17/01/2012 18:12:30 : INFO  : Run start: Tue Jan 17 18:12:27 GMT 2012
17/01/2012 18:12:40 : INFO  : Initialised job
17/01/2012 18:12:44 : INFO  : Renaming log file 'phyre2_20120117_181226.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/00c25ab64d21ff82/phyre_20120117_181226.log'
17/01/2012 18:12:46 : INFO  : Initialised job:
Sequence
>batch____
MDQTYSLESFLNHVQKRDPNQTEFAQAVREVMTTLWPFLEQNPKYRQMSLLERLVEPERV
IQFRVVWVDDRNQIQVNRAWRVQFSSAIGPYKGGMRFHPSVNLSILKFLGFEQTFKNALT
TLPMGGGKGGSDFDPKGKSEGEVMRFCQALMTELYRHLGADTDVPAGDIGVGGREVGFMA
GMMKKLSNNTACVFTGKGLSFGGSLIRPEATGYGLVYFTEAMLKRHGMGFEGMRVSVSGS
GNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLIEIKASRDGRVADYAKEF
GLVYLEGQQPWSLPVDIALPCATQNELDVDAAHQLIANGVKAVAEGANMPTTIEATELFQ
QAGVLFAPGKAANAGGVATSGLEMAQNAARLGWKAEKVDARLHHIMLDIHHACVEHGGEG
EQTNYVQGANIAGFVKVADAMLAQGVI

17/01/2012 18:12:48 : INFO  : Checked sequence
17/01/2012 18:12:55 : INFO  : Finding homologues with PSI-BLAST
17/01/2012 18:12:57 : INFO  : PSI-BLAST 3 iterations
17/01/2012 18:15:05 : INFO  : PSI-BLAST 5 iterations
17/01/2012 18:17:19 : INFO  : Finished PSI-BLAST
17/01/2012 18:17:24 : INFO  : Running Buildali to generate a3m file
17/01/2012 18:27:43 : INFO  : Converting to HMM
17/01/2012 18:27:49 : INFO  : Calibrating HMM
17/01/2012 18:28:15 : INFO  : Searching HMM database
17/01/2012 18:36:09 : INFO  : Finished buildali
17/01/2012 18:36:12 : INFO  : Predicting secondary structure
17/01/2012 18:36:28 : INFO  : Predicted secondary structure (PSI-Pred)
17/01/2012 18:36:32 : INFO  : Predicting Disordered regions
17/01/2012 18:36:39 : INFO  : Predicted Disorder (Disopred)
17/01/2012 18:36:43 : INFO  : Running memsat_svm check
17/01/2012 18:40:38 : INFO  : Globular protein
17/01/2012 18:40:40 : INFO  : Predicted Transmembrane (memsat_svm) ID '00c25ab64d21ff82'
17/01/2012 18:40:43 : INFO  : Initialising fold library search
17/01/2012 18:40:50 : INFO  : Initialised search input
17/01/2012 18:40:54 : INFO  : Building Ensemble models
17/01/2012 18:41:00 : INFO  : Building hh.c2bmaA_.model.1.pdb
17/01/2012 18:41:30 : INFO  : Building hh.c1hrdA_.model.2.pdb
17/01/2012 18:41:55 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/00c25ab64d21ff82/hh.c1hrdA_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/00c25ab64d21ff82/c1hrdA_.2.pdb
17/01/2012 18:42:04 : INFO  : Building c2bmaA_.1.pdb
17/01/2012 18:42:34 : INFO  : Building c1hrdA_.2.pdb
17/01/2012 18:43:01 : INFO  : Building c3aoeC_.3.pdb
17/01/2012 18:43:28 : INFO  : Building c3aogA_.4.pdb
17/01/2012 18:43:57 : INFO  : Building c1v9lA_.5.pdb
17/01/2012 18:44:26 : INFO  : Building c1bvuF_.6.pdb
17/01/2012 18:44:54 : INFO  : Building c2tmgD_.7.pdb
17/01/2012 18:45:23 : INFO  : Building c1nr1A_.8.pdb
17/01/2012 18:45:51 : INFO  : Building c3k8zD_.9.pdb
17/01/2012 18:46:19 : INFO  : Building c2yfqA_.10.pdb
17/01/2012 18:46:46 : INFO  : Building c1bxgA_.11.pdb
17/01/2012 18:47:14 : INFO  : Building c1lehB_.12.pdb
17/01/2012 18:47:42 : INFO  : Building d1bgva1.13.pdb
17/01/2012 18:48:01 : INFO  : Building d1hwxa1.14.pdb
17/01/2012 18:48:28 : INFO  : Building d1gtma1.15.pdb
17/01/2012 18:48:56 : INFO  : Building d1bvua1.16.pdb
17/01/2012 18:49:24 : INFO  : Building d1b26a1.17.pdb
17/01/2012 18:49:52 : INFO  : Building d1bgva2.18.pdb
17/01/2012 18:50:10 : INFO  : Building d1euza1.19.pdb
17/01/2012 18:50:35 : INFO  : Building d1v9la1.20.pdb
17/01/2012 18:52:03 : INFO  : Finished HH model building
17/01/2012 18:52:06 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
17/01/2012 18:53:17 : INFO  : html domain output complete ID '00c25ab64d21ff82'
17/01/2012 20:15:54 : INFO  : Run end  : Tue Jan 17 20:15:52 GMT 2012
