BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (78 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P03689 Replication protein P n=81 Tax=root RepID=VRPP_L... 147 8e-35 UniRef50_Q5V9L0 Replication protein P (Fragment) n=1 Tax=Klebsie... 105 6e-22 UniRef50_C7BH50 Phage replication protein p n=2 Tax=Photorhabdus... 64 2e-09 UniRef50_A7MGK9 Putative uncharacterized protein n=1 Tax=Cronoba... 60 2e-08 UniRef50_A1JR53 DNA replication protein n=2 Tax=Enterobacteriace... 57 1e-07 UniRef50_B6XBD3 Putative uncharacterized protein n=3 Tax=Provide... 55 8e-07 UniRef50_Q2NTS1 Phage replication protein n=1 Tax=Sodalis glossi... 44 0.002 UniRef50_B3H0W7 Replication protein P n=1 Tax=Actinobacillus ple... 42 0.005 UniRef50_D0UIL4 Possible bacteriophage replication protein P n=1... 40 0.031 UniRef50_D2U1J2 Phage replication protein n=1 Tax=Arsenophonus n... 39 0.055 >UniRef50_P03689 Replication protein P n=81 Tax=root RepID=VRPP_LAMBD Length = 233 Score = 147 bits (372), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 73/78 (93%), Positives = 74/78 (94%) Query: 1 MVTNLYQNMRANALADAELRRKAADELTCMTARINRGETIPEPVKQLPVMGGRPLNRAQA 60 +VTNLYQNMRANAL DAELRRKAADEL MTARINRGE IPEPVKQLPVMGGRPLNRAQA Sbjct: 156 LVTNLYQNMRANALTDAELRRKAADELVHMTARINRGEAIPEPVKQLPVMGGRPLNRAQA 215 Query: 61 LAKIAEIKAKFGLKGASV 78 LAKIAEIKAKFGLKGASV Sbjct: 216 LAKIAEIKAKFGLKGASV 233 >UniRef50_Q5V9L0 Replication protein P (Fragment) n=1 Tax=Klebsiella pneumoniae RepID=Q5V9L0_KLEPN Length = 157 Score = 105 bits (261), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 50/73 (68%), Positives = 60/73 (82%) Query: 1 MVTNLYQNMRANALADAELRRKAADELTCMTARINRGETIPEPVKQLPVMGGRPLNRAQA 60 +VT LY +MRANAL+D+ELRRKA+DEL M R+N GE IPEPVKQ+P +GGRPL+ Q Sbjct: 78 LVTGLYTDMRANALSDSELRRKASDELLRMVRRMNAGEVIPEPVKQIPKLGGRPLSNEQG 137 Query: 61 LAKIAEIKAKFGL 73 L KIAEI+AKFGL Sbjct: 138 LNKIAEIRAKFGL 150 >UniRef50_C7BH50 Phage replication protein p n=2 Tax=Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949 RepID=C7BH50_PHOAA Length = 239 Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 32/73 (43%), Positives = 48/73 (65%), Gaps = 1/73 (1%) Query: 1 MVTNLYQNMRANALADAELRRKAADELTCMTARINRGETIPEPVKQLPVMGGRPLNRAQA 60 +VT LY MR L ++ELR++ + EL M+ R+ GE IP PVKQ+P + P++ +A Sbjct: 163 IVTKLYSQMRGLNLTESELRKRCSQELISMSRRMESGEQIPAPVKQIPKL-HIPVSNERA 221 Query: 61 LAKIAEIKAKFGL 73 L ++AEI+ KF L Sbjct: 222 LNRLAEIRRKFNL 234 >UniRef50_A7MGK9 Putative uncharacterized protein n=1 Tax=Cronobacter sakazakii ATCC BAA-894 RepID=A7MGK9_ENTS8 Length = 248 Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 32/74 (43%), Positives = 44/74 (59%), Gaps = 1/74 (1%) Query: 1 MVTNLYQNMRANALADAELRRKAADELTCMTARINRGETIPEPVKQL-PVMGGRPLNRAQ 59 MVT LY MR ++ EL +A E+ M RI GE IP+P + G+PL+R + Sbjct: 162 MVTALYNGMRTYCWSETELANQAGYEIKKMANRIKSGEKIPKPRTLIRSNTSGKPLSREE 221 Query: 60 ALAKIAEIKAKFGL 73 LAK+AE++ KFGL Sbjct: 222 GLAKLAELRVKFGL 235 >UniRef50_A1JR53 DNA replication protein n=2 Tax=Enterobacteriaceae RepID=A1JR53_YERE8 Length = 231 Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 29/73 (39%), Positives = 43/73 (58%), Gaps = 1/73 (1%) Query: 1 MVTNLYQNMRANALADAELRRKAADELTCMTARINRGETIPEPVKQLPVMGGRPLNRAQA 60 MVT LY R L++ +LR++ ELT M+ R GE IP PV Q+P + P++ + Sbjct: 156 MVTKLYSQQRVQGLSEQDLRKRCGKELTDMSKRFEAGEPIPAPVVQIPKL-HIPVSNERG 214 Query: 61 LAKIAEIKAKFGL 73 L IAE++AK + Sbjct: 215 LDHIAELRAKLNM 227 >UniRef50_B6XBD3 Putative uncharacterized protein n=3 Tax=Providencia alcalifaciens DSM 30120 RepID=B6XBD3_9ENTR Length = 228 Score = 54.7 bits (130), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 1/75 (1%) Query: 1 MVTNLYQNMRANALADAELRRKAADELTCMTARINRGETIPEPVKQLPVMGGRPLNRAQA 60 MVT +Y MR L+D+E+R+ + EL M RI GE IPEPV Q+ P ++ ++ Sbjct: 152 MVTKIYTEMRNRNLSDSEVRKLCSSELKTMANRIKSGEKIPEPV-QMIEQKHIPTSKEKS 210 Query: 61 LAKIAEIKAKFGLKG 75 L +A I+ + LK Sbjct: 211 LHNLAAIRERLNLKS 225 >UniRef50_Q2NTS1 Phage replication protein n=1 Tax=Sodalis glossinidius str. 'morsitans' RepID=Q2NTS1_SODGM Length = 215 Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 31/47 (65%) Query: 1 MVTNLYQNMRANALADAELRRKAADELTCMTARINRGETIPEPVKQL 47 +VT+L+ MR L D E+R+K+ L+ M R+ RG+ IP PVK++ Sbjct: 141 LVTDLFDAMRRYRLTDEEVRKKSEPLLSKMENRLGRGDVIPAPVKRI 187 >UniRef50_B3H0W7 Replication protein P n=1 Tax=Actinobacillus pleuropneumoniae serovar 7 str. AP76 RepID=B3H0W7_ACTP7 Length = 218 Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 1/75 (1%) Query: 1 MVTNLYQNMRANALADAELRRKAADELTCMTARINRGETIPEPVKQLPVMGGRPLNRAQA 60 ++T+LY ++ D LR +A L M RI GETIP P LP + Sbjct: 143 LLTDLYDRNCQHSWKDETLRNQAEKVLIAMAKRIQSGETIPAPAITLPKKSECYVPPEDV 202 Query: 61 LA-KIAEIKAKFGLK 74 ++ + AE+KAK G+K Sbjct: 203 ISNRFAELKAKMGIK 217 >UniRef50_D0UIL4 Possible bacteriophage replication protein P n=1 Tax=Aggregatibacter phage S1249 RepID=D0UIL4_9CAUD Length = 224 Score = 39.7 bits (91), Expect = 0.031, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 35/74 (47%) Query: 1 MVTNLYQNMRANALADAELRRKAADELTCMTARINRGETIPEPVKQLPVMGGRPLNRAQA 60 ++T+L R + AE R++ L M RI GE IP +QLP P + + Sbjct: 150 LLTDLCSRGRRDQWTPAEFRKECEQALKAMAKRIESGEAIPARRRQLPAQTTVPTSPEKT 209 Query: 61 LAKIAEIKAKFGLK 74 IA++K G+K Sbjct: 210 AENIAKLKQILGMK 223 >UniRef50_D2U1J2 Phage replication protein n=1 Tax=Arsenophonus nasoniae RepID=D2U1J2_9ENTR Length = 193 Score = 38.9 bits (89), Expect = 0.055, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 1/74 (1%) Query: 1 MVTNLYQNMRANALADAELRRKAADELTCMTARINRGETIPEPVKQLPVMGG-RPLNRAQ 59 +V LY+ M A +L ++ +A + +T ++ G IP+P LP P +++ Sbjct: 108 LVHELYRAMIAESLNARQVEDRARLLIDGLTKKLRTGYVIPKPQLSLPQKTCMNPTSQSV 167 Query: 60 ALAKIAEIKAKFGL 73 AL KI+ IKAKFG Sbjct: 168 ALEKISAIKAKFGF 181 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P03689 Replication protein P n=81 Tax=root RepID=VRPP_L... 118 6e-26 UniRef50_Q5V9L0 Replication protein P (Fragment) n=1 Tax=Klebsie... 113 1e-24 UniRef50_C7BH50 Phage replication protein p n=2 Tax=Photorhabdus... 107 9e-23 UniRef50_B6XBD3 Putative uncharacterized protein n=3 Tax=Provide... 105 6e-22 UniRef50_A1JR53 DNA replication protein n=2 Tax=Enterobacteriace... 103 1e-21 UniRef50_A7MGK9 Putative uncharacterized protein n=1 Tax=Cronoba... 102 4e-21 UniRef50_Q2NTS1 Phage replication protein n=1 Tax=Sodalis glossi... 71 9e-12 Sequences not found previously or not previously below threshold: UniRef50_D0UIL4 Possible bacteriophage replication protein P n=1... 69 5e-11 UniRef50_B3H0W7 Replication protein P n=1 Tax=Actinobacillus ple... 62 7e-09 UniRef50_A7JUB9 Possible bacteriophage replication protein n=1 T... 52 6e-06 UniRef50_A6VNN4 Replication P family protein n=1 Tax=Actinobacil... 51 1e-05 UniRef50_UPI0001BCFAA6 putative bacteriophage replication protei... 50 2e-05 UniRef50_D2U1J2 Phage replication protein n=1 Tax=Arsenophonus n... 48 1e-04 UniRef50_B8F4F9 Possible bacteriophage replication protein P n=3... 48 1e-04 UniRef50_B6XEW9 Putative uncharacterized protein n=2 Tax=Provide... 41 0.011 UniRef50_C5B899 DNA replication protein n=1 Tax=Edwardsiella ict... 40 0.015 >UniRef50_P03689 Replication protein P n=81 Tax=root RepID=VRPP_LAMBD Length = 233 Score = 118 bits (296), Expect = 6e-26, Method: Composition-based stats. Identities = 73/78 (93%), Positives = 74/78 (94%) Query: 1 MVTNLYQNMRANALADAELRRKAADELTCMTARINRGETIPEPVKQLPVMGGRPLNRAQA 60 +VTNLYQNMRANAL DAELRRKAADEL MTARINRGE IPEPVKQLPVMGGRPLNRAQA Sbjct: 156 LVTNLYQNMRANALTDAELRRKAADELVHMTARINRGEAIPEPVKQLPVMGGRPLNRAQA 215 Query: 61 LAKIAEIKAKFGLKGASV 78 LAKIAEIKAKFGLKGASV Sbjct: 216 LAKIAEIKAKFGLKGASV 233 >UniRef50_Q5V9L0 Replication protein P (Fragment) n=1 Tax=Klebsiella pneumoniae RepID=Q5V9L0_KLEPN Length = 157 Score = 113 bits (284), Expect = 1e-24, Method: Composition-based stats. Identities = 50/73 (68%), Positives = 60/73 (82%) Query: 1 MVTNLYQNMRANALADAELRRKAADELTCMTARINRGETIPEPVKQLPVMGGRPLNRAQA 60 +VT LY +MRANAL+D+ELRRKA+DEL M R+N GE IPEPVKQ+P +GGRPL+ Q Sbjct: 78 LVTGLYTDMRANALSDSELRRKASDELLRMVRRMNAGEVIPEPVKQIPKLGGRPLSNEQG 137 Query: 61 LAKIAEIKAKFGL 73 L KIAEI+AKFGL Sbjct: 138 LNKIAEIRAKFGL 150 >UniRef50_C7BH50 Phage replication protein p n=2 Tax=Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949 RepID=C7BH50_PHOAA Length = 239 Score = 107 bits (268), Expect = 9e-23, Method: Composition-based stats. Identities = 32/73 (43%), Positives = 48/73 (65%), Gaps = 1/73 (1%) Query: 1 MVTNLYQNMRANALADAELRRKAADELTCMTARINRGETIPEPVKQLPVMGGRPLNRAQA 60 +VT LY MR L ++ELR++ + EL M+ R+ GE IP PVKQ+P + P++ +A Sbjct: 163 IVTKLYSQMRGLNLTESELRKRCSQELISMSRRMESGEQIPAPVKQIPKL-HIPVSNERA 221 Query: 61 LAKIAEIKAKFGL 73 L ++AEI+ KF L Sbjct: 222 LNRLAEIRRKFNL 234 >UniRef50_B6XBD3 Putative uncharacterized protein n=3 Tax=Providencia alcalifaciens DSM 30120 RepID=B6XBD3_9ENTR Length = 228 Score = 105 bits (261), Expect = 6e-22, Method: Composition-based stats. Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 1/75 (1%) Query: 1 MVTNLYQNMRANALADAELRRKAADELTCMTARINRGETIPEPVKQLPVMGGRPLNRAQA 60 MVT +Y MR L+D+E+R+ + EL M RI GE IPEPV Q+ P ++ ++ Sbjct: 152 MVTKIYTEMRNRNLSDSEVRKLCSSELKTMANRIKSGEKIPEPV-QMIEQKHIPTSKEKS 210 Query: 61 LAKIAEIKAKFGLKG 75 L +A I+ + LK Sbjct: 211 LHNLAAIRERLNLKS 225 >UniRef50_A1JR53 DNA replication protein n=2 Tax=Enterobacteriaceae RepID=A1JR53_YERE8 Length = 231 Score = 103 bits (258), Expect = 1e-21, Method: Composition-based stats. Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 1/77 (1%) Query: 1 MVTNLYQNMRANALADAELRRKAADELTCMTARINRGETIPEPVKQLPVMGGRPLNRAQA 60 MVT LY R L++ +LR++ ELT M+ R GE IP PV Q+P + P++ + Sbjct: 156 MVTKLYSQQRVQGLSEQDLRKRCGKELTDMSKRFEAGEPIPAPVVQIPKL-HIPVSNERG 214 Query: 61 LAKIAEIKAKFGLKGAS 77 L IAE++AK + S Sbjct: 215 LDHIAELRAKLNMTRKS 231 >UniRef50_A7MGK9 Putative uncharacterized protein n=1 Tax=Cronobacter sakazakii ATCC BAA-894 RepID=A7MGK9_ENTS8 Length = 248 Score = 102 bits (254), Expect = 4e-21, Method: Composition-based stats. Identities = 32/74 (43%), Positives = 44/74 (59%), Gaps = 1/74 (1%) Query: 1 MVTNLYQNMRANALADAELRRKAADELTCMTARINRGETIPEPVKQL-PVMGGRPLNRAQ 59 MVT LY MR ++ EL +A E+ M RI GE IP+P + G+PL+R + Sbjct: 162 MVTALYNGMRTYCWSETELANQAGYEIKKMANRIKSGEKIPKPRTLIRSNTSGKPLSREE 221 Query: 60 ALAKIAEIKAKFGL 73 LAK+AE++ KFGL Sbjct: 222 GLAKLAELRVKFGL 235 >UniRef50_Q2NTS1 Phage replication protein n=1 Tax=Sodalis glossinidius str. 'morsitans' RepID=Q2NTS1_SODGM Length = 215 Score = 71.2 bits (173), Expect = 9e-12, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 31/52 (59%) Query: 1 MVTNLYQNMRANALADAELRRKAADELTCMTARINRGETIPEPVKQLPVMGG 52 +VT+L+ MR L D E+R+K+ L+ M R+ RG+ IP PVK++ Sbjct: 141 LVTDLFDAMRRYRLTDEEVRKKSEPLLSKMENRLGRGDVIPAPVKRIAPPRH 192 >UniRef50_D0UIL4 Possible bacteriophage replication protein P n=1 Tax=Aggregatibacter phage S1249 RepID=D0UIL4_9CAUD Length = 224 Score = 68.9 bits (167), Expect = 5e-11, Method: Composition-based stats. Identities = 23/74 (31%), Positives = 35/74 (47%) Query: 1 MVTNLYQNMRANALADAELRRKAADELTCMTARINRGETIPEPVKQLPVMGGRPLNRAQA 60 ++T+L R + AE R++ L M RI GE IP +QLP P + + Sbjct: 150 LLTDLCSRGRRDQWTPAEFRKECEQALKAMAKRIESGEAIPARRRQLPAQTTVPTSPEKT 209 Query: 61 LAKIAEIKAKFGLK 74 IA++K G+K Sbjct: 210 AENIAKLKQILGMK 223 >UniRef50_B3H0W7 Replication protein P n=1 Tax=Actinobacillus pleuropneumoniae serovar 7 str. AP76 RepID=B3H0W7_ACTP7 Length = 218 Score = 61.6 bits (148), Expect = 7e-09, Method: Composition-based stats. Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 1/75 (1%) Query: 1 MVTNLYQNMRANALADAELRRKAADELTCMTARINRGETIPEPVKQLPVMGGRPLNRAQA 60 ++T+LY ++ D LR +A L M RI GETIP P LP + Sbjct: 143 LLTDLYDRNCQHSWKDETLRNQAEKVLIAMAKRIQSGETIPAPAITLPKKSECYVPPEDV 202 Query: 61 L-AKIAEIKAKFGLK 74 + + AE+KAK G+K Sbjct: 203 ISNRFAELKAKMGIK 217 >UniRef50_A7JUB9 Possible bacteriophage replication protein n=1 Tax=Mannheimia haemolytica PHL213 RepID=A7JUB9_PASHA Length = 211 Score = 52.0 bits (123), Expect = 6e-06, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 28/56 (50%) Query: 1 MVTNLYQNMRANALADAELRRKAADELTCMTARINRGETIPEPVKQLPVMGGRPLN 56 ++T+LY+ R ++ D LR +A L M RI GE IP P + P++ Sbjct: 139 LLTDLYERNRKHSWKDETLRNQAEKALVEMAKRIMSGEQIPPPKPVIEEKKKVPID 194 >UniRef50_A6VNN4 Replication P family protein n=1 Tax=Actinobacillus succinogenes 130Z RepID=A6VNN4_ACTSZ Length = 218 Score = 51.2 bits (121), Expect = 1e-05, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 36/69 (52%) Query: 1 MVTNLYQNMRANALADAELRRKAADELTCMTARINRGETIPEPVKQLPVMGGRPLNRAQA 60 ++T++Y+ + N D + + L R++ GE+IPE +Q+P + +A Sbjct: 137 LITDVYRKCKVNRWNDKQFDAGVKETLDAWAGRLSSGESIPERRRQIPKTVKIKVTDEKA 196 Query: 61 LAKIAEIKA 69 + +A++++ Sbjct: 197 MDYLAKMRS 205 >UniRef50_UPI0001BCFAA6 putative bacteriophage replication protein n=1 Tax=Mannheimia haemolytica serotype A2 str. BOVINE RepID=UPI0001BCFAA6 Length = 227 Score = 50.4 bits (119), Expect = 2e-05, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 26/56 (46%) Query: 1 MVTNLYQNMRANALADAELRRKAADELTCMTARINRGETIPEPVKQLPVMGGRPLN 56 ++T+LY + + D LR +A L M RI GE IP P + PL+ Sbjct: 155 LITDLYARNKKYSWKDETLRNQAEKALVAMAKRIMSGEQIPPPKPVIEEKRKPPLD 210 >UniRef50_D2U1J2 Phage replication protein n=1 Tax=Arsenophonus nasoniae RepID=D2U1J2_9ENTR Length = 193 Score = 47.7 bits (112), Expect = 1e-04, Method: Composition-based stats. Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 1/74 (1%) Query: 1 MVTNLYQNMRANALADAELRRKAADELTCMTARINRGETIPEPVKQLP-VMGGRPLNRAQ 59 +V LY+ M A +L ++ +A + +T ++ G IP+P LP P +++ Sbjct: 108 LVHELYRAMIAESLNARQVEDRARLLIDGLTKKLRTGYVIPKPQLSLPQKTCMNPTSQSV 167 Query: 60 ALAKIAEIKAKFGL 73 AL KI+ IKAKFG Sbjct: 168 ALEKISAIKAKFGF 181 >UniRef50_B8F4F9 Possible bacteriophage replication protein P n=3 Tax=Haemophilus parasuis RepID=B8F4F9_HAEPS Length = 223 Score = 47.7 bits (112), Expect = 1e-04, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 26/49 (53%) Query: 1 MVTNLYQNMRANALADAELRRKAADELTCMTARINRGETIPEPVKQLPV 49 ++T LY RA +D +L+ + L M+ R+ GE +PEP LP Sbjct: 151 LITGLYVRNRAGEWSDKQLKDEIKKSLVKMSKRLKTGEVLPEPKLALPQ 199 >UniRef50_B6XEW9 Putative uncharacterized protein n=2 Tax=Providencia RepID=B6XEW9_9ENTR Length = 157 Score = 41.2 bits (95), Expect = 0.011, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 32/68 (47%) Query: 1 MVTNLYQNMRANALADAELRRKAADELTCMTARINRGETIPEPVKQLPVMGGRPLNRAQA 60 M T+L M + L D E R+ A L T R+++GE IP+P ++ P + Sbjct: 89 MFTDLRAQMLEHRLTDIECERRLAKMLAKWTERVHKGEVIPKPTLKVEDKTRPPPAWMEL 148 Query: 61 LAKIAEIK 68 L K + + Sbjct: 149 LEKSKQRR 156 >UniRef50_C5B899 DNA replication protein n=1 Tax=Edwardsiella ictaluri 93-146 RepID=C5B899_EDWI9 Length = 244 Score = 40.4 bits (93), Expect = 0.015, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 12/87 (13%) Query: 1 MVTNLYQNMRANALADAELRRKAADELTCMTARINRGETIPEPVKQL-----PVMGGRPL 55 +V ++ Q M +AE+ R ++ + G+ IP+PV ++ P Sbjct: 155 VVLDVRQLMYRYNYTEAEVLRAIKAQMKQWAKEMAAGKVIPQPVARIADCRRPKTAAELA 214 Query: 56 NRAQ-----ALAKIAEIKAKFGLKGAS 77 A+ +A +A I+ K L+G+S Sbjct: 215 GNAEHYQSVGVAALAAIRQK--LRGSS 239 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P03689 Replication protein P n=81 Tax=root RepID=VRPP_L... 112 3e-24 UniRef50_Q5V9L0 Replication protein P (Fragment) n=1 Tax=Klebsie... 108 6e-23 UniRef50_C7BH50 Phage replication protein p n=2 Tax=Photorhabdus... 104 9e-22 UniRef50_A1JR53 DNA replication protein n=2 Tax=Enterobacteriace... 102 4e-21 UniRef50_B3H0W7 Replication protein P n=1 Tax=Actinobacillus ple... 100 2e-20 UniRef50_D0UIL4 Possible bacteriophage replication protein P n=1... 100 2e-20 UniRef50_B6XBD3 Putative uncharacterized protein n=3 Tax=Provide... 99 4e-20 UniRef50_A7MGK9 Putative uncharacterized protein n=1 Tax=Cronoba... 96 4e-19 UniRef50_A6VNN4 Replication P family protein n=1 Tax=Actinobacil... 93 3e-18 UniRef50_D2U1J2 Phage replication protein n=1 Tax=Arsenophonus n... 91 2e-17 UniRef50_A7JUB9 Possible bacteriophage replication protein n=1 T... 81 1e-14 UniRef50_UPI0001BCFAA6 putative bacteriophage replication protei... 81 1e-14 UniRef50_Q2NTS1 Phage replication protein n=1 Tax=Sodalis glossi... 73 3e-12 UniRef50_B8F4F9 Possible bacteriophage replication protein P n=3... 70 1e-11 Sequences not found previously or not previously below threshold: UniRef50_B6XEW9 Putative uncharacterized protein n=2 Tax=Provide... 50 3e-05 UniRef50_C5B899 DNA replication protein n=1 Tax=Edwardsiella ict... 44 0.001 UniRef50_B7NQU1 Putative replication protein P of bacteriophage ... 44 0.002 UniRef50_B0USW8 Replication P family protein n=2 Tax=Histophilus... 42 0.008 UniRef50_B5XSL8 Conserved domain protein n=12 Tax=Enterobacteria... 40 0.026 >UniRef50_P03689 Replication protein P n=81 Tax=root RepID=VRPP_LAMBD Length = 233 Score = 112 bits (281), Expect = 3e-24, Method: Composition-based stats. Identities = 73/78 (93%), Positives = 74/78 (94%) Query: 1 MVTNLYQNMRANALADAELRRKAADELTCMTARINRGETIPEPVKQLPVMGGRPLNRAQA 60 +VTNLYQNMRANAL DAELRRKAADEL MTARINRGE IPEPVKQLPVMGGRPLNRAQA Sbjct: 156 LVTNLYQNMRANALTDAELRRKAADELVHMTARINRGEAIPEPVKQLPVMGGRPLNRAQA 215 Query: 61 LAKIAEIKAKFGLKGASV 78 LAKIAEIKAKFGLKGASV Sbjct: 216 LAKIAEIKAKFGLKGASV 233 >UniRef50_Q5V9L0 Replication protein P (Fragment) n=1 Tax=Klebsiella pneumoniae RepID=Q5V9L0_KLEPN Length = 157 Score = 108 bits (270), Expect = 6e-23, Method: Composition-based stats. Identities = 50/75 (66%), Positives = 60/75 (80%) Query: 1 MVTNLYQNMRANALADAELRRKAADELTCMTARINRGETIPEPVKQLPVMGGRPLNRAQA 60 +VT LY +MRANAL+D+ELRRKA+DEL M R+N GE IPEPVKQ+P +GGRPL+ Q Sbjct: 78 LVTGLYTDMRANALSDSELRRKASDELLRMVRRMNAGEVIPEPVKQIPKLGGRPLSNEQG 137 Query: 61 LAKIAEIKAKFGLKG 75 L KIAEI+AKFGL Sbjct: 138 LNKIAEIRAKFGLGR 152 >UniRef50_C7BH50 Phage replication protein p n=2 Tax=Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949 RepID=C7BH50_PHOAA Length = 239 Score = 104 bits (259), Expect = 9e-22, Method: Composition-based stats. Identities = 32/76 (42%), Positives = 48/76 (63%), Gaps = 1/76 (1%) Query: 1 MVTNLYQNMRANALADAELRRKAADELTCMTARINRGETIPEPVKQLPVMGGRPLNRAQA 60 +VT LY MR L ++ELR++ + EL M+ R+ GE IP PVKQ+P + P++ +A Sbjct: 163 IVTKLYSQMRGLNLTESELRKRCSQELISMSRRMESGEQIPAPVKQIPKL-HIPVSNERA 221 Query: 61 LAKIAEIKAKFGLKGA 76 L ++AEI+ KF L Sbjct: 222 LNRLAEIRRKFNLHKK 237 >UniRef50_A1JR53 DNA replication protein n=2 Tax=Enterobacteriaceae RepID=A1JR53_YERE8 Length = 231 Score = 102 bits (254), Expect = 4e-21, Method: Composition-based stats. Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 1/77 (1%) Query: 1 MVTNLYQNMRANALADAELRRKAADELTCMTARINRGETIPEPVKQLPVMGGRPLNRAQA 60 MVT LY R L++ +LR++ ELT M+ R GE IP PV Q+P + P++ + Sbjct: 156 MVTKLYSQQRVQGLSEQDLRKRCGKELTDMSKRFEAGEPIPAPVVQIPKL-HIPVSNERG 214 Query: 61 LAKIAEIKAKFGLKGAS 77 L IAE++AK + S Sbjct: 215 LDHIAELRAKLNMTRKS 231 >UniRef50_B3H0W7 Replication protein P n=1 Tax=Actinobacillus pleuropneumoniae serovar 7 str. AP76 RepID=B3H0W7_ACTP7 Length = 218 Score = 100 bits (248), Expect = 2e-20, Method: Composition-based stats. Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 1/75 (1%) Query: 1 MVTNLYQNMRANALADAELRRKAADELTCMTARINRGETIPEPVKQLPVMGGRPLNRAQA 60 ++T+LY ++ D LR +A L M RI GETIP P LP + Sbjct: 143 LLTDLYDRNCQHSWKDETLRNQAEKVLIAMAKRIQSGETIPAPAITLPKKSECYVPPEDV 202 Query: 61 L-AKIAEIKAKFGLK 74 + + AE+KAK G+K Sbjct: 203 ISNRFAELKAKMGIK 217 >UniRef50_D0UIL4 Possible bacteriophage replication protein P n=1 Tax=Aggregatibacter phage S1249 RepID=D0UIL4_9CAUD Length = 224 Score = 100 bits (248), Expect = 2e-20, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 35/75 (46%) Query: 1 MVTNLYQNMRANALADAELRRKAADELTCMTARINRGETIPEPVKQLPVMGGRPLNRAQA 60 ++T+L R + AE R++ L M RI GE IP +QLP P + + Sbjct: 150 LLTDLCSRGRRDQWTPAEFRKECEQALKAMAKRIESGEAIPARRRQLPAQTTVPTSPEKT 209 Query: 61 LAKIAEIKAKFGLKG 75 IA++K G+K Sbjct: 210 AENIAKLKQILGMKK 224 >UniRef50_B6XBD3 Putative uncharacterized protein n=3 Tax=Providencia alcalifaciens DSM 30120 RepID=B6XBD3_9ENTR Length = 228 Score = 99.4 bits (246), Expect = 4e-20, Method: Composition-based stats. Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 1/76 (1%) Query: 1 MVTNLYQNMRANALADAELRRKAADELTCMTARINRGETIPEPVKQLPVMGGRPLNRAQA 60 MVT +Y MR L+D+E+R+ + EL M RI GE IPEPV Q+ P ++ ++ Sbjct: 152 MVTKIYTEMRNRNLSDSEVRKLCSSELKTMANRIKSGEKIPEPV-QMIEQKHIPTSKEKS 210 Query: 61 LAKIAEIKAKFGLKGA 76 L +A I+ + LK Sbjct: 211 LHNLAAIRERLNLKSR 226 >UniRef50_A7MGK9 Putative uncharacterized protein n=1 Tax=Cronobacter sakazakii ATCC BAA-894 RepID=A7MGK9_ENTS8 Length = 248 Score = 95.9 bits (237), Expect = 4e-19, Method: Composition-based stats. Identities = 32/74 (43%), Positives = 44/74 (59%), Gaps = 1/74 (1%) Query: 1 MVTNLYQNMRANALADAELRRKAADELTCMTARINRGETIPEPVKQL-PVMGGRPLNRAQ 59 MVT LY MR ++ EL +A E+ M RI GE IP+P + G+PL+R + Sbjct: 162 MVTALYNGMRTYCWSETELANQAGYEIKKMANRIKSGEKIPKPRTLIRSNTSGKPLSREE 221 Query: 60 ALAKIAEIKAKFGL 73 LAK+AE++ KFGL Sbjct: 222 GLAKLAELRVKFGL 235 >UniRef50_A6VNN4 Replication P family protein n=1 Tax=Actinobacillus succinogenes 130Z RepID=A6VNN4_ACTSZ Length = 218 Score = 92.8 bits (229), Expect = 3e-18, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 36/71 (50%) Query: 1 MVTNLYQNMRANALADAELRRKAADELTCMTARINRGETIPEPVKQLPVMGGRPLNRAQA 60 ++T++Y+ + N D + + L R++ GE+IPE +Q+P + +A Sbjct: 137 LITDVYRKCKVNRWNDKQFDAGVKETLDAWAGRLSSGESIPERRRQIPKTVKIKVTDEKA 196 Query: 61 LAKIAEIKAKF 71 + +A++++ Sbjct: 197 MDYLAKMRSIL 207 >UniRef50_D2U1J2 Phage replication protein n=1 Tax=Arsenophonus nasoniae RepID=D2U1J2_9ENTR Length = 193 Score = 90.5 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 1/74 (1%) Query: 1 MVTNLYQNMRANALADAELRRKAADELTCMTARINRGETIPEPVKQLP-VMGGRPLNRAQ 59 +V LY+ M A +L ++ +A + +T ++ G IP+P LP P +++ Sbjct: 108 LVHELYRAMIAESLNARQVEDRARLLIDGLTKKLRTGYVIPKPQLSLPQKTCMNPTSQSV 167 Query: 60 ALAKIAEIKAKFGL 73 AL KI+ IKAKFG Sbjct: 168 ALEKISAIKAKFGF 181 >UniRef50_A7JUB9 Possible bacteriophage replication protein n=1 Tax=Mannheimia haemolytica PHL213 RepID=A7JUB9_PASHA Length = 211 Score = 80.9 bits (198), Expect = 1e-14, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 28/57 (49%) Query: 1 MVTNLYQNMRANALADAELRRKAADELTCMTARINRGETIPEPVKQLPVMGGRPLNR 57 ++T+LY+ R ++ D LR +A L M RI GE IP P + P++ Sbjct: 139 LLTDLYERNRKHSWKDETLRNQAEKALVEMAKRIMSGEQIPPPKPVIEEKKKVPIDP 195 >UniRef50_UPI0001BCFAA6 putative bacteriophage replication protein n=1 Tax=Mannheimia haemolytica serotype A2 str. BOVINE RepID=UPI0001BCFAA6 Length = 227 Score = 80.9 bits (198), Expect = 1e-14, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 26/57 (45%) Query: 1 MVTNLYQNMRANALADAELRRKAADELTCMTARINRGETIPEPVKQLPVMGGRPLNR 57 ++T+LY + + D LR +A L M RI GE IP P + PL+ Sbjct: 155 LITDLYARNKKYSWKDETLRNQAEKALVAMAKRIMSGEQIPPPKPVIEEKRKPPLDP 211 >UniRef50_Q2NTS1 Phage replication protein n=1 Tax=Sodalis glossinidius str. 'morsitans' RepID=Q2NTS1_SODGM Length = 215 Score = 73.2 bits (178), Expect = 3e-12, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 2/60 (3%) Query: 1 MVTNLYQNMRANALADAELRRKAADELTCMTARINRGETIPEPVKQLPVMGGR--PLNRA 58 +VT+L+ MR L D E+R+K+ L+ M R+ RG+ IP PVK++ P Sbjct: 141 LVTDLFDAMRRYRLTDEEVRKKSEPLLSKMENRLGRGDVIPAPVKRIAPPRHPSGPTPAE 200 >UniRef50_B8F4F9 Possible bacteriophage replication protein P n=3 Tax=Haemophilus parasuis RepID=B8F4F9_HAEPS Length = 223 Score = 70.5 bits (171), Expect = 1e-11, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 26/52 (50%) Query: 1 MVTNLYQNMRANALADAELRRKAADELTCMTARINRGETIPEPVKQLPVMGG 52 ++T LY RA +D +L+ + L M+ R+ GE +PEP LP Sbjct: 151 LITGLYVRNRAGEWSDKQLKDEIKKSLVKMSKRLKTGEVLPEPKLALPQEVK 202 >UniRef50_B6XEW9 Putative uncharacterized protein n=2 Tax=Providencia RepID=B6XEW9_9ENTR Length = 157 Score = 49.7 bits (117), Expect = 3e-05, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 32/69 (46%) Query: 1 MVTNLYQNMRANALADAELRRKAADELTCMTARINRGETIPEPVKQLPVMGGRPLNRAQA 60 M T+L M + L D E R+ A L T R+++GE IP+P ++ P + Sbjct: 89 MFTDLRAQMLEHRLTDIECERRLAKMLAKWTERVHKGEVIPKPTLKVEDKTRPPPAWMEL 148 Query: 61 LAKIAEIKA 69 L K + + Sbjct: 149 LEKSKQRRQ 157 >UniRef50_C5B899 DNA replication protein n=1 Tax=Edwardsiella ictaluri 93-146 RepID=C5B899_EDWI9 Length = 244 Score = 44.3 bits (103), Expect = 0.001, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 30/81 (37%), Gaps = 10/81 (12%) Query: 1 MVTNLYQNMRANALADAELRRKAADELTCMTARINRGETIPEPVKQLPVMGGRPLNRA-- 58 +V ++ Q M +AE+ R ++ + G+ IP+PV ++ Sbjct: 155 VVLDVRQLMYRYNYTEAEVLRAIKAQMKQWAKEMAAGKVIPQPVARIADCRRPKTAAELA 214 Query: 59 --------QALAKIAEIKAKF 71 +A +A I+ K Sbjct: 215 GNAEHYQSVGVAALAAIRQKL 235 >UniRef50_B7NQU1 Putative replication protein P of bacteriophage n=4 Tax=Enterobacteriaceae RepID=B7NQU1_ECO7I Length = 264 Score = 43.9 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 3/57 (5%) Query: 1 MVTNLYQNMRANALADAELRRKAADELTCMTARINRGETIPEPVKQL---PVMGGRP 54 +V + + M L++ E+ + A L ++ G+ IP+PV + P P Sbjct: 161 VVCDTRRAMYQRQLSEIEVEKHACRLLDDWAKKVASGQQIPDPVISIQAKPEPMSTP 217 >UniRef50_B0USW8 Replication P family protein n=2 Tax=Histophilus somni RepID=B0USW8_HAES2 Length = 230 Score = 41.6 bits (96), Expect = 0.008, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 1/79 (1%) Query: 1 MVTNLYQNMRANALADAELRRKAADELTCMTARINRGETIPEPV-KQLPVMGGRPLNRAQ 59 +V L + + L +L KA + M + G + P K+L L + Sbjct: 152 LVCQLKRAIYQENLTHEKLLNKAQSLIKAMAKYLKEGGQLAAPKAKKLTAPKEPNLTPDE 211 Query: 60 ALAKIAEIKAKFGLKGASV 78 AE++ + +V Sbjct: 212 CTKYFAELRKQMRGMTKTV 230 >UniRef50_B5XSL8 Conserved domain protein n=12 Tax=Enterobacteriaceae RepID=B5XSL8_KLEP3 Length = 154 Score = 40.0 bits (92), Expect = 0.026, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 6/71 (8%) Query: 5 LYQNMRA----NALADAELRRKAADELTCMTARINRGETIPEPVKQLPVMGGR--PLNRA 58 + MR L + EL++ A + LT + ++ G +IP +QL P Sbjct: 79 ICIEMRRTGVERNLTEGELKKLAENLLTKWSKHLDNGFSIPPIRRQLAAPRHAAGPTPAQ 138 Query: 59 QALAKIAEIKA 69 + + KA Sbjct: 139 ILMEEYKRRKA 149 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.302 0.134 0.341 Lambda K H 0.267 0.0417 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 387,458,940 Number of Sequences: 3077464 Number of extensions: 11734400 Number of successful extensions: 43175 Number of sequences better than 1.0e-01: 19 Number of HSP's better than 0.1 without gapping: 39 Number of HSP's successfully gapped in prelim test: 6 Number of HSP's that attempted gapping in prelim test: 43121 Number of HSP's gapped (non-prelim): 45 length of query: 78 length of database: 1,040,396,356 effective HSP length: 49 effective length of query: 29 effective length of database: 889,600,620 effective search space: 25798417980 effective search space used: 25798417980 T: 11 A: 40 X1: 16 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.8 bits) S2: 87 (38.1 bits)