Alignment of T0108____ with d4wbca

Alignment of T0108____ with d4wbca

PSSM Score Key
-10																			10

Bad																			Good

T0108___PSS	Predicted Secondary Structure for your Sequence
T0108___Seq	Your Sequence
d4wbca__Seq	Library Sequence
d4wbca__SS	Known Secondary Structure of the Library Sequence (Assigned by STRIDE)
CORE	A measure of the burial and number of contacts made by a residue. (9 very buried/making many contacts, 0 not buried/making few contacts

T0108___PSS

C

C

C

C

C

E

E

E

E

E

E

E

C

C

C

E

E

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

E

E

E

E

E

C

C

C

C

C

C

C

C

C

C

T0108___Seq

M

G

A

S

G

Q

Y

V

R

A

R

I

K

G

A

Y

Y

A

T

P

V

D

P

V

T

N

Q

P

T

A

P

K

D

F

S

S

G

F

W

D

F

N

D

G

T

T

Q

G

F

G

-------

-

D

-

+

-

-

-

-

+

-

-

-

+

+

-

-

-

-

-

G

-

G

d4wbca__Seq

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

D

D

D

L

V

D

A

E

G

N

L

V

E

N

G

G

T

Y

Y

L

L

P

H

I

W

A

H

G

G

G

d4wbca__SS

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

E

E

E

E

E

E

E

C

C

C

C

C

C

C

E

CORE

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

0

0

0

6

0

0

0

0

0

0

0

5

0

0

0

1

0

1

0

9

0

0

0

0

0

0

0

0

0

0

T0108___PSS

C

.

.

.

.

.

.

C

C

C

C

C

C

C

E

E

E

E

E

C

C

.

.

.

C

C

C

C

E

E

E

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

E

E

E

T0108___Seq

V

.

.

.

.

.

.

N

P

D

S

P

I

T

A

I

N

V

E

N

A

.

.

.

N

N

A

L

K

I

S

N

L

N

S

K

G

S

N

D

L

S

E

G

N

F

W

A

N

V

-------

+

N

-

+

-

P

+

T

-

+

-

-

-

N

+

-

+

I

S

-

-

S

-

-

+

-

G

V

d4wbca__Seq

I

E

T

A

K

T

G

N

E

P

C

P

L

T

V

V

R

S

P

N

E

V

S

K

G

E

P

I

R

I

S

S

.

.

Q

F

L

S

L

F

I

P

R

G

S

L

.

.

.

V

d4wbca__SS

E

E

E

E

C

C

C

C

C

C

C

C

C

E

E

E

E

E

C

C

C

C

C

C

C

C

E

E

E

E

E

E

.

.

C

C

C

C

C

C

C

C

C

C

C

C

.

.

.

E

CORE

6

0

2

0

0

0

0

0

0

0

0

0

1

0

7

0

0

0

0

0

0

0

0

0

0

0

0

5

0

9

0

2

.

.

0

0

0

0

0

0

5

0

0

0

0

0

.

.

.

5

T0108___PSS

E

E

C

C

C

C

C

C

C

C

C

C

C

C

E

E

E

E

E

E

E

E

E

E

E

C

C

C

C

E

E

E

E

E

E

C

C

C

C

C

C

C

C

C

C

C

C

C

C

E

T0108___Seq

R

I

S

A

D

I

W

G

Q

S

I

N

I

Y

G

D

T

K

L

T

M

D

V

I

A

P

T

P

V

N

V

S

I

A

A

I

P

Q

S

S

T

H

G

W

G

N

P

T

R

A

-------

-

+

+

+

-

+

-

-

-

-

-

T

+

+

+

P

-

-

-

+

+

-

-

-

-

Q

-

-

-

-

-

-

-

+

-

d4wbca__Seq

A

L

.

.

.

G

F

A

N

P

P

S

C

A

A

S

P

W

W

T

.

.

.

V

V

D

S

P

Q

G

P

A

V

K

L

S

Q

Q

K

L

P

E

K

D

I

L

V

F

K

F

d4wbca__SS

E

E

.

.

.

E

E

C

C

C

C

C

C

C

C

E

E

E

E

E

.

.

.

E

E

C

C

C

C

C

C

E

E

E

E

E

C

C

C

C

C

H

H

H

C

C

C

E

E

E

CORE

0

9

.

.

.

1

3

0

0

0

0

0

0

1

0

0

0

0

4

0

.

.

.

5

0

0

0

0

0

0

1

0

7

0

3

0

0

0

0

0

0

0

0

0

0

0

1

6

0

7

T0108___PSS

E

E

E

E

C

C

C

.

.

.

.

.

.

.

C

E

E

C

C

C

C

E

E

E

E

E

E

E

E

C

C

C

C

C

C

C

C

C

H

H

C

C

C

C

C

C

C

C

C

C

T0108___Seq

R

I

V

W

T

N

N

.

.

.

.

.

.

.

F

V

A

Q

T

D

G

T

Y

K

A

T

L

T

I

S

T

N

D

S

P

N

F

N

T

I

A

T

D

A

A

D

S

V

V

T

-------

-

+

V

-

N

+

-

+

+

-

-

-

K

-

-

-

I

-

-

-

-

N

-

N

-

-

-

-

+

+

-

+

d4wbca__Seq

E

K

V

S

H

S

N

I

H

V

Y

K

L

L

Y

C

Q

H

D

E

E

D

V

K

C

D

Q

Y

I

G

I

H

R

D

R

N

G

N

R

R

L

V

V

T

E

E

N

P

L

E

d4wbca__SS

E

E

C

C

C

C

C

C

C

C

E

E

E

E

E

E

E

E

E

C

C

E

E

E

E

E

E

E

E

E

E

E

E

C

C

C

C

C

E

E

E

E

E

E

C

C

C

C

C

E

CORE

0

0

0

0

0

0

0

0

0

0

1

0

9

0

1

0

0

0

0

0

0

0

0

0

0

0

0

0

8

2

2

0

0

0

0

0

0

0

0

0

9

0

3

0

0

0

0

0

5

0

T0108___PSS		E	E	E	E	E	E	C	C	C	C		C	E	E	E	E	C	C	E	E	E		C	C
T0108___Seq		N	M	I	L	F	V	G	S	N	S		D	N	I	S	L	D	N	I	K	F		T	K
-------		-	+	+	L	-		-	S	+	+
d4wbca__Seq		L	V	L	L	K	A	K	S	E	T		.	.	.	.	.	.	.	.	.	.		.	.
d4wbca__SS		E	E	E	E	E	C	C	C	C	C		.	.	.	.	.	.	.	.	.	.		.	.
CORE		4	0	7	0	0	0	0	0	0	0		.	.	.	.	.	.	.	.	.	.		.	.