Alignment of T0108____ with d1wba_

Alignment of T0108____ with d1wba_

PSSM Score Key
-10																			10

Bad																			Good

T0108___PSS	Predicted Secondary Structure for your Sequence
T0108___Seq	Your Sequence
d1wba___Seq	Library Sequence
d1wba___SS	Known Secondary Structure of the Library Sequence (Assigned by STRIDE)
CORE	A measure of the burial and number of contacts made by a residue. (9 very buried/making many contacts, 0 not buried/making few contacts

T0108___PSS

C

C

C

C

C

E

E

E

E

E

E

E

C

C

C

E

E

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

E

E

E

E

E

C

C

C

C

C

.

.

.

.

.

T0108___Seq

M

G

A

S

G

Q

Y

V

R

A

R

I

K

G

A

Y

Y

A

T

P

V

D

P

V

T

N

Q

P

T

A

P

K

D

F

S

S

G

F

W

D

F

N

D

G

T

.

.

.

.

.

-------

P

V

-

+

-

+

-

+

-

-

-

+

+

-

F

D

G

d1wba___Seq

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

D

D

P

V

Y

D

A

E

G

N

K

L

V

N

.

R

G

K

Y

T

I

V

S

F

S

D

G

A

G

I

D

V

V

d1wba___SS

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

C

C

C

C

C

C

C

C

C

C

C

C

C

C

.

C

E

E

E

E

E

E

E

C

C

C

C

C

C

E

E

E

E

CORE

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

0

0

0

6

0

0

0

0

0

0

0

7

0

0

.

0

1

0

1

0

8

0

0

0

0

0

0

0

0

5

0

3

0

T0108___PSS

C

C

C

C

C

C

C

C

C

C

C

C

C

E

E

E

E

E

C

C

C

C

C

C

E

E

E

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

E

E

E

E

E

C

C

T0108___Seq

T

Q

G

F

G

V

N

P

D

S

P

I

T

A

I

N

V

E

N

A

N

N

A

L

K

I

S

N

L

N

S

K

G

S

N

D

L

S

E

G

N

F

W

A

N

V

R

I

S

A

-------

-

G

-

N

P

+

P

+

+

I

V

+

N

-

+

-

-

+

+

S

-

-

-

-

N

-

N

R

+

-

d1wba___Seq

A

T

G

.

N

E

N

P

E

D

P

L

.

S

I

.

V

K

S

T

R

N

I

M

Y

A

T

S

I

S

S

E

D

K

T

P

P

Q

P

R

N

I

L

E

N

M

R

L

K

I

d1wba___SS

C

C

C

.

C

C

C

C

C

C

C

C

.

E

E

.

E

E

C

C

C

C

C

C

C

E

E

E

E

E

E

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

E

E

E

CORE

0

0

0

.

0

0

0

0

0

0

0

0

.

0

6

.

0

0

0

0

0

0

0

0

0

0

3

0

9

0

0

0

0

0

0

0

0

0

0

0

0

7

0

1

0

0

0

5

0

6

T0108___PSS

C

C

C

C

C

C

C

C

C

C

E

E

E

E

E

E

E

E

E

E

E

C

C

C

C

E

E

E

E

E

E

C

C

C

C

C

C

C

C

C

C

C

C

C

C

E

E

E

E

E

T0108___Seq

D

I

W

G

Q

S

I

N

I

Y

G

D

T

K

L

T

M

D

V

I

A

P

T

P

V

N

V

S

I

A

A

I

P

Q

S

S

T

H

G

W

G

N

P

T

R

A

R

I

V

W

-------

+

-

-

+

-

-

-

-

V

+

-

-

P

-

-

-

+

-

-

-

-

-

+

-

-

A

-

+

d1wba___Seq

N

.

.

.

F

A

T

D

P

H

K

G

D

.

.

V

W

S

V

V

D

F

Q

P

D

G

Q

Q

L

K

L

A

G

R

Y

P

N

Q

.

.

.

.

V

K

G

A

F

T

I

Q

d1wba___SS

E

.

.

.

E

C

C

C

C

C

C

C

E

.

.

E

E

E

E

E

E

E

C

C

C

E

E

E

E

E

E

C

C

C

C

C

C

E

.

.

.

.

E

C

E

E

E

E

E

E

CORE

0

.

.

.

3

0

0

0

0

0

0

0

0

.

.

0

3

0

4

0

0

0

0

0

0

0

0

0

7

0

2

0

0

0

0

0

0

0

.

.

.

.

2

0

0

0

5

0

9

0

T0108___PSS

C

C

C

C

E

E

C

C

C

C

E

E

E

E

E

E

E

E

C

C

C

C

C

C

C

C

C

H

H

C

C

C

C

C

C

C

C

C

C

E

E

E

E

E

E

C

C

C

C

C

T0108___Seq

T

N

N

F

V

A

Q

T

D

G

T

Y

K

A

T

L

T

I

S

T

N

D

S

P

N

F

N

T

I

A

T

D

A

A

D

S

V

V

T

N

M

I

L

F

V

G

S

N

S

D

-------

-

T

-

-

T

Y

K

-

+

-

-

+

-

-

-

N

-

I

T

D

+

+

+

+

+

-

-

-

S

+

-

-

d1wba___Seq

K

G

S

N

.

.

.

T

P

R

T

Y

K

L

L

F

C

P

V

G

S

P

C

K

N

I

.

G

I

S

T

D

P

E

G

K

K

.

.

R

L

V

V

S

Y

Q

S

D

P

L

d1wba___SS

E

C

C

C

.

.

.

C

C

C

C

E

E

E

E

E

E

E

C

C

C

C

C

E

E

E

.

E

E

E

E

C

C

C

C

C

E

.

.

E

E

E

E

E

C

C

C

C

C

C

CORE

0

0

0

0

.

.

.

0

0

0

0

1

0

8

0

3

0

0

0

0

0

0

0

0

0

6

.

1

1

0

0

0

0

0

0

0

0

.

.

0

6

0

4

0

0

0

0

0

0

2

T0108___PSS

E

E

E

E

C

C

E

E

E

C

C

T0108___Seq

N

I

S

L

D

N

I

K

F

T

K

-------

+

+

-

-

d1wba___Seq

V

V

K

F

H

R

H

.

.

.

.

d1wba___SS

E

E

E

E

E

E

C

.

.

.

.

CORE

0

3

0

7

0

0

0

.

.

.

.