Alignment of T0108____ with d1gof_

Alignment of T0108____ with d1gof_

PSSM Score Key
-10																			10

Bad																			Good

T0108___PSS	Predicted Secondary Structure for your Sequence
T0108___Seq	Your Sequence
d1gof_2_Seq	Library Sequence
d1gof_2_SS	Known Secondary Structure of the Library Sequence (Assigned by STRIDE)
CORE	A measure of the burial and number of contacts made by a residue. (9 very buried/making many contacts, 0 not buried/making few contacts

T0108___PSS		C	C	C	C	C	E	E	E	E	E		E	E	C	C	C	E	E	C	C	C		C	C	C	C	C	C	C	C	C	C		C	C	C	C	C	E	E	E	E	E		C	C	C	C	C	C	C	C	C	C
T0108___Seq		M	G	A	S	G	Q	Y	V	R	A		R	I	K	G	A	Y	Y	A	T	P		V	D	P	V	T	N	Q	P	T	A		P	K	D	F	S	S	G	F	W	D		F	N	D	G	T	T	Q	G	F	G
-------																																																			+	+	+		G
d1gof_2_Seq		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	A	S	A	P	I	G
d1gof_2_SS		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	C	C	C	C	C	C
CORE		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	0	0	0	0	0	0

T0108___PSS

C

C

.

C

C

C

C

C

C

E

E

E

E

E

C

C

C

C

C

C

E

E

E

C

C

C

C

C

C

C

C

.

.

.

.

.

C

C

C

C

C

C

C

C

E

E

E

E

E

C

T0108___Seq

V

N

.

P

D

S

P

I

T

A

I

N

V

E

N

A

N

N

A

L

K

I

S

N

L

N

S

K

G

S

N

.

.

.

.

.

D

L

S

E

G

N

F

W

A

N

V

R

I

S

-------

-

+

+

+

+

-

+

+

+

-

+

+

+

+

G

+

-

D

-

+

+

+

F

W

+

d1gof_2_Seq

S

A

I

S

R

N

N

W

A

V

.

.

.

.

.

.

.

.

.

.

.

T

C

D

S

A

Q

S

G

N

E

C

N

K

A

I

D

G

N

K

D

T

F

W

H

T

.

.

.

.

d1gof_2_SS

E

E

E

C

C

C

C

C

E

E

.

.

.

.

.

.

.

.

.

.

.

E

E

C

C

C

C

C

C

C

C

H

H

H

H

H

C

C

C

C

C

C

C

E

E

C

.

.

.

.

CORE

0

0

4

0

0

0

0

1

0

2

.

.

.

.

.

.

.

.

.

.

.

0

0

0

0

0

0

0

0

0

0

1

0

0

3

1

0

0

0

0

0

0

0

0

0

0

.

.

.

.

T0108___PSS

C

C

C

C

C

C

C

C

C

C

C

E

E

E

E

E

E

E

E

E

E

E

C

C

C

C

E

E

E

E

E

E

C

C

C

C

C

C

C

C

C

C

C

C

C

C

E

E

E

E

T0108___Seq

A

D

I

W

G

Q

S

I

N

I

Y

G

D

T

K

L

T

M

D

V

I

A

P

T

P

V

N

V

S

I

A

A

I

P

Q

S

S

T

H

G

W

G

N

P

T

R

A

R

I

V

-------

-

+

G

-

+

+

+

-

+

-

-

+

T

-

D

-

-

+

+

+

V

N

-

-

+

-

-

-

-

Q

+

-

+

+

G

-

+

R

-

+

+

-

d1gof_2_Seq

.

.

F

Y

G

A

N

G

D

P

K

P

P

H

T

Y

T

I

D

M

K

T

T

Q

N

V

N

G

L

S

M

L

P

R

Q

D

G

N

Q

N

.

G

W

I

G

R

H

E

V

Y

d1gof_2_SS

.

.

C

C

H

H

H

C

C

C

C

C

C

E

E

E

E

E

E

E

E

E

E

E

E

E

E

E

E

E

E

E

C

C

C

C

C

C

C

C

.

C

C

E

E

E

E

E

E

E

CORE

.

.

0

0

0

0

0

0

0

0

0

0

0

0

0

1

0

4

0

5

0

0

0

0

0

8

0

2

7

0

2

0

0

0

0

0

0

0

0

0

.

0

0

2

0

0

0

0

8

0

T0108___PSS

E

C

C

C

C

E

E

C

C

C

C

E

E

E

E

E

E

E

E

C

C

C

C

C

C

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

C

C

C

H

H

C

C

C

C

C

T0108___Seq

W

T

N

N

F

V

A

Q

T

D

G

T

Y

K

A

T

L

T

I

S

T

N

D

S

P

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

N

F

N

T

I

A

T

D

A

A

-------

-

+

+

-

+

+

-

G

+

+

A

+

-

+

+

+

-

-

T

-

A

+

+

d1gof_2_Seq

L

S

S

D

G

.

.

T

N

W

G

S

P

V

A

S

G

S

W

F

A

D

S

T

T

K

Y

S

N

F

E

T

R

P

A

R

Y

V

R

L

V

A

I

T

E

A

N

G

Q

P

d1gof_2_SS

E

E

C

C

C

.

.

C

C

C

C

C

C

C

E

E

E

E

C

C

C

C

C

C

C

E

E

E

E

E

E

E

E

E

E

E

E

E

E

E

E

E

E

E

E

C

C

C

C

C

CORE

5

0

0

0

0

.

.

0

0

0

0

0

0

3

4

0

0

0

1

0

0

0

0

0

0

0

0

4

0

4

0

0

0

0

5

0

0

9

0

6

0

1

0

0

0

0

0

0

0

0

T0108___PSS

C

C

C

C

C

E

E

E

E

E

E

C

C

C

C

C

E

E

E

E

C

C

E

E

E

C

C

T0108___Seq

D

S

V

V

T

N

M

I

L

F

V

G

S

N

S

D

N

I

S

L

D

N

I

K

F

T

K

-------

+

-

-

+

-

+

F

-

+

S

d1gof_2_Seq

W

T

S

I

A

E

I

N

V

F

Q

A

S

S

.

.

.

.

.

.

.

.

.

.

.

.

.

d1gof_2_SS

C

C

E

E

C

E

E

E

E

E

E

C

C

C

.

.

.

.

.

.

.

.

.

.

.

.

.

CORE

0

0

0

3

0

0

4

0

9

0

0

0

0

0

.

.

.

.

.

.

.

.

.

.

.

.

.