Alignment of T0108____ with d1eut_

Alignment of T0108____ with d1eut_

PSSM Score Key
-10																			10

Bad																			Good

T0108___PSS	Predicted Secondary Structure for your Sequence
T0108___Seq	Your Sequence
d1eut_2_Seq	Library Sequence
d1eut_2_SS	Known Secondary Structure of the Library Sequence (Assigned by STRIDE)
CORE	A measure of the burial and number of contacts made by a residue. (9 very buried/making many contacts, 0 not buried/making few contacts

T0108___PSS

C

C

C

C

C

E

E

E

E

E

E

E

C

C

C

E

E

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

E

E

E

E

E

C

C

C

C

C

C

C

C

C

C

T0108___Seq

M

G

A

S

G

Q

Y

V

R

A

R

I

K

G

A

Y

Y

A

T

P

V

D

P

V

T

N

Q

P

T

A

P

K

D

F

S

S

G

F

W

D

F

N

D

G

T

T

Q

G

F

G

-------

d1eut_2_Seq

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.

d1eut_2_SS

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CORE

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.

T0108___PSS

C

C

C

C

C

C

C

C

E

E

E

E

E

C

C

C

C

C

C

E

E

E

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

E

E

E

E

E

C

C

C

C

C

C

C

T0108___Seq

V

N

P

D

S

P

I

T

A

I

N

V

E

N

A

N

N

A

L

K

I

S

N

L

N

S

K

G

S

N

D

L

S

E

G

N

F

W

A

N

V

R

I

S

A

D

I

W

G

Q

-------

+

-

+

I

-

-

+

+

-

+

-

+

+

-

+

-

+

-

D

-

+

+

F

W

+

-

+

-

d1eut_2_Seq

.

.

.

.

Q

A

R

M

S

I

A

D

V

D

S

E

E

T

A

R

.

E

D

G

R

A

S

N

V

I

D

G

N

P

S

T

F

W

H

.

.

.

.

.

T

E

W

S

R

A

d1eut_2_SS

.

.

.

.

H

H

H

C

E

E

E

E

E

C

C

C

C

C

C

C

.

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

E

E

.

.

.

.

.

C

C

C

C

C

C

CORE

.

.

.

.

0

0

0

3

0

5

0

0

2

0

0

0

0

0

0

0

.

0

0

0

0

4

1

0

6

3

0

0

0

0

0

0

0

1

0

.

.

.

.

.

0

0

0

0

0

0

T0108___PSS

C

C

C

C

C

E

E

E

E

E

E

E

E

E

E

E

C

C

C

C

E

E

E

E

E

E

C

C

C

C

C

C

C

C

C

C

C

C

C

C

E

E

E

E

E

C

C

C

C

E

T0108___Seq

S

I

N

I

Y

G

D

T

K

L

T

M

D

V

I

A

P

T

P

V

N

V

S

I

A

A

I

P

Q

S

S

T

H

G

W

G

N

P

T

R

A

R

I

V

W

T

N

N

F

V

-------

+

+

+

-

Y

+

-

+

+

-

D

-

-

+

+

-

-

+

-

-

-

-

Q

+

S

+

+

+

+

+

+

-

+

I

-

-

+

N

d1eut_2_Seq

D

A

P

G

Y

.

P

H

R

I

S

L

D

L

G

G

T

H

T

I

S

G

L

Q

Y

T

R

R

Q

N

S

A

N

E

Q

.

.

V

A

D

Y

E

I

Y

T

S

L

N

.

.

d1eut_2_SS

C

C

C

C

C

.

C

E

E

E

E

E

E

E

E

E

E

E

E

E

E

E

E

E

E

E

C

C

C

C

C

C

C

C

C

.

.

E

E

E

E

E

E

E

E

E

C

C

.

.

CORE

0

0

0

0

0

.

0

0

0

6

0

7

0

5

0

0

0

0

0

6

0

3

8

0

1

0

0

0

0

0

0

0

0

0

0

.

.

2

0

0

1

0

7

0

3

0

0

0

.

.

T0108___PSS

E

C

C

C

C

E

E

E

E

E

E

E

E

C

C

C

C

C

C

C

C

C

H

H

C

C

C

C

C

C

C

C

C

C

E

E

E

E

E

E

.

.

.

.

.

.

C

C

C

C

T0108___Seq

A

Q

T

D

G

T

Y

K

A

T

L

T

I

S

T

N

D

S

P

N

F

N

T

I

A

T

D

A

A

D

S

V

V

T

N

M

I

L

F

V

.

.

.

.

.

.

G

S

N

S

-------

-

T

+

-

+

-

+

-

-

-

+

T

+

+

+

+

-

-

+

+

-

+

+

+

+

-

-

I

-

+

V

G

+

d1eut_2_Seq

.

G

T

T

W

D

G

P

V

A

S

G

R

F

T

T

S

L

A

P

Q

R

.

.

.

.

A

V

F

P

A

R

D

A

R

Y

I

R

L

V

A

L

S

E

Q

T

G

H

K

Y

d1eut_2_SS

.

C

C

C

C

E

E

E

E

E

E

E

E

C

C

C

C

C

C

E

E

E

.

.

.

.

E

E

E

E

E

E

E

E

E

E

E

E

E

E

E

E

E

E

C

C

C

C

C

C

CORE

.

0

0

0

0

0

0

0

3

3

0

0

0

1

0

0

0

0

0

0

0

0

.

.

.

.

4

0

5

0

0

0

0

2

0

0

9

0

6

0

1

0

0

0

0

0

0

0

0

0

T0108___PSS

C

E

E

E

E

C

C

E

E

E

C

C

T0108___Seq

D

N

I

S

L

D

N

I

K

F

T

K

-------

-

+

-

-

+

+

-

-

-

+

d1eut_2_Seq

A

A

V

A

E

L

E

V

E

G

Q

R

d1eut_2_SS

C

E

E

C

E

E

E

E

E

E

E

C

CORE

2

0

3

0

0

6

0

8

0

1

0

0