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Jump to SCOP summary stats for T0110...

Top superfamilies by number of methods finding them in first 20 hits found

Top families by number of methods finding them in first 20 hits found

Top superfamilies by sum(1/ranks) in first 20 hits found

Top families by sum(1/ranks) in first 20 hits found

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SCOP-ified results from servers

pdg

phd

seq

123d

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
d1fsz_2 1.004.064.002 Tubulin, C-terminal domain
d1b0aa2 1.003.053.001 Aminoacid dehydrogenase-like, N-terminal domain
d1egaa2 1.004.044.003 GTPase Era C-terminal domain
d1kte__ 1.003.042.001 Thioredoxin-like
d1cqxa1 1.001.001.001 Globin-like
d2pvba_ 1.001.041.001 EF-hand
d1ffh_1 1.001.030.001 Domain of the SRP/SRP receptor G-proteins
d2reb_2 1.004.040.001 RecA protein, C-terminal domain
d1br0a_ 1.001.007.002 Syntaxin 1-A N-terminal domain
d1dd5a_ 1.004.054.003 Ribosome recycling factor, RRF
d1opd__ 1.004.078.001 Histidine-containing phosphocarrier proteins (HPr)
d1ptf__ 1.004.078.001 Histidine-containing phosphocarrier proteins (HPr)
d5pal__ 1.001.041.001 EF-hand
d1a26_1 1.001.043.001 Domain of poly(ADP-ribose) polymerase
d1rro__ 1.001.041.001 EF-hand
d1aoa_2 1.001.042.001 Calponin-homology domain, CH-domain
d1abv__ 1.001.070.001 N-terminal domain of the delta subunit of the F1F0-ATP synthase
d1a77_1 1.001.060.003 5' to 3' exonuclease, C-terminal subdomain
d1qc7a_ 1.001.078.001 FliG C-terminal domain
d1bcfa_ 1.001.026.001 Ferritin-like

fams

ffas

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
3its_ unknown  
8catB 1.005.005.001 Heme-linked catalases
2c17A unknown  
1fiy_ 1.003.001.011 Phosphoenolpyruvate/pyruvate domain
1tvt_ 1.010.040.001 Transactivation protein TAT (TAT EIAVY)
2if1_ 1.004.051.001 eIF1-like
1uxd_ 1.001.036.001 lambda repressor-like DNA-binding domains
6gsyB 1.001.047.001 1.003.042.001  
1eupA unknown  
3gtuB 1.001.047.001 1.003.042.001  
1hgxB 1.003.056.001 Phosphoribosyltransferases (PRTases)
6paxA 1.001.004.001 Homeodomain-like
1bu7B 1.001.099.001 Cytochrome P450
1pbxA 1.001.001.001 Globin-like
1bwvY 1.004.058.001 RuBisCO, small subunit
1scc_ unknown  
1dgi1 1.009.005.001 Virus-receptor complexes
1byeD 1.001.047.001 1.003.042.001  
1d3e1 1.009.005.001 Virus-receptor complexes
4gtuH 1.001.047.001 1.003.042.001  

rpfold

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
3UBP 1.002.080.002 1.002.086.001 1.003.001.008 1.004.007.001  
1WWW 1.002.001.001 1.007.017.001  
1I16 1.002.034.001 PDZ domain-like
1UBP 1.002.080.002 1.002.086.001 1.003.001.008 1.004.007.001  
1ADW 1.002.005.001 Cupredoxins

pmap

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
1QQW 1.005.005.001 Heme-linked catalases
8CAT 1.005.005.001 Heme-linked catalases
1YSA 1.008.001.003 Leucine zipper domain
1DGC 1.008.001.003 Leucine zipper domain

prof

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
13CIj unknown  

pssp

jpred2

prof2

nanoworld

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
83f68 unknown  
30B339 unknown  
7bit unknown  

foresst

pdbblast

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
1qqw_C 1.005.005.001 Heme-linked catalases
1qqw_A 1.005.005.001 Heme-linked catalases
3bta_A 1.002.028.001 1.002.040.004 1.004.076.001 1.008.003.002  
1sei_B 1.004.119.001 Ribosomal protein S8
1sei_A 1.004.119.001 Ribosomal protein S8
1qax_B 1.004.048.019 1.004.156.001  
1qay_A 1.004.048.019 1.004.156.001  

sdsc1

sspro

sspsi

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
d1ah6__ 1.004.101.001 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
d1hkba3 1.003.050.001 Actin-like ATPase domain
d1aipc_ 1.004.037.001 Elongation factor Ts (EF-Ts), dimerisation domain
d1ipha1 1.003.016.001 Catalase, C-terminal domain
d1gtpa_ 1.004.080.001 Tetrahydrobiopterin biosynthesis enzymes-like
d1foka4 1.003.047.001 Restriction endonuclease-like
d2ldx_2 1.004.140.001 Lactate & malate dehydrogenases, C-terminal domain
d1ahja_ 1.004.128.001 Nitrile hydratase alpha chain
d1gupa2 1.004.011.001 HIT-like
d1atla_ 1.004.076.001 Metalloproteases ("zincins"), catalytic domain

pred2ary

sausage

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
1tsg_ 1.004.147.001 C-type lectin-like
1bvlC 1.002.001.001 Immunoglobulin
3fx2_ 1.003.016.004 Flavoproteins
1tuiC 1.002.041.003 1.002.042.001 1.003.031.001  
1whi_ 1.002.037.001 Ribosomal protein L14
1thv_ 1.002.024.001 Osmotin, thaumatin-like protein
1ryp1 1.004.132.001 N-terminal nucleophile aminohydrolases (Ntn hydrolases)
1dioB 1.003.046.002 Diol dehydratase, beta subunit
1dun_ 1.002.080.003 Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase)
1rcb_ 1.001.027.001 4-helical cytokines
1tuiB 1.002.041.003 1.002.042.001 1.003.031.001  
1kb5A 1.002.001.001 Immunoglobulin
1mrp_ 1.003.089.001 Periplasmic binding protein-like II
3pvaA 1.004.132.001 N-terminal nucleophile aminohydrolases (Ntn hydrolases)
1ao7D 1.002.001.001 Immunoglobulin
1b66A 1.004.080.001 Tetrahydrobiopterin biosynthesis enzymes-like
1agrE 1.001.087.001 Regulator of G-protein signalling, RGS
6paxA 1.001.004.001 Homeodomain-like
1ubpB 1.002.080.002 Urease, beta-subunit
1aac_ 1.002.005.001 Cupredoxins

fugue

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
13Bz5 unknown  
d1bs2a3 1.004.054.002 Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
d1rcb 1.001.027.001 4-helical cytokines
d1pea 1.003.088.001 Periplasmic binding protein-like I
d1ndoa2 1.004.108.003 Bet v1-like
d1guqa2 1.004.011.001 HIT-like
d1dik_3 1.004.121.001 Glutathione synthetase ATP-binding domain-like
1bs2_A 1.001.028.001 1.003.019.001 1.004.054.002  
1dun 1.002.080.003 Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase)
1duta 1.002.080.003 Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase)
1dupa 1.002.080.003 Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase)
1toh 1.004.155.001 Aromatic aminoacid monoxygenases, catalytic and oligomerization domains
4pah 1.004.155.001 Aromatic aminoacid monoxygenases, catalytic and oligomerization domains
1rcb 1.001.027.001 4-helical cytokines
1pea 1.003.088.001 Periplasmic binding protein-like I
1e2ca unknown  
2aak 1.004.018.001 Ubiquitin conjugating enzyme
2uce unknown  
2ucz 1.004.018.001 Ubiquitin conjugating enzyme
1ayza 1.004.018.001 Ubiquitin conjugating enzyme

target99

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
1hra 1.007.037.001 Glucocorticoid receptor-like (DNA-binding domain)

jigsaw

inbgu

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
1grl_1 unknown  
1bnka 1.002.043.001 FMT C-terminal domain-like
1xra_1 unknown  
1def 1.004.145.001 Peptide deformylase
1cw0a 1.003.047.001 Restriction endonuclease-like
1llda_ 1.003.002.001 1.004.140.001  
1bo9 1.001.065.001 Annexin
1e2ca unknown  
2dln_1 unknown  
1b34a 1.002.036.001 Sm motif of small nuclear ribonucleoproteins, SNRNP
1mek 1.003.042.001 Thioredoxin-like
1otga 1.004.065.001 Tautomerase/MIF
1hus 1.001.073.001 Ribosomal protein S7
1dcha 1.004.059.001 Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH)
1a6f 1.004.012.001 Ribosomal protein S5 domain 2-like
1b4aa 1.001.004.004 1.004.059.002  
1tocr 1.007.008.001 BPTI-like
1lea 1.001.004.004 "Winged helix" DNA-binding domain
1qhgd unknown  

psipred

isites2

threadwithseq

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
1lci 1.005.020.001 Firefly luciferase-like
1pda 1.003.089.001 1.004.042.002  
1srrA 1.003.016.002 CheY-like
1bcfA 1.001.026.001 Ferritin-like
1gpmA 1.003.019.002 1.003.063.001 1.004.044.002  
1xsoB 1.002.001.008 Cu,Zn superoxide dismutase-like
1av4 1.002.029.002 1.004.015.002  
1ctt 1.003.092.001 Cytidine deaminase

genthreader

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
1bxyA 1.004.048.015 Ribosomal protein L30
1adjA 1.003.046.001 1.004.087.001  
1wjaA 1.001.004.006 N-terminal Zn binding domain of HIV integrase
1bo9A 1.001.065.001 Annexin
1bbl0 1.001.009.001 Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
1a7701 1.001.060.003 1.003.048.001  
1bmtA 1.001.048.001 1.003.016.005  
1dn1A unknown  
1qg8A unknown  
1a8y01 1.003.042.001 Thioredoxin-like

mgenthreader

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
1bxyA 1.004.048.015 Ribosomal protein L30
1adjA 1.003.046.001 1.004.087.001  
1wjaA 1.001.004.006 N-terminal Zn binding domain of HIV integrase
1bo9A 1.001.065.001 Annexin
1xxaA 1.004.059.002 C-terminal domain of arginine repressor
1a1w0 1.001.075.001 DEATH domain
2tct01 1.001.037.001 1.001.114.001  
1bi102 1.001.004.004 1.001.074.001 1.002.032.001  
1hcrA 1.001.004.001 Homeodomain-like
1bmtA 1.001.048.001 1.003.016.005  

3dpssm

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
d1egaa2 1.004.044.003 GTPase Era C-terminal domain
d1oela3 1.004.047.001 GroEL-like chaperone, intermediate domain
d1d0na6 1.004.090.001 Actin depolymerizing proteins
d1dd5a_ 1.004.054.003 Ribosome recycling factor, RRF
d1b34a_ 1.002.036.001 Sm motif of small nuclear ribonucleoproteins, SNRNP
d1qaxa1 1.004.048.019 NAD-binding domain of HMG-CoA reductase
d1otga_ 1.004.065.001 Tautomerase/MIF
d1tola2 1.004.056.001 C-terminal domain of TolA
d1svy__ 1.004.090.001 Actin depolymerizing proteins
d1dlxa_ 1.004.067.002 C-terminal domain of frataxin
d1mxa_1 1.004.109.001 S-adenosylmethionine synthetase. MAT
d1a8y_2 1.003.042.001 Thioredoxin-like
d1a8l_1 1.003.042.001 Thioredoxin-like
d1guqa2 1.004.011.001 HIT-like
d1ax8__ 1.001.027.001 4-helical cytokines
d1cnua_ 1.004.090.001 Actin depolymerizing proteins
d1qsma_ 1.004.089.001 Acyl-CoA N-acyltransferases (Nat)
d5nul__ 1.003.016.004 Flavoproteins
d1qapa2 1.004.035.002 Quinolinic acid phosphoribosyltransferase, N-terminal domain
d1bax__ 1.001.061.001 Retroviral matrix proteins

dillken

loopp

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
1lis 1.001.019.001 Lysin
4rhn 1.004.011.001 HIT-like
1hss_A 1.001.053.001 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
1bbr_H unknown  
1cb2_A 1.003.005.001 Cellulases
1mba 1.001.001.001 Globin-like
1gpr 1.002.079.003 Duplicated hybrid motif
2dln 1.003.025.001 1.004.121.001  
1phr 1.003.039.001 Phosphotyrosine protein phosphatases I
1dps_A 1.001.026.001 Ferritin-like
2acg 1.004.091.001 Profilin (actin-binding protein)
1alc 1.004.002.001 Lysozyme-like
2dtr 1.001.004.004 1.001.074.001 1.002.032.001  
1yua 1.007.039.003 Zinc beta-ribbon
1cfe 1.004.092.001 Pathogenesis-related PR-1 proteins
1ah1 1.002.001.001 Immunoglobulin
1pfx_L 1.007.003.011 1.007.030.001  
5tnc 1.001.041.001 EF-hand
1jsg 1.002.059.001 Oncogene products
1u9aA 1.004.018.001 Ubiquitin conjugating enzyme

cornet

SCOP summary statistics for T0110  

Top superfamilies by number of methods finding them in first 20 hits found  

Superfamily      number of methods    methods
1.003.042.001 5 123d 3dpssm ffas genthreader inbgu
1.004.011.001 4 3dpssm fugue loopp sspsi
1.001.065.001 3 genthreader inbgu mgenthreader
1.001.026.001 3 123d loopp threadwithseq
1.001.004.004 3 inbgu loopp mgenthreader
1.001.001.001 3 123d ffas loopp
1.002.001.001 3 loopp rpfold sausage
1.005.005.001 3 ffas pdbblast pmap
1.001.004.001 3 ffas mgenthreader sausage
1.001.027.001 3 3dpssm fugue sausage
1.004.018.001 2 fugue loopp
1.003.016.004 2 3dpssm sausage
1.003.016.005 2 genthreader mgenthreader
1.001.048.001 2 genthreader mgenthreader
1.001.074.001 2 loopp mgenthreader
1.003.046.001 2 genthreader mgenthreader
1.004.059.002 2 inbgu mgenthreader
1.004.048.015 2 genthreader mgenthreader
1.004.044.003 2 123d 3dpssm
1.004.048.019 2 3dpssm pdbblast

Top families by number of methods finding them in first 20 hits found  

Family                               number of methods    methods
1.001.026.001.001 3 123d loopp threadwithseq
1.005.005.001.001 3 ffas pdbblast pmap
1.001.001.001.001 3 123d ffas loopp
1.004.011.001.002 3 3dpssm fugue sspsi
1.001.065.001.001 3 genthreader inbgu mgenthreader
1.003.089.001.001 2 sausage threadwithseq
1.004.044.003.001 2 123d 3dpssm
1.002.036.001.001 2 3dpssm inbgu
1.001.074.001.001 2 loopp mgenthreader
1.001.027.001.002 2 fugue sausage
1.001.004.001.005 2 ffas sausage
1.003.016.005.001 2 genthreader mgenthreader
1.004.140.001.001 2 inbgu sspsi
1.002.080.002.001 2 rpfold sausage
1.004.054.003.001 2 123d 3dpssm
1.002.001.001.001 2 loopp sausage
1.002.005.001.001 2 rpfold sausage
1.003.042.001.002 2 3dpssm inbgu
1.001.004.006.001 2 genthreader mgenthreader
1.003.042.001.003 2 3dpssm genthreader

Top superfamilies by sum(1/ranks) in first 20 hits found  

Superfamily      sum(1/ranks)    methods
1.005.005.001 4 ffas pdbblast pmap
1.004.048.015 2 genthreader mgenthreader
1.004.044.003 1.3 123d 3dpssm
1.002.080.002 1.3 rpfold sausage
1.002.086.001 1.2 rpfold
1.004.007.001 1.2 rpfold
1.003.001.008 1.2 rpfold
1.002.001.001 1.2 loopp rpfold sausage
1.004.054.002 1.1 fugue
1.003.042.001 1.1 123d 3dpssm ffas genthreader inbgu
1.003.046.001 1 genthreader mgenthreader
1.004.064.002 1 123d
1.004.147.001 1 sausage
1.004.087.001 1 genthreader mgenthreader
1.005.020.001 1 threadwithseq
1.007.037.001 1 target99
1.004.101.001 1 sspsi
1.001.019.001 1 loopp
1.002.043.001 1 inbgu
1.004.011.001 0.88 3dpssm fugue loopp sspsi

Top families by sum(1/ranks) in first 20 hits found  

Family                               sum(1/ranks)    methods
1.005.005.001.001 4 ffas pdbblast pmap
1.004.048.015.001 2 genthreader mgenthreader
1.004.044.003.001 1.3 123d 3dpssm
1.002.080.002.001 1.3 rpfold sausage
1.003.001.008.002 1.2 rpfold
1.004.007.001.001 1.2 rpfold
1.002.086.001.001 1.2 rpfold
1.004.054.002.001 1.1 fugue
1.004.147.001.004 1 sausage
1.004.101.001.001 1 sspsi
1.003.046.001.001 1 genthreader mgenthreader
1.005.020.001.001 1 threadwithseq
1.004.087.001.001 1 genthreader mgenthreader
1.001.019.001.001 1 loopp
1.007.037.001.002 1 target99
1.004.064.002.001 1 123d
1.002.043.001.002 1 inbgu
1.002.001.001.001 0.72 loopp sausage
1.001.065.001.001 0.7 genthreader inbgu mgenthreader
1.001.027.001.002 0.68 fugue sausage
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