Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	R	P	A	G	R	S	N	N	Q	V	R	P	V	T	L	T	R	N	Y	T	K	H	A	E	G	S	V	L	V	E	F	G	D	T	K	V	L	C	T	A	S	I	E	E	G	V	P	R	F	L	K	G	Q	G	Q	G	W	I	T
Secondary structure
SS confidence
Disorder		?	?	?	?																																								?	?		?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		A	E	Y	G	M	L	P	R	S	T	H	T	R	N	A	R	E	A	A	K	G	K	Q	G	G	R	T	M	E	I	Q	R	L	I	A	R	A	L	R	A	A	V	D	L	K	A	L	G	E	F	T	I	T	L	D	C	D	V	L	Q
Secondary structure
SS confidence
Disorder										?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		A	D	G	G	T	R	T	A	S	I	T	G	A	C	V	A	L	V	D	A	L	Q	K	L	V	E	N	G	K	L	K	T	N	P	M	K	G	M	V	A	A	V	S	V	G	I	V	N	G	E	A	V	C	D	L	E	Y	V	E	D
Secondary structure
SS confidence
Disorder																												?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Sequence		S	A	A	E	T	D	M	N	V	V	M	T	E	D	G	R	I	I	E	V	Q	G	T	A	E	G	E	P	F	T	H	E	E	L	L	I	L	L	A	L	A	R	G	E	S	N	P	L
Secondary structure
SS confidence
Disorder																											?																				?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1uds chain A Region: 2 - 228 Aligned: 227 Modelled: 227 Confidence: 100.0% Identity: 56% PDB header:transferase Chain: A: PDB Molecule:ribonuclease ph; PDBTitle: crystal structure of the trna processing enzyme rnase ph r126a mutant2 from aquifex aeolicus Phyre2 PDB 3dd6 chain A Region: 1 - 228 Aligned: 227 Modelled: 228 Confidence: 100.0% Identity: 56% PDB header:transferase Chain: A: PDB Molecule:ribonuclease ph; PDBTitle: crystal structure of rph, an exoribonuclease from bacillus2 anthracis at 1.7 a resolution Phyre2 PDB 1r6m chain A Region: 2 - 228 Aligned: 224 Modelled: 224 Confidence: 100.0% Identity: 68% PDB header:transferase Chain: A: PDB Molecule:ribonuclease ph; PDBTitle: crystal structure of the trna processing enzyme rnase ph from2 pseudomonas aeruginosa in complex with phosphate Phyre2 PDB 3b4t chain C Region: 2 - 228 Aligned: 222 Modelled: 222 Confidence: 100.0% Identity: 56% PDB header:transferase Chain: C: PDB Molecule:ribonuclease ph; PDBTitle: crystal structure of mycobacterium tuberculosis rnase ph, the2 mycobacterium tuberculosis structural genomics consortium target3 rv1340 Phyre2 PDB 2pnz chain B Region: 1 - 228 Aligned: 221 Modelled: 228 Confidence: 100.0% Identity: 26% PDB header:hydrolase/hydrolase Chain: B: PDB Molecule:probable exosome complex exonuclease 2; PDBTitle: crystal structure of the p. abyssi exosome rnase ph ring2 complexed with udp and gmp Phyre2 PDB 2wnr chain C Region: 1 - 228 Aligned: 221 Modelled: 228 Confidence: 100.0% Identity: 24% PDB header:hydrolase Chain: C: PDB Molecule:probable exosome complex exonuclease 2; PDBTitle: the structure of methanothermobacter thermautotrophicus2 exosome core assembly Phyre2 PDB 2ba0 chain I Region: 1 - 228 Aligned: 219 Modelled: 228 Confidence: 100.0% Identity: 23% PDB header:rna binding protein Chain: I: PDB Molecule:archeal exosome rna binding protein rrp42; PDBTitle: archaeal exosome core Phyre2 PDB 2c37 chain L Region: 1 - 228 Aligned: 209 Modelled: 217 Confidence: 100.0% Identity: 30% PDB header:hydrolase Chain: L: PDB Molecule:probable exosome complex exonuclease 1; PDBTitle: rnase ph core of the archaeal exosome in complex with u82 rna Phyre2 PDB 2nn6 chain B Region: 1 - 228 Aligned: 210 Modelled: 217 Confidence: 100.0% Identity: 26% PDB header:hydrolase/transferase Chain: B: PDB Molecule:exosome complex exonuclease rrp41; PDBTitle: structure of the human rna exosome composed of rrp41, rrp45,2 rrp46, rrp43, mtr3, rrp42, csl4, rrp4, and rrp40 Phyre2 PDB 2wnr chain B Region: 1 - 228 Aligned: 209 Modelled: 217 Confidence: 100.0% Identity: 33% PDB header:hydrolase Chain: B: PDB Molecule:probable exosome complex exonuclease 1; PDBTitle: the structure of methanothermobacter thermautotrophicus2 exosome core assembly Phyre2 PDB 2nn6 chain C Region: 1 - 228 Aligned: 221 Modelled: 228 Confidence: 100.0% Identity: 22% PDB header:hydrolase/transferase Chain: C: PDB Molecule:exosome complex exonuclease rrp43; PDBTitle: structure of the human rna exosome composed of rrp41, rrp45,2 rrp46, rrp43, mtr3, rrp42, csl4, rrp4, and rrp40 Phyre2 PDB 2po2 chain A Region: 1 - 228 Aligned: 209 Modelled: 217 Confidence: 100.0% Identity: 32% PDB header:hydrolase/hydrolase Chain: A: PDB Molecule:probable exosome complex exonuclease 1; PDBTitle: crystal structure of the p. abyssi exosome rnase ph ring2 complexed with cdp Phyre2 PDB 2br2 chain G Region: 1 - 228 Aligned: 218 Modelled: 220 Confidence: 100.0% Identity: 26% PDB header:hydrolase Chain: G: PDB Molecule:exosome complex exonuclease 2; PDBTitle: rnase ph core of the archaeal exosome Phyre2 PDB 2nn6 chain E Region: 1 - 228 Aligned: 221 Modelled: 228 Confidence: 100.0% Identity: 17% PDB header:hydrolase/transferase Chain: E: PDB Molecule:exosome complex exonuclease rrp42; PDBTitle: structure of the human rna exosome composed of rrp41, rrp45,2 rrp46, rrp43, mtr3, rrp42, csl4, rrp4, and rrp40 Phyre2 PDB 2ba1 chain D Region: 1 - 228 Aligned: 212 Modelled: 217 Confidence: 100.0% Identity: 32% PDB header:rna binding protein Chain: D: PDB Molecule:archaeal exosome complex exonuclease rrp41; PDBTitle: archaeal exosome core Phyre2 PDB 3hkm chain B Region: 2 - 228 Aligned: 202 Modelled: 203 Confidence: 100.0% Identity: 23% PDB header:hydrolase Chain: B: PDB Molecule:os03g0854200 protein; PDBTitle: crystal structure of rice(oryza sativa) rrp46 Phyre2 PDB 2wp8 chain B Region: 1 - 228 Aligned: 192 Modelled: 200 Confidence: 100.0% Identity: 23% PDB header:hydrolase Chain: B: PDB Molecule:exosome complex component ski6; PDBTitle: yeast rrp44 nuclease Phyre2 PDB 1e3h chain A Region: 1 - 228 Aligned: 212 Modelled: 217 Confidence: 100.0% Identity: 22% PDB header:polyribonucleotide transferase Chain: A: PDB Molecule:guanosine pentaphosphate synthetase; PDBTitle: semet derivative of streptomyces antibioticus pnpase/gpsi2 enzyme Phyre2 PDB 2wp8 chain A Region: 1 - 228 Aligned: 204 Modelled: 210 Confidence: 100.0% Identity: 19% PDB header:hydrolase Chain: A: PDB Molecule:exosome complex component rrp45; PDBTitle: yeast rrp44 nuclease Phyre2 PDB 3cdi chain A Region: 1 - 228 Aligned: 198 Modelled: 208 Confidence: 100.0% Identity: 27% PDB header:transferase Chain: A: PDB Molecule:polynucleotide phosphorylase; PDBTitle: crystal structure of e. coli pnpase Phyre2 1 c1udsA_ 2 c3dd6A_ 3 c1r6mA_ 4 c3b4tC_ 5 c2pnzB_ 6 c2wnrC_ 7 c2ba0I_ 8 c2c37L_ 9 c2nn6B_ 10 c2wnrB_ 11 c2nn6C_ 12 c2po2A_ 13 c2br2G_ 14 c2nn6E_ 15 c2ba1D_ 16 c3hkmB_ 17 c2wp8B_ 18 c1e3hA_ 19 c2wp8A_ 20 c3cdiA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1udsA_ 100.0 56 PDB header:transferase Chain: A: PDB Molecule:ribonuclease ph; PDBTitle: crystal structure of the trna processing enzyme rnase ph r126a mutant2 from aquifex aeolicus 2 c3dd6A_ 100.0 56 PDB header:transferase Chain: A: PDB Molecule:ribonuclease ph; PDBTitle: crystal structure of rph, an exoribonuclease from bacillus2 anthracis at 1.7 a resolution 3 c1r6mA_ 100.0 68 PDB header:transferase Chain: A: PDB Molecule:ribonuclease ph; PDBTitle: crystal structure of the trna processing enzyme rnase ph from2 pseudomonas aeruginosa in complex with phosphate 4 c3b4tC_ 100.0 56 PDB header:transferase Chain: C: PDB Molecule:ribonuclease ph; PDBTitle: crystal structure of mycobacterium tuberculosis rnase ph, the2 mycobacterium tuberculosis structural genomics consortium target3 rv1340 5 c2pnzB_ 100.0 26 PDB header:hydrolase/hydrolase Chain: B: PDB Molecule:probable exosome complex exonuclease 2; PDBTitle: crystal structure of the p. abyssi exosome rnase ph ring2 complexed with udp and gmp 6 c2wnrC_ 100.0 24 PDB header:hydrolase Chain: C: PDB Molecule:probable exosome complex exonuclease 2; PDBTitle: the structure of methanothermobacter thermautotrophicus2 exosome core assembly 7 c2ba0I_ 100.0 23 PDB header:rna binding protein Chain: I: PDB Molecule:archeal exosome rna binding protein rrp42; PDBTitle: archaeal exosome core 8 c2c37L_ 100.0 30 PDB header:hydrolase Chain: L: PDB Molecule:probable exosome complex exonuclease 1; PDBTitle: rnase ph core of the archaeal exosome in complex with u82 rna 9 c2nn6B_ 100.0 26 PDB header:hydrolase/transferase Chain: B: PDB Molecule:exosome complex exonuclease rrp41; PDBTitle: structure of the human rna exosome composed of rrp41, rrp45,2 rrp46, rrp43, mtr3, rrp42, csl4, rrp4, and rrp40 10 c2wnrB_ 100.0 33 PDB header:hydrolase Chain: B: PDB Molecule:probable exosome complex exonuclease 1; PDBTitle: the structure of methanothermobacter thermautotrophicus2 exosome core assembly 11 c2nn6C_ 100.0 22 PDB header:hydrolase/transferase Chain: C: PDB Molecule:exosome complex exonuclease rrp43; PDBTitle: structure of the human rna exosome composed of rrp41, rrp45,2 rrp46, rrp43, mtr3, rrp42, csl4, rrp4, and rrp40 12 c2po2A_ 100.0 32 PDB header:hydrolase/hydrolase Chain: A: PDB Molecule:probable exosome complex exonuclease 1; PDBTitle: crystal structure of the p. abyssi exosome rnase ph ring2 complexed with cdp 13 c2br2G_ 100.0 26 PDB header:hydrolase Chain: G: PDB Molecule:exosome complex exonuclease 2; PDBTitle: rnase ph core of the archaeal exosome 14 c2nn6E_ 100.0 17 PDB header:hydrolase/transferase Chain: E: PDB Molecule:exosome complex exonuclease rrp42; PDBTitle: structure of the human rna exosome composed of rrp41, rrp45,2 rrp46, rrp43, mtr3, rrp42, csl4, rrp4, and rrp40 15 c2ba1D_ 100.0 32 PDB header:rna binding protein Chain: D: PDB Molecule:archaeal exosome complex exonuclease rrp41; PDBTitle: archaeal exosome core 16 c3hkmB_ 100.0 23 PDB header:hydrolase Chain: B: PDB Molecule:os03g0854200 protein; PDBTitle: crystal structure of rice(oryza sativa) rrp46 17 c2wp8B_ 100.0 23 PDB header:hydrolase Chain: B: PDB Molecule:exosome complex component ski6; PDBTitle: yeast rrp44 nuclease 18 c1e3hA_ 100.0 22 PDB header:polyribonucleotide transferase Chain: A: PDB Molecule:guanosine pentaphosphate synthetase; PDBTitle: semet derivative of streptomyces antibioticus pnpase/gpsi2 enzyme 19 c2wp8A_ 100.0 19 PDB header:hydrolase Chain: A: PDB Molecule:exosome complex component rrp45; PDBTitle: yeast rrp44 nuclease 20 c3cdiA_ 100.0 27 PDB header:transferase Chain: A: PDB Molecule:polynucleotide phosphorylase; PDBTitle: crystal structure of e. coli pnpase 21 c3cdjA_ not modelled 100.0 28 PDB header:transferase Chain: A: PDB Molecule:polynucleotide phosphorylase; PDBTitle: crystal structure of the e. coli kh/s1 domain truncated2 pnpase 22 c2nn6F_ not modelled 100.0 25 PDB header:hydrolase/transferase Chain: F: PDB Molecule:exosome component 6; PDBTitle: structure of the human rna exosome composed of rrp41, rrp45,2 rrp46, rrp43, mtr3, rrp42, csl4, rrp4, and rrp40 23 c2nn6D_ not modelled 100.0 22 PDB header:hydrolase/transferase Chain: D: PDB Molecule:exosome complex exonuclease rrp46; PDBTitle: structure of the human rna exosome composed of rrp41, rrp45,2 rrp46, rrp43, mtr3, rrp42, csl4, rrp4, and rrp40 24 d1udsa1 not modelled 100.0 59 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:Ribonuclease PH domain 1-like 25 d1r6la1 not modelled 100.0 70 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:Ribonuclease PH domain 1-like 26 d2ba0g1 not modelled 100.0 25 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:Ribonuclease PH domain 1-like 27 d2nn6c1 not modelled 100.0 20 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:Ribonuclease PH domain 1-like 28 d2je6b1 not modelled 100.0 30 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:Ribonuclease PH domain 1-like 29 d2nn6b1 not modelled 100.0 25 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:Ribonuclease PH domain 1-like 30 d2ba0d1 not modelled 100.0 34 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:Ribonuclease PH domain 1-like 31 d2je6a1 not modelled 100.0 29 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:Ribonuclease PH domain 1-like 32 d2nn6e1 not modelled 100.0 19 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:Ribonuclease PH domain 1-like 33 d2nn6a1 not modelled 100.0 24 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:Ribonuclease PH domain 1-like 34 d1e3ha3 not modelled 100.0 20 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:Ribonuclease PH domain 1-like 35 d1oysa1 not modelled 100.0 64 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:Ribonuclease PH domain 1-like 36 d2nn6f1 not modelled 100.0 30 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:Ribonuclease PH domain 1-like 37 d1e3ha2 not modelled 100.0 15 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:Ribonuclease PH domain 1-like 38 d2nn6d1 not modelled 100.0 24 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:Ribonuclease PH domain 1-like 39 c3krnB_ not modelled 99.9 19 PDB header:hydrolase Chain: B: PDB Molecule:protein c14a4.5, confirmed by transcript evidence; PDBTitle: crystal structure of c. elegans cell-death-related nuclease 5(crn-5) 40 d2je6a2 not modelled 99.7 22 Fold:Ribonuclease PH domain 2-like Superfamily:Ribonuclease PH domain 2-like Family:Ribonuclease PH domain 2-like 41 d2ba0g2 not modelled 99.7 19 Fold:Ribonuclease PH domain 2-like Superfamily:Ribonuclease PH domain 2-like Family:Ribonuclease PH domain 2-like 42 d2nn6a2 not modelled 99.6 15 Fold:Ribonuclease PH domain 2-like Superfamily:Ribonuclease PH domain 2-like Family:Ribonuclease PH domain 2-like 43 d1oysa2 not modelled 99.6 48 Fold:Ribonuclease PH domain 2-like Superfamily:Ribonuclease PH domain 2-like Family:Ribonuclease PH domain 2-like 44 d2nn6e2 not modelled 99.6 12 Fold:Ribonuclease PH domain 2-like Superfamily:Ribonuclease PH domain 2-like Family:Ribonuclease PH domain 2-like 45 d2nn6c2 not modelled 99.6 18 Fold:Ribonuclease PH domain 2-like Superfamily:Ribonuclease PH domain 2-like Family:Ribonuclease PH domain 2-like 46 d1r6la2 not modelled 99.6 60 Fold:Ribonuclease PH domain 2-like Superfamily:Ribonuclease PH domain 2-like Family:Ribonuclease PH domain 2-like 47 d1udsa2 not modelled 99.6 51 Fold:Ribonuclease PH domain 2-like Superfamily:Ribonuclease PH domain 2-like Family:Ribonuclease PH domain 2-like 48 d2je6b2 not modelled 99.4 28 Fold:Ribonuclease PH domain 2-like Superfamily:Ribonuclease PH domain 2-like Family:Ribonuclease PH domain 2-like 49 d2nn6d2 not modelled 99.4 18 Fold:Ribonuclease PH domain 2-like Superfamily:Ribonuclease PH domain 2-like Family:Ribonuclease PH domain 2-like 50 d2nn6b2 not modelled 99.4 25 Fold:Ribonuclease PH domain 2-like Superfamily:Ribonuclease PH domain 2-like Family:Ribonuclease PH domain 2-like 51 d2br2b2 not modelled 99.4 29 Fold:Ribonuclease PH domain 2-like Superfamily:Ribonuclease PH domain 2-like Family:Ribonuclease PH domain 2-like 52 d2ba0d2 not modelled 99.3 29 Fold:Ribonuclease PH domain 2-like Superfamily:Ribonuclease PH domain 2-like Family:Ribonuclease PH domain 2-like 53 d2nn6f2 not modelled 98.9 21 Fold:Ribonuclease PH domain 2-like Superfamily:Ribonuclease PH domain 2-like Family:Ribonuclease PH domain 2-like 54 d1e3ha5 not modelled 97.9 27 Fold:Ribonuclease PH domain 2-like Superfamily:Ribonuclease PH domain 2-like Family:Ribonuclease PH domain 2-like 55 d1e3ha6 not modelled 96.7 24 Fold:Ribonuclease PH domain 2-like Superfamily:Ribonuclease PH domain 2-like Family:Ribonuclease PH domain 2-like 56 d1puga_ not modelled 26.6 16 Fold:YbaB-like Superfamily:YbaB-like Family:YbaB-like 57 d1j8ba_ not modelled 19.6 11 Fold:YbaB-like Superfamily:YbaB-like Family:YbaB-like 58 c3otbB_ not modelled 15.6 27 PDB header:transferase Chain: B: PDB Molecule:trna(his) guanylyltransferase; PDBTitle: crystal structure of human trnahis guanylyltransferase (thg1) - dgtp2 complex 59 c1ybxA_ not modelled 14.2 30 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: conserved hypothetical protein cth-383 from clostridium thermocellum 60 c2qm6C_ not modelled 11.6 22 PDB header:transferase Chain: C: PDB Molecule:gamma-glutamyltranspeptidase; PDBTitle: crystal structure of helicobacter pylori gamma-glutamyltranspeptidase2 in complex with glutamate 61 c3g9kD_ not modelled 11.6 33 PDB header:hydrolase Chain: D: PDB Molecule:capsule biosynthesis protein capd; PDBTitle: crystal structure of bacillus anthracis transpeptidase enzyme capd 62 c2v36A_ not modelled 11.4 22 PDB header:transferase Chain: A: PDB Molecule:gamma-glutamyltranspeptidase large chain; PDBTitle: crystal structure of gamma-glutamyl transferase from2 bacillus subtilis 63 c2z8jA_ not modelled 11.3 17 PDB header:transferase Chain: A: PDB Molecule:gamma-glutamyltranspeptidase; PDBTitle: crystal structure of escherichia coli gamma-2 glutamyltranspeptidase in complex with azaserine prepared3 in the dark 64 c3me8B_ not modelled 10.1 29 PDB header:electron transport Chain: B: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of putative electron transfer protein aq_2194 from2 aquifex aeolicus vf5 65 d2nlza1 not modelled 8.4 33 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Gamma-glutamyltranspeptidase-like 66 d2gkpa1 not modelled 8.3 18 Fold:NMB0488-like Superfamily:NMB0488-like Family:NMB0488-like 67 c2e0wA_ not modelled 6.8 17 PDB header:transferase Chain: A: PDB Molecule:gamma-glutamyltranspeptidase; PDBTitle: t391a precursor mutant protein of gamma-glutamyltranspeptidase from2 escherichia coli 68 d1qq2a_ not modelled 6.7 10 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 69 d1pugb_ not modelled 6.5 17 Fold:YbaB-like Superfamily:YbaB-like Family:YbaB-like 70 d1yexa1 not modelled 6.2 26 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 71 d1jfua_ not modelled 6.0 22 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 72 d2i3oa1 not modelled 5.9 17 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Gamma-glutamyltranspeptidase-like 73 c3fw2A_ not modelled 5.1 23 PDB header:oxidoreductase Chain: A: PDB Molecule:thiol-disulfide oxidoreductase; PDBTitle: c-terminal domain of putative thiol-disulfide oxidoreductase from2 bacteroides thetaiotaomicron. 74 c2p5qA_ not modelled 5.0 12 PDB header:oxidoreductase Chain: A: PDB Molecule:glutathione peroxidase 5; PDBTitle: crystal structure of the poplar glutathione peroxidase 5 in2 the reduced form

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0