Alignment of T0108____ with d1vmoa

Alignment of T0108____ with d1vmoa

PSSM Score Key
-10																			10

Bad																			Good

T0108___PSS	Predicted Secondary Structure for your Sequence
T0108___Seq	Your Sequence
d1vmoa__Seq	Library Sequence
d1vmoa__SS	Known Secondary Structure of the Library Sequence (Assigned by STRIDE)
CORE	A measure of the burial and number of contacts made by a residue. (9 very buried/making many contacts, 0 not buried/making few contacts

T0108___PSS

C

C

C

C

C

E

E

E

E

E

E

E

C

C

C

E

E

C

C

C

C

C

C

C

C

C

C

C

C

.

.

.

.

.

.

C

C

C

C

C

C

E

E

E

E

E

C

C

C

C

T0108___Seq

M

G

A

S

G

Q

Y

V

R

A

R

I

K

G

A

Y

Y

A

T

P

V

D

P

V

T

N

Q

P

T

.

.

.

.

.

.

A

P

K

D

F

S

S

G

F

W

D

F

N

D

G

-------

R

R

-

-

-

+

-

-

P

-

+

+

+

+

+

-

+

-

+

-

-

G

F

-

-

-

-

+

+

d1vmoa__Seq

.

.

.

.

.

.

.

.

R

T

R

E

Y

T

S

V

I

T

V

P

.

.

N

G

G

H

W

G

K

W

G

I

R

Q

F

C

H

S

G

Y

A

N

G

F

A

L

K

V

E

P

d1vmoa__SS

.

.

.

.

.

.

.

.

C

C

C

C

C

C

E

E

E

C

C

C

.

.

C

C

C

C

C

C

E

E

C

C

C

E

E

C

C

C

C

C

E

E

E

E

E

E

E

E

C

C

CORE

.

.

.

.

.

.

.

.

0

0

0

0

0

0

0

0

3

0

1

0

.

.

0

0

0

0

0

0

0

0

0

0

0

0

0

2

0

0

0

0

7

0

3

6

0

3

0

0

0

0

T0108___PSS

C

C

C

C

C

C

C

C

C

C

C

C

C

C

E

E

E

E

E

C

C

C

C

C

C

E

E

E

C

C

C

C

C

C

.

.

.

C

C

C

C

C

C

C

C

C

C

E

E

E

T0108___Seq

T

T

Q

G

F

G

V

N

P

D

S

P

I

T

A

I

N

V

E

N

A

N

N

A

L

K

I

S

N

L

N

S

K

G

.

.

.

S

N

D

L

S

E

G

N

F

W

A

N

V

-------

-

Q

+

+

+

-

D

+

-

+

+

+

I

-

+

-

-

+

-

S

+

-

+

G

S

-

-

-

-

-

+

+

-

-

d1vmoa__Seq

S

.

Q

F

G

R

.

.

D

D

T

A

L

N

G

I

R

L

R

C

L

D

G

S

V

I

E

S

L

V

G

K

W

G

T

W

T

S

F

L

V

C

P

T

G

Y

L

V

S

F

d1vmoa__SS

C

.

C

C

C

C

.

.

C

C

C

C

C

C

E

E

E

E

E

E

C

C

C

C

E

E

C

C

C

C

C

C

C

C

E

E

C

C

C

E

E

C

C

C

C

C

E

E

E

E

CORE

0

.

0

0

0

0

.

.

0

0

0

0

2

0

1

8

0

9

0

2

0

0

0

0

0

4

0

1

0

0

0

0

0

0

0

0

0

0

0

2

0

3

0

0

0

0

8

0

0

4

T0108___PSS

E

E

C

C

C

C

C

C

C

C

C

C

C

C

E

E

E

E

E

E

E

E

E

E

E

C

C

C

C

E

E

E

E

E

E

C

C

C

C

C

C

C

C

C

C

C

C

C

C

E

T0108___Seq

R

I

S

A

D

I

W

G

Q

S

I

N

I

Y

G

D

T

K

L

T

M

D

V

I

A

P

T

P

V

N

V

S

I

A

A

I

P

Q

S

S

T

H

G

W

G

N

P

T

R

A

-------

+

+

-

+

+

-

-

-

+

-

+

-

+

N

+

-

-

+

-

-

G

-

G

-

+

d1vmoa__Seq

S

L

R

S

E

K

S

Q

G

G

G

D

D

T

A

.

.

.

.

.

.

.

.

.

.

.

.

A

N

N

I

Q

F

R

C

S

D

E

A

V

L

V

G

D

G

L

S

W

G

R

d1vmoa__SS

E

E

E

E

C

C

C

C

C

C

C

C

C

C

C

.

.

.

.

.

.

.

.

.

.

.

.

C

C

E

E

E

E

E

E

C

C

C

C

E

E

E

C

C

C

C

C

C

C

E

CORE

0

3

0

0

0

0

0

0

0

0

0

0

0

0

0

.

.

.

.

.

.

.

.

.

.

.

.

2

0

0

6

0

6

0

2

0

0

0

0

0

5

0

1

0

1

0

0

0

0

0

T0108___PSS

E

E

E

E

C

C

C

C

E

E

C

C

C

C

E

E

E

E

E

E

E

E

C

C

C

C

C

C

C

C

C

H

H

C

C

C

C

C

C

C

C

C

C

E

E

E

E

E

E

C

T0108___Seq

R

I

V

W

T

N

N

F

V

A

Q

T

D

G

T

Y

K

A

T

L

T

I

S

T

N

D

S

P

N

F

N

T

I

A

T

D

A

A

D

S

V

V

T

N

M

I

L

F

V

G

-------

-

-

W

-

+

+

+

+

+

-

-

+

-

+

+

+

D

D

-

+

+

N

+

F

-

-

d1vmoa__Seq

F

G

P

W

S

K

R

C

K

I

.

.

.

.

.

C

G

L

Q

T

K

V

E

S

P

Q

G

L

.

.

.

.

.

.

R

D

.

.

D

T

A

L

N

N

V

R

F

F

C

C

d1vmoa__SS

E

E

C

C

C

C

C

C

E

E

.

.

.

.

.

E

E

E

E

E

E

E

E

C

C

C

C

C

.

.

.

.

.

.

C

C

.

.

C

C

E

E

E

E

E

E

E

E

E

E

CORE

0

0

0

0

1

0

0

0

0

7

.

.

.

.

.

0

3

6

0

2

0

1

0

0

0

0

0

0

.

.

.

.

.

.

0

0

.

.

0

0

0

3

0

0

5

0

6

0

0

0

T0108___PSS		C	C	C	C	E	E	E	E	C	C		E	E	E	C	C
T0108___Seq		S	N	S	D	N	I	S	L	D	N		I	K	F	T	K
-------
d1vmoa__Seq		K	.	.	.	.	.	.	.	.	.		.	.	.	.	.
d1vmoa__SS		C	.	.	.	.	.	.	.	.	.		.	.	.	.	.
CORE		0	.	.	.	.	.	.	.	.	.		.	.	.	.	.