Alignment of T0108____ with d1sat_

Alignment of T0108____ with d1sat_

PSSM Score Key
-10																			10

Bad																			Good

T0108___PSS	Predicted Secondary Structure for your Sequence
T0108___Seq	Your Sequence
d1sat_1_Seq	Library Sequence
d1sat_1_SS	Known Secondary Structure of the Library Sequence (Assigned by STRIDE)
CORE	A measure of the burial and number of contacts made by a residue. (9 very buried/making many contacts, 0 not buried/making few contacts

T0108___PSS		C	C	C	C	C	E	E	E	E	E		E	E	C	C	C	E	E	C	C	C		C	C	C	C	C	C	C	C	C	C		C	C	C	C	C	E	E	E	E	E		C	C	C	C	C	C	C	C	C	.
T0108___Seq		M	G	A	S	G	Q	Y	V	R	A		R	I	K	G	A	Y	Y	A	T	P		V	D	P	V	T	N	Q	P	T	A		P	K	D	F	S	S	G	F	W	D		F	N	D	G	T	T	Q	G	F	.
-------																											+		N	-	-	T	-		-	-	D				+	+	+	-		F	N			T	-		-	F
d1sat_1_Seq		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	G	A	N	L	S	T	R		T	G	D	.	.	.	T	V	Y	G		F	N	S	N	T	G	R	D	F	L
d1sat_1_SS		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	C	C	C	C	C	C	C		C	C	C	.	.	.	C	E	E	E		C	C	C	C	C	C	C	H	H	H
CORE		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	0	0	0	0	0	0	0		0	0	0	.	.	.	0	0	1	1		0	0	0	0	0	0	0	0	0	0

T0108___PSS

.

.

C

C

C

C

C

C

C

C

C

E

E

E

E

E

C

C

C

C

C

C

E

E

E

C

C

C

C

C

C

C

C

C

C

C

C

.

.

.

.

.

.

C

C

C

C

E

E

E

T0108___Seq

.

.

G

V

N

P

D

S

P

I

T

A

I

N

V

E

N

A

N

N

A

L

K

I

S

N

L

N

S

K

G

S

N

D

L

S

E

.

.

.

.

.

.

G

N

F

W

A

N

V

-------

-

-

N

+

-

I

-

A

-

-

-

-

N

+

+

-

S

+

-

+

-

L

E

G

-

N

V

d1sat_1_Seq

S

T

T

S

N

S

Q

K

V

I

F

A

A

W

D

A

G

G

N

D

T

F

D

F

S

G

Y

T

A

N

Q

R

I

N

L

N

E

K

S

F

S

D

V

G

G

L

K

G

N

V

d1sat_1_SS

C

C

C

C

C

C

C

C

C

C

E

E

E

C

C

C

C

C

C

C

E

E

E

C

C

C

C

C

C

C

C

E

E

E

C

C

C

C

E

E

E

C

C

C

C

C

C

C

C

E

CORE

0

0

0

0

0

0

0

0

3

0

2

0

3

0

0

0

0

0

0

0

0

5

0

3

0

0

0

0

0

0

0

0

5

0

5

0

0

0

0

0

1

0

3

0

0

0

0

0

0

4

T0108___PSS

E

E

C

C

C

C

C

C

C

C

C

C

C

C

E

E

E

E

E

E

.

E

E

E

E

E

C

C

C

C

E

.

.

.

.

.

.

.

.

E

E

E

E

E

C

C

C

C

C

C

T0108___Seq

R

I

S

A

D

I

W

G

Q

S

I

N

I

Y

G

D

T

K

L

T

.

M

D

V

I

A

P

T

P

V

N

.

.

.

.

.

.

.

.

V

S

I

A

A

I

P

Q

S

S

T

-------

-

I

A

+

I

-

+

-

-

-

+

-

D

V

I

+

-

-

+

N

-

+

-

-

-

-

-

+

-

d1sat_1_Seq

S

I

A

A

.

.

.

.

.

G

V

T

I

E

N

A

I

G

G

S

G

N

D

V

I

V

G

N

A

A

N

N

V

L

K

G

G

A

G

N

D

V

L

F

G

G

G

G

A

D

d1sat_1_SS

E

E

C

C

.

.

.

.

.

C

C

C

C

C

E

E

E

C

C

C

C

C

C

E

E

E

C

C

C

C

C

C

E

E

E

C

C

C

C

C

C

E

E

E

C

C

C

C

C

C

CORE

0

3

0

0

.

.

.

.

.

0

0

0

3

0

0

7

0

2

0

0

0

0

0

0

5

0

2

0

0

0

0

0

0

6

0

2

1

0

0

0

0

0

5

0

2

0

0

0

0

0

T0108___PSS		C	C	C	C	C	C	C	C	E	E		E	E	.	.	.	.	.	.	.	.		.	.	.	.	.	E	C	C	C	C		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.
T0108___Seq		H	G	W	G	N	P	T	R	A	R		I	V	.	.	.	.	.	.	.	.		.	.	.	.	.	W	T	N	N	F		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.
-------			-	W	G			-	+	-	+		-	V															W	-	-	+	F
d1sat_1_Seq		E	L	W	G	G	A	G	K	D	I		F	V	F	S	A	A	S	D	S	A		P	G	A	S	D	W	I	R	D	F		Q	K	G	I	D	K	I	D	L	S		F	F	D	K	E	A	N	S	S	S
d1sat_1_SS		E	E	E	C	C	C	C	C	C	E		E	E	C	C	C	H	H	H	C	C		C	C	C	C	E	E	E	C	C	C		C	C	C	C	C	E	E	E	C	H		H	H	H	H	H	H	C	C	C	C
CORE		0	5	0	2	0	0	0	0	0	0		4	0	6	0	0	2	0	0	3	0		0	0	0	0	1	0	6	0	0	3		0	0	0	0	0	0	7	0	8	0		0	2	0	0	0	0	0	0	0	0

T0108___PSS

.

.

.

.

E

E

C

C

C

C

E

E

.

E

E

E

E

E

E

.

C

C

C

C

C

C

C

C

C

.

H

H

C

C

C

C

C

C

C

C

C

C

E

E

E

E

E

E

C

C

T0108___Seq

.

.

.

.

V

A

Q

T

D

G

T

Y

.

K

A

T

L

T

I

.

S

T

N

D

S

P

N

F

N

.

T

I

A

T

D

A

A

D

S

V

V

T

N

M

I

L

F

V

G

S

-------

V

-

G

T

-

A

+

L

-

+

-

-

+

+

I

+

-

+

A

A

-

-

+

-

+

+

-

-

V

-

d1sat_1_Seq

F

I

H

F

V

D

H

F

S

G

T

A

G

E

A

L

L

S

Y

N

A

S

S

N

V

T

D

L

S

V

N

I

G

G

H

A

A

P

D

F

L

V

K

I

V

G

Q

V

D

V

d1sat_1_SS

C

C

E

E

C

C

C

C

C

C

C

C

C

E

E

E

E

E

E

E

C

C

C

C

E

E

E

E

E

E

E

C

C

C

C

C

C

C

C

E

E

E

E

E

E

C

C

C

C

C

CORE

1

6

0

5

0

0

0

0

0

0

0

0

2

0

7

0

5

0

0

0

0

0

0

0

0

2

0

9

0

5

0

3

0

0

0

0

0

0

0

5

0

5

0

5

0

0

0

4

0

2

T0108___PSS		C	C	C	E	E	E	E	C	C	E		E	E	C	C
T0108___Seq		N	S	D	N	I	S	L	D	N	I		K	F	T	K
-------		-	+	D	-	I	-
d1sat_1_Seq		A	T	D	F	I	V	.	.	.	.		.	.	.	.
d1sat_1_SS		C	C	C	C	C	C	.	.	.	.		.	.	.	.
CORE		0	0	0	5	0	4	.	.	.	.		.	.	.	.