134 MNGASAAL-----------TLSHLPFLGPIGAVVVGLVEDELVINPTIEQAEKSRLHLVV 182 Query: 190 VMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 T D + A + E ++ + E + Sbjct: 183 AGTRD---AVMMVEAGAQEVPEEIMIEAITRGHEEVKKI 218 >UniRef50_B6YSI2 Probable exosome complex exonuclease 1 n=33 Tax=Archaea RepID=ECX1_THEON Length = 249 Score = 201 bits (512), Expect = 1e-50, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 103/229 (44%), Gaps = 21/229 (9%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGV-PRFLKGQGQGWIT 60 R GR ++RP+ + K+A+GS VE+G K+L + P+ L+ + + Sbjct: 17 RIDGRKKYELRPIKMEVGVLKNADGSAYVEWGKNKILAAVYGPREIHPKHLQRPDRAILR 76 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 Y M P S R R++EI ++I AL A+ L+ I + +VLQ Sbjct: 77 VRYNMAPFSVEERKKPG-----PDRRSVEISKVIRGALEPALILEMFPRTAIDIFIEVLQ 131 Query: 121 ADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVED 180 AD GTR A IT A +AL DA PM+ +VAA + G + GE V DL ED Sbjct: 132 ADAGTRVAGITAASLALADA-----------GIPMRDLVAACAAGKIEGEIVLDLNKEED 180 Query: 181 SAAETDMNVV-MTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 + E D+ V M I +Q T +E + + LA + + Sbjct: 181 NYGEADVPVAIMPLKNDITLLQMDGY---LTRDEFIEAVRLAIKGAKAV 226 >UniRef50_B7IE23 Polyribonucleotide nucleotidyltransferase n=3 Tax=Bacteria RepID=PNP_THEAB Length = 697 Score = 201 bits (510), Expect = 2e-50, Method: Composition-based stats. Identities = 51/236 (21%), Positives = 94/236 (39%), Gaps = 24/236 (10%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQ 56 +R GR +++RP+T GS L G+T+ L ++ EE + + +G Sbjct: 320 IRADGRKVDEIRPITCEVGVLPRTHGSALFTRGETQSLGIVTLGAPMEEQIVDTIMEEGT 379 Query: 57 GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 Y P S G R + L RAL+A V + + + + Sbjct: 380 KRFILHYNFPPFSVGEVKPLRG----PGRREIGHGHLAERALKAVVPSEEEFPYVVRVVS 435 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV----NGEAV 172 ++L+++G + A++ +AL+DA P++ VA V++G++ + Sbjct: 436 EILESNGSSSMATVCSGSLALMDA-----------GVPIRTHVAGVAMGLIIEDGQEVVL 484 Query: 173 CDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 D++ +ED + D V T +G I Q + E L L A+ + Sbjct: 485 TDIQGLEDHWGDMDFKVAGTRNG-ITAFQMDCKVAGVGEELLKRALQQAKEARMKI 539 Score = 90.5 bits (223), Expect = 4e-17, Method: Composition-based stats. Identities = 52/221 (23%), Positives = 86/221 (38%), Gaps = 23/221 (10%) Query: 12 RPVTLTRN-YTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRST 70 R + + K + GSV V+FGD+ VL TA+I + + +T EY + Sbjct: 13 RKMIVQHGKVAKQSAGSVWVQFGDSVVLATANISDRTIEGVDFVP---LTVEYQEKFYAA 69 Query: 71 HTRNARE-AAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRT-- 127 +GK + RLI R +R + L VL DG T Sbjct: 70 GKIPGGFIKREGKPSESAILSARLIDRPIRPLFP--KYLRNDVQLIVTVLSVDGNTPPDV 127 Query: 128 ASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDM 187 I A +AL + P +G+VA V +G V+G+ V E+ ++ + Sbjct: 128 TGIIAASLAL-----------NISKIPFEGIVAGVRLGYVDGKFVVFPT--EEQLEKSRL 174 Query: 188 NVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 ++V+ I + E + T EE++ L +A + Sbjct: 175 DIVVAGSKDAITMV-EGEAKEVTEEEMVNALMVAHDAIKQI 214 >UniRef50_C0QTM3 Polyribonucleotide nucleotidyltransferase n=6 Tax=Aquificales RepID=PNP_PERMH Length = 709 Score = 201 bits (510), Expect = 2e-50, Method: Composition-based stats. Identities = 46/237 (19%), Positives = 90/237 (37%), Gaps = 25/237 (10%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQG----- 55 +R GR +++RP+ + GS + G T+ ++ ++ Sbjct: 317 VRIDGRRPDEIRPIWIRTGLFPRIHGSAIFTRGQTQAFVATTLGAPGEEQIEESIEEGEE 376 Query: 56 QGWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLD 115 + Y P ST R + L RA+ + + + I + Sbjct: 377 KKRFMLHYNFPPFSTGEARPPR----APSRREIGHGNLAERAIEPLIPDEEEFPYVIRVV 432 Query: 116 CDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV----NGEA 171 ++L+++G T A++ GA ++L DA PMK VA +++G++ + Sbjct: 433 SEILESNGSTSMATVCGASLSLFDA-----------GVPMKKHVAGIAMGLLKEDDDYVI 481 Query: 172 VCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 + D+ ED + D V T DG + +Q + + + E L L A+ + Sbjct: 482 LTDILGDEDHLGDMDFKVAGTRDG-VTSIQMDIKIKGLSKEILQEALEQAKKARMHI 537 Score = 68.5 bits (166), Expect = 2e-10, Method: Composition-based stats. Identities = 43/185 (23%), Positives = 72/185 (38%), Gaps = 18/185 (9%) Query: 13 PVTLTRNYT-KHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTH 71 P+++ Y K + G+V+V G+T V A I E + +T +Y + Sbjct: 20 PISIETGYFAKQSNGAVIVRQGETAVFVAAVISEEAQADIDFLP---LTVDYREKTYAYG 76 Query: 72 TRNARE-AAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTA-S 129 +GK R + + RLI R +R K I + D + Sbjct: 77 KIPGGFVKREGKPTVREILVSRLIDRPIRPMFP-KGFFNDVIITAMTLSADDKYDPDVLA 135 Query: 130 ITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNV 189 I GA AL + P +G VA V V ++GE + + Y + + ++ D+ V Sbjct: 136 IVGASAALH-----------ITEAPFEGPVAGVRVCRLDGEFIVNPTYEQRNRSDIDIVV 184 Query: 190 VMTED 194 T+D Sbjct: 185 AGTKD 189 >UniRef50_A8EY33 Ribonuclease PH n=14 Tax=Rickettsieae RepID=RNPH_RICCK Length = 239 Score = 200 bits (508), Expect = 3e-50, Method: Composition-based stats. Identities = 124/228 (54%), Positives = 164/228 (71%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 MR +GR +NQ+RP++L + +AEGS L++ G T V+C+A+ E VP FL+GQ QGW+T Sbjct: 1 MRQSGRKSNQLRPISLELSPLVNAEGSCLIKIGKTHVICSATCETTVPPFLRGQNQGWVT 60 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 AEYGMLP ST R REA GKQGGRT EIQRLI RA+R +DLK LGE I +DCDV+ Sbjct: 61 AEYGMLPSSTSQRIKREAVLGKQGGRTQEIQRLIGRAMRCVIDLKKLGERQIIIDCDVIN 120 Query: 121 ADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVED 180 ADGGTRTA+ITG+ +AL A++ L++ LK NP+ +AA+S GI GE + DL+Y+ED Sbjct: 121 ADGGTRTAAITGSYIALHLAIRLLMKKSILKVNPLISQIAAISCGIYKGETILDLDYLED 180 Query: 181 SAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 S AE D+N V +G +IEVQGTAE +PF+ E+ L +L LA+ + L Sbjct: 181 SDAEVDINFVFAGNGNLIEVQGTAEKKPFSEEQFLAMLKLAKVGAAEL 228 >UniRef50_B9MQJ8 Ribonuclease PH n=58 Tax=Bacteria RepID=RNPH_ANATD Length = 258 Score = 198 bits (503), Expect = 1e-49, Method: Composition-based stats. Identities = 122/228 (53%), Positives = 161/228 (70%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 MR R+ N++RP+ +TRN+ K+AEGS L+E G+TKV+ TA+I++ VP F KG G+GWIT Sbjct: 1 MRQDQRAYNEIRPIKITRNFIKYAEGSCLIEMGNTKVIVTATIDDKVPPFKKGSGEGWIT 60 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 AEY MLPR+T RN R+ K + GR+ EIQRLI RALRA ++ KALGE I +DCDV+Q Sbjct: 61 AEYSMLPRATQQRNVRDINKLRLSGRSHEIQRLIGRALRAGINFKALGERVIIIDCDVIQ 120 Query: 121 ADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVED 180 ADGGTRTASITG +A+ DA +KL + ++ P+ VAAVSVGI +G + DL + ED Sbjct: 121 ADGGTRTASITGGFIAMFDACKKLYDEKIIENFPVTDFVAAVSVGICDGVEMLDLCFEED 180 Query: 181 SAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 S A DMN+VM + G IE+QGTAEG PF+ E+ LL L + + Sbjct: 181 SKAAVDMNLVMNDKGEFIEIQGTAEGAPFSWEQFQKLLELGKQGIQKI 228 >UniRef50_Q2P6N2 Ribonuclease PH n=933 Tax=cellular organisms RepID=RNPH_XANOM Length = 241 Score = 197 bits (502), Expect = 2e-49, Method: Composition-based stats. Identities = 153/227 (67%), Positives = 181/227 (79%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 RP+GR+ +Q+RPV + R +T+HAEGSVLV FGDT VLCTAS+E VP FL+G+G+GW+TA Sbjct: 5 RPSGRTADQLRPVRIERAFTRHAEGSVLVSFGDTHVLCTASVENRVPNFLRGKGEGWVTA 64 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQA 121 EYGMLPRSTHTR+ REAA+GKQGGRT+EIQRLI RALRA VD ALGE TITLDCDVLQA Sbjct: 65 EYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCDVLQA 124 Query: 122 DGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDS 181 DGGTRTA+ITGA VAL DA+ L++ G++K +P+ G VAAVSVGI GE V DL+Y EDS Sbjct: 125 DGGTRTAAITGAYVALADAVNLLLKRGEIKKHPLIGAVAAVSVGIYRGEPVLDLDYPEDS 184 Query: 182 AAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 +TDMNVVM + G IE+QGTAEG F +EL LLALA L Sbjct: 185 DCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELNALLALAEKGMGDL 231 >UniRef50_A2BKC0 Probable exosome complex exonuclease 1 n=32 Tax=Archaea RepID=ECX1_HYPBU Length = 255 Score = 196 bits (498), Expect = 5e-49, Method: Composition-based stats. Identities = 75/230 (32%), Positives = 111/230 (48%), Gaps = 21/230 (9%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGV-PRFLKGQGQGWI 59 +R GR Q+RP+ + +A+GS LVE+G T+V+ PR + + I Sbjct: 24 IRHDGRLPEQLRPIRMEVGVLSNADGSALVEYGGTRVIAAVYGPREAHPRHVALPDRAII 83 Query: 60 TAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVL 119 Y M P ST R R +E+ ++I AL A V + I + +VL Sbjct: 84 RCRYHMAPFSTAERKTP-----APTRREVELSKVIREALEAVVISELYPRTAIDVYMEVL 138 Query: 120 QADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVE 179 Q+DGGTRTA+IT A +AL DA M+ +VA V+VG V+G V D++ +E Sbjct: 139 QSDGGTRTAAITAASLALADA-----------GIAMRDLVAGVAVGKVDGVLVLDIDEIE 187 Query: 180 DSAAETDMNVVM-TEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 D+ AE DM V M +++ +Q TH+E + L LAR + Sbjct: 188 DNYAEADMPVAMAPSLDKVLLLQLNGV---LTHDEFVKALELARKGIQVI 234 >UniRef50_Q83HF6 Ribonuclease PH n=17 Tax=Bacteria RepID=RNPH_TROW8 Length = 247 Score = 196 bits (497), Expect = 6e-49, Method: Composition-based stats. Identities = 114/228 (50%), Positives = 157/228 (68%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +R R+++++RPV + R + +AEGS L+ FG+T+VLC A+ + GVP FL+GQ GWIT Sbjct: 11 LRKNSRAHDEIRPVKIIRGWNIYAEGSALIAFGNTRVLCNATFQRGVPPFLRGQRSGWIT 70 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 AEY MLPRS R+ RE+ KGK GR+ EI RLI R++RA +D AL E TI LDCDVLQ Sbjct: 71 AEYAMLPRSGTERSDRESVKGKISGRSHEISRLIGRSMRAILDRYALEENTIILDCDVLQ 130 Query: 121 ADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVED 180 ADGGTRTA+ITG+ +AL DAL L +P+ V+AVSVG+V + DL+Y ED Sbjct: 131 ADGGTRTAAITGSYIALYDALVWAKNQKILSKHPLTDSVSAVSVGLVGDQIFLDLDYSED 190 Query: 181 SAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 S A+ D+N+V T G+++E+QGTAE PF++ + ++ LA+ L Sbjct: 191 SNAQADINLVFTGSGKLVEIQGTAEKSPFSYGQFEQMMELAKTGCQAL 238 >UniRef50_B9KYR9 Polyribonucleotide nucleotidyltransferase n=53 Tax=Bacteria RepID=PNP_THERP Length = 790 Score = 196 bits (497), Expect = 6e-49, Method: Composition-based stats. Identities = 59/234 (25%), Positives = 94/234 (40%), Gaps = 26/234 (11%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQG 57 RP GR +++R + + GS L G T+VL ++ EE L + Sbjct: 325 RPDGRKPDEIREIWIQVGLLPRPHGSALFTRGQTQVLTVCTLGTKEEEQFLDSLGIEETK 384 Query: 58 WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCD 117 Y P ST R + L RAL A + + +T+ L + Sbjct: 385 RYMHHYNFPPFSTGEIRRLRG----PSRRDIGHGALAERALLAVLPSEDEFPYTMRLVSE 440 Query: 118 VLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV------NGEA 171 VL ++G T AS+ G+ +AL+DA P++ VA V++G+V Sbjct: 441 VLSSNGSTSMASVCGSSLALMDA-----------GVPIRKPVAGVAMGLVTDQTTGRYTI 489 Query: 172 VCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 + D++ +ED+ + D V T DG I +Q + T E + L AR Sbjct: 490 LTDIQGIEDALGDMDFKVAGTRDG-ITAIQMDIKVMGITPEIMRDALEQARRGR 542 Score = 71.2 bits (173), Expect = 2e-11, Method: Composition-based stats. Identities = 47/221 (21%), Positives = 77/221 (34%), Gaps = 23/221 (10%) Query: 12 RPVTLTRN-YTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRST 70 R +T+ + A+G+VLV +G+T VL T + + +T EY + Sbjct: 15 RLLTIETGRVAEQADGAVLVRYGETVVLTTVVGAKQPVEGIDFFP---LTVEYEEKMYAA 71 Query: 71 HTRNAREAAK-GKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQAD--GGTRT 127 + GK + RL R +R + + VL AD Sbjct: 72 GKIPGGFFRREGKPSEAAILAARLTDRPIRPLFP--KGYRNEVQVISTVLSADQENEPDV 129 Query: 128 ASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDM 187 SI GA AL L P G V AV +G ++GE V + + + D+ Sbjct: 130 LSIIGASAAL-----------TLSDIPWYGPVGAVRIGELDGELVINPTSHQLLESRMDI 178 Query: 188 NVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 V T D + + + + + + A E + Sbjct: 179 VVAGTAD---AILMVEGQANEISEDRFIEAVVRAHQEIKRI 216 >UniRef50_B2UNC2 Ribonuclease PH n=3 Tax=Verrucomicrobia RepID=B2UNC2_AKKM8 Length = 270 Score = 195 bits (496), Expect = 9e-49, Method: Composition-based stats. Identities = 123/229 (53%), Positives = 155/229 (67%), Gaps = 2/229 (0%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFL--KGQGQGWI 59 R R +Q+RP++ +A SVLV FG TKV+C +IEE VPR++ + GW+ Sbjct: 12 RQDKRLVDQLRPISFETGIAPNATASVLVTFGRTKVICAVTIEEDVPRWMKVQRVEGGWL 71 Query: 60 TAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVL 119 TAEY MLP ST R R+ GK GR+ EIQRLI R+LRAAVDL +G+ TI +DCDVL Sbjct: 72 TAEYSMLPYSTLDRKRRDITAGKLDGRSSEIQRLIGRSLRAAVDLGKIGQRTIWVDCDVL 131 Query: 120 QADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVE 179 QADGGTRTASITGA VAL A+ KLV GKL +PMK +V+AVSVGI+ GEA+ DL YVE Sbjct: 132 QADGGTRTASITGASVALAIAVNKLVAEGKLAESPMKRLVSAVSVGILEGEALLDLCYVE 191 Query: 180 DSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 D AE DMN+VMT+ G +EVQG+ E FT +++ +L L R + Sbjct: 192 DKDAEVDMNLVMTDQGEFVEVQGSGEEAVFTADQMNRMLELGRKGLEEI 240 >UniRef50_Q2JKT3 Ribonuclease PH n=22 Tax=Bacteria RepID=RNPH_SYNJB Length = 244 Score = 195 bits (496), Expect = 9e-49, Method: Composition-based stats. Identities = 127/230 (55%), Positives = 158/230 (68%), Gaps = 5/230 (2%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 RP R+ Q+RPV+ R++T++A GSVLV+FG T VLCTAS+ E VP FL+ GQGW+TA Sbjct: 5 RPDNRTAAQLRPVSFERHFTRYAPGSVLVKFGHTHVLCTASVAEEVPPFLQNTGQGWLTA 64 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQA 121 EY MLP +T R R K GRT EIQRLI R+LRAA+D + LG TIT+D DVLQA Sbjct: 65 EYRMLPGATQQRQPR--EMLKLSGRTAEIQRLIGRSLRAALDFRKLGSRTITVDADVLQA 122 Query: 122 DGGTRTASITGACVALVDALQKLVENGKLK---TNPMKGMVAAVSVGIVNGEAVCDLEYV 178 DGGTRTA+ITG VAL DA+ L + G L +P++ VAA+SVGIV GE + DL Y Sbjct: 123 DGGTRTAAITGGYVALHDAITWLYKQGALDPAQGSPLRQQVAALSVGIVQGEVLVDLCYE 182 Query: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 EDS AE DMN+VM E G IE+QGTAE F+ +LL +L +A+ L Sbjct: 183 EDSQAEVDMNIVMNEQGSFIEIQGTAEAACFSRPQLLQMLEMAQAGIQEL 232 >UniRef50_Q1IQ54 Polyribonucleotide nucleotidyltransferase n=96 Tax=Bacteria RepID=PNP_ACIBL Length = 815 Score = 195 bits (495), Expect = 1e-48, Method: Composition-based stats. Identities = 53/232 (22%), Positives = 95/232 (40%), Gaps = 24/232 (10%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQG 57 RP GR+ +Q+R + + + GS + G+T+ L T ++ + +G+ + Sbjct: 318 RPDGRAFDQIRQIWIEVDVLPRTHGSAVFTRGETQALVTTTLGTGDDMQRMEGFEGEAKK 377 Query: 58 WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCD 117 Y P S A G R + L RAL A + + + + + D Sbjct: 378 RFMLHYNFPPFSVGEVAFLRGA----GRREIGHGALAERALSAVLPSEDKWPYAMRVVSD 433 Query: 118 VLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV----NGEAVC 173 +L+++G + ASI G ++L+DA P+K VA +++G+V + + Sbjct: 434 ILESNGSSSMASICGGSLSLMDA-----------GVPLKAPVAGIAMGLVKEGDDYAILT 482 Query: 174 DLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 D+ ED + D V T G I +Q + T + + L AR Sbjct: 483 DIAGAEDHYGDMDFKVAGTTQG-ITALQMDIKIGGITAQIMREALEQARRGR 533 Score = 83.5 bits (205), Expect = 4e-15, Method: Composition-based stats. Identities = 47/220 (21%), Positives = 80/220 (36%), Gaps = 23/220 (10%) Query: 13 PVTLTRNYT-KHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTH 71 ++ K A GS +V G + VL TA + +T +Y + Sbjct: 17 SLSFETGKLAKQAHGSAIVRSGQSVVLATACANADPREGIDFFP---LTVDYREYTYAGG 73 Query: 72 TRNARE-AAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGG--TRTA 128 +G+ + + R I R +R + VL AD Sbjct: 74 RFPGGFIKREGRPSEKEILTSRQIDRPIRPLFPEG--FRCETQVIAMVLSADSENDPDVC 131 Query: 129 SITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMN 188 I GA AL + P G + AV VG++ G+ + + Y E A++ ++ Sbjct: 132 GINGASAALA-----------VSDIPFNGPIGAVRVGLIEGQNIVNPTYDEMRASKLNIM 180 Query: 189 VVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 VV T +G I+ ++ A T EE++ + GE + Sbjct: 181 VVGTAEG-IVMIESGAHEA--TEEEVVSAIEFGHGEIKKI 217 >UniRef50_C1L2N7 Polyribonucleotide nucleotidyltransferase n=48 Tax=Bacteria RepID=PNP_LISMC Length = 723 Score = 194 bits (492), Expect = 2e-48, Method: Composition-based stats. Identities = 56/236 (23%), Positives = 99/236 (41%), Gaps = 24/236 (10%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQ 56 +RP GR N++RP++ GS L G T+ L ++ E + L + Sbjct: 316 IRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLAPLREHQIIDGLGTEEY 375 Query: 57 GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 Y S R G R + L RAL+ + + +TI L Sbjct: 376 KRFMHHYNFPQFSVGETGPRR----APGRREIGHGALGERALQYVIPSEEEFPYTIRLVS 431 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV----NGEAV 172 +VL+++G + ASI G+ +A++DA P+K VA +++G+V + + Sbjct: 432 EVLESNGSSSQASICGSTLAMLDA-----------GVPIKAPVAGIAMGLVKLGDDYTIL 480 Query: 173 CDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 D++ +ED + D V T+DG I +Q + + + + L L A+ + Sbjct: 481 SDIQGMEDHFGDMDFKVAGTKDG-ITALQMDIKIDGLSRQILDEALTQAKEGRLHI 535 Score = 76.6 bits (187), Expect = 5e-13, Method: Composition-based stats. Identities = 44/209 (21%), Positives = 77/209 (36%), Gaps = 24/209 (11%) Query: 14 VTLTRNYT-KHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTHT 72 +++ K A G+ L+ +GDT VL A + +T Y S Sbjct: 16 LSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFP----LTVNYEEKMYSVGK 71 Query: 73 RNARE-AAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDV--LQADGGTRTAS 129 +G+ R RLI R +R + + V + D A+ Sbjct: 72 VPGGFLKREGRPSDRATLTARLIDRPIRPL--FAEGFRNEVQITSTVFSVDQDCSPEMAA 129 Query: 130 ITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNV 189 + G+ VALV + P +G +A V VG ++G+ V + + ++ + V Sbjct: 130 MLGSSVALV-----------ISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTV 178 Query: 190 VMTEDGRIIEVQGTAEGEPFTHEELLILL 218 T D I V+ A+ + E +L + Sbjct: 179 AGTYD-AINMVEAGAKE--VSEEAMLEAI 204 >UniRef50_B1I4W9 Ribonuclease PH n=67 Tax=Bacteria RepID=RNPH_DESAP Length = 261 Score = 194 bits (492), Expect = 3e-48, Method: Composition-based stats. Identities = 137/228 (60%), Positives = 165/228 (72%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +R GR+ Q+RPV +TR+Y K+AEGS L+E GDT+V+CTASI+ VP FLKG G+GW+T Sbjct: 2 IRVDGRAPAQMRPVYITRHYNKYAEGSALIEVGDTRVICTASIDNRVPTFLKGAGKGWVT 61 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 AE+GMLPR+T R RE+ KG GGR++EIQRLI R+LRA VDL ALGE T+ LDCDV+Q Sbjct: 62 AEFGMLPRATGVRGIRESVKGHPGGRSLEIQRLIGRSLRAVVDLPALGERTVILDCDVIQ 121 Query: 121 ADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVED 180 ADGGTRTA+ITG VALVDA+Q LV G P+ VAA SVG+ GEAV DL + ED Sbjct: 122 ADGGTRTAAITGGFVALVDAMQTLVTEGVTPRLPVLDYVAATSVGLFEGEAVLDLCFAED 181 Query: 181 SAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 SAAE D NVVMT GR +EVQGT EG F ++ LL LA L Sbjct: 182 SAAEVDFNVVMTGTGRFVEVQGTGEGTTFERADVDRLLDLAVVGIRSL 229 >UniRef50_A8F725 Polyribonucleotide nucleotidyltransferase n=21 Tax=Bacteria RepID=PNP_THELT Length = 710 Score = 193 bits (491), Expect = 4e-48, Method: Composition-based stats. Identities = 50/232 (21%), Positives = 88/232 (37%), Gaps = 24/232 (10%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQG 57 R R +RP+T GS L G+T+ L ++ +E + L +G Sbjct: 317 RLDMRKPKDIRPITCETGLLPRVHGSALFTRGETQSLGIVTLGAPMDEQIIDSLLEEGTK 376 Query: 58 WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCD 117 Y P ST R + L RAL+ + + +TI + + Sbjct: 377 RFMLHYNFPPFSTGEVKPLRG----PSRREIGHGHLAERALKFVLPDEDRFPYTIRIVSE 432 Query: 118 VLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGE----AVC 173 +L+++G + A++ +AL+DA P+ VA V++G++ + + Sbjct: 433 ILESNGSSSMATVCSGSLALMDA-----------GVPISKHVAGVAMGLILEKDSQIVLT 481 Query: 174 DLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 D+ ED + D V T DG I Q + + + L L A+ Sbjct: 482 DILGAEDHWGDMDFKVAGTRDG-ITAFQMDCKVSGVSADLLERALNQAKEAR 532 Score = 80.5 bits (197), Expect = 5e-14, Method: Composition-based stats. Identities = 50/221 (22%), Positives = 80/221 (36%), Gaps = 23/221 (10%) Query: 12 RPVTLTRN-YTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRST 70 R + K A G+V+ GDT VL TA ++G +T E+ + Sbjct: 11 REFIVEHGKVAKQANGAVVARIGDTTVLATA---VMSDSAVEGIDFVPLTVEFQERFYAA 67 Query: 71 HTRNARE-AAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADG-GTRT- 127 +GK + R I R +R + + V+ D T Sbjct: 68 GKIPGGFIKREGKPSEMAILSARTIDRPIRPLFPKHL--RNEVQVVVTVISTDSVNTPDI 125 Query: 128 ASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDM 187 + A +AL + P G+VAAV VG+V+G+ V + + D+ Sbjct: 126 VGVFAASLAL-----------NISDIPFNGIVAAVRVGLVDGKIVLFPTEDQLQKSLLDI 174 Query: 188 NVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 V TED I V+G A+ + ++L L A + Sbjct: 175 VVAGTED-TITMVEGEAKE--VSESQMLQALLKAHDAIKQI 212 >UniRef50_D0DA55 Ribonuclease PH n=2 Tax=Rhodobacteraceae RepID=D0DA55_9RHOB Length = 296 Score = 192 bits (489), Expect = 6e-48, Method: Composition-based stats. Identities = 130/228 (57%), Positives = 166/228 (72%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 MRP+GR +++R V++ TKHAEGS L++ GDT+V+CTAS+EE VP F+KG G GW+T Sbjct: 60 MRPSGRHLSEMRTVSIETGITKHAEGSCLIKVGDTQVICTASLEERVPPFIKGSGLGWVT 119 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 AEYGMLPRST +R REA GKQGGRT+EIQRLI R+LRA VD ALGE IT+DCDV+Q Sbjct: 120 AEYGMLPRSTGSRMRREATSGKQGGRTVEIQRLIGRSLRAGVDRVALGERQITIDCDVIQ 179 Query: 121 ADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVED 180 ADGGTR ASITG VAL A+ KL++ G +KT+P+ VAAVS GI G+ + DL+Y ED Sbjct: 180 ADGGTRCASITGGWVALRLAVNKLMKAGDVKTDPLVSPVAAVSCGIYAGQPILDLDYPED 239 Query: 181 SAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 S A D N ++ DG++IEVQ +AEG F+ ++ L+ LA L Sbjct: 240 SEAGVDGNFILRGDGQLIEVQMSAEGATFSRAQMSELMDLAEKGVAQL 287 >UniRef50_Q9S7G6 Polynucleotide phosphorylase n=36 Tax=cellular organisms RepID=Q9S7G6_ARATH Length = 991 Score = 192 bits (488), Expect = 7e-48, Method: Composition-based stats. Identities = 59/232 (25%), Positives = 95/232 (40%), Gaps = 9/232 (3%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQ 56 R GR ++VRP+ +Y GS L GDT+VLCT ++ E L G + Sbjct: 363 FRVDGRHVDEVRPIYCESHYLPALHGSALFSRGDTQVLCTVTLGAPAEAQSLDSLVGPPK 422 Query: 57 GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 Y P T+ R G R + L +AL A + + +TI ++ Sbjct: 423 KRFMLHYSFPPYCTNEVGKR----GGLNRREVGHGTLAEKALLAVLPPEEAFPYTIRINS 478 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLE 176 +V+ +DG T AS+ G +AL+DA L + + + V S I + V D+ Sbjct: 479 EVMSSDGSTSMASVCGGSMALMDAGIPLRAHVAGVSVGLITDVDPSSGEIKDYRIVTDIL 538 Query: 177 YVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 +ED + D + T DG + +Q + + + L AR + Sbjct: 539 GLEDHLGDMDFKIAGTRDG-VTAIQLDIKPAGIPLDIVCESLENAREARLQI 589 Score = 62.7 bits (151), Expect = 8e-09, Method: Composition-based stats. Identities = 40/212 (18%), Positives = 72/212 (33%), Gaps = 20/212 (9%) Query: 12 RPVTLTRNYTKH-AEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRST 70 R V+ A GSV++ +TKVL T + + +T +Y + Sbjct: 62 RVVSFETGKIARFANGSVVLGMDETKVLSTVTCAKTDSPRDFLP----LTVDYQEKQYAQ 117 Query: 71 HTR-NAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTAS 129 N +G R + RLI R +R + + VL +DG Sbjct: 118 GLIPNTYMRREGAPKERELLCGRLIDRPIRPLFPTGFY--HEVQIMASVLSSDGKQDPD- 174 Query: 130 ITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNV 189 + A L P G + + +G + G+ V + E S+++ ++ Sbjct: 175 --------ILAANASSAALMLSDVPWGGPIGVIRIGRICGQFVVNPTMDELSSSDLNLIY 226 Query: 190 VMTEDGRIIEVQGTAEGEPFTHEELLILLALA 221 T D + + + ++L L LA Sbjct: 227 ACTRDKT---MMIDVQSREISEKDLAAALRLA 255 >UniRef50_Q9SP08 Exonuclease RRP41 n=15 Tax=Magnoliophyta RepID=Q9SP08_ARATH Length = 241 Score = 192 bits (488), Expect = 8e-48, Method: Composition-based stats. Identities = 62/231 (26%), Positives = 100/231 (43%), Gaps = 22/231 (9%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPR--FLKGQGQGW 58 +R GR N++R + A+GS + E G+TKV+ + K Sbjct: 9 LRLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAVYGPREIQNKSQQKKNDHAV 68 Query: 59 ITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDV 118 + EY M ST R ++ R+ E+ +I + + A + + + I + V Sbjct: 69 VLCEYSMAQFSTGDRRRQKF-----DRRSTELSLVIRQTMEACILTELMPHSQIDIFLQV 123 Query: 119 LQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYV 178 LQADGGTR+A I A +AL DA PM+ + + S G +N + DL YV Sbjct: 124 LQADGGTRSACINAATLALADA-----------GIPMRDLAVSCSAGYLNSTPLLDLNYV 172 Query: 179 EDSAAETDMNV-VMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 EDSA D+ V ++ + ++ +Q A+ E + ALA + Sbjct: 173 EDSAGGADVTVGILPKLDKVSLLQMDAK---LPMETFETVFALASEGCKAI 220 >UniRef50_C9RL26 Polyribonucleotide nucleotidyltransferase n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RL26_FIBSS Length = 744 Score = 191 bits (486), Expect = 1e-47, Method: Composition-based stats. Identities = 56/242 (23%), Positives = 100/242 (41%), Gaps = 31/242 (12%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTK--VLCT--ASIEEGVPRFLKGQGQ 56 +R GR+ +VRP+ + A GS + + G+T+ V+CT +E L+G+G Sbjct: 338 VRLDGRTTTEVRPIEIEMGVLPRAHGSAIFQRGETQGLVICTLGTKADEQRFESLQGEGA 397 Query: 57 GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 Y P S R + L R+L A + L +TI + Sbjct: 398 KSYMLHYNFPPFSVGECKKLGL-----SRREIGHGHLAERSLAAVLPLPEDFPYTIRVVS 452 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNG------- 169 ++++++G + AS+ G C++L+DA P+K VA +++G+++ Sbjct: 453 EIMESNGSSSMASVCGGCLSLMDA-----------GVPIKAPVAGIAMGLISEKGSVKEG 501 Query: 170 ---EAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESN 226 + + D+ ED + D V T +G I Q + T E + L AR Sbjct: 502 GKIKILSDITGTEDHLGDMDFKVTGTAEG-ITAFQMDIKIRGITPELMREALEQARQGRI 560 Query: 227 PL 228 + Sbjct: 561 HI 562 Score = 59.3 bits (142), Expect = 1e-07, Method: Composition-based stats. Identities = 46/229 (20%), Positives = 78/229 (34%), Gaps = 28/229 (12%) Query: 3 PAGRSNNQVRPVTLTRNYT-KHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 P GR +T K A GS + + GD VL T E +T Sbjct: 24 PDGRV------ITFETGRIAKQARGSAVAKMGDAFVLSTVCYGEEKDGDFFP-----LTV 72 Query: 62 EYGMLPRSTHTRNAR--EAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVL 119 EY + + G+ + R+I R +R + + VL Sbjct: 73 EYREKSYAAGRLPGGYSKREPGRPSDEEILSARIIDRPIRPMFP--ENFTREVQVIVQVL 130 Query: 120 QADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVE 179 +D + G A + L P + VAAV V +V+G+ + Y + Sbjct: 131 SSD-KKFAPDVLGVSAA--------SLSIGLSELPFEQQVAAVRVAVVDGQNIVMPTYDQ 181 Query: 180 DSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 + A+ D+ V TED + V+G A + + ++ + + Sbjct: 182 VAVADLDLVVAGTED-SVCMVEGGAYE--VSEDTMIGAILAGHEVIKQM 227 >UniRef50_C0R0E0 Polyribonucleotide nucleotidyltransferase n=2 Tax=Brachyspira RepID=PNP_BRAHW Length = 712 Score = 191 bits (485), Expect = 2e-47, Method: Composition-based stats. Identities = 51/233 (21%), Positives = 93/233 (39%), Gaps = 24/233 (10%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQ 56 MRP GR+ +++RP+T N GS L G T+ L ++ + + + G+ Sbjct: 312 MRPDGRALDEIRPITTMTNLIPRVHGSALFTRGQTQCLSIVTLGSEKDAQLMDDIYGKEN 371 Query: 57 GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 Y P S G G R + L R+ A + K +TI + Sbjct: 372 KTFMLHYNFPPFSVGEV----GRYGAPGRREIGHGNLAERSFNAVLPPKDKFPYTIRVVA 427 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV----NGEAV 172 ++L+++G + A+I + ++L+ A P+ VA +++G+ + + Sbjct: 428 EILESNGSSSMATICASTMSLLSA-----------GVPLNASVAGIAMGLATYKDGYKIL 476 Query: 173 CDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 D++ VED + D V T G I Q + + + L L A+ Sbjct: 477 TDIQGVEDHLGDMDFKVAGTRKG-ITAFQLDIKLTGISAQILKEALEQAKKAR 528 Score = 69.7 bits (169), Expect = 8e-11, Method: Composition-based stats. Identities = 47/213 (22%), Positives = 76/213 (35%), Gaps = 19/213 (8%) Query: 13 PVTLTRNYT-KHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTH 71 + L K A GSV + G+T +L T + +T Y + Sbjct: 12 ELILETGLLAKQAHGSVTLRLGNTTILATVVAAKEPNLESDFFP---LTVNYNEKYYAGG 68 Query: 72 TRNAR-EAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTASI 130 + K + + I R+I R LR + + VL D T Sbjct: 69 KIPGGFFKREAKPRDKEILISRIIDRPLRPLFPEG--FRNEVQIIPTVLSVDTDMPTD-- 124 Query: 131 TGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNVV 190 AL + P G VAAV +G NGE + + + E S +E D+ V Sbjct: 125 -------ALALIASSAALTISWIPFGGPVAAVRIGYKNGEYIINPKNSELSTSELDIIVA 177 Query: 191 MTEDGRIIEVQGTAEGEPFTHEELLILLALARG 223 ++D I+ ++G A+ + E + + LA Sbjct: 178 GSKD-AILMIEGEAKE--VSEEVFIGAIELAHK 207 >UniRef50_A1KID0 Ribonuclease PH n=18 Tax=Bacteria RepID=RNPH_MYCBP Length = 259 Score = 191 bits (484), Expect = 2e-47, Method: Composition-based stats. Identities = 129/228 (56%), Positives = 162/228 (71%), Gaps = 1/228 (0%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR ++++RPV +TR +T++ GSVL+EFG TKVLCTAS+ EGVPR+ K G GW+TA Sbjct: 4 REDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGWLTA 63 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQA 121 EY MLP +TH+R+ RE+ +G+ GRT EI RLI R+LRA +DL ALGE TI +DCDVLQA Sbjct: 64 EYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQA 123 Query: 122 DGGTRTASITGACVALVDALQKLVENGK-LKTNPMKGMVAAVSVGIVNGEAVCDLEYVED 180 DGGTRTA+ITGA VAL DA+ L GK P+ +AAVSVG+V+G DL Y ED Sbjct: 124 DGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEED 183 Query: 181 SAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 S AE DMNVV T+ G ++E+QGT EG F L LL +A G + L Sbjct: 184 SRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTL 231 >UniRef50_A9A5C9 Probable exosome complex exonuclease 1 n=3 Tax=Archaea RepID=ECX1_NITMS Length = 244 Score = 191 bits (484), Expect = 2e-47, Method: Composition-based stats. Identities = 68/227 (29%), Positives = 100/227 (44%), Gaps = 21/227 (9%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGV-PRFLKGQGQGWIT 60 R GR+ ++ R + + K+A+GS +EFGD K+L V P+ + G + Sbjct: 17 RCDGRTVDEPRRIMIKAGGLKNADGSSYIEFGDNKILVGVFGPRDVHPKHMSDTDTGILR 76 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 Y M P S R R +EI ++I AL AV L+ + + +VLQ Sbjct: 77 VRYHMEPFSVGERKNP-----APSRREIEISKVIKEALEPAVMLEKFPRTAVDVFIEVLQ 131 Query: 121 ADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVED 180 ADGGTR A++T A VAL DA PM+ MVAA++ G V + D+ ED Sbjct: 132 ADGGTRCAALTAASVALADA-----------GIPMRDMVAAIAAGKVADTVILDVNNEED 180 Query: 181 SAAETDMNVV-MTEDGRIIEVQGTAEGEPFTHEELLILLALARGESN 226 A + DM + M +I +Q T EE + + Sbjct: 181 QAGQADMPIGYMPNLEKITLLQLDGV---LTPEEYKKCIQVGVDGCK 224 >UniRef50_D1INE0 Whole genome shotgun sequence of line PN40024, scaffold_66.assembly12x (Fragment) n=4 Tax=Magnoliophyta RepID=D1INE0_VITVI Length = 905 Score = 190 bits (483), Expect = 3e-47, Method: Composition-based stats. Identities = 53/232 (22%), Positives = 90/232 (38%), Gaps = 9/232 (3%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTAS----IEEGVPRFLKGQGQ 56 +R GR N+VRP+ GS L GDT+VLCT + + L G Sbjct: 317 LRVDGRHLNEVRPLYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPGDAQRLDSLVGPPT 376 Query: 57 GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 Y P S + R R + L +AL A + + +T+ ++ Sbjct: 377 KRFMLHYSFPPFSINEVGKRVG----LNRREVGHGTLAEKALLAVLPPEEEFPYTVRINS 432 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLE 176 +V+ +DG T A++ G +AL+DA L E+ + + V + I + + D+ Sbjct: 433 EVMASDGSTSMATVCGGSMALMDAGIPLREHVAGISVGLVTEVDPSTNTIKDYRILTDIL 492 Query: 177 YVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 +ED + D + T G I +Q + + + L A + Sbjct: 493 GLEDHLGDMDFKIAGTRKG-ITAIQLDIKPAGIPLDIICECLEPALRGRLQI 543 Score = 71.6 bits (174), Expect = 2e-11, Method: Composition-based stats. Identities = 40/215 (18%), Positives = 74/215 (34%), Gaps = 26/215 (12%) Query: 12 RPVTLTRNYTKH-AEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRST 70 R +T A G+V++ +TKVL T + +G +T +Y + Sbjct: 16 RSITFETGKIARFANGAVVMSMDETKVLSTVASSKGDAARDFLP----LTVDYQEKHFAQ 71 Query: 71 HTRNARE-AAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGG---TR 126 +G R + RLI R +R + + VL +DG Sbjct: 72 GVIPTTFMRREGAPRERELLCGRLIDRPIRPLFPAGFY--HEVQVMASVLSSDGKQDPDV 129 Query: 127 TASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETD 186 A+ AL+ L P G + + +G + G+ + + E S ++ + Sbjct: 130 MAA-NATSAALM-----------LSDIPWGGPIGVIRIGRICGQFIVNPSMDELSLSDLN 177 Query: 187 MNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALA 221 + T D + + + ++L L LA Sbjct: 178 LVYACTRDKT---LMIDVQAREISEKDLEAALRLA 209 >UniRef50_D2L1T8 Polyribonucleotide nucleotidyltransferase n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L1T8_9DELT Length = 762 Score = 189 bits (481), Expect = 4e-47, Method: Composition-based stats. Identities = 52/236 (22%), Positives = 88/236 (37%), Gaps = 24/236 (10%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTAS----IEEGVPRFLKGQGQ 56 +R GR VRP+ + GS L G+TK LC A+ +E L G+ Sbjct: 320 IRLDGRDTKSVRPIGIQVGVLPRTHGSTLFARGETKALCVATLGSTGDEQKIETLNGETY 379 Query: 57 GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 Y P R + L R++ + FT+ + Sbjct: 380 KRFMLHYNFPPYCVGEVKMLRG----PSRRDIGHGALAERSVLPVLPGPEEFPFTMRVVS 435 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGE----AV 172 V++++G + AS+ GA +AL+DA P+K VA +++G++ + Sbjct: 436 QVMESNGSSSMASVCGASLALMDA-----------GVPIKQPVAGIAMGLIKEGDDFLIL 484 Query: 173 CDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 D+ ED+ + D V T DG I +Q + + L A+ + Sbjct: 485 TDILGDEDAMGDMDFKVAGTADG-ITGIQMDIKITGIPQAVMRQALNQAKEARLHI 539 Score = 70.1 bits (170), Expect = 6e-11, Method: Composition-based stats. Identities = 42/222 (18%), Positives = 69/222 (31%), Gaps = 28/222 (12%) Query: 14 VTLTRNYT-KHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTHT 72 + L A+G+V ++ G T VL TA + +G+ S Sbjct: 19 IILETGRLANQADGAVWIQSGGTVVLVTAC------TQALAEEKGFFPLVVDYQEMSYAA 72 Query: 73 RNAR----EAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRT- 127 G+ R + + RLI R R + + VL ADG Sbjct: 73 GRIPGSYFRREIGRPSEREVLVCRLIDRPCRPLFP--KGFRDEVQIIATVLSADGQVEPD 130 Query: 128 -ASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETD 186 ++T A AL + P G +A VG ++G+ V + A Sbjct: 131 VLALTAASTALH-----------ISKIPFHGPIAGGRVGYIDGQFVLNPTVP-MINAGAV 178 Query: 187 MNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 +N+ + + G + + L L PL Sbjct: 179 LNLTFAASRDAVVMV-EGGGRFVSEDLLADALEWGHKAVQPL 219 >UniRef50_A1UU54 Polyribonucleotide nucleotidyltransferase n=155 Tax=cellular organisms RepID=PNP_BARBK Length = 733 Score = 189 bits (480), Expect = 6e-47, Method: Composition-based stats. Identities = 52/235 (22%), Positives = 94/235 (40%), Gaps = 24/235 (10%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQG 57 R GR + VRP+ GS L G+T+ L A++ +E L G + Sbjct: 317 RIDGRDLSTVRPIQSEVGILPRTHGSALFTRGETQALVVATLGTSEDEQYVDLLTGVCKE 376 Query: 58 WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCD 117 Y P S G R + +L RA+ + K +TI + + Sbjct: 377 TFLLHYNFPPFSVGE----TGRLSSPGRREIGHGKLAWRAIHPMLPTKEAFPYTIRVVSE 432 Query: 118 VLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNG----EAVC 173 + +++G + A++ G +AL+DA P+ VA +++G++ + Sbjct: 433 ITESNGSSSMATVCGTSLALMDA-----------GVPLARPVAGIAMGLIKEGERFVILS 481 Query: 174 DLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 D+ ED + D V T++G I +Q + + T + + I L A+ N + Sbjct: 482 DILGDEDHLGDMDFKVAGTKNG-ITSLQMDIKIDGITEDIMKIALEQAKDGRNHI 535 Score = 84.7 bits (208), Expect = 2e-15, Method: Composition-based stats. Identities = 45/218 (20%), Positives = 75/218 (34%), Gaps = 25/218 (11%) Query: 12 RPVTLTRN-YTKHAEGSVLVEFGDTKVLCTA-SIEEGVPRFLKGQGQGWITAEYGMLPRS 69 RP+T+ + A+G+V+ +G+T VL T S + P +T Y + Sbjct: 14 RPLTIETGRVARQADGAVVATYGETVVLATVVSAKAPKPDQDFFP----LTVNYQEKTYA 69 Query: 70 THTRNARE-AAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQAD--GGTR 126 + + I RLI R +R + + V+Q D Sbjct: 70 VGKIPGGYFKRESRPSENETLISRLIDRPIRPLFVDDYKNDTQ--VIVSVIQHDLENNPD 127 Query: 127 TASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETD 186 S+ A AL L P G +A VG NG V + E ++ D Sbjct: 128 ILSMIAASAAL-----------TLSGIPFMGPIAGARVGYCNGHYVLNPTLDEMPESKLD 176 Query: 187 MNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGE 224 + V TE+ + +E + E +L + + Sbjct: 177 LVVAGTEN---AVLMVESEAHELSEEVMLGAITFGQKG 211 >UniRef50_B3EH06 Polyribonucleotide nucleotidyltransferase n=1 Tax=Chlorobium limicola DSM 245 RepID=PNP_CHLL2 Length = 736 Score = 189 bits (479), Expect = 8e-47, Method: Composition-based stats. Identities = 52/235 (22%), Positives = 92/235 (39%), Gaps = 24/235 (10%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQG 57 R GR+ +VRP+++ A GS L G+T+ L T ++ + L Sbjct: 335 RLDGRTLEEVRPISIELGIIPRAHGSALFTRGETQALVTITLGTKKDAQSVDNLTNNADK 394 Query: 58 WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCD 117 Y P S G G R + L RA++ + +T+ + D Sbjct: 395 KFMLHYNFPPFSVGE----TGRIGSTGRREIGHGNLAERAIKMVAPPEQEFPYTVRIVSD 450 Query: 118 VLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV----NGEAVC 173 +L+++G + AS+ G +AL+D P++ V+ +++G++ N + Sbjct: 451 ILESNGSSSMASVCGGTLALMD-----------GGVPIRKPVSGIAMGLIKEGSNYAVLS 499 Query: 174 DLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 D+ ED + D V T DG I Q + + + L L AR + Sbjct: 500 DILGNEDHLGDMDFKVSGTRDG-ITACQMDIKIDGLDYHILESALEQARRGRLHI 553 Score = 83.1 bits (204), Expect = 7e-15, Method: Composition-based stats. Identities = 46/217 (21%), Positives = 79/217 (36%), Gaps = 18/217 (8%) Query: 14 VTLTRNYT-KHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTHT 72 +++ K A+GSV+V GDT VL T + P Q + EY + Sbjct: 18 ISIETGKMAKQADGSVVVRLGDTMVLATVVSSKKTP--PPNQDYFPLQVEYREKYSAAGK 75 Query: 73 RNAR-EAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTASIT 131 + + + + RLI RALR L E I V+ +D A + Sbjct: 76 FPGGFFKRESRPSEKEILSARLIDRALRPLFPDGYLFETQI--IVTVISSD-QINDADVL 132 Query: 132 GACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNVVM 191 G A + P ++ V VG +NG+ + + + E ++ D+ + Sbjct: 133 GGLAA--------SAAIMVSDIPFHNAMSEVRVGRINGKFIINPDVNELVNSDLDICIGG 184 Query: 192 TEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 T D I ++ E + + E+L + L Sbjct: 185 TTD-TICMLE--GEMKEISEAEMLDAIKFGHDAIRRL 218 >UniRef50_B3EMN6 Polyribonucleotide nucleotidyltransferase n=12 Tax=Bacteria RepID=PNP_CHLPB Length = 734 Score = 188 bits (478), Expect = 1e-46, Method: Composition-based stats. Identities = 51/235 (21%), Positives = 93/235 (39%), Gaps = 24/235 (10%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQG 57 R GR +VRP+++ A GS L G+T+ L ++ + + L + Sbjct: 332 RLDGRKLEEVRPISIELGLIPRAHGSALFTRGETQALVVLTLGTKKDAQMIDTLLDDTEK 391 Query: 58 WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCD 117 Y P S G G R + L RA++ V ++ +TI L + Sbjct: 392 RFMLHYNFPPFSVGE----TGRVGGVGRREIGHGNLAERAVKKVVPSESEFPYTIRLVSE 447 Query: 118 VLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV----NGEAVC 173 +L+++G + AS+ GA +A +D P+ V+ +++G++ N + Sbjct: 448 ILESNGSSSMASVCGATLAAMD-----------GGVPLTKPVSGIAMGLIKEDDNYAVLS 496 Query: 174 DLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 D+ ED + D V T DG I Q + + + L L ++ + Sbjct: 497 DILGNEDHLGDMDFKVAGTRDG-ITACQMDIKIDGLDYHILEKALEQSKNGRLHI 550 Score = 82.0 bits (201), Expect = 2e-14, Method: Composition-based stats. Identities = 43/219 (19%), Positives = 77/219 (35%), Gaps = 22/219 (10%) Query: 14 VTLTRNYT-KHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWI--TAEYGMLPRST 70 +T+ K A+G+ +V GDT V+ T P Q + EY + Sbjct: 15 ITIETGKMAKQADGATIVRMGDTMVIATVVSSRTPP----SPNQDFFPMQVEYREKYYAA 70 Query: 71 HTRNARE-AAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTAS 129 + + + + RLI RALR + I + V+ +D A Sbjct: 71 GKFPGGFIKRESRPSEKEILSARLIDRALRPLFPNGYYQDTQIIIS--VISSD-QLNDAD 127 Query: 130 ITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNV 189 + G A + P ++ V VG +NGE V + E + ++ D+++ Sbjct: 128 VLGGIAA--------SAAIMVSDIPFANSMSEVRVGRINGEFVINPTINELAQSDIDISI 179 Query: 190 VMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 T D I ++ E + E+L + + Sbjct: 180 GGTND-TICMLE--GEMNEISEAEMLEAIRFGHEAIKKI 215 >UniRef50_B5Y8I4 Polyribonucleotide nucleotidyltransferase n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=PNP_COPPD Length = 697 Score = 188 bits (477), Expect = 1e-46, Method: Composition-based stats. Identities = 50/235 (21%), Positives = 95/235 (40%), Gaps = 24/235 (10%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQG 57 R GR+ +++RP+ + GS L G T+VL T ++ + + + Sbjct: 316 RVDGRAFDEIRPLYAESSVLPKVHGSGLFIRGQTQVLSTVTLGSFSDVQFIDAIGLEEFK 375 Query: 58 WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCD 117 +Y P ST R R + L+ RAL + + + +TI + + Sbjct: 376 RFMHQYDFPPFSTGEVKPRRG----PSRREIGHGALVERALSYLIPSEEVFPYTIRVVSE 431 Query: 118 VLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV----NGEAVC 173 VL+++G T AS + +AL+ A PM V +++G++ + Sbjct: 432 VLESNGSTSMASTCASSIALMSA-----------GVPMARHVGGIAMGLIEYNDENVVLT 480 Query: 174 DLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 D++ +ED + D V T +G I +Q + + + E L + A + + Sbjct: 481 DIQGLEDHLGDMDFKVAGTREG-ITALQLDVKVKGISVETLDKAIDQAEVARSKI 534 Score = 68.9 bits (167), Expect = 1e-10, Method: Composition-based stats. Identities = 45/220 (20%), Positives = 78/220 (35%), Gaps = 23/220 (10%) Query: 13 PVTLTRNYTK-HAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTH 71 V + A G+VL FGDT L T + + +T +Y + Sbjct: 17 KVIFQSGFLALQANGAVLARFGDTVALSTVLMSSEPKLDIDFFP---LTVDYEEKSYAVG 73 Query: 72 TRNAREAAK-GKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQAD-GGTRT-A 128 K G+ + RLI R++R + + +L AD Sbjct: 74 KIPGGFFKKEGRPTDMEILKARLIDRSIRPMFPDGM--RNEVQVLNMILAADMENPPDIV 131 Query: 129 SITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMN 188 ++ G AL + P+ ++A V VG ++GE V + + E S ++ D+ Sbjct: 132 ALNGTAAALA-----------VSDIPIPELIAGVRVGYIDGEYVLNPTFAEMSESQLDLV 180 Query: 189 VVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 V T D I+ ++ A L+ L A+ + Sbjct: 181 VAGTRD-SIVMIEAGAAE--VDKSILIGGLKFAQEGIRQI 217 >UniRef50_C7N5E6 Polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) n=2 Tax=Coriobacteriaceae RepID=C7N5E6_SLAHD Length = 743 Score = 188 bits (477), Expect = 1e-46, Method: Composition-based stats. Identities = 50/235 (21%), Positives = 95/235 (40%), Gaps = 24/235 (10%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQG 57 R GR+ +++RP+ + Y GS L + G T+ L ++ E + Sbjct: 315 RADGRAADEIRPLYIRPGYLPRVHGSGLFQRGQTQALSVCTLGLLNEAQRLDTIDPATGK 374 Query: 58 WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCD 117 +Y P T G R + L RA+ + + + I + + Sbjct: 375 RYMHQYNFPPYCTGEV----GRMGAPKRREVGHGALAERAILPVLPSEDEFPYAIRVVSE 430 Query: 118 VLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGE----AVC 173 +L+++G + AS G+C+AL+DA P+K V+ +++G++ E + Sbjct: 431 ILESNGSSSMASTCGSCLALMDA-----------GVPIKAPVSGIAMGLIKEEDGVVILS 479 Query: 174 DLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 D++ +ED + D V T +G I +Q + + E L L A+ + Sbjct: 480 DIQGLEDFLGDMDFKVTGTANG-ITALQMDNKARGLSTEILGRALQQAKEGRAHI 533 Score = 54.6 bits (130), Expect = 2e-06, Method: Composition-based stats. Identities = 41/215 (19%), Positives = 72/215 (33%), Gaps = 26/215 (12%) Query: 16 LTRNYT-KHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTHTRN 74 K A G+VLV+ G+T VL TA I + +T ++ + Sbjct: 17 FETGELAKQATGAVLVKQGETTVLVTAVISAQEKDYDFFP----LTVDFMEKMYAVGRIP 72 Query: 75 ARE-AAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTASIT-- 131 +GK + R+I R +R + + + DG I Sbjct: 73 GGYLKREGKASDKGTLTARMIDRPIRPG--FADGFKQEVHVVATTFAIDGQNPPDCICVG 130 Query: 132 GACVALVDALQKLVENGKLKTNPMKGMVAAVSVGI--VNGEAVCDLEYVEDSAAETDMNV 189 GA AL+ + + P G A V + E + + Y E ++ ++ + Sbjct: 131 GASAALM-----------IGSAPFDGPAACVRIARNAETKEFIVNPTYEEQETSDLELTI 179 Query: 190 VMTEDGRIIEVQGTAEGEPFTHEELLILLALARGE 224 T D I + E T E++L + + Sbjct: 180 AGTRD--YISMVEAGANE-VTEEDMLAAMNFGQEA 211 >UniRef50_Q0AYI2 Polyribonucleotide nucleotidyltransferase n=70 Tax=Bacteria RepID=PNP_SYNWW Length = 703 Score = 188 bits (477), Expect = 2e-46, Method: Composition-based stats. Identities = 52/232 (22%), Positives = 94/232 (40%), Gaps = 24/232 (10%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQG 57 R GR +++R V+ + GS L G T+VL ++ EE L + + Sbjct: 313 RVDGRKLDEIRKVSCEVGFLPRPHGSGLFTRGQTQVLSVTTLGAISEEQRLDGLGIEEKK 372 Query: 58 WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCD 117 Y P ST G R + L RAL A + + +TI + + Sbjct: 373 RYIHHYNFPPYSTGETKPMRG----PGRREIGHGALAERALLAVIPSEEEFPYTIRVVSE 428 Query: 118 VLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNG----EAVC 173 VL+++G + S+ G+ ++L+ A P+K V+ +++G+V + Sbjct: 429 VLESNGSSSMGSVCGSTLSLMHA-----------GVPIKAPVSGIAMGLVKEGERFAIMS 477 Query: 174 DLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 D++ +ED+ + D + TE G + +Q + E + L AR Sbjct: 478 DIQGIEDALGDMDFKLAGTEKG-VTALQMDIKITGVNREIVEAALKQAREGR 528 Score = 80.5 bits (197), Expect = 4e-14, Method: Composition-based stats. Identities = 47/221 (21%), Positives = 83/221 (37%), Gaps = 23/221 (10%) Query: 12 RPVTLTRN-YTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRST 70 RP+ + + A G+ L+ +GDT VL TA+ + + +T +Y + Sbjct: 13 RPLIVEIGQVAQQANGAALMRYGDTVVLVTATAAKQPREGIDFFP---LTVDYEEKQYAV 69 Query: 71 HTRNARE-AAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVL--QADGGTRT 127 +G+ + RLI R +R I + +L + D Sbjct: 70 GKIPGGFIKREGRATAQATLSARLIDRPIRPLFP--KGFRNEIHVVATILSVEKDNAPDV 127 Query: 128 ASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDM 187 +ITGA VAL + P G VAAV VG+V+GE + + + ++D+ Sbjct: 128 TAITGASVAL-----------SISDIPFAGPVAAVIVGLVDGELIINPTV--EQHQKSDL 174 Query: 188 NVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 ++ + I + E E + + A E + Sbjct: 175 HLAVAGTKEAIMMVEGGANE-VPEETMRDAIFFAHEEIKKI 214 >UniRef50_A0LYC0 Polyribonucleotide nucleotidyltransferase n=86 Tax=cellular organisms RepID=PNP_GRAFK Length = 750 Score = 187 bits (476), Expect = 2e-46, Method: Composition-based stats. Identities = 49/238 (20%), Positives = 94/238 (39%), Gaps = 28/238 (11%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQ 56 +R GR ++VR + +Y GS + G+T+ L T ++ + +G+ Sbjct: 317 IRLDGRKTDEVRDIWCEVDYLPSVHGSSIFTRGETQALATVTLGTSRDANQIDMPSHEGE 376 Query: 57 GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 Y P T R + L RAL+ + + +T+ + Sbjct: 377 ERFYLHYNFPPFCTGEARPIRGT----SRREVGHGNLAQRALKGMIPEE--CPYTVRVVS 430 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNG------E 170 +VL+++G + A++ +AL+DA MK V+ +++G+++ Sbjct: 431 EVLESNGSSSMATVCAGTMALMDA-----------GVQMKKPVSGIAMGLISDGDSGKYA 479 Query: 171 AVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 + D+ ED + D V T DG I Q + + ++E L+ L AR + Sbjct: 480 VLSDILGDEDHLGDMDFKVTGTADG-ITACQMDIKVKGLSYEILVNALKQARDGRLHI 536 Score = 60.4 bits (145), Expect = 4e-08, Method: Composition-based stats. Identities = 35/218 (16%), Positives = 72/218 (33%), Gaps = 22/218 (10%) Query: 12 RPVTLTRNYT-KHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRST 70 R +++ K A GSV+V+ G +LCT +T +Y + Sbjct: 16 REISIETGKLAKQAHGSVVVQSGKCMLLCTVVSNYEQKDLPFLP----LTVDYR-EKFAA 70 Query: 71 HTRNARE--AAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTA 128 R + + + RL+ R LR E + + ++ D Sbjct: 71 AGRYPGGFFKREARPSDGEVLTMRLVDRVLRPLFPKDYSAETQVMI--QLMSHDDEVMPE 128 Query: 129 SITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMN 188 A +L P + ++ VG VNGE + + + + ++ +M Sbjct: 129 ---------AMAGLAASAAIQLSDFPFECAISEARVGRVNGEFIINPTRAQLAESDIEMM 179 Query: 189 VVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESN 226 + + D + E + + E+++ + A Sbjct: 180 IGASADS---VMMVEGEMDEISEEDMVEAIKFAHEAIK 214 >UniRef50_Q0SM46 Polyribonucleotide nucleotidyltransferase n=24 Tax=Spirochaetaceae RepID=PNP_BORAP Length = 722 Score = 187 bits (476), Expect = 2e-46, Method: Composition-based stats. Identities = 50/236 (21%), Positives = 94/236 (39%), Gaps = 25/236 (10%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQ 56 +R GR+ N++R + + GS L G+T+ L ++ +E + + G + Sbjct: 315 IRTDGRTPNEIRDILAEVDILSRTHGSSLFTRGETQALAVTTLGTSIDEQIMDDIDGDKR 374 Query: 57 GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 Y P S G R + L RAL + + K +TI + Sbjct: 375 LNFMLHYNFPPFSVGETGRL-----MTGRREIGHGHLAQRALESMIPGKNDFPYTIRVVS 429 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV----NGEAV 172 ++L+++G + A++ ++L+ A P+K VA +++G++ + Sbjct: 430 EILESNGSSSMATVCAGSMSLMSA-----------GVPVKRQVAGIAMGLISEGDKYVVL 478 Query: 173 CDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 D+ ED + D V TE+G I Q + E T + + L AR + Sbjct: 479 SDILGEEDHLGDMDFKVAGTENG-ITGFQMDIKIENVTKQLMRDALEQARVGRIHI 533 Score = 72.4 bits (176), Expect = 1e-11, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 80/228 (35%), Gaps = 28/228 (12%) Query: 5 GRSNNQVRPVTLTRNYT-KHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEY 63 GR + + K A GSVL +G + VL T V L ++ EY Sbjct: 10 GRD-----ELVFETGFMAKQANGSVLATYGGSSVLATVCCSNNVREDLDFVP---LSVEY 61 Query: 64 GMLPRSTHTRNARE-AAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQAD 122 + +GK + + + RLI R +R D I + L D Sbjct: 62 NEKYYAAGKIPGGFIKREGKPKDKEILVSRLIDRPMRPLFD--KRFGREIQVIPTTLATD 119 Query: 123 G-GTRT-ASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVED 180 + A A+ L P G +AAV + +NG+ + + + E Sbjct: 120 QLNPPDIVGMNAAFTAVF-----------LSDIPFNGPIAAVRMVYLNGKFIVNPSFEEI 168 Query: 181 SAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 ++ D+ V + +G I V+G A + + LL + A + Sbjct: 169 HDSDLDIVVAGSLNG-ITMVEGGANE--VSEDILLSAIDSAHEYIKQI 213 >UniRef50_C1A3Y1 Polyribonucleotide nucleotidyltransferase n=2 Tax=Bacteria RepID=PNP_GEMAT Length = 732 Score = 187 bits (475), Expect = 2e-46, Method: Composition-based stats. Identities = 56/238 (23%), Positives = 97/238 (40%), Gaps = 26/238 (10%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQ 56 +R GR ++VR +++ + A GS L G T+ L A++ + +K G+ Sbjct: 309 LRVDGRKKDEVRAISIDTSVLPRAHGSALFTRGQTQALVAATLGTAKDAQRLDSIKEPGE 368 Query: 57 GW--ITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITL 114 Y P ST R + L RAL+ + A +TI + Sbjct: 369 VTRSFMLHYNFPPFSTGEVRPMRGT----SRREIGHGNLAERALQGVLPDFADFPYTIRI 424 Query: 115 DCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVN----GE 170 DVL+++G + AS+ G ++L DA P+K VA V++G++ Sbjct: 425 VSDVLESNGSSSMASVCGGSLSLFDA-----------GVPLKAAVAGVAMGLIKEGERYA 473 Query: 171 AVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 + D+ ED + D V T+DG I +Q + E + + L+ A+ + Sbjct: 474 ILTDILGTEDHLGDMDFKVAGTKDG-ITSIQMDIKIEGLDIKIMEEALSQAKAGRLHI 530 Score = 86.6 bits (213), Expect = 6e-16, Method: Composition-based stats. Identities = 44/219 (20%), Positives = 80/219 (36%), Gaps = 20/219 (9%) Query: 12 RPVTLTRNYT-KHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRST 70 RP+ + K A GS +V+FG+T VL ++ E +T EY + Sbjct: 11 RPLVIETGRMAKQAAGSAVVQFGETMVLAAVTVSENQSPLPFFP----LTVEYKEKTYAA 66 Query: 71 HTRNARE-AAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTAS 129 +G+ + R+I R++R + + + V+ AD A Sbjct: 67 GKIPGGFIKREGRPHDHEILAARIIDRSIRPLFPEG--FKNEVQVFIYVISAD-QENDAD 123 Query: 130 ITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNV 189 + A P G +A V VG V G V + + + ++ ++ V Sbjct: 124 VLALVAA--------SFALNASKIPFLGPIAGVRVGRVQGHWVLNPTFQQLGFSDLELVV 175 Query: 190 VMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 ++D I+ V+ + E++L L L+ L Sbjct: 176 AGSKD-SIVMVE--GGSLEVSEEDVLESLRLSHDGIREL 211 >UniRef50_A9B8G1 Polyribonucleotide nucleotidyltransferase n=38 Tax=Bacteria RepID=PNP_HERA2 Length = 777 Score = 187 bits (475), Expect = 2e-46, Method: Composition-based stats. Identities = 57/235 (24%), Positives = 95/235 (40%), Gaps = 26/235 (11%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTAS----IEEGVPRFLKGQGQ 56 +R GR N++RP+ + GS L G T+VL A+ +E L + Sbjct: 320 IRVDGRKVNEIRPIAVDVGVLPRVHGSGLFTRGQTQVLTVATLGSPGDEQRLDDLGIETT 379 Query: 57 GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 Y ST R + +L RAL + K +T+ L Sbjct: 380 RHYMHHYNFPAFSTGEARPSRG----PRRRDIGHGKLAERALVPVLPEKDKFPYTMRLVS 435 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGE------ 170 +VL ++G + AS+ G+ +AL+DA P+K VA V++G++ G+ Sbjct: 436 EVLASNGSSSMASVCGSSLALMDA-----------GVPIKAPVAGVAMGLITGKEAGQFS 484 Query: 171 AVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 + D++ +ED+ + D V T G I +Q + T+E + AR Sbjct: 485 VLTDIQGLEDALGDMDFKVAGTTAG-ITALQMDIKTTGITYEIMQQAFEQARQGR 538 Score = 61.2 bits (147), Expect = 3e-08, Method: Composition-based stats. Identities = 39/215 (18%), Positives = 68/215 (31%), Gaps = 19/215 (8%) Query: 12 RPVTLTRNYTKH-AEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRST 70 RP+T+ A G+VLV +GDT +L + + +T +Y + Sbjct: 16 RPLTIEAGRVAQLANGAVLVRYGDTVLLAAVTASAEPRDGIDFFP---LTVDYEEKMYAA 72 Query: 71 HTRNARE-AAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTAS 129 +G+ + RL R LR + +++ + Sbjct: 73 GKIPGSFFKREGRPTETAILTSRLTDRPLRPLFPKGYYNDVQVSITTLSTDQVNDPGPLA 132 Query: 130 ITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNV 189 I GA ALV + P V AV +G ++G + + D+ V Sbjct: 133 IIGASAALV-----------ISDIPFAAPVGAVQMGHIDGVFAVNPVMGLMENSRLDLVV 181 Query: 190 VMTEDGRIIEVQGTAEGEPFTHEELLILLALARGE 224 T + + A T E+L + Sbjct: 182 AGTSE---AVMMVEASAYELTEAEMLEAVKRGHEA 213 >UniRef50_Q8GZQ3 Polynucleotide phosphorylase n=19 Tax=cellular organisms RepID=Q8GZQ3_ARATH Length = 922 Score = 187 bits (475), Expect = 3e-46, Method: Composition-based stats. Identities = 54/242 (22%), Positives = 94/242 (38%), Gaps = 31/242 (12%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEE----GVPRFLKGQGQ- 56 R GR+ +++RP+ A GS L G+T+ L ++ + L+G + Sbjct: 447 RSDGRTLDEIRPINSRCGLLPRAHGSTLFTRGETQALAVVTLGDKQMAQRIDNLEGSDEY 506 Query: 57 GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 +Y P S G R + L RAL + +TI ++ Sbjct: 507 KRFYLQYTFPPSSVGEV----GRIGAPSRREIGHGTLAERALETILPSDDDFPYTIRVES 562 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGE------ 170 V++++G + AS+ G C+AL DA P+K VA +++G+V Sbjct: 563 TVIESNGSSSMASVCGGCLALQDA-----------GVPVKCSVAGIAMGMVWDTEEFGGD 611 Query: 171 ----AVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESN 226 + D+ ED++ + D V EDG + Q + T E + L A+ Sbjct: 612 GSPLILSDITGAEDASGDMDFKVAGNEDG-VTAFQMDIKVGGITLEIMEKALIQAKAGRR 670 Query: 227 PL 228 + Sbjct: 671 HI 672 Score = 68.9 bits (167), Expect = 1e-10, Method: Composition-based stats. Identities = 36/219 (16%), Positives = 69/219 (31%), Gaps = 23/219 (10%) Query: 12 RPVTLTRNYTKHAEGSV-LVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRST 70 R + + S V G+T V + + + + Y + Sbjct: 97 REILVETGLMGRQASSAVTVTDGETIVYTSVCL---ADVPSEPSDFLPLYVHYQERFSAV 153 Query: 71 HTRNARE-AAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADG--GTRT 127 + +G+ + I RLI R LR + E I VL DG Sbjct: 154 GRTSGGFFKREGRTKDHEVLICRLIDRPLRPTMPKGFYNETQI--LSWVLSYDGLHAPDA 211 Query: 128 ASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDM 187 ++T A +A+ + + +A V VG++ GE + + E ++ D+ Sbjct: 212 LAVTSAGIAVALSEVPNAKA-----------IAGVRVGLIGGEFIVNPTVKEMEESQLDL 260 Query: 188 NVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESN 226 + T+ + E LL + + + Sbjct: 261 FLAGTDTAILT---IEGYSNFLPEEMLLQAVKVGQDAVQ 296 >UniRef50_D1AX54 Polyribonucleotide nucleotidyltransferase n=2 Tax=Fusobacteriaceae RepID=D1AX54_STRM9 Length = 732 Score = 187 bits (474), Expect = 3e-46, Method: Composition-based stats. Identities = 56/235 (23%), Positives = 100/235 (42%), Gaps = 24/235 (10%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQG 57 R GR +++RP+ + K GS L G+T+ L TA++ +E + ++G+ Sbjct: 340 RADGRKIDEIRPLNAQIDVLKMPHGSALFTRGETQALVTATLGSKEDEQIIDGMEGEYNK 399 Query: 58 WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCD 117 Y P S G R + L RAL+A + L +T+ + + Sbjct: 400 KFFLHYNFPPFSVGEAGFMR----APGRRELGHGNLAERALKAVMPLIDDFPYTVRVVSE 455 Query: 118 VLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNG----EAVC 173 + +++G + ASI G +AL+ A P+KG VA +++G++ + Sbjct: 456 ITESNGSSSQASICGGSLALMAA-----------GVPIKGTVAGIAMGLIKEAENFTVLT 504 Query: 174 DLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 D++ +ED + D V T+ G I +Q + E E + I L A + Sbjct: 505 DIQGLEDHLGDMDFKVAGTKKG-ITAIQMDIKIEGINKEIMEIALTQAHKGRMHI 558 Score = 68.1 bits (165), Expect = 2e-10, Method: Composition-based stats. Identities = 47/220 (21%), Positives = 78/220 (35%), Gaps = 23/220 (10%) Query: 13 PVTLTRNYT-KHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTH 71 V + + A GSVLV + +GQ +T +Y +T Sbjct: 15 EVKIETGEIARQAGGSVLVT---SGGTTVLVTTTRSKEVKEGQDFFPLTVDYIEKFYATG 71 Query: 72 TRNARE-AAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADG--GTRTA 128 + K + I RLI R +R + + + +V+ DG Sbjct: 72 KFPGGFIKRESKPSTEEVLISRLIDRPIRPLFP-EGFFN-AVHVVINVVSFDGINMPEDI 129 Query: 129 SITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMN 188 + G AL L P G VA V+VG VNGE + + + + + + ++ Sbjct: 130 ATIGVSFAL-----------GLSDIPFSGPVAGVTVGYVNGEYIINPDKEQRANMDIYLS 178 Query: 189 VVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 V T+ I V+ A + EE+L + L E + Sbjct: 179 VAGTKS-AITMVEAGASE--VSEEEMLNAIMLGHEEIKKI 215 >UniRef50_A9TY02 Predicted protein n=3 Tax=Viridiplantae RepID=A9TY02_PHYPA Length = 246 Score = 186 bits (473), Expect = 4e-46, Method: Composition-based stats. Identities = 60/230 (26%), Positives = 94/230 (40%), Gaps = 20/230 (8%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKG-QGQGWI 59 +R GR ++R + A+GS L G+T+V+ V + + Sbjct: 11 LRLDGRRPPEMRHLHAVVGVVPSADGSALFHMGNTQVMAVVYGPHEVHNKAHQLHDKALV 70 Query: 60 TAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVL 119 EY M ST R R + E+ +I + L AA+ L I + VL Sbjct: 71 RCEYSMAAFSTGERRRRGKTDRRAT----ELSLVIGQTLEAAIMTHLLPRSQIDIYVQVL 126 Query: 120 QADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVE 179 QADGGTR A I A +AL DA PM+ +V + + G +N + DL Y E Sbjct: 127 QADGGTRAACINAASMALADA-----------GIPMRDLVVSCAAGYLNSTPLLDLNYQE 175 Query: 180 DSAAETDMNVV-MTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 DS D+ V + ++ +Q ++ + E +L LA + + Sbjct: 176 DSGGGPDLVVGYFPKLEKLSLLQMDSK---VSIETFEKVLELATEGAKAV 222 >UniRef50_A9NGE2 Polyribonucleotide nucleotidyltransferase n=5 Tax=Acholeplasmataceae RepID=PNP_ACHLI Length = 715 Score = 186 bits (473), Expect = 4e-46, Method: Composition-based stats. Identities = 51/237 (21%), Positives = 96/237 (40%), Gaps = 25/237 (10%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQG- 55 +RP GR +++RP+ + + GS L G T+ L ++ E + L+ + Sbjct: 327 VRPDGRGLDEIRPLASSVDLLPRTHGSALFTRGQTQALGIVTLGSLNENQIIDGLEQETV 386 Query: 56 QGWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLD 115 Y P S G G R + L RAL + + + I + Sbjct: 387 TKRFMLHYNFPPFSVGE----TGRYGAPGRREIGHGALGERALLQVLPSEDEFPYAIRVV 442 Query: 116 CDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV----NGEA 171 ++ +++G + A+I +AL+ A P+K VA +++G++ + Sbjct: 443 SEITESNGSSSQATICVGSMALMAA-----------GVPIKAPVAGIAMGLIMDGEHYSI 491 Query: 172 VCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 + D++ +ED + D V T+DG I +Q + + T E + L AR + Sbjct: 492 LSDIQGMEDHEGDMDFKVAGTKDG-ITALQMDIKIQGITTEIMKEALEQARKGRLHI 547 Score = 77.4 bits (189), Expect = 4e-13, Method: Composition-based stats. Identities = 45/220 (20%), Positives = 84/220 (38%), Gaps = 24/220 (10%) Query: 13 PVTLTRNYT-KHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTH 71 P+ + K A G+ ++ +GDT VL TA + V + + Y + Sbjct: 14 PLRVEVGEIAKQANGAAMIYYGDTVVLSTAVAKAKVGQTDFFP----LMVIYAEKQYAAG 69 Query: 72 TRNAR-EAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQAD--GGTRTA 128 +G+ RLI R LR D + + VL +D ++ A Sbjct: 70 KIPGGFFRREGRPSEVETLTSRLIDRPLRPLFD--DGYRNEVQVVNTVLSSDPEASSQMA 127 Query: 129 SITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMN 188 ++ G+ +AL ++ P G +A VG ++G+ V + + + ++ D+ Sbjct: 128 AMLGSSIAL-----------EISNIPFMGPIAGAHVGRIDGQFVLNPSSEQLNVSDIDLI 176 Query: 189 VVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 V T+D I V+ A+ + E +L + L Sbjct: 177 VAGTKD-AINMVEAGAKQ--VSEEVMLEAILFGHEAIKEL 213 >UniRef50_C9KNG5 tRNA nucleotidyltransferase n=2 Tax=Firmicutes RepID=C9KNG5_9FIRM Length = 248 Score = 186 bits (473), Expect = 4e-46, Method: Composition-based stats. Identities = 132/228 (57%), Positives = 162/228 (71%), Gaps = 3/228 (1%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 RP R+ + +RP + R++ K+ GSVL+E G+TKV+C ASIE+ VP FL+G G+GWI A Sbjct: 3 RPDRRTADALRPYEMHRHFQKYPAGSVLIEMGNTKVICAASIEDRVPFFLRGTGEGWIAA 62 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQA 121 EY +LP +T TR REA +GKQ GRT EI+RLI R+LR+ VD KALGE TI +DCDV+QA Sbjct: 63 EYSLLPSATETRTQREAVRGKQSGRTQEIERLIGRSLRSVVDTKALGERTIMIDCDVIQA 122 Query: 122 DGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGI-VNGEAVCDLEYVED 180 DGGTRTASITGA VALV+A E GK+ P+K ++A+SVG+ G + DL Y ED Sbjct: 123 DGGTRTASITGAFVALVEACASFYEKGKI--FPVKDFLSAISVGVSHEGVPILDLCYEED 180 Query: 181 SAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 S A DMNVVMT GR +EVQGT EG PFTHEEL LLAL L Sbjct: 181 SRAIVDMNVVMTGVGRFVEVQGTGEGRPFTHEELGELLALGEKGCREL 228 >UniRef50_Q6PBZ8 Exosc4 protein n=10 Tax=Metazoa RepID=Q6PBZ8_DANRE Length = 245 Score = 186 bits (472), Expect = 5e-46, Method: Composition-based stats. Identities = 57/229 (24%), Positives = 87/229 (37%), Gaps = 21/229 (9%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQ--GQGWI 59 R GR ++R V + A+GS +E G+TK L + + I Sbjct: 13 RLDGRKATELRKVQARMSVFAQADGSAYLEQGNTKALAVVYGPHEIRGSRSKSLHDRAII 72 Query: 60 TAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVL 119 +Y M ST R R ++ E+ + + AAV + I + +L Sbjct: 73 NCQYSMATFSTAERKRRPHG----DRKSSEMSLHLKQTFEAAVLTELYPRSQIDIYVKIL 128 Query: 120 QADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVE 179 QADGG +A + A +ALVDA PM+ V A S G V + DL + E Sbjct: 129 QADGGNYSACVNAATLALVDA-----------GIPMRDYVCACSAGFVEDTPLADLCHAE 177 Query: 180 DSAAETDMNVV-MTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNP 227 +S T + + + G I +Q A + L L+ A Sbjct: 178 ESGGGTALALALLPRSGNIALLQMDAR---LHQDHLDTLMEAAMTACKE 223 >UniRef50_D0WEI7 Polyribonucleotide nucleotidyltransferase n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WEI7_9ACTN Length = 769 Score = 186 bits (472), Expect = 5e-46, Method: Composition-based stats. Identities = 54/235 (22%), Positives = 99/235 (42%), Gaps = 24/235 (10%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQG 57 R GR+ ++RP+ + Y GS L + G T+V+ A++ E + Q Sbjct: 345 RADGRAPEEIRPLYIRPGYLPRVHGSGLFQRGQTQVMSVATLGLLNEAQRLDTIDPQTTR 404 Query: 58 WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCD 117 +Y P T G R + L RA+ + + ++I + + Sbjct: 405 RYMHQYNFPPYCTGEV----GRMGAPKRREVGHGALAERAILPVLPNEDEFPYSIRVVSE 460 Query: 118 VLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGE----AVC 173 VL+++G + AS G+C+AL+DA P+K V+ V++G++ + + Sbjct: 461 VLESNGSSSMASTCGSCLALMDA-----------GVPIKAPVSGVAMGLIKEDDGVVILS 509 Query: 174 DLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 D++ +ED + D V T +G I +Q + + E L LA A+ + Sbjct: 510 DIQGLEDFLGDMDFKVTGTPEG-ITALQMDNKARGLSTEILGRALAQAKEGRAHI 563 Score = 46.9 bits (110), Expect = 5e-04, Method: Composition-based stats. Identities = 34/213 (15%), Positives = 70/213 (32%), Gaps = 22/213 (10%) Query: 16 LTRNYT-KHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTHTRN 74 K A G+VLV G+T VL T+ I + + +T ++ + Sbjct: 47 FETGELAKQATGAVLVRQGETTVLVTSVISKEEKDYDFFP----LTVDFMEKMYAVGRIP 102 Query: 75 ARE-AAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTASITGA 133 +G+ + R++ R +R + + + DG + Sbjct: 103 GGYLKREGRASDKGTLTARMVDRPIRPG--FAEGFKQEVHVVATTFAIDGENAPDCMCVG 160 Query: 134 CVALVDALQKLVENGKLKTNPMKGMVAAVSVGI--VNGEAVCDLEYVEDSAAETDMNVVM 191 + + P G VA V + E + + Y E ++ ++ + Sbjct: 161 ---------GASAALLIASAPFDGPVACVRIARNAETREFIVNPTYAEQETSDLELTIAG 211 Query: 192 TEDGRIIEVQGTAEGEPFTHEELLILLALARGE 224 T+D I V+ A+ E++L + + Sbjct: 212 TKD-YISMVEAGADQVG--EEDMLAAMNFGQEA 241 >UniRef50_C5A2B8 Probable exosome complex exonuclease 2 n=20 Tax=Euryarchaeota RepID=ECX2_THEGJ Length = 273 Score = 185 bits (471), Expect = 6e-46, Method: Composition-based stats. Identities = 57/245 (23%), Positives = 97/245 (39%), Gaps = 25/245 (10%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GRS + R + + + + AEGS V G T+VL ++ G P F +G +T Sbjct: 24 RIDGRSFEEYRDIEIKTGFIEKAEGSAWVRLGGTRVLVGIKVDVGEP-FPDLPDRGVMTT 82 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARA--------LRAAVDLKALGEFTIT 113 ++P ++ T G R +E+ R+I R L V + + Sbjct: 83 NVELVPLASPTFEP-----GPPDERAIELARVIDRGIRESQAVELEKLVIVPGKLVRVVF 137 Query: 114 LDCDVLQADGGTRTASITGACVALVDALQKLVENGKLKT----------NPMKGMVAAVS 163 +D VL DG A+ A AL+ VE + P+K + V+ Sbjct: 138 IDVHVLDHDGNLFDATGLAAMAALMTTKIPKVEYNEETGEIIKLDEYEPLPVKHVPIPVT 197 Query: 164 VGIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARG 223 + + D E++ ++ + + E G I VQ EG F EE++ + A Sbjct: 198 FAKIGSSIIVDPNLDEETVMDSRLTITTDETGHISAVQK-GEGGSFKLEEVMYAIDTALK 256 Query: 224 ESNPL 228 +++ L Sbjct: 257 KADEL 261 >UniRef50_D1CFI4 Ribonuclease PH n=3 Tax=Bacteria RepID=D1CFI4_THET1 Length = 245 Score = 185 bits (471), Expect = 7e-46, Method: Composition-based stats. Identities = 124/228 (54%), Positives = 152/228 (66%), Gaps = 3/228 (1%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +R GR N++RP ++ GS +++ G TKVLC ASI+EGVP+FL+G GQGW+T Sbjct: 6 IRVDGRKPNELRPHSIEIYPLAFPPGSAIIQCGVTKVLCAASIQEGVPKFLEGTGQGWLT 65 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 AEY MLP ST TR RE+ G+ GRT EIQRLI R+LRAAV L +GE TI +DCDVLQ Sbjct: 66 AEYSMLPASTQTRTPRESHTGRLQGRTQEIQRLIGRSLRAAVKLDQIGEITIIVDCDVLQ 125 Query: 121 ADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVED 180 ADGGTRTASITG VA V AL+K+ + + VAAVSVGIVNG + DL Y ED Sbjct: 126 ADGGTRTASITGGYVATVLALRKIFPDTYRD---LVSPVAAVSVGIVNGTPMLDLNYAED 182 Query: 181 SAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 S A+TD+NVV G IE+Q TAE F+ EEL +L+LA L Sbjct: 183 STADTDLNVVKNHLGDYIEIQATAERVSFSREELDAMLSLADKGIAEL 230 >UniRef50_B5E2A0 Polyribonucleotide nucleotidyltransferase n=202 Tax=Bacteria RepID=PNP_STRP4 Length = 737 Score = 185 bits (470), Expect = 1e-45, Method: Composition-based stats. Identities = 55/236 (23%), Positives = 93/236 (39%), Gaps = 24/236 (10%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTAS----IEEGVPRFLKGQGQ 56 +RP GR +++RP+ ++ GS L G T+ L + E + L + + Sbjct: 317 VRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 376 Query: 57 GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 Y S G G R + L RAL + + I L Sbjct: 377 KRFMHHYNFPQYSVGE----TGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAIRLVA 432 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV----NGEAV 172 +VL+++G + ASI +AL+ P+K VA +++G++ N + Sbjct: 433 EVLESNGSSSQASICAGTLALM-----------AGGVPIKAPVAGIAMGLISDGNNYTVL 481 Query: 173 CDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 D++ +ED + D V T DG I +Q + + T E L LA A+ + Sbjct: 482 TDIQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEI 536 Score = 83.9 bits (206), Expect = 4e-15, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 77/221 (34%), Gaps = 24/221 (10%) Query: 12 RPVTLTRN-YTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRST 70 R + + K A GSV+V +G++ VL A + + + + Y + Sbjct: 13 RELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFP----LQVNYEEKMYAA 68 Query: 71 HTRNARE-AAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTR--T 127 +G+ RLI R +R + + VL D Sbjct: 69 GKFPGGFMKREGRPSTDATLTARLIDRPIRP--MFAEGFRNEVQVINTVLSYDENASAPM 126 Query: 128 ASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDM 187 A++ G+ +AL + P G +A V VG V+G+ + + + + ++ Sbjct: 127 AAMFGSSLAL-----------SISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLEL 175 Query: 188 NVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 V T+ I V+ A+ + E +L L L Sbjct: 176 TVAGTKH-AINMVESGAKE--LSEEIMLEALLKGHEAVKEL 213 >UniRef50_C1RJ73 RNAse PH n=1 Tax=Cellulomonas flavigena DSM 20109 RepID=C1RJ73_9CELL Length = 328 Score = 185 bits (469), Expect = 1e-45, Method: Composition-based stats. Identities = 133/226 (58%), Positives = 160/226 (70%), Gaps = 2/226 (0%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +R GR +++RPVT+TR + EGSVLVEFG TKVLC AS EGVPR+ KG G+GW+T Sbjct: 72 VRKDGRRADELRPVTITRRFLDAGEGSVLVEFGGTKVLCVASFTEGVPRWRKGSGEGWVT 131 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 AEY MLPR+T++R+ RE+ +GK GGRT EI RL+ R+LRA VD+ ALGE TI LDCDVLQ Sbjct: 132 AEYAMLPRATNSRSDRESVRGKVGGRTHEISRLVGRSLRAVVDVAALGENTIVLDCDVLQ 191 Query: 121 ADGGTRTASITGACVALVDALQKLVENGKLKT--NPMKGMVAAVSVGIVNGEAVCDLEYV 178 ADGGTRTA+ITGA VAL DA+ +K ++ VAA+SVG+V+G V DL Y Sbjct: 192 ADGGTRTAAITGAYVALADAVAWATTKRLVKPGRTVLRDSVAAISVGVVDGVPVLDLPYE 251 Query: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGE 224 ED AETDMNVV T G +EVQGTAE PF EL LL LA Sbjct: 252 EDVRAETDMNVVTTGAGAFVEVQGTAEHAPFDRAELDALLDLAVAG 297 >UniRef50_B7KB81 Ribonuclease PH n=7 Tax=Bacteria RepID=RNPH_CYAP7 Length = 242 Score = 185 bits (469), Expect = 1e-45, Method: Composition-based stats. Identities = 119/227 (52%), Positives = 155/227 (68%), Gaps = 2/227 (0%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 RP R +Q+RP+ NY++ GSVL G+T+VLCTA+I+ VP+FL G+GW+TA Sbjct: 5 RPDSRQPDQLRPILFETNYSRFRVGSVLAHCGETRVLCTATIQPNVPKFLLNSGKGWLTA 64 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQA 121 EY MLP +T R +RE + GRT EIQRLI R+LRA +D + LGE TI +D DVLQA Sbjct: 65 EYRMLPGATPERQSRELM--QLSGRTQEIQRLIGRSLRACLDFERLGERTIIIDTDVLQA 122 Query: 122 DGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDS 181 D GTRT +ITG +AL A++KL+E G+L+ +P+K VAAVSVG++ GE DL Y ED+ Sbjct: 123 DAGTRTTAITGGYIALGLAIKKLLEVGELQESPLKLPVAAVSVGLIEGEPFLDLNYAEDT 182 Query: 182 AAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 AAE D NVVMT + +IEVQGTAE F+ +L LL LA+ L Sbjct: 183 AAEVDFNVVMTGNLDLIEVQGTAESGSFSRLQLNQLLDLAQTGIQEL 229 >UniRef50_Q8TGX5 Probable exosome complex exonuclease 2 n=8 Tax=Archaea RepID=ECX2_METAC Length = 266 Score = 185 bits (469), Expect = 1e-45, Method: Composition-based stats. Identities = 61/237 (25%), Positives = 100/237 (42%), Gaps = 17/237 (7%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR R + L N AEGS V G+T+VL ++ G P F Q +G I Sbjct: 25 RQDGRGFKDFRDLKLETNVIVKAEGSAKVTLGNTQVLVGVKLQTGTP-FPDSQDEGVIIT 83 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRA--AVDLKALG------EFTIT 113 + P ++ G +E+ R++ R +R A+D+K L + + Sbjct: 84 NLELNPIASPEFEP-----GPPREEAIEMARVVDRGIRESGAIDIKKLCITVGESVWIVF 138 Query: 114 LDCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNP--MKGMVAAVSVGIVNGEA 171 +D VL DG AS A AL+ + + G + P MK M +++ + + Sbjct: 139 IDVHVLNDDGNIIDASCLAAIAALMTTMVPNEQQGLGEDVPLAMKEMPVGITIAKIGSKL 198 Query: 172 VCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 + D E++ ET + +V + DG + +Q P T EL + LA ++ L Sbjct: 199 MVDPSLDEEAVCETKLTIVSSSDGSVAGMQKMG-ISPLTEAELFEAIDLALEKAAEL 254 >UniRef50_D1Y1M0 Polyribonucleotide nucleotidyltransferase n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y1M0_9BACT Length = 751 Score = 185 bits (469), Expect = 1e-45, Method: Composition-based stats. Identities = 50/238 (21%), Positives = 93/238 (39%), Gaps = 26/238 (10%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI------EEGVPRFLKGQ 54 +R GR+ +++RP++ N GS L G+T+ L ++ ++ + + Sbjct: 311 IRADGRATDEIRPISCEVNVLPKVHGSALFTRGETQALVVTTLGMLGEDDQIIDGLKLDE 370 Query: 55 GQGWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITL 114 Y P S G R + L RAL V + + + + Sbjct: 371 PNKRFLLHYNFPPYSVGEIKPMRG----PGRREIGHGALAERALAPLVPGEEEFPYVVRV 426 Query: 115 DCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNG----E 170 D+L+++G + ASI G ++++ A PMK VA +++G++ Sbjct: 427 VSDILESNGSSSQASICGGSLSMMAA-----------GVPMKKHVAGIAMGLIKEGDDMV 475 Query: 171 AVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 + D++ +ED + D V T DG + +Q + T E L L A + Sbjct: 476 ILTDIQGLEDHYGDMDFKVAGTRDG-VTALQMDNKAGGITREILSRALMQAHQARMQI 532 Score = 60.0 bits (144), Expect = 5e-08, Method: Composition-based stats. Identities = 41/214 (19%), Positives = 75/214 (35%), Gaps = 26/214 (12%) Query: 20 YTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTHTRNARE-A 78 K A +V+ G+T +L TA + + L + ++ + Sbjct: 21 VAKQANAAVVASHGETTILTTACMSDKPRVGLDFFP---LLVDFEERYYAAGKIPGGYIK 77 Query: 79 AKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQAD----GGTRTASITGAC 134 +G+ + R++ R++R+ D + + VL D +I A Sbjct: 78 REGRPSQTAILSARVVDRSIRSLFDDSM--RNDVHVVATVLAVDQKNPANIL--AINAAS 133 Query: 135 VALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNVVMTED 194 +AL + P G V AV +G ++GE V + + + D+ V Sbjct: 134 MAL-----------TISDIPWSGPVGAVRMGCIDGELVVNPTEDRMAESTLDLTVAG-HA 181 Query: 195 GRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 G I V+ A E L+ L A+ E + Sbjct: 182 GGITMVEAGARE--VPEELLVNALQTAQDEIKKI 213 >UniRef50_Q2S1P1 Polyribonucleotide nucleotidyltransferase n=1 Tax=Salinibacter ruber DSM 13855 RepID=PNP_SALRD Length = 712 Score = 185 bits (469), Expect = 1e-45, Method: Composition-based stats. Identities = 50/235 (21%), Positives = 92/235 (39%), Gaps = 24/235 (10%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQG 57 R GR VR + + Y GS + G+T+VL + ++ + + Sbjct: 322 RIDGRDQTDVRDLWMEVGYLPRVHGSAIFTRGETQVLGSITLGTSDDVQPVDEVFADTDK 381 Query: 58 WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCD 117 Y P S + R + L RALR + + +TI ++ D Sbjct: 382 SFYLHYRFPPFSVGEASYLRG----PKRREIGHSMLAERALRPVIPEQDEFPYTIRINAD 437 Query: 118 VLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNG----EAVC 173 V++++G + AS+ +AL+DA P++ VA +++G+V + Sbjct: 438 VMESNGSSSMASVCAGSLALMDA-----------GVPIEKPVAGIAMGLVQEDDETTVLT 486 Query: 174 DLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 D+ ED + D + T DG I Q + E + + +L L +R + + Sbjct: 487 DILGQEDHLGDMDFKLTGTRDG-ITACQMDMKIEGLSRDVMLKALKQSRDARHHI 540 Score = 68.5 bits (166), Expect = 1e-10, Method: Composition-based stats. Identities = 43/188 (22%), Positives = 71/188 (37%), Gaps = 23/188 (12%) Query: 12 RPVTLTRNYT-KHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRST 70 R ++L K A+GSV+ GDT VL TA++ + V +T +Y + Sbjct: 16 RSLSLETGRIAKQADGSVVARLGDTMVLSTATLSDSVNESNFFP----LTVDYREKFAAG 71 Query: 71 HTRNARE-AAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTAS 129 +G+ + RLI RA+R + + V+ A G A Sbjct: 72 GKVPGGFIKREGRPTDKETLTSRLIDRAIRPLFPDGFY--HDVHVVNFVISA-GQDFDAD 128 Query: 130 ITG---ACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETD 186 + + AL+ L P G A V VG V+G+ + + + ++ D Sbjct: 129 VIAGVGSSAALM-----------LSGAPFAGPFAEVRVGRVDGDYIVNPTMQQTEESDID 177 Query: 187 MNVVMTED 194 + V ED Sbjct: 178 LVVAGKED 185 >UniRef50_D1PLM8 Polyribonucleotide nucleotidyltransferase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLM8_9FIRM Length = 759 Score = 184 bits (467), Expect = 2e-45, Method: Composition-based stats. Identities = 58/237 (24%), Positives = 94/237 (39%), Gaps = 29/237 (12%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQG 57 R GR N++RP+ GS + G T+VL ++ + + L Sbjct: 363 RVDGRGINEIRPLAAEVGLLPRVHGSGMFTRGQTQVLTVCTLGSTKDAQLMDDLSDTQYK 422 Query: 58 WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCD 117 Y P S A + G R + L RAL + ++ +TI + Sbjct: 423 RYIHHYNFPPYSVGEARAPRS----PGRREIGHGNLAERALVPVLPDQSEFPYTIRCVSE 478 Query: 118 VLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV-NGEAV---- 172 VL ++G T ASI G+ +AL+DA P+K VA +S G++ +G+ + Sbjct: 479 VLSSNGSTSQASICGSTLALMDA-----------GVPIKAPVAGISCGLITDGDPLHGGR 527 Query: 173 ----CDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 D++ VED + D V T G I +Q + + T+E + L R Sbjct: 528 WMTMLDIQGVEDFHGDMDFKVGGTRRG-ITAIQMDIKVDGLTYEIVEEALEKCRKGR 583 Score = 83.9 bits (206), Expect = 4e-15, Method: Composition-based stats. Identities = 38/219 (17%), Positives = 79/219 (36%), Gaps = 19/219 (8%) Query: 12 RPVTLTRNYTKH-AEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRST 70 RP + A GS +V +GDT VLC ++ E + ++ E+ + Sbjct: 66 RPFVVETGKMCGLANGSAMVRYGDTCVLCNVTMSEKPREGVDFFP---LSVEFEEKLYAA 122 Query: 71 HTRNARE-AAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTAS 129 +G+ G + R++ R +R + +T+ L D Sbjct: 123 GRIPGSFMRREGRPGEHAILSSRVVDRPIRPLFPKDMRNDVCVTMTVMSLDPDNSAEITG 182 Query: 130 ITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNV 189 + GA +A+ + P G +A V VG+V+GE V + + ++ + + Sbjct: 183 MNGASLAIA-----------MSDIPWNGPIAGVFVGLVDGEIVLNPTKEQREHSDLSLTL 231 Query: 190 VMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 + +I+ ++ A ++ + E + Sbjct: 232 A-ASEEKIVMIEAGANE--VDEATMMEAIKAGHAEIKKM 267 >UniRef50_C9KKD1 Polyribonucleotide nucleotidyltransferase n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KKD1_9FIRM Length = 689 Score = 184 bits (466), Expect = 2e-45, Method: Composition-based stats. Identities = 54/233 (23%), Positives = 94/233 (40%), Gaps = 24/233 (10%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTAS----IEEGVPRFLKGQGQ 56 +RP GR +VRPV+ GS L G T++L + +E V L + Sbjct: 310 IRPDGREVEEVRPVSCEVGLLPRTHGSGLFTRGQTQILTVTTLGSLGDEQVIDGLGPETT 369 Query: 57 GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 Y S + G R + L RAL + +TI L Sbjct: 370 KHYIHHYNFPGYSVGEARPMRS----PGRREIGHGALAERALVPVIPSIEEFPYTIRLVS 425 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVN----GEAV 172 +VL+++G + S+ G+ ++L++A P+K V+ V++G+V + Sbjct: 426 EVLESNGSSSMGSVCGSTLSLMNA-----------GVPIKRPVSGVAMGLVKEGDQYTIL 474 Query: 173 CDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 D++ +ED+ + D V T +G I +Q + + + E L L A+ Sbjct: 475 TDIQGMEDALGDMDFKVAGTTEG-ITAIQMDIKVDGLSREILSAALQQAKRGR 526 Score = 72.7 bits (177), Expect = 1e-11, Method: Composition-based stats. Identities = 45/211 (21%), Positives = 75/211 (35%), Gaps = 23/211 (10%) Query: 12 RPVTLTRNYT-KHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRST 70 RP+ + K A G+VLV +GDT VL TA+ + +T +Y + Sbjct: 11 RPLVIENGQLAKQANGAVLVRYGDTVVLVTATASAEPREGVDFFP---LTVDYEEKMYAA 67 Query: 71 HTRNARE-AAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVL--QADGGTRT 127 +G+ + RLI R +R + + VL + D Sbjct: 68 GKIPGGFIKREGRPSSDAILCARLIDRPIRPLFP--KGFRNDVQIVATVLSVEQDNAPEL 125 Query: 128 ASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDM 187 A++ GA AL + P G +A V VG VN E V + + + ++ Sbjct: 126 AAMIGASCAL-----------TVSDIPFMGPIAGVRVGRVNDEFVINPTEEQRKVSTLNL 174 Query: 188 NVVMTEDGRIIEVQGTAEGEPFTHEELLILL 218 V + D + A + +L + Sbjct: 175 TVAGSHD---AVMMVEAGANELPEDVILDAI 202 >UniRef50_C7MNH4 Polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) n=7 Tax=Coriobacteriaceae RepID=C7MNH4_CRYCD Length = 742 Score = 183 bits (465), Expect = 4e-45, Method: Composition-based stats. Identities = 49/232 (21%), Positives = 91/232 (39%), Gaps = 24/232 (10%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQG 57 R GR+ +++RP+ + Y GS L + G T+ L ++ E + Sbjct: 315 RVDGRAADEIRPLYIRPGYLPRVHGSGLFQRGQTQALSVCTLGTLREGQRLDTIDPSEGK 374 Query: 58 WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCD 117 +Y P T G R + L RAL + + + I + + Sbjct: 375 RYMHQYNFPPYCTGEV----GRIGAPKRREIGHGALAERALIPVLPSEDDFPYAIRVVSE 430 Query: 118 VLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNG----EAVC 173 +L+++G + AS G+ +AL+DA P+ V+ +++G++ + Sbjct: 431 ILESNGSSSMASTCGSTLALMDA-----------GVPITAPVSGIAMGLIKEGDETVILS 479 Query: 174 DLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 D++ +ED + D V T G I +Q + + E L LA A+ Sbjct: 480 DIQGLEDFLGDMDFKVTGTARG-ITALQMDNKARGLSTEILGRALAQAKEGR 530 Score = 50.8 bits (120), Expect = 4e-05, Method: Composition-based stats. Identities = 37/214 (17%), Positives = 69/214 (32%), Gaps = 22/214 (10%) Query: 15 TLTRNYT-KHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTHTR 73 L K A G+VLV G+T L TA + + + +T ++ + Sbjct: 16 RLETGELAKQATGAVLVTQGETTCLVTAVVSKEEKDYDFFP----LTVDFMEKMYAVGRI 71 Query: 74 NARE-AAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTASITG 132 +GK + R+I R +R + + + ADG I Sbjct: 72 PGGYLKREGKASDKGTLTARMIDRPIRPGFP--DGFKQEVHIVATTFVADGQNPPDCIC- 128 Query: 133 ACVALVDALQKLVENGKLKTNPMKGMVAAVSVG--IVNGEAVCDLEYVEDSAAETDMNVV 190 + P G A V + + GE + + Y E ++ ++ + Sbjct: 129 --------VGGASAALLAGGAPFDGPAACVRIARNVETGEFIVNPTYAEQEESDLELTIA 180 Query: 191 MTEDGRIIEVQGTAEGEPFTHEELLILLALARGE 224 T D I + E + E++L + + Sbjct: 181 GTAD--YISMVEAGANE-VSEEDMLAAMNFGQEA 211 >UniRef50_C1TQM6 Polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TQM6_9BACT Length = 749 Score = 183 bits (465), Expect = 4e-45, Method: Composition-based stats. Identities = 48/237 (20%), Positives = 92/237 (38%), Gaps = 26/237 (10%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI------EEGVPRFLKGQG 55 R GR +++R ++ + GS + G+T+ L TA++ ++ + + Sbjct: 312 RADGRKTDELRSLSCEVDVLPKVHGSAVFTRGETQSLATATLGMLGEDDQLIDGLKHNEP 371 Query: 56 QGWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLD 115 Y P S G R + L RAL + + + + Sbjct: 372 NKSFLLHYNFPPYSVGEVRPMRG----PGRREIGHGALAERALTPIIPDDTEFPYVVRVV 427 Query: 116 CDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNG----EA 171 D+L+++G + ASI G +AL+ A P+K VA +++G++ Sbjct: 428 SDILESNGSSSQASICGGSLALMSA-----------GVPIKRHVAGIAMGLIKEGDDVVV 476 Query: 172 VCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 + D++ +ED + D V T +G + +Q + T E L L A+ + Sbjct: 477 LTDIQGLEDHYGDMDFKVAGTREG-VTALQMDNKAGGITREILKQALGQAKDARMAI 532 Score = 67.0 bits (162), Expect = 4e-10, Method: Composition-based stats. Identities = 42/222 (18%), Positives = 78/222 (35%), Gaps = 27/222 (12%) Query: 13 PVTLTRN-YTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTH 71 + K A GSV GDT +L TA + + L + ++ S Sbjct: 13 ELVFETGKVAKQANGSVWARQGDTVILTTACMTDKPREGLDFFP---LLVDFEERFYSAG 69 Query: 72 TRNARE-AAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQAD----GGTR 126 +G+ + R+I R++R+ ++ + + VL D Sbjct: 70 KIPGGFIKREGRPSQTAILSARVIDRSIRSL--FESWMRHDVHVVSTVLSVDQHNPPNIL 127 Query: 127 TASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETD 186 +I A AL + P G V AV +G ++G V + E+ + Sbjct: 128 --AINAASAAL-----------TISDIPWGGPVGAVRIGYIDGSLVVNPT--EEMMENSS 172 Query: 187 MNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 + +V++ I + E + L+ + LA+GE + Sbjct: 173 LELVVSGHSDGITMVEAGAQE-VPEDLLVDAMELAQGEIKRI 213 >UniRef50_B9E1K8 Polyribonucleotide nucleotidyltransferase n=15 Tax=Clostridiales RepID=PNP_CLOK1 Length = 708 Score = 183 bits (464), Expect = 5e-45, Method: Composition-based stats. Identities = 54/234 (23%), Positives = 95/234 (40%), Gaps = 26/234 (11%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTAS----IEEGVPRFLKGQGQG 57 R GR ++VRP++ + A G+ L G T+V+ + + + + + Sbjct: 312 RVDGREFDEVRPISCEVGFLPRAHGTGLFTRGLTQVMTVVTLGSLGDVQILDGVGLEDSK 371 Query: 58 WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCD 117 Y ST G R + L +AL + ++ +TI L + Sbjct: 372 RYMHHYNFPSYSTGEVRPLRG----PGRREIGHGALAEKALEPLIPMEEQFPYTIRLVSE 427 Query: 118 VLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV------NGEA 171 VL ++G T ASI G+ +AL+DA P+K A +++G+V E Sbjct: 428 VLSSNGSTSQASICGSTLALLDA-----------GVPIKRPAAGIAMGLVTSEDLSQEEI 476 Query: 172 VCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 + D++ +ED + D V TE G I +Q + +++ + L AR Sbjct: 477 LTDIQGLEDFFGDMDFKVGGTEKG-ITAIQFDTKIHGLSNKCIKETLEKARTAR 529 Score = 63.5 bits (153), Expect = 5e-09, Method: Composition-based stats. Identities = 39/228 (17%), Positives = 76/228 (33%), Gaps = 29/228 (12%) Query: 5 GRSNNQVRPVTLT-RNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEY 63 GR+ V + +L+ +GDT VL A+ + + ++ EY Sbjct: 11 GRTL----KVDCEKVGMLSNCG--MLISYGDTVVLINANASDKPREGIDFFP---LSIEY 61 Query: 64 GMLPRSTHTRNARE-AAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQAD 122 S +GK + + R I R LR + + C VL D Sbjct: 62 EERLYSVGKIPGGFIKREGKPSEKAILNARAIDRPLRPLFP--KGYRNDVQVVCTVLSVD 119 Query: 123 GGTRT--ASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVED 180 ++ GA +AL + + P V +V+VG+V+G + + + Sbjct: 120 QDNLPNIVAMNGASLALC-----------ISSIPFITPVGSVAVGLVDGNFIINPNLEDR 168 Query: 181 SAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 + ++ V T++ + A + + + E + Sbjct: 169 EKSTLNLTVCATKER---VMMVEAGACEVPEDIMYDAIIFGFEECKKI 213 >UniRef50_Q2GJV5 Polyribonucleotide nucleotidyltransferase n=138 Tax=cellular organisms RepID=PNP_ANAPZ Length = 838 Score = 180 bits (458), Expect = 2e-44, Method: Composition-based stats. Identities = 52/232 (22%), Positives = 95/232 (40%), Gaps = 24/232 (10%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQG 57 R GR+ +Q+R + + + A GS L GDT+ L ++ +E + G + Sbjct: 323 RIDGRAYDQIRNIEIEVDLISKAHGSALFTRGDTQALVITALGTPQDEQIVDGFDGDKRE 382 Query: 58 WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCD 117 Y P + +A G R + +L RA+ + KA +TI + + Sbjct: 383 RFLLHYNFPPYAVGEASALRP----PGRREIGHGKLAWRAIHPVLPSKADFPYTIRVVSE 438 Query: 118 VLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVN----GEAVC 173 + ++DG + A++ GA +AL+D P+K VA +++G++ + Sbjct: 439 ITESDGSSSMATVCGASLALMDT-----------GVPLKSSVAGIAMGLIKEGDRYAILS 487 Query: 174 DLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 D+ ED + D V T +G I +Q + + L L A+ Sbjct: 488 DILGDEDYLGDMDFKVAGTREG-ITALQMDMKVKGIDFAVLGTALDQAKEGR 538 Score = 74.7 bits (182), Expect = 2e-12, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 79/223 (35%), Gaps = 26/223 (11%) Query: 12 RPVTLTRN-YTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRST 70 R +T+ + A G+V+V++G T VL T + + +T ++ + Sbjct: 14 RSLTIESGKIARQAGGAVVVDYGGTSVLATV----VSQKSKEAVDFLPLTVQFLAKSYAV 69 Query: 71 HTRNAR-EAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGT--RT 127 +GK R I R+I R++R + + C++L D + T Sbjct: 70 GKIPGGFFKREGKPSDRETLISRIIDRSIRPLFPSG--FSDEVAVVCNLLSYDASSPPET 127 Query: 128 ASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGE--AVCDLEYVEDSAAET 185 ++ GA AL + P VA +G + GE + + E S + Sbjct: 128 VALIGASAALA-----------ISGIPFHCPVAGARIGYIRGEGRYILNPSADELSVSAL 176 Query: 186 DMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 DM T+ + +E T E+L L + Sbjct: 177 DMFYARTDTS---ILMVESEAHELTEAEMLGALQFGHEHCEEI 216 >UniRef50_Q6L223 Ribonuclease PH n=1 Tax=Picrophilus torridus RepID=Q6L223_PICTO Length = 239 Score = 180 bits (457), Expect = 3e-44, Method: Composition-based stats. Identities = 66/229 (28%), Positives = 111/229 (48%), Gaps = 20/229 (8%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +R GR+ N++RP+ +T +A+GS +E+G K++ + E P+ + + + Sbjct: 12 LRLDGRAFNEMRPIRITTGVVDNADGSAYIEWGANKIVVAVYVREAYPKHAQNIDKAIVK 71 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 A Y M S R RTMEI +LI+ AL +A+ ++ L I + +VL+ Sbjct: 72 ARYNMAGFSVEERKRPG-----PDRRTMEISKLISEALESAIMVERLPRAEIDVYIEVLE 126 Query: 121 ADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVED 180 AD GTR AS+T A VA+ DA PMK + + G NG+ V DL ED Sbjct: 127 ADAGTRIASLTAASVAVADA-----------GIPMKDLPVGCTAGKANGKVVLDLSKDED 175 Query: 181 SAAETDM-NVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 + + D+ ++ + G+II +Q + + +EL + + G + Sbjct: 176 NYGDADIPMAILPKSGKIILLQLDGD---VSEQELEEAMEMMLGAMKNI 221 >UniRef50_A5VCY9 Polyribonucleotide nucleotidyltransferase n=438 Tax=cellular organisms RepID=PNP_SPHWW Length = 774 Score = 179 bits (454), Expect = 7e-44, Method: Composition-based stats. Identities = 55/235 (23%), Positives = 94/235 (40%), Gaps = 24/235 (10%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQG 57 R GR VRP+ ++ A GS L G+T+ + T ++ E + L G Sbjct: 314 RIDGRDTRTVRPIVAEAHFLPRAHGSALFTRGETQSISTCTLGTKESEQMIDGLNGLRYE 373 Query: 58 WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCD 117 Y P S G G R + +L RAL A + K +TI L D Sbjct: 374 HFMLHYNFPPYSVGEV----GRFGAPGRREVGHGKLAWRALHAVLPTKEEFPYTIRLTSD 429 Query: 118 VLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV----NGEAVC 173 + +++G + A++ G +A++DA P+K V+ +++G++ + + Sbjct: 430 ITESNGSSSMATVCGGSLAMMDA-----------GVPIKRPVSGIAMGLILEGKDFAVIS 478 Query: 174 DLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 D+ ED + D V T +G I +Q + T E L A+ + Sbjct: 479 DILGDEDHLGDMDFKVAGTSEG-ITTMQMDIKIAGITEEIFKTALLQAKEGRAHI 532 Score = 80.1 bits (196), Expect = 5e-14, Method: Composition-based stats. Identities = 46/219 (21%), Positives = 77/219 (35%), Gaps = 23/219 (10%) Query: 14 VTLTRN-YTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTHT 72 +TL + A+G+VL G+T VLC + V +T Y S+ Sbjct: 16 LTLETGRVARQADGAVLATLGETVVLCAVTAARSVKEGQDFFP---LTVHYQEKYFSSGR 72 Query: 73 RNARE-AAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRT--AS 129 + + + RLI R +R E I + VL DG + Sbjct: 73 IPGGFFKRERGATEKETLVSRLIDRPIRPLFPEGFYNE--INVIAQVLSYDGENEPDILA 130 Query: 130 ITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNV 189 + A AL + P G + A VG +GE + + + +A + D+ V Sbjct: 131 MIAASAAL-----------TISGVPFMGPIGAARVGYKDGEYLLNPTDADVAAGDLDLVV 179 Query: 190 VMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 T D + +E + + E +L + A S + Sbjct: 180 AATHD---AVMMVESEAKELSEEVMLGAVMFAHKASQDV 215 >UniRef50_Q1J1D0 Polyribonucleotide nucleotidyltransferase n=6 Tax=Deinococci RepID=PNP_DEIGD Length = 721 Score = 179 bits (454), Expect = 7e-44, Method: Composition-based stats. Identities = 55/236 (23%), Positives = 99/236 (41%), Gaps = 24/236 (10%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQ 56 +R GR++ VRP+ + A GS + G+T+VL ++ +E + L G+ Sbjct: 318 LRADGRNSKTVRPIWIEARPLPRAHGSAIFTRGETQVLGVTTLGTERDELLVDNLTGETN 377 Query: 57 GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 Y P ST G Q R + L RA+RA + + I + Sbjct: 378 DRFLLHYNFPPYSTGEVKR----VGGQSRREVGHGNLAKRAIRAVLPAFDDFPYVIRVVG 433 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV----NGEAV 172 +VL+++G + A++ ++L+DA P++ VA V++G+V + Sbjct: 434 EVLESNGSSSMATVCAGTLSLMDA-----------GVPIQAPVAGVAMGLVMEGEQYRIL 482 Query: 173 CDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 D+ +ED+ + D V T +G + +Q + T + LA AR + Sbjct: 483 TDILGLEDALGDMDFKVCGTAEG-VTALQMDIKVSGVTPAIMREALAQAREARLHI 537 Score = 65.8 bits (159), Expect = 9e-10, Method: Composition-based stats. Identities = 47/214 (21%), Positives = 76/214 (35%), Gaps = 24/214 (11%) Query: 12 RPVTLTRNYTKH-AEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRST 70 R +++ A GSV + +GDT +L TA E +T E+ + Sbjct: 13 RELSIETGKLAKLASGSVTLRYGDTLLLVTAQAREERSTLDFLP----LTVEFEERHYAV 68 Query: 71 HTRNAREAAK-GKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQAD--GGTRT 127 + G+ G + R+ R +R + VL AD Sbjct: 69 GRIPGSFHRREGRPGEHAILSARITDRQIRPLFP--KGYRQETQVIITVLSADQQNAPDV 126 Query: 128 ASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDM 187 GA AL L P G A V VG+++GE V + + + + D+ Sbjct: 127 LGAIGASAAL-----------SLSDIPWNGPTACVRVGMIDGEYVINPTSDQLTRSSLDL 175 Query: 188 NVVMTEDGRIIEVQGTAEGEPFTHEELLILLALA 221 V T D + V+ A+G + E L+ + A Sbjct: 176 VVAGTRD-AVNMVEAGAQG--VSEETLVGAIEFA 206 >UniRef50_B3QZG1 Polyribonucleotide nucleotidyltransferase n=1 Tax=Candidatus Phytoplasma mali AT RepID=PNP_PHYMT Length = 728 Score = 179 bits (454), Expect = 7e-44, Method: Composition-based stats. Identities = 46/240 (19%), Positives = 97/240 (40%), Gaps = 28/240 (11%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQ 56 +RP GR+++++R +T + GS L G T+ L ++ E + L + Sbjct: 337 IRPDGRNSSEIRSITSRIDILPRTHGSALFTRGGTQSLAIVTLGTLRESKIIDDLSDEVD 396 Query: 57 GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 Y + + R + L +AL + + ++I + Sbjct: 397 KRFMLHYNFPAFAVGSV----GRYLAPSRREIGHGMLAEKALECVLPSENDFPYSIRVVS 452 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV--------N 168 ++L ++G + A+I + +AL+ A P+K +VA V++G++ + Sbjct: 453 EILDSNGSSSQATICASSMALMSA-----------GVPLKSLVAGVAMGLIVDDIDKINH 501 Query: 169 GEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 + D+E +ED + D + T+ G I +Q + + T E +L A+ + + Sbjct: 502 YTILSDIEGLEDYQGDIDFKIAGTKVG-ITALQLDIKIKGITLEIFEKVLEQAKKDRIKI 560 Score = 57.0 bits (136), Expect = 5e-07, Method: Composition-based stats. Identities = 34/219 (15%), Positives = 68/219 (31%), Gaps = 24/219 (10%) Query: 14 VTLTRNYTKH-AEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTHT 72 + + A GSV++ + DT +L A + +T Y + Sbjct: 22 LRIEIGEISRQANGSVMLFYKDTVILSVAVCGDKKNSLNFLP----LTVNYQEKLYAAGK 77 Query: 73 RNAREAAK-GKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQAD--GGTRTAS 129 + GK + + RLI R +R + + L VL +D G Sbjct: 78 IPGGFLRREGKPSDQEILCSRLIDRTIRPL--FSKNFKNEVQLINMVLSSDPDGNNENI- 134 Query: 130 ITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNV 189 AL + P V++V VG + + + + + + + Sbjct: 135 ----------ALLGSSLALLISDIPFFEPVSSVCVGKIGDNLIINPTLSQRENSSFFLIL 184 Query: 190 VMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 T+D + V+ +++ + L + L Sbjct: 185 AGTKD-SLNMVEMSSKE--ISENNFLESIKFGHEIIKKL 220 >UniRef50_Q9NPD3 Exosome complex exonuclease RRP41 n=11 Tax=Coelomata RepID=EXOS4_HUMAN Length = 245 Score = 179 bits (454), Expect = 7e-44, Method: Composition-based stats. Identities = 54/230 (23%), Positives = 92/230 (40%), Gaps = 21/230 (9%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKG--QGQGWI 59 R GR ++R + A+GS +E G+TK L + + + Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 72 Query: 60 TAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVL 119 +Y ST R R ++ E+ + + AA+ + I + VL Sbjct: 73 NCQYSSATFSTGERKRRPHG----DRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVL 128 Query: 120 QADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVE 179 QADGGT A + A +A++DA PM+ V A S G V+G A+ DL +VE Sbjct: 129 QADGGTYAACVNAATLAVLDA-----------GIPMRDFVCACSAGFVDGTALADLSHVE 177 Query: 180 DSAAETDMNVV-MTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 ++A + + + G+I ++ A + L +L A + + Sbjct: 178 EAAGGPQLALALLPASGQIALLEMDAR---LHEDHLERVLEAAAQAARDV 224 >UniRef50_B2S4C3 Polyribonucleotide nucleotidyltransferase n=2 Tax=Treponema pallidum RepID=PNP_TREPS Length = 702 Score = 178 bits (452), Expect = 1e-43, Method: Composition-based stats. Identities = 46/236 (19%), Positives = 90/236 (38%), Gaps = 25/236 (10%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQ 56 +R GR+ + +RP+ GS + G+T+ L ++ + V ++G + Sbjct: 313 LRIDGRAIDAIRPIACEVGVLPRPHGSAVFTRGETQSLAVVTLGAMSDGQVYDDIEGDRR 372 Query: 57 GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 Y P S G R + L R+L A + +T+ + Sbjct: 373 ENFILHYNFPPFSVGEIGRMG-----VGRREIGHGCLAHRSLSAVIPDPEQFPYTVRVVS 427 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV----NGEAV 172 ++L+++G + A++ ++L+ A P+K VA +++G++ + Sbjct: 428 EILESNGSSSMATVCSGTLSLLHA-----------GVPIKKPVAGIAMGLITDGVRYAIL 476 Query: 173 CDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 D+ ED + D V T DG I Q + E + + L AR + Sbjct: 477 SDILGEEDHLGDMDFKVAGTCDG-ITGFQMDVKVEAVSASLMKEALQQARVGRLHI 531 Score = 73.9 bits (180), Expect = 4e-12, Method: Composition-based stats. Identities = 46/218 (21%), Positives = 76/218 (34%), Gaps = 19/218 (8%) Query: 13 PVTLTRNYT-KHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTH 71 P+ L Y + A GSV ++ T +L T L +T ++ + Sbjct: 13 PLLLESGYLARQANGSVYLQCEGTAILATVCSSAQRQEGLDYVP---LTVDFNEKYYAVG 69 Query: 72 TRNARE-AAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTASI 130 +G+ R + I RLI R +R + I + + +D + Sbjct: 70 KMPGGFIKREGRPKDREILISRLIDRPMRPL--FEKEFGRDIHVVPTCISSD-MVHPHDV 126 Query: 131 TGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNVV 190 + L P G VAAV V +NG V + + + AA ++ V Sbjct: 127 LAIVAS--------SAAVTLSDIPFHGPVAAVRVAYLNGSYVINPTFSQIDAASMEVVVA 178 Query: 191 MTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 T G I V+G A + + +L L A+ L Sbjct: 179 GTRQG-ITMVEGGARE--VSEDLMLGALEQAQEHIKAL 213 >UniRef50_D1B019 Polyribonucleotide nucleotidyltransferase n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1B019_SULD5 Length = 746 Score = 178 bits (452), Expect = 1e-43, Method: Composition-based stats. Identities = 55/238 (23%), Positives = 93/238 (39%), Gaps = 28/238 (11%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFL------KGQ 54 +R GR ++RP+++ N A GS L G T+ L A++ + K Sbjct: 343 VRADGRKLTEIRPISIETNLLPLAHGSCLFTRGQTQALVIATLGNDKDAQMYDLLTEKSS 402 Query: 55 GQGWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITL 114 Y S + G R + L RAL VD+ L TI L Sbjct: 403 VSDTFMVNYNFPGFSVGEASPLR----APGRRELGHGNLARRALEPVVDINRL--QTIRL 456 Query: 115 DCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV----NGE 170 ++L+++G + A+I G +AL A ++ +VA +++G+V Sbjct: 457 VSEILESNGSSSMATICGGALALKAA-----------GVEIEKLVAGIAMGLVFEGDKHA 505 Query: 171 AVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 + D+ +ED + D V T+DG I +Q + + + L L AR + Sbjct: 506 VLSDIMGLEDHDGDMDFKVAGTKDG-ITALQMDIKLGGISRDVLKEALYQAREGREHI 562 Score = 52.7 bits (125), Expect = 9e-06, Method: Composition-based stats. Identities = 39/185 (21%), Positives = 66/185 (35%), Gaps = 19/185 (10%) Query: 20 YTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTHTRNARE-A 78 K A G+ L++ +T +L T + ++ +T +Y + Sbjct: 19 VAKQAAGAALLKIKNTVILATVARDDTQVSENFVP----LTVQYVEKSYAVGKIPGGYIK 74 Query: 79 AKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTASITGACVAL- 137 + K G R+I R+LR IT+ VL D A V L Sbjct: 75 RETKPGDFETLTSRIIDRSLRPLFPKGYAYPTQITVF--VLSCD----------AEVDLQ 122 Query: 138 VDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRI 197 V AL L P+ VA V +G V+G V + + D+ V T++ + Sbjct: 123 VAALNAAGAALYLSDIPVNKAVAGVRIGYVDGAYVVNPSNSLLKKSTLDLYVAGTKE-EL 181 Query: 198 IEVQG 202 + ++ Sbjct: 182 LMIEM 186 >UniRef50_Q72ER6 Polyribonucleotide nucleotidyltransferase n=17 Tax=Deltaproteobacteria RepID=PNP_DESVH Length = 760 Score = 178 bits (452), Expect = 1e-43, Method: Composition-based stats. Identities = 51/235 (21%), Positives = 90/235 (38%), Gaps = 25/235 (10%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQG 57 R GR VRP+ + A GS L G+TK L A++ +E L G Sbjct: 322 RIDGRDTTTVRPILIEAGILPRAHGSALFARGETKSLVVATLGSSTDEQRMDSLTGDVTK 381 Query: 58 WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCD 117 Y P R + L +ALR + L FT+ + + Sbjct: 382 RFMLHYNFAPYCVGEVKPVR-----VSRREIGHGALAEKALRPILPLGEDFPFTLRVVAE 436 Query: 118 VLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVN----GEAVC 173 ++++G + A++ G C++L+DA P+ VA V++G++ + Sbjct: 437 TMESNGSSSMAAVCGGCLSLMDA-----------GVPITAPVAGVAMGLIKEGDQYVVLT 485 Query: 174 DLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 D+ ED+ + D + T +G I VQ + + + + + AR + Sbjct: 486 DILGDEDALGDMDFKIAGTSEG-ITAVQMDIKVKGLPTDVMARAMQQARDARLHI 539 Score = 68.9 bits (167), Expect = 1e-10, Method: Composition-based stats. Identities = 40/212 (18%), Positives = 74/212 (34%), Gaps = 25/212 (11%) Query: 13 PVTLTRNYT-KHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTH 71 + A+G+V ++ G T VL TA + +T EY + Sbjct: 18 EIVFETGRLANQADGAVWIQCGGTVVLVTACSQATDRDLGFFP----LTVEYSEKMYAAG 73 Query: 72 TRNAR--EAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGG--TRT 127 G+ R + RLI R +R + + + +V+ +D + Sbjct: 74 RIPGSFFRREIGRPSERETLVSRLIDRPIRPLFPKGL--KDEVQVLANVISSDQNNDSDV 131 Query: 128 ASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDM 187 ++TGA AL L + P G VA +G ++G+ V + E +D+ Sbjct: 132 LAVTGASTAL-----------GLSSIPFDGPVAGARIGRIDGQFVINPTIKE--MERSDL 178 Query: 188 NVVMTEDGRIIEVQGTAEGEPFTHEELLILLA 219 N+V+ + + E ++ L Sbjct: 179 NIVLAASRDAVVMV-EGEASFVPEAVIVEALE 209 >UniRef50_A7RQ94 Predicted protein n=3 Tax=Eumetazoa RepID=A7RQ94_NEMVE Length = 268 Score = 178 bits (451), Expect = 1e-43, Method: Composition-based stats. Identities = 51/230 (22%), Positives = 86/230 (37%), Gaps = 22/230 (9%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR +++RP+ L A+GS +E +TKV+C PR + +G +T Sbjct: 36 RQDGRRPDELRPMFLRAGVVSQAKGSAYIEMKNTKVICAIYGPREAPRRQEFSMKGRLTC 95 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQA 121 E+ P S R K Q E L+ +AL AV L+ + + + VL+ Sbjct: 96 EFKFAPFSCIYRR-----KHIQDAEEKENSYLVVQALEPAVCLEKFPKAQVDIYITVLEN 150 Query: 122 DGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDS 181 DG +A I A VAL A M +V+A ++ + + D E Sbjct: 151 DGSALSAGIICASVALAMA-----------GIEMLDLVSACTMVQSDNHILMDPCEKEIH 199 Query: 182 AAETD---MNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 ++ M ++ + + E T + L+ + Sbjct: 200 SSSASGHTMVAILPSLNVVSGLVQEGE---LTQDAATKALSSCIEGCARI 246 >UniRef50_C1CZJ0 Putative tRNA nucleotidyltransferase (Phosphate-dependent exonuclease, Ribonuclease PH, RNase PH) n=1 Tax=Deinococcus deserti VCD115 RepID=C1CZJ0_DEIDV Length = 249 Score = 177 bits (449), Expect = 2e-43, Method: Composition-based stats. Identities = 100/220 (45%), Positives = 132/220 (60%), Gaps = 2/220 (0%) Query: 5 GRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYG 64 GR + RPV++ R HA GS + G T++L T ++E+ ++G+ +GW+TAEY Sbjct: 14 GRGLLEPRPVSVKRGVNPHAPGSAHLIMGRTEILATVTLEDKPAPHMRGKKEGWLTAEYS 73 Query: 65 MLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGG 124 MLPR+T+ R AR + Q GR EIQRL+ RALRA+VDLK TI +DCDVL ADGG Sbjct: 74 MLPRATNDRQAR--ERNLQNGRRHEIQRLLGRALRASVDLKYFRNQTIYVDCDVLVADGG 131 Query: 125 TRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAE 184 TR ASI AL D +L+ +G+L P+ V A+SVG+V E DL+Y ED A Sbjct: 132 TRVASILAGHAALHDFCDRLINSGQLSEWPLTHKVGAISVGLVGEEVRVDLDYAEDKVAR 191 Query: 185 TDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGE 224 D+NVV T+ G +IEVQG AE P + E LL Sbjct: 192 ADLNVVATDTGLVIEVQGGAEEGPISLAEYSQLLHTGVQA 231 >UniRef50_C1XM20 Ribonuclease PH n=2 Tax=Meiothermus RepID=C1XM20_MEIRU Length = 238 Score = 177 bits (449), Expect = 2e-43, Method: Composition-based stats. Identities = 97/227 (42%), Positives = 127/227 (55%), Gaps = 3/227 (1%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR+ ++RP+TL Y +AEGS LVE G TKVL S+ +GVPR + G +GW+ A Sbjct: 3 RKDGRAAQELRPLTLRMGYVHYAEGSALVELGHTKVLVNVSLTDGVPRHVSG-REGWLMA 61 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQA 121 EY +LPRST R R + K GRT EIQR + RA RAA+DL L T+ +D DV+QA Sbjct: 62 EYNLLPRSTKERKER--ERQKISGRTAEIQRFLGRAFRAALDLSLLPNKTVVIDADVIQA 119 Query: 122 DGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDS 181 DGGTR AS+ G AL A+ +LV GKL P+ A + + + DL +ED Sbjct: 120 DGGTRVASLLGGYAALHMAMDRLVNQGKLDEWPLTEFAAVSVGWMSDDSLLLDLTQIEDE 179 Query: 182 AAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 A D+ VV T+ G IIE+ G EG P +L + L Sbjct: 180 NAWADLTVVATQSGDIIELHGAGEGRPVPRSTYQAMLEMGLAHIPEL 226 >UniRef50_Q6MDI2 Polyribonucleotide nucleotidyltransferase n=17 Tax=Chlamydiales RepID=PNP_PARUW Length = 697 Score = 177 bits (449), Expect = 3e-43, Method: Composition-based stats. Identities = 52/236 (22%), Positives = 99/236 (41%), Gaps = 24/236 (10%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQG--- 57 +R GR++ +R + + ++ A GS L G+T+ L ++ +G Sbjct: 315 VRSDGRTSTDIRFIDIEQSLLPRAHGSSLFTRGETQALAVCTLGGASMAQRFEDLEGEGN 374 Query: 58 -WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 +Y P S G G R + +L RAL A + K +TI L+ Sbjct: 375 NRFYLQYSFPPYSVGEV----GRVGAPGRREIGHGKLAERALMAVIPTKEQFPYTIRLES 430 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNG----EAV 172 ++ +++G + A++ G C+AL+DA +K VA +++G++ + Sbjct: 431 NITESNGSSSMATVCGGCLALMDA-----------GVAIKRPVAGIAMGLILENERFIIL 479 Query: 173 CDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 D+ +ED+ + D V ++G I Q + E T E + + L A+ + Sbjct: 480 SDILGIEDALGDMDFKVTGDQNG-ITAFQMDIKVEGITIEIMRVALKQAKEGRVHI 534 Score = 76.6 bits (187), Expect = 6e-13, Method: Composition-based stats. Identities = 38/220 (17%), Positives = 77/220 (35%), Gaps = 23/220 (10%) Query: 13 PVTLTRN-YTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEY-GMLPRST 70 + + A G+V+V G+T V TA P + +Y + Sbjct: 14 EIIFETGKIARQAGGAVVVRCGETVVFTTACA---APNADSTTDFLPLRVDYQEKFSSAG 70 Query: 71 HTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADG--GTRTA 128 T +G+ + + + RLI R +R + + L V DG Sbjct: 71 KTLGGFIKREGRPTEKEVLVSRLIDRPIRP--MFEEGYYNEVQLLSFVWSYDGINSPEPL 128 Query: 129 SITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMN 188 +I GA ALV + P+ V AV +G ++ + + + + ++ D+ Sbjct: 129 AICGASAALV-----------ISDIPLIKPVGAVRIGFIDAQFIVNPTIEQQKQSKLDLL 177 Query: 189 VVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 + TE+ + + T +++L + + + Sbjct: 178 IAGTEE---AVLMIEGFCDFLTEDQVLEAIEIGHRSIKTI 214 >UniRef50_Q7U9I1 Ribonuclease PH n=14 Tax=Cyanobacteria RepID=RNPH_SYNPX Length = 249 Score = 177 bits (448), Expect = 3e-43, Method: Composition-based stats. Identities = 112/227 (49%), Positives = 150/227 (66%), Gaps = 2/227 (0%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR ++RP ++ + A S++V G T VLC+ S+EE VPR+ +G G GW++A Sbjct: 8 RADGRGATELRPFSVDWDPMSFALSSLIVRTGRTAVLCSVSLEEDVPRWRRGNGCGWLSA 67 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQA 121 EY +LP ST R +RE K GRT EIQRLI R+LRA +D+ ALGE T+ +DCDV+QA Sbjct: 68 EYRLLPGSTPQRQSRELM--KLSGRTQEIQRLIGRSLRAVLDMDALGERTLLIDCDVIQA 125 Query: 122 DGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDS 181 D GTRTASITGA +AL A L G L +P++ +AAVSVG+++G + DL+Y EDS Sbjct: 126 DAGTRTASITGAWIALRRACDLLRSQGVLTQDPIRQQLAAVSVGLIDGTPLLDLDYSEDS 185 Query: 182 AAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 A+ D+NVV DGR++E+QGTAE PF+ EL +L LA L Sbjct: 186 RADVDLNVVTAGDGRLLELQGTAEQAPFSRSELDAMLNLAESGLQEL 232 >UniRef50_A7I002 Polyribonucleotide nucleotidyltransferase n=2 Tax=Campylobacter RepID=PNP_CAMHC Length = 711 Score = 177 bits (448), Expect = 3e-43, Method: Composition-based stats. Identities = 48/237 (20%), Positives = 89/237 (37%), Gaps = 28/237 (11%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRF------LKGQG 55 R GR+ +++RP+++ N +A GS L G T+ L ++ Sbjct: 323 RADGRALDEIRPISIETNILPNAHGSCLFTRGQTQALVVTTLGGETDAQVSDSLTSNTPI 382 Query: 56 QGWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLD 115 +Y + ++ G R + L RAL +V L I Sbjct: 383 SERFMFQYNFPGFCVGEASPLKS----PGRRELGHGNLAKRALTPSVPLNN--PQVIRTV 436 Query: 116 CDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV----NGEA 171 ++L+++G + AS+ G ++L A +VA V++G++ Sbjct: 437 SEILESNGSSSMASVCGGSLSLRAA-----------GVSTLKLVAGVAMGLIFEDDKHAI 485 Query: 172 VCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 + D+ +ED + D V T +G I +Q + + E L L A+ N + Sbjct: 486 LTDIMGLEDHDGDMDFKVAGTREG-ITALQMDIKLGGISLEILREALNQAKDGRNYI 541 Score = 75.4 bits (184), Expect = 1e-12, Method: Composition-based stats. Identities = 44/216 (20%), Positives = 69/216 (31%), Gaps = 28/216 (12%) Query: 20 YTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTHTRNARE-A 78 K A G+ L++ +T VL T + E +T +Y + Sbjct: 19 VAKQAAGACLMKVKNTVVLATVARENTQVEEDFLP----LTVQYIEKQYAAGRIPGGYIK 74 Query: 79 AKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGG--TRTASITGACVA 136 + K G R+I R+LR I VL AD + + A VA Sbjct: 75 RETKPGDFETLTSRIIDRSLRPLFPKGYAYPTQI--VVFVLSADPEIDLQVVGLNAASVA 132 Query: 137 LVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNVVMTEDGR 196 L L PMK V V VG +N V + E + D+ V +D Sbjct: 133 LY-----------LSDIPMKAPVCGVRVGYINDSFVINPTNSELQNSALDLYVAGVKDEM 181 Query: 197 I-----IEVQGTAEG---EPFTHEELLILLALARGE 224 + E F+ ++++ + A Sbjct: 182 LMIEMRSLPNMNGENQNMNEFSEDKMVEAIDFASKA 217 >UniRef50_Q2GEY8 Polyribonucleotide nucleotidyltransferase n=2 Tax=Neorickettsia RepID=PNP_NEOSM Length = 757 Score = 176 bits (447), Expect = 4e-43, Method: Composition-based stats. Identities = 53/236 (22%), Positives = 103/236 (43%), Gaps = 24/236 (10%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQ 56 +RP GRS ++RP+++ +Y GS L G T+ L A++ +E V + G+ + Sbjct: 317 IRPDGRSLTEIRPISIALDYLPGTHGSALFTRGGTQSLVVATLGSYQDEQVMDDIDGERR 376 Query: 57 GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 + Y LP + A G R + RL +A++A + K + +T+ L Sbjct: 377 ESVLLHYNFLPYAVGEV----GALRAPGRREIGHGRLALKAVKAVLPGKEVFPYTLRLVS 432 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNG----EAV 172 ++ ++DG + A++ G+ +AL+D P+ VA +++G++ + Sbjct: 433 EITESDGSSSMATVCGSSLALMDT-----------GVPITKHVAGIAMGLITDGVRSAVL 481 Query: 173 CDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 D+ ED + D V T +G I+ +Q + + + L A + Sbjct: 482 SDISGDEDMLGDMDFKVAGTRNG-IVALQMDMKVRGISIATIRDALNQALAGRLHI 536 Score = 54.6 bits (130), Expect = 2e-06, Method: Composition-based stats. Identities = 25/158 (15%), Positives = 51/158 (32%), Gaps = 11/158 (6%) Query: 13 PVTLTRN-YTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTH 71 + + + A G+ V +G T VL ++++ K + L +S Sbjct: 15 SLHIKTGEVARQAAGAACVSYGGTVVLAVVTLQKDTAASKKTSDLSGLALVTNFLAKSYA 74 Query: 72 TRNAREA---AKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTA 128 +GK R + R++ RA+R + + + + C +L G + Sbjct: 75 LGRIPNGFFKREGKLSEREVLASRVVDRAVRPLI--EENLVNEVNIVCKLLAH-GNRKVL 131 Query: 129 ----SITGACVALVDALQKLVENGKLKTNPMKGMVAAV 162 ++ A AL + M+G Sbjct: 132 PEIPALIAASAALQLSGIPFSGPVIGVDVDMRGSEVTC 169 >UniRef50_B6K3J3 Exosome complex exonuclease RRP41 n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6K3J3_SCHJY Length = 243 Score = 176 bits (446), Expect = 5e-43, Method: Composition-based stats. Identities = 51/229 (22%), Positives = 86/229 (37%), Gaps = 19/229 (8%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIE-EGVPRFLKGQGQGWI 59 +R GR N++R K A GS ++ G+T+VLC + E + Q + +I Sbjct: 13 LRQDGRRWNEMREFDCRIGVEKTAHGSSFIQHGNTRVLCNVNGPSEPYIKGKSKQEKAFI 72 Query: 60 TAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVL 119 E P S R R + R E I R A+ ++ + I++ +VL Sbjct: 73 NVELNFAPFSLIDRKKR----HRSDKRIQEQCVAIQRTFEQAIQVELYPKSQISISLNVL 128 Query: 120 QADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVE 179 + DGG I A +AL+DA M V + GI + + DL E Sbjct: 129 EDDGGAIATCINAATLALIDA-----------GIAMVDYVCCATAGIYETQVLLDLNTNE 177 Query: 180 DSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 +S V+ G++ ++ + + L A + + Sbjct: 178 ESDISWMTVGVLGTKGKVTYLKQ---ETKLSLDLFEPALTTAIAGCDHI 223 >UniRef50_B7G0I4 Predicted protein n=2 Tax=Bacillariophyta RepID=B7G0I4_PHATR Length = 830 Score = 176 bits (446), Expect = 5e-43, Method: Composition-based stats. Identities = 54/242 (22%), Positives = 89/242 (36%), Gaps = 30/242 (12%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIE----EGVPRFLKGQGQ 56 +R GR +R +T+ GS L G+T+ + T ++ L G + Sbjct: 389 LRCDGRGPTDIRQLTMETGLLPRVHGSALFTRGETQCVATTTLGGSGMRQKIEKLDGTDE 448 Query: 57 GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 +Y P G G R + L RAL + A +TI ++ Sbjct: 449 KRFYLQYTFPPSCVGE----TGRVGAPGRREVGHGNLAERALIPTIPALADFPYTIRVES 504 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGE------ 170 + ++ G + AS+ G +AL+DA P+K VA +++G++ G+ Sbjct: 505 LITESHGSSSMASVCGGSLALMDA-----------GVPIKAPVAGIAMGMLLGDKGGVSD 553 Query: 171 ----AVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESN 226 + D+ ED+ D V G I Q + E T E + L AR Sbjct: 554 ENAVILSDILGTEDALGTMDFKVAGDRVG-ISTFQLDIKCEGLTLETMESALEQARTGRL 612 Query: 227 PL 228 L Sbjct: 613 HL 614 >UniRef50_C2D8L5 tRNA nucleotidyltransferase n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D8L5_9ACTN Length = 272 Score = 176 bits (446), Expect = 6e-43, Method: Composition-based stats. Identities = 117/227 (51%), Positives = 153/227 (67%), Gaps = 2/227 (0%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GRS + RP TL R K+A+GS L+ GDT+VLC+A++E+ +P + K GW++A Sbjct: 38 RSYGRSAFEARPCTLERQVMKYADGSCLITCGDTRVLCSATVEDTLPTWRKLSHLGWVSA 97 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQA 121 EY MLP S R RE K GR+MEI+RLI R+LR+ VD LGE TIT+DCDVLQA Sbjct: 98 EYAMLPASAKRRTPREYKGRK--GRSMEIERLIGRSLRSVVDFSKLGEHTITIDCDVLQA 155 Query: 122 DGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDS 181 DGGTRTASI GA VAL DA +K+VE K+ P+ G VAA+S+GIV+GE + DL+Y EDS Sbjct: 156 DGGTRTASIVGAWVALHDACRKMVEADKIARCPLTGQVAAISMGIVHGELLVDLDYPEDS 215 Query: 182 AAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 A+ D+NVVM +DG ++E+QGT E + +L LL + L Sbjct: 216 NADVDLNVVMRDDGGLVEIQGTGERATLSRHDLNALLDASEPALTKL 262 >UniRef50_C3N5R4 Probable exosome complex exonuclease 2 n=12 Tax=Sulfolobaceae RepID=ECX2_SULIA Length = 275 Score = 175 bits (445), Expect = 8e-43, Method: Composition-based stats. Identities = 58/245 (23%), Positives = 97/245 (39%), Gaps = 25/245 (10%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR RP+++T +Y K A+GS LV+ G T VL +E P + QG + Sbjct: 28 RQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKP-YEDTPNQGNLIV 86 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALR--------AAVDLKALGEFTIT 113 +LP + T G +E+ R++ R+LR V +T+ Sbjct: 87 NVELLPLAYETFEP-----GPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVW 141 Query: 114 LDCDVLQADGGTRTASITGACVALVDALQKLVENGKL----------KTNPMKGMVAAVS 163 LD VL G A + AL + VE P+ V VS Sbjct: 142 LDVYVLDYGGNVLDACTLASVAALHNTKVYKVEQDSNGFRVNKNEVVGKLPLNHPVVTVS 201 Query: 164 VGIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARG 223 + V+ + D + E+S +T ++ T D +I+ +Q + + + +++ AR Sbjct: 202 IAKVDKYLIVDPDLDEESIMDTKVSFSYTPDLKIVGIQKSGK-GSMSLQDIDQAENTARL 260 Query: 224 ESNPL 228 + L Sbjct: 261 VAVKL 265 >UniRef50_Q1G2Y1 Chloroplast polyribonucleotide phosphorylase n=5 Tax=cellular organisms RepID=Q1G2Y1_CHLRE Length = 854 Score = 175 bits (445), Expect = 8e-43, Method: Composition-based stats. Identities = 51/242 (21%), Positives = 91/242 (37%), Gaps = 30/242 (12%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI---------EEGVPRFL 51 +R GR +RPVT GS L G+T+ +C A++ + Sbjct: 415 VRADGRGVADIRPVTCRAGLLPRTHGSALFTRGETQSICVATLGSANDALRSDTMRKPDG 474 Query: 52 KGQGQGWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFT 111 + G +Y P S G G R + L RAL + A +T Sbjct: 475 EDPESGRFYLQYHFPPSSVGE----TGRTGAPGRRELGHGELAQRALAPILPDPAQFPYT 530 Query: 112 ITLDCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV---- 167 + ++ + +++G + AS+ G C+A++DA P+ VA +++G++ Sbjct: 531 VRVESTITESNGSSSMASVCGGCLAMMDA-----------GVPIARPVAGIAMGLILESN 579 Query: 168 -NGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESN 226 + D+ ED+ + D V D I Q + E T + + L A+ Sbjct: 580 GRNAVLSDILGSEDALGDMDFKVAGDHD-AITAFQMDIKVEGITLDIMAKALQQAKAGRR 638 Query: 227 PL 228 + Sbjct: 639 HI 640 >UniRef50_Q8SYC8 RE67757p n=23 Tax=Coelomata RepID=Q8SYC8_DROME Length = 246 Score = 175 bits (443), Expect = 1e-42, Method: Composition-based stats. Identities = 44/230 (19%), Positives = 87/230 (37%), Gaps = 23/230 (10%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +R GR +++R + + +GS +E G+TKVL Q + I Sbjct: 13 LRLDGRRPHELRRIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQ---AKGNQTESVIN 69 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 +Y ST R R +++E + + +AL AA+ + I + +VLQ Sbjct: 70 CQYSQATFSTAERKNRPRG----DRKSLEFKLYLQQALSAAIKSELYPRSQIDIYVEVLQ 125 Query: 121 ADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVN-GEAVCDLEYVE 179 DG ++ A +AL+DA + + A + + + D+ E Sbjct: 126 DDGANYAVALNAATLALIDA-----------GICLNEFIVACTASLSKSNIPLTDISQFE 174 Query: 180 DSAAETDMNV-VMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 + + + V + +I ++ + E F + L ++ A + Sbjct: 175 EVSGGPKLTVAALPTAEKIAFLEMS---ERFHIDHLGTVIETAMAGCREI 221 >UniRef50_A7GX79 Polyribonucleotide nucleotidyltransferase n=17 Tax=Epsilonproteobacteria RepID=PNP_CAMC5 Length = 735 Score = 174 bits (442), Expect = 1e-42, Method: Composition-based stats. Identities = 52/238 (21%), Positives = 98/238 (41%), Gaps = 28/238 (11%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI--EEGVPRFLKGQGQ-- 56 +R GR+ ++VRP+++ N +A GS L G T+ L A++ + + + Sbjct: 343 VRADGRALDEVRPISIETNVLPNAHGSCLFTRGQTQALVVATLGTDGDAQMYDILTEKTA 402 Query: 57 --GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITL 114 Y S + + G R + L RAL ++D+ + +TI L Sbjct: 403 LIEKFMFNYNFPGFSVGEASPLK----APGRRELGHGNLAKRALAPSIDINS--PYTIRL 456 Query: 115 DCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV----NGE 170 ++L+++G + AS+ G +AL A + +VA V++G++ Sbjct: 457 VSEILESNGSSSMASVCGGALALRAA-----------GVDTQKLVAGVAMGLIFEGDKHA 505 Query: 171 AVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 + D+ +ED + D V + DG I +Q + + E L L A+ + Sbjct: 506 VLTDIMGLEDHDGDMDFKVAGSSDG-ITALQMDIKLGGISLEVLKEALYQAKRGREHI 562 Score = 68.1 bits (165), Expect = 2e-10, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 66/186 (35%), Gaps = 21/186 (11%) Query: 20 YTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTHTRNARE-A 78 K A G+V++ +T VL T + ++ +T +Y + Sbjct: 19 VAKQAAGAVMLRVKNTVVLATVARDDVQVEEDFLP----LTVQYIEKAYAAGRIPGGYVK 74 Query: 79 AKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGG--TRTASITGACVA 136 + K G R+I R+LR I VL AD + + A VA Sbjct: 75 RETKPGDFETLTARIIDRSLRPLFPKGYAYPTQI--VVMVLSADPEVDLQVVGLNAASVA 132 Query: 137 LVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNVVMTEDGR 196 L L P+ V V VG ++ + V + E ++ D+ V T+D Sbjct: 133 LY-----------LSDIPVNRPVCGVRVGYIDDKFVINPSNSELKSSALDLYVAGTKD-E 180 Query: 197 IIEVQG 202 ++ ++ Sbjct: 181 LLMIEM 186 >UniRef50_B0BXR0 Polyribonucleotide nucleotidyltransferase n=20 Tax=Alphaproteobacteria RepID=PNP_RICRO Length = 748 Score = 174 bits (441), Expect = 2e-42, Method: Composition-based stats. Identities = 48/235 (20%), Positives = 94/235 (40%), Gaps = 24/235 (10%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTAS----IEEGVPRFLKGQGQG 57 R GRS +R + A GS L G+T+ L + + ++E + L+G+ + Sbjct: 316 RIDGRSTTDIRQIACEIGLLPSAHGSALFTRGETQSLVSTTFGTSLDEQIVDSLEGEYKE 375 Query: 58 WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCD 117 Y P S + + R + +L RA+ + K ++I + + Sbjct: 376 RFMLNYIFPPYSVNEAMPMK----APSRREVGHGKLAWRAINPILPNKVQFPYSIRVVAE 431 Query: 118 VLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNG----EAVC 173 +++G + A++ G+ +AL+ A P+K VA +++G+V + Sbjct: 432 TTESNGSSSMATVCGSSLALMYA-----------GVPIKAPVAGIAMGLVKEGKNFAVLS 480 Query: 174 DLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 D+ ED + D V T +G I +Q + + + + L AR + Sbjct: 481 DILGDEDYFGDMDFKVAGTGEG-ITALQMDIKISGVDFKIMKVALEQARLGRLHI 534 Score = 72.0 bits (175), Expect = 2e-11, Method: Composition-based stats. Identities = 50/210 (23%), Positives = 83/210 (39%), Gaps = 23/210 (10%) Query: 14 VTLTRN-YTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTHT 72 + L+ + A+G+V V+ G++ +LCTA + +G G +T Y + + Sbjct: 16 LELSTGKIARQADGAVTVKMGNSVLLCTA---VVANKAKEGIGFLPLTINYREMAYAAGK 72 Query: 73 RNAREAA-KGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRT--AS 129 +GK R + + RLI R +R + C VL D T + Sbjct: 73 IPGGFFKHEGKPSDREVLVSRLIDRPIRPL--FHPAFVNETHVTCSVLSYDPETPVDILA 130 Query: 130 ITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNV 189 I GA AL L P +VAA VG++NGE V + ++ D+ V Sbjct: 131 IIGASAAL-----------SLSPAPYLEIVAASKVGLINGEFVLNPTLALLKTSQLDLVV 179 Query: 190 VMTEDGRIIEVQGTAEGEPFTHEELLILLA 219 T D + +E + E++L + Sbjct: 180 AGTSDS---VMMVESEAHLLSEEQMLEAVK 206 >UniRef50_C4R4E4 3'-to-5' phosphorolytic exoribonuclease that is a subunit of the exosome n=1 Tax=Pichia pastoris GS115 RepID=C4R4E4_PICPG Length = 246 Score = 173 bits (439), Expect = 4e-42, Method: Composition-based stats. Identities = 50/229 (21%), Positives = 87/229 (37%), Gaps = 19/229 (8%) Query: 1 MRPAGRSNNQVRPVTLTRNYTK-HAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWI 59 +R GR N++R N A+GS VE G+TK++C + R +G + Sbjct: 9 LRVDGRRWNELRRFYCRINTHPIVADGSAYVEAGNTKIVCLLNGPHEPTRSQMNTQKGSL 68 Query: 60 TAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVL 119 + + P ST R + R E+ ++ V LK I ++ VL Sbjct: 69 DIKLHVSPFSTTERRKVT----RNDRRIQELSTILKNTFEQVVILKNYPRTIIEVNVRVL 124 Query: 120 QADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVE 179 DGG A +ALVDA + ++AVS G+ + + + DL +E Sbjct: 125 AQDGGLLAACCNAITLALVDA-----------GIALYDYISAVSAGVFDNQILLDLNRLE 173 Query: 180 DSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 + + V+ + ++ V + L + +A + L Sbjct: 174 EQDLSSVTIGVVGKTKKLSLVL---SETRLPQDRLAKVFEVAVNGCHQL 219 >UniRef50_A9FGR1 Ribonuclease PH n=2 Tax=Bacteria RepID=A9FGR1_SORC5 Length = 257 Score = 173 bits (438), Expect = 4e-42, Method: Composition-based stats. Identities = 119/228 (52%), Positives = 145/228 (63%), Gaps = 1/228 (0%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 RP GR+ + RPV + + ++AEGSVL G T VLCTAS+E VP ++ G+G GW+TA Sbjct: 3 RPDGRALDVHRPVEMILGFHRNAEGSVLYRAGRTVVLCTASVEPTVPAWMMGKGAGWLTA 62 Query: 62 EYGMLPRSTHTRNAREAAKGK-QGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 EY M PRS+ R +GK GRT EIQRLI RALRAA+DLK LGE TI +DCDVL+ Sbjct: 63 EYQMHPRSSPARREPRDGRGKAPSGRTQEIQRLIGRALRAAIDLKHLGEQTIAIDCDVLE 122 Query: 121 ADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVED 180 ADGGTRTASIT VAL AL ++ G L+ ++ VAA+SVG + G DL Y ED Sbjct: 123 ADGGTRTASITAGFVALALALDRMRAAGSLEAPVLRDQVAAISVGHLPGGLALDLVYTED 182 Query: 181 SAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 S+A DMNVV T G I+EVQ TAE E EL + LA L Sbjct: 183 SSARVDMNVVATAVGSIVEVQATAEDEAIPRAELDRMTDLALAGVASL 230 >UniRef50_B1L6N6 3' exoribonuclease n=1 Tax=Candidatus Korarchaeum cryptofilum OPF8 RepID=B1L6N6_KORCO Length = 268 Score = 173 bits (438), Expect = 5e-42, Method: Composition-based stats. Identities = 57/244 (23%), Positives = 101/244 (41%), Gaps = 25/244 (10%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR ++ RP+ + AEG ++ G+T+VL + G P F +G + Sbjct: 25 RVDGRGLHEYRPIEVLNGTFTKAEGEAWLKLGETQVLVGVKADLGEP-FPDTPDKGVFVS 83 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAA--------VDLKALGEFTIT 113 +LP ++ T G +E+ R++ RA+R+A V L + I Sbjct: 84 NAELLPVASPTFEP-----GPPDEGAIELARVVDRAIRSADAIDLGSLVILPGKLVYMIF 138 Query: 114 LDCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTN---------PMKGMVAAVSV 164 LD VL DG + + +AL + VE + +K + S Sbjct: 139 LDMYVLDYDGNLEDSLTLASLIALGRSEIPEVELKENGEIEVKESKRKLELKDIPINFSF 198 Query: 165 GIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGE 224 + + + D E+S ++ + V + +DG++ VQ FT EE+L ++ +AR + Sbjct: 199 VKIGSKILLDPTLEEESVSDASITVAINKDGKVCSVQK--RHGTFTVEEILNIVNVARSK 256 Query: 225 SNPL 228 L Sbjct: 257 WPEL 260 >UniRef50_A8NCK3 Putative uncharacterized protein n=2 Tax=Agaricales RepID=A8NCK3_COPC7 Length = 274 Score = 173 bits (438), Expect = 5e-42, Method: Composition-based stats. Identities = 52/229 (22%), Positives = 83/229 (36%), Gaps = 19/229 (8%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLK-GQGQGWI 59 R GR ++R +++ + A+GS L+ G T+VL + + I Sbjct: 27 FRSDGRRQYELRDLSIDLSRHGEADGSALISHGLTQVLVSVHGPREAKMRSHTFHDRANI 86 Query: 60 TAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVL 119 E + ST R R R +E I V I + +L Sbjct: 87 NVEVTVASFSTGERRKRLKG----DKRILEFAATIKSTFEPVVRTSLYPRSQIDIYIQIL 142 Query: 120 QADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVE 179 Q DGGT I G +AL++A PM V A+S G+ + + DL +E Sbjct: 143 QQDGGTLQTCINGTTLALINA-----------GIPMSDFVCAISGGVHSTSPMLDLTTLE 191 Query: 180 DSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 ++ VM + +++ V E +L LAR + L Sbjct: 192 ENDVPHVTVAVMPKSKKVVLVTM---ETRLHVERFEEVLCLARDAAAVL 237 >UniRef50_UPI000038E13A exosome complex exonuclease Rrp41 n=1 Tax=Ferroplasma acidarmanus fer1 RepID=UPI000038E13A Length = 240 Score = 172 bits (437), Expect = 6e-42, Method: Composition-based stats. Identities = 61/225 (27%), Positives = 106/225 (47%), Gaps = 20/225 (8%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +R GRS N++RP+ + + A+GS +E+G K++ + E P+ + + + Sbjct: 13 LRLDGRSLNEMRPIKIQTGVVERADGSAFIEWGANKIIVAVYVREAYPKHAQNIDRAIVK 72 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 A Y M S R RTMEI ++++ AL +A+ L+ L I + VL+ Sbjct: 73 ARYNMSGYSVEERKRPG-----PDRRTMEISKVVSEALSSAIVLEKLPRAEIDVFIQVLE 127 Query: 121 ADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVED 180 AD GTR AS+T + VA+ DA PM+ +V + G +G+ V DL ED Sbjct: 128 ADAGTRIASLTASSVAVADA-----------GVPMRDLVVGCTAGKADGKIVLDLSKDED 176 Query: 181 SAAETDM-NVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGE 224 + + D+ ++ G+++ +Q + T EE ++ Sbjct: 177 NFGQADIPMAILPRTGKVVLLQLDGD---VTEEEFNEATSMMMDA 218 >UniRef50_D2EG59 3' exoribonuclease n=1 Tax=Candidatus Parvarchaeum acidiphilum ARMAN-4 RepID=D2EG59_9EURY Length = 235 Score = 172 bits (437), Expect = 6e-42, Method: Composition-based stats. Identities = 60/232 (25%), Positives = 100/232 (43%), Gaps = 24/232 (10%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGV-PRFLKGQGQGWIT 60 R R +++RP+ +A+GS + G+T+ + E V PR ++ +G I Sbjct: 5 RFDKRKFDELRPMEAETGIIPNAKGSARFKIGNTEAIAAVYGPEEVKPRHIEKVNKGIIV 64 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 +Y MLP S R R +EI ++I AL AV L+ + + + + Q Sbjct: 65 CKYDMLPFSVPDRARPG-----MDRRDIEISQVITNALNRAVILEEMPRAMVNVRIYITQ 119 Query: 121 ADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVED 180 AD GTR AS+T A +A DA PM+ +VAAV+ G + DL E+ Sbjct: 120 ADAGTRCASLTAASMACADA-----------GLPMRDLVAAVAAGKIGDSICLDLTKEEE 168 Query: 181 SAAETDMN----VVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 E ++ I+ +Q + T EEL ++ + + + + Sbjct: 169 DFHEGGATDVPIALLPSKNEIVLLQLDGK---VTREELKKVIEMGKKGAMEI 217 >UniRef50_Q17533 Putative exosome complex exonuclease RRP41 n=4 Tax=root RepID=EXOS4_CAEEL Length = 240 Score = 172 bits (437), Expect = 6e-42, Method: Composition-based stats. Identities = 52/229 (22%), Positives = 94/229 (41%), Gaps = 19/229 (8%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 R GR Q+R + ++AEGS +E G+TKVLC + + + I Sbjct: 9 FRIDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAVYGPYEGKSSKRIEDKCAIV 68 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 +Y S R R ++ EI RL+ +A + + +A + + C+V+Q Sbjct: 69 CQYSATKFSGLERKNRTRG----DRKSTEISRLLEKAFESVILTEAFPRSQLDIFCEVIQ 124 Query: 121 ADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVED 180 DG A + +AL DA PMKG+ +A + G+V+G+ + DL E+ Sbjct: 125 GDGSNLAACVNATSLALADA-----------GIPMKGIASAATCGVVDGKPIVDLTSREE 173 Query: 181 SAAETDMNVV-MTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 + + + + +I V+ + L ++ A+ + Sbjct: 174 TDLLPRVTLATICGRDEVILVEL---QNRLHIDHLSTVMDAAKATCADV 219 >UniRef50_Q7V606 Polyribonucleotide nucleotidyltransferase n=50 Tax=cellular organisms RepID=PNP_PROMM Length = 723 Score = 172 bits (437), Expect = 6e-42, Method: Composition-based stats. Identities = 51/236 (21%), Positives = 93/236 (39%), Gaps = 25/236 (10%) Query: 2 RPAGRSNNQVRPVTLTRNYTK-HAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQ 56 R GR ++VRP++ GS L + G T+VL TA++ + L + Sbjct: 325 RVDGRKLDEVRPISSAAGVLPKRVHGSGLFQRGLTQVLSTATLGTPSDAQEMDDLNPGPE 384 Query: 57 GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 Y P S + G R + L RA+ + K + + + Sbjct: 385 KTYLHHYNFPPYSVGETRPMRS----PGRREVGHGSLAERAIIPVLPPKDSFPYVLRVVS 440 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNG----EAV 172 +VL ++G T S+ G+ +AL+DA P+K V+ ++G++ + Sbjct: 441 EVLSSNGSTSMGSVCGSTLALMDA-----------GVPLKAPVSGAAMGLIKEDAEIRIL 489 Query: 173 CDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 D++ +ED + D V T+DG I +Q + + + + AR + Sbjct: 490 TDIQGIEDFLGDMDFKVAGTKDG-ITALQMDMKITGLPVKTIAEAVNQARPARIHI 544 Score = 73.9 bits (180), Expect = 4e-12, Method: Composition-based stats. Identities = 49/222 (22%), Positives = 80/222 (36%), Gaps = 26/222 (11%) Query: 12 RPVTLTRN-YTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRST 70 R + LT Y A GSV++E GDT VL TA+ +G + +Y + Sbjct: 13 REIRLTTGRYAPQAGGSVMMECGDTAVLVTAT----RSTGREGIDFLPLICDYEERLYAA 68 Query: 71 HTRNARE-AAKGKQGGRTMEIQRLIARALRAAVDLKALGEFT---ITLDCDVLQADGGTR 126 +G+ R I RLI R +R + + + L D Sbjct: 69 GRIPGSFMRREGRPPERATLIARLIDRPMRPL-----FPSWMRDDLQIVATCLSLDERV- 122 Query: 127 TASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETD 186 A + A + L P +G +AAV VG++ + V + Y E + D Sbjct: 123 PADVLAVTGASMATLLAS--------IPFQGPMAAVRVGLLGDDFVLNPSYREIERGDLD 174 Query: 187 MNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 + V T DG ++ V+ A +++ + L Sbjct: 175 LVVAGTPDG-VVMVEAGANQ--LPQGDVIEAIDFGYEAVCEL 213 >UniRef50_Q6L224 Ribonuclease PH n=2 Tax=Thermoplasmatales RepID=Q6L224_PICTO Length = 260 Score = 172 bits (437), Expect = 6e-42, Method: Composition-based stats. Identities = 62/236 (26%), Positives = 97/236 (41%), Gaps = 16/236 (6%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR N R + + NY A GS +VE G TKV+ IEEG P F QG + Sbjct: 26 RLDGRGLNDFRDIKIFENYIPKASGSAMVELGRTKVVAGVKIEEGEP-FPDTPDQGVMAL 84 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRA--------AVDLKALGEFTIT 113 MLP + T A G G +E R++ R +R V + + Sbjct: 85 NIEMLPMAFPTFEA-----GPPGEEAIEYSRVVDRGIRESKMIDVTRLVIEPGTKVWMVF 139 Query: 114 LDCDVLQADGGTRTASITGACVALVDALQKLVEN-GKLKTNPMKGMVAAVSVGIVNGEAV 172 +D D++ G AS A AL +A+ G+ P+ +V++ + E V Sbjct: 140 IDIDIINYAGNIIDASTIAAVAALRNAIVPASRIGGEDFKLPVNANPVSVTMAKIGDELV 199 Query: 173 CDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 D + E+ + + + M ED I +Q + FT E++ + +R N + Sbjct: 200 IDPDLEEEQVSNGRITITMAEDDHIHAIQK-GDVGEFTMEDIRKAIKASRDTGNRI 254 >UniRef50_Q54EU6 Putative uncharacterized protein n=1 Tax=Dictyostelium discoideum RepID=Q54EU6_DICDI Length = 247 Score = 172 bits (436), Expect = 9e-42, Method: Composition-based stats. Identities = 54/230 (23%), Positives = 96/230 (41%), Gaps = 18/230 (7%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQ-GQGWI 59 +R GR N++R + + K A+GS E G+TK++ + KG + + Sbjct: 12 LRIDGRRANELRRINVEMGIFKRADGSAYYEQGNTKIIAAVYGPREISVSGKGVFDRAVV 71 Query: 60 TAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVL 119 E+ ST R ++ KG T EI L+ +A + + I + VL Sbjct: 72 KCEFSSSSFSTTERKPQQKTKG--DRVTTEIANLVKQAFESTIHTHLYPRSQINIYLQVL 129 Query: 120 QADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVE 179 Q+DGG + A+I + +AL+DA MK + A S ++G AV DL +E Sbjct: 130 QSDGGLKAAAINASTLALIDA-----------GISMKDFICACSTSCIDGIAVLDLNNIE 178 Query: 180 DSAAETDMNVVM-TEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 + + D + + + G +I + ++ + +L L + Sbjct: 179 ERSGGPDCLLSIQPQIGGVISLNMDSK---VPQDLFESVLELGEKGCKKI 225 >UniRef50_A8XLU8 Putative uncharacterized protein n=2 Tax=Caenorhabditis briggsae RepID=A8XLU8_CAEBR Length = 802 Score = 172 bits (435), Expect = 1e-41, Method: Composition-based stats. Identities = 53/244 (21%), Positives = 97/244 (39%), Gaps = 32/244 (13%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI--------EEGVPRFLK 52 +R GR RP+ + + K G + + G T+V+ T + + V + L Sbjct: 335 IRCDGRRPTDFRPIRIQVDMYKKLHGCSMFQRGQTQVMSTVTFDSPTAAFHPDSVAQLLG 394 Query: 53 GQGQGWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTI 112 Q + Y +T+ +A R + L +AL+ + + Sbjct: 395 SQRKKSFMLHYEFPSFATNDI--GVSASRSLNRREIGHGALAEKALKPLFPTG--FPYAV 450 Query: 113 TLDCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV----- 167 L C VL+++G + AS+ G +AL DA PMK A V++G++ Sbjct: 451 RLACQVLESNGSSSMASVCGGSLALYDA-----------GVPMKNAAAGVAIGLISDEKE 499 Query: 168 ---NGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGE 224 N + + D+ +ED A + D + T++G Q + + T ++L L AR Sbjct: 500 PETNYKVLTDILGIEDYAGDMDFKIAGTKNG-FTAAQLDVKNDGLTRQQLRESLDAARAG 558 Query: 225 SNPL 228 + + Sbjct: 559 IDHV 562 Score = 66.2 bits (160), Expect = 7e-10, Method: Composition-based stats. Identities = 37/220 (16%), Positives = 69/220 (31%), Gaps = 21/220 (9%) Query: 13 PVTLTRNYTKHAEGSVLV-EFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTH 71 + L + + +V GD V+ T + + EY + Sbjct: 37 SLELKTGHMARFASAAVVASSGDNSVMATV---VQRKQKQGDGNGVPLQVEYRPSASAVG 93 Query: 72 TRNAREAAKG-KQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTASI 130 + Q + I R I R++R + + E + L + I Sbjct: 94 RIPTNFLRRELSQSDNEILISRAIDRSIRPLMPANSY-ETQVICKPLALDENADQIMLGI 152 Query: 131 TGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGI-VNGEAV-CDLEYVEDSAAETDMN 188 A AL + + P G +AA+ V + G+ + E A+ +M Sbjct: 153 NAASSALH-----------ISSAPFNGPLAAIRVSMDPRGKIFHVNPGQEELKASSMNMI 201 Query: 189 VVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 V M + + + ++ E E+L L +A L Sbjct: 202 VAMRRNQKTVMIELDGEETR--GEQLEEALDVAFQNVERL 239 >UniRef50_Q9RU11 Ribonuclease PH n=2 Tax=Deinococcus RepID=RNPH_DEIRA Length = 246 Score = 172 bits (435), Expect = 1e-41, Method: Composition-based stats. Identities = 93/215 (43%), Positives = 133/215 (61%), Gaps = 2/215 (0%) Query: 5 GRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYG 64 GR RPV++ R HA GS ++ G T++L T ++++ ++G+ +GW+TAEY Sbjct: 11 GRDALTPRPVSVQRGVNPHAPGSAHLKMGRTEILATVTLDDKPAPHMRGKKEGWLTAEYS 70 Query: 65 MLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGG 124 MLPRST R AR + Q GR EIQRL+ RALR+++DL+ T+ +DCDVL ADGG Sbjct: 71 MLPRSTTDRQAR--ERNLQNGRRHEIQRLLGRALRSSMDLRPFKNQTLYVDCDVLVADGG 128 Query: 125 TRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAE 184 TR AS+ AL D +L+ +G+L P+ V A+SVG++ E DL+Y ED A Sbjct: 129 TRVASVLAGHAALHDFCDRLINSGQLSEWPIVHNVGAISVGLIGDELRVDLDYEEDKVAR 188 Query: 185 TDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLA 219 D+NV+ T+ G ++EVQG AE P T +E LL+ Sbjct: 189 ADLNVIATDTGLLVEVQGGAELGPITVDEYTRLLS 223 >UniRef50_B9MZ65 Predicted protein n=6 Tax=Magnoliophyta RepID=B9MZ65_POPTR Length = 263 Score = 172 bits (435), Expect = 1e-41, Method: Composition-based stats. Identities = 50/228 (21%), Positives = 83/228 (36%), Gaps = 23/228 (10%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR +Q R A GS EFG+TKV+ + + + +G + Sbjct: 41 RSDGRGFHQCRSAFFRTGAVNSAAGSAYAEFGNTKVIVSVFGPRESKKAMMYSDKGKLNC 100 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQA 121 +T QG E ++ +AL AV L+ + T+ + VL++ Sbjct: 101 NVSYTTFAT--------TVHGQGSDNKEFSTMLHKALEGAVMLETFPKTTVDVFALVLES 152 Query: 122 DGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDS 181 G I+ A +AL DA M +VA VSV + + D E+S Sbjct: 153 GGSDLPVVISCASLALADA-----------GIMMYDLVAGVSVSCLGRNLIIDPTLEEES 201 Query: 182 AAETDMNV-VMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 + + + M I ++ T E ++ L + L + L Sbjct: 202 FQDGSLMITCMPSHYEITQLTITGE---WSTANLNEAMQLCLDACSKL 246 >UniRef50_B8D6B8 Probable exosome complex exonuclease 2 n=1 Tax=Desulfurococcus kamchatkensis 1221n RepID=B8D6B8_DESK1 Length = 286 Score = 171 bits (434), Expect = 1e-41, Method: Composition-based stats. Identities = 55/245 (22%), Positives = 99/245 (40%), Gaps = 25/245 (10%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR RP+ + N A GS LV+ G T+V+ +E P F G+G + Sbjct: 28 RIDGRGLTDYRPIEVILNPITKASGSSLVKLGGTQVIAGVKLELEEP-FPDRPGEGVLQV 86 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALR--AAVDLKALG------EFTIT 113 +P ++ + G +E+ R+I R+LR AV L AL +++ Sbjct: 87 HAEFVPLASPSFEP-----GPPDENAIEVARVIDRSLRESKAVKLDALAIEPGKIVWSVY 141 Query: 114 LDCDVLQADGGTRTASITGACVALVDALQKLVENGKL----------KTNPMKGMVAAVS 163 D ++ G + + +AL + + G+ P+ +VA V+ Sbjct: 142 TDIYLVDHQGNIIDTGMLASMLALATSRIPELIKGENGYKVDHTKYVGPLPINTLVATVT 201 Query: 164 VGIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARG 223 +GI N + D E++ ++ + + + E GRI +Q F+ L + +A Sbjct: 202 MGIYNDVIIVDPLLEEEAVIDSFITIAIDESGRICGIQKRGMKG-FSRSVLDNTIEIALS 260 Query: 224 ESNPL 228 + L Sbjct: 261 KGREL 265 >UniRef50_Q8TCS8 Polyribonucleotide nucleotidyltransferase 1, mitochondrial n=56 Tax=cellular organisms RepID=PNPT1_HUMAN Length = 783 Score = 171 bits (434), Expect = 2e-41, Method: Composition-based stats. Identities = 46/235 (19%), Positives = 84/235 (35%), Gaps = 15/235 (6%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIE--------EGVPRFLKG 53 R GR +R V+ + K GS L + G T+VLCT + + + V + G Sbjct: 358 RCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESGIKSDQVITAING 417 Query: 54 QGQGWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTIT 113 Y P +T+ R + L +AL + FTI Sbjct: 418 IKDKNFMLHYEFPPYATNEIGKVTG----LNRRELGHGALAEKALYPVIPRD--FPFTIR 471 Query: 114 LDCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVC 173 + +VL+++G + AS G +AL+D+ + + I + + Sbjct: 472 VTSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLVTKTDPEKGEIEDYRLLT 531 Query: 174 DLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 D+ +ED + D + T G I +Q + + ++ + A + Sbjct: 532 DILGIEDYNGDMDFKIAGTNKG-ITALQADIKLPGIPIKIVMEAIQQASVAKKEI 585 Score = 82.0 bits (201), Expect = 1e-14, Method: Composition-based stats. Identities = 43/216 (19%), Positives = 82/216 (37%), Gaps = 23/216 (10%) Query: 12 RPVTLTRNYTKH-AEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRST 70 R + ++ A+GS +V+ GDT V+ TA + + +Y + Sbjct: 54 RKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMP----LVVDYRQKAAAA 109 Query: 71 HTRNARE-AAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADG--GTRT 127 + + + R+I R++R + + C++L DG Sbjct: 110 GRIPTNYLRREIGTSDKEILTSRIIDRSIRPLFPAGYFYDTQ--VLCNLLAVDGVNEPDV 167 Query: 128 ASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDM 187 +I GA VAL L P G V AV +GI++GE V + E S++ ++ Sbjct: 168 LAINGASVAL-----------SLSDIPWNGPVGAVRIGIIDGEYVVNPTRKEMSSSTLNL 216 Query: 188 NVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARG 223 V +I+ ++ +AE ++ + + Sbjct: 217 VVAGAPKSQIVMLEASAEN--ILQQDFCHAIKVGVK 250 >UniRef50_D0NT61 Exosome complex exonuclease RRP41-like protein n=1 Tax=Phytophthora infestans T30-4 RepID=D0NT61_PHYIN Length = 777 Score = 171 bits (433), Expect = 2e-41, Method: Composition-based stats. Identities = 48/249 (19%), Positives = 85/249 (34%), Gaps = 39/249 (15%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQ------ 54 +R GR + +VR + +GS E G+TKV+ + G Sbjct: 25 LRVDGRRSEEVRRIRTRFGLFSRVDGSSYYEQGNTKVVAVVYGPRELRTAAAGSVNSGAA 84 Query: 55 --------------GQGWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRA 100 + + E+ +T R + + + +E+ + + A Sbjct: 85 AVGTGSGNAASNTQPRATVNCEFTQAAFATSERKPQRSG----DRKKLEMSLAVKQIFEA 140 Query: 101 AVDLKALGEFTITLDCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVA 160 + + I + VL ADGG ASI +AL+DA + V Sbjct: 141 CIQTQLYPRSQIDIFVQVLHADGGELPASINAITLALIDA-----------GIALNDFVV 189 Query: 161 AVSVGIVNGEAVCDLEYVEDSAAETDMNVVMT-EDGRIIEVQGTAEGEPFTHEELLILLA 219 A S G + +CDL Y E+ A M + + ++ +Q + E L+ Sbjct: 190 ASSAGYLQQTMLCDLNYAEEVARAPQMIIALNPRTQKLNLLQMECK---LQLELFESLME 246 Query: 220 LARGESNPL 228 +A N + Sbjct: 247 VATEGCNQI 255 >UniRef50_C7LKG2 Putative polyribonucleotide nucleotidyltransferase n=1 Tax=Candidatus Sulcia muelleri SMDSEM RepID=C7LKG2_SULMS Length = 691 Score = 171 bits (433), Expect = 2e-41, Method: Composition-based stats. Identities = 51/232 (21%), Positives = 93/232 (40%), Gaps = 28/232 (12%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTAS----IEEGVPRFLKGQGQG 57 R GRS + +R + N+ GS + G+T+ L T + ++ + Q Q Sbjct: 319 RLDGRSLDDLRKIWSQTNFLPSVHGSAIFSRGETQALSTVTLGSSLDVNKIDNVILQDQQ 378 Query: 58 WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCD 117 Y P ST + R + L RAL+ + K +TI + D Sbjct: 379 KFYLHYNFPPFSTGEIKLLKG----ISRREIGHGNLAQRALKNIIPFKT--PYTIRVVSD 432 Query: 118 VLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNG------EA 171 +L+++G + A++ + +AL+DA P+K V+ +S+G++ Sbjct: 433 ILESNGSSSMATVCASTLALMDA-----------GIPIKRPVSGISMGLIINFLTDEAII 481 Query: 172 VCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARG 223 + D+ ED+ + D + T+ G I Q +E LL + A+ Sbjct: 482 LSDILGDEDNIGDMDFKMTGTKFG-ITACQMDINFPGSNYEMLLNSIFKAKN 532 Score = 66.2 bits (160), Expect = 8e-10, Method: Composition-based stats. Identities = 33/210 (15%), Positives = 69/210 (32%), Gaps = 19/210 (9%) Query: 14 VTLTRNYT-KHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTHT 72 +++ A G+ +V G T ++ T + +G + +Y + Sbjct: 18 ISIETGKLACQANGTAVVRMGKTSLIATI---VISKKEKEGINFLPLIIDYKENYSAGGK 74 Query: 73 RNARE-AAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTASIT 131 + + + RLI R LR L E I + +L D + Sbjct: 75 IPGGFIKRERRPSDEEVLTMRLIDRLLRPLFPQNFLKE--IQIIIYLLSYDRNVLPDGL- 131 Query: 132 GACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNVVM 191 A + P KG V+AV + + + S ++D+N+++ Sbjct: 132 --------AGLVASAAVSISGIPFKGPVSAVRIIRFKNSFLINPGIK--SVKKSDINLII 181 Query: 192 TEDGRIIEVQGTAEGEPFTHEELLILLALA 221 I + E + + E++ + +A Sbjct: 182 GGTKNSILM-IEGEMKEISENEIIYFIKIA 210 >UniRef50_B7ATJ6 Putative uncharacterized protein n=2 Tax=Bacteria RepID=B7ATJ6_9BACE Length = 742 Score = 170 bits (431), Expect = 3e-41, Method: Composition-based stats. Identities = 48/235 (20%), Positives = 86/235 (36%), Gaps = 27/235 (11%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI-EEGVPRFLKGQGQ---- 56 RP GR+ Q+RP+ + GS + G T++ ++ + + G + Sbjct: 358 RPDGRAITQIRPLAAEIDLIPRVHGSAMFTRGQTQICDVVTLAPLSEAQKVDGLDENVTA 417 Query: 57 GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 Y S G R + L RAL + + + I Sbjct: 418 KRYIHHYNFPSYSVGETKPSRG----PGRREIGHGALAERALIPVLPSEEEFPYAIRAVS 473 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV------NGE 170 + +++G T AS +C++L+ A P+K MVA +S G+V + Sbjct: 474 ETFESNGSTSMASTCASCMSLMAA-----------GVPIKRMVAGISCGLVTGDTDDDYI 522 Query: 171 AVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 + D++ +ED + D V T +G I +Q + T + +A R Sbjct: 523 VLTDIQGLEDFFGDMDFKVTGTTEG-ITAIQMDIKIHGLTRPIVEEAIARTREAR 576 Score = 61.2 bits (147), Expect = 2e-08, Method: Composition-based stats. Identities = 39/221 (17%), Positives = 78/221 (35%), Gaps = 23/221 (10%) Query: 12 RPVTLTRN-YTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRST 70 R +T+ A G+ L+ +GDT VL TA+ + + ++ EY + Sbjct: 58 RTLTVDVGRVCAQANGAALMHYGDTVVLSTATASKEPREGIDFFP---LSVEYEEKLYAV 114 Query: 71 HTRNAR-EAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRT-- 127 +GK + R+I R +R +TL+ V+ D R Sbjct: 115 GKIPGGFNKREGKASENAILTSRVIDRPMRPLFP--KDYRNDVTLNNMVMSVDPECRPEL 172 Query: 128 ASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDM 187 ++ GA +A + P G A +G+++GE V + + + + Sbjct: 173 VAMLGASIA-----------TCISDIPFDGPCAMTQLGMIDGEFVVNPSQEQWKNGDLRL 221 Query: 188 NVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 V T ++I ++ A ++ + + + Sbjct: 222 TVASTS-QKVIMIECGANE--VPEARMIEAIYKCHEVNQTI 259 >UniRef50_UPI00006A4B1C PREDICTED: similar to LOC495942 protein n=1 Tax=Ciona intestinalis RepID=UPI00006A4B1C Length = 247 Score = 170 bits (431), Expect = 3e-41, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 86/231 (37%), Gaps = 22/231 (9%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQ---GQGW 58 R GR +++R V A+GS +E G+TKVL ++ + + + Sbjct: 13 RFDGRKPSELRRVRCNMGVFTQADGSAYIEQGNTKVLAAIYGPHEASNNMRSRVCLDKCF 72 Query: 59 ITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDV 118 I E+ S+ R R + ++ I + AAV + I + V Sbjct: 73 INCEFSQAMFSSAERKKRSRG----DRKGKDMSAHIKQTFEAAVRTQLYPRSQIDIYLQV 128 Query: 119 LQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYV 178 L +DG A + A +AL+DA MK V A S + ++ D+ +V Sbjct: 129 LHSDGSLYCACVNAATLALIDA-----------GIAMKDYVCACSASLTKETSLIDINHV 177 Query: 179 EDSAAETDMNVV-MTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 E+ A + + M + +II + +EL L+ + Sbjct: 178 EELAGCAEFSAAIMPKLDQIIYSELNGR---IHQDELGQLVDAVTNGCKDI 225 >UniRef50_Q30TH2 Polyribonucleotide nucleotidyltransferase n=19 Tax=Epsilonproteobacteria RepID=PNP_SULDN Length = 721 Score = 170 bits (430), Expect = 4e-41, Method: Composition-based stats. Identities = 49/238 (20%), Positives = 91/238 (38%), Gaps = 29/238 (12%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTAS--IEEGVPRFLKGQGQGW 58 +R GR+ N++RP++++ N A S L G T+ L + + F +G Sbjct: 340 VRADGRALNEIRPISISTNVLPSAHASCLFTRGQTQALVVLTMGGPKDAQMFENLTDEGT 399 Query: 59 ----ITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITL 114 Y S + K R + L RAL V+L+ T+ L Sbjct: 400 QNENFMVHYNFPGFSVGEASPIMGTK----RRELGHGNLAKRALEPIVNLEG---QTVRL 452 Query: 115 DCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV----NGE 170 ++L+++G + A++ G +AL A +A +++G+V Sbjct: 453 VSEILESNGSSSMATVCGGYMALRAA-----------DIETSDTIAGIAMGMVSEGDKYA 501 Query: 171 AVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 + D+ +ED + D V ++DG I +Q + + L L A+ + Sbjct: 502 ILSDIMGLEDHDGDLDFKVTGSKDG-ITAMQMDIKLGGISLNILKEALYQAKEGRAHI 558 Score = 55.8 bits (133), Expect = 1e-06, Method: Composition-based stats. Identities = 30/189 (15%), Positives = 66/189 (34%), Gaps = 16/189 (8%) Query: 20 YTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTHTRNARE-A 78 K A G+ ++ G+T +L T I+E +T +Y + Sbjct: 21 VAKQANGAAWLKSGNTVILATVVIDETEIVKDDFLP---LTVQYIEKAYAAGKIPGGFFK 77 Query: 79 AKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTASITGACVALV 138 + K R++ R+LR IT+ + + + V Sbjct: 78 RETKASDFETLTSRIVDRSLRPLFPKGFGHPTQITIMVFSVDKESDLQ-----------V 126 Query: 139 DALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRII 198 AL + + V+A+ V ++GE + + E + D+ + T++ ++ Sbjct: 127 LALNAASAALYVSDIDINKSVSAIRVAKIDGELILNPTLSELDKSTLDLYLSGTKE-DLL 185 Query: 199 EVQGTAEGE 207 ++ ++G Sbjct: 186 MIEMRSKGG 194 >UniRef50_B1ZS98 Polyribonucleotide nucleotidyltransferase n=7 Tax=Chlamydiae/Verrucomicrobia group RepID=PNP_OPITP Length = 730 Score = 170 bits (430), Expect = 4e-41, Method: Composition-based stats. Identities = 47/243 (19%), Positives = 84/243 (34%), Gaps = 31/243 (12%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFL-----KGQG 55 +R GR +RP+ GS + + GDT+ + ++ G Sbjct: 315 VRADGRGQKDIRPLQAQVGVLPRVHGSAMFQRGDTQNIALTTLGPTKDAQDLDALTGGVK 374 Query: 56 QGWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLD 115 Y P S G R + L R+L + + + ++I + Sbjct: 375 SKSFLLHYNFPPFSVGETGRFTG----PGRREIGHGALAERSLVPVLPPEDVFPYSIRVV 430 Query: 116 CDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV-----NGE 170 +++ ++G T ASI G C++L+DA P+ VA +S G++ +G Sbjct: 431 SEIMASNGSTSMASICGGCLSLMDA-----------GVPIIAPVAGISCGLMTQNASDGS 479 Query: 171 A-----VCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 + D+ ED + D + T G I Q + E + AR Sbjct: 480 IEKWVTITDILGEEDHFGDMDFKLAGTSKG-ITGFQLDLKINGLPFEIAKTAIMQARDAR 538 Query: 226 NPL 228 + Sbjct: 539 MEI 541 Score = 57.3 bits (137), Expect = 4e-07, Method: Composition-based stats. Identities = 41/220 (18%), Positives = 72/220 (32%), Gaps = 25/220 (11%) Query: 14 VTLTRNYTKH-AEGSVLVEFGDTKVLCT-ASIEEGVPRFLKGQGQGWITAEYGMLPRSTH 71 +T + A G+V V+ G+T V T + P +T +Y + Sbjct: 14 ITFSTGSIAQLANGAVNVQVGETNVFVTACVAQTTKPGQDWFP----LTVDYREKYAAAG 69 Query: 72 TRNARE-AAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQAD--GGTRTA 128 +G+ + + RL R R L E + + + AD + + Sbjct: 70 RFPGGYFKREGRPSEKEILTSRLCDRPCRPLFPEGFLNE--VQIIGQLFSADLVNESDIS 127 Query: 129 SITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMN 188 + GA AL + P G +AAV V + G+ V + + A+ D+ Sbjct: 128 MVNGASAALA-----------ISDIPWNGPIAAVRVAEIEGKFVANPTIDQMFASSLDLI 176 Query: 189 VVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 V E + + E + LA P+ Sbjct: 177 YVGNEKD---MLMIEGSADQIPEERFIEALAFGHESIQPI 213 >UniRef50_A8Z660 Polyribonucleotide nucleotidyltransferase n=4 Tax=Flavobacteriales RepID=PNP_SULMW Length = 728 Score = 169 bits (429), Expect = 5e-41, Method: Composition-based stats. Identities = 46/234 (19%), Positives = 89/234 (38%), Gaps = 30/234 (12%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTAS----IEEGVPRFLKGQGQ 56 +R GRS + +R + + GS + G+T+ L T + ++ + + Sbjct: 339 IRLDGRSLDDIRNICSQVDCLPGVHGSAIFTRGETQALSTVTLGSSLDVNKIDNAIMRAK 398 Query: 57 GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 Y P ST + R + L RAL+ + +TI + Sbjct: 399 QRFYLHYNFPPFSTGEIKLLKG----VSRREIGHGNLAQRALKNIIPTT----YTIRVVS 450 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGE------ 170 DVL+++G + A++ + +AL+D +K V+ +S+G++ Sbjct: 451 DVLESNGSSSMATVCASTLALMD-----------SGIIVKRPVSGISMGLIMNYLTGEAI 499 Query: 171 AVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGE 224 + DL ED + D + TE G + Q + T++ L + A+ Sbjct: 500 ILSDLLGDEDYIGDMDFKITGTEYG-MTACQMDIKISGITYDVLSYTIFKAKKG 552 Score = 68.1 bits (165), Expect = 2e-10, Method: Composition-based stats. Identities = 37/229 (16%), Positives = 71/229 (31%), Gaps = 31/229 (13%) Query: 4 AGRSNNQVRPVTLTRNYT-KHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAE 62 GR+ +++ + A GS +V G+T +L T I + K +T + Sbjct: 14 DGRA------LSIETGELARKANGSAVVRMGNTSLLATVVISKESKEDFKFIP---LTID 64 Query: 63 YGMLPRSTHTRNARE-AAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQA 121 Y + +G+ + RL+ R LR E I + L Sbjct: 65 YREKYSAGGKIPGGYIKREGRPYDEEILTMRLVDRLLRPLFKDNYYNEIQIMISL--LSY 122 Query: 122 DGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDS 181 D + A + +G V+ V + +N + + E Sbjct: 123 DINVLPDGL---------AGLVASTAVSISEISFQGPVSTVRIIRINDAFIINPGIEEIK 173 Query: 182 AAE-------TDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARG 223 ++ +V + II V+ E + E++ + A Sbjct: 174 KSDFYLDLDLDLDLIVGGTNNYIILVE--GEMREISEIEMMEAIVKAHK 220 >UniRef50_O42872 Exosome complex component ski6 n=1 Tax=Schizosaccharomyces pombe RepID=RRP41_SCHPO Length = 242 Score = 169 bits (429), Expect = 5e-41, Method: Composition-based stats. Identities = 48/229 (20%), Positives = 83/229 (36%), Gaps = 19/229 (8%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIE-EGVPRFLKGQGQGWI 59 +R GR +++R GS +E G+TKVLC E V + + ++ Sbjct: 12 LRNDGRRWDEMRNFQCRIGIEPSENGSAFIELGNTKVLCIVDGPSEPVIKSKARADRTFV 71 Query: 60 TAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVL 119 E + ST R K R + + + I++ VL Sbjct: 72 NVEINIASFSTIDVKKRF----KSDRRIQLQCLALQNTFEEIIQTELYPRSQISVYLHVL 127 Query: 120 QADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVE 179 Q DG + I +AL+DA P+K V + GIV + + DL +E Sbjct: 128 QDDGAVMASCINATTLALIDA-----------GIPVKDFVCCSTAGIVESDMLLDLNSLE 176 Query: 180 DSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 +SA V+ +++ +Q + L ++ +A S + Sbjct: 177 ESALSWLTVAVLGNIKKVVYMQL---ETSMHLDYLESVMNMAIAGSEHI 222 >UniRef50_C7SB59 Exosome component 9 n=1 Tax=Platynereis dumerilii RepID=C7SB59_PLADU Length = 530 Score = 169 bits (428), Expect = 7e-41, Method: Composition-based stats. Identities = 48/250 (19%), Positives = 86/250 (34%), Gaps = 32/250 (12%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 MR GR R + + + G V G T V+ S E P+ +G + Sbjct: 117 MRLDGRGCYDYRRIKIQFGIDR---GCCQVHLGKTIVMAQTSCEVTTPKQ-TRPSEGNVF 172 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRA--AVDLKALG------EFTI 112 + P + A G+Q +E+ R++ R ++ VD ++L +TI Sbjct: 173 VNVELSPMAAPHFEA-----GRQSDAGVELTRILERCIKESRCVDTESLCIMSGVKVWTI 227 Query: 113 TLDCDVLQADGGTRTASITGACVALVDALQKLV------------ENGKLKTNPMKGMVA 160 +D VL +G A+ A +LV + V E+ + M Sbjct: 228 RVDVHVLNHNGNLIDAASIAAISSLVHFRRPDVSVSGEDVTIHSLEDRDPIPLSVHHMPI 287 Query: 161 AVSVGIV--NGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILL 218 V+ + D E++ + + V M + I Q T E++L Sbjct: 288 CVTCAFYHKGTYLLIDPTDKEENVMDGKVIVGMNKHREICTFQLTGSMLLL-KEQVLRCS 346 Query: 219 ALARGESNPL 228 +A + + Sbjct: 347 NMAVVKVGEM 356 >UniRef50_Q7VIL0 Polyribonucleotide nucleotidyltransferase n=2 Tax=Helicobacter RepID=PNP_HELHP Length = 709 Score = 169 bits (428), Expect = 7e-41, Method: Composition-based stats. Identities = 54/238 (22%), Positives = 92/238 (38%), Gaps = 29/238 (12%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTAS------IEEGVPRFLKGQ 54 +R GR VRP+++ N A GSVL G T+ L +A+ + K Sbjct: 320 IRADGRGLKDVRPISIQTNILPFAHGSVLFTRGQTQALVSATIGGDNDAQNYEMLGSKNA 379 Query: 55 GQGWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITL 114 + Y S + G G R + L RAL ++V + TI L Sbjct: 380 LKKRFLFHYNFPSFSVGE----ASMIGSVGRRELGHGNLAKRALHSSVQEQDK---TIRL 432 Query: 115 DCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGE---- 170 ++L+++G + AS+ G +AL ++ ++A V++G+V + Sbjct: 433 VSEILESNGSSSMASVCGGSLALCAC-----------GIKVESLIAGVAMGLVTQDEQCA 481 Query: 171 AVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 + D+ +ED + D V G I +Q + T E L L A+ + Sbjct: 482 ILTDISGLEDHDGDMDFKVAGGYKG-ISAMQMDIKLGGITQEILCQALFQAKEAREQI 538 Score = 55.0 bits (131), Expect = 2e-06, Method: Composition-based stats. Identities = 34/211 (16%), Positives = 74/211 (35%), Gaps = 27/211 (12%) Query: 24 AEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTHTRNARE-AAKGK 82 A G +L + G + +L + +E + ++ +Y + + + +GK Sbjct: 24 ANGGILYQNGGSVLLASVCTQENEKYDDEFLP---LSVQYIEKTYANNKFPSGFIKREGK 80 Query: 83 QGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADG-GTRTASITGACVALVDAL 141 + RLI R LR + ++ VL DG ++AL Sbjct: 81 PSEFEILTSRLIDRTLRPLFP--KGYTYITSIVVMVLSYDGKSDLQ----------LNAL 128 Query: 142 QKLVENGKLKTNPMKGM----VAAVSVGIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRI 197 + P++ + V+ V +G +G + + + S +E ++ V D + Sbjct: 129 NAAACALYVSDLPLESLQDKAVSGVRIGRKDGHFIINPTMEQLSESELNL-FVSGRDDEL 187 Query: 198 IEVQGTAEGE-----PFTHEELLILLALARG 223 + ++ + + E L L A+ Sbjct: 188 LMIEMKSIRTAQGANELSEENFLEALECAKN 218 >UniRef50_Q7UR95 Polyribonucleotide nucleotidyltransferase n=5 Tax=Planctomycetaceae RepID=PNP_RHOBA Length = 753 Score = 168 bits (425), Expect = 1e-40, Method: Composition-based stats. Identities = 48/236 (20%), Positives = 91/236 (38%), Gaps = 25/236 (10%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQG 57 RP GR +N +R + + GS L + G+T+ L T ++ +E L+ + Sbjct: 316 RPDGRDHNSLRAIHCETDLLPRVHGSALFQRGETQALITIALGTSRDEQRVDGLQDEYSK 375 Query: 58 WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCD 117 +Y S G R + L R++ + +TI + D Sbjct: 376 KFMLDYNFPSYSVGECRPIRG----PGRREIGHGCLAERSVAPVLPSADDFPYTIRVISD 431 Query: 118 VLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNG-----EAV 172 + +++G + AS+ GA + L+ P+ VA +SVG+V + Sbjct: 432 ITESNGSSSMASVCGATLGLM-----------ASGVPISNPVAGISVGLVQDGPDNWCLI 480 Query: 173 CDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 D+ ED + D + T++G I +Q + T++ + L +R + Sbjct: 481 TDILGTEDHFGDMDFKIAGTQNG-ITGIQLDLKVTGVTNDIIRATLKQSREARIEI 535 Score = 74.7 bits (182), Expect = 2e-12, Method: Composition-based stats. Identities = 39/219 (17%), Positives = 80/219 (36%), Gaps = 24/219 (10%) Query: 14 VTLTRNYT-KHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTHT 72 ++ + K A GSVLV++G+T VL A+ P + +Y + Sbjct: 17 LSFETGHIAKQAAGSVLVQYGETVVLVAAASGTPRPGIDFFP----LMCDYRERLAAAGK 72 Query: 73 RNARE-AAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDV--LQADGGTRTAS 129 +G+ + + RL+ R +R E + LQ DG + Sbjct: 73 FPGGFLKREGRPSTKEILSSRLMDRPIRPLWPAGYKDEVQVQACVIASDLQNDGDVL--A 130 Query: 130 ITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNV 189 + G AL + P KG + +V VG V+G+ V D ++++++ Sbjct: 131 MIGGATALH-----------ISPLPFKGPLGSVRVGKVDGKLVAFPTA--DQLEQSELDM 177 Query: 190 VMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 +++ ++ + +E++ + A + Sbjct: 178 IVSGSRDMVAM-IEGFANEMPEDEMMEAIGFAHDAIREV 215 >UniRef50_A4RTW2 Predicted protein n=4 Tax=cellular organisms RepID=A4RTW2_OSTLU Length = 823 Score = 168 bits (425), Expect = 2e-40, Method: Composition-based stats. Identities = 47/243 (19%), Positives = 88/243 (36%), Gaps = 32/243 (13%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQG 57 R GR+ + +RP+ GS L G+T+ + A++ + ++ Sbjct: 378 RQDGRTTSMIRPIACEAGILPRTHGSSLFTRGETQAIGVATLGGSQDAQRQDDVEAGEDK 437 Query: 58 WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCD 117 Y P S G R + L RAL + + F L+ Sbjct: 438 RFMLHYFFPPSSVGE----TGRTGGASRREIGHGNLAERALMPILPSEEDFPFVCKLEST 493 Query: 118 VLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNG-------- 169 + +++G + A++ +AL+DA P+K VA +++G++ G Sbjct: 494 ITESNGSSSMATVCAGTLALLDA-----------GVPIKRKVAGIAMGLILGSEAAGGGD 542 Query: 170 ----EAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 + D+ ED+ + D V +DG I Q + E T + + L A+ Sbjct: 543 ELEPIVLTDILGSEDALGDMDFKVAGDKDG-ITAFQMDIKVEGITIDVMKTALEEAQKGL 601 Query: 226 NPL 228 + Sbjct: 602 VHI 604 Score = 46.2 bits (108), Expect = 8e-04, Method: Composition-based stats. Identities = 37/241 (15%), Positives = 71/241 (29%), Gaps = 34/241 (14%) Query: 5 GRSNNQVRPVTLTRNYTK----------HAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQ 54 GR+ R + L ++ A G+V G+T + TA Sbjct: 62 GRAERDARELVLRIGESEVRLETGKIGLQANGAVFASEGETVLYNTACASRECTGDGSFV 121 Query: 55 GQGWITAEY-GMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTIT 113 +T Y + T + G RL+ R +R + + Sbjct: 122 P---LTVNYAERFSAAGRTSGGYKKRDGGLRENETLKARLVDRPIRPMM----YKGWGYE 174 Query: 114 LDCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV--NGEA 171 VLQ S A+ + P+K V V VG++ + E Sbjct: 175 --TQVLQW----LM-SFDAERSTDALAITAASAALAVSDIPLKKPVVGVRVGLMPGSDEP 227 Query: 172 VCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARG----ESNP 227 V + + + D+ + T++ + + T +E+L + + Sbjct: 228 VVNPTSEQMKQSRLDLVLAGTDE---AVLMIEGFCDFLTTDEMLRAIEKGQEAVAKACKE 284 Query: 228 L 228 + Sbjct: 285 I 285 >UniRef50_C4LJ74 Polyribonucleotide nucleotidyltransferase n=28 Tax=Corynebacterineae RepID=PNP_CORK4 Length = 775 Score = 167 bits (422), Expect = 4e-40, Method: Composition-based stats. Identities = 53/240 (22%), Positives = 92/240 (38%), Gaps = 28/240 (11%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIE----EGVPRFLKGQGQ 56 R GR +R + + + A GS L + G+T++L +++ E L Sbjct: 391 FRIDGRGVEDIRDLDVEVDLVPRAHGSSLFQRGETQILGVTTLDTLKMEQQVDSLGPVDH 450 Query: 57 GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 Y P ST G R + L RAL+ + + +TI Sbjct: 451 RRYIHHYNFPPYSTGE----TGRVGSPKRREIGHGALAERALKPMIPSRDDFPYTIRQVS 506 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEA----- 171 + L ++G T S+ + ++L +A P+K VA +++G+V+GE Sbjct: 507 EALGSNGSTSMGSVCASTLSLYNA-----------GVPLKAPVAGIAMGLVSGEVKGKMT 555 Query: 172 ---VCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 + D+ ED+ + D V TED I +Q + + + L L AR + Sbjct: 556 YVTLTDILGAEDAFGDMDFKVAGTED-FITALQLDTKLDGIPSDVLAGALKQAREARLEI 614 >UniRef50_A8PS54 3' exoribonuclease family, domain 2 containing protein n=1 Tax=Brugia malayi RepID=A8PS54_BRUMA Length = 752 Score = 166 bits (421), Expect = 4e-40, Method: Composition-based stats. Identities = 53/241 (21%), Positives = 96/241 (39%), Gaps = 32/241 (13%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRF--------LKG 53 R GR N++RPV + + K+ GS L + G T+V T + + F L Sbjct: 349 RCDGRKFNELRPVNIRMDVHKNLHGSALFQRGQTQVFSTVTFDAPSAAFQPDALSQLLGA 408 Query: 54 QGQGWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTIT 113 Q + Y +T ++ + R + L +AL+ + + + Sbjct: 409 QQKKMFMLHYQFPSFATTAI----SSSARTSRRELGHGALAEKALKRLIP--DDFPYCLR 462 Query: 114 LDCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV------ 167 L CDVL+++G + AS+ C+AL+DA +K A +++G++ Sbjct: 463 LACDVLESNGSSSMASVCAGCLALLDA-----------GVQIKAPAAGIAMGLIINEERN 511 Query: 168 NGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNP 227 + + D+ +ED A + D + T G +Q + T + + L AR Sbjct: 512 DYRILTDINGLEDFAGDMDFKIAGTVRG-YTAMQLDLKVPGITPKLVTESLKQARNGLEH 570 Query: 228 L 228 L Sbjct: 571 L 571 Score = 87.0 bits (214), Expect = 4e-16, Method: Composition-based stats. Identities = 37/218 (16%), Positives = 71/218 (32%), Gaps = 18/218 (8%) Query: 14 VTLTRNYTKH-AEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTHT 72 + + A+G+V+V G+T VL T +T ++ + Sbjct: 45 IRFETGHIARLADGAVVVSQGETSVLATVVGRHSS--ASDTADFMPLTVDFQQSASAVGR 102 Query: 73 RNAREAAKGKQ-GGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTASIT 131 + Q + R+I R++R GE I + DG + Sbjct: 103 IPMNYLRRELQRNDADILASRMIDRSIRPLFPKDYSGETQIICKPLAVDDDGDPVMLGLN 162 Query: 132 GACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNVVM 191 A AL L P +G + AV V ++N E V + ++ D+ + Sbjct: 163 AASAAL-----------TLSDIPWEGPLGAVRVALINNEVVVNPSRKNMKSSSVDLVIAG 211 Query: 192 TEDGR-IIEVQGTAEGEPFTHEELLILLALARGESNPL 228 ++G+ I+ + E + + + L Sbjct: 212 CDNGKRILMIDMDGCE--IEMENFSECIRIGLQAISHL 247 >UniRef50_Q96B26 Exosome complex exonuclease RRP43 n=43 Tax=Metazoa RepID=EXOS8_HUMAN Length = 276 Score = 166 bits (420), Expect = 5e-40, Method: Composition-based stats. Identities = 45/247 (18%), Positives = 80/247 (32%), Gaps = 27/247 (10%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 RP GR + R T+ A+GS LV+ G+T V+C E P +G++ Sbjct: 23 RPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAAP-STDAPDKGYVVP 81 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRA--AVDLKALG------EFTIT 113 + P + G G + IA + + + L + + Sbjct: 82 NVDLPPLCSSRFR-----SGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLVWVLY 136 Query: 114 LDCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNP-----------MKGMVAAV 162 D L DG A AL + V + ++ A Sbjct: 137 CDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSYLNIRTHPVAT 196 Query: 163 SVGIVNGEAV-CDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALA 221 S + + + D E+ A + +VM E+G++ + G T +L ++ A Sbjct: 197 SFAVFDDTLLIVDPTGEEEHLATGTLTIVMDEEGKLCCLHKPG-GSGLTGAKLQDCMSRA 255 Query: 222 RGESNPL 228 + Sbjct: 256 VTRHKEV 262 >UniRef50_A5URV5 Polyribonucleotide nucleotidyltransferase n=11 Tax=Bacteria RepID=PNP_ROSS1 Length = 747 Score = 166 bits (420), Expect = 5e-40, Method: Composition-based stats. Identities = 58/233 (24%), Positives = 95/233 (40%), Gaps = 25/233 (10%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQG 57 R GR +RP+++ GS L G T+VL A++ EE L + Sbjct: 321 RVDGRGPKDIRPISIEVGLIPRVHGSGLFTRGQTQVLTLATLGSPAEEQRLDDLGIETTK 380 Query: 58 WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCD 117 Y P ST G R + L R+L A + K +T+ L + Sbjct: 381 RYIHHYNFPPFSTGEVRRL----GSPRRRDIGHGALAERSLLAVLPSKEEFPYTMRLVSE 436 Query: 118 VLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGE-----AV 172 L ++G + AS+ G+ +AL+DA P+K VA V++G++ G+ + Sbjct: 437 TLSSNGSSSMASVCGSSLALMDA-----------GVPIKAPVAGVAMGLITGKDGRWRVL 485 Query: 173 CDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 D++ +ED + D V T G + +Q + T+E + A AR Sbjct: 486 TDIQGIEDHLGDMDFKVAGTAKG-VTGLQLDIKTTGITYEIMREAFAQAREGR 537 Score = 62.3 bits (150), Expect = 1e-08, Method: Composition-based stats. Identities = 45/219 (20%), Positives = 78/219 (35%), Gaps = 19/219 (8%) Query: 12 RPVTLTRNYT-KHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRST 70 R +TL + A G+V+V +GDT +L TA + +T +Y + Sbjct: 16 RTLTLEAGRFAEQANGAVVVRYGDTMLLATAVASKEPRADADFFP---LTVDYEEKMYAA 72 Query: 71 HTRNARE-AAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTAS 129 +GK + RL R LR E I + + + Sbjct: 73 GKIPGSFFKREGKPTDSAILTARLTDRPLRPLFPEGYRNEVQIIVTTFSIDMVNDPAPLA 132 Query: 130 ITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNV 189 I GA AL + P G V AV VG ++G+ + E + ++ D+ V Sbjct: 133 IIGASAALA-----------ISDIPFLGPVGAVQVGYIDGKVQINPEMPDMPNSDLDLVV 181 Query: 190 VMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 T+D ++ V+ A+ + +L + + Sbjct: 182 AGTKD-AVLMVEAGAKE--LPEDLMLEAIIQGHQVCKQI 217 >UniRef50_B3T6G7 Putative 3' exoribonuclease family, domain 1 n=1 Tax=uncultured marine microorganism HF4000_APKG2H5 RepID=B3T6G7_9ZZZZ Length = 238 Score = 166 bits (420), Expect = 6e-40, Method: Composition-based stats. Identities = 58/220 (26%), Positives = 92/220 (41%), Gaps = 21/220 (9%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGV-PRFLKGQGQGWIT 60 R GR +RP+++ A GS V +G V+ PR + Q + + Sbjct: 16 RMDGRKPADLRPISIEVGVVPVAAGSACVRWGTNHVIAAVYGPMEAHPRKISRQDRAVLD 75 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 Y M P ST R R+ EI ++ + AL + V L+ I ++ ++L Sbjct: 76 VRYNMAPFSTTDRIRPGF-----NRRSREISKVTSDALESVVLLEMYPRSKIRVEIEILC 130 Query: 121 ADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVED 180 A+ GTR +T A VAL A PM MV +V+ G +NG +CDL ED Sbjct: 131 AEAGTRCVGLTAASVALAHA-----------GIPMTDMVVSVASGKINGVVICDLNKEED 179 Query: 181 SAAETDMNVVM-TEDGRIIEVQGTAEGEPFTHEELLILLA 219 + E D+ + M G ++ +Q + + +E Sbjct: 180 NYGEADLPMGMLPNSGDLVFLQMDGD---LSPDEFQQAWD 216 >UniRef50_C1E1G7 Predicted protein n=2 Tax=Micromonas RepID=C1E1G7_9CHLO Length = 838 Score = 166 bits (420), Expect = 6e-40, Method: Composition-based stats. Identities = 52/240 (21%), Positives = 86/240 (35%), Gaps = 28/240 (11%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQ 56 +R GR VRP+T + GS L G+T+ + A++ + L Sbjct: 407 VRQDGRDTKTVRPITCSGGLLPRTHGSSLFTRGETQAIAAATLGGATDAQKVDGLGNDKD 466 Query: 57 GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 Y P S G R + L RAL + FT+ L+ Sbjct: 467 RRFYLHYFFPPSSVGE----TGRVGAASRREVGHGNLAERALMPVIPPYDDFPFTVRLES 522 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGE------ 170 + +++G + A++ +AL DA P+ VA +++G++ G+ Sbjct: 523 TITESNGSSSMATVCAGSLALQDA-----------GVPITRKVAGIAMGLILGDESAGEA 571 Query: 171 --AVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 + D+ ED+ + D V DG I Q + E T L L AR + Sbjct: 572 PVILTDILGSEDALGDMDFKVAGDGDG-ISAFQMDIKVEGITLAVLREALESARVGLVHI 630 Score = 55.8 bits (133), Expect = 1e-06, Method: Composition-based stats. Identities = 42/216 (19%), Positives = 73/216 (33%), Gaps = 21/216 (9%) Query: 13 PVTLTRNYT-KHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTH 71 VT+ + A G+V+V G+T + T V +T Y + Sbjct: 62 EVTVETGRIGRQANGAVMVTEGETVIYATICAGRDVTADGGFVP---LTVNYQERYSAVG 118 Query: 72 -TRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTASI 130 T G I RL+ R LR + + + VL DG T ++ Sbjct: 119 RTAGGYRKRDGGVRENETLIGRLVDRPLRPMIP--KGWAYDTQILEWVLSYDGARSTDAL 176 Query: 131 TGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNG--EAVCDLEYVEDSAAETDMN 188 A+ + P+K +A V VG++ G E + + + + D+ Sbjct: 177 ---------AITAASCAAAISDVPLKKPIAGVRVGLLPGETEPLINPTCEQMERSRLDLV 227 Query: 189 VVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGE 224 + TED + G+ T +E+L + Sbjct: 228 LAGTED---AVMMIEGFGDFLTTQEMLYAIEKGHEA 260 >UniRef50_Q9ZK11 Polyribonucleotide nucleotidyltransferase n=13 Tax=Helicobacter RepID=PNP_HELPJ Length = 688 Score = 166 bits (420), Expect = 6e-40, Method: Composition-based stats. Identities = 46/238 (19%), Positives = 89/238 (37%), Gaps = 29/238 (12%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTK--VLCTASIEEGVPRFLKGQGQG- 57 +RP R+ +VRP+++ N A S+L G T+ V+ ++ + + Sbjct: 313 IRPDKRALEEVRPISIESNLLPMAHSSILFTRGQTQSLVVGVLGMDNDAQTHENLEHKAP 372 Query: 58 ---WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITL 114 Y P ++ G R + L RAL ++ E I L Sbjct: 373 IKERFMFHYNFPPFCVGE----ASSIGATSRRELGHGNLAKRALETSI---KNKEQVIRL 425 Query: 115 DCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGE---- 170 ++L+++G + AS+ +AL + +VA V++G+V+ Sbjct: 426 VSEILESNGSSSMASVCAGSLALY-----------ASGVEIHDLVAGVAMGMVSERQDHA 474 Query: 171 AVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 + D+ +ED+ + D + +G I +Q + E L L A+ + Sbjct: 475 ILSDISGLEDAEGDMDFKIAGNLEG-ITAMQMDTKMSGIQLEVLYQALLQAKRARKHI 531 Score = 67.0 bits (162), Expect = 5e-10, Method: Composition-based stats. Identities = 38/213 (17%), Positives = 71/213 (33%), Gaps = 22/213 (10%) Query: 20 YTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTHTRNARE-A 78 K A S++ G T +L + +E + ++ + Sbjct: 20 VAKQATSSLMYRLGKTLILASVCVEREPVSEDFLP----LVVQFLEKSYAAGKIPGGFVK 75 Query: 79 AKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQAD--GGTRTASITGACVA 136 +G+ + RLI R LR ITL VL D + +++ A Sbjct: 76 REGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITL--MVLNHDIENDLQVSALNAASAT 133 Query: 137 LVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNVVMTEDG- 195 L A P+K V+A + V+ E + + + + D+ V T++ Sbjct: 134 LFLAHIA----------PIKS-VSACRIARVDNEFIINPSASLLNQSSLDLFVSGTKESL 182 Query: 196 RIIEVQGTA-EGEPFTHEELLILLALARGESNP 227 +IE++ + +L L LA+ Sbjct: 183 NMIEMRSLGQKLNALEEPLMLEALELAQKSLKE 215 >UniRef50_A1RXQ5 Ribosomal RNA-processing protein RRP42 n=1 Tax=Thermofilum pendens Hrk 5 RepID=A1RXQ5_THEPD Length = 272 Score = 165 bits (419), Expect = 7e-40, Method: Composition-based stats. Identities = 58/243 (23%), Positives = 95/243 (39%), Gaps = 23/243 (9%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR +Q R + L + A+GS V G T+V+ + G P F +G Sbjct: 25 RLDGRKADQYREIRLEKGIIGKADGSARVFLGSTQVIAGVKLAIGTP-FPDAPNEGVQIV 83 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRA--AVDLKAL------GEFTIT 113 + P ++ G G +E+ R++ R R+ VDL L +T+ Sbjct: 84 NAELSPVASPFFEP-----GPPGEEDIELARVVDRGFRSAKVVDLAKLSIIPSAKCWTLY 138 Query: 114 LDCDVLQADGGTRTASITGACVALVDALQKLVEN--------GKLKTNPMKGMVAAVSVG 165 +D L DG A+ A +AL+D + P+ +V V+V Sbjct: 139 IDIYPLDHDGNLVDAAGLAALLALLDTKLPRTSVQENKIAVLDEKDPLPINTLVVYVTVA 198 Query: 166 IVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 + V D E+ A+ + +TE G I +Q + E F +E+L +A S Sbjct: 199 KIGEYLVVDPTLEEELTADAKITFGITERGEICAIQKSGE-GSFRPDEVLRARDMALKAS 257 Query: 226 NPL 228 + L Sbjct: 258 STL 260 >UniRef50_Q2NEX4 Putative exosome complex, exonuclease 2 subunit n=1 Tax=Methanosphaera stadtmanae DSM 3091 RepID=Q2NEX4_METST Length = 265 Score = 165 bits (418), Expect = 9e-40, Method: Composition-based stats. Identities = 52/244 (21%), Positives = 96/244 (39%), Gaps = 24/244 (9%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R R ++ R +++ NY A+GS +V G T V+ + P G I Sbjct: 22 RIDDRKFSEYRNISIKTNYIGKADGSAMVSIGCTTVIVGVKAQMTTPFN-NAPNSGIIIT 80 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALR--AAVDLKALGE------FTIT 113 +L ++ R G +EI R++ RA+R VDL L + + Sbjct: 81 NTELLAIAS-----RNFEYGPPNKFAVEISRVVDRAIRESPVVDLDKLCVIEGSKSWKLH 135 Query: 114 LDCDVLQADGGTRTASITGACVALVDALQK---------LVENGKLKTNPMKGMVAAVSV 164 +D ++ DG A+ GA AL+ +++ L P+K +V Sbjct: 136 IDMYIVDFDGNIMDAACLGAICALLTTKIPTATSVNGEIVIDEENLTPLPIKNRSILCTV 195 Query: 165 GIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGE 224 +N + + D +E+ ++ ++ EDG + +Q TH+E+ + +A Sbjct: 196 VKINNQLIVDPSKIEEILMDSSVSFGFREDGSLCALQKCGLNT-LTHKEVTKAMKIASIR 254 Query: 225 SNPL 228 + L Sbjct: 255 AKEL 258 >UniRef50_Q965N3 Putative uncharacterized protein n=2 Tax=Caenorhabditis elegans RepID=Q965N3_CAEEL Length = 745 Score = 165 bits (418), Expect = 9e-40, Method: Composition-based stats. Identities = 53/244 (21%), Positives = 93/244 (38%), Gaps = 34/244 (13%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI--------EEGVPRFLK 52 +R GR ++ RP+T+ + K G + + G T+V+ T + + V + L Sbjct: 333 IRCDGRRPDEFRPITIHVDMYKKLHGCSIFQRGQTQVMSTVTFDSPAAAFHPDSVAQLLG 392 Query: 53 GQGQGWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTI 112 Q + Y + + R + L ++L+ + Sbjct: 393 SQRKKSFMLHYEFPGFAINEF----GTTRSLNRREIGHGALAEKSLKNLFPAD--FPYAT 446 Query: 113 TLDCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGE-- 170 L C VL+++G + AS+ G +AL DA PMK A V++G+++ E Sbjct: 447 RLACQVLESNGSSSMASVCGGSLALFDA-----------GVPMKNAAAGVAIGLISDEAE 495 Query: 171 ------AVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGE 224 + D+ +ED A + D V T DG Q + T +L L AR Sbjct: 496 PETKYRVLTDILGIEDYAGDMDFKVAGTRDG-FTAAQLDVKNGGLTRRQLTESLQAARAG 554 Query: 225 SNPL 228 + + Sbjct: 555 IDHV 558 Score = 63.5 bits (153), Expect = 5e-09, Method: Composition-based stats. Identities = 35/217 (16%), Positives = 64/217 (29%), Gaps = 18/217 (8%) Query: 14 VTLTRNYTKHAEGSVLV-EFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTHT 72 + L + S +V FGD V+ T + EY + Sbjct: 38 IELKAGHLARFASSTVVASFGDNAVMATV---VQRKSKQGDGSGVPLQVEYRPSASAIGR 94 Query: 73 RNAREAAKG-KQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTASIT 131 + Q + I R I R++R + + E I L + I Sbjct: 95 IPTNFLRRELSQSDNEILISRAIDRSIRPLLPGNSY-ETQIICKPLALDENADQIMLGIN 153 Query: 132 GACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNVVM 191 A AL + + P+ + A + G+ + E A ++ V M Sbjct: 154 AASTAL------QISSAAYNG-PLAALRVARTA---RGDFHVNPTQEELREASLNLIVAM 203 Query: 192 TEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 + + + ++ + E L L +A L Sbjct: 204 RKHEKTVMIELDGRES--SAEHLEHALDVAFRHVAKL 238 >UniRef50_Q4JV61 Polyribonucleotide nucleotidyltransferase n=37 Tax=Actinobacteria (class) RepID=PNP_CORJK Length = 764 Score = 165 bits (418), Expect = 1e-39, Method: Composition-based stats. Identities = 51/242 (21%), Positives = 90/242 (37%), Gaps = 30/242 (12%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIE----EGVPRFLKGQGQ 56 R GR + +R + + A GS L E G+T++L +++ E L + Sbjct: 377 FRIDGRDSTTIRDLGIVVQLIPRAHGSALFERGETQILGVTTLDMLKMEQQIDSLGPETS 436 Query: 57 GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 Y P ST G R + L RAL + + +TI Sbjct: 437 KRYIHHYNFPPYSTGE----TGRVGSPKRREIGHGALAERALTPVIPSRDDFPYTIRQVS 492 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEA----- 171 + L ++G T S+ + ++L +A P+K VA +++G+V G+ Sbjct: 493 EALSSNGSTSMGSVCASTLSLYNA-----------GVPLKAPVAGIAMGLVTGKVGKAGK 541 Query: 172 -----VCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESN 226 + D+ ED+ + D V T D + +Q + + + L L AR Sbjct: 542 DKYVTLTDILGAEDAFGDMDFKVAGTPD-FVTALQLDTKLDGIPSDVLAEALQQARTARL 600 Query: 227 PL 228 + Sbjct: 601 EI 602 >UniRef50_B7GNH2 Polyribonucleotide nucleotidyltransferase n=30 Tax=Actinobacteridae RepID=PNP_BIFLI Length = 914 Score = 165 bits (418), Expect = 1e-39, Method: Composition-based stats. Identities = 47/239 (19%), Positives = 89/239 (37%), Gaps = 28/239 (11%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIE----EGVPRFLKGQGQG 57 R GR +R ++ + GS L + G+T++L ++ E L G Sbjct: 346 RIDGRGLRDIRTLSAEVDIVPRVHGSALFQRGETQILGVTTLNMLKMEQQIDALSGPQSK 405 Query: 58 WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCD 117 Y M P ST G R + L +AL + + + I + Sbjct: 406 RYMHNYEMPPYSTGE----TGRVGSPKRREIGHGALAEKALVPVLPSREEFPYAIRQVSE 461 Query: 118 VLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEA------ 171 + ++G T S+ + ++L+ A P+K VA +++G+V+G+ Sbjct: 462 AIGSNGSTSMGSVCASTLSLLAA-----------GVPLKAPVAGIAMGLVSGDVDGQHIF 510 Query: 172 --VCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 + D+ ED+ + D V T + I +Q + + + L L A+ + Sbjct: 511 KTLTDILGAEDAFGDMDFKVAGTSE-FITALQLDTKLDGIPADILAAALQQAKEARATI 568 Score = 42.7 bits (99), Expect = 0.010, Method: Composition-based stats. Identities = 27/185 (14%), Positives = 59/185 (31%), Gaps = 21/185 (11%) Query: 12 RPVTLTRNYTKH-AEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRST 70 R + A+G+V D ++ + + P+ + E M + Sbjct: 21 RTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENYDFFPLTVDVEEKMYA-AG 79 Query: 71 HTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTA-- 128 + +G+ + R+I R LR + + VL A Sbjct: 80 KIPGSFFRREGRPSSEAILACRIIDRPLRPLFPHTL--RNEVQVVETVLAV--NPDDAYD 135 Query: 129 --SITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETD 186 ++ A + + + P +G V+ V + +++G+ V + E A + Sbjct: 136 VIALNAASASTM-----------ISGLPFEGPVSGVRLALIDGQWVAFPRWSERERAVFE 184 Query: 187 MNVVM 191 + V Sbjct: 185 IVVAG 189 >UniRef50_A0LV20 Polyribonucleotide nucleotidyltransferase n=63 Tax=Actinobacteria (class) RepID=PNP_ACIC1 Length = 782 Score = 165 bits (418), Expect = 1e-39, Method: Composition-based stats. Identities = 46/240 (19%), Positives = 88/240 (36%), Gaps = 28/240 (11%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIE----EGVPRFLKGQGQ 56 +R GR +RP+T GS L E G+T++L ++ E + + + Sbjct: 338 VRIDGRGLTDIRPLTAEVGIVPRVHGSALFERGETQILGVTTLNMLRMEQQLDTVSPRTK 397 Query: 57 GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 Y P ST G R + L RAL + + + I Sbjct: 398 KRYMHHYNFPPYSTGEV----GRVGSPKRREIGHGALAERALIPVLPSREEFPYAIRQVS 453 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEA----- 171 + + ++G T S+ + ++L++A P++ VA +++G+++ Sbjct: 454 EAIGSNGSTSMGSVCASTLSLLNA-----------GVPLRAPVAGIAMGLISDTVDGETH 502 Query: 172 ---VCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 + D+ ED+ + D V T D + +Q + + L L AR + Sbjct: 503 YVTLTDILGAEDAYGDMDFKVAGTRD-FVTALQLDTKLDGIPASVLAAALPQAREARLTI 561 Score = 50.8 bits (120), Expect = 3e-05, Method: Composition-based stats. Identities = 40/211 (18%), Positives = 66/211 (31%), Gaps = 20/211 (9%) Query: 11 VRPVTLTRNYT-KHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRS 69 VR V + A GS + GDT VL + + +T + + Sbjct: 20 VRTVRFETGRLARQAGGSAVAYLGDTMVLSATTASKEPREQFDFFP---LTVDVEERLYA 76 Query: 70 THTRNAREAAK-GKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTA 128 + G+ + RLI R LR + +K L + + Sbjct: 77 AGRIPGSFFRREGRPSEEAILTCRLIDRPLRPSF-VKGLRNEVQVVVTVLAVDPEHLYDV 135 Query: 129 -SITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDM 187 +I A ++ + A P G + V + ++G V Y E A DM Sbjct: 136 VAINAASMSTLLA-----------GLPFSGPIGGVRMAHIDGTWVAFPTYSELERATFDM 184 Query: 188 NVV--MTEDGRIIEVQGTAEGEPFTHEELLI 216 V + DG + + AE T + Sbjct: 185 VVAGRVLPDGDVAIMMVEAEATEETIPLIRE 215 >UniRef50_C7DI01 3' exoribonuclease n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DI01_9EURY Length = 246 Score = 165 bits (417), Expect = 1e-39, Method: Composition-based stats. Identities = 55/229 (24%), Positives = 93/229 (40%), Gaps = 20/229 (8%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEG-VPRFLKGQGQGWIT 60 R GR N++RP+ + +A GS +E+G+ KVL + PR L + I Sbjct: 16 RLDGRDFNELRPLKIEAGILANANGSAYLEWGNNKVLAAVYGPKEATPRHLADTNKAIIK 75 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 Y M P S+ + R R +EI ++ V L+ I + ++LQ Sbjct: 76 CRYSMAPFSSMGDHGRSG----PNRRAIEISKVTKEVFENVVMLEEFPGSEIEIFIEILQ 131 Query: 121 ADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVED 180 +DGGTR + +K MV AVS G ++ V D+ +ED Sbjct: 132 SDGGTR-----------AAGITAAAVALANAGIHVKDMVYAVSAGRIDEHVVIDVNMIED 180 Query: 181 SAAETDMNV-VMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 + ++ DM V + +D ++ +Q FT E+ + + + Sbjct: 181 NYSDADMPVSISPKDNSVLLLQMDG---GFTKEQFGEAMKMILESGKVI 226 >UniRef50_A9A5D0 3' exoribonuclease n=4 Tax=Thaumarchaeota RepID=A9A5D0_NITMS Length = 272 Score = 165 bits (417), Expect = 1e-39, Method: Composition-based stats. Identities = 51/244 (20%), Positives = 90/244 (36%), Gaps = 24/244 (9%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR+ ++ R V++ N A GS V GDT+V+C I+ P F +G Sbjct: 24 RVDGRALDESREVSIETNAIPKANGSARVRLGDTEVVCGVKIQPDRP-FPDTGDKGLFIC 82 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRA--------AVDLKALGEFTIT 113 +LP S T G G +E+ R++ R +R V K + Sbjct: 83 TAELLPLSHPTVE-----TGPPGPEVIELARVVDRGIRESHMIDVSQLVIEKDKSVIGVF 137 Query: 114 LDCDVLQADGGTRTASITGACVALVDALQKLVENGKLKT---------NPMKGMVAAVSV 164 D V+ DG A A AL+ + P+ + +V++ Sbjct: 138 ADNVVVDYDGNLFDACSYAATAALLSSKSPKWNWVDDAPALVEGEEVDVPITTIPVSVTM 197 Query: 165 GIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGE 224 G + + D E ++ + + + DG I +Q + FT +E++ ++ Sbjct: 198 GKIGNHIIVDPNGDEWASMDARITITSDSDGNICALQKGGDDG-FTQDEIVQCGEISVRV 256 Query: 225 SNPL 228 + Sbjct: 257 GAKI 260 >UniRef50_B9XS52 Polyribonucleotide nucleotidyltransferase (Fragment) n=1 Tax=bacterium Ellin514 RepID=B9XS52_9BACT Length = 664 Score = 164 bits (414), Expect = 3e-39, Method: Composition-based stats. Identities = 49/239 (20%), Positives = 84/239 (35%), Gaps = 32/239 (13%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFL-----KGQGQ 56 R GR + +R + A GS L G+T+ + A++ G G + Sbjct: 217 RMDGRPLDGIRAIHSEAGILPRAHGSALFSRGETQTVALATLGTGEDAQEFDSYTGGSNE 276 Query: 57 GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 Y S G R + L R++ + L + I + Sbjct: 277 KKFILHYNFPNYSVGE----TGRISGPGRREIGHGALAERSIEPMIPLDKYP-YAIRVTS 331 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVN-------- 168 ++++++G T AS+ G +AL+DA PM VA +S+G+ Sbjct: 332 EIMESNGSTSMASVCGGTLALMDA-----------GVPMIRPVAGISIGMCTEHDAVDKI 380 Query: 169 --GEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 + + D+ ED + D + TE G I Q + H+ + L AR Sbjct: 381 SAYKLLSDIIGAEDGFGDMDCKIAGTEKG-ITGFQLDLKLRGIPHDMMAETLEKARVAR 438 Score = 47.7 bits (112), Expect = 3e-04, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 47/119 (39%), Gaps = 16/119 (13%) Query: 112 ITLDCDVLQADGGTRT--ASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNG 169 + + VL ADG SI GA +L+ + P G + A+ + VNG Sbjct: 11 VQVQTVVLSADGENDPDILSIIGASASLM-----------VSDIPWAGPLGALRIARVNG 59 Query: 170 EAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 + + + E + ++ D+ V E I+ +G E + E+ L + PL Sbjct: 60 KFIAIPTHAEMAESDLDLIYVGNE-NDIVMFEGAGEE--ISEEDFKAALKFGQDCCKPL 115 >UniRef50_O26778 Probable exosome complex exonuclease 2 n=5 Tax=Methanobacteriaceae RepID=ECX2_METTH Length = 271 Score = 163 bits (413), Expect = 4e-39, Method: Composition-based stats. Identities = 54/244 (22%), Positives = 101/244 (41%), Gaps = 24/244 (9%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GRS ++ R +++ AEGS V+ G+T+++ + G P F G I Sbjct: 25 RIDGRSLHEFRDISIETGVISKAEGSSRVKLGNTQIIVGVKPQIGEP-FPDTPEMGVILT 83 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRA--AVDLKALG------EFTIT 113 +LP ++ T G R++E+ R++ R +R +DL+ L + + Sbjct: 84 NSELLPMASPTFEP-----GPPDERSVELSRVVDRCIRESRMIDLEKLCIIEGSKVWMLF 138 Query: 114 LDCDVLQADGGTRTASITGACVALVDALQKLVENGKLK---------TNPMKGMVAAVSV 164 LD ++ DG A++ AL+D E + P+ + Sbjct: 139 LDLHIIDYDGNLFDAAVLATVAALLDTRIPAAEVEDGEVVINREKMQPLPVNRKALMCTF 198 Query: 165 GIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGE 224 + E V D E+ +++ +TE+G I +Q E P T +++L +++A + Sbjct: 199 AKIGNEIVLDPSLEEEDILTARISIGVTEEGSICAMQKGGE-GPLTRDDVLKAVSIAVEK 257 Query: 225 SNPL 228 L Sbjct: 258 VPQL 261 >UniRef50_Q6CA11 YALI0D06776p n=12 Tax=Saccharomycetales RepID=Q6CA11_YARLI Length = 287 Score = 163 bits (412), Expect = 4e-39, Method: Composition-based stats. Identities = 57/229 (24%), Positives = 92/229 (40%), Gaps = 19/229 (8%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKH-AEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWI 59 +R GR N++R N A+GS VE+G TKV+CT + I Sbjct: 58 LRTDGRRWNEIRNFDCKINTHPTSADGSSYVEWGHTKVVCTVDGPREPDNRQNTTDRAVI 117 Query: 60 TAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVL 119 + + ST TR R+ + R E+ LI + L AV K I ++ V+ Sbjct: 118 SVNVNVASFSTETRIKRQ----RNDKRLAEMNILIRQLLEEAVLTKLNPRTQIAVNITVI 173 Query: 120 QADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVE 179 DGG A I AC+A++DA P+ V+A S G+ + A+ DL +E Sbjct: 174 AQDGGLLPACINAACLAMIDA-----------GVPLTDYVSACSSGVYSNNALIDLNTLE 222 Query: 180 DSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 + V+ + +I + L +LA + ++ + Sbjct: 223 EQDVPFLTIGVIGKSDKISMLTL---ETQLPMASLEPVLATSLSGAHAI 268 >UniRef50_Q469M2 Ribosomal RNA-processing protein RRP42 n=5 Tax=Archaea RepID=Q469M2_METBF Length = 260 Score = 163 bits (412), Expect = 4e-39, Method: Composition-based stats. Identities = 63/237 (26%), Positives = 100/237 (42%), Gaps = 17/237 (7%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR R + L N AEGS V GDT+VL ++ G P F Q +G I Sbjct: 22 RQDGRGFKDFRDIKLETNVIPKAEGSAKVTLGDTQVLVGVKLQPGTP-FPDSQDEGVIIT 80 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRA--AVDLKALG------EFTIT 113 + P ++ G +E+ R++ R +R A+D+K L + Sbjct: 81 NLELNPIASPEFEP-----GPPREEAIEMARVVDRGIRESGAIDIKKLCISVGESVWIAY 135 Query: 114 LDCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNP--MKGMVAAVSVGIVNGEA 171 +D VL DG AS A AL+ + ++G P MK M V++ + + Sbjct: 136 IDVHVLNDDGNIIDASSLAAIAALMTTIVPNEQHGIGADVPLAMKEMPVGVTLAKIGSKL 195 Query: 172 VCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 + D E + ET + VV + DG + +Q PFT E+L + +A ++ + Sbjct: 196 MVDPSLDEGAVCETKLTVVSSSDGSVAGMQKMGTV-PFTEAEVLEAIDMACEKAAEI 251 >UniRef50_D2UZQ3 3'-5' exoribonuclease/RNA-binding protein-like protein n=1 Tax=Naegleria gruberi RepID=D2UZQ3_NAEGR Length = 300 Score = 162 bits (410), Expect = 8e-39, Method: Composition-based stats. Identities = 46/233 (19%), Positives = 88/233 (37%), Gaps = 20/233 (8%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVE-FGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 R R+ ++ R V + K A GS +E TKV+C+ + + G I Sbjct: 65 RQDNRTCDKFRNVFMQVGVIKQARGSAYMEYQNGTKVICSVYGPRQISARNEFSDIGAIQ 124 Query: 61 AEYGMLPR----STHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 EY + S + + +E + AL ++ L + I + C Sbjct: 125 CEYRVANFAYQSSNNQSTFLNNSSNNNRRHHVENSIHLREALEVSIRLDKYPKSVIDVYC 184 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLE 176 +LQ DG +A+I+ A +AL +A M MV+A + + G + D Sbjct: 185 FILQDDGSALSAAISCASLALANA-----------GIEMYDMVSACTTSELEGHIIVDPT 233 Query: 177 YVEDSAAETDMNVV-MTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 +E A M M+ ++ ++ + +++++ + L + L Sbjct: 234 NLEYKYASGGMVCAYMSNLNQVTQLSQVGD---MSYQKIGEAMDLCIDGCSKL 283 >UniRef50_D0NP71 Exosome complex exonuclease MTR3-like protein n=1 Tax=Phytophthora infestans T30-4 RepID=D0NP71_PHYIN Length = 252 Score = 162 bits (409), Expect = 1e-38, Method: Composition-based stats. Identities = 53/228 (23%), Positives = 87/228 (38%), Gaps = 22/228 (9%) Query: 2 RPA-GRSN-NQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEE-GVPRFLKGQGQGW 58 R R++ +++R + A GS VE G T+VLC + G Sbjct: 26 RLDKSRTSSDEMRRPFMQLGAVSGAAGSAYVELGRTRVLCAVYGPRTDTRARREFSKDGQ 85 Query: 59 ITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDV 118 + + P + + + Q ME+ ++ AL AV L L + I++ + Sbjct: 86 LVCDVKYAPFA----DKLTRRERGQDPDEMELSAIVEEALAPAVMLHKLPKCIISVFVTI 141 Query: 119 LQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYV 178 L+ DGG A++ A +AL DA M +V A S GIVNG V D Sbjct: 142 LEDDGGVLAAALNCASLALADAA-----------VEMYDVVTASSAGIVNGSVVLDPSRE 190 Query: 179 EDSAAETDMNVV-MTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 E+ + + + M GR+ + + H +L + L Sbjct: 191 EEQRGDGKLALAYMPSMGRVTYMLQAGK---IHHTQLQEAVDLCTDAC 235 >UniRef50_B3TBC7 Putative 3' exoribonuclease family, domain 1 n=1 Tax=uncultured marine crenarchaeote HF4000_APKG8O8 RepID=B3TBC7_9ARCH Length = 273 Score = 161 bits (408), Expect = 1e-38, Method: Composition-based stats. Identities = 48/244 (19%), Positives = 90/244 (36%), Gaps = 24/244 (9%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR+ ++ RP+++ HA GS V GDT+V+ I+ P F +G Sbjct: 24 RIDGRALDEHRPLSIDVGVIPHANGSARVRLGDTEVVAGVKIQPDRP-FPDMGEKGIFIC 82 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRA--------AVDLKALGEFTIT 113 +LP + + G +EI R++ R +R V +K + Sbjct: 83 TAEILPLAHPSVE-----TGPPQPYVIEIARVVDRGIRESGMIDLSQMVLVKDKSVIGLF 137 Query: 114 LDCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTN---------PMKGMVAAVSV 164 D V DG A + A++ + E K P+ + +V++ Sbjct: 138 ADNVVTDHDGNLFDACSYASTAAVLTSKMPKWEMKDDKPVLVDGEESDTPITTIPVSVTM 197 Query: 165 GIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGE 224 G++ + D E + + + DG I+ +Q F+ ++L+ L+ Sbjct: 198 GLIGEYIIVDPNLDEWECLDARITITTNSDGNIVALQKGGSSG-FSLDQLIKCSELSIST 256 Query: 225 SNPL 228 + Sbjct: 257 GPEI 260 >UniRef50_A2RVK7 At4g27490 n=9 Tax=Magnoliophyta RepID=A2RVK7_ARATH Length = 256 Score = 161 bits (408), Expect = 1e-38, Method: Composition-based stats. Identities = 49/228 (21%), Positives = 85/228 (37%), Gaps = 23/228 (10%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 RP GR +Q RP L A GS EFG+TKV+ + + + G + Sbjct: 34 RPDGRGFHQCRPALLQTGAVSSASGSAYAEFGNTKVIVSVFGPRESKKAMVYSDVGRLNC 93 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQA 121 ++ T QG E ++ +AL + ++ + T+ + VL++ Sbjct: 94 NVSYTNFASPTLG--------QGTDHKEYSSMLHKALEGVIMMETFPKTTVDVFALVLES 145 Query: 122 DGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDS 181 G + I+ A +AL DA M ++ AVSV + + D E+ Sbjct: 146 GGSDLSVLISCASLALADA-----------GIMMYDLITAVSVSCIGKSLMIDPVTEEEG 194 Query: 182 AAETDMNV-VMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 + + M I ++ T E +T + + L S+ L Sbjct: 195 CEDGSFMMTCMPSRYEITQLTITGE---WTTPNINEAMQLCLDASSKL 239 >UniRef50_Q4SLK0 Chromosome 15 SCAF14556, whole genome shotgun sequence n=3 Tax=Tetraodontidae RepID=Q4SLK0_TETNG Length = 291 Score = 161 bits (407), Expect = 2e-38, Method: Composition-based stats. Identities = 55/274 (20%), Positives = 89/274 (32%), Gaps = 67/274 (24%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVP------------- 48 R GR ++R + A+GS +E G+TK L V Sbjct: 13 RIDGRKATELRKIQARMGVFAQADGSAYLEQGNTKALAVVYGPHEVCVCVCVCVCVCVCQ 72 Query: 49 ----RFLKGQGQGWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDL 104 R + I +Y M ST R R ++ E+ + + AAV Sbjct: 73 MRGSRSRARHDRAVINCQYSMATFSTAERKRRPHG----DRKSTEMSLHLKQTFEAAVMT 128 Query: 105 KALGEFTITLDC-------------------------------DVLQADGGTRTASITGA 133 + I + +LQ+DGG + + A Sbjct: 129 QLFPRSQIDIYVKVGLVLMFSLLESRLSQAFYLSVMDKDPPCLQILQSDGGNYSVCVNAA 188 Query: 134 CVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNVV-MT 192 +A++DA PM+ V A +VG V+ + DL Y E+S + + + + Sbjct: 189 TLAVIDA-----------GIPMRDYVCACTVGFVDETPLADLCYAEESGGVSSLGLALLP 237 Query: 193 EDGRIIEVQGTAEGEPFTHEELLILLALARGESN 226 G+I VQ A + L L+ A Sbjct: 238 RGGQIALVQMDAR---LHQDNLDALMEAAMTACK 268 >UniRef50_C3XH48 Polyribonucleotide nucleotidyltransferase n=1 Tax=Helicobacter bilis ATCC 43879 RepID=C3XH48_9HELI Length = 734 Score = 161 bits (407), Expect = 2e-38, Method: Composition-based stats. Identities = 52/236 (22%), Positives = 90/236 (38%), Gaps = 28/236 (11%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQG 57 R GR+ ++R +++ N GS G T+ L T ++ + + QG+ Sbjct: 353 RADGRALREIREISIESNLLPKTHGSACFTRGQTQALVTCTLGSQNDAQTQEGILTQGKS 412 Query: 58 WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCD 117 I Y P S G R + L +A+ + V A TI L + Sbjct: 413 KIIFHYNFPPFSVGEAYP----IGASSRRELGHGNLALKAIESNV---ANTPHTIRLVSE 465 Query: 118 VLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGE-----AV 172 +LQ++G + AS+ GA +AL+ A M MVA +++G++ + Sbjct: 466 ILQSNGSSSMASVCGASLALLGA-----------DIKMHNMVAGIAMGLIYESEERFAIL 514 Query: 173 CDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 D+ +ED + D + E G +Q + + L L AR + Sbjct: 515 SDIMGLEDFDGDMDFKIAGNEKG-FSALQLDIKIHGLSESILNQSLEQAREGILHI 569 Score = 55.0 bits (131), Expect = 2e-06, Method: Composition-based stats. Identities = 36/219 (16%), Positives = 74/219 (33%), Gaps = 27/219 (12%) Query: 24 AEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTHTRNAREAAK-GK 82 A+ SV+++ G + +LC+ ++ P ++ +Y + K GK Sbjct: 52 ADRSVMLKVGGSVLLCSVCVDYENPSSEDFLP---LSVQYVEKMYAIGKIPQGFLKKEGK 108 Query: 83 QGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTA--SITGACVALVDA 140 + I RLI R+LR + + + V+ D ++ A + L + Sbjct: 109 PSDNEILISRLIDRSLRPLFP--KDYPYPVQITILVMSYDNKIDICQKAMNLASICLYLS 166 Query: 141 LQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEV 200 L + G L + S+ DL + +S + + + +IE+ Sbjct: 167 SIPLTQKGILNGIRVMRRDDEFSLCD-------DLNDLLESKLD-LFVSGINNNVSMIEM 218 Query: 201 QGTAEGE-----------PFTHEELLILLALARGESNPL 228 Q + +LL + LA+ + Sbjct: 219 QSLKTTTQNKDSIIENANEISKNDLLEAINLAKKHIETM 257 >UniRef50_UPI0001925525 PREDICTED: similar to predicted protein n=1 Tax=Hydra magnipapillata RepID=UPI0001925525 Length = 258 Score = 161 bits (407), Expect = 2e-38, Method: Composition-based stats. Identities = 49/229 (21%), Positives = 81/229 (35%), Gaps = 25/229 (10%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR N++RP+ L A GS VE DTK++C P+ + +G I Sbjct: 35 RQDGRGENEIRPMYLKAGTIHQANGSSYVETCDTKLICAVYGPRDNPKRHQFSSKGNIFC 94 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQA 121 E P S H R Q + E I +A +AV L++ + I + ++L+ Sbjct: 95 EVTFAPFSWHER------VSNQDSLSKEYSSAIVQAFESAVCLESYPKAQIDIYINILEY 148 Query: 122 DGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNG----EAVCDLEY 177 G + + A +AL DA M +V + N D Sbjct: 149 SGNCLSYAFIAASIALADA-----------GIEMLDLVTSCESAFSNETSIQRVCVDPSG 197 Query: 178 VEDSAAETDMNVV-MTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 E S + + + M +I + E T ++ + + Sbjct: 198 EEVSLCKGRVVIAYMPSLNKISYLSMQGEE---TIDDSMQNVITCIEGC 243 >UniRef50_Q8ZVN0 Probable exosome complex exonuclease 2 n=5 Tax=Thermoproteaceae RepID=ECX2_PYRAE Length = 274 Score = 160 bits (406), Expect = 2e-38, Method: Composition-based stats. Identities = 51/246 (20%), Positives = 90/246 (36%), Gaps = 28/246 (11%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR Q R V + K A+GS V+ G T V+ + G P F +G + Sbjct: 29 RVDGRGPEQTRNVEINVGVVKTADGSAEVKLGKTHVVAGVKVGLGQP-FPDAPDEGVLVV 87 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAA-------VDLKALGEFTITL 114 +LP ++ G +E+ R++ R +R + ++ + + + Sbjct: 88 NAEVLPHASP-----YTEVGPPDEFAIELARVVDRGIRHCGYVDFKKLAVEGGKAYVLWI 142 Query: 115 DCDVLQADGGTRTASITGACVALVDALQKLVENGKLK------------TNPMKGMVAAV 162 D V+ DG + + AL + +V + + AV Sbjct: 143 DLYVINDDGNLIDVANLASVAALKNTQLPVVVKDEAGVVKLDRNNKAPLPVDISKAPIAV 202 Query: 163 SVGIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALAR 222 SVG + D + E+ + + + +ED +I+ Q T FT E+ L LA Sbjct: 203 SVGKIGNVLFLDPTFEEELSLDGRITFTFSED-KIVAAQKT--LGYFTQSEIEAALNLAL 259 Query: 223 GESNPL 228 + L Sbjct: 260 RGRDRL 265 >UniRef50_B8C7U5 Putative uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana CCMP1335 RepID=B8C7U5_THAPS Length = 659 Score = 160 bits (406), Expect = 3e-38, Method: Composition-based stats. Identities = 59/234 (25%), Positives = 97/234 (41%), Gaps = 22/234 (9%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHA-EGSVLVEFGDTKVLCTASI---EEGVPRFLKGQGQ 56 +R GR N VRP++ T GS G+T+V+CTASI +GVP Sbjct: 267 LRADGRGTNAVRPISATTPIFPDCVHGSSQFSRGETQVICTASIGAPSDGVPHASPYSDS 326 Query: 57 GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 Y ST T ++ + R + L +A+ + + + L C Sbjct: 327 SAF-LHYDFPDFSTGTVKSK--GESSANRRAIGHGNLAEKAVLPVLPNIHDFPYAVRLTC 383 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNG--EAVCD 174 +V ++G + A+ G+ +AL+DA P+ VA VSVG+ + D Sbjct: 384 EVTSSNGSSSMAAACGSTLALLDA-----------GVPLVSPVAGVSVGLTPDSKTLLLD 432 Query: 175 LEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 + ED + D V T G ++ +Q + P T + + L+LA+ N + Sbjct: 433 ITGTEDHYGDMDFKVCGTSGG-VLSMQLDVKN-PVTMKVIASALSLAKDGRNAI 484 Score = 40.8 bits (94), Expect = 0.040, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 49/158 (31%), Gaps = 28/158 (17%) Query: 74 NAREAAKGKQGGRTMEIQRLIARALRAAVDLKALG-------EFTITLDCDVLQADGGTR 126 R G R + R+I R +R + + I ++C+V D +R Sbjct: 21 RRRRDNSGPLTDREVLASRVIDRTIRPWLMMGLASSDKAISLPGNIVVNCEVQSYD--SR 78 Query: 127 TASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETD 186 +SI G K P+K +G V D E A+ + Sbjct: 79 ASSING----------------KKFPVPLKAAACVKLAIQRDGSVVYDPSPNESEDAKFE 122 Query: 187 MNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGE 224 + T+D + E + + L LA+ Sbjct: 123 LLYAGTKDR---VLMLEFEDPGVSETTVANALMLAQEA 157 >UniRef50_B0WG77 Polyribonucleotide nucleotidyltransferase 1, mitochondrial n=2 Tax=Diptera RepID=B0WG77_CULQU Length = 759 Score = 160 bits (404), Expect = 4e-38, Method: Composition-based stats. Identities = 47/236 (19%), Positives = 84/236 (35%), Gaps = 16/236 (6%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQ------- 54 R GR + +R ++ + N K GS L + G T+V T +++ Sbjct: 359 RCDGRYLDDLRKISSSVNMHKPLHGSALFQRGQTQVFATVALDSQESALKLDPITSLDMG 418 Query: 55 -GQGWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTIT 113 Y P +T G G R + L + L + FTI Sbjct: 419 VKSKNFFLHYEFPPYATGE----TGKIGPVGRREIGHGALAEKGLLPIIPNDN--PFTIR 472 Query: 114 LDCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTN-PMKGMVAAVSVGIVNGEAV 172 L +VL+++G + A++ +AL+DA + E M + + + + Sbjct: 473 LTAEVLESNGSSSMATVCAGSMALMDAGIPVQEAAAGVAIGLMTKYENNDTKHLQDYRIL 532 Query: 173 CDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 DL +ED + DM V T G + +Q + + ++ L A + Sbjct: 533 TDLLGIEDYLGDMDMKVAGTRRG-MTAIQADIKVPGIPLKVVMESLQKAMEARFKI 587 Score = 85.8 bits (211), Expect = 9e-16, Method: Composition-based stats. Identities = 40/219 (18%), Positives = 77/219 (35%), Gaps = 16/219 (7%) Query: 12 RPVTLTRN-YTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRST 70 R V ++ Y + A+G +V GDT V+ TA P + +Y + Sbjct: 52 RVVRISSGKYARFADGCSVVTVGDTAVMVTAVA-RQKPAGGSNASFLPLVVDYRQKAAAA 110 Query: 71 HTRNAREAAKG-KQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTAS 129 + + + RL+ R++R + + + + + + + Sbjct: 111 GRIPTNFLRREMGPSEKEILAARLVDRSMRPLFPAEFRCDTQLVCNMLAIDSSNLPDVQA 170 Query: 130 ITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNV 189 I A AL L P G V AV VG+V+ E + + E + D+ V Sbjct: 171 INAASAAL-----------SLSDIPWNGPVGAVRVGLVDNEIIINPTRKELQLSALDLVV 219 Query: 190 VMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 T+ ++ ++ G EL + + E+ + Sbjct: 220 SATKQNLVVMLE--GRGNIVNENELRMAIKKGTQEAQLI 256 >UniRef50_D2V2H2 Predicted protein n=1 Tax=Naegleria gruberi RepID=D2V2H2_NAEGR Length = 289 Score = 160 bits (404), Expect = 4e-38, Method: Composition-based stats. Identities = 42/244 (17%), Positives = 79/244 (32%), Gaps = 23/244 (9%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGD-TKVLCTASIEEGVPRFLKGQGQGWI 59 MR GR+ R +L GS V+ + T VL +E G QG + Sbjct: 20 MRNDGRARLDYRDFSLETGIVSQTNGSARVKLANHTDVLVGVKVEIGE-VDQDFPDQGRL 78 Query: 60 TAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARAL----RAAVDLKALGEFTITLD 115 P + + R A + ++ + + +K + + +D Sbjct: 79 EVHVECSPSANNEFEGRGAEEINA-ELISTLRNQLKNSFAVDWTKLCIVKGKQCWILYVD 137 Query: 116 CDVLQADGGTRTASITGACVALVDALQKLVENGKLKT----------------NPMKGMV 159 C VL + G A AL + +E ++ + Sbjct: 138 CIVLDSAGNLFDALAIATRAALYNTRIPKIEVMEISPTETEFEVSDDPHEYSRIDCSNIP 197 Query: 160 AAVSVGIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLA 219 +V++G + + + D E+ M V + + G I ++ + + EL +L Sbjct: 198 ISVTLGKIGSKFIVDPSLEEEECISNRMTVSVNKKGHICSIKKSGKDSGVNPSELTKMLQ 257 Query: 220 LARG 223 AR Sbjct: 258 TARK 261 >UniRef50_C1EGG8 Predicted protein n=2 Tax=Micromonas RepID=C1EGG8_9CHLO Length = 791 Score = 159 bits (403), Expect = 5e-38, Method: Composition-based stats. Identities = 46/242 (19%), Positives = 90/242 (37%), Gaps = 31/242 (12%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQG 57 R GR ++R + N GS + E G+T+ L T +I + G Sbjct: 360 RVDGRGIRELRQLGAESNVLPVVHGSSIFERGNTQALATVTIGKLIDAQKLDAPVGPDNR 419 Query: 58 WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCD 117 + Y S + +G R + L ++L + F + ++ + Sbjct: 420 RMMLHYSFPSFSINE----TPRRGGLSRREIGHGALAEKSLAGIIPAAKEWPFAVRINAE 475 Query: 118 VLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV---------- 167 ++++G + A++ +AL+DA P+K V A+SVG+V Sbjct: 476 TMESNGSSSMAAVCSGSLALMDA-----------GVPIKEHVGAISVGLVMDEDEQTGKV 524 Query: 168 -NGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESN 226 E + D+ +ED + D + T G I +Q + + L+ + +A + Sbjct: 525 TRYELLSDIMGLEDVLGDMDFKIAGTRGG-ITGIQLDCKPAGIPLDILIEAMDVASIARS 583 Query: 227 PL 228 + Sbjct: 584 AV 585 Score = 62.0 bits (149), Expect = 2e-08, Method: Composition-based stats. Identities = 37/224 (16%), Positives = 73/224 (32%), Gaps = 24/224 (10%) Query: 13 PVTLTRNYTKH-AEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWI--TAEYGMLPRS 69 V +G+++ GD++V+C A + G+ +Y + Sbjct: 50 RVGFETGRVARLTDGAIVASMGDSRVICAAVCSRD-----ENPDAGFFPLQVDYRERHSA 104 Query: 70 THTRNAR-EAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTA 128 +G R + R++ RA+R + ++ Sbjct: 105 FGKIPPTFTRREGAPKDREVLAMRVVDRAIRPLFPKSFSRDTSVQAIVLATDQSQDPAVL 164 Query: 129 SITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNG--EAVCDLEYVEDSAAETD 186 ++ GA AL + + P G V AV V ++ E + + + A++ Sbjct: 165 AVNGASAAL-----------SVSSIPWNGPVGAVRVSVLGDGNEIILNPSDKDVEASKLT 213 Query: 187 MNVVMTEDGRI-IEVQ-GTAEGEPFTHEELLILLALARGESNPL 228 + E+ + IE Q GTA+ + L A + L Sbjct: 214 LFYAGNENRTLMIEAQAGTADEGGVPESVVASALRAAHEAAKVL 257 >UniRef50_A4RT74 Predicted protein n=2 Tax=Ostreococcus RepID=A4RT74_OSTLU Length = 679 Score = 158 bits (400), Expect = 1e-37, Method: Composition-based stats. Identities = 45/243 (18%), Positives = 87/243 (35%), Gaps = 32/243 (13%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQ 56 +R GR ++R + GS L E G+T+ L T ++ + L G Sbjct: 266 VRVDGRGVYELRNLDGVTGTMPIVHGSALFERGNTQALATVTLGSLEDSQRLDNLTGPTS 325 Query: 57 GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 + Y S + AR R + L ++L + F + ++ Sbjct: 326 KRLMLHYSFPSFSVNETGARGL-----SRREVGHGALAEKSLLGVFPDEDAFPFAVRVNT 380 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV--------- 167 + L+++G + A++ +AL+DA P+ V A+S+G+V Sbjct: 381 ETLESNGSSSMAAVCSGSMALMDA-----------GVPLTEHVGAISIGLVMDEDEETGE 429 Query: 168 --NGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 + D+ +ED + D + T G + +Q + + L+ L A Sbjct: 430 VKRYALMDDIMGLEDVLGDMDFKIAGTRSG-VTGIQLDCKPAGIPLDILIEALDRASAAR 488 Query: 226 NPL 228 + Sbjct: 489 QKV 491 Score = 58.5 bits (140), Expect = 2e-07, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 54/172 (31%), Gaps = 16/172 (9%) Query: 60 TAEYGMLPRSTHTR-NAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDV 118 +Y + + +G R + R+I RA R + + L C V Sbjct: 1 MVDYRERSYAKGKIPSTFTRREGAPKEREILAMRVIDRATRPL--FEKNFAKEVMLQCVV 58 Query: 119 LQADGGTRTA--SITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLE 176 + +DG A ++ GA AL + P G + AV V +VN + Sbjct: 59 MASDGVEDPAVLAVNGASAAL-----------TASSIPWNGPIGAVRVAVVNKAIIVSPS 107 Query: 177 YVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 +++ + E ++ + + + L A L Sbjct: 108 DEVVESSDFTLFYAGNEARALMIEAQSNKSGGLEETLVADALRKAHEAVREL 159 >UniRef50_UPI0001926EAD PREDICTED: similar to 3 exoribonuclease n=2 Tax=Hydra magnipapillata RepID=UPI0001926EAD Length = 437 Score = 158 bits (399), Expect = 2e-37, Method: Composition-based stats. Identities = 46/250 (18%), Positives = 93/250 (37%), Gaps = 32/250 (12%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +R GR R +++ G V+ G+T+VL S E P +G + Sbjct: 24 IRLDGRQAFDYRNISIQFGID---YGCCEVQLGETRVLAQTSCELVKPIG-TRPTEGQLH 79 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRA--AVDLKALG------EFTI 112 + P ++ + G+ + +EI RLI R ++ +D+++L ++I Sbjct: 80 LNVDLSPMASPSFE-----TGRMTSQGLEINRLIERCIKESRCIDVESLCLIAGEKVWSI 134 Query: 113 TLDCDVLQADGGTRTASITGACVALVDALQKLV----------ENGKLKTNPM--KGMVA 160 +D VL G S +L V + P+ M Sbjct: 135 RVDIVVLNDCGNILDCSCIAGIASLAHFKHHDVTVTGTEVIIHNFKEKDPIPLNVHHMPI 194 Query: 161 AVSVGIVNG--EAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILL 218 + + G ++ + + D E E+S + + G + Q + G F +E++L Sbjct: 195 STTFGFIDDGEQMIIDPEEKEESILSGKLIMAFNIYGEVCCAQMSG-GVSFDYEQILQCA 253 Query: 219 ALARGESNPL 228 ++ +S+ + Sbjct: 254 KISSVKSSEI 263 >UniRef50_A6DU91 Polynucleotide phosphorylase/polyadenylase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DU91_9BACT Length = 696 Score = 157 bits (396), Expect = 3e-37, Method: Composition-based stats. Identities = 54/235 (22%), Positives = 88/235 (37%), Gaps = 26/235 (11%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGW--- 58 R GR +RP++ + GS L G+T+ L T ++ + +G Sbjct: 315 RADGRGAEDLRPLSAENSLMPRTHGSALFARGETQALVTVTLGDAKAAQSAETIRGRYDK 374 Query: 59 -ITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCD 117 Y S A G R + L RAL A + A +T+ + + Sbjct: 375 TFYLHYNFPNFSVGECGRIMGA----GNREIGHGNLAERAL--AKMMPADYPYTVRVISE 428 Query: 118 VLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV----NGEAVC 173 V+ ++G T ASI G +AL+DA P+K VA +SVG+V + Sbjct: 429 VMGSNGSTSMASICGGSLALMDA-----------GVPLKKAVAGISVGLVQEADKYVMIT 477 Query: 174 DLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 D+ ED + D V T DG I Q + + + + + + + Sbjct: 478 DILGSEDHYGDMDFKVAGTRDG-ITAFQLDLKIAGVSLDMMYEAMLRDKTARMDI 531 >UniRef50_C3Z2F7 Putative uncharacterized protein (Fragment) n=4 Tax=Coelomata RepID=C3Z2F7_BRAFL Length = 723 Score = 157 bits (396), Expect = 4e-37, Method: Composition-based stats. Identities = 51/247 (20%), Positives = 92/247 (37%), Gaps = 38/247 (15%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIE--------EGVPRFLKG 53 R GR +R ++ + K GS L + G T+VL T + + + + L G Sbjct: 316 RCDGRDMTSLRDISCDVDLYKPLHGSALFQRGQTQVLSTVTFDSKQASLKMDPIAEILGG 375 Query: 54 QGQGWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTIT 113 Q Y P +T+ R + L AL+ V FTI Sbjct: 376 VKQKDFMLHYVFPPYATNE----TGRVSSNSRRELGHGALAENALKPVVPSD--FPFTIR 429 Query: 114 LDCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV------ 167 L +VL+++G + AS +AL+DA P+ VA V++G+V Sbjct: 430 LTAEVLESNGSSSMASACSGSLALMDA-----------GVPISSPVAGVAIGLVTRTDPN 478 Query: 168 ------NGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALA 221 + + + D+ +ED + D + T+ G + +Q + + ++ A Sbjct: 479 NPTEIQDYKLLTDILGIEDYMGDMDFKMAGTKKG-VTALQADIKLPGLPLKIIMEATQQA 537 Query: 222 RGESNPL 228 + + Sbjct: 538 TMAKSDI 544 Score = 78.5 bits (192), Expect = 2e-13, Method: Composition-based stats. Identities = 49/222 (22%), Positives = 85/222 (38%), Gaps = 23/222 (10%) Query: 11 VRPVTLTRNYTKH-AEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRS 69 R + ++ A+G +VE GDT + TA + P +T +Y + Sbjct: 11 CRVMRISTGKFARFADGCAVVEIGDTSAMVTA-VSRTRPSSAGFLP---LTVDYRQKAAA 66 Query: 70 THTR-NAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADG-GTRT 127 + Q R + + RLI R++R + E + ++L DG Sbjct: 67 AGRIPTTHLRRELAQTDREILVSRLIDRSIRPLFPAGYMYETQ--VISNLLAVDGVNDPD 124 Query: 128 -ASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETD 186 ASI GA AL L P G + AV VGIV+ E V + + S ++ + Sbjct: 125 IASINGASTALA-----------LSDCPWNGPIGAVRVGIVDDEYVINPTRRQLSRSKLN 173 Query: 187 MNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 + V E ++ ++G+AE + + E+ + Sbjct: 174 LVVTGAERNLVVMLEGSAENVLLP--DFQRAIKTGIKETQKI 213 >UniRef50_Q6P0I8 Exosome complex exonuclease MTR3 n=5 Tax=Euteleostomi RepID=EXOS6_DANRE Length = 271 Score = 157 bits (396), Expect = 4e-37, Method: Composition-based stats. Identities = 45/233 (19%), Positives = 83/233 (35%), Gaps = 29/233 (12%) Query: 6 RSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQ-GWITAEYG 64 R N VRPV A+GS +E G+TK++C+ + R + + G + ++ Sbjct: 37 RGNGDVRPVFARCGLVSQAKGSAYIEAGNTKIICSVYGPKETERRDETDMKTGRLVCDFR 96 Query: 65 MLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGG 124 + P S R A QG ++ + +LR V L I ++ VL+ DG Sbjct: 97 LAPFSCVKRGA-----WIQGSEERDLSATLMESLRPGVCLHRYPRSQIDVNVMVLENDGS 151 Query: 125 TRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDS--- 181 ++T A +AL DA M +V ++ + D Y E+ Sbjct: 152 VLAHAVTCASMALADA-----------GIEMYDIVLGCTLRQSGNACLVDPSYAEECGSW 200 Query: 182 -----AAETDMNVV-MTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 + + + + ++ + E + L + + L Sbjct: 201 QEGYGDNQGCVTLALLPNLNQVSGLNADGE---MREDTLTEAMRTCMDGCHKL 250 >UniRef50_UPI000180B7A0 PREDICTED: similar to Exosome component 9 n=1 Tax=Ciona intestinalis RepID=UPI000180B7A0 Length = 385 Score = 156 bits (394), Expect = 6e-37, Method: Composition-based stats. Identities = 45/249 (18%), Positives = 89/249 (35%), Gaps = 32/249 (12%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +R GR + R +T+ + G +V G TKV+ + E P Q +G + Sbjct: 24 IRIDGRGMLEYRGITIHFSLD---HGCCVVNMGGTKVMAQVAAELCRP-RESRQSEGSLG 79 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARAL--RAAVDLKALGE------FTI 112 + M + + K G E+Q+++ R++ AVDL+ L + I Sbjct: 80 VQVEMSMMAAPHLDP-----AKPGDSGAELQQMLERSIVMSQAVDLEELCVRVGEKSWNI 134 Query: 113 TLDCDVLQADGGTRTASITGACVALVDALQKLV------------ENGKLKTNPMKGMVA 160 + VL DG + + +L + V E+ + + Sbjct: 135 QIFVHVLSHDGNLLDCATIASMTSLKHFKRPDVSVVGQEVTIHKFEDKHPIPLTLHHVPF 194 Query: 161 AVSVGIV--NGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILL 218 VS G V D E+ + + V + + + +Q + + + E++L Sbjct: 195 CVSFAFFQGGGLMVVDPTLNEEKVMDGKLMVAVNKHKEVCCLQMNGQLQ-LSKEQILNCT 253 Query: 219 ALARGESNP 227 +A ++ Sbjct: 254 NIASTKAQT 262 >UniRef50_Q8T4A9 Rrp45 n=2 Tax=melanogaster group RepID=Q8T4A9_DROME Length = 412 Score = 155 bits (393), Expect = 9e-37, Method: Composition-based stats. Identities = 50/249 (20%), Positives = 92/249 (36%), Gaps = 32/249 (12%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR +N+ R V LT GSV V GDTKVL + E G P L +G I Sbjct: 29 RLDGRRSNESRDVELTFG---KDWGSVAVSMGDTKVLAQVTCEMG-PPALSRPNEGKIHL 84 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAA--VDLKALGE------FTIT 113 + + R++++ L+ R R++ +DL++L + I Sbjct: 85 NVYLGGVAFLDEAHTTH-----DQRSLKLNSLLERTFRSSRSIDLESLCVAVEKHVWCIR 139 Query: 114 LDCDVLQADGGTRTASITGACVALVDALQKLV----------ENGKLKTNPM--KGMVAA 161 ++ +VL DG AS AL+ + V + + + P+ + Sbjct: 140 VNVNVLNHDGNLYDASTIATLAALMHFRRPDVWYKDGELRIFKKKEREFIPLLFHHYPVS 199 Query: 162 VSVGIVNG--EAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLA 219 V+ + + + D +E++AA++ + + + + P ++ Sbjct: 200 VTYCVYKSSVQPILDPTLLEENAADSVIVLSFNSFQELCSLTAGGT-APTNARIIMQCAR 258 Query: 220 LARGESNPL 228 A L Sbjct: 259 NAAVRCKSL 267 >UniRef50_Q55BJ2 Putative uncharacterized protein n=1 Tax=Dictyostelium discoideum RepID=Q55BJ2_DICDI Length = 526 Score = 155 bits (392), Expect = 1e-36, Method: Composition-based stats. Identities = 42/248 (16%), Positives = 90/248 (36%), Gaps = 31/248 (12%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR N +R + + + G V V+ G T+V + + P+ + +G+ Sbjct: 22 RIDGRGVNDMRAIKIEFG---KSYGVVEVQLGKTRVFTAITCDIVEPK-PERPNEGFYIF 77 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALR--AAVDLKALG------EFTIT 113 + P S+ + N + E+ R+I + L+ A+D +AL ++I Sbjct: 78 NTDISPMSSVSVN-----VNQPNPMESELGRIIEKGLKDSRAIDTEALCIISGSKVWSIK 132 Query: 114 LDCDVLQADGGTRTASITGACVALVDALQKLV------------ENGKLKTNPMKGMVAA 161 + VL G + AL+ + V + + + + Sbjct: 133 IAIHVLDDCGNLLDCASISVMTALIHFRKPDVTVIGNDATIHSLDEREPVPLSIHHTPIS 192 Query: 162 VSVGIV-NGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLAL 220 ++ G N + D + E+S + ++ + I V G T +++L + Sbjct: 193 ITFGFFPNEIMIVDPDTKEESVMDGKLSFFVNIHKEICGVSKGG-GTSTTIDQVLKCSKI 251 Query: 221 ARGESNPL 228 A ++ + Sbjct: 252 AVIKAAEI 259 >UniRef50_A7RP27 Predicted protein (Fragment) n=1 Tax=Nematostella vectensis RepID=A7RP27_NEMVE Length = 710 Score = 155 bits (392), Expect = 1e-36, Method: Composition-based stats. Identities = 53/250 (21%), Positives = 91/250 (36%), Gaps = 40/250 (16%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIE--------EGVPRFLKG 53 R GR +++R + N K GS L + G+T+V TA+ + + + G Sbjct: 305 RCDGRQFDELRSIDCDINLYKTLHGSSLFKRGETQVFSTATFGSVGSAAKVDTISEAVGG 364 Query: 54 QGQGWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTIT 113 + Y P ST+ R G R + L RAL + + FT+ Sbjct: 365 SKEKQFMLHYEFPPFSTNEVKQRR---GSFDRREIGHGALAERALVPVLPDEL--PFTLR 419 Query: 114 LDCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV------ 167 L +VL ++G + AS +A++DA P+K VA + G+V Sbjct: 420 LTAEVLGSNGSSSLASACAGSLAMMDA-----------GVPIKSHVAGSACGLVTSSDAE 468 Query: 168 --------NGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLA 219 N + + D+ +ED + D + T G I +Q + + + Sbjct: 469 DASKRDIDNYQLLTDILGIEDYLGDMDFKIAGTRQG-ITALQADFKVPGLPVAIVEEAIR 527 Query: 220 LAR-GESNPL 228 + L Sbjct: 528 RCSVDRAKVL 537 Score = 61.2 bits (147), Expect = 2e-08, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 84/221 (38%), Gaps = 24/221 (10%) Query: 12 RPVTLTRNYTKH-AEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEY-GMLPRS 69 R + + A+GS + ++ DT VL TA + + +Y + Sbjct: 2 RQLKFSTGKLALLADGSTVTQYEDTSVLVTAISSKKPSENSFLP----LVVDYKEKASAA 57 Query: 70 THTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQAD--GGTRT 127 R + + R I R++R+ + I +L AD Sbjct: 58 CLIPTTFLRRDLLANEREILVCRRIDRSVRSLFMKGYTYDTQI--ISHLLAADRFNNPDV 115 Query: 128 ASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDM 187 ++ GA +L L + P +G V AV +G V+G+ V + + ++ D+ Sbjct: 116 VAVNGASASLA-----------LSSIPWRGPVGAVRIGDVDGQLVVNPLRQQLEHSQLDL 164 Query: 188 NVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 V + + +I+ V+G A+ E L + LA E+ P+ Sbjct: 165 VVT-SSESKIVMVEGFAKE--VPDERLCEAIKLAFSEAQPI 202 >UniRef50_B4Q1V5 GE15642 n=8 Tax=Drosophila RepID=B4Q1V5_DROYA Length = 415 Score = 154 bits (389), Expect = 2e-36, Method: Composition-based stats. Identities = 50/249 (20%), Positives = 90/249 (36%), Gaps = 32/249 (12%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR +N+ R V LT G+V V GDTKVL + + G P +G + Sbjct: 29 RFDGRRSNECRDVELTFGAD---WGTVAVSMGDTKVLTHVTCDMGAP-ATSRPNEGKLQL 84 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAA--VDLKALGE------FTIT 113 + + R++ + L+ R R++ VDL++L + I Sbjct: 85 NVNLGGVAFLDEVQTTH-----DQRSLTLNSLLERTFRSSRSVDLESLCVAAEQHVWCIR 139 Query: 114 LDCDVLQADGGTRTASITGACVALVDALQKLV----------ENGKLKTNPM--KGMVAA 161 +D +VL DG AS AL+ + V + + P+ + Sbjct: 140 VDVNVLNHDGNLYDASTIATLAALMHFRRPDVTFTDDELRIYTEKEREFIPLLFLHYPVS 199 Query: 162 VSVGIVN--GEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLA 219 V+ I G+ + D +E++AA++ + + + + P ++ Sbjct: 200 VTYCIYKSSGQPIVDPTLLEENAADSVIVLSFNSYQELCSLNAGGT-APTNVRTIMQCAR 258 Query: 220 LARGESNPL 228 A L Sbjct: 259 NAATRCKSL 267 >UniRef50_Q17NN4 Exosome complex exonuclease rrp43 (Ribosomal RNA processing protein 43) n=5 Tax=Nematocera RepID=Q17NN4_AEDAE Length = 274 Score = 154 bits (389), Expect = 2e-36, Method: Composition-based stats. Identities = 44/239 (18%), Positives = 86/239 (35%), Gaps = 18/239 (7%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +RP GR +RP+ + + K A+GS +V+ G+T V+C E P+ ++ G++ Sbjct: 23 IRPDGREIGDLRPLAINFDSIKTADGSAIVKIGNTTVVCGIKAELAPPKPVE-PDTGYLV 81 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIAR---ALRAAVDLKALGEFTITLDCD 117 + P S+ ++ Q ++ L+ K + + D Sbjct: 82 PNIEISPLSSPKYRPGPPSEEAQVYSCSLADAILNSGCVNLKDLCITKEQLVWALYCDLV 141 Query: 118 VLQADGGTRTASITGACVALVDALQKLV------------ENGKLKTNPMKGMVAAVSVG 165 L DG AS+ AL V E+ + + + S Sbjct: 142 CLDHDGCIFDASVIALVAALHTLRLPPVKHNPDTDEREVDEDAERIPLKLNSIPVTTSFA 201 Query: 166 IVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGE 224 + G + D E++ A + + + + D + + + G+P E L + A Sbjct: 202 VFGGRIIADPTAEEEALATSTITITI-CDSTLSYINKSG-GDPLEQELLDKCIENAMKR 258 >UniRef50_Q9YC05 Probable exosome complex exonuclease 2 n=4 Tax=Desulfurococcales RepID=ECX2_AERPE Length = 276 Score = 154 bits (389), Expect = 2e-36, Method: Composition-based stats. Identities = 48/244 (19%), Positives = 89/244 (36%), Gaps = 26/244 (10%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 RP R R V + + AEGS LV+ G T+V+ G P F QG +T Sbjct: 28 RPGDRDLKTPRNVKIETGIIEKAEGSALVKLGKTQVIAGVKAGVGAP-FKDTPNQGVLTV 86 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARAL--------RAAVDLKALGEFTIT 113 +P ++ G +E+ R++ R+L + V + + Sbjct: 87 HAEFVPLASPVFEP-----GPPDENAIELARVVDRSLREVGAVDLESLVIRPGEKVWVLW 141 Query: 114 LDCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKG-----------MVAAV 162 +D ++ DG AS+ L+ A E + + V V Sbjct: 142 VDLYIIDHDGNLFDASMLATMAVLLTARLPRYEESETGEIIISKEGEGEELKVKTRVVTV 201 Query: 163 SVGIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALAR 222 + ++ V D E++ ++ + + E+GRI+ +Q T T ++ ++ + Sbjct: 202 TTAKIDRYIVVDPNIEEEAVSDVRLVTAVDENGRIVGLQKTGM-GSLTEADIETMIGYSL 260 Query: 223 GESN 226 S Sbjct: 261 EASK 264 >UniRef50_A8MA85 3' exoribonuclease n=1 Tax=Caldivirga maquilingensis IC-167 RepID=A8MA85_CALMQ Length = 279 Score = 154 bits (388), Expect = 3e-36, Method: Composition-based stats. Identities = 55/237 (23%), Positives = 90/237 (37%), Gaps = 28/237 (11%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 RP R +R +T+ K A+GS LV G+TKV+ E G P F +G + Sbjct: 26 RPDDRQLISMRDLTIRVGVIKTADGSALVNLGNTKVIAGIKFELGKP-FEDTPNEGNLIV 84 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRA--------AVDLKALGEFTIT 113 P + T G +EI R+I RALR V + +++ Sbjct: 85 NLETPPLAAPTFEP-----GPPDENAIEIARIIDRALRHSNYIPLRDLVIIPGKSVYSMW 139 Query: 114 LDCDVLQADGGTRTASITGACVALVDALQK-------LVENGKLKTNPMK----GMVAAV 162 +D VL DG +S+ A A+ +A V+ K P+ M V Sbjct: 140 VDIYVLNHDGNLIDSSMLAAVSAIANAQVPRAIIDGENVKLDKSTKIPLNINPQNMPLTV 199 Query: 163 SVGIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLA 219 + ++ + D E+ ++ V + I+ +Q FT EE+ ++ Sbjct: 200 TYYKIDKYLIVDPTLEEEVMSDGRFTVASDGEN-IVALQKG--EGYFTPEEVDSMMN 253 >UniRef50_D2VE23 3' exoribonuclease domain-containing protein n=1 Tax=Naegleria gruberi RepID=D2VE23_NAEGR Length = 367 Score = 153 bits (387), Expect = 4e-36, Method: Composition-based stats. Identities = 47/256 (18%), Positives = 90/256 (35%), Gaps = 32/256 (12%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHA----EGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQ 56 +R GR R + + + G V V G+T L S P ++ + Sbjct: 58 LRIDGRDLYDYRSIEFSLPTSSQELAVPSGQVQVTLGNTIALGIVSCSIMEP-YMDRPNE 116 Query: 57 GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALR--AAVDLKALG------ 108 G++T + +R +Q +EI R+I R+LR ++D +AL Sbjct: 117 GFLTFQIDFST--VGSRPIGTKQTSQQRELCIEIGRVIDRSLRGSRSIDTEALCIIAGRK 174 Query: 109 EFTITLDCDVLQADGGTRTASITGACVALVDALQKLVE------------NGKLKTNPMK 156 +++ +D +LQ DG A AL+ + V + + + Sbjct: 175 VWSLRVDVHILQDDGNVFDCCHLAAVAALLHFKRPEVTIEGDRVVVHTVQDRQPVPLSVH 234 Query: 157 GMVAAVSVGIVNGE----AVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHE 212 + S + + V D E+ AE M + + + +Q G T + Sbjct: 235 HIPICTSFSFFDHDSATLFVVDPCKKEEMIAEGFMTIALNAHKELCAIQKGG-GLALTKD 293 Query: 213 ELLILLALARGESNPL 228 ++L + +S + Sbjct: 294 QILECAQIGSVKSKEI 309 >UniRef50_C7DI02 3' exoribonuclease n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DI02_9EURY Length = 258 Score = 153 bits (386), Expect = 5e-36, Method: Composition-based stats. Identities = 51/240 (21%), Positives = 96/240 (40%), Gaps = 21/240 (8%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R R + R + ++R HAEGS + G TKVL + + QG + Sbjct: 21 REDSRGSMDFRDLKISRGVIDHAEGSAQADLGATKVLAGVKL-VQEDVYEDTPDQGNLVV 79 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRA-------AVDLKALGEFTITL 114 +LP + G +E+ R++ RA+RA ++ L+ +T+ + Sbjct: 80 SAELLPLAAAEYE-----TGPPSPEAIELGRVVDRAIRAGNCIDLKSLLLEEGKAWTVYV 134 Query: 115 DCDVLQADGGTRTASITGACVALVDALQKLVENGKLK------TNPMKGMVAAVSVGIVN 168 D VL DG AS+ A A++DA +GK + +V++ + + Sbjct: 135 DVYVLNFDGNLFDASVIAAMSAILDARVPEYADGKADYTKREKKLKVDNVVSSTTFAKIG 194 Query: 169 GEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 + D E+ + + + + DG++I F+ EE+ L+A + + + Sbjct: 195 KAILLDPTGNEELGMDARLTI--STDGKMIRAMQKGLAGSFSVEEIESLIAESLKKHAHM 252 >UniRef50_Q5TMQ4 AGAP011906-PA n=4 Tax=Culicidae RepID=Q5TMQ4_ANOGA Length = 308 Score = 153 bits (386), Expect = 6e-36, Method: Composition-based stats. Identities = 42/187 (22%), Positives = 67/187 (35%), Gaps = 16/187 (8%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR + R A+GS VE G+TKV+ + +P+ K G + Sbjct: 43 RKDGRRLQESRKYYAKIGVVSTAKGSAYVELGNTKVIVSVFDPREIPKQNKFCELGELFC 102 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQA 121 + P + R + R + + AL +V I + +VL+ Sbjct: 103 DLKFSPFAPAVRK-----THQTDARERSMTAALTSALNPSVCRHLFPNLQIDVFANVLED 157 Query: 122 DGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDS 181 DG +IT A +AL DA PM +V A + G++ V D E++ Sbjct: 158 DGSALAVAITAAGLALGDAC-----------VPMFDIVTAATAGVLGDRVVMDPTAEEEA 206 Query: 182 AAETDMN 188 Sbjct: 207 LCLAGHT 213 >UniRef50_D2A0W4 Putative uncharacterized protein GLEAN_08282 n=3 Tax=Endopterygota RepID=D2A0W4_TRICA Length = 271 Score = 152 bits (384), Expect = 8e-36, Method: Composition-based stats. Identities = 45/247 (18%), Positives = 89/247 (36%), Gaps = 27/247 (10%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +RP GR + RP+ + A+GS + + G T V+C E P+ + +G++ Sbjct: 22 IRPDGREFGEYRPIVVNLGSISTADGSAIAKVGRTTVVCGIKAELCQPKA-EAANEGFLI 80 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRA--AVDLKALG------EFTI 112 + P + G + +L+A L+ +DLK L + + Sbjct: 81 PNVELPPLCSSKFRP-----GPPTEQAQVATQLVADILKNSDCLDLKTLCIFPDKLAWCL 135 Query: 113 TLDCDVLQADGGTRTASITGACVALVDALQKL-----------VENGKLKTNPMKGMVAA 161 D L DG A + AL V + K + A Sbjct: 136 YADLICLDLDGALIDACVVALMAALKSVTLPAVQYDPALDNKQVNVQERKALSVTNTPIA 195 Query: 162 VSVGIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALA 221 + + + + + D E+ + + + +V+ ++ + V G FT E+LL + + Sbjct: 196 TTFAMFDDKILIDPTVDEEDLSTSLVTIVV-KEEELCFVHKPG-GCVFTEEQLLKCVEES 253 Query: 222 RGESNPL 228 + + Sbjct: 254 TKRATVI 260 >UniRef50_B0ERA1 Exosome complex exonuclease RRP41, putative n=2 Tax=Entamoeba RepID=B0ERA1_ENTDI Length = 238 Score = 151 bits (382), Expect = 1e-35, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 83/229 (36%), Gaps = 23/229 (10%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR ++R + N+ ++GS V G+T V + + + Sbjct: 10 RLDGRRTTEMRKCEMEINFLNTSDGSARVRMGNTIVEAVVFGPLE--GRRRNREGAELMV 67 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQA 121 Y +T R + +E L+ + + K L E I L ++Q Sbjct: 68 SYSQATFATRKRREQMH-----DRTMIETAELLKQMYEQVIITKLLPETMIDLRVQIMQD 122 Query: 122 DGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDS 181 DG A I +AL+DA PM +V+A G ++G+ V D+ E++ Sbjct: 123 DGSVTAAVINACTLALIDA-----------GIPMIDIVSAAEGGYIDGKMVVDMNKDEEN 171 Query: 182 AAET--DMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 +M + G + +Q + + L LL++ + + Sbjct: 172 VGTVFNVHTAIMQKSGAVALLQTEGK---MPLQRLGDLLSIVEEGAKTI 217 >UniRef50_UPI000186F240 conserved hypothetical protein n=1 Tax=Pediculus humanus corporis RepID=UPI000186F240 Length = 278 Score = 151 bits (381), Expect = 2e-35, Method: Composition-based stats. Identities = 41/236 (17%), Positives = 82/236 (34%), Gaps = 24/236 (10%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +R GR+ R + + A+GS +E +TKVL + +PR + G I Sbjct: 41 IRKDGRTFEDQRKIYMKTGVVTQAKGSAYLELNNTKVLVSVFEPREIPRLSEFTPNGEIY 100 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 E+ P R ++ ++ R+L AV F + + +L Sbjct: 101 CEFKFAPFYGLERKG-----HIMDLEEKDLSIILKRSLEPAVCRHEFPNFQVDVYALLLD 155 Query: 121 ADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVED 180 DG +A+IT PM ++ +V++GI N D + E+ Sbjct: 156 NDGSCLSAAIT-----------AAGLALADAGIPMYDILTSVTLGIHNDMIFIDPNFEEE 204 Query: 181 SAAETDMN--------VVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 ++ + ++ + +V + + +L + L + + Sbjct: 205 KFCKSFFKNKTSEIGIISLSYMPEMAQVTEITQSGTVSINTILKSMDLLISKCKTI 260 >UniRef50_Q74NF6 NEQ248 n=1 Tax=Nanoarchaeum equitans RepID=Q74NF6_NANEQ Length = 233 Score = 151 bits (381), Expect = 2e-35, Method: Composition-based stats. Identities = 56/247 (22%), Positives = 94/247 (38%), Gaps = 46/247 (18%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 MR GR N++R + A+GS G+T + ++ G+ Q + Sbjct: 1 MRFDGRDYNEIRDTEMKIGVISKADGSAYCRTGNTIAIAAVYLK-------PGREQSNLK 53 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 Y MLP + R R +E+ +IA+AL A+ + + TI ++++ Sbjct: 54 VSYRMLPFAGEERKGLGL-----TRREIELSYIIAKALEPAIIFEEIPYLTIEASVEIIK 108 Query: 121 ADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVED 180 AD GTR A+I +AL A PMK +V A++VG V + V DL E+ Sbjct: 109 ADAGTRVAAINALSLALAHA-----------GIPMKALVGAIAVGKVGEKIVLDLNKQEE 157 Query: 181 SAAE-------------------TDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALA 221 D+ + M + +I +Q + LL + L Sbjct: 158 DYDSEIIKKELPQYYEYYGEGKAVDIPMAMYK-NKITLLQLDG---SIDRKSLLEAIKLG 213 Query: 222 RGESNPL 228 + + Sbjct: 214 KDGIKRM 220 >UniRef50_B5S2C1 Polyribonucleotide nucleotidyltransferase protein n=5 Tax=Proteobacteria RepID=B5S2C1_RALSO Length = 752 Score = 150 bits (379), Expect = 3e-35, Method: Composition-based stats. Identities = 46/170 (27%), Positives = 76/170 (44%), Gaps = 19/170 (11%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQG 57 R GR VRP+ + + A GS L G+T+ L A++ +E + L+G+ + Sbjct: 315 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALQGEYRD 374 Query: 58 WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCD 117 Y M P +T G R + RL RAL + +TI L + Sbjct: 375 RFMLHYNMPPFATGE----TGRVGSPKRREIGHGRLAKRALIPVLPKDDEFAYTIRLVSE 430 Query: 118 VLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV 167 + +++G + AS+ G C+AL+DA P+K VA V++G++ Sbjct: 431 ITESNGSSSMASVCGGCLALMDA-----------GVPVKAHVAGVAMGLI 469 Score = 64.3 bits (155), Expect = 3e-09, Method: Composition-based stats. Identities = 44/226 (19%), Positives = 76/226 (33%), Gaps = 28/226 (12%) Query: 13 PVTLTRNYT-KHAEGSVLVEFGDTKVLCTASI-EEGVPRFLKGQGQGWITAEYGMLPRST 70 V + + A G+VL++ DT VL T + P +T +Y + Sbjct: 15 KVRMETGEIARQASGAVLLDMDDTVVLATVVGAKNPKPGQDFFP----LTVDYIEKTYAA 70 Query: 71 HTRNARE-AAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTAS 129 +G+ RLI R LR E + + VL S Sbjct: 71 GKIPGGFFKREGRPSENETLTSRLIDRPLRPLFPEGFYNE--VQVVVHVL---------S 119 Query: 130 ITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNV 189 I A + AL + P G V A VG +G+ + + + + ++ D+ V Sbjct: 120 INPEVPADIPALVAASAALAVSGLPFNGPVGAARVGYKDGQYLLNPNRAQLAHSDLDLVV 179 Query: 190 VMTEDGRIIEVQGTAEGEPFTHEELLIL-------LALARGESNPL 228 TE + +E + + E +L + +A + L Sbjct: 180 AGTER---AVLMVESEAQQLSEEVMLGAVVYGHEQMQIAINAIHDL 222 >UniRef50_Q0IT44 Os11g0311300 protein (Fragment) n=11 Tax=Magnoliophyta RepID=Q0IT44_ORYSJ Length = 300 Score = 150 bits (379), Expect = 3e-35, Method: Composition-based stats. Identities = 48/254 (18%), Positives = 89/254 (35%), Gaps = 29/254 (11%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +RP R + RP T+ A GS LV GDT +L + +E P + +G I Sbjct: 33 VRPDARRPAEARPTTVALAAVSSAHGSALVRLGDTAMLASIKLEVMSPSG-EAPDEGSIA 91 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARA----LRAAVDLKALGEFTITLDC 116 E+ M P + A+ + ++ ++ + L+ + + LD Sbjct: 92 VEFHMPPICSPLVRPGRPAEVAPVI-SKNLEDILMSSGMLNLKELCLISGKASWLAYLDV 150 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTN----------------------P 154 L ADG A++ A A LV G Sbjct: 151 YCLNADGSLFDAALISAVAAFTHLEIPLVSVGDDGRVFTVGGNEGKAKYELVNREKRKLT 210 Query: 155 MKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEEL 214 + + +++ + + D E+S ET + +V+ +I+ +Q G + + Sbjct: 211 ITNVPFSLTCALHKDNVLADPTAEEESIIETSVTIVLDSSDQIVSIQKPG-GAVTSMTTI 269 Query: 215 LILLALARGESNPL 228 ++LA+ L Sbjct: 270 KECISLAKDRRRKL 283 >UniRef50_Q9LX74 AT3G46210 protein n=8 Tax=Embryophyta RepID=Q9LX74_ARATH Length = 239 Score = 149 bits (377), Expect = 6e-35, Method: Composition-based stats. Identities = 48/243 (19%), Positives = 84/243 (34%), Gaps = 40/243 (16%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR+ NQ+RP+ +RN GS GDTKVL + + + + Sbjct: 5 REDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNENAEKACFEV 64 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQA 121 + G+ G E + ++ R +++ L T ++ V+ Sbjct: 65 IWK-------------PKSGQIGKVEKEYEMILKRTIQSICVLTVNPNTTTSVIIQVVHD 111 Query: 122 DGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGI-VNGEAVCDLEYVED 180 DG +I AC ALVDA PMK + A+ + NG V D +E+ Sbjct: 112 DGSLLPCAINAACAALVDA-----------GIPMKHLAVAICCCLAENGYLVLDPNKLEE 160 Query: 181 SAAETDMNVVMTEDGRIIEVQGTAEGEP---------------FTHEELLILLALARGES 225 +V + +G++ E + ++ + + R + Sbjct: 161 KKMTAFAYLVFPNTTLSVLPEGSSVAEGEPVEHGIITSITHGVMSVDDYFLCVENGRAAT 220 Query: 226 NPL 228 L Sbjct: 221 ASL 223 >UniRef50_Q10205 Exosome complex component rrp43 n=1 Tax=Schizosaccharomyces pombe RepID=RRP43_SCHPO Length = 270 Score = 149 bits (376), Expect = 7e-35, Method: Composition-based stats. Identities = 36/239 (15%), Positives = 81/239 (33%), Gaps = 18/239 (7%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +R GRS ++ R + + N A GS ++ G+ +C E P F +GWI Sbjct: 34 VRSDGRSVSEFREIVINDNCISTANGSAIIRAGENVFVCGIKAEIAEP-FENSPNEGWIV 92 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARA----LRAAVDLKALGEFTITLDC 116 + P + + Q + E+ + + ++ L++ + + + D Sbjct: 93 PNLELSPLCSSKFKPGPPSDLAQVV-SQELHQTLQQSNLINLQSLCIFEKKAAWVLYADI 151 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKL-----------KTNPMKGMVAAVSVG 165 L DG + AL + + + V + S Sbjct: 152 ICLNYDGSAFDYAWAALFAALKTVKLPTAVWDEDLERVICASTLTRPVQLSTEVRSFSWS 211 Query: 166 IVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGE 224 + + + + D E+ + + +++ I+++ G L + +AR + Sbjct: 212 VFDDKLLADPTDEEEDLSTEFLTIMLNSSKNIVKIIKLG-GTHIQPLLLKKCIEVARSK 269 >UniRef50_B7GAV6 Predicted protein n=2 Tax=Bacillariophyta RepID=B7GAV6_PHATR Length = 274 Score = 149 bits (375), Expect = 9e-35, Method: Composition-based stats. Identities = 59/244 (24%), Positives = 91/244 (37%), Gaps = 31/244 (12%) Query: 1 MRPAGRSNNQVRPVTLTRNYTK--HAEGSVLVEFGDTKVLCTASIEEG-VPRFLKGQGQG 57 +R GR +++R + + + GS LVE G T VL T + R + Q Sbjct: 16 LRNDGRKPHEIRRMRVQMSPLSVSTISGSALVEMGLTVVLATVRGPVDCLRRADENPDQA 75 Query: 58 WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCD 117 + P S+ R A K R +E ++ RA+ AA+ L + I L Sbjct: 76 VLDVTVQSAPFSSSA--DRRVANPKTDRRLIEASHMLKRAMEAAILLHLYPKSRIELVVS 133 Query: 118 VLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEA------ 171 VL DGG A+I A +AL+DA PMK V A S G+ A Sbjct: 134 VLADDGGRLCAAINAATLALMDA-----------GIPMKDFVCACSAGLPGTSATPDSHA 182 Query: 172 --VCDLEYVEDSAAETDM-----NVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGE 224 + DL E+S+ ++ + ++ Q A + L +L A Sbjct: 183 LTLVDLNRQEESSTGGQAATHMPVALLPQRNTLVLAQCEARLPNL--DTLERVLDAATEG 240 Query: 225 SNPL 228 + Sbjct: 241 CRAV 244 >UniRef50_B6AK41 3' exoribonuclease family protein, putative n=1 Tax=Cryptosporidium muris RN66 RepID=B6AK41_9CRYT Length = 250 Score = 149 bits (375), Expect = 1e-34, Method: Composition-based stats. Identities = 48/230 (20%), Positives = 88/230 (38%), Gaps = 19/230 (8%) Query: 1 MRPAGRSNNQVRPVTLTR--NYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGW 58 R GR N++R ++ + ++ SV E G TK++ + + G Sbjct: 16 FRIDGRRFNEIRRISCKISNGTSNLSDSSVYYEQGQTKLITSICGPIPLLNSSSQSGI-Q 74 Query: 59 ITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDV 118 + + M P T R R GK E +I R +A+ + + I ++ +V Sbjct: 75 LHCNFRMSPFCTPDRRKR----GKNDRFCTENSLIITRTFESAI-SEIYVKSQIIININV 129 Query: 119 LQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYV 178 L+ADGG R+A+I +AL +A MK +V + ++G+ + D+ Sbjct: 130 LEADGGVRSAAINATSLALANA-----------GIGMKDLVISSTIGLYGRIPLYDIVQA 178 Query: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 E +T M+ + I + L +LL + + Sbjct: 179 EFDVLKTIMSFAIYSTDENIAPITMELNTKVDEDILNLLLEHSAAACKHI 228 >UniRef50_B4LC44 GJ11305 n=2 Tax=Drosophila RepID=B4LC44_DROVI Length = 423 Score = 148 bits (374), Expect = 1e-34, Method: Composition-based stats. Identities = 48/249 (19%), Positives = 92/249 (36%), Gaps = 32/249 (12%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR +N+ R V LT G+V V G+TKVL S + G P + +G + Sbjct: 29 RFDGRKSNEFRDVKLTFGAD---WGTVAVSIGETKVLAQVSCDIGTPSSARA-NEGTLFL 84 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRA--AVDLKALG------EFTIT 113 + + A+ R + + L+ R ++ +DL++L + + Sbjct: 85 NVDIKGVAFLD-----EAQATHDQRFLTLNSLLERTFKSSRCLDLESLCIAVEQSVWCVR 139 Query: 114 LDCDVLQADGGTRTASITGACVALVDALQKLV----------ENGKLKTNPM--KGMVAA 161 +D +VL DG AS A AL+ + V + + P+ + Sbjct: 140 VDINVLNHDGNLYDASTIAALAALMHFRRPEVSYVEEEIRTFSERERELLPLLFLHYPVS 199 Query: 162 VSVGIVN--GEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLA 219 V+ + + + D +E++AA++ + + + + P ++ Sbjct: 200 VTYCVYKSSSQPLVDPTLLEENAADSVIVLSFNSYQELCTLNAGGT-APTNVRTIMQCAR 258 Query: 220 LARGESNPL 228 A S L Sbjct: 259 SAASRSKAL 267 >UniRef50_UPI00015B5B6C PREDICTED: similar to ENSANGP00000009222 n=2 Tax=Apocrita RepID=UPI00015B5B6C Length = 270 Score = 148 bits (373), Expect = 2e-34, Method: Composition-based stats. Identities = 44/239 (18%), Positives = 87/239 (36%), Gaps = 14/239 (5%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQG----Q 56 +R GR ++R + L A+GS +E G TK+L T + Sbjct: 12 LRADGRRPLELRRIRLRMGVFGQADGSAYLEQGKTKILATVYGPHQPRGKANANALKAVK 71 Query: 57 GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 G + +Y S ++ +G ++ E + + A+ A ++L+ I + Sbjct: 72 GIVNCQYSTAVFSFGAGERKKKPRG--DRKSQERSQQLRHAMEAIINLELFARSQIDIFV 129 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLE 176 +VLQ DG ++ A +AL+DA + + + + + G + D Sbjct: 130 EVLQVDGSDFCVAVNAATLALIDAGIPIKDYAIGCSVTVSDNLLGDDDDSGQGTGILDAN 189 Query: 177 YVEDSAAETDMNVV-------MTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 ++E+ + ++VV TE + + G+ L L A + Sbjct: 190 WIEECSPGVTLSVVALPKVVDETETKSSVILC-HGAGQRLHLSRLEPLRLRALQGCRDI 247 >UniRef50_UPI0000DB70B0 PREDICTED: similar to exosome component 9 n=2 Tax=Apocrita RepID=UPI0000DB70B0 Length = 396 Score = 148 bits (373), Expect = 2e-34, Method: Composition-based stats. Identities = 39/240 (16%), Positives = 84/240 (35%), Gaps = 30/240 (12%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +R GRS + RPV + Y GS +V G T+V+ + + P+ +G + Sbjct: 22 IRLDGRSLLEARPVKI---YFASNWGSCMVLLGQTRVIAQVTCDIQQPKT-SRPNEGMLH 77 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARA--------LRAAVDLKALGEFTI 112 + P + + G+Q ++ I R + + L + + + + Sbjct: 78 INVELNPMAAQHFD-----SGRQSEISILISRQLEKCYQDSKCIDLESLCIIADKKVWNL 132 Query: 113 TLDCDVLQADGGTRTASITGACVALVDALQKLVENG----------KLKTNPMK--GMVA 160 +D +V+ DG + AL + V + + P+ Sbjct: 133 RVDINVINHDGNLIDCASIATLAALSHFHRPDVTSNGEDIIVHPFSEKDPLPLTLYHYPV 192 Query: 161 AVSVG-IVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLA 219 VS +G V D Y+E+ + + + + + + T E+++ ++ Sbjct: 193 CVSFITFESGNTVMDPTYLEERIGVAQLTLGINSYRELCSLHFNYLTKTMTVEDVISAVS 252 >UniRef50_B6K5V8 Exosome complex exonuclease RRP43 n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6K5V8_SCHJY Length = 274 Score = 148 bits (373), Expect = 2e-34, Method: Composition-based stats. Identities = 40/240 (16%), Positives = 79/240 (32%), Gaps = 20/240 (8%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +RP GR+ ++ RP + A+GS +V G++ +C E P L+ +GWI Sbjct: 31 VRPDGRTVSEFRPRVVNTQCISTADGSCIVRAGESVFVCGIKAEIAEP-ELEAPSRGWIV 89 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARA----LRAAVDLKALGEFTITLDC 116 M P + Q + +++ + L + + + + D Sbjct: 90 PNVEMGPLCNGKFKPGPPRELAQVVSEQ-MNQVLEQTCLVPLESLCIREKKAAWCLYADI 148 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLK-------------TNPMKGMVAAVS 163 L DG + AL V + + + + + S Sbjct: 149 VCLNYDGNAFDCAWKALMHALETTRLPAVVWDEDEERVVCVHDERAKHPLALSSHIESFS 208 Query: 164 VGIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARG 223 + + D E+S + +++ GRI ++ G L L +A+ Sbjct: 209 WTVFGNCVLADPTDDEESLCVERLTIMLDNAGRICKLVKMG-GTHIQKGLLKGCLQIAKE 267 >UniRef50_Q9M209 Nucleolar autoantigen-like protein n=15 Tax=Embryophyta RepID=Q9M209_ARATH Length = 438 Score = 147 bits (372), Expect = 2e-34, Method: Composition-based stats. Identities = 52/250 (20%), Positives = 91/250 (36%), Gaps = 35/250 (14%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +R GR R +T+ GS V+ G T V+ + + P + +G ++ Sbjct: 27 LRVDGRGLYDYRKLTIKFG---KEYGSSEVQLGQTHVMGFVTAQLVQP-YKDRPNEGSLS 82 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRA--AVDLKALGE------FTI 112 P + + G+ G +E+ R+I R LR AVD ++L +++ Sbjct: 83 IFTEFSPMADPSFEP-----GRPGESAVELGRIIDRGLRESRAVDTESLCVLAGKMVWSV 137 Query: 113 TLDCDVLQADGGTRTASITGACVALVDALQKL---------------VENGKLKTNPMKG 157 +D +L G A+ A AL+ + +E + + Sbjct: 138 RIDLHILDNGGNLVDAANIAALAALMTFRRPDCTVGGENGQEVIIHPLEEREPLPLIIHH 197 Query: 158 MVAAVSVGIVN--GEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELL 215 + A + G N V D YVE++ M V + +G I +Q E +L Sbjct: 198 LPIAFTFGFFNKGNIVVMDPTYVEEAVMCGRMTVTVNANGDICAIQKPGEEG-VNQSVIL 256 Query: 216 ILLALARGES 225 L LA + Sbjct: 257 HCLRLASSRA 266 >UniRef50_B0CRI0 Predicted protein n=6 Tax=Agaricomycotina RepID=B0CRI0_LACBS Length = 284 Score = 147 bits (372), Expect = 2e-34, Method: Composition-based stats. Identities = 44/251 (17%), Positives = 79/251 (31%), Gaps = 31/251 (12%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +R GR ++R T+T G V G T+VL + P + +G IT Sbjct: 22 LRLDGRLPLEMRSPTITFGPD---LGWVECGLGKTRVLAQVEAKMVKP-APERPFEGTIT 77 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARAL--------RAAVDLKALGEFTI 112 + P ++ G+ + I R++ + L + L + I Sbjct: 78 IHSEISPMASSEYEPGR---GRPSDEEVAITRMLDKVLKRSDAVDKESLCILAGQRVWHI 134 Query: 113 TLDCDVLQADGGTRTASITGACVALVDALQKLVE------------NGKLKTNPMKGMVA 160 L L G + AL + VE + + Sbjct: 135 RLTLHFLADAGNMLDCACLAGITALRHFRRPDVEVVGDEVIVHSPLDRAPVPLAIHHTPF 194 Query: 161 AVSVGIVNGE---AVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLIL 217 + V D +E + +++ + I +Q G P EE+L L Sbjct: 195 CFTFAFFPDITTPPVLDPNQLEQRLSAGLVSIALNAQKEICVLQKLG-GVPLETEEVLSL 253 Query: 218 LALARGESNPL 228 + +A G++ L Sbjct: 254 VNVAVGKAKEL 264 >UniRef50_B5XC68 Exosome complex exonuclease MTR3 n=2 Tax=Euteleostei RepID=B5XC68_SALSA Length = 277 Score = 147 bits (371), Expect = 3e-34, Method: Composition-based stats. Identities = 48/240 (20%), Positives = 82/240 (34%), Gaps = 32/240 (13%) Query: 2 RPAGRSNNQV--RPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQ-GW 58 R GR QV R V + A+GS +E G+TK++C R + + G Sbjct: 36 RVDGRQRGQVDVRSVFVRCGLISQAKGSAYIEAGNTKLICCVYGPRETERKDETDMKSGR 95 Query: 59 ITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDV 118 + + P S R QG ++ ++ +LR V L+ I ++ V Sbjct: 96 LITDMRFAPFSCRER-----GSWIQGSDEKDLSLMLLESLRPGVCLQKYPRSQIEVNVMV 150 Query: 119 LQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYV 178 L+ DG ++T A +AL DA M +V S+ + D ++ Sbjct: 151 LENDGAVLAHAVTCASMALADA-----------GIEMYDLVLGCSIRQEGATYLIDPTFL 199 Query: 179 EDSAAE---------TDMNVVM-TEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 E++ + V +I +Q E + L + L Sbjct: 200 EENGCNLASGSRENLGSLTVAFLPSLNQISGLQSDGEMG---EDTLTGGVRTCIEGCFKL 256 >UniRef50_A2DCK7 3' exoribonuclease family, domain 1 containing protein n=1 Tax=Trichomonas vaginalis RepID=A2DCK7_TRIVA Length = 241 Score = 147 bits (370), Expect = 3e-34, Method: Composition-based stats. Identities = 47/229 (20%), Positives = 81/229 (35%), Gaps = 22/229 (9%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +R GR N++R V GS + G T+V+ G I Sbjct: 10 LRIDGRPPNEMRLVEAKIGTIPGCTGSSHFKIGQTEVIAQIFGPRD---NRSGDNAAEIR 66 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 + + A+ R E + ++ R A+ + I + V+Q Sbjct: 67 VTFEYADFA----KVPHASDTSMTRRGRESEVIMKRTFEEAIKRELFPHSKILIAITVIQ 122 Query: 121 ADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVED 180 DG ++A+I A +AL+DA PM V +++V + + + D E Sbjct: 123 DDGSCQSAAINAATLALIDA-----------GIPMFDFVVSMTVALYDDKCFLDAGRAES 171 Query: 181 SAAETDMNV-VMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 +A + V + I+ + TA EP + L +A A L Sbjct: 172 NARFPVLEVSIFPSTSEILSMNLTARIEPQASKNL---MAAAIDGCKEL 217 >UniRef50_UPI0000D569CA PREDICTED: similar to exosomal 3-5 exoribonuclease complex subunit Rrp41-like protein n=3 Tax=Endopterygota RepID=UPI0000D569CA Length = 282 Score = 147 bits (370), Expect = 3e-34, Method: Composition-based stats. Identities = 46/239 (19%), Positives = 87/239 (36%), Gaps = 31/239 (12%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR++ + R + L A+GS +E TKV+ + +P +G I Sbjct: 42 RADGRTSTEHRKIFLKTGVVSQAKGSAYIELDQTKVIVSVFDPREIPNKTDYSSKGEIYC 101 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQA 121 E+ P S H R +Q + ++ +AL +AV F + + VL Sbjct: 102 EFKFAPFSCHKRR-----LHQQDAEEQQFSAIMKQALESAVFRHEFPNFQVDIYAMVLHN 156 Query: 122 DGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDS 181 DG +A+IT A VAL A PM ++ +V++ + + D E+ Sbjct: 157 DGAALSAAITAAGVALAHA-----------GIPMYDLITSVTLAVQGNHLLVDPTLEEER 205 Query: 182 AAET------------DMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 + + V+ +I + + ++ L + + + + Sbjct: 206 LCQVPLFKEEENNHGIVVLSVLATHEQISQFYQSGY---LSYACLSSGIEMLTNAAKDI 261 >UniRef50_UPI000192764A PREDICTED: similar to Exosome component 8 n=1 Tax=Hydra magnipapillata RepID=UPI000192764A Length = 272 Score = 146 bits (369), Expect = 4e-34, Method: Composition-based stats. Identities = 43/244 (17%), Positives = 89/244 (36%), Gaps = 24/244 (9%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +RP GR+ ++ R + N K A GS LV G+T V+C L Sbjct: 22 IRPDGRALDEYRKTIVNINSIKTASGSGLVRIGNTIVVCGIKA-----VSLFLNFCLPNV 76 Query: 61 AEYGMLPRSTHTRNAREAAKGKQG-----GRTMEIQRLIARALRAAVDLKALGEFTITLD 115 + +H + Q T+E +LI L+ + + I D Sbjct: 77 PNVDLPALCSHEFRPGPPSDQAQAMSQLVAETVENCKLIN--LKKLCIKEKKLCWVIYAD 134 Query: 116 CDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNP-----------MKGMVAAVSV 164 + DG A I +AL++ +V + +P + +++ +V Sbjct: 135 IICISHDGNLIDAIIASLYIALLNTKLPVVTINEETGSPEASPTEQFTLELTTRLSSTTV 194 Query: 165 GIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGE 224 +++ + + D Y E+ + + + +++ ++ II + G + + + A Sbjct: 195 ELIDNKLLVDPTYEEEQLSLSSLTIILGDEKNIISMYKPG-GCSVNEDSVRTCIKYAIHR 253 Query: 225 SNPL 228 + L Sbjct: 254 AEEL 257 >UniRef50_A8IE44 3'-5' exoribonuclease PH component of the exosome n=1 Tax=Chlamydomonas reinhardtii RepID=A8IE44_CHLRE Length = 296 Score = 146 bits (369), Expect = 4e-34, Method: Composition-based stats. Identities = 55/254 (21%), Positives = 91/254 (35%), Gaps = 36/254 (14%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +R GR N +R + S V G T+V+ S P + +G + Sbjct: 26 VRLDGRRPNDMRKPKFQFSLDDR---SCTVAQGSTRVMAVVSAALEAP-YPDRPSEGPLR 81 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRA--AVDLKALGE-------FT 111 P ++ GK G +++ RLI R LR AVD +AL + Sbjct: 82 FNVEFSPMASPAFEP-----GKPGEDAIQVARLIERGLRQSGAVDQEALWVGAGRVRVWA 136 Query: 112 ITLDCDVLQADGGTRTASITGACVALVDALQKLVENG---------------KLKTNPMK 156 + +DC VL G A AL+ + VE G + + Sbjct: 137 LRVDCHVLDHGGNLLDCCFLAALAALMAFRKPEVEVGGESGSEIIVHPPEVREPVPLTIH 196 Query: 157 GMVAAVSVGIV--NGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEEL 214 + AV+ + V D + E++AA VVM + V A+G + E+ Sbjct: 197 HLPVAVTFALFQAGDMLVADPTWKEEAAAAGSCTVVMNPAQEVCCVHK-ADGIGLSPEQF 255 Query: 215 LILLALARGESNPL 228 + + LA ++ + Sbjct: 256 MRCVRLAGRQAEEV 269 >UniRef50_B2AVV7 Predicted CDS Pa_7_1650 n=9 Tax=Leotiomyceta RepID=B2AVV7_PODAN Length = 297 Score = 145 bits (367), Expect = 8e-34, Method: Composition-based stats. Identities = 51/251 (20%), Positives = 87/251 (34%), Gaps = 33/251 (13%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +R GR Q RP+ LT G V G T+VL AS E VP + G Sbjct: 23 VRLDGRELEQYRPLELTFG---DQYGVADVTLGKTRVLAKASAELTVP-YADRPLDGIFN 78 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRA--AVDLKALG------EFTI 112 + P ++ + I RL+ + +R A+D ++L ++I Sbjct: 79 IATELSPMTSPAFEVNR-----PTETEVLISRLLEKTVRRSGALDTESLCLVAGQKCWSI 133 Query: 113 TLDCDVLQADGGTRTASITGACVALVDALQK----------LVENGKLKTNPMK--GMVA 160 +D VL DG A+ AL + + + + P+ Sbjct: 134 RVDVHVLSHDGNLIDAACFAVVAALRHFRKPDTSMEGGVLTVYTPAEREPVPLSWLHSPF 193 Query: 161 AVSVGIVNGE---AVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLIL 217 V+ E AV D ++E+ + + + G I ++ G P LL Sbjct: 194 CVTWSFFGEEGDVAVLDATWMEEQVRSGSCTISLNKHGEICQIAKLG-GVPVEAVSLLQC 252 Query: 218 LALARGESNPL 228 +A ++ + Sbjct: 253 TNVALVKAKDM 263 >UniRef50_UPI00006CFE64 3'''' exoribonuclease family, domain 1 containing protein n=1 Tax=Tetrahymena thermophila RepID=UPI00006CFE64 Length = 240 Score = 145 bits (367), Expect = 8e-34, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 88/229 (38%), Gaps = 20/229 (8%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 R GR N++R V + + EGS + G T+++C + + +G++ Sbjct: 11 FREDGRKKNELRKVDCILGFDQTVEGSCKLIQGLTEIVCLIKGPHNK--STRRESEGFLN 68 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 +Y + P S R K E + + + + + LG I + V+Q Sbjct: 69 VQYNVAPFSGTDRRK----ISKFDKDWNEFTENLRVSFESVILTEQLGSGEIDIIVSVIQ 124 Query: 121 ADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVED 180 ADG +++ +AL+DA PMK + +V +N E + D Y E Sbjct: 125 ADGSAKSSIFNAISLALMDA-----------GIPMKDFTVSSTVISLNSEILLDATYQEQ 173 Query: 181 SAAETDMNVV-MTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 A ++ + + ++ ++ + + ++ + +A + Sbjct: 174 KKASAELIISYLPRSDQVDFMEM--KSSKISQQDTKEMCKIAVDGCKQM 220 >UniRef50_UPI000180CDA2 PREDICTED: similar to Exosome complex exonuclease MTR3 (mRNA transport regulator 3 homolog) (Exosome component 6) n=1 Tax=Ciona intestinalis RepID=UPI000180CDA2 Length = 276 Score = 145 bits (367), Expect = 9e-34, Method: Composition-based stats. Identities = 52/240 (21%), Positives = 84/240 (35%), Gaps = 32/240 (13%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQ-GQGWIT 60 R GR Q R V L A+GS E TKV+C+ + + + Q +G + Sbjct: 35 RADGRYVTQPRDVFLQCGVITQAKGSAYFEMNKTKVICSVYGPKDIEMREEFQINKGKLK 94 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 E P S+ G +E ++ A+ + V L+ + I + VL+ Sbjct: 95 CELKYAPYSSPK-----HGDHIPGASDVEKSDILLEAISSGVCLQRYPKSQIDVYVIVLE 149 Query: 121 ADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVN-GEAVCDLEYVE 179 DG A+IT A VALVDA M ++ A S+ I + D E Sbjct: 150 DDGSVMPAAITAASVALVDA-----------GIEMYDVITASSIRIAGQDTFIIDPTSSE 198 Query: 180 DSAA-----------ETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 + + M ++ ++ V + E L + R + L Sbjct: 199 EFSPLNLEKSNDLNQGMVMVALLPSINQVSSVVSSGHLEC---NVLQEAIRSCRYSAQNL 255 >UniRef50_Q4P9I6 Putative uncharacterized protein n=1 Tax=Ustilago maydis RepID=Q4P9I6_USTMA Length = 273 Score = 145 bits (366), Expect = 1e-33, Method: Composition-based stats. Identities = 45/231 (19%), Positives = 71/231 (30%), Gaps = 21/231 (9%) Query: 1 MRPAGRSNNQVRPVTLTRN--YTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLK-GQGQG 57 R GR ++R + + A+G + G T V T + Sbjct: 12 FRIDGRKQFELRSIGIQLGGSQDTAADGCAQITQGLTIVSATVFGPREARSGANVMHDRA 71 Query: 58 WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCD 117 + E + P + R R + +E I + I + Sbjct: 72 SVNVEVSVAPWGSMERRRRNRGDRRL----VEFANSIKSTFEPVIHTHLYPRSQIDIFVQ 127 Query: 118 VLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEY 177 V Q DGG A+I + +AL+DA M+ VA+VS GI + A+ DL Sbjct: 128 VHQQDGGVLPAAINASTLALLDA-----------GIAMQDFVASVSCGIHSTSAMLDLSN 176 Query: 178 VEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 E+ V+ +I E + LA L Sbjct: 177 TEEQDLPHVTVAVLPRTKQITLASL---ETRLHVERFEQIFTLAIQAVAVL 224 >UniRef50_B3T6G8 Putative 3' exoribonuclease family, domain 1 n=1 Tax=uncultured marine microorganism HF4000_APKG2H5 RepID=B3T6G8_9ZZZZ Length = 264 Score = 145 bits (365), Expect = 1e-33, Method: Composition-based stats. Identities = 49/238 (20%), Positives = 87/238 (36%), Gaps = 18/238 (7%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R +GR + R L AEGS V GDT V ++ VP + QG + Sbjct: 23 RHSGRGRWEARDTELEIGVLPRAEGSARVRMGDTIVYAGVKLQIMVP-YPDRPNQGGLMC 81 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRA--AVDLKALG------EFTIT 113 + P + G ++E+ R++ R +R +D+ L + + Sbjct: 82 SAEVRPVAGPNWEP-----GPPSPESIELGRVVDRGIRESGCIDVDGLCLIPGEKAWQVI 136 Query: 114 LDCDVLQADGGTRTASITGACVALVDALQKLVE---NGKLKTNPMKGMVAAVSVGIVNGE 170 LD + DG A A+ A+ +G+ + + S V G Sbjct: 137 LDLFAISDDGNLFDAFALAGIAAMRTAMIPEERFEISGEDRPLNISKTPIMCSYHKVGGR 196 Query: 171 AVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 V D + E+ + +++ + +DG + +Q FT E ++ A+ N L Sbjct: 197 FVYDADGREELGGDERIHITLGDDGHVHSLQK-GLRGIFTASEFTEIMEHAQSRCNEL 253 >UniRef50_UPI0000E45C6E PREDICTED: similar to SCL75 protein n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000E45C6E Length = 437 Score = 145 bits (365), Expect = 1e-33, Method: Composition-based stats. Identities = 44/249 (17%), Positives = 80/249 (32%), Gaps = 32/249 (12%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR R + + G +V GDT++L S E P+ +G + Sbjct: 21 RLDGRQPYDYRRTKIEFGVER---GCCMVHMGDTRILAQVSCEVVEPKE-NRPNEGQLFV 76 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARAL--------RAAVDLKALGEFTIT 113 + P ++ T A G+ +E+ RL+ R + + + + I Sbjct: 77 NLELSPMASTTFEA-----GRLSDYGIELNRLLERTVKDSRAVDVESLCIVAGEKVWKIR 131 Query: 114 LDCDVLQADGGTRTASITGACVALVDALQKLVE------------NGKLKTNPMKGMVAA 161 LD VL DG ++ A AL + V + + + Sbjct: 132 LDVHVLNHDGNILDSACLAALAALSHFRRPDVTVIGESVTIHSPQDRDPVPLNVHHIPVC 191 Query: 162 VSVGIV--NGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLA 219 V+ + D E+ E M V M + +Q T E+++ Sbjct: 192 VTFAFYHKGKRLLVDPTEKEEKVMEGTMVVGMNVHRELCTMQVTGSMLIL-KEQIIRCCQ 250 Query: 220 LARGESNPL 228 + + + L Sbjct: 251 IGVVKVSEL 259 >UniRef50_Q84T68 Os03g0854200 protein n=9 Tax=Magnoliophyta RepID=Q84T68_ORYSJ Length = 238 Score = 145 bits (365), Expect = 1e-33, Method: Composition-based stats. Identities = 47/242 (19%), Positives = 83/242 (34%), Gaps = 39/242 (16%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR+ NQ+RP + TRN A GS GDT VL + R + + I Sbjct: 5 RADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRKGENPEKASIEV 64 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQA 121 + G+ G + E + + R L++ L T ++ V+ Sbjct: 65 VWK-------------PMTGQIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGN 111 Query: 122 DGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVG-IVNGEAVCDLEYVED 180 DG +I C ALV A P+K + A+ G + +GE + D E+ Sbjct: 112 DGSLLPCAINACCAALVFA-----------GIPLKHLAVAIGCGVLEDGEVILDTNKAEE 160 Query: 181 SAAETDMNVVMTEDGRII--------------EVQGTAEGEPFTHEELLILLALARGESN 226 ++ ++V + + + + E+ + S+ Sbjct: 161 QQLKSFAHLVFPNSRKSASSKEPNQKEEDSERGLITSITHGVMSEEDYFSCIERGLAASS 220 Query: 227 PL 228 + Sbjct: 221 RI 222 >UniRef50_Q5BZN7 SJCHGC06185 protein (Fragment) n=1 Tax=Schistosoma japonicum RepID=Q5BZN7_SCHJA Length = 251 Score = 144 bits (363), Expect = 2e-33, Method: Composition-based stats. Identities = 38/190 (20%), Positives = 71/190 (37%), Gaps = 15/190 (7%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKG-QGQGWIT 60 R GR N++R V + +++G V + G+TKV+ + G I Sbjct: 3 RVDGRRPNELRRVHCQFG-SGNSDGIVFLHQGNTKVIASVVGPHAPRTKGDGNPDGATII 61 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 ++ P ++ + R+ A + I V + I + +V+Q Sbjct: 62 CQFTKPPFASTSGERRKVASN--DRSANDFSTAIEEIFSCVVRTEKYPMSQIDIFLEVIQ 119 Query: 121 ADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVED 180 +DG ++ +AL DA M +V+A +VG+ DL E+ Sbjct: 120 SDGSEFACAVNATTLALTDA-----------GIEMHYLVSAATVGLWGSRVFADLCRFEE 168 Query: 181 SAAETDMNVV 190 + + + VV Sbjct: 169 NPRLSQLTVV 178 >UniRef50_Q15024 Exosome complex exonuclease RRP42 n=27 Tax=Eumetazoa RepID=EXOS7_HUMAN Length = 291 Score = 144 bits (363), Expect = 2e-33, Method: Composition-based stats. Identities = 42/252 (16%), Positives = 85/252 (33%), Gaps = 31/252 (12%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +R GR R V + + + GS V+ G T +L E G P+ L+ +G++ Sbjct: 22 LRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPK-LEKPNEGYLE 80 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARAL--RAAVDLKALG------EFTI 112 +T R EI + R +++VDLK L + + Sbjct: 81 FFVDCSASATPEFEGRGG-----DDLGTEIANTLYRIFNNKSSVDLKTLCISPREHCWVL 135 Query: 113 TLDCDVLQADGGTRTASITGACVALVDALQKLVENGKLKT----------------NPMK 156 +D +L+ G A AL + V + + ++ Sbjct: 136 YVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGSKDIELSDDPYDCIRLSVE 195 Query: 157 GMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLI 216 + V++ + V D E++ + + V +T G + ++ + E + Sbjct: 196 NVPCIVTLCKIGYRHVVDATLQEEACSLASLLVSVTSKGVVTCMRKVGK-GSLDPESIFE 254 Query: 217 LLALARGESNPL 228 ++ + L Sbjct: 255 MMETGKRVGKVL 266 >UniRef50_Q7QBX4 AGAP002348-PA (Fragment) n=2 Tax=Endopterygota RepID=Q7QBX4_ANOGA Length = 260 Score = 144 bits (363), Expect = 3e-33, Method: Composition-based stats. Identities = 49/247 (19%), Positives = 88/247 (35%), Gaps = 32/247 (12%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR+ ++ R + ++ G V V G+T+ L + E P+ +G + Sbjct: 10 RLDGRTLDEFRKLRISFG---SEWGLVHVILGETRALARITCEVVEPKA-TRPNEGMLFL 65 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALR--AAVDLKALG------EFTIT 113 + P + + G+Q +++ R++ RAL+ VDL++L + + Sbjct: 66 NVELGPMAAPHFDG-----GRQSDECVQLNRILERALKDSNCVDLESLCLVSEEKVWKLR 120 Query: 114 LDCDVLQADGGTRTASITGACVALVDALQKL------------VENGKLKTNPMKGMVAA 161 +D VL +G A AL + +E + Sbjct: 121 VDVTVLNHEGNAIDCCSIAALTALAHFKRPDITVDGEDVIVHTIEEKDPLKVTLFHYPLC 180 Query: 162 VSVGIVN--GEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLA 219 VS I N A+ D Y+E+ AE M + G + + + E LL A Sbjct: 181 VSYAIFNQGKIAIADPTYLEERVAEARMVFGLNSYGELCGLHLGGTTLT-SAELLLRTSA 239 Query: 220 LARGESN 226 A + Sbjct: 240 KASKRAR 246 >UniRef50_UPI000192526B PREDICTED: similar to predicted protein n=1 Tax=Hydra magnipapillata RepID=UPI000192526B Length = 426 Score = 144 bits (362), Expect = 3e-33, Method: Composition-based stats. Identities = 40/240 (16%), Positives = 72/240 (30%), Gaps = 31/240 (12%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 R GRS N R +T+ + GS V+ T VL E P G + Sbjct: 22 FRTDGRSCNDYRAITVQTGIISNTSGSAQVKLAGTNVLIGVKAEISEPL-PSKPNLGKVE 80 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALG------EFTITL 114 ++ R E+ + A+DL+ L + + + Sbjct: 81 F---FSANASPIFEGRGG-----DELAFELSAALQNTFSGAIDLEKLCIIPGKACWILYI 132 Query: 115 DCDVLQADGGTRTASITGACVALVDALQKLV---------------ENGKLKTNPMKGMV 159 D VL+ G A AL + + + + + Sbjct: 133 DALVLECGGNLFDALSIAVKAALHNTRIPTLSIIGEGAEKSIEVSDDPYNSTPIDVSNIP 192 Query: 160 AAVSVGIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLA 219 V++ V + D E+ ++ + V + + G + VQ G + L +L Sbjct: 193 VLVTLNKVGERYIVDATAEEEICSDAQLLVSINQKGNVCSVQKHGSGG-INPDLLFEMLK 251 >UniRef50_B0CZF3 Predicted protein n=1 Tax=Laccaria bicolor S238N-H82 RepID=B0CZF3_LACBS Length = 276 Score = 144 bits (362), Expect = 3e-33, Method: Composition-based stats. Identities = 44/247 (17%), Positives = 85/247 (34%), Gaps = 23/247 (9%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +RP GR N R + + A+GS LV G+T V+C E P +G +G++ Sbjct: 27 VRPDGRPLNVARDLAVNVGSISTADGSALVRLGNTTVVCGVKAEIAEPELDEGV-RGFLV 85 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGE---FTITLDCD 117 + + ++ Q L+A + L + + +D Sbjct: 86 PNLDLPAMCSPRFKPGPPSEEAQVLSDRLNDALVASNILPLTSLSIHPNKAAWVLYVDAI 145 Query: 118 VLQADGGTRTASITGACVALVDALQKLVENGKLKT---------NPM----KGMVAAVSV 164 + DG A++ AL + + P+ + +S Sbjct: 146 CINYDGNVFDAALIAMVEALRNTQLPKATYDEETGRTTCSRKIKVPLELNHTSLPVPLSF 205 Query: 165 GIVN-GEAVCDLEYVEDSAAETDMNVVMTEDG--RIIEVQGTAEGEPFTHEELLILLALA 221 G+ + + D E+ +T ++++M+ R+I V G + LL + A Sbjct: 206 GVFDSTHVLADPTSFEEPLLDTTISIIMSNANPDRLISVSQLGAGGN---DALLTCVEAA 262 Query: 222 RGESNPL 228 R + Sbjct: 263 RVRCREI 269 >UniRef50_P46948 Exosome complex component SKI6 n=12 Tax=Saccharomycetaceae RepID=RRP41_YEAST Length = 246 Score = 143 bits (361), Expect = 4e-33, Method: Composition-based stats. Identities = 47/228 (20%), Positives = 91/228 (39%), Gaps = 19/228 (8%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHA-EGSVLVEFGDTKVLCTASIEEGVP-RFLKGQGQGW 58 +R GR N++R + N HA +GS +E G+ K++ + + + Sbjct: 12 LRLDGRRWNELRRFESSINTHPHAADGSSYMEQGNNKIITLVKGPKEPRLKSQMDTSKAL 71 Query: 59 ITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDV 118 + + S R+ + K R +EIQ + R V L I ++ V Sbjct: 72 LNVSVNITKFSKFERSK---SSHKNERRVLEIQTSLVRMFEKNVMLNIYPRTVIDIEIHV 128 Query: 119 LQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYV 178 L+ DGG + I G +AL+DA M ++ +SVG+ + + D + Sbjct: 129 LEQDGGIMGSLINGITLALIDA-----------GISMFDYISGISVGLYDTTPLLDTNSL 177 Query: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESN 226 E++A T V+ + ++ + + + L +LA+ ++ Sbjct: 178 EENAMSTVTLGVVGKSEKLSLLLVEDK---IPLDRLENVLAIGIAGAH 222 >UniRef50_D0MYG3 Polyribonucleotide nucleotidyltransferase, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0MYG3_PHYIN Length = 893 Score = 142 bits (359), Expect = 6e-33, Method: Composition-based stats. Identities = 46/249 (18%), Positives = 80/249 (32%), Gaps = 26/249 (10%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI---------------EE 45 +R GR VRP+ + A GS L G+T+ LC+ ++ Sbjct: 403 VRLDGRPVRIVRPLEMKAAVLPMAHGSSLFARGETQTLCSVTLGPLERGIRLRGALHEAR 462 Query: 46 GVPRFLKGQGQGWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLK 105 Y P + G R + L +A+ + Sbjct: 463 EQAERDAPAPFKHAMLHYEFPPFCVNE----TGRVGGTNRRMIGHGALAEKAVLPILPSI 518 Query: 106 ALGEFTITLDCDVLQADGGTRTASITGACVALVDALQKLVE--NGKLKTNPMKGMVAAVS 163 +T+ + +V+ +DG + A++ G +AL+DA + G G A Sbjct: 519 TEFPYTVRMTSEVVGSDGSSSMATVCGVSLALMDAGVPVRRAVAGIAIGLVTAGDPFACQ 578 Query: 164 VGIV---NGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEG-EPFTHEELLILLA 219 + N + V D+ ED + D V T G + +Q + L L Sbjct: 579 EKRIEEGNYQLVTDILGSEDHYGDMDFKVAGTTSG-VTALQLDVKLPGGVPLFVLKEGLR 637 Query: 220 LARGESNPL 228 A+ + Sbjct: 638 EAKHARLHI 646 Score = 61.6 bits (148), Expect = 2e-08, Method: Composition-based stats. Identities = 35/204 (17%), Positives = 63/204 (30%), Gaps = 20/204 (9%) Query: 24 AEGSVLVEFGDTKVLCTA-----SIEEGVPRFLKGQGQGWITAEYGMLPRSTHTRNAREA 78 A+G+VL G T +L T V + +T ++ + + + Sbjct: 94 ADGAVLASCGRTVLLTTVVSGDHHGNPSVNGGSTQRDFLPLTVDFRVKSHAVGLIPDNQK 153 Query: 79 AKGKQ-GGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTASITGACVAL 137 + + R++ RA+R + + ++ A L Sbjct: 154 RREFTGSDEEVLQSRVVDRAIRPLFPRDYCENTQVLATVQSYDPNNDPLVVAVNSASAVL 213 Query: 138 VDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRI 197 + P G V V V V+G+ V + + AA D+ T + Sbjct: 214 -----------SMSDIPWDGPVGCVRVVEVDGQLVVNPTAPQREAATMDVLYAGTAE--- 259 Query: 198 IEVQGTAEGEPFTHEELLILLALA 221 + A G+ T L L LA Sbjct: 260 HAIMVEASGDEVTEARLDEALDLA 283 >UniRef50_B3L6X6 Exosome complex exonuclease, putative n=5 Tax=Plasmodium RepID=B3L6X6_PLAKH Length = 514 Score = 142 bits (359), Expect = 8e-33, Method: Composition-based stats. Identities = 43/250 (17%), Positives = 87/250 (34%), Gaps = 33/250 (13%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +R GR+ R +++ Y G+V V G TKV+C + E P F K +G I Sbjct: 19 LRLDGRNFEDSRNISI---YFFGEYGNVEVSIGHTKVICKITSEIVKP-FDKRPNEGIIK 74 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARAL--------RAAVDLKALGEFTI 112 + + +EI+ LI R L + + + + Sbjct: 75 VNLDIDSF------TNVNDNSQISDECLEIKNLIERILKSSNLLNFESLCIIPHKKVWCL 128 Query: 113 TLDCDVLQADGGTRTASITGACVALVDALQKLVENGKL------------KTNPMKGMVA 160 ++ V++ DG + A LV V + + Sbjct: 129 LVNIIVVENDGNLYDSCFLSAYSGLVHYRNNEVTVDSIGNIFIEQGETNYTPLSIHNTPI 188 Query: 161 AVSVGIVN--GEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILL 218 + N + D E+ + ++V + ++G+++ + G P ++E++L + Sbjct: 189 LTTFAYFNCEDICLIDPSIQEEEFMSSKLSVALNKNGKLVSILKPG-GSPISYEKILEAI 247 Query: 219 ALARGESNPL 228 LA+ + Sbjct: 248 ELAKKRVKSI 257 >UniRef50_C4Q0C5 Ribonuclease pH related n=1 Tax=Schistosoma mansoni RepID=C4Q0C5_SCHMA Length = 258 Score = 142 bits (357), Expect = 1e-32, Method: Composition-based stats. Identities = 37/190 (19%), Positives = 73/190 (38%), Gaps = 15/190 (7%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKG-QGQGWIT 60 R GR N++R V + +++G V + G+TKV+ + G IT Sbjct: 10 RVDGRRPNEIRRVDCQFG-SGYSDGIVFLHQGNTKVIASVVGPHAPRVKGDGTPDGATIT 68 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 ++ P ++ + R+ + + + I + + I + +V+Q Sbjct: 69 CQFTKPPFASTSGERRKLSS--KDRSANDFATAIEEIFSCVIRTEKYPMSQIDIFLEVIQ 126 Query: 121 ADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVED 180 +DG ++ +AL DA M +V+A +VG+ DL E+ Sbjct: 127 SDGSEFACAVNATTLALTDA-----------GIEMDCLVSAATVGLWGSHVFADLCRFEE 175 Query: 181 SAAETDMNVV 190 + + + VV Sbjct: 176 NPRISQLTVV 185 >UniRef50_UPI000186CF32 Exosome complex exonuclease RRP43, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186CF32 Length = 276 Score = 142 bits (357), Expect = 1e-32, Method: Composition-based stats. Identities = 45/244 (18%), Positives = 93/244 (38%), Gaps = 18/244 (7%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +RP GR+ ++ RP+++ N +A+GS +V+ G+T V+C +E P+ + QG++ Sbjct: 22 VRPDGRALDECRPISINVNSFHNADGSAIVKIGNTAVVCGVKLELAKPKA-ETPDQGYLI 80 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIAR---ALRAAVDLKALGEFTITLDCD 117 + P + Q + L+ L+A + + I LD Sbjct: 81 PNVDLPPLCSGQYQPGPPCDYAQEATKFVNEILLESQCIDLKALCIVPDRLAWVIYLDII 140 Query: 118 VLQADGGTRTASITGACVALVDALQKLVENGKLKT-----------NPMKGMVAAVSVGI 166 L DG A++ AL V +K + + ++ + Sbjct: 141 CLNQDGNLLDAALAAGIAALKVTTLPEVIYNVESGEKVVNPLKRQQLNVKKLPLSTTIAV 200 Query: 167 VN-GEAVCDLEYVEDSAAETDMNVVM-TEDGRIIEVQGTAEGEPFTHEELLILLALARGE 224 + D E+S + +++V+ + G I + EP E+ + A+ + Sbjct: 201 FKSDCLLIDPTVEEESFSSGTISIVIEADSGDICGIHQPGT-EPLKPSEIDFCITQAQVK 259 Query: 225 SNPL 228 + + Sbjct: 260 TKAV 263 >UniRef50_C4WV26 ACYPI003501 protein n=2 Tax=Acyrthosiphon pisum RepID=C4WV26_ACYPI Length = 267 Score = 141 bits (355), Expect = 2e-32, Method: Composition-based stats. Identities = 42/246 (17%), Positives = 80/246 (32%), Gaps = 27/246 (10%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR R +L N A+GS +V+ G+T V+C E GVP+ + G++ Sbjct: 22 RNDGRELMNFRDASLNLNTIHTADGSAVVKIGNTAVVCGIKAELGVPKA-EAPDIGYLLV 80 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAA--VDLKALG------EFTIT 113 + + G M++ + +DL+ L + ++ Sbjct: 81 NIELPSLCSKKIRP-----GIPCDEAMQMTSFLNEVCNNCKILDLQQLCISVDKLVWVLS 135 Query: 114 LDCDVLQADGGTRTASITGACVALVDALQKLVENGKLK----------TNPMKGMVAAVS 163 D L DG A + AL V+ K + + + + Sbjct: 136 CDIYCLNYDGSVLDACLIALLSALQTVKIPEVKYDKETEETTVIENYIPLKVNSLPVSST 195 Query: 164 VGIVNGE-AVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALAR 222 G+ N + + D E+ + + VV I + GE ++ + Sbjct: 196 FGVFNEKYILADPTEEEEQLCVSKLTVVTNGS-LIFSLHKPG-GEFIKDSQIQNCIKHVN 253 Query: 223 GESNPL 228 + + Sbjct: 254 NRAKTI 259 >UniRef50_A9VBQ1 Predicted protein n=2 Tax=Fungi/Metazoa group RepID=A9VBQ1_MONBE Length = 1336 Score = 140 bits (353), Expect = 4e-32, Method: Composition-based stats. Identities = 63/214 (29%), Positives = 90/214 (42%), Gaps = 20/214 (9%) Query: 9 NQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRF-LKGQGQGWITAEYGMLP 67 +++R V + A+GS VE G+TKVL + G ++ E+ Sbjct: 38 DELRSVKAKLGVFEQADGSAYVEQGNTKVLAIINGPHDSDARGPNASGHLTVSCEFIYAS 97 Query: 68 RSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRT 127 ST R AR + + E IAR L + V + L TI L+ VLQADGG Sbjct: 98 FSTDQRRARS----RLDRKLAEQGTRIARTLESVVMGQLLSRSTINLNVQVLQADGGVLA 153 Query: 128 ASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDM 187 +I A +A++DA PMK + A + G++ G AV D + E A D+ Sbjct: 154 TAINAASLAMMDA-----------GVPMKDFLCACNAGVLEGVAVLDTNHSEALARGPDL 202 Query: 188 NV-VMTEDGRIIEVQGTAEGEPFTHEELLILLAL 220 V VM I+ Q F EL + L L Sbjct: 203 TVAVMPRTNTIVLNQDEKRQTNF---ELTMALKL 233 >UniRef50_A0D7C7 Chromosome undetermined scaffold_4, whole genome shotgun sequence n=1 Tax=Paramecium tetraurelia RepID=A0D7C7_PARTE Length = 227 Score = 140 bits (353), Expect = 4e-32, Method: Composition-based stats. Identities = 44/227 (19%), Positives = 84/227 (37%), Gaps = 22/227 (9%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR+ Q+R + +GS L + G T+V+C + + Sbjct: 5 RQDGRNLQQMRNIEFKLAIDLSVDGSCLYKQGLTEVICLVQGPRAKTQSE------LLLI 58 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQA 121 EY + P S K + + + L G+ I++ V+Q Sbjct: 59 EYSVSPFSNIESKR----SSKFDKDYSMFAENLKESFENLIILDENGKSEISISVCVIQN 114 Query: 122 DGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDS 181 DG +++A +AL+DA MK + +V+VG+ G + DL E Sbjct: 115 DGSSKSAVFNAITLALLDA-----------GVSMKDFLVSVTVGLDQGNLIVDLTQEESK 163 Query: 182 AAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 A+ ++ + + I+ + +E+ L LA +++ + Sbjct: 164 TAQGELTISYQSRKQKIDFY-ELKTLKLQQQEMDQLSKLAVSKADEI 209 >UniRef50_Q54CU6 Putative uncharacterized protein n=1 Tax=Dictyostelium discoideum RepID=Q54CU6_DICDI Length = 293 Score = 139 bits (351), Expect = 5e-32, Method: Composition-based stats. Identities = 40/248 (16%), Positives = 82/248 (33%), Gaps = 25/248 (10%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQ------ 54 +RP GRS + +R T++ A+GS V+ G T V+C E G + Sbjct: 21 VRPDGRSLDDIRKTTISTGSITTADGSSFVKIGSTSVVCGVRAEVGEKPSIDKSKFSTLN 80 Query: 55 --GQGWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRA----AVDLKALG 108 I + P ++T ++ + + + + LI R D + Sbjct: 81 VHENKNIFINIELGPICSNTFSSSKPSDIAMSLCSR-LNSLINRLEIPETDYYFDEEGKA 139 Query: 109 EFTITLDCDVLQADGGTRTASITGACVALVDALQKLVENGKLKT-----------NPMKG 157 + + +D L DG A++ AL + ++ Sbjct: 140 LWYLYVDVYCLDYDGNIYDAAVLSIISALKNVKLPKGIIENNDEFYKDLESPQRKLNIQH 199 Query: 158 MVAAVSVGIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLIL 217 + +S +++ + D E+ + +N+ E I + + + L Sbjct: 200 YLIPLSFSVIDDYILADPSLDEEKLSSGTINITYNELNEICLLLSSGT-SLISKTNLKTC 258 Query: 218 LALARGES 225 + A+ S Sbjct: 259 MEKAKERS 266 >UniRef50_C1EDA5 Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1EDA5_9CHLO Length = 261 Score = 138 bits (348), Expect = 1e-31, Method: Composition-based stats. Identities = 47/228 (20%), Positives = 83/228 (36%), Gaps = 20/228 (8%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKG-QGQGWI 59 +R GR + R + ++GS + E G+TKVL R + + + + Sbjct: 9 LRLDGRRPKETRRMRCELTALPGSDGSAVFELGNTKVLAAVHGPHECRRPSERLEDRLLV 68 Query: 60 TAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVL 119 E M ST R R + E+ + R + V + L + + VL Sbjct: 69 KCEVSMAAFSTGERRRRTKGDRRTN----ELSTFVRRCIETCVSAELLARSQLDVSIQVL 124 Query: 120 QADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVE 179 QADGG R A+ V PM+ +A S G ++ + DL Y+E Sbjct: 125 QADGGVR-----------AAAVNAAVLAIVDAGIPMQDTMACCSAGYLDDTPLLDLNYME 173 Query: 180 DSAAETDMNVV-MTEDGRIIEVQGTAEGEPFTHEELLILLALARGESN 226 + +++V M + R++ + + + + LA Sbjct: 174 EGGGGPEVHVAYMPQMDRVVAIVTENKA---SVDVFERAHELALDGCR 218 >UniRef50_O74918 Exosome complex component rrp45 n=2 Tax=Schizosaccharomyces RepID=RRP45_SCHPO Length = 291 Score = 138 bits (347), Expect = 2e-31, Method: Composition-based stats. Identities = 41/253 (16%), Positives = 81/253 (32%), Gaps = 34/253 (13%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +R GR + R + + G V V FG T+V+ + E P + G + Sbjct: 23 LRLDGRQLSDFRSLEIQFG---KEYGQVDVSFGHTRVMARITTEITKP-YTDRPFDGIFS 78 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALR--AAVDLKALG------EFTI 112 + P + A G+ + + I RLI +A+R A+D ++L + + Sbjct: 79 ITTELTPLAYSAFEA-----GRVSDQEIVISRLIEKAVRRSNALDTESLCIISGQKCWHV 133 Query: 113 TLDCDVLQADGGTRTASITGACVALVDALQKL------------VENGKLKTNPMKGMVA 160 + DG A+ AL + VE + M Sbjct: 134 RASVHFINHDGNLVDAACIAVIAALCHFRRPELTVVGEEVTVHPVEERVPVPLSILHMPI 193 Query: 161 AVSVGIVNGE--AVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEEL---L 215 V+ N A+ D E+ M + + ++ + ++ + + Sbjct: 194 CVTFSFFNNGELAIVDATLEEEDLCNGSMTITLNKNREVCQIYKAGGIIIDPSKIISCAK 253 Query: 216 ILLALARGESNPL 228 +A + + Sbjct: 254 TAFDIAVSVCSVI 266 >UniRef50_D2UXP2 Exosome complex exonuclease RRP43 n=1 Tax=Naegleria gruberi RepID=D2UXP2_NAEGR Length = 279 Score = 138 bits (347), Expect = 2e-31, Method: Composition-based stats. Identities = 40/246 (16%), Positives = 75/246 (30%), Gaps = 22/246 (8%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +RP GR N +R ++ + EGS LV+ G+T V+C E +P G + Sbjct: 27 VRPDGRPLNMIRETVVSSGSLGNCEGSSLVKTGNTSVVCGIKAEVMIPTE-DAPKNGKVV 85 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIA-------RALRAAVDLKALGEFTIT 113 + + +++ QRL L + + + Sbjct: 86 ISFDFPSICAADVTGNWEEINE--KKSVIQQRLAGIFYNCNVMDLSQLCIEEGKAVWVLY 143 Query: 114 LDCDVLQADGGTRTA-----------SITGACVALVDALQKLVENGKLKTNPMKGMVAAV 162 D L+ DG A C D + + + Sbjct: 144 ADLYCLENDGNVFDAALIALLTALKNVSLPTCQITKDDEAIVTNENSNIKLQLDHYPIPL 203 Query: 163 SVGIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALAR 222 S G ++ + D E+S + +V E + + G+ L L +A+ Sbjct: 204 SFGNLSEFTIVDPTSEEESLLAWKLTIVYNERNELCSLFKPG-GKSIKQSTLNYCLEMAK 262 Query: 223 GESNPL 228 + + Sbjct: 263 KRTGKI 268 >UniRef50_Q54Q83 Putative uncharacterized protein n=1 Tax=Dictyostelium discoideum RepID=Q54Q83_DICDI Length = 237 Score = 138 bits (347), Expect = 2e-31, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 77/228 (33%), Gaps = 26/228 (11%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR N +RPV + A+GS +KVL V K + Sbjct: 7 RNDGRCENSIRPVESEQGSLNKADGSAKFSQDKSKVLAAVYGPIEVNSARKEKILKSY-V 65 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQA 121 E P A G E + LI A+ + + I++ V Sbjct: 66 EVTFTP-----------AFGNTNYIDKEKELLIKNAVESMILTTLYPRTQISVILQVFSD 114 Query: 122 DGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGI-VNGEAVCDLEYVED 180 DG + +I AC+AL+DA M G++ +V++ +G D E+ Sbjct: 115 DGSIVSCAINAACLALLDA-----------GIEMNGLLGSVTLCFNNDGSIYVDPSTEEE 163 Query: 181 SAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 + ++ + + I + T T ++ L A + + Sbjct: 164 NQSKAIAIYSFSSINKNIVLSKTI--GTLTEDQYFKGLDKASESCDLI 209 >UniRef50_C1GBF4 Exosome complex exonuclease RRP45 n=14 Tax=Eurotiomycetidae RepID=C1GBF4_PARBD Length = 300 Score = 137 bits (344), Expect = 4e-31, Method: Composition-based stats. Identities = 43/250 (17%), Positives = 94/250 (37%), Gaps = 32/250 (12%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +R GR+ +Q+RP+ ++ + G V ++ G T V+ S E P + + G T Sbjct: 23 IRLDGRALDQLRPLMVSFG---NECGHVKLQLGKTSVVVRISAEVTKPH-PERENDGIFT 78 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALR--AAVDLKALG------EFTI 112 + ++ G Q ++ R++ R +R A+D ++L + I Sbjct: 79 VVVELNDMASPAFK-----TGWQSEMETQLARILDRIIRRSNALDTESLCIAAGKNCWHI 133 Query: 113 TLDCDVLQADGGTRTASITGACVALVDALQKLV------------ENGKLKTNPMKGMVA 160 D V+ +DGG + AL+ E + + Sbjct: 134 RADVHVIDSDGGLVDSCCLAIMTALLHFRLPEAIVREGRVTVFSPEERVPSPLNLTKLPL 193 Query: 161 AVSVGIVNG--EAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILL 218 + + I + V D E++ +E ++ + + + G + + ++G P ++ Sbjct: 194 STTFNIYDEGRIIVLDAVSKEEAVSEGNLIIALNKTGEL-ALYIKSDGTPADPLSMISCS 252 Query: 219 ALARGESNPL 228 +A + N + Sbjct: 253 NVALAKVNEM 262 >UniRef50_Q20128 Exosome (Multiexonuclease complex) component protein 9, isoform a, confirmed by transcript evidence n=3 Tax=Caenorhabditis RepID=Q20128_CAEEL Length = 434 Score = 137 bits (344), Expect = 4e-31, Method: Composition-based stats. Identities = 45/249 (18%), Positives = 88/249 (35%), Gaps = 32/249 (12%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R RS + R V L G+ + G+TKV+ S E P + +G I Sbjct: 23 RFDFRSLEEFRDVKLVVGA---EVGTAICTIGNTKVMAAVSAEIAEPSSM-RPHKGVINI 78 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALR--AAVDLKALGE------FTIT 113 + + P + + G + ME+ RL+ +R +D++AL + I Sbjct: 79 DVDLSPMA-----NYANEHDRLGSKGMELIRLLELIIRDSRCIDVEALCIRAGKEIWKIR 133 Query: 114 LDCDVLQADGGTRTASITGACVALVDALQKLV----------ENGKLKTNPMK--GMVAA 161 +D +L DG + A AL + V + P+ M Sbjct: 134 VDVRILDEDGSLLDCACLAAITALQHFRRPNVTLEPHHTLIYSEYEKAPVPLNIYHMPIC 193 Query: 162 VSVGIVNG--EAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLA 219 ++G+++ V D E + + + V + + + + + +++ + Sbjct: 194 TTIGLLDKGQIVVIDPTDKETACLDGSIVVACNKRREVCALHQS-TNLILSTKQIERCVK 252 Query: 220 LARGESNPL 228 LA + L Sbjct: 253 LAMARAEAL 261 >UniRef50_B7PUF0 Exosomal 3'-5' exoribonuclease complex, subunit Rrp43, putative n=1 Tax=Ixodes scapularis RepID=B7PUF0_IXOSC Length = 425 Score = 137 bits (344), Expect = 4e-31, Method: Composition-based stats. Identities = 42/249 (16%), Positives = 85/249 (34%), Gaps = 33/249 (13%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR++ R + L+ + G + G+TKVL S E VP+ +G + Sbjct: 24 RVDGRTSKDSRALRLSLGLDR---GCCVASLGETKVLAQVSSEVIVPK-PNRPNEGELFV 79 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARA--------LRAAVDLKALGEFTIT 113 + P + A G+ G +EI RL+ R L + + +++ Sbjct: 80 NLELSPMAAPHFEA-----GRLGDFGVEIARLLERCVRDSHCVDLESLCIVAREKVWSLR 134 Query: 114 LDCDVLQADGGTRTASITGACVALVDALQKL----------VENGKLKTNP--MKGMVAA 161 +D VL G + AL+ + + + + P + Sbjct: 135 VDVQVLNHRGNIAECASVATVAALLHFRRPDVTVVGTEVTVHDPREREPVPLHLHHYPYL 194 Query: 162 VSVGIVNG--EAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLA 219 +S + + D +E+ A+ + + + I + E++L+ Sbjct: 195 MSFAFYDEGKTVLVDPSELEERIADGLLTLGVNAHYEICTLHQRGCI--IGKEQVLLCSR 252 Query: 220 LARGESNPL 228 LA + + Sbjct: 253 LACVRAKAI 261 >UniRef50_UPI000186CA51 Exosome complex exonuclease RRP45, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186CA51 Length = 349 Score = 136 bits (343), Expect = 4e-31, Method: Composition-based stats. Identities = 40/249 (16%), Positives = 79/249 (31%), Gaps = 32/249 (12%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR R + + G V G++KV+ E P+ + +G Sbjct: 23 RLDGRKLEGFRDLKIHFG---KDWGLCYVSLGESKVVSQVKCEIQEPQAV-RPNEGLFFM 78 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARAL--RAAVDLKALG------EFTIT 113 + ++ G+ + IQRL+ + L A+DL++L + I Sbjct: 79 NVELSLMASPYIEP-----GRASNLSTHIQRLLDKCLYDSKAIDLESLCIVAEDKVWAIK 133 Query: 114 LDCDVLQADGGTRTASITGACVALVDALQKLVENG----------KLKTNP--MKGMVAA 161 +D VL DG + A AL + V + P + Sbjct: 134 IDVHVLNHDGSLVDCASISALAALAHFKRPDVTTDGEEIKVHSTAERDPIPLTLHHYPIC 193 Query: 162 VSVGIVNGE--AVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLA 219 VS ++N D +E+ ++ ++ + I + + ++ Sbjct: 194 VSFALLNNSENIFADPTEIEERVSDANLTFGINAYKEICCLHLGGTAL-IKPKLIMTCSL 252 Query: 220 LARGESNPL 228 A + + Sbjct: 253 KAAARAKEV 261 >UniRef50_Q06265 Exosome complex exonuclease RRP45 n=46 Tax=Metazoa RepID=EXOS9_HUMAN Length = 439 Score = 136 bits (343), Expect = 5e-31, Method: Composition-based stats. Identities = 48/249 (19%), Positives = 86/249 (34%), Gaps = 32/249 (12%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR R + ++ G +VE G T+VL S E P+ L +G + Sbjct: 23 RLDGRQTYDYRNIRISFGTD---YGCCIVELGKTRVLGQVSCELVSPK-LNRATEGILFF 78 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRA--AVDLKALGE------FTIT 113 + + G+Q +++ RL+ R LR +D ++L + I Sbjct: 79 NLELSQMAAPAFEP-----GRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEKVWQIR 133 Query: 114 LDCDVLQADGGTRTASITGACVALVDALQKLV------------ENGKLKTNPMKGMVAA 161 +D +L DG A+ A VAL + V E + M Sbjct: 134 VDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPIC 193 Query: 162 VSVGIV--NGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLA 219 VS + D E+ + + + M + I +Q + G +++L Sbjct: 194 VSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSG-GIMLLKDQVLRCSK 252 Query: 220 LARGESNPL 228 +A + + Sbjct: 253 IAGVKVAEI 261 >UniRef50_B3S9X0 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens RepID=B3S9X0_TRIAD Length = 240 Score = 136 bits (343), Expect = 5e-31, Method: Composition-based stats. Identities = 38/237 (16%), Positives = 74/237 (31%), Gaps = 31/237 (13%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 MR + + A GS +E +TK++C V + + Q + Sbjct: 1 MRKDYQLPKFYDRLVCRTGAVSQAVGSAYIELRNTKIICAVYGPREVAKKQEFNIQATVA 60 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 E S R + Q + E ++I +AL+ V L + I + VLQ Sbjct: 61 CELKFATFSC-----RRRRRHIQDSQEKEYSQIIVQALQPVVRLDKYPKSQIDIFITVLQ 115 Query: 121 ADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVED 180 DG +IT A VAL D + + + + ++ D Y+E+ Sbjct: 116 NDGSVLGGAITAASVALAD-----------SGIEIFDVAIGCCLRQIGDLSLIDPTYLEE 164 Query: 181 S-----------AAETDMNVV-MTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 ++ + + ++ + E + ++ Sbjct: 165 EGRLNNEEEDEIVTNANVTIALLPSLNQVSALIMNGE---LDVDSTQRIIKDCLEGC 218 >UniRef50_A9USE9 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9USE9_MONBE Length = 330 Score = 136 bits (342), Expect = 6e-31, Method: Composition-based stats. Identities = 44/245 (17%), Positives = 85/245 (34%), Gaps = 31/245 (12%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR ++ R T G V + G T+V+ + E P +G+ Sbjct: 28 RLDGRHRHEHRECKFTF---HQTPGFVELALGKTRVMAQLTCEVVAPH-PDYDSEGFFRF 83 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARAL--------RAAVDLKALGEFTIT 113 + AA+ +E+ RL+ RA + +K + + Sbjct: 84 NVSI----AAGAGIAYAAQRSSSEEIVELTRLLERAFKEARAIDSESLCIVKGEKVWEVR 139 Query: 114 LDCDVLQADGGTRTASITGACVALVDALQKLV------------ENGKLKTNPMKGMVAA 161 +D VL+ G A ++ + V E + + + A Sbjct: 140 VDVTVLENGGNMADGVCLAALAGILTFRRPYVSLTGGQVKIHSLEEHEPVSLSVHHRPIA 199 Query: 162 VSVGIV--NGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLA 219 V++ + + D +E++ AE + V + G I + + G P + E++ LL Sbjct: 200 VTIASIAGGRHLLVDPTSLEEAVAEGCITVCLNGHGEICSIN-SGGGTPLSPEQMKELLQ 258 Query: 220 LARGE 224 LA+ + Sbjct: 259 LAKRK 263 >UniRef50_B6ACS1 3' exoribonuclease protein, putative n=1 Tax=Cryptosporidium muris RN66 RepID=B6ACS1_9CRYT Length = 295 Score = 136 bits (342), Expect = 6e-31, Method: Composition-based stats. Identities = 42/237 (17%), Positives = 91/237 (38%), Gaps = 13/237 (5%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +R R N+VRP+ + +GS G T+VLCT + + L G +T Sbjct: 45 IRNDSRIPNEVRPINIKTGTVATCDGSAYFSIGRTRVLCTINGPKLTKSSLNEIGL-SVT 103 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGG----RTMEIQRLIARALRAAVDLKALGEFTITLDC 116 +Y + P R K + + +++ + + +I Sbjct: 104 VDYRLSPFCKKMRQYGNINKSNLNTDYKAEEKYQSLTLEKVIQSIICREKYTRMSIDCYI 163 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSV-GIVNGEAVCDL 175 +++ DG +A+I+ +AL DA +++ G + + + V + D Sbjct: 164 YIIEDDGCALSAAISCLSLALCDAKIEII--GLFSSVTVIAIPNNSEVKSDCKYICILDP 221 Query: 176 EYVE---DSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILL-ALARGESNPL 228 Y E +++ +++++ + + V +A+G F + L+ +LA + Sbjct: 222 TYDEINLENSNISELSIGLCTLRNQV-VHLSAKGSAFGDIQTSKLMFSLAEAACTAI 277 >UniRef50_Q9SSE1 MLP3.20 protein n=17 Tax=Embryophyta RepID=Q9SSE1_ARATH Length = 297 Score = 135 bits (341), Expect = 9e-31, Method: Composition-based stats. Identities = 42/268 (15%), Positives = 84/268 (31%), Gaps = 47/268 (17%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +R GR RP+ + A GS V G T V+ + E G P L+ +G + Sbjct: 19 LRTDGRKRLTYRPIYVETGVIPQANGSARVRIGGTDVIASVKAEIGRPSSLQ-PDKGKVA 77 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARA----------------------- 97 P + T R + E+ + R Sbjct: 78 VFIDCSPTAEPTFGGRGGE-----ELSSELALALQRCLLGGKSGAGLQSSIHVLVPGAGI 132 Query: 98 -LRAAVDLKALGEFTITLDCDVLQADGGTRTASITGACVALVDALQKLVE------NGKL 150 L + + + + + +D V+ +DG A AL + V + + Sbjct: 133 NLSSLLIKEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALTNTAIPKVNVSAEVADDEQ 192 Query: 151 KTNPMKG----------MVAAVSVGIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEV 200 + + V++ V + D E+S + +++ + G I + Sbjct: 193 PEIDISDEEYLQFDTSSVPVIVTLTKVGTHYIVDATAEEESQMSSAVSISVNRTGHICGL 252 Query: 201 QGTAEGEPFTHEELLILLALARGESNPL 228 G +L ++++A+ + L Sbjct: 253 TKR-SGSGLDPSVILDMISVAKHVTETL 279 >UniRef50_UPI0001793368 PREDICTED: similar to Exosome complex exonuclease MTR3 (mRNA transport regulator 3 homolog) (Exosome component 6) n=1 Tax=Acyrthosiphon pisum RepID=UPI0001793368 Length = 279 Score = 135 bits (341), Expect = 9e-31, Method: Composition-based stats. Identities = 40/223 (17%), Positives = 77/223 (34%), Gaps = 23/223 (10%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +R GR + R + + A+GS +E G TK++C+ + VP ++ G + Sbjct: 40 VRCDGRDISAHRNLCIKTGIVTQAKGSAYLECGSTKLICSVFDPKEVPNKVEYAKTGELQ 99 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 E+ S R ++ + RAL A+ F I ++ VL+ Sbjct: 100 CEFKFATFSCRQRRTYTR-----DSEERQLCNELRRALEPAICRGEFANFEIHINVLVLE 154 Query: 121 ADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVED 180 DG A+ PM ++ A S+GI + + D Y E+ Sbjct: 155 NDGSVL-----------AAAITAAGLALMDGCIPMYDVIVATSLGIYKNKILVDPTYDEE 203 Query: 181 SAAETDM-------NVVMTEDGRIIEVQGTAEGEPFTHEELLI 216 + + + V++ + ++ A+ Sbjct: 204 TLCSSTIDNGENRGTVMLAYMKNLQQITEFAQNGSMDVNMFPE 246 >UniRef50_B6AFR7 3' exoribonuclease family protein, putative n=1 Tax=Cryptosporidium muris RN66 RepID=B6AFR7_9CRYT Length = 414 Score = 135 bits (340), Expect = 1e-30, Method: Composition-based stats. Identities = 45/266 (16%), Positives = 95/266 (35%), Gaps = 45/266 (16%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +R GR++N+ R + +T N K +G V V+ G T VLC E +P + +G +T Sbjct: 13 LRIDGRTSNEFRRIQITLN--KTFDG-VEVKIGKTHVLCIIKAELMIPN-IDRPSEGQVT 68 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARAL--------RAAVDLKALGEFTI 112 P S + + + ++ ++E+ I R L + L ++I Sbjct: 69 FSVDYGPLSLNP--NGQVYRHERNALSIELANYIERTLKETGAFDTEVLCIISGLCAWSI 126 Query: 113 TLDCDVLQADGGTRTASITGACVALVDAL--------------------------QKLVE 146 D L DG I A ++ ++ Sbjct: 127 RCDIRALCDDGNLFDTCILATLSAFRHFRYKDIDCSSFLNKLKLNKYKNKDYLRIEQAIK 186 Query: 147 NGKLKTNPMKGMVAAVSVGIVNG----EAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQG 202 N + + ++S+G + + D E+S + +++ + ++ + Sbjct: 187 NMDMIPLNIYHFPLSISIGYTRVNNELQYIVDPCSEEESILQAVLHIAINGGQQVCGLSK 246 Query: 203 TAEGEPFTHEELLILLALARGESNPL 228 GE T +++ + LA+ + + Sbjct: 247 PG-GEKLTIDQINFAIQLAKNHGSNI 271 >UniRef50_Q55BB0 Putative uncharacterized protein n=1 Tax=Dictyostelium discoideum RepID=Q55BB0_DICDI Length = 217 Score = 134 bits (338), Expect = 2e-30, Method: Composition-based stats. Identities = 44/216 (20%), Positives = 79/216 (36%), Gaps = 22/216 (10%) Query: 16 LTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTHTRNA 75 + GS VE +TKVLCT + + + E S+ T Sbjct: 1 MKIGVVSQGSGSSYVEMENTKVLCTIHGPRATQKTELFET-AKLNCELKYTTFSSTTEKI 59 Query: 76 REAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTASITGACV 135 + ++ LI++++ ++ L+ + I + VL DG ASIT A + Sbjct: 60 DYVE----NSKEKDLSLLISQSIIGSIRLEKYPKTAIDIYILVLNDDGNVLVASITAATM 115 Query: 136 ALVDALQKLVENGKLKTNPMKGMVAAVSVGIV-NGEAVCDLEYVEDSAAETDMNVV--MT 192 AL DA M MV++ SV + + D +E++ + +V M Sbjct: 116 ALADA-----------GVEMFDMVSSCSVSCTKDNRTLIDPTTLEETIPSSSTVLVAKMP 164 Query: 193 EDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 I ++ T E + +L + L + + Sbjct: 165 SLNEITQIIQTGE---LQYTNVLECVDLCIDGCDKI 197 >UniRef50_C1E415 Predicted protein (Fragment) n=2 Tax=Micromonas RepID=C1E415_9CHLO Length = 291 Score = 134 bits (338), Expect = 2e-30, Method: Composition-based stats. Identities = 52/253 (20%), Positives = 94/253 (37%), Gaps = 35/253 (13%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +R GR RPV+ +G V+ GDT+VL S + P +G +G IT Sbjct: 25 LRVDGRGPFDTRPVSYRFGP---KDGMCEVQLGDTRVLAVVSAKLEPPSGARG-NEGTIT 80 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRA--AVDLKALGE------FTI 112 P ++ G+ G + E+ ++ RA+R AVD+++L + + Sbjct: 81 INVEFSPMASPNFEP-----GRPGEQAQELALVLERAIRETGAVDVESLCVLAGRRVWHV 135 Query: 113 TLDCDVLQADGGTRTASITGACVALVDALQKL--------------VENGKLKTNPMKGM 158 D VL A G A+ A AL+ + + + + + Sbjct: 136 RCDVHVLDACGNIAGAASLAADAALLSFRRPEATVSPDTQLITVHPADVREPVPLALHHL 195 Query: 159 VAAVSVGIV---NGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELL 215 A++ G +G + D E+ +++ VV+ + V+ E E+ Sbjct: 196 PVAITFGYFAEQDGLVIADPTVNEEMVIGSELVVVLNAHDELCAVRYGGEVA-VKPSEIS 254 Query: 216 ILLALARGESNPL 228 + +A S L Sbjct: 255 RCVRIASRISKDL 267 >UniRef50_UPI0000522EB2 PREDICTED: similar to Exosome complex exonuclease RRP43 (Ribosomal RNA-processing protein 43) (Exosome component 8) (p9) (Opa-interacting protein 2) n=1 Tax=Ciona intestinalis RepID=UPI0000522EB2 Length = 279 Score = 134 bits (337), Expect = 2e-30, Method: Composition-based stats. Identities = 43/245 (17%), Positives = 79/245 (32%), Gaps = 21/245 (8%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +RP R+ Q+R TL A+GS LV+ G+T V+C E P + +G I Sbjct: 22 IRPDTRTLQQIRKTTLNVGPITTADGSALVKIGNTMVMCGVKAELTQPTAEE-PKKGIIV 80 Query: 61 AEYGMLPRSTHTRNAREAAKGKQ-----GGRTMEIQRLIARALRAAVDLKALGEFTITLD 115 + + Q ++I L+ + + + D Sbjct: 81 PNLDLPALCSSKFKPGPPNTQAQVGTKFLDNLIKIANLVNS--EDLCIVPDKLVWVLYCD 138 Query: 116 CDVLQADGGTRTA----------SITGACVAL-VDALQKLVENGKLKTNPMKGMVAAVSV 164 L DG A S++ V L + + + + + A S Sbjct: 139 VTCLNYDGCVIDAAVVALVAALRSVSLPSVTLNEETDTPVTNINEKTPLTINCLPVASSF 198 Query: 165 GIV-NGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARG 223 + + D E+ + VV E ++ V G T ++L I + + Sbjct: 199 SFFESEHIITDPTLSEEDITSGCLTVVSDEHENLLLVDRPG-GVSITEDQLEICIQRSFK 257 Query: 224 ESNPL 228 + + Sbjct: 258 RTKEV 262 >UniRef50_A7SMZ0 Predicted protein n=2 Tax=Metazoa RepID=A7SMZ0_NEMVE Length = 266 Score = 134 bits (337), Expect = 3e-30, Method: Composition-based stats. Identities = 38/237 (16%), Positives = 69/237 (29%), Gaps = 20/237 (8%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GRS R + + GS + DT +L E G P L G G + Sbjct: 23 RSDGRSCEDYRYFEVETGIVSNTSGSARLRLSDTDILVGVKAEIGEPNLLT-PGCGRVEF 81 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARA---LRAAVDLKALGEFTITLDCDV 118 ++ N R + ++ L + + + + +D V Sbjct: 82 FVDCSSNASVEFNGRSGDDLAADLMRSLDRTYSNKSAIDLSSLSIIHGQQCWVLYVDTLV 141 Query: 119 LQADGGTRTASITGACVALVDALQKLVENGKLKT---------------NPMKGMVAAVS 163 L+ G A AL + V P M ++ Sbjct: 142 LECGGNLYDALSLAVKAALYNTRIPNVTVSSDGGEVELEISDDPYDCHQLPPDQMPIIIT 201 Query: 164 VGIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLAL 220 + + G V D E+ ++ + V + G + Q G + + +L + Sbjct: 202 LSKIGGRHVVDASQSEELCSDCHLLVAVNSCGNVCGQQKIGCGG-LEPDTICEMLEV 257 >UniRef50_D0N9X4 Exosome complex exonuclease RRP43, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0N9X4_PHYIN Length = 283 Score = 133 bits (336), Expect = 4e-30, Method: Composition-based stats. Identities = 44/245 (17%), Positives = 88/245 (35%), Gaps = 21/245 (8%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +RP R+ R V L + + A S LV+ G T VL + G P + QG + Sbjct: 35 VRPDTRTIEATRAVQLQTDVIQTAASSSLVKLGKTSVLTAIKLAVGTP-AVATPDQGELA 93 Query: 61 AEYGMLPRSTHTRNAREAAK-----GKQGGRTMEIQRLIARALRAAVDLKALGEFTITLD 115 + + P ++ ++ G Q R + R++ + + +K + + +D Sbjct: 94 IQVHLSPLCSNRFTVGRPSEEAQSIGSQLTRVIAGSRVVE--MESLSIVKGQSAWKLMVD 151 Query: 116 CDVLQADGGTRTASITGACVALVDALQKL------------VENGKLKTNPMKGMVAAVS 163 + DG A++T AL V +G ++ A S Sbjct: 152 VYGVDHDGNVLDAALTSIIAALKTLKLPATSVNEVDNVVSIVPDGDATPLRVEHGAYATS 211 Query: 164 VGIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARG 223 +V+ + D E+ + ++ + DG++ V G + + +A+ Sbjct: 212 FAMVDDVVLIDPTSAEEGLSSAVFSLSYSTDGQLCGVHKAG-GSIVAPSVMQQCMTIAKR 270 Query: 224 ESNPL 228 + L Sbjct: 271 NTKEL 275 >UniRef50_Q4DZV2 Ribosomal RNA processing protein 41A, putative n=8 Tax=Trypanosomatidae RepID=Q4DZV2_TRYCR Length = 252 Score = 133 bits (335), Expect = 5e-30, Method: Composition-based stats. Identities = 50/227 (22%), Positives = 84/227 (37%), Gaps = 17/227 (7%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQ-GQGWI 59 +R GR + R +TL +G V G V + V L+ + + I Sbjct: 13 LRLDGRRPQESRRMTLEFGKVLGCDGCCTVMSGLATVCASVYGPREVTNRLESKYNECII 72 Query: 60 TAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVL 119 T E + + R A + + E+ + R+ V L I + +VL Sbjct: 73 TCEVAIAAFAGEKRRAPQRR----SKLSEEMSAAVLEVARSVVLLSQYPNSQIHICVEVL 128 Query: 120 QADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVE 179 + DG + A I AC+ALVDA M+ +V A +VG+++ V DL E Sbjct: 129 RQDGSDKAACINAACLALVDAC-----------VAMRDIVYAQTVGLIHAVDVVDLTTEE 177 Query: 180 DSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESN 226 + + + + V T E + L+ +A+ S Sbjct: 178 MRSQCPTICIAVKGHDPSSIVWME-SNCRVTSEVVSRLVTVAQKSSE 223 >UniRef50_C5KIM5 Exosome complex exonuclease RRP41, putative n=2 Tax=Perkinsus marinus ATCC 50983 RepID=C5KIM5_9ALVE Length = 248 Score = 133 bits (334), Expect = 6e-30, Method: Composition-based stats. Identities = 46/235 (19%), Positives = 80/235 (34%), Gaps = 27/235 (11%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRF--------LK 52 R GR N++R +TL A+GS ++ G TKV+ + + Sbjct: 13 FRLDGRRPNELRHLTLKIGDAPSADGSATLQQGLTKVVAHVFGPRPLQAASVGRAAGTMA 72 Query: 53 GQGQGWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTI 112 QG+ + Y +T R R R Q + R ++ AV + + I Sbjct: 73 RQGEAIVNVVYRTSSFATIDRKRRTTGDRNSTER----QLWLQRIIQDAVLTEMFPKSCI 128 Query: 113 TLDCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNG-EA 171 + +LQ DG + P+K M +A +VG+VN + Sbjct: 129 DVHLTILQEDGSALA-----------ACVNAAAAALVDAGIPIKDMFSACTVGLVNNQKP 177 Query: 172 VCDLEYVE-DSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 + DL + E + + V + + + E+ E LA + Sbjct: 178 IVDLNHAESEGCGGAVVTVAVYQRRK--ELNYLCLEGKINIESFESAADLAIEGA 230 >UniRef50_A7RZV7 Predicted protein n=2 Tax=Eumetazoa RepID=A7RZV7_NEMVE Length = 232 Score = 132 bits (333), Expect = 7e-30, Method: Composition-based stats. Identities = 35/216 (16%), Positives = 74/216 (34%), Gaps = 27/216 (12%) Query: 10 QVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRS 69 ++R + A+GS GDT+V+ A V + + + + Sbjct: 14 ELRAMFCEHGLLDKADGSSKFAQGDTQVMAAAYGPVEVKLNKELIDRATLEVIF------ 67 Query: 70 THTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTAS 129 G G ++ +I + V ++T+ V+Q G + + Sbjct: 68 -------RPKIGIPGCSEKLVEGIIRNSCEPIVLTALHPRASLTIVVQVVQNSGSLLSCA 120 Query: 130 ITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVN-GEAVCDLEYVEDSAAETDMN 188 + AC+A++DA PM+ M+ ++ I E V D ++ A + Sbjct: 121 VNAACLAMMDA-----------GFPMRCMMCGITCAITEQDELVLDPTLEQERKATAVLT 169 Query: 189 VVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGE 224 V + + ++ F ++ LA ++ Sbjct: 170 FVFDSVNQ--NLLTSSTKGSFDVDQYNKCLAASKAA 203 >UniRef50_C4LZA9 Exosome complex exonuclease, putative n=2 Tax=Entamoeba RepID=C4LZA9_ENTHI Length = 265 Score = 132 bits (331), Expect = 1e-29, Method: Composition-based stats. Identities = 44/249 (17%), Positives = 87/249 (34%), Gaps = 33/249 (13%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +R R ++ R V+ + GSV G++K L +E P QG Sbjct: 12 IRIDARRLDEFREVS----FVCREPGSVETHIGNSKALGECVVEPVCP-GRSRPDQGIFN 66 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRA--------AVDLKALGEFTI 112 L + +EI +++ R L + V ++ + I Sbjct: 67 IRVNFLEMANPNFYDSRGP-----RDLIEIGKVVERGLLSTRAIDVDGLVIIRGKLVWKI 121 Query: 113 TLDCDVLQADGGTRTASITGACVALVDALQKLV------------ENGKLKTNPMKGMVA 160 T+ ++ G A AL+ A+++ V E K + + Sbjct: 122 TVCVHIINDCGNLMDLVSITAISALLTAVRREVQICGTDVKILTPEERKPVPLAIHHIPI 181 Query: 161 AVSVGIV-NGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLA 219 VS GI +G + D E+S ++ + + + ++G + VQ + P + + + Sbjct: 182 TVSFGITESGVPLLDPSEREESVCKSHLTIAINKEGEVCAVQKSG--TPISMKVIQKCCD 239 Query: 220 LARGESNPL 228 A ++ L Sbjct: 240 TALSKAKML 248 >UniRef50_B6KQ03 3' exoribonuclease, putative n=3 Tax=Toxoplasma gondii RepID=B6KQ03_TOXGO Length = 303 Score = 132 bits (331), Expect = 1e-29, Method: Composition-based stats. Identities = 50/239 (20%), Positives = 80/239 (33%), Gaps = 36/239 (15%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR ++R + + + A GS V G TK+ C + Q +G I Sbjct: 47 RHDGRRFEEMRAMCMQTHSLAAAAGSAFVSVGKTKLNCAVYGPRPNMKHAS-QDRGSINL 105 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQA 121 E+ P +T T + L+ +AL A V L + TI + VL+ Sbjct: 106 EFRFAPFAT------TGKDACSERDTAHLTTLLHQALNAVVRLDLYAKSTIAVSVLVLED 159 Query: 122 DGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV---------NGEAV 172 DGG +A++T +AL DA M +V S + + Sbjct: 160 DGGLISAALTCIGLALADA-----------GIEMLDVVTGASACVFSVGHPDSPPRTCVL 208 Query: 173 CDLEYVEDSAAETDMNVVMTEDG------RIIEVQGTAEGEPFTHEELLILLALARGES 225 D + E+ A D N + G + + + E +L L Sbjct: 209 LDPD-AEERRAFADKNCTFVDLGYCPALASVCFIHASGTL--LATESGEQMLRLCEAAC 264 >UniRef50_B3S0I5 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens RepID=B3S0I5_TRIAD Length = 741 Score = 131 bits (330), Expect = 1e-29, Method: Composition-based stats. Identities = 46/238 (19%), Positives = 82/238 (34%), Gaps = 56/238 (23%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +R GR N +RP+ N GS L + G+++ Sbjct: 338 IRCDGRGLNDLRPIDAEINIFPALHGSSLFKRGESQ------------------------ 373 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 P + + + R + L ALR+ V FT+ L VL Sbjct: 374 ----FPPYANNEI----GRVMENSRREIGHGTLAKNALRSVV--SDDFPFTVRLTGQVLM 423 Query: 121 ADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGI----------VNGE 170 ++G T AS G +AL+DA P+ +A V++G+ N + Sbjct: 424 SNGSTSMASACGGSLALMDA-----------GVPISRHIAGVAMGLVANPSDDGSKFNYK 472 Query: 171 AVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 + D+ +ED E D + + +G I +Q + + E + + + + Sbjct: 473 ILTDIAGIEDYFGEMDFKIAGSREG-ITSLQADFKVTGVSMELIEEAIKKSAVARGKV 529 Score = 61.6 bits (148), Expect = 2e-08, Method: Composition-based stats. Identities = 40/216 (18%), Positives = 71/216 (32%), Gaps = 35/216 (16%) Query: 13 PVTLTRNYTKH-AEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTH 71 + + A+GSVLVE G T VL TA + + + +Y +T Sbjct: 53 EIKFSCGKLATIADGSVLVETGSTAVLVTAVMSRATTSYAGF---APLRVDYREKASATG 109 Query: 72 TRNAREAAKG-KQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTASI 130 + R + R I R++R++ + + C ++ AD Sbjct: 110 KIPVNFFKRELGPSEREILASRSIDRSIRSSFQRGM--PQEVQIVCSLMSAD-------- 159 Query: 131 TGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNVV 190 A D + + G AV VG +N E + + VE ++ D+ +V Sbjct: 160 -----AERDTIVPAINGG------------AVRVGYINDEVIINPTRVELYQSKLDLVIV 202 Query: 191 MTEDGRIIEVQGTAEGEPFTHEELLILLALARGESN 226 + G V +L + E+ Sbjct: 203 ASAKG---LVMLEGTASELPDAGVLKAITYGLEEAQ 235 >UniRef50_C4WW91 ACYPI010191 protein n=1 Tax=Acyrthosiphon pisum RepID=C4WW91_ACYPI Length = 400 Score = 130 bits (328), Expect = 2e-29, Method: Composition-based stats. Identities = 38/242 (15%), Positives = 68/242 (28%), Gaps = 24/242 (9%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +R GR ++ RP+ + G+ LV G T+V S E P +G + Sbjct: 22 IRLDGRKKDEYRPLKIAYGLD---WGNCLVTLGCTRVFAQVSCEIYQPNN-SRPNEGVLQ 77 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 + + + + R + + I L A + + I +D VL Sbjct: 78 ISAEL---AGDNKINDLTKINQVLERFYKDSKCID--LEALCIIAEEKVWKIKVDLSVLN 132 Query: 121 ADGGTRTASITGACVALVDALQKLV------------ENGKLKTNPMKGMVAAVSVGIVN 168 DG T AL+ V + S I Sbjct: 133 MDGNTLGCCSIATLAALMHFRYPDVVSTGEKVVVYSSSERDPIPLSLHHHPVIASFAIFE 192 Query: 169 --GEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESN 226 + D +ED + +++ + V + L+ A + Sbjct: 193 KYDFIILDPSLLEDKVCDNKLSICFNNHSEMCGVDIEG-CASLSQNLLMNCSNQAASVAI 251 Query: 227 PL 228 L Sbjct: 252 KL 253 >UniRef50_B6H218 Pc13g03690 protein n=10 Tax=Trichocomaceae RepID=B6H218_PENCW Length = 297 Score = 130 bits (328), Expect = 3e-29, Method: Composition-based stats. Identities = 38/247 (15%), Positives = 74/247 (29%), Gaps = 26/247 (10%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +R GR + RP+ ++ G V ++ G T ++ S E P G Sbjct: 23 VRLDGRQPDDYRPLNISFG---EEYGHVNLQLGKTNIIVRISAEVTKP-REDRPFDGLFN 78 Query: 61 AEYGMLPRSTHTRNAREAAKG-----KQGGRTMEIQRLIARALRAAVDLKALGEFTITLD 115 + + + R + + + LK + ++I D Sbjct: 79 INLELTAMGSPAWESGRTNDIEAYATNTLDRIIRHSNALDT--ESLCILKGVSCWSIRAD 136 Query: 116 CDVLQADGGTRTASITGACVALVDALQKL------------VENGKLKTNPMKGMVAAVS 163 V+ DG A+ L + VE + +V+ Sbjct: 137 VHVIDYDGNITDAACIAIMAGLQHFRRPDAVVRDGRVIVYGVEQRVPVALNITHKPLSVT 196 Query: 164 VGIVNG--EAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALA 221 N + D E+ AAE D+ + + G + + A G P ++ +A Sbjct: 197 FHTFNDSKHVIVDATLKEEQAAEGDLVIGINSAGDVCYLSKYA-GAPADAMVIVKKTNVA 255 Query: 222 RGESNPL 228 + + Sbjct: 256 WEKVKEI 262 >UniRef50_A4RUD5 Predicted protein n=2 Tax=Ostreococcus RepID=A4RUD5_OSTLU Length = 285 Score = 130 bits (328), Expect = 3e-29, Method: Composition-based stats. Identities = 45/245 (18%), Positives = 83/245 (33%), Gaps = 25/245 (10%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR + R T A GS L + G T + P +G++ Sbjct: 24 RGDGRPLGRARARTCATGVASGALGSALAKHGATTACAGVTATIATPDA-TRPEEGFLEI 82 Query: 62 EYGMLPRST-----HTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116 P+++ R A + ++ + L+ + + + +D Sbjct: 83 AVDHAPQASEDARDGRTRGRREAAAAACASAVANAAVLGKDLKQLCVERGTFAWRVRVDV 142 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVE------NGKLKTNPMKG------------- 157 VL DGG ++T AL D + V + M G Sbjct: 143 IVLCDDGGAADCAVTAVMAALRDCVLPEVAVTRGKVALEGDGTAMNGDGVRKGTRLDVQT 202 Query: 158 MVAAVSVGIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLIL 217 M ++ + + D E++ +E +++VV+TEDG + V T + L+ Sbjct: 203 MPVCLTTALYREHLLVDPTREEEALSECEVSVVLTEDGLLRGVFKPGGEVEATEDTLMKC 262 Query: 218 LALAR 222 +A A+ Sbjct: 263 IAAAK 267 >UniRef50_Q5CYG9 RRP45-like archaeo-eukaryotic exosomal rnase, PH domain (Fragment) n=2 Tax=Cryptosporidium RepID=Q5CYG9_CRYPV Length = 432 Score = 130 bits (328), Expect = 3e-29, Method: Composition-based stats. Identities = 44/266 (16%), Positives = 89/266 (33%), Gaps = 45/266 (16%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +R GR+ N+ R V + N G V V G T VL E P + +G+I+ Sbjct: 37 LRLDGRTMNEYRNVKINLN---KNYGEVEVNIGRTHVLSVVKSELVAP-SQERSSEGFIS 92 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARAL--------RAAVDLKALGEFTI 112 + P S + + + + EI I R L L + +++ Sbjct: 93 FTVDIGPLSINPTSHAF--RHNRTTLGTEIANYIERILKETGAIDTEILCILSGVCVWSV 150 Query: 113 TLDCDVLQADGGTRTASITGACVALVDALQKLVENG------------------------ 148 + VL DG A + L ++ Sbjct: 151 KCEIHVLFDDGNLFDACLMATLSGLKHYRYNEIDVDSFLKKSKCEGFGERDYQRLENTIR 210 Query: 149 --KLKTNPMKGMVAAVSVGIVNGE----AVCDLEYVEDSAAETDMNVVMTEDGRIIEVQG 202 ++ + ++S+G +NG+ + D E+S ++T +++ + + + + Sbjct: 211 KLEMIPFNVHHFPLSISIGYINGKEGLSYIVDPNSDEESISDTIIHISINDKQEVCGISK 270 Query: 203 TAEGEPFTHEELLILLALARGESNPL 228 G + ++ + +A S L Sbjct: 271 FG-GAKLSLNQINFAIQIATIHSEKL 295 >UniRef50_B2AAV3 Predicted CDS Pa_1_5280 n=11 Tax=Leotiomyceta RepID=B2AAV3_PODAN Length = 277 Score = 130 bits (328), Expect = 3e-29, Method: Composition-based stats. Identities = 47/250 (18%), Positives = 79/250 (31%), Gaps = 40/250 (16%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKG------- 53 +R GR N++R + A+GS +E G TKV+C + G Sbjct: 13 LRVDGRRWNELRRIHGQIRTQAAADGSSYLEMGHTKVMCVVTGPSEPGPRRGGAAGGASG 72 Query: 54 -------QGQGWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKA 106 + + S+ R R + T+E+Q ++ L A + Sbjct: 73 GAGSGGQSKDAEVVVNIVIAGFSSVDRKRRGRGDKR----TLEMQFTLSNTLAATLHTHL 128 Query: 107 LGEFTITLDCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGI 166 I + VL DG A I A +A VDA PM V A + G Sbjct: 129 FPHSQINISLHVLSQDGSLLAALINAATLACVDA-----------GIPMTDYVTACTAGS 177 Query: 167 VNGE--------AVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILL 218 + + DL + E+ + E +++ + L +L Sbjct: 178 TSTYAANDEGADPLLDLNHQEEQELPGLTVATLGESDKVVALV---CESRVQISRLEGML 234 Query: 219 ALARGESNPL 228 A+ + Sbjct: 235 AVGVDGCKQV 244 >UniRef50_D0NSZ6 Exosome complex exonuclease RRP42-like protein n=1 Tax=Phytophthora infestans T30-4 RepID=D0NSZ6_PHYIN Length = 295 Score = 130 bits (327), Expect = 3e-29, Method: Composition-based stats. Identities = 47/254 (18%), Positives = 85/254 (33%), Gaps = 33/254 (12%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVL--VEFGDTKVLCTASIEEGVPRFLKGQGQGW 58 +R GR R ++L + + GS +E T VL + +E P + G Sbjct: 20 VRADGRDRLSYRSLSLETSLLAQSNGSARASLEASGTDVLASVKLEVASPL-PEDPNAGI 78 Query: 59 ITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARAL--------RAAVDLKALGEF 110 + + P + R +E+ +L+ R L + + Sbjct: 79 VQVDVSCCPSVSAKLYGRAVE-----ELNVELSQLMTRLLCSCPSAELEKYCIIPGESVW 133 Query: 111 TITLDCDVLQADGGTRTASITGACVALVDALQKLVE----NGKLKTNPMKGMVAA----- 161 +I++D V ++ G AL D + V G+ KT + AA Sbjct: 134 SISIDVMVFESSGNLPDVISMAIYAALNDTIFPSVRLVGVEGEDKTIEVDTDPAAGKLMM 193 Query: 162 -------VSVGIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEEL 214 V++ + + D E+ M+V + DG + VQ + EE+ Sbjct: 194 AQQWPICVTLSKIGDYFITDPLQEEELCTTAQMSVAVNPDGNVCGVQKSG-NGSIEMEEM 252 Query: 215 LILLALARGESNPL 228 ++ A S L Sbjct: 253 QQMIDEACARSKDL 266 >UniRef50_B7QNK0 Exosomal 3'-5' exoribonuclease complex, subunit Rrp42, putative n=1 Tax=Ixodes scapularis RepID=B7QNK0_IXOSC Length = 290 Score = 130 bits (327), Expect = 3e-29, Method: Composition-based stats. Identities = 41/252 (16%), Positives = 78/252 (30%), Gaps = 31/252 (12%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +R GRS + R + L + GS V +T +L + P QG I Sbjct: 22 LRCDGRSCLEYRDIELETGVVSNCSGSAHVRLANTDILVGIKAQLETPD-PGSTDQGRIE 80 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALG--------EFTI 112 + R EI +A+A R+ L + + Sbjct: 81 FFVDCTANADPEFEGRGGEDI-----AAEISSALAQAYRSPKCLDLRSLAVVPGQQVWVL 135 Query: 113 TLDCDVLQADGGTRTASITGACVALVDALQKLVE---------NGKLKTNPM-------K 156 +D +L+ G A AL D V ++ +P + Sbjct: 136 YVDILILECGGSLVDAVSVAVKAALYDLKIPKVSVTVDENGDPEVEVSGDPFDVEKLSTE 195 Query: 157 GMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLI 216 + +++ V + + D E + A + + +T G+I + E ++ Sbjct: 196 NVPCFITLSKVGQQFILDATQEEQACAVGSLALAVTASGKIAALFKAGT-GSLHPENVMD 254 Query: 217 LLALARGESNPL 228 ++ + R L Sbjct: 255 VIEVGRDIGASL 266 >UniRef50_UPI0001925D3D PREDICTED: similar to predicted protein n=1 Tax=Hydra magnipapillata RepID=UPI0001925D3D Length = 221 Score = 130 bits (326), Expect = 5e-29, Method: Composition-based stats. Identities = 37/220 (16%), Positives = 74/220 (33%), Gaps = 29/220 (13%) Query: 11 VRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRST 70 +R + Y + +GSV + G TKV+ V + + I Sbjct: 1 MREMECNLAYLEKPDGSVTLSHGQTKVISAVYGPVEVKMNKEITDKATIIC--------- 51 Query: 71 HTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTASI 130 + G + +++++A+ A+ I + ++ G + I Sbjct: 52 ----ILKPKIGMSAVKEKVMEKIVAKTCEQAIIASLHPRSAIQVVLQIVHDSGSLLSCLI 107 Query: 131 TGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV-NGEAVCDLEYVEDSAAETDMNV 189 AC++LV A PM+ M+ +V + N E + D E + + Sbjct: 108 NAACLSLVHA-----------GLPMRNMIVSVCCAVTNNDEYLVDPTIAEIQDCKCVLTF 156 Query: 190 VMTEDG-RIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 I+ + + FT E+ L LA+ + + Sbjct: 157 AFESKNLDIVSIFTSGL---FTVEQYFQCLQLAKASAPDI 193 >UniRef50_B6HC09 Pc18g05170 protein n=25 Tax=Leotiomyceta RepID=B6HC09_PENCW Length = 265 Score = 129 bits (325), Expect = 5e-29, Method: Composition-based stats. Identities = 46/253 (18%), Positives = 85/253 (33%), Gaps = 39/253 (15%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQ---GQG 57 +R GR N++R + + + GS + G+T ++C+ R G G Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTSIMCSVHGPAEGRRGDGGSAGSGHA 73 Query: 58 WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCD 117 + + + + R R +Q R I + A ++ + TI++ Sbjct: 74 VVEVDVNVAGFAGVDRKRRAGGSDRQSSR---IATTLRSAFQSHLHTYLYPHSTISIHVS 130 Query: 118 VLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVC-DLE 176 VL ADG A++ +ALVDA PM G++ + G+ + D Sbjct: 131 VLSADGSLLAAALNACTLALVDA-----------GIPMPGLLCGCTSGMSGSASTPRDPR 179 Query: 177 YVE----------DSAAETDMNVV-----------MTEDGRIIEVQGTAEGEPFTHEELL 215 + E + + V M ED ++V L Sbjct: 180 HDELDPLLDLSLPEEQELPSLTVATTTAVPVGENNMDEDEEAMKVCVLTMESKVHATYLE 239 Query: 216 ILLALARGESNPL 228 +LA+ + + Sbjct: 240 TMLAVGIDGCSQI 252 >UniRef50_Q8ILI7 Exosome complex exonuclease rrp41, putative n=6 Tax=Plasmodium RepID=Q8ILI7_PLAF7 Length = 246 Score = 129 bits (325), Expect = 6e-29, Method: Composition-based stats. Identities = 35/228 (15%), Positives = 79/228 (34%), Gaps = 25/228 (10%) Query: 2 RPAGRSNNQVRPVTLTRN---YTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGW 58 R GR N++ R + ++ +G E G+TK+ + + + Sbjct: 13 RIDGRKNDECRLIKISLGNGNELIDVDGFSFFEIGNTKLFAYIQGPNE---YRRPDEKCL 69 Query: 59 ITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDV 118 + + P + + +++ T EI I + L I + + Sbjct: 70 VKCNVFLSPFNILEKKRKKSKDNV----TREISSYIRNICNHIILLDLYKNSEINIFLYI 125 Query: 119 LQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYV 178 ++ DGG + A++ +AL+DA +K ++A SV + + D Sbjct: 126 IERDGGLKAAAVNTCILALIDA-----------GIAIKYFISASSVLYLQNNIIVDGNQF 174 Query: 179 EDSAAETDMNVVMT-EDGRIIEVQGTAEGEPFTHEELLILLALARGES 225 E ++ ++ + + I+ ++ AE + +L Sbjct: 175 EVNSGSPELTLAIDMSSNNIVLLEFDAE---VPIDIFQSMLKTCAQAC 219 >UniRef50_Q8ID62 Exosome complex exonuclease, putative n=1 Tax=Plasmodium falciparum 3D7 RepID=Q8ID62_PLAF7 Length = 477 Score = 128 bits (323), Expect = 1e-28, Method: Composition-based stats. Identities = 37/250 (14%), Positives = 75/250 (30%), Gaps = 32/250 (12%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +R GR+ R V + G V + G TKV+C + E P K +G + Sbjct: 19 IRLDGRTFEDSRNVCINF---LKDYGHVEISIGFTKVICKITSEIVKPHDRKL-KEGILK 74 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARAL--------RAAVDLKALGEFTI 112 + +EI+ +I R L + + + I Sbjct: 75 INLDI-----DNFIEDNENSDNMSDECLEIKNIIDRVLKTSNIINFESLCIIPGKKVWCI 129 Query: 113 TLDCDVLQADGGTRTASITGACVALVDAL------------QKLVENGKLKTNPMKGMVA 160 ++ V++ DG A A LV E + Sbjct: 130 CINIMVIENDGNLTDACYLSAYCGLVHFKNHQVRVIKNGDIIIDKEEINYSPLSILNSPI 189 Query: 161 AVSVGIVNGE--AVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILL 218 + + D E+ + +++ + ++G +I + G P ++ + Sbjct: 190 VTTFAYYEEHDVCLIDPCLHEEEFMSSKISIALNKNGNLISLLKPG-GIPLACSHIMESI 248 Query: 219 ALARGESNPL 228 +A+ + Sbjct: 249 EIAKKRILTI 258 >UniRef50_Q01D77 Putative polynucleotide phosphorylase (ISS) n=1 Tax=Ostreococcus tauri RepID=Q01D77_OSTTA Length = 615 Score = 128 bits (321), Expect = 2e-28, Method: Composition-based stats. Identities = 29/147 (19%), Positives = 53/147 (36%), Gaps = 8/147 (5%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQG 57 R GR+ VRP+ GS L G+T+ + A++ + ++ Sbjct: 428 RQDGRTTRMVRPIACEAGLLPRTHGSALFTRGETQAIGVATLGGNQDAQRVDDIEKTEDK 487 Query: 58 WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCD 117 Y P S G R + L RAL + + F ++ Sbjct: 488 RFMLHYFFPPSSVGE----TGRIGGASRREVGHGNLAERALTPIIPSQEEFPFVCRMEST 543 Query: 118 VLQADGGTRTASITGACVALVDALQKL 144 + +++G + A++ +AL+DA L Sbjct: 544 ITESNGSSSMATVCAGTLALLDAGVPL 570 Score = 55.8 bits (133), Expect = 1e-06, Method: Composition-based stats. Identities = 36/224 (16%), Positives = 68/224 (30%), Gaps = 25/224 (11%) Query: 13 PVTLTRN-YTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEY-GMLPRST 70 V L A G+V+ GDT + TA + +T Y + Sbjct: 81 RVRLETGRVGAQANGAVMASEGDTVIYATACASRELTGDGSFVP---LTVNYSERFSAAG 137 Query: 71 HTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTASI 130 T G R RL+ R +R + + + + DG T Sbjct: 138 RTAGGFRKRDGAVSERETLKARLVDRPIRPMIPKGWGYDTQVLQWL--MSFDGERSTD-- 193 Query: 131 TGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV--NGEAVCDLEYVEDSAAETDMN 188 A+ + P+K V V VG++ + E + + + + D+ Sbjct: 194 -------ALAITAASAALAVSDIPLKKPVVGVRVGLMPGSDEPIVNPSQEQMKESRLDLV 246 Query: 189 VVMTEDGRIIEVQGTAEGEPFTHEELLILLALA----RGESNPL 228 + T++ + + T +E+L +A + Sbjct: 247 LAGTDE---AVLMIEGFCDFLTTDEMLRAIAKGHEAVSKACKEI 287 >UniRef50_D2VA88 Predicted protein n=1 Tax=Naegleria gruberi RepID=D2VA88_NAEGR Length = 280 Score = 127 bits (320), Expect = 2e-28, Method: Composition-based stats. Identities = 44/210 (20%), Positives = 76/210 (36%), Gaps = 31/210 (14%) Query: 1 MRPAGRS-NNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWI 59 +R R +NQ+R + + A+GSV G+T V+C+ E + Q I Sbjct: 6 LRRDQRKTSNQLRDMQVELGVLGKADGSVKFSQGNTTVICSVCGPESSMKEKG--DQAII 63 Query: 60 TAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVL 119 + + K E + +I + L + IT+ V+ Sbjct: 64 DVMF-------------QPRDKKASEEEKEYELIIRQTLENVILTNIYPRTVITISIQVV 110 Query: 120 QADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVN-GEAVCDLEYV 178 Q DG +AS+ A +AL+DA MK + + S +N G+ + D + Sbjct: 111 QYDGCLLSASLNAASLALLDA-----------GVAMKTTLVSSSCSYLNSGDCLLDPTRI 159 Query: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEP 208 E + N + I+ T+ P Sbjct: 160 EQDFSSILHN---DDSSSYIQYYKTSSKGP 186 >UniRef50_Q9ZUI4 T2K10.14 protein n=2 Tax=Embryophyta RepID=Q9ZUI4_ARATH Length = 302 Score = 127 bits (319), Expect = 3e-28, Method: Composition-based stats. Identities = 46/258 (17%), Positives = 86/258 (33%), Gaps = 31/258 (12%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +RP GR + R + A+GS L + G T +L +E P +G I Sbjct: 36 LRPDGRQLGKARDTIVNLGLVSTADGSALAKIGSTTMLAAIRMEVMTP-STDSPDEGCIA 94 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIAR---ALRAAVDLKALGEFTITLDCD 117 E+ M P + T A+ +++ L+ + + LD Sbjct: 95 IEFHMPPICSPTVRPGRPAEAAPVISKRLSDTILSSGMIDLKELCLVSGKAAWMGYLDIY 154 Query: 118 VLQADGGTRTASITGA----------CVALVDALQKLVENGKLK---------------- 151 L ADG A++ A VAL D + + G+ Sbjct: 155 CLDADGALFDAALLAAVAAFSNLQIPIVALNDNGRIVAVTGEKDQDNALITEKEAVNKEK 214 Query: 152 -TNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFT 210 +K + +++ + + D E+S +T + VV+ +++ + Sbjct: 215 RKLTLKNIPFSLTCILHKNYILADPTTEEESIMDTLVTVVLDSSDQMVSFYKSGGAALAY 274 Query: 211 HEELLILLALARGESNPL 228 + + LAR + L Sbjct: 275 SSAIKSCVELARKRAKEL 292 >UniRef50_UPI0000522388 PREDICTED: similar to predicted protein isoform 1 n=2 Tax=Ciona intestinalis RepID=UPI0000522388 Length = 235 Score = 127 bits (318), Expect = 4e-28, Method: Composition-based stats. Identities = 32/226 (14%), Positives = 68/226 (30%), Gaps = 36/226 (15%) Query: 13 PVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTHT 72 N K+A+GS G+T V+ + + + + ++ Sbjct: 18 KFQCEMNALKNADGSAFYSQGETSVMVAVYGPGDLKETKQEIDKALVEVDF--------- 68 Query: 73 RNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTASITG 132 G ++R + A+ L + ++Q G + +I Sbjct: 69 ----RPKLGSPTVNEKYLERFVQGVCENAIMLALHPRTAFAIIVQIMQDQGSLLSCAINA 124 Query: 133 ACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVN----------GEAVCDLEYVEDSA 182 CVAL DA MK + AV+V + + + E+S Sbjct: 125 VCVALQDA-----------GVSMKHLPVAVTVALRKESESELEDATDVLIINPTIKEESE 173 Query: 183 AETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 + + + V + + + P ++ L A+ + + Sbjct: 174 SFSILTFVFDSVNKNLLCMHS--QGPLLPKQHERCLKAAKEATEEV 217 >UniRef50_Q05636 Exosome complex component RRP45 n=17 Tax=Saccharomycetales RepID=RRP45_YEAST Length = 305 Score = 127 bits (318), Expect = 4e-28, Method: Composition-based stats. Identities = 46/261 (17%), Positives = 84/261 (32%), Gaps = 43/261 (16%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GRS +Q R V +T G V V+ G+TKV C S + P + +G Sbjct: 24 RLDGRSFDQFRDVEITFG---KEFGDVSVKMGNTKVHCRISCQIAQP-YEDRPFEGLFVI 79 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRA--AVDLKALG------EFTIT 113 + P + G + R+I +++R A+D++ L + + Sbjct: 80 STEISPMAGSQFENGNIT----GEDEVLCSRIIEKSVRRSGALDVEGLCIVAGSKCWAVR 135 Query: 114 LDCDVLQADGGTRTASITGACVALVDALQKL------------VENGKLKTNPMKGMVAA 161 D L DGG AS L+ + V + + + Sbjct: 136 ADVHFLDCDGGFIDASCIAVMAGLMHFKKPDITVHGEQIIVHPVNEREPVPLGILHIPIC 195 Query: 162 VSVGIVN--------------GEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGE 207 V+ N ++ D E+ + + V + ++ +++V G Sbjct: 196 VTFSFFNPQDTEENIKGETNSEISIIDATLKEELLRDGVLTVTLNKNREVVQVSKAG-GL 254 Query: 208 PFTHEELLILLALARGESNPL 228 P L+ A + Sbjct: 255 PMDALTLMKCCHEAYSIIEKI 275 >UniRef50_C1M111 Exosome complex exonuclease rrp42 (Ribosomal rna processing protein 42), putative n=2 Tax=Schistosoma RepID=C1M111_SCHMA Length = 254 Score = 126 bits (317), Expect = 5e-28, Method: Composition-based stats. Identities = 46/239 (19%), Positives = 90/239 (37%), Gaps = 16/239 (6%) Query: 4 AGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEY 63 GR ++ RP+ + N HA GS + G+T ++C +E G P L +G I Sbjct: 2 DGRGPSEYRPLEIETNILSHATGSASIRIGETFIVCCVKMEVGKP-SLTNTSEGRIEINV 60 Query: 64 GMLPRSTHTRNAREAAKGKQGGRTMEIQRLIAR--ALRAAVDLKALGEFTITLDCDVLQA 121 P +TH N + A++ ++ +T + L + + I +D +L+ Sbjct: 61 ECYPTATHRCNEKAASELEERLKTTLQSAYQLKFIDLSPLCIQRGRQCWVIYIDLLILEG 120 Query: 122 DGGTRTASITGACVALVDALQ---------KLVENGKLKTNPMKG---MVAAVSVGIVNG 169 G AS AL++A Q + + ++V + Sbjct: 121 AGNLLDASSLVVKAALLNATQLNSLLLSVFQNNSESLEAGVQQFHGDMLPLFITVHKIGK 180 Query: 170 EAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 + D E++ + + +++V+ DG I ++ E ++ + LA L Sbjct: 181 AYLIDASKEEEACSLSRLSLVIYPDGSIGSLEQDGCCSC-QLESIVEMSQLASIVGKKL 238 >UniRef50_C1C167 Exosome complex exonuclease RRP45 n=4 Tax=Caligidae RepID=C1C167_9MAXI Length = 366 Score = 126 bits (317), Expect = 6e-28, Method: Composition-based stats. Identities = 37/248 (14%), Positives = 71/248 (28%), Gaps = 43/248 (17%) Query: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 R GR ++ R + + G+ V GDT+VL + S G PR + +G + Sbjct: 20 RLDGRKVDERRDICIHLG---REWGTAEVSLGDTRVLASTSCSVGEPRSV-RPNEGILKT 75 Query: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARAL--------RAAVDLKALGEFTIT 113 P S + +E+ R+I R L + + I+ Sbjct: 76 HIE--PLS---------KRSMTTEALVELNRVIERVLKESKCVDMESLCISSEEKVWIIS 124 Query: 114 LDCDVLQADGGTRTASITGACVALVDALQKLVE------------NGKLKTNPMKGMVAA 161 L+ +L G + AL + V + Sbjct: 125 LEMTLLSDAGNAADCASIAGLAALCHFKRPDVTLKGDKIRIHPFYGRDPVPLAIHHHPVL 184 Query: 162 VSVGIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLIL--LA 219 + + ++ D E++ + + M I + + + L Sbjct: 185 STFALYGRVSLLDPSREEEAVMDGKVVPGMNPYREICALHLAG------QKLVDKALVLQ 238 Query: 220 LARGESNP 227 LA + Sbjct: 239 LASKAAEE 246 >UniRef50_Q7QK69 AGAP002177-PA (Fragment) n=1 Tax=Anopheles gambiae RepID=Q7QK69_ANOGA Length = 234 Score = 126 bits (316), Expect = 7e-28, Method: Composition-based stats. Identities = 36/219 (16%), Positives = 74/219 (33%), Gaps = 27/219 (12%) Query: 11 VRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRST 70 +R + N ++ S + G T+V+ A+ V + +Y Sbjct: 15 LRRMVCETNVLSRSDCSAALSQGATQVMVAANGPAEVKFKNAESENCHLEVQY------- 67 Query: 71 HTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTASI 130 + G++ + ++ LI R+ V A + + + GG SI Sbjct: 68 ------RSNAGQEDIQHRLMESLIKRSFVRVVATPAFCRSAVYIYVQEMTDRGGLLACSI 121 Query: 131 TGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV-NGEAVCDLEYVEDSAAETDMNV 189 +C+AL+ + VAAV + +G + D ++ + A + Sbjct: 122 NASCLALIT-----------SGVELNFTVAAVHCIMTEDGAMILDPDHKQLKLARSSFTF 170 Query: 190 VMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL 228 V G+ + FT EE ++++ R + Sbjct: 171 VFDSIGKNT--VTSYVHGSFTFEEYEQVVSVCRKAVEKI 207 >UniRef50_C4R631 Protein involved in rRNA processing n=2 Tax=Saccharomyceta RepID=C4R631_PICPG Length = 298 Score = 125 bits (315), Expect = 8e-28, Method: Composition-based stats. Identities = 36/251 (14%), Positives = 82/251 (32%), Gaps = 34/251 (13%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +R GR Q+RP+ + G +LV GD KV+ S E P + +G Sbjct: 17 LRLDGRKPMQMRPLNIEVGPD---YGQMLVTLGDAKVVVRISSEIVTP-YEDRPFEGIFQ 72 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARA----LRAAVDLKALGEFTITLDC 116 + + N + ++ + I++ I R+ L + + +++ D Sbjct: 73 VSSELDGMGHPSFNEASHRQEEEVMLSRLIEKAIRRSNALDLESLCIIAGQKCWSVRADV 132 Query: 117 DVLQADGGTRTASITGACVALVDALQKLV------------ENGKLKTNPMKGMVAAVSV 164 ++ DG G L+ + + + + + V+ Sbjct: 133 HIIDYDGNMTDIVCIGVIAGLLHFKKPDISIRNGTVILHDMSEREPVPLSVLHIPICVTF 192 Query: 165 -------------GIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTH 211 G + D E++ + + + + + + ++ + G Sbjct: 193 QIYSSGSMEDNVKGDGREFVIVDATLKEEALTQGTITLTLNSNKELCQMSKSG-GINLEV 251 Query: 212 EELLILLALAR 222 +E+L L A+ Sbjct: 252 DEILSLTNEAQ 262 >UniRef50_C1BRT2 Exosome complex exonuclease RRP43 n=1 Tax=Caligus rogercresseyi RepID=C1BRT2_9MAXI Length = 279 Score = 125 bits (315), Expect = 9e-28, Method: Composition-based stats. Identities = 48/251 (19%), Positives = 94/251 (37%), Gaps = 31/251 (12%) Query: 1 MRPAGR--SNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGW 58 +R GR +RP++++ A+GS +V G T V+C +++ + +G+ Sbjct: 24 LRLDGREGGLESIRPISISSGSIASADGSAIVRKGHTTVICGITLQIAS-LDEETPTKGY 82 Query: 59 ITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARAL--RAAVDLKALG------EF 110 I + +KG M + + I + VD K L + Sbjct: 83 IVPHVDLPSMCHP---RIYKSKGPTAEEAMILTKFIMDVILNSEVVDPKDLCIVPGEIVW 139 Query: 111 TITLDCDVLQADGGTRTASITGACVALVDALQKLVE---------------NGKLKTNPM 155 + +D L DG R A +T +AL V + + + Sbjct: 140 VLKIDLTCLNQDGNLRDALVTALILALKSLRFPKVVSYKAEDEDKTQINVFEKEHSSLRL 199 Query: 156 KGMVAAVSVGIV-NGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEEL 214 K + +VS+ ++ + D E++ A + VV+ + + + GEP E + Sbjct: 200 KNIPVSVSIAVMEGERLLVDPTDEEETFATDSITVVLNAEEELCYLSKNG-GEPIFDELM 258 Query: 215 LILLALARGES 225 ++ LAR ++ Sbjct: 259 NKVIDLARAQA 269 >UniRef50_Q29QQ9 Rrp42 n=25 Tax=Coelomata RepID=Q29QQ9_DROME Length = 296 Score = 125 bits (315), Expect = 9e-28, Method: Composition-based stats. Identities = 43/250 (17%), Positives = 73/250 (29%), Gaps = 24/250 (9%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 R GRS RP+ L +A GS + +T +L E VP L G + Sbjct: 22 FRCDGRSRRDYRPMDLETGLVSNASGSARLRLANTDILVGVKTEIDVPNPLT-PEFGKLE 80 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARAL----RAAVDLKALGEFTITLDC 116 +T R + Q + +Q L R + + + +D Sbjct: 81 FFVDCSANATPEFEGRGGSDLAQ-ELILSLQNAYESPLAFNYRTLCLIPGQQCWKLYIDI 139 Query: 117 DVLQADGGTRTASITGACVALVDALQKLVENG----------------KLKTNPMKGMVA 160 +L+ G A A AL + V ++ + Sbjct: 140 LILECGGNLHDAVSLAAKAALFNTKLPRVTATMLDAGITDLIISDNPYDCTRIGIETVPL 199 Query: 161 AVSVGIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGT--AEGEPFTHEELLILL 218 V+V + + D E+ + M V ++ + GT G + + L Sbjct: 200 LVTVCKIGDYVLVDPSAEEEVCSTVSMVVSVSMRNGQAFLSGTHLTGGGAMHRDTMRNCL 259 Query: 219 ALARGESNPL 228 L L Sbjct: 260 ELGLAIGEHL 269 >UniRef50_Q23PW9 3' exoribonuclease family, domain 1 containing protein n=1 Tax=Tetrahymena thermophila SB210 RepID=Q23PW9_TETTH Length = 776 Score = 125 bits (314), Expect = 1e-27, Method: Composition-based stats. Identities = 33/251 (13%), Positives = 85/251 (33%), Gaps = 32/251 (12%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 +R GR R + + + G + V GDT ++ + E P+ + +G + Sbjct: 465 IRLDGRKLMDSRNIKVIFG---NNVGEIEVLIGDTHIITKTTAEIIQPKQ-EKPNEGSLK 520 Query: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALR--AAVDLKALG------EFTI 112 + ++ ++ + EIQ+L+ + ++ A+D+++L ++I Sbjct: 521 FNVDLSSM----QDEQQPNNVNIKKYSNEIQKLLEKIIKGSKAIDMESLCIVTNKRVWSI 576 Query: 113 TLDCDVLQADGGTRTASITGACVALVDALQKLVE-----------NGKLKTNPMKGMVAA 161 +D V+ G A ++L+ + V + + + Sbjct: 577 NVDSSVVSNGGNLIDAIYLSVIISLLHFRKPYVSVEQQSNIKIHTEKNPQPLSIHHIPIP 636 Query: 162 VSVGIVNGEAVC--DLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLI--L 217 + + D +E+ E + + + + + G P E + L Sbjct: 637 FTFAFFKKSTLLVSDPLVLEEQIMEGRLTISVNIYNDVCNIHKPG-GAPIKLELINKQML 695 Query: 218 LALARGESNPL 228 + + + + Sbjct: 696 VEVCLNKIKQM 706 >UniRef50_UPI00005A29C6 PREDICTED: similar to Exosome complex exonuclease RRP41 (Ribosomal RNA processing protein 41) (Exosome component 4) (p12A) isoform 3 n=1 Tax=Canis lupus familiaris RepID=UPI00005A29C6 Length = 226 Score = 125 bits (314), Expect = 1e-27, Method: Composition-based stats. Identities = 44/212 (20%), Positives = 80/212 (37%), Gaps = 20/212 (9%) Query: 19 NYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKG-QGQGWITAEYGMLPRSTHTRNARE 77 G V G + + + + + + + +Y ST R R Sbjct: 12 GSRGRVTGRRSVSCGGVSLTHVSFLPQIRGSRARALPDRALVNCQYSSATFSTGERKRRP 71 Query: 78 AAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTASITGACVAL 137 ++ E+ + + AA+ + I + VLQADGGT A + A +A+ Sbjct: 72 HG----DRKSCEMGLHLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNAATLAV 127 Query: 138 VDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNVV-MTEDGR 196 +DA PM+ V A S G V+ A+ DL +VE++A + + + G+ Sbjct: 128 LDA-----------GIPMRDFVCACSAGFVDNTALADLSHVEEAAGGPQLALALLPASGQ 176 Query: 197 IIEVQGTAEGEPFTHEELLILLALARGESNPL 228 I ++ A + L +L A + + Sbjct: 177 IALLEMDAR---LHEDHLEQVLEAAARAARDV 205 >UniRef50_Q5CPV0 Archeo-eukaryotic exosomal RNAse n=2 Tax=Cryptosporidium RepID=Q5CPV0_CRYPV Length = 351 Score = 125 bits (314), Expect = 1e-27, Method: Composition-based stats. Identities = 43/248 (17%), Positives = 83/248 (33%), Gaps = 38/248 (15%) Query: 1 MRPAGRSNNQVRPVTLTRNYTKH---AEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQG 57 +R GR ++R + N +G+V E G K++ + + + Sbjct: 98 IRQDGRKLTEIRRIKCIINEGNQRGIEDGNVYFEQGQNKLIVSIVGPVPISGNINYTNNN 157 Query: 58 ---WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITL 114 I + + P S+ R R GK +E +I+R + + + I + Sbjct: 158 SGVQINCNFRVSPFSSQDRRKR----GKNDRFCIESGLIISRTFSSVIC-DQYSKSQIII 212 Query: 115 DCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCD 174 + +L+ DG R+A+I +AL + MK ++ + + G+ + + D Sbjct: 213 NIIILEGDGSVRSAAINATSIALA-----------ISGISMKDLIVSATCGLYGKQVLYD 261 Query: 175 LEYVE---------------DSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLA 219 L E D+ +TD V + I V E + L+ Sbjct: 262 LTQSEMESLKGTLLMAIHSTDNDIDTDTENVGNGNSDISPVTID-LNTKLKPEMIEFLMN 320 Query: 220 LARGESNP 227 Sbjct: 321 ETFSACKQ 328 >UniRef50_A7AQY6 Exosome complex exonuclease rrp41, putative n=1 Tax=Babesia bovis RepID=A7AQY6_BABBO Length = 259 Score = 125 bits (313), Expect = 2e-27, Method: Composition-based stats. Identities = 43/237 (18%), Positives = 85/237 (35%), Gaps = 31/237 (13%) Query: 1 MRPAGRSNNQVRPVTLTRNY-----TKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQG 55 +R GR ++VR + + + +G V G TKV + + R +G Sbjct: 12 LRIDGRRPSEVRHIDILCGPECGVDIINYDGVAQVTQGLTKVQAFINGPTDIGRSKTKEG 71 Query: 56 QGW------ITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGE 109 I E + R++ + T+EI R + + Sbjct: 72 FETADSPVEIRCEVCIPS-------ERKSMGHRNNDATVEISRAVVGTFEPVIISHLYKN 124 Query: 110 FTITLDCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNG 169 TI + +VL+ADGG + I +AL+DA MK ++ A + ++N Sbjct: 125 STIHIFVNVLEADGGVKATVINAVLIALIDA-----------GIAMKDIIVACTAVMLNE 173 Query: 170 EAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESN 226 + D +E +A+ ++ + ++ E+ + + ++ A S Sbjct: 174 TLLIDPNQLEINASIMELTLALSVSNE--ELIHIDLRSKYPIKSYAEIIEKAIKGSE 228 >UniRef50_B0XFZ4 Exosome complex exonuclease RRP46 n=2 Tax=Culicini RepID=B0XFZ4_CULQU Length = 217 Score = 124 bits (312), Expect = 2e-27, Method: Composition-based stats. Identities = 37/218 (16%), Positives = 71/218 (32%), Gaps = 29/218 (13%) Query: 9 NQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPR 68 + +RP+ N ++GS ++ G+T V + + V + ++ + Sbjct: 8 DSLRPMFCELNILTRSDGSAMLTQGETAVTASVNGPVEVKLQHMNVEKSYVEIHF----- 62 Query: 69 STHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTA 128 G ++ LI +A+ +++ +Q GG Sbjct: 63 --------RPRSGMGSVNDRLLENLIRNTYESALLTALHPRTAVSIQIQEMQDRGGLVAC 114 Query: 129 SITGACVALVDALQKLVENGKLKTNPMKGMVAAV-SVGIVNGEAVCDLEYVEDSAAETDM 187 +I C+AL+D MK +VAAV SV G D + + A Sbjct: 115 AINAVCLALID-----------SGIEMKYLVAAVHSVLDEEGGITLDPDELRAKDARARF 163 Query: 188 NVVM-TEDGRIIEVQGTAEGEPFTHEELLILLALARGE 224 V + + + FT E+ L ++ Sbjct: 164 TFVFENTSRNTVSIYTHGK---FTSEQYHRALRMSTDA 198 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.312 0.138 0.355 Lambda K H 0.267 0.0418 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,177,490,619 Number of Sequences: 3077464 Number of extensions: 41517945 Number of successful extensions: 134525 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 814 Number of HSP's successfully gapped in prelim test: 328 Number of HSP's that attempted gapping in prelim test: 130942 Number of HSP's gapped (non-prelim): 1470 length of query: 228 length of database: 1,040,396,356 effective HSP length: 124 effective length of query: 104 effective length of database: 658,790,820 effective search space: 68514245280 effective search space used: 68514245280 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.3 bits) S2: 91 (39.6 bits)