Phyre 2 alignment of P76280 with c2ei9A_

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Job Description | P76280
Confidence | 44.89% | Date | Thu Jan 5 12:21:33 GMT 2012
Rank | 30 | Aligned Residues | 36
% Identity | 6% | Template | c2ei9A_
PDB info | PDB header:gene regulation | Chain: A: PDB Molecule:non-ltr retrotransposon r1bmks orf2 protein; | PDBTitle: crystal structure of r1bm endonuclease domain
Resolution | 2.00 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

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Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
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Query Sequence |  | W | K | V | A | A | A | Q | Y | E | P | R | K | T | S | L | T | E | Q | V | A | H | H | L | E | F | V | R | A | A | A | R | Q | Q | C | Q | L | L | V | F | P | S
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |
Template Sequence |  | P | R | L | R | I | G | Q | I | N | L | G | G | A | . | . | E | D | A | T | R | E | L | P | S | I | A | R | D | . | . | . | L | G | L | D | I | V | L | V | Q | E
Template Known Secondary structure |  |  |  |  |  |  |  |  |  |  |  | T | T |  | . | . |  |  |  |  |  | T |  |  |  |  |  |  |  | . | . | . |  | T |  | S |  |  |  |  |  | S
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
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Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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