Alignment of T0108____ with d1ncia

Alignment of T0108____ with d1ncia

PSSM Score Key
-10																			10

Bad																			Good

T0108___PSS	Predicted Secondary Structure for your Sequence
T0108___Seq	Your Sequence
d1ncia__Seq	Library Sequence
d1ncia__SS	Known Secondary Structure of the Library Sequence (Assigned by STRIDE)
CORE	A measure of the burial and number of contacts made by a residue. (9 very buried/making many contacts, 0 not buried/making few contacts

T0108___PSS

C

C

C

C

C

E

E

E

E

E

E

E

C

C

C

E

E

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

E

E

E

E

E

C

C

C

C

C

C

C

C

C

C

T0108___Seq

M

G

A

S

G

Q

Y

V

R

A

R

I

K

G

A

Y

Y

A

T

P

V

D

P

V

T

N

Q

P

T

A

P

K

D

F

S

S

G

F

W

D

F

N

D

G

T

T

Q

G

F

G

-------

d1ncia__Seq

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

d1ncia__SS

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

CORE

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

T0108___PSS		C	C	C	C	C	C	C	C	E	E		E	E	E	C	C	C	C	C	C	E		E	E	C	C	C	C	C	C	C	C		C	C	C	C	C	C	C	C	E	E		E	E	E	C	C	C	C	C	C	C
T0108___Seq		V	N	P	D	S	P	I	T	A	I		N	V	E	N	A	N	N	A	L	K		I	S	N	L	N	S	K	G	S	N		D	L	S	E	G	N	F	W	A	N		V	R	I	S	A	D	I	W	G	Q
-------																																				-	S	+	+					+		+		+	+	-	+	-		G
d1ncia__Seq		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	G	S	D	W	V	I	P	.	P		I	N	L	P	E	N	S	R	G	P
d1ncia__SS		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	C	C	C	C	C	C	C	.	C		E	E	E	C	C	C	C	C	C	C
CORE		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	0	0	0	0	0	1	0	.	0		4	0	5	0	0	0	0	0	0	0

T0108___PSS

C

C

C

C

C

E

E

E

E

E

E

E

E

E

E

E

C

C

C

C

E

E

E

E

E

E

.

C

C

C

C

C

C

C

C

C

.

.

C

C

C

C

C

E

E

E

E

E

C

C

T0108___Seq

S

I

N

I

Y

G

D

T

K

L

T

M

D

V

I

A

P

T

P

V

N

V

S

I

A

A

.

I

P

Q

S

S

T

H

G

W

.

.

G

N

P

T

R

A

R

I

V

W

T

N

-------

+

+

-

-

+

+

-

-

-

+

+

-

S

+

-

+

+

-

G

+

-

N

P

-

-

+

+

-

T

d1ncia__Seq

F

P

.

.

Q

E

L

V

R

I

R

S

G

R

D

K

N

L

S

L

R

Y

S

V

T

G

P

G

A

D

Q

P

P

T

G

I

F

I

I

N

P

I

S

G

Q

L

S

V

T

K

d1ncia__SS

C

C

.

.

E

E

E

E

E

C

E

E

H

H

H

H

C

C

C

C

E

E

E

E

E

C

C

C

C

C

C

C

C

C

C

C

E

E

E

C

C

C

C

C

E

E

E

E

C

C

CORE

0

0

.

.

0

0

5

2

0

7

0

0

0

0

0

0

0

0

0

0

0

0

1

9

0

1

0

3

4

0

0

0

0

0

0

2

6

0

6

0

0

0

0

2

0

9

0

4

0

0

T0108___PSS

C

C

E

E

C

C

C

C

E

E

E

E

E

E

E

E

C

C

C

C

C

C

C

C

C

H

H

C

C

C

C

C

C

C

C

C

C

E

E

E

E

E

E

C

C

C

C

C

E

E

T0108___Seq

N

F

V

A

Q

T

D

G

T

Y

K

A

T

L

T

I

S

T

N

D

S

P

N

F

N

T

I

A

T

D

A

A

D

S

V

V

T

N

M

I

L

F

V

G

S

N

S

D

N

I

-------

+

-

-

-

+

-

+

+

+

+

+

+

+

-

+

V

D

d1ncia__Seq

P

L

D

R

E

L

I

A

R

F

H

L

R

A

H

A

V

D

I

N

G

N

Q

V

.

.

.

.

.

.

.

.

.

E

N

P

I

D

I

V

I

N

V

.

.

.

I

D

.

.

d1ncia__SS

C

C

C

C

C

C

C

C

E

E

E

E

E

E

E

E

E

C

C

C

C

C

C

C

.

.

.

.

.

.

.

.

.

C

C

C

E

E

E

E

E

E

E

.

.

.

C

C

.

.

CORE

0

3

0

0

0

0

0

0

0

3

0

8

0

8

0

0

0

0

0

0

0

0

0

0

.

.

.

.

.

.

.

.

.

0

0

0

3

0

8

0

7

0

2

.

.

.

0

0

.

.

T0108___PSS		E	E	C	C	E	E	E	C	C
T0108___Seq		S	L	D	N	I	K	F	T	K
-------
d1ncia__Seq		.	.	.	.	.	.	.	.	.
d1ncia__SS		.	.	.	.	.	.	.	.	.
CORE		.	.	.	.	.	.	.	.	.