Alignment of T0108____ with d1pfc_

Alignment of T0108____ with d1pfc_

PSSM Score Key
-10																			10

Bad																			Good

T0108___PSS	Predicted Secondary Structure for your Sequence
T0108___Seq	Your Sequence
d1pfc___Seq	Library Sequence
d1pfc___SS	Known Secondary Structure of the Library Sequence (Assigned by STRIDE)
CORE	A measure of the burial and number of contacts made by a residue. (9 very buried/making many contacts, 0 not buried/making few contacts

T0108___PSS

C

C

C

C

C

E

E

E

E

E

E

E

C

C

C

E

E

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

E

E

E

E

E

C

C

C

C

C

C

C

C

C

C

T0108___Seq

M

G

A

S

G

Q

Y

V

R

A

R

I

K

G

A

Y

Y

A

T

P

V

D

P

V

T

N

Q

P

T

A

P

K

D

F

S

S

G

F

W

D

F

N

D

G

T

T

Q

G

F

G

-------

-

-

I

-

A

+

-

-

-

+

-

+

V

-

-

-

P

-

+

+

+

+

S

+

-

-

-

-

-

-

d1pfc___Seq

.

.

.

.

.

.

.

.

.

R

T

I

S

K

A

K

G

P

P

R

I

P

E

V

Y

L

L

P

P

P

R

N

E

L

S

K

.

.

.

.

.

.

K

K

V

S

L

T

C

M

d1pfc___SS

.

.

.

.

.

.

.

.

.

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

E

E

C

C

C

C

C

C

C

C

C

.

.

.

.

.

.

C

C

C

C

E

E

E

E

CORE

.

.

.

.

.

.

.

.

.

0

0

0

0

0

0

0

0

0

0

0

1

0

0

1

0

0

0

0

0

0

0

0

0

0

0

0

.

.

.

.

.

.

0

0

0

0

0

0

0

0

T0108___PSS

C

C

C

C

C

C

C

C

E

E

E

E

E

.

C

C

C

C

C

C

E

E

E

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

E

E

E

E

E

.

.

C

C

C

C

T0108___Seq

V

N

P

D

S

P

I

T

A

I

N

V

E

.

N

A

N

N

A

L

K

I

S

N

L

N

S

K

G

S

N

D

L

S

E

G

N

F

W

A

N

V

R

I

.

.

S

A

D

I

-------

+

+

-

-

P

-

+

I

N

V

E

-

-

-

-

N

-

-

-

-

-

D

+

S

F

-

-

-

R

+

D

d1pfc___Seq

I

T

G

F

Y

P

A

D

.

I

N

V

E

W

D

S

S

E

P

S

D

Y

K

N

T

P

P

V

F

D

T

D

G

S

.

.

.

F

F

L

Y

S

R

L

K

V

D

T

D

A

d1pfc___SS

E

C

C

C

C

C

C

C

.

C

E

E

E

C

C

C

C

C

C

C

E

E

E

E

E

C

C

C

C

C

C

C

C

C

.

.

.

C

C

E

E

E

E

E

E

C

C

C

C

C

CORE

9

3

2

1

0

0

0

0

.

8

0

9

0

0

0

0

0

0

0

0

0

1

0

0

1

0

2

0

0

0

0

0

0

1

.

.

.

4

1

9

0

3

0

0

0

0

0

0

0

0

T0108___PSS

C

C

C

C

C

C

C

C

E

E

E

E

E

E

E

E

E

E

E

C

C

.

C

C

E

E

E

E

E

E

C

C

C

C

C

C

C

C

C

C

C

C

C

C

E

E

E

E

E

C

T0108___Seq

W

G

Q

S

I

N

I

Y

G

D

T

K

L

T

M

D

V

I

A

P

T

.

P

V

N

V

S

I

A

A

I

P

Q

S

S

T

H

G

W

G

N

P

T

R

A

R

I

V

W

T

-------

W

+

+

T

-

V

-

+

P

-

-

V

-

-

-

I

-

S

+

-

d1pfc___Seq

W

N

N

G

.

.

.

.

.

.

E

S

F

T

C

S

V

M

H

E

A

L

P

N

H

V

I

Q

K

S

I

S

R

S

P

G

.

.

.

.

.

.

.

.

.

.

.

.

.

.

d1pfc___SS

C

C

C

C

.

.

.

.

.

.

C

C

C

E

E

E

E

E

E

C

C

C

C

E

E

E

E

E

E

C

C

C

C

C

C

C

.

.

.

.

.

.

.

.

.

.

.

.

.

.

CORE

0

0

0

0

.

.

.

.

.

.

0

0

0

0

2

0

9

0

0

0

0

0

0

0

0

2

0

0

0

0

0

0

0

0

0

0

.

.

.

.

.

.

.

.

.

.

.

.

.

.

T0108___PSS

C

C

C

E

E

C

C

C

C

E

E

E

E

E

E

E

E

C

C

C

C

C

C

C

C

C

H

H

C

C

C

C

C

C

C

C

C

C

E

E

E

E

E

E

C

C

C

C

C

E

T0108___Seq

N

N

F

V

A

Q

T

D

G

T

Y

K

A

T

L

T

I

S

T

N

D

S

P

N

F

N

T

I

A

T

D

A

A

D

S

V

V

T

N

M

I

L

F

V

G

S

N

S

D

N

-------

d1pfc___Seq

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d1pfc___SS

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.

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.

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.

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CORE

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T0108___PSS		E	E	E	C	C	E	E	E	C	C
T0108___Seq		I	S	L	D	N	I	K	F	T	K
-------
d1pfc___Seq		.	.	.	.	.	.	.	.	.	.
d1pfc___SS		.	.	.	.	.	.	.	.	.	.
CORE		.	.	.	.	.	.	.	.	.	.