17/01/2012 07:42:16 : INFO  : Run start: Tue Jan 17 07:42:15 GMT 2012
17/01/2012 07:42:21 : INFO  : Initialised job
17/01/2012 07:42:22 : INFO  : Renaming log file 'phyre2_20120117_074215.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/00e69d2344ae1a6c/phyre_20120117_074215.log'
17/01/2012 07:42:23 : INFO  : Initialised job:
Sequence
>batch____
MSFWKVAAAQYEPRKTSLTEQVAHHLEFVRAAARQQCQLLVFPSLSLLGCDYSRRALPAP
PDLSLLDPLCYAATTWRMTIIAGLPVEYNDRFIRGIAVFAPWRKTPGIYHQSHGACLGRR
SRTITVVDEQPQGMDMDPTCSLFTTGQCLGEPDLLASARRLQFFSHQYSIAVLMANARGN
SALWDEYGRLIVRADRGSLLLVGQRSSQGWQGDIIPLR

17/01/2012 07:42:24 : INFO  : Checked sequence
17/01/2012 07:42:27 : INFO  : Finding homologues with PSI-BLAST
17/01/2012 07:42:28 : INFO  : PSI-BLAST 3 iterations
17/01/2012 07:43:40 : INFO  : PSI-BLAST 5 iterations
17/01/2012 07:45:26 : INFO  : Finished PSI-BLAST
17/01/2012 07:45:28 : INFO  : Running Buildali to generate a3m file
17/01/2012 07:52:07 : INFO  : Converting to HMM
17/01/2012 07:52:10 : INFO  : Calibrating HMM
17/01/2012 07:52:22 : INFO  : Searching HMM database
17/01/2012 07:57:17 : INFO  : Finished buildali
17/01/2012 07:57:18 : INFO  : Predicting secondary structure
17/01/2012 07:57:27 : INFO  : Predicted secondary structure (PSI-Pred)
17/01/2012 07:57:28 : INFO  : Predicting Disordered regions
17/01/2012 07:57:32 : INFO  : Predicted Disorder (Disopred)
17/01/2012 07:57:34 : INFO  : Running memsat_svm check
17/01/2012 07:59:23 : INFO  : Globular protein
17/01/2012 07:59:24 : INFO  : Predicted Transmembrane (memsat_svm) ID '00e69d2344ae1a6c'
17/01/2012 07:59:26 : INFO  : Initialising fold library search
17/01/2012 07:59:29 : INFO  : Initialised search input
17/01/2012 07:59:31 : INFO  : Building Ensemble models
17/01/2012 07:59:35 : INFO  : Building hh.c2vhiG_.model.1.pdb
17/01/2012 07:59:49 : INFO  : Building hh.c2e2kC_.model.2.pdb
17/01/2012 08:00:00 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/00e69d2344ae1a6c/hh.c2e2kC_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/00e69d2344ae1a6c/c2e2kC_.2.pdb
17/01/2012 08:00:04 : INFO  : Building hh.c2e11B_.model.3.pdb
17/01/2012 08:00:16 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/00e69d2344ae1a6c/hh.c2e11B_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/00e69d2344ae1a6c/c2e11B_.3.pdb
17/01/2012 08:00:20 : INFO  : Building hh.c1emsB_.model.4.pdb
17/01/2012 08:00:32 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/00e69d2344ae1a6c/hh.c1emsB_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/00e69d2344ae1a6c/c1emsB_.4.pdb
17/01/2012 08:00:36 : INFO  : Building hh.c2plqA_.model.5.pdb
17/01/2012 08:00:46 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/00e69d2344ae1a6c/hh.c2plqA_.model.5.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/00e69d2344ae1a6c/c2plqA_.5.pdb
17/01/2012 08:00:50 : INFO  : Building hh.c2w1vA_.model.6.pdb
17/01/2012 08:01:01 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/00e69d2344ae1a6c/hh.c2w1vA_.model.6.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/00e69d2344ae1a6c/c2w1vA_.6.pdb
17/01/2012 08:01:05 : INFO  : Building c2vhiG_.1.pdb
17/01/2012 08:01:19 : INFO  : Building c2e2kC_.2.pdb
17/01/2012 08:01:33 : INFO  : Building c2e11B_.3.pdb
17/01/2012 08:01:46 : INFO  : Building c1emsB_.4.pdb
17/01/2012 08:01:59 : INFO  : Building c2plqA_.5.pdb
17/01/2012 08:02:12 : INFO  : Building c2w1vA_.6.pdb
17/01/2012 08:02:24 : INFO  : Building d1uf5a_.7.pdb
17/01/2012 08:02:36 : INFO  : Building c3dlaD_.8.pdb
17/01/2012 08:02:50 : INFO  : Building c3hkxA_.9.pdb
17/01/2012 08:03:02 : INFO  : Building d1f89a_.10.pdb
17/01/2012 08:03:15 : INFO  : Building d1emsa2.11.pdb
17/01/2012 08:03:28 : INFO  : Building c3n05B_.12.pdb
17/01/2012 08:03:41 : INFO  : Building d1j31a_.13.pdb
17/01/2012 08:03:55 : INFO  : Building c3ilvA_.14.pdb
17/01/2012 08:04:09 : INFO  : Building d1d9ea_.15.pdb
17/01/2012 08:04:22 : INFO  : Building d1uf3a_.16.pdb
17/01/2012 08:04:34 : INFO  : Building c3stgA_.17.pdb
17/01/2012 08:04:47 : INFO  : Building d1o60a_.18.pdb
17/01/2012 08:05:00 : INFO  : Building c3dx5A_.19.pdb
17/01/2012 08:05:13 : INFO  : Building c3sz8D_.20.pdb
17/01/2012 08:06:54 : INFO  : Finished HH model building
17/01/2012 08:06:55 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
17/01/2012 08:07:50 : INFO  : html domain output complete ID '00e69d2344ae1a6c'
17/01/2012 08:55:26 : INFO  : Run end  : Tue Jan 17 08:55:26 GMT 2012
