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Jump to SCOP summary stats for T0108...

Top superfamilies by number of methods finding them in first 20 hits found

Top families by number of methods finding them in first 20 hits found

Top superfamilies by sum(1/ranks) in first 20 hits found

Top families by sum(1/ranks) in first 20 hits found

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SCOP-ified results from servers

pdg

phd

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
256b_A 1.001.025.003 Cytochromes
2alp 1.002.044.001 Trypsin-like serine proteases
1bds 1.007.009.001 Defensin-like
1cc5 1.001.003.001 Cytochrome c
6cpa 1.003.051.004 Zn-dependent exopeptidases
3dfr 1.003.066.001 Dihydrofolate reductases
1fdl_H 1.002.001.001 Immunoglobulin
2gbp 1.003.088.001 Periplasmic binding protein-like I
1hds_B 1.001.001.001 Globin-like
5hvp_A 1.002.047.001 Acid proteases
2lbp 1.003.088.001 Periplasmic binding protein-like I
1mcp_L 1.002.001.001 Immunoglobulin
1ovo_A 1.007.015.001 Ovomucoid/PCI-1 like inhibitors
2pka_A unknown  
1pyp 1.002.038.005 Inorganic pyrophosphatase
3rnt 1.004.001.001 Microbial ribonucleases
4sgb_I 1.007.015.001 Ovomucoid/PCI-1 like inhibitors
2tgp_I 1.007.008.001 BPTI-like
1ubq 1.004.013.002 Ubiquitin-related
1SRD 1.002.001.008 Cu,Zn superoxide dismutase-like

seq

123d

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
d1aoza1 1.002.005.001 Cupredoxins
d1ulo__ 1.002.017.001 Galactose-binding domain-like
d1dlpa_ 1.002.073.001 alpha-D-mannose-specific plant lectins
d1whi__ 1.002.037.001 Ribosomal protein L14
d1qhva_ 1.002.020.001 Adenovirus fiber protein head domain (knob domain)
d1dssg1 1.003.002.001 NAD(P)-binding Rossmann-fold domains
d1a65a1 1.002.005.001 Cupredoxins
d1ciy_1 1.002.017.001 Galactose-binding domain-like
d1bdfa2 1.004.158.001 Insert subdomain of RNA polymerase alpha subunit N-terminal domain
d1pkya1 1.002.055.001 Pyruvate kinase beta-barrel domain
d1eso__ 1.002.001.008 Cu,Zn superoxide dismutase-like
d3btaa1 1.002.028.001 ConA-like lectins/glucanases
d1eut_2 1.002.017.001 Galactose-binding domain-like
d1d9ba1 1.003.090.001 Thiolase-like
d2pola1 1.004.110.001 DNA clamp
d1rypk_ 1.004.132.001 N-terminal nucleophile aminohydrolases (Ntn hydrolases)
d1soxa1 1.002.001.001 Immunoglobulin
d1biha1 1.002.001.001 Immunoglobulin
d1nif_1 1.002.005.001 Cupredoxins
d2ltn 1.002.028.001 ConA-like lectins/glucanases

fams

ffas

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
2ayh_ 1.002.028.001 ConA-like lectins/glucanases
1b3rD 1.003.002.001 1.003.016.011  
1xnc_ 1.002.028.001 ConA-like lectins/glucanases
3ezmA 1.002.083.001 Cyanovirin-N
1cfmA 1.002.002.006 1.002.079.002  
1unaB 1.004.070.001 RNA bacteriophage capsid protein
1qfhA 1.002.001.001 Immunoglobulin
1ci3M 1.002.002.006 1.002.079.002  
1avpA 1.004.003.001 Cysteine proteinases
1qtqA 1.002.050.001 1.003.019.001  
1boqA 1.002.044.001 Trypsin-like serine proteases
1bmv1 1.002.009.001 Viral coat and capsid proteins
1bx9A 1.001.047.001 1.003.042.001  
1xypB 1.002.028.001 ConA-like lectins/glucanases
1cb7B unknown  
1bplA unknown  
2rmcG 1.002.058.001 Cyclophilin (peptidylprolyl isomerase)
2nr1_ 1.010.035.001 Transmembrane helical fragments
1qe4C unknown  
1nirB 1.001.003.001 1.002.065.002  

rpfold

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
1FMD 1.002.009.001 Viral coat and capsid proteins
1QFH 1.002.001.001 Immunoglobulin
7CEI 1.001.029.002 1.004.004.001  
1QLX 1.004.006.001 Prion protein domain
1AQD 1.002.001.001 1.004.017.001  

pmap

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
1MPA 1.002.001.001 Immunoglobulin
1FSZ 1.003.027.001 1.004.064.002  
1D7Q unknown  
1ACC 1.006.010.001 Anthrax protective antigen
1NLD 1.002.001.001 Immunoglobulin

prof

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
13BiI unknown  

pssp

jpred2

prof2

nanoworld

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
73ba0 unknown  
7bit unknown  

foresst

pdbblast

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
1de4_A 1.002.001.001 1.004.017.001  
1a6z_A 1.002.001.001 1.004.017.001  
1hny_ 1.002.066.001 1.003.001.007  
1bsi_ 1.002.066.001 1.003.001.007  
1cf3_A 1.003.003.001 1.004.014.001  
1gal_ 1.003.003.001 1.004.014.001  
2plt_ 1.002.005.001 Cupredoxins

sdsc1

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
9oiHi unknown  

sspro

sspsi

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
d1eur__ 1.002.063.001 Sialidases (neuraminidases)
d1vpna_ 1.002.009.001 Viral coat and capsid proteins
d1mec1_ 1.002.009.001 Viral coat and capsid proteins
d1dil__ 1.002.063.001 Sialidases (neuraminidases)
d1tmf1_ 1.002.009.001 Viral coat and capsid proteins
d1prn__ 1.006.004.003 Porins
d1bmv2_ 1.002.009.001 Viral coat and capsid proteins
d1arb__ 1.002.044.001 Trypsin-like serine proteases
d1tmf3_ 1.002.009.001 Viral coat and capsid proteins
d1mec3_ 1.002.009.001 Viral coat and capsid proteins

pred2ary

sausage

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
1a0hE unknown  
1rypB 1.004.132.001 N-terminal nucleophile aminohydrolases (Ntn hydrolases)
1rypF 1.004.132.001 N-terminal nucleophile aminohydrolases (Ntn hydrolases)
1ycsB 1.001.110.002 1.002.032.002  
1led_ 1.002.028.001 ConA-like lectins/glucanases
1lmkE 1.002.001.001 Immunoglobulin
1thv_ 1.002.024.001 Osmotin, thaumatin-like protein
1rypD 1.004.132.001 N-terminal nucleophile aminohydrolases (Ntn hydrolases)
2i1b_ 1.002.040.001 Cytokine
2glsD 1.004.013.009 1.004.107.001  
1b63A 1.004.012.001 1.004.101.001  
1ryp1 1.004.132.001 N-terminal nucleophile aminohydrolases (Ntn hydrolases)
1tttC 1.002.041.003 1.002.042.001 1.003.031.001  
1bruP 1.002.044.001 Trypsin-like serine proteases
1axsB 1.002.001.001 Immunoglobulin
1dkzA 1.005.017.001 Heat shock protein 70kD (HSP70), C-terminal, substrate-binding fragment
1cgsH 1.002.001.001 Immunoglobulin
1figH 1.002.001.001 Immunoglobulin
1ak0_ 1.001.116.001 Phospholipase C/P1 nuclease
1qaeA 1.004.004.001 His-Me finger endonucleases

fugue

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
13Byg unknown  
d1qaxa1 1.004.048.019 NAD-binding domain of HMG-CoA reductase
d1c28a 1.002.021.001 TNF-like
d1a79a2 1.004.060.001 tRNA splicing endonuclease, N-terminal domain
d1c3ja 1.003.082.001 beta-Glucosyltransferase & glycogen phosphorylase
d1biha1 1.002.001.001 Immunoglobulin
1qax_A 1.004.048.019 1.004.156.001  
1c28_A 1.002.021.001 TNF-like
1bts_0 1.010.035.001 Transmembrane helical fragments
1prn 1.006.004.003 Porins
1pho 1.006.004.003 Porins
2omf 1.006.004.003 Porins
2por 1.006.004.003 Porins
1hc1 1.001.081.001 1.001.082.001 1.002.001.001  
1lla 1.001.081.001 1.001.082.001 1.002.001.001  
1afo_A 1.010.035.001 Transmembrane helical fragments
1a79_A 1.003.047.002 1.004.060.001  
1c3j_A 1.003.082.001 beta-Glucosyltransferase & glycogen phosphorylase
1bih_A 1.002.001.001 Immunoglobulin
2hrp_P unknown  

target99

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
1qruA 1.002.050.001 1.003.019.001  
1euqA unknown  
1euyA unknown  
1exdA unknown  
1gsgP 1.002.050.001 1.003.019.001  
1gtrA 1.002.050.001 1.003.019.001  
1gtsA 1.002.050.001 1.003.019.001  
1qrsA 1.002.050.001 1.003.019.001  
1qtqA 1.002.050.001 1.003.019.001  
1qrtA 1.002.050.001 1.003.019.001  
1xtcA unknown  
1abrB 1.002.040.002 Ricin B-like
1htlA unknown  
1d7qA unknown  
1ltaA unknown  
1ltbA unknown  
1ltsA unknown  
1lttA unknown  
1ltiA unknown  
1ltgA unknown  

jigsaw

inbgu

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
1wba 1.002.040.004 STI-like
1qr4a 1.002.001.002 Fibronectin type III
1mfn 1.002.001.002 Fibronectin type III
2aaib_ 1.002.040.002 1.004.143.001  
1als unknown  
1bf8 1.002.001.010 1.002.006.002  
1srp_2 unknown  
1edha 1.002.001.006 Cadherin
8faba 1.002.001.001 Immunoglobulin
1gof_1 unknown  
1b6u 1.002.001.002 Fibronectin type III
2ltna unknown  
1qfha 1.002.001.001 Immunoglobulin
2fb4h 1.002.001.001 Immunoglobulin
1cfb 1.002.001.002 Fibronectin type III
1vmoa 1.002.072.001 Vitelline membrane outer protein-I (VMO-I)
1qg3a 1.002.001.002 Fibronectin type III
8fabb 1.002.001.001 Immunoglobulin
1xum unknown  
1aoza_ 1.002.005.001 Cupredoxins

psipred

isites2

threadwithseq

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
1pgs 1.002.012.001 PHM/PNGase F
1fc2D 1.002.001.001 Immunoglobulin
1zxq 1.002.001.001 Immunoglobulin
1wba 1.002.040.004 STI-like
1hnf 1.002.001.001 Immunoglobulin
1havA 1.002.044.001 Trypsin-like serine proteases
2i1b 1.002.040.001 Cytokine
1try 1.002.044.001 Trypsin-like serine proteases

genthreader

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
1cwvA 1.002.001.013 1.004.147.001  
1dabA 1.002.075.001 Pectin lyase-like
1edqA 1.002.001.001 1.003.001.007 1.004.024.003  
1cby0 1.004.086.001 Mosquitocidal delta-endotoxin CytB
1dbgA 1.002.075.001 Pectin lyase-like
1ulo0 1.002.017.001 Galactose-binding domain-like
3btaA 1.002.028.001 1.002.040.004 1.004.076.001 1.008.003.002  
2xbd0 1.002.002.002 Carbohydrate-binding domain
1bhe0 1.002.075.001 Pectin lyase-like

mgenthreader

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
1cwvA 1.002.001.013 1.004.147.001  
1dabA 1.002.075.001 Pectin lyase-like
2pia01 1.002.041.001 1.003.018.001 1.004.013.006  
1cby0 1.004.086.001 Mosquitocidal delta-endotoxin CytB
1fsz02 1.003.027.001 1.004.064.002  
1dbgA 1.002.075.001 Pectin lyase-like
1ulo0 1.002.017.001 Galactose-binding domain-like
3btaA 1.002.028.001 1.002.040.004 1.004.076.001 1.008.003.002  
2xbd0 1.002.002.002 Carbohydrate-binding domain

3dpssm

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
d1ulo__ 1.002.017.001 Galactose-binding domain-like
c1cx1a_ unknown  
d1wba__ 1.002.040.004 STI-like
c1qfha_ 1.002.001.001 Immunoglobulin
d1vmoa_ 1.002.072.001 Vitelline membrane outer protein-I (VMO-I)
d1ncia_ 1.002.001.006 Cadherin
c1ncja_ 1.002.001.006 Cadherin
c1qr4a_ 1.002.001.002 Fibronectin type III
d1eut_2 1.002.017.001 Galactose-binding domain-like
d1dlpa_ 1.002.073.001 alpha-D-mannose-specific plant lectins
d1gof_2 1.002.017.001 Galactose-binding domain-like
d1pfc__ 1.002.001.001 Immunoglobulin
d1sat_1 1.002.074.001 Metalloprotease, C-terminal domain
d1nif_1 1.002.005.001 Cupredoxins
c1ccza_ 1.002.001.001 Immunoglobulin
d4wbca_ 1.002.040.004 STI-like
d1avac_ 1.002.040.004 STI-like
d1vpsa_ 1.002.009.001 Viral coat and capsid proteins
c1an3b_ unknown  
c1ajoa_ 1.002.028.001 ConA-like lectins/glucanases

dillken

loopp

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
1ihp 1.003.055.001 Phosphoglycerate mutase-like
1b8h_A 1.004.110.001 DNA clamp
2mev3 1.002.009.001 Viral coat and capsid proteins
5cpa 1.003.051.004 Zn-dependent exopeptidases
1hnf 1.002.001.001 Immunoglobulin
1bf8 1.002.001.010 1.002.006.002  
1fnh_A 1.002.001.002 Fibronectin type III
2mfn 1.002.001.002 Fibronectin type III
1gtp_A 1.004.080.001 Tetrahydrobiopterin biosynthesis enzymes-like
1oacA 1.002.029.002 1.004.015.002 1.004.067.001  
1dkzA 1.005.017.001 Heat shock protein 70kD (HSP70), C-terminal, substrate-binding fragment
1iak_A 1.002.001.001 1.004.017.001  
1axd_A 1.001.047.001 1.003.042.001  
3pcf_E 1.002.003.004 Protocatechuate-3,4-dioxygenase, alpha and beta chains
1gpc 1.002.038.004 Nucleic acid-binding proteins
1oxm_A 1.003.016.008 Cutinase-like
2erc_A 1.003.061.001 S-adenosyl-L-methionine-dependent methyltransferases
1gdt_A 1.001.004.001 1.003.048.001  
1eriA 1.003.047.001 Restriction endonuclease-like
1chkA 1.004.002.001 Lysozyme-like

cornet

SCOP summary statistics for T0108  

Top superfamilies by number of methods finding them in first 20 hits found  

Superfamily      number of methods    methods
1.002.001.001 13 123d 3dpssm ffas fugue genthreader inbgu loopp pdbblast phd pmap rpfold sausage threadwithseq
1.002.028.001 6 123d 3dpssm ffas genthreader mgenthreader sausage
1.002.009.001 5 3dpssm ffas loopp rpfold sspsi
1.002.040.004 5 3dpssm genthreader inbgu mgenthreader threadwithseq
1.002.044.001 5 ffas phd sausage sspsi threadwithseq
1.002.017.001 4 123d 3dpssm genthreader mgenthreader
1.002.005.001 4 123d 3dpssm inbgu pdbblast
1.002.001.002 3 3dpssm inbgu loopp
1.004.017.001 3 loopp pdbblast rpfold
1.002.040.001 2 sausage threadwithseq
1.004.110.001 2 123d loopp
1.001.047.001 2 ffas loopp
1.003.001.007 2 genthreader pdbblast
1.002.040.002 2 inbgu target99
1.002.072.001 2 3dpssm inbgu
1.008.003.002 2 genthreader mgenthreader
1.002.073.001 2 123d 3dpssm
1.002.001.008 2 123d phd
1.002.075.001 2 genthreader mgenthreader
1.002.001.006 2 3dpssm inbgu

Top families by number of methods finding them in first 20 hits found  

Family                               number of methods    methods
1.002.001.001.001 7 3dpssm inbgu loopp phd pmap sausage threadwithseq
1.002.001.001.005 7 123d 3dpssm ffas fugue genthreader inbgu rpfold
1.002.001.001.002 5 3dpssm loopp pdbblast rpfold threadwithseq
1.002.017.001.006 4 123d 3dpssm genthreader mgenthreader
1.002.009.001.004 4 3dpssm loopp rpfold sspsi
1.002.005.001.003 3 123d 3dpssm inbgu
1.004.017.001.001 3 loopp pdbblast rpfold
1.002.001.002.001 3 3dpssm inbgu loopp
1.002.040.004.001 3 3dpssm inbgu threadwithseq
1.002.028.001.006 3 123d genthreader mgenthreader
1.002.044.001.001 3 ffas phd sspsi
1.002.050.001.002 2 ffas target99
1.002.017.001.001 2 123d 3dpssm
1.002.001.006.001 2 3dpssm inbgu
1.003.051.004.001 2 loopp phd
1.005.017.001.001 2 loopp sausage
1.002.072.001.001 2 3dpssm inbgu
1.004.132.001.004 2 123d sausage
1.002.006.002.001 2 inbgu loopp
1.002.073.001.001 2 123d 3dpssm

Top superfamilies by sum(1/ranks) in first 20 hits found  

Superfamily      sum(1/ranks)    methods
1.002.001.001 7.3 123d 3dpssm ffas fugue genthreader inbgu loopp pdbblast phd pmap rpfold sausage threadwithseq
1.002.009.001 2.9 3dpssm ffas loopp rpfold sspsi
1.003.019.001 2.7 ffas target99
1.002.050.001 2.7 ffas target99
1.002.017.001 2.2 123d 3dpssm genthreader mgenthreader
1.002.040.004 2.1 3dpssm genthreader inbgu mgenthreader threadwithseq
1.002.028.001 2.1 123d 3dpssm ffas genthreader mgenthreader sausage
1.002.001.013 2 genthreader mgenthreader
1.004.147.001 2 genthreader mgenthreader
1.004.132.001 1.8 123d sausage
1.004.017.001 1.8 loopp pdbblast rpfold
1.002.001.002 1.5 3dpssm inbgu loopp
1.002.005.001 1.5 123d 3dpssm inbgu pdbblast
1.002.075.001 1.5 genthreader mgenthreader
1.002.063.001 1.2 sspsi
1.004.048.019 1.2 fugue
1.002.044.001 1.1 ffas phd sausage sspsi threadwithseq
1.003.055.001 1 loopp
1.002.012.001 1 threadwithseq
1.001.025.003 1 phd

Top families by sum(1/ranks) in first 20 hits found  

Family                               sum(1/ranks)    methods
1.003.019.001.001 2.7 ffas target99
1.002.050.001.002 2.7 ffas target99
1.002.001.001.001 2.7 3dpssm inbgu loopp phd pmap sausage threadwithseq
1.002.009.001.004 2.6 3dpssm loopp rpfold sspsi
1.002.001.001.002 2.4 3dpssm loopp pdbblast rpfold threadwithseq
1.004.147.001.003 2 genthreader mgenthreader
1.002.001.013.001 2 genthreader mgenthreader
1.002.040.004.001 1.9 3dpssm inbgu threadwithseq
1.002.017.001.006 1.8 123d 3dpssm genthreader mgenthreader
1.004.132.001.004 1.8 123d sausage
1.004.017.001.001 1.8 loopp pdbblast rpfold
1.002.001.001.005 1.6 123d 3dpssm ffas fugue genthreader inbgu rpfold
1.002.001.002.001 1.5 3dpssm inbgu loopp
1.002.005.001.003 1.3 123d 3dpssm inbgu
1.002.063.001.001 1.2 sspsi
1.004.048.019.001 1.2 fugue
1.002.028.001.002 1.1 3dpssm ffas
1.001.025.003.001 1 phd
1.002.012.001.001 1 threadwithseq
1.003.055.001.003 1 loopp
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