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Jump to SCOP summary stats for T0109...

Top superfamilies by number of methods finding them in first 20 hits found

Top families by number of methods finding them in first 20 hits found

Top superfamilies by sum(1/ranks) in first 20 hits found

Top families by sum(1/ranks) in first 20 hits found

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SCOP-ified results from servers

pdg

phd

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
256b_A 1.001.025.003 Cytochromes
2alp 1.002.044.001 Trypsin-like serine proteases
1bds 1.007.009.001 Defensin-like
1cc5 1.001.003.001 Cytochrome c
6cpa 1.003.051.004 Zn-dependent exopeptidases
3dfr 1.003.066.001 Dihydrofolate reductases
1fdl_H 1.002.001.001 Immunoglobulin
2gbp 1.003.088.001 Periplasmic binding protein-like I
1hds_B 1.001.001.001 Globin-like
5hvp_A 1.002.047.001 Acid proteases
2lbp 1.003.088.001 Periplasmic binding protein-like I
1mcp_L 1.002.001.001 Immunoglobulin
1ovo_A 1.007.015.001 Ovomucoid/PCI-1 like inhibitors
2pka_A unknown  
1pyp 1.002.038.005 Inorganic pyrophosphatase
3rnt 1.004.001.001 Microbial ribonucleases
4sgb_I 1.007.015.001 Ovomucoid/PCI-1 like inhibitors
2tgp_I 1.007.008.001 BPTI-like
1ubq 1.004.013.002 Ubiquitin-related
2SPC 1.001.007.001 Spectrin repeat

seq

123d

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
d1a9xa2 1.003.017.001 Methylglyoxal synthase-like
d1mba__ 1.001.001.001 Globin-like
d1b9da_ 1.003.050.003 Ribonuclease H-like
d1qc7a_ 1.001.078.001 FliG C-terminal domain
d1b0b__ 1.001.001.001 Globin-like
d1hjra_ 1.003.050.003 Ribonuclease H-like
d1qf9a_ 1.003.031.001 P-loop containing nucleotide triphosphate hydrolases
d1alla_ 1.001.001.001 Globin-like
d1dpsa_ 1.001.026.001 Ferritin-like
d1kfsa1 1.003.050.003 Ribonuclease H-like
d1b79a_ 1.001.077.001 N-terminal domain of DnaB helicase
d1ecma_ 1.001.121.001 Chorismate mutase II
d1spga_ 1.001.001.001 Globin-like
d2ts1_1 1.001.068.001 Tyrosyl-tRNA synthetase, middle domain
d1zyma1 1.001.060.011 Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain
d1mh1__ 1.003.031.001 P-loop containing nucleotide triphosphate hydrolases
d1cuna1 1.001.007.001 Spectrin repeat
d1qgha_ 1.001.026.001 Ferritin-like
d1ctqa_ 1.003.031.001 P-loop containing nucleotide triphosphate hydrolases
d1vhba_ 1.001.001.001 Globin-like

fams

ffas

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
1d9fA 1.003.050.003 1.005.008.001  
4bdpA 1.003.050.003 1.005.008.001  
1d5aA unknown  
1ewaB unknown  
1ebt_ 1.001.001.001 Globin-like
1e0aA unknown  
1nozB 1.003.050.003 Ribonuclease H-like
1clqA 1.003.050.003 1.005.008.001  
5ktqA 1.003.050.003 1.005.008.001  
1eco_ 1.001.001.001 Globin-like
2lh7_ 1.001.001.001 Globin-like
1ile_ 1.001.028.001 1.002.048.001 1.003.019.001  
1nulB 1.003.056.001 Phosphoribosyltransferases (PRTases)
1cxzA 1.003.031.001 P-loop containing nucleotide triphosphate hydrolases
1ei3F unknown  
1hgxB 1.003.056.001 Phosphoribosyltransferases (PRTases)
1c93A 1.003.001.007 Glycosyltransferases
1rhgC 1.001.027.001 4-helical cytokines
1qb2B 1.001.038.001 Signal peptide-binding domain
2ebn_ 1.003.001.007 Glycosyltransferases

rpfold

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
1TMC 1.002.001.001 1.004.017.001  
153L 1.004.002.001 Lysozyme-like
1GBS 1.004.002.001 Lysozyme-like
1QJZ 1.002.009.001 Viral coat and capsid proteins
1AE9 1.004.141.001 DNA breaking-rejoining enzymes

pmap

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
1QQC 1.003.050.003 1.005.008.001  
1YAS 1.003.064.001 alpha/beta-Hydrolases
1DD5 1.004.054.003 Ribosome recycling factor, RRF
1BXK 1.003.002.001 NAD(P)-binding Rossmann-fold domains
1QDL 1.003.063.001 1.004.139.001  

prof

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
13CIs6 unknown  

pssp

jpred2

prof2

nanoworld

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
8F34A unknown  
7c017 unknown  
1ABC5 unknown  
7bit unknown  

foresst

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
1hni 1.003.050.003 1.005.008.001  
1bco0_ 1.002.045.001 1.003.050.003  
1lav0 1.003.050.003 Ribonuclease H-like
1itg0 1.003.050.003 Ribonuclease H-like
1law0 1.003.050.003 Ribonuclease H-like
3hvtA 1.003.050.003 1.005.008.001  
1rbr0 1.003.050.003 Ribonuclease H-like
1ril0 1.003.050.003 Ribonuclease H-like
1rnh0 1.003.050.003 Ribonuclease H-like
1asu0 1.003.050.003 Ribonuclease H-like
1hniA 1.003.050.003 1.005.008.001  
1vsd0 1.003.050.003 Ribonuclease H-like
1hrhA 1.003.050.003 Ribonuclease H-like
2rn20 1.003.050.003 Ribonuclease H-like
1hjrA 1.003.050.003 Ribonuclease H-like
1goa0 1.003.050.003 Ribonuclease H-like
1rdb0 1.003.050.003 Ribonuclease H-like
1hni_A 1.003.050.003 1.005.008.001  

pdbblast

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
1qqc_A 1.003.050.003 1.005.008.001  
1d5a_A unknown  
1qht_A unknown  
1deq_O 1.009.007.001 Blood clotting
1deq_B 1.009.007.001 Blood clotting
1a0c_B 1.003.001.014 Xylose isomerase-like
1a0c_A 1.003.001.014 Xylose isomerase-like
1c4c_A 1.003.091.001 1.004.013.006 1.004.048.001  
1feh_A 1.003.091.001 1.004.013.006 1.004.048.001  
1c47_B 1.003.078.001 1.004.108.002  
1vkl_A 1.003.078.001 1.004.108.002  
1a0d_D 1.003.001.014 Xylose isomerase-like
1a0d_A 1.003.001.014 Xylose isomerase-like
1ain_ 1.001.065.001 Annexin
1d2m_A unknown  
1tpv_B 1.003.001.001 Triosephosphate isomerase (TIM)
1tpv_A 1.003.001.001 Triosephosphate isomerase (TIM)
1hti_B 1.003.001.001 Triosephosphate isomerase (TIM)
1hti_A 1.003.001.001 Triosephosphate isomerase (TIM)
1fcb_B 1.003.001.004 FMN-linked oxidoreductases

sdsc1

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
2bdSh unknown  

sspro

sspsi

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
d2ebn__ 1.003.001.007 Glycosyltransferases
d1edt__ 1.003.001.007 Glycosyltransferases
d1hdca_ 1.003.002.001 NAD(P)-binding Rossmann-fold domains
d1amp__ 1.003.051.004 Zn-dependent exopeptidases
d1nfp__ 1.003.001.015 Bacterial luciferase-like
d1esc__ 1.003.016.009 Esterase/acetylhydrolase
d1nipa_ 1.003.031.001 P-loop containing nucleotide triphosphate hydrolases
d1edb__ 1.003.064.001 alpha/beta-Hydrolases
d1nsa_1 1.003.051.004 Zn-dependent exopeptidases
d1fvpa_ 1.003.001.015 Bacterial luciferase-like

pred2ary

sausage

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
1drw_ 1.003.002.001 1.004.066.001  
1ryp1 1.004.132.001 N-terminal nucleophile aminohydrolases (Ntn hydrolases)
1dg9A 1.003.039.001 Phosphotyrosine protein phosphatases I
1qq4A 1.002.044.001 Trypsin-like serine proteases
1baq_ 1.001.076.001 Antitermination factor NusB
1a0hE unknown  
1a6jA 1.004.093.001 IIA domain of mannitol-specific and ntr phosphotransherase EII
1aol_ 1.002.019.001 F-MuLV receptor-binding domain
1whi_ 1.002.037.001 Ribosomal protein L14
1rypD 1.004.132.001 N-terminal nucleophile aminohydrolases (Ntn hydrolases)
2prd_ 1.002.038.005 Inorganic pyrophosphatase
1fvkA 1.001.046.001 1.003.042.001  
1gpr_ 1.002.079.003 Duplicated hybrid motif
1bd8_ 1.001.110.002 Ankyrin repeat
1bu2A 1.001.072.001 Cyclin-like
1a0fA 1.001.047.001 1.003.042.001  
1aep_ 1.001.063.001 Apolipophorin-III
1aisB 1.001.072.001 Cyclin-like
1dpsA 1.001.026.001 Ferritin-like
1tfb_ 1.001.072.001 Cyclin-like

fugue

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
13Byu unknown  
d1lxa 1.002.076.001 Trimeric LpxA-like enzymes
d1bh9b 1.001.023.001 Histone-fold
1ddf 1.001.075.001 DEATH domain
1ngr 1.001.075.001 DEATH domain
1ihp 1.003.055.001 Phosphoglycerate mutase-like
2hpaa 1.003.055.001 Phosphoglycerate mutase-like
1rpt 1.003.055.001 Phosphoglycerate mutase-like
1clqa 1.003.050.003 1.005.008.001  
1noza 1.003.050.003 Ribonuclease H-like
1clq_A 1.003.050.003 1.005.008.001  
1qwf_B unknown  
1chka 1.004.002.001 Lysozyme-like
1qgia 1.004.002.001 Lysozyme-like
1chk_A 1.004.002.001 Lysozyme-like
1gai 1.001.097.001 Six-hairpin glycosyltransferases
1ayx 1.001.097.001 Six-hairpin glycosyltransferases
1lxa 1.002.076.001 Trimeric LpxA-like enzymes
3hlaa 1.002.001.001 1.004.017.001  
1hoca 1.002.001.001 1.004.017.001  

target99

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
1pymA 1.003.001.023 Phosphoenolpyruvate mutase
1qqtA 1.001.028.001 1.003.019.001 1.007.039.001  
1qhaA 1.003.050.001 Actin-like ATPase domain
1dgkN unknown  
1qfxA unknown  
1cqxA 1.001.001.001 1.002.041.001 1.003.018.001  
1qj4A 1.003.064.001 alpha/beta-Hydrolases
1yasA 1.003.064.001 alpha/beta-Hydrolases
2yasA 1.003.064.001 alpha/beta-Hydrolases
3yasA 1.003.064.001 alpha/beta-Hydrolases
4yasA 1.003.064.001 alpha/beta-Hydrolases
5yasA 1.003.064.001 alpha/beta-Hydrolases
6yasA 1.003.064.001 alpha/beta-Hydrolases
7yasA 1.003.064.001 alpha/beta-Hydrolases
1cw3A 1.003.076.001 Aldehyde reductase (dehydrogenase), ALDH
1cw3B 1.003.076.001 Aldehyde reductase (dehydrogenase), ALDH
1cw3C 1.003.076.001 Aldehyde reductase (dehydrogenase), ALDH
1cw3D 1.003.076.001 Aldehyde reductase (dehydrogenase), ALDH
1cw3E 1.003.076.001 Aldehyde reductase (dehydrogenase), ALDH
1cw3F 1.003.076.001 Aldehyde reductase (dehydrogenase), ALDH

jigsaw

inbgu

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
1kfd_3 unknown  
1a0b 1.001.025.009 Histidine-containing phosphotransfer domain, HPT domain
1mbc 1.001.001.001 Globin-like
1dpra 1.001.004.004 1.001.074.001  
1qh3a 1.004.136.001 Metallo-hydrolase
1msec 1.001.004.001 Homeodomain-like
4tmk 1.003.031.001 P-loop containing nucleotide triphosphate hydrolases
1gsq 1.001.047.001 1.003.042.001  
1pd21 1.001.047.001 1.003.042.001  
1jwe 1.001.077.001 N-terminal domain of DnaB helicase
1guha 1.001.047.001 1.003.042.001  
1dpsa 1.001.026.001 Ferritin-like
1bhda 1.001.042.001 Calponin-homology domain, CH-domain
1glag_ 1.002.079.003 1.003.050.001  
1au1a 1.001.027.001 4-helical cytokines
1fad 1.001.075.001 DEATH domain
1qhga unknown  
1d2za 1.001.075.001 DEATH domain
1ecd 1.001.001.001 Globin-like
1fcdc_ 1.001.003.001 1.003.003.001 1.004.072.001  

psipred

isites2

threadwithseq

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
3chy 1.003.016.002 CheY-like
1dad 1.003.031.001 P-loop containing nucleotide triphosphate hydrolases
1pdo 1.003.049.001 IIA domain of mannose transporter, IIA-Man
1ldg 1.003.002.001 1.004.140.001  
1qorA 1.002.033.001 1.003.002.001  
1efvA 1.003.023.001 1.003.026.001  
2minB 1.003.081.001 Nitrogenase iron-molybdenum protein, alpha and beta chains
1bmtA 1.001.048.001 1.003.016.005  

genthreader

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
1kfsA 1.003.050.003 1.005.008.001  
1xwl01 1.003.050.003 1.005.008.001  
1dcfA 1.003.016.002 CheY-like
1bm0A 1.001.117.001 Serum albumin
1b00A 1.003.016.002 CheY-like
3chy0 1.003.016.002 CheY-like
1srrA 1.003.016.002 CheY-like
1tmy0 1.003.016.002 CheY-like
1a0p01 1.001.060.009 1.004.141.001  

mgenthreader

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
1kfsA 1.003.050.003 1.005.008.001  
1xwl01 1.003.050.003 1.005.008.001  
1dcfA 1.003.016.002 CheY-like
1bm0A 1.001.117.001 Serum albumin
1b00A 1.003.016.002 CheY-like
3chy0 1.003.016.002 CheY-like
1srrA 1.003.016.002 CheY-like
1tmy0 1.003.016.002 CheY-like
1cjaA 1.004.123.001 Protein kinase-like (PK-like)

3dpssm

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
d1a8l_1 1.003.042.001 Thioredoxin-like
d1rcb__ 1.001.027.001 4-helical cytokines
d1ash__ 1.001.001.001 Globin-like
c1pd21_ 1.001.047.001 1.003.042.001  
d1gsea1 1.001.047.001 Glutathione S-transferases, C-terminal domain
d1pmt_1 1.001.047.001 Glutathione S-transferases, C-terminal domain
c1eboa_ 1.008.002.002 Virus ectodomain
d2spca_ 1.001.007.001 Spectrin repeat
d1pd211 1.001.047.001 Glutathione S-transferases, C-terminal domain
d1cuna1 1.001.007.001 Spectrin repeat
d1cuna2 1.001.007.001 Spectrin repeat
d1fipa_ 1.001.100.001 FIS-like
d1bbha_ 1.001.025.003 Cytochromes
d1aisb1 1.001.072.001 Cyclin-like
d1a0fa1 1.001.047.001 Glutathione S-transferases, C-terminal domain
c1mr8a_ unknown  
d1cgo__ 1.001.025.003 Cytochromes
d6paxa_ 1.001.004.001 Homeodomain-like
d1qqta1 1.001.028.001 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
d1trea_ 1.003.001.001 Triosephosphate isomerase (TIM)

dillken

loopp

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
1ryt 1.001.026.001 1.007.039.004  
1ndo_B 1.004.015.003 NTF2-like
1mek 1.003.042.001 Thioredoxin-like
2bpa_2 1.002.009.001 Viral coat and capsid proteins
1sryA 1.001.002.004 1.004.087.001  
1vid 1.003.061.001 S-adenosyl-L-methionine-dependent methyltransferases
1aos_A 1.001.118.001 L-aspartase-like
1ac5 1.003.064.001 alpha/beta-Hydrolases
1kfd 1.003.050.003 1.005.008.001  
2sga 1.002.044.001 Trypsin-like serine proteases
8dfr 1.003.066.001 Dihydrofolate reductases
1idn_1 1.003.057.001 Integrin A (or I) domain
1lia_B 1.001.001.001 Globin-like
2il6 1.001.027.001 4-helical cytokines
1lfaA 1.003.057.001 Integrin A (or I) domain
1bkj_A 1.004.075.001 NADH oxidase/flavin reductase
1spa 1.003.062.001 PLP-dependent transferases
7aatA 1.003.062.001 PLP-dependent transferases
2gstA 1.001.047.001 1.003.042.001  
3pgm 1.003.055.001 Phosphoglycerate mutase-like

cornet

SCOP summary statistics for T0109  

Top superfamilies by number of methods finding them in first 20 hits found  

Superfamily      number of methods    methods
1.003.050.003 9 123d ffas foresst fugue genthreader loopp mgenthreader pdbblast pmap
1.005.008.001 8 ffas foresst fugue genthreader loopp mgenthreader pdbblast pmap
1.001.001.001 7 123d 3dpssm ffas inbgu loopp phd target99
1.003.031.001 5 123d ffas inbgu sspsi threadwithseq
1.003.042.001 4 3dpssm inbgu loopp sausage
1.001.047.001 4 3dpssm inbgu loopp sausage
1.001.026.001 4 123d inbgu loopp sausage
1.001.027.001 4 3dpssm ffas inbgu loopp
1.003.002.001 4 pmap sausage sspsi threadwithseq
1.003.064.001 4 loopp pmap sspsi target99
1.001.007.001 3 123d 3dpssm phd
1.003.016.002 3 genthreader mgenthreader threadwithseq
1.002.001.001 3 fugue phd rpfold
1.001.028.001 3 3dpssm ffas target99
1.002.044.001 3 loopp phd sausage
1.002.009.001 2 loopp rpfold
1.001.117.001 2 genthreader mgenthreader
1.001.072.001 2 3dpssm sausage
1.003.001.001 2 3dpssm pdbblast
1.001.003.001 2 inbgu phd

Top families by number of methods finding them in first 20 hits found  

Family                               number of methods    methods
1.005.008.001.001 7 ffas fugue genthreader loopp mgenthreader pdbblast pmap
1.001.001.001.001 6 123d 3dpssm ffas inbgu phd target99
1.003.050.003.005 5 123d ffas genthreader loopp mgenthreader
1.003.050.003.006 4 ffas fugue pdbblast pmap
1.001.026.001.001 4 123d inbgu loopp sausage
1.001.047.001.001 4 3dpssm inbgu loopp sausage
1.003.042.001.005 4 3dpssm inbgu loopp sausage
1.001.028.001.001 3 3dpssm ffas target99
1.003.016.002.001 3 genthreader mgenthreader threadwithseq
1.002.044.001.001 3 loopp phd sausage
1.001.007.001.001 3 123d 3dpssm phd
1.004.141.001.001 2 genthreader rpfold
1.001.077.001.001 2 123d inbgu
1.003.019.001.001 2 ffas target99
1.002.038.005.001 2 phd sausage
1.001.027.001.001 2 ffas loopp
1.003.064.001.017 2 pmap target99
1.003.001.001.001 2 3dpssm pdbblast
1.001.001.001.002 2 123d loopp
1.003.031.001.001 2 123d inbgu

Top superfamilies by sum(1/ranks) in first 20 hits found  

Superfamily      sum(1/ranks)    methods
1.003.050.003 12 123d ffas foresst fugue genthreader loopp mgenthreader pdbblast pmap
1.005.008.001 8.5 ffas foresst fugue genthreader loopp mgenthreader pdbblast pmap
1.003.016.002 2.9 genthreader mgenthreader threadwithseq
1.001.001.001 2.9 123d 3dpssm ffas inbgu loopp phd target99
1.003.042.001 2.2 3dpssm inbgu loopp sausage
1.003.002.001 2 pmap sausage sspsi threadwithseq
1.003.064.001 1.8 loopp pmap sspsi target99
1.003.001.007 1.6 ffas sspsi
1.002.001.001 1.3 fugue phd rpfold
1.001.026.001 1.3 123d inbgu loopp sausage
1.001.047.001 1.3 3dpssm inbgu loopp sausage
1.003.031.001 1.2 123d ffas inbgu sspsi threadwithseq
1.001.025.003 1.1 3dpssm phd
1.004.017.001 1.1 fugue rpfold
1.004.002.001 1.1 fugue rpfold
1.002.076.001 1.1 fugue
1.003.001.023 1 target99
1.004.066.001 1 sausage
1.003.017.001 1 123d
1.001.025.009 1 inbgu

Top families by sum(1/ranks) in first 20 hits found  

Family                               sum(1/ranks)    methods
1.005.008.001.001 7.2 ffas fugue genthreader loopp mgenthreader pdbblast pmap
1.003.050.003.005 4.9 123d ffas genthreader loopp mgenthreader
1.003.050.003.006 2.8 ffas fugue pdbblast pmap
1.001.001.001.001 2.7 123d 3dpssm ffas inbgu phd target99
1.003.050.003.001 2.5 foresst
1.003.016.002.001 2.3 genthreader mgenthreader threadwithseq
1.003.001.007.005 1.6 ffas sspsi
1.003.064.001.017 1.5 pmap target99
1.003.042.001.002 1.3 3dpssm loopp
1.001.026.001.001 1.3 123d inbgu loopp sausage
1.005.008.001.002 1.3 foresst
1.001.047.001.001 1.3 3dpssm inbgu loopp sausage
1.004.017.001.001 1.1 fugue rpfold
1.002.001.001.002 1.1 fugue rpfold
1.002.076.001.001 1.1 fugue
1.007.039.004.001 1 loopp
1.003.001.023.001 1 target99
1.004.066.001.002 1 sausage
1.003.017.001.001 1 123d
1.001.025.009.001 1 inbgu
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