Alignment of T0108____ with d1nif_

Alignment of T0108____ with d1nif_

PSSM Score Key
-10																			10

Bad																			Good

T0108___PSS	Predicted Secondary Structure for your Sequence
T0108___Seq	Your Sequence
d1nif_1_Seq	Library Sequence
d1nif_1_SS	Known Secondary Structure of the Library Sequence (Assigned by STRIDE)
CORE	A measure of the burial and number of contacts made by a residue. (9 very buried/making many contacts, 0 not buried/making few contacts

T0108___PSS

C

C

C

C

C

E

E

E

E

E

E

E

C

C

C

E

E

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

.

.

C

C

C

E

E

E

E

E

.

.

.

.

.

C

C

C

T0108___Seq

M

G

A

S

G

Q

Y

V

R

A

R

I

K

G

A

Y

Y

A

T

P

V

D

P

V

T

N

Q

P

T

A

P

K

.

.

D

F

S

S

G

F

W

D

.

.

.

.

.

F

N

D

-------

+

S

-

-

-

R

+

+

-

-

+

+

-

-

-

-

-

-

-

-

+

-

T

+

P

+

F

+

-

+

+

-

+

-

+

d1nif_1_Seq

.

D

I

S

.

T

L

P

R

V

K

V

D

L

V

K

P

P

F

V

H

A

H

D

Q

V

A

K

T

G

P

R

V

V

E

F

T

M

T

I

E

E

K

K

L

V

I

D

R

E

d1nif_1_SS

.

C

H

H

.

H

C

C

E

E

E

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

E

E

E

E

E

E

E

E

E

E

E

E

E

E

C

C

C

C

CORE

.

0

0

0

.

0

0

0

0

0

0

2

0

5

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

2

0

6

0

7

0

3

0

0

0

0

0

0

0

0

0

0

T0108___PSS

C

C

C

.

C

C

C

C

C

C

C

C

C

C

C

C

E

E

E

E

E

C

C

C

C

C

C

E

E

E

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

E

E

E

E

T0108___Seq

G

T

T

.

Q

G

F

G

V

N

P

D

S

P

I

T

A

I

N

V

E

N

A

N

N

A

L

K

I

S

N

L

N

S

K

G

S

N

D

L

S

E

G

N

F

W

A

N

V

R

-------

G

T

-

-

N

+

-

P

-

-

-

V

+

N

+

-

+

-

-

+

N

-

-

L

-

-

+

F

-

A

-

d1nif_1_Seq

G

T

E

I

H

A

M

T

F

N

G

S

V

P

G

P

L

M

V

V

H

.

E

N

D

Y

V

E

L

R

L

I

N

P

D

T

N

T

L

L

H

N

I

D

F

H

A

.

.

A

d1nif_1_SS

C

C

E

E

E

E

E

E

E

C

C

C

C

C

C

C

E

E

E

E

E

.

C

C

E

E

E

E

E

E

E

E

E

C

C

C

C

C

C

C

C

C

E

E

E

C

C

.

.

C

CORE

0

0

0

0

0

0

0

0

5

0

0

0

0

0

2

3

0

8

0

9

0

.

0

0

0

0

9

0

6

0

6

0

0

0

0

0

0

0

0

0

0

0

6

0

5

0

7

.

.

1

T0108___PSS

E

C

C

C

C

C

C

C

C

C

C

C

C

E

E

E

E

E

E

E

E

E

E

E

C

C

C

C

E

E

E

E

E

E

C

C

C

C

.

.

C

C

C

C

C

C

C

C

C

C

T0108___Seq

I

S

A

D

I

W

G

Q

S

I

N

I

Y

G

D

T

K

L

T

M

D

V

I

A

P

T

P

V

N

V

S

I

A

A

I

P

Q

S

.

.

S

T

H

G

W

G

N

P

T

R

-------

-

A

-

+

-

G

-

-

-

+

-

-

+

+

-

T

+

-

-

-

A

-

P

-

-

-

-

-

-

P

+

+

+

-

H

-

-

-

+

-

d1nif_1_Seq

T

G

A

L

G

G

G

A

L

T

Q

V

N

P

G

E

E

T

T

L

R

F

K

A

T

K

P

G

V

F

V

Y

H

C

A

P

E

G

M

V

P

W

H

V

T

S

G

M

N

G

d1nif_1_SS

C

C

H

H

H

H

C

C

C

C

C

C

C

C

C

E

E

E

E

E

E

E

E

E

C

C

C

E

E

E

E

E

E

E

C

C

C

C

C

H

H

H

H

H

H

C

C

C

E

E

CORE

0

0

0

0

1

0

0

0

0

2

0

2

0

0

0

0

0

1

0

2

0

4

0

7

0

0

0

1

0

3

0

3

0

1

0

0

0

0

0

0

0

0

0

0

0

0

0

2

0

1

T0108___PSS		E	E	E	E	E	C	C	C	C	E		E	C	C	C	C	E	E	E	E	E		E	E	E	C	C	C	C	C	C	C		C	C	H	H	C	C	C	C	C	C		C	C	C	C	E	E	E	E	E	E
T0108___Seq		A	R	I	V	W	T	N	N	F	V		A	Q	T	D	G	T	Y	K	A	T		L	T	I	S	T	N	D	S	P	N		F	N	T	I	A	T	D	A	A	D		S	V	V	T	N	M	I	L	F	V
-------		A	+		V	-	+	-	+	-			+	-	+	-
d1nif_1_Seq		A	I	M	V	L	P	R	D	G	L		K	D	E	K	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.
d1nif_1_SS		E	E	E	E	E	C	C	C	C	C		C	C	C	C	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.
CORE		0	9	0	6	0	0	0	0	0	0		0	0	0	0	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.

T0108___PSS

C

C

C

C

C

E

E

E

E

C

C

E

E

E

C

C

T0108___Seq

G

S

N

S

D

N

I

S

L

D

N

I

K

F

T

K

-------

d1nif_1_Seq

.

.

.

.

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.

.

.

.

.

d1nif_1_SS

.

.

.

.

.

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.

.

.

.

.

.

.

.

.

CORE

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.