Alignment of T0108____ with d1vpsa

Alignment of T0108____ with d1vpsa

PSSM Score Key
-10																			10

Bad																			Good

T0108___PSS	Predicted Secondary Structure for your Sequence
T0108___Seq	Your Sequence
d1vpsa__Seq	Library Sequence
d1vpsa__SS	Known Secondary Structure of the Library Sequence (Assigned by STRIDE)
CORE	A measure of the burial and number of contacts made by a residue. (9 very buried/making many contacts, 0 not buried/making few contacts

T0108___PSS

C

C

C

C

C

E

E

E

E

E

E

E

C

C

C

E

E

C

C

C

C

C

.

.

.

.

C

C

C

C

C

C

C

C

C

C

C

C

C

E

E

.

.

E

E

E

C

C

C

C

T0108___Seq

M

G

A

S

G

Q

Y

V

R

A

R

I

K

G

A

Y

Y

A

T

P

V

D

.

.

.

.

P

V

T

N

Q

P

T

A

P

K

D

F

S

S

G

.

.

F

W

D

F

N

D

G

-------

G

-

-

V

-

-

-

-

-

G

-

-

-

-

T

-

+

+

P

-

-

Q

P

+

P

+

-

+

G

+

+

-

+

+

G

d1vpsa__Seq

.

.

.

G

G

M

E

V

L

D

L

V

T

G

P

D

S

V

T

E

I

E

A

F

L

N

P

R

M

G

Q

P

P

T

P

E

S

L

T

E

G

G

Q

Y

Y

G

W

S

R

G

d1vpsa__SS

.

.

.

C

C

C

C

E

E

E

E

C

C

C

C

C

C

E

E

E

E

E

E

E

E

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

H

H

H

C

C

C

C

C

C

CORE

.

.

.

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

5

0

2

0

2

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

T0108___PSS

C

C

C

C

C

C

C

C

C

C

C

C

.

.

.

.

C

C

E

E

E

E

E

C

C

C

C

C

C

E

E

E

.

.

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

T0108___Seq

T

T

Q

G

F

G

V

N

P

D

S

P

.

.

.

.

I

T

A

I

N

V

E

N

A

N

N

A

L

K

I

S

.

.

N

L

N

S

K

G

S

N

D

L

S

E

G

N

F

W

-------

-

+

-

-

-

-

-

-

D

S

P

+

-

-

+

-

K

+

+

L

N

+

-

-

D

-

-

-

W

d1vpsa__Seq

I

N

L

A

T

S

D

T

E

D

S

P

G

N

N

T

L

P

T

W

S

M

.

.

.

.

.

.

A

K

L

Q

L

P

M

L

N

E

D

L

T

C

D

T

L

Q

.

.

M

W

d1vpsa__SS

C

C

C

C

C

C

C

C

C

C

C

C

C

H

H

H

C

C

E

E

E

E

.

.

.

.

.

.

E

E

E

E

C

C

C

C

C

C

C

C

C

C

C

C

E

E

.

.

E

E

CORE

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

.

.

.

.

.

.

2

0

3

0

3

0

0

0

0

0

0

0

0

0

0

0

0

0

.

.

0

0

T0108___PSS

E

E

E

E

E

C

C

C

C

C

C

.

.

.

.

.

.

.

.

.

.

.

.

.

.

C

C

C

C

C

C

E

E

E

E

.

.

.

.

.

.

E

E

E

E

E

E

E

C

C

T0108___Seq

A

N

V

R

I

S

A

D

I

W

G

.

.

.

.

.

.

.

.

.

.

.

.

.

.

Q

S

I

N

I

Y

G

D

T

K

.

.

.

.

.

.

L

T

M

D

V

I

A

P

T

-------

-

-

V

-

+

+

+

-

G

N

-

+

G

-

-

+

-

+

-

-

+

-

-

d1vpsa__Seq

E

A

V

S

V

K

T

E

V

V

G

S

G

S

L

L

D

V

H

G

F

N

K

P

T

D

T

V

N

T

K

G

I

S

T

P

V

E

G

S

Q

Y

H

V

F

A

V

G

G

E

d1vpsa__SS

E

E

E

E

E

E

E

E

E

C

C

H

H

H

H

H

C

C

C

C

C

C

C

E

E

E

C

C

C

C

E

E

E

E

C

C

C

C

C

C

E

E

E

E

E

E

E

E

C

C

CORE

0

9

0

0

5

0

0

0

1

0

0

1

0

0

1

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

1

1

9

2

1

0

T0108___PSS

C

C

E

E

E

E

E

E

C

C

C

C

C

C

C

C

C

C

C

C

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

C

C

E

E

E

E

E

C

.

T0108___Seq

P

V

N

V

S

I

A

A

I

P

Q

S

S

T

H

G

W

G

N

P

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

T

R

A

R

I

V

W

T

.

-------

P

+

-

+

+

-

+

+

+

-

-

+

-

+

+

+

+

-

+

-

+

d1vpsa__Seq

P

.

.

L

D

L

Q

G

L

V

T

D

A

R

T

K

Y

K

E

E

G

V

V

T

I

K

T

I

T

K

K

D

M

V

N

K

D

Q

V

L

N

P

I

S

K

A

K

L

D

K

d1vpsa__SS

C

.

.

E

E

E

E

E

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

H

H

H

H

H

C

C

C

C

C

H

H

H

H

C

C

C

C

C

C

E

E

E

E

C

C

CORE

0

.

.

1

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

1

0

0

T0108___PSS

.

.

.

.

.

.

C

C

C

E

.

.

.

E

C

C

C

C

E

.

E

E

E

E

E

E

E

C

C

C

C

C

C

.

.

.

.

.

.

C

C

C

H

H

C

C

C

.

.

.

T0108___Seq

.

.

.

.

.

.

N

N

F

V

.

.

.

A

Q

T

D

G

T

.

Y

K

A

T

L

T

I

S

T

N

D

S

P

.

.

.

.

.

.

N

F

N

T

I

A

T

D

.

.

.

-------

-

+

A

+

T

Y

-

+

+

T

-

T

+

-

-

P

-

T

+

-

-

D

d1vpsa__Seq

D

G

M

Y

P

V

E

I

W

H

P

D

P

A

K

N

E

N

T

R

Y

F

G

N

Y

T

G

G

T

T

T

P

P

V

L

Q

F

T

N

T

L

T

T

V

L

L

D

E

N

G

d1vpsa__SS

C

C

C

E

E

C

C

C

E

E

E

C

C

C

C

C

C

C

E

E

E

E

E

E

E

E

C

C

C

C

C

C

C

E

E

E

E

E

C

C

C

C

E

E

C

C

C

C

C

C

CORE

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

1

0

0

0

0

0

0

0

0

0

0

0

0

1

0

0

0

0

0

0

0

1

0

6

0

0

0

0

0

T0108___PSS

.

.

.

.

.

C

C

C

.

.

.

.

C

C

C

C

E

E

E

E

E

E

C

C

C

C

C

.

.

.

.

.

.

.

.

.

.

.

E

E

E

E

C

C

E

E

E

C

C

T0108___Seq

.

.

.

.

.

A

A

D

.

.

.

.

S

V

V

T

N

M

I

L

F

V

G

S

N

S

D

.

.

.

.

.

.

.

.

.

.

.

N

I

S

L

D

N

I

K

F

T

K

-------

-

+

+

S

V

-

-

M

-

+

+

V

-

N

+

D

+

I

L

-

-

-

-

d1vpsa__Seq

V

G

P

L

C

K

G

E

G

L

Y

L

S

C

V

D

I

M

G

W

R

V

T

R

N

Y

D

V

H

H

W

R

G

L

P

R

Y

F

K

I

T

L

R

K

R

W

V

K

.

d1vpsa__SS

C

C

C

E

E

C

C

C

E

E

E

E

E

E

E

E

E

E

E

E

E

E

C

C

C

C

C

C

E

E

E

E

E

C

C

E

E

E

E

E

E

E

E

E

E

E

E

C

.

CORE

0

0

2

0

2

0

0

0

1

8

0

5

1

1

0

0

0

1

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

1

0

0

0

3

0

8

0

4

0

0

0

0

0

0

.