Alignment of T0108____ with d1ulo_

Alignment of T0108____ with d1ulo_

PSSM Score Key
-10																			10

Bad																			Good

T0108___PSS	Predicted Secondary Structure for your Sequence
T0108___Seq	Your Sequence
d1ulo___Seq	Library Sequence
d1ulo___SS	Known Secondary Structure of the Library Sequence (Assigned by STRIDE)
CORE	A measure of the burial and number of contacts made by a residue. (9 very buried/making many contacts, 0 not buried/making few contacts

T0108___PSS

C

C

C

C

C

E

E

E

E

E

E

E

C

C

C

E

E

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

E

E

E

E

E

C

C

C

C

C

C

C

C

C

C

T0108___Seq

M

G

A

S

G

Q

Y

V

R

A

R

I

K

G

A

Y

Y

A

T

P

V

D

P

V

T

N

Q

P

T

A

P

K

D

F

S

S

G

F

W

D

F

N

D

G

T

T

Q

G

F

G

-------

d1ulo___Seq

.

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d1ulo___SS

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CORE

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T0108___PSS

C

C

C

C

C

C

C

C

E

E

E

E

E

C

C

C

C

C

C

E

E

E

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

E

E

E

E

E

C

C

C

C

C

C

.

T0108___Seq

V

N

P

D

S

P

I

T

A

I

N

V

E

N

A

N

N

A

L

K

I

S

N

L

N

S

K

G

S

N

D

L

S

E

G

N

F

W

A

N

V

R

I

S

A

D

I

W

G

.

-------

-

S

P

I

-

-

-

-

+

-

-

-

-

-

+

+

+

+

G

+

-

D

S

+

G

-

+

-

V

-

-

-

-

+

-

+

G

d1ulo___Seq

.

.

.

A

S

P

I

G

E

G

T

F

D

D

G

P

E

G

W

V

A

Y

G

.

.

T

D

G

P

L

D

T

S

T

G

A

L

C

V

A

V

P

A

G

S

A

Q

Y

G

V

d1ulo___SS

.

.

.

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

E

E

E

C

.

.

C

C

C

C

C

C

C

C

C

C

C

E

E

E

E

E

E

E

H

H

C

C

C

C

E

CORE

.

.

.

0

0

0

5

0

0

0

0

2

0

0

0

1

0

0

3

0

7

0

1

.

.

0

0

0

0

5

0

1

0

0

0

0

5

0

8

0

6

0

0

0

1

0

0

0

0

4

T0108___PSS

.

.

.

.

C

C

C

C

C

C

.

E

E

E

.

E

E

E

E

E

E

E

E

C

C

C

C

E

E

E

E

E

E

C

C

C

C

C

C

C

C

C

C

C

C

C

C

E

E

E

T0108___Seq

.

.

.

.

Q

S

I

N

I

Y

.

G

D

T

.

K

L

T

M

D

V

I

A

P

T

P

V

N

V

S

I

A

A

I

P

Q

S

S

T

H

G

W

G

N

P

T

R

A

R

I

-------

-

+

I

+

G

-

T

+

L

+

+

-

A

-

T

+

V

+

V

A

-

+

-

Q

-

-

+

G

+

-

-

-

d1ulo___Seq

G

V

V

L

N

G

V

A

I

E

E

G

T

T

Y

T

L

R

Y

T

A

T

A

S

T

D

V

T

V

.

R

A

L

V

G

Q

N

G

A

.

P

Y

G

T

V

L

D

T

S

P

d1ulo___SS

E

E

E

E

E

C

C

C

C

C

C

C

C

C

E

E

E

E

E

E

E

E

E

C

C

C

C

C

C

.

E

E

E

E

E

E

E

C

C

.

C

C

C

C

C

E

E

E

C

C

CORE

3

8

0

3

0

1

5

0

1

0

0

0

0

0

0

0

1

0

1

0

2

1

5

0

0

0

4

0

6

.

0

1

0

4

1

0

0

0

0

.

0

0

0

0

3

2

0

0

0

1

T0108___PSS

E

E

C

C

C

C

E

E

C

C

C

C

E

E

E

E

E

E

E

E

C

.

.

C

C

C

C

C

C

C

C

H

.

.

.

.

H

C

C

C

C

C

C

C

C

C

C

E

E

E

T0108___Seq

V

W

T

N

N

F

V

A

Q

T

D

G

T

Y

K

A

T

L

T

I

S

.

.

T

N

D

S

P

N

F

N

T

.

.

.

.

I

A

T

D

A

A

D

S

V

V

T

N

M

I

-------

+

T

+

-

+

+

+

+

T

T

S

+

-

-

-

P

+

+

+

+

I

A

-

-

+

-

+

+

-

-

-

d1ulo___Seq

A

L

T

S

.

.

.

.

.

E

P

R

Q

V

T

E

T

F

T

A

S

A

T

Y

P

A

T

P

A

A

D

D

P

E

G

Q

I

A

F

Q

L

G

G

F

S

A

D

A

W

T

d1ulo___SS

C

C

C

C

.

.

.

.

.

C

C

E

E

E

E

E

E

E

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

E

E

E

E

E

E

E

E

C

C

C

C

C

C

E

E

E

CORE

0

5

0

0

.

.

.

.

.

0

0

0

0

0

0

0

0

1

0

2

0

1

0

1

0

0

0

0

0

0

0

0

0

0

2

0

5

0

4

0

9

1

0

1

1

0

0

0

2

1

T0108___PSS

E

E

E

C

C

C

C

C

E

E

E

E

C

.

C

E

E

E

C

C

T0108___Seq

L

F

V

G

S

N

S

D

N

I

S

L

D

.

N

I

K

F

T

K

-------

L

+

D

+

+

+

L

D

+

+

d1ulo___Seq

L

C

L

.

.

.

.

D

D

V

A

L

D

S

E

V

E

L

.

.

d1ulo___SS

E

E

E

.

.

.

.

C

C

C

E

E

E

E

C

C

C

C

.

.

CORE

9

0

3

.

.

.

.

0

0

4

0

3

0

0

0

0

0

0

.

.