Alignment of T0108____ with d1dlpa

Alignment of T0108____ with d1dlpa

PSSM Score Key
-10																			10

Bad																			Good

T0108___PSS	Predicted Secondary Structure for your Sequence
T0108___Seq	Your Sequence
d1dlpa__Seq	Library Sequence
d1dlpa__SS	Known Secondary Structure of the Library Sequence (Assigned by STRIDE)
CORE	A measure of the burial and number of contacts made by a residue. (9 very buried/making many contacts, 0 not buried/making few contacts

T0108___PSS		C	C	C	C	C	E	E	E	E	E		E	E	C	C	C	E	E	C	C	C		C	C	C	C	C	C	C	C	C	C		C	.	.	.	.	.	.	.	.	.		.	.	.	.	.	C	C	C	C	E
T0108___Seq		M	G	A	S	G	Q	Y	V	R	A		R	I	K	G	A	Y	Y	A	T	P		V	D	P	V	T	N	Q	P	T	A		P	.	.	.	.	.	.	.	.	.		.	.	.	.	.	K	D	F	S	S
-------															-		-	-	+			+		+		-		-	+	Q		-			+																-	D	+	-
d1dlpa__Seq		.	.	.	.	.	.	.	.	.	.		.	.	N	N	I	L	F	G	L	S		H	E	G	S	H	P	Q	T	L	H		A	A	Q	S	L	E	L	S	S	F		R	F	T	M	Q	S	D	C	N	L
d1dlpa__SS		.	.	.	.	.	.	.	.	.	.		.	.	C	C	E	E	E	C	C	C		C	C	C	C	C	C	C	C	C	C		C	C	E	E	E	E	E	C	C	E		E	E	E	E	C	C	C	C	C	E
CORE		.	.	.	.	.	.	.	.	.	.		.	.	0	0	1	7	1	1	0	0		0	0	0	0	0	0	0	0	5	0		0	0	0	0	5	0	0	0	0	1		0	7	0	4	0	0	0	2	0	7

T0108___PSS

E

E

E

E

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

E

E

.

.

.

.

.

.

.

.

.

.

E

E

E

C

C

C

C

C

C

E

E

E

C

C

C

C

T0108___Seq

G

F

W

D

F

N

D

G

T

T

Q

G

F

G

V

N

P

D

S

P

I

T

A

I

.

.

.

.

.

.

.

.

.

.

N

V

E

N

A

N

N

A

L

K

I

S

N

L

N

S

-------

+

-

+

D

+

+

-

-

-

-

N

+

+

+

+

+

+

-

+

N

+

+

-

-

S

+

+

+

d1dlpa__Seq

V

L

F

.

.

.

D

S

D

V

R

V

W

A

S

N

T

A

G

A

T

G

C

R

A

V

L

Q

S

D

G

L

L

V

I

L

T

A

Q

N

T

I

R

W

S

S

G

T

K

G

d1dlpa__SS

E

E

E

.

.

.

C

C

C

C

E

E

E

C

C

C

C

C

C

C

C

C

E

E

C

C

C

C

C

C

C

C

C

C

C

E

E

C

C

C

C

C

C

C

C

C

C

C

C

C

CORE

0

4

0

.

.

.

0

0

0

0

0

1

1

0

2

0

2

0

0

0

0

0

2

0

6

0

6

0

0

0

2

0

9

0

5

0

0

0

0

0

0

0

0

1

0

4

0

0

0

1

T0108___PSS

C

C

C

C

.

.

.

.

C

C

C

C

C

C

C

C

E

E

E

E

E

C

C

C

C

C

C

C

C

C

C

C

C

E

E

E

.

.

.

.

.

E

E

E

E

E

E

E

E

C

T0108___Seq

K

G

S

N

.

.

.

.

D

L

S

E

G

N

F

W

A

N

V

R

I

S

A

D

I

W

G

Q

S

I

N

I

Y

G

D

T

.

.

.

.

.

K

L

T

M

D

V

I

A

P

-------

+

N

-

+

+

+

+

+

-

+

W

+

S

-

+

-

+

+

+

+

+

+

+

-

-

d1dlpa__Seq

S

I

G

N

Y

V

L

V

L

Q

P

D

R

T

V

.

.

.

T

I

Y

G

P

G

L

W

.

D

S

G

T

S

N

K

G

S

V

V

V

A

N

N

G

N

S

I

L

Y

S

T

d1dlpa__SS

C

C

C

C

C

E

E

E

E

E

C

C

C

E

E

.

.

.

E

E

E

C

C

E

E

E

.

E

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

E

E

C

C

C

C

CORE

0

0

0

0

1

2

9

1

4

0

0

0

0

0

6

.

.

.

0

7

0

0

0

0

1

1

.

0

1

0

2

0

0

0

0

0

0

0

0

0

0

0

0

0

0

5

0

0

0

0

T0108___PSS		C	C	C	E	E	E	E	E	E	C		C	C	C	C	C	C	C	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	C	C	C	C	C	C	E
T0108___Seq		T	P	V	N	V	S	I	A	A	I		P	Q	S	S	T	H	G	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	W	G	N	P	T	R	A
-------				-	+	+		-	-	-	-		+	Q	S		+	-	+																														+	G	+	-	T		-
d1dlpa__Seq		N	D	N	H	P	Q	T	L	H	A		T	Q	S	L	Q	L	S	P	Y	R		L	S	M	E	T	D	C	N	L	V		L	F	D	R	D	D	R	V	W	S		T	N	T	A	G	K	G	T	G	C
d1dlpa__SS		C	C	C	C	C	C	E	E	C	C		C	C	C	C	C	C	C	C	C	E		E	E	E	E	C	C	C	E	E	E		E	E	E	C	C	E	E	E	E	C		C	C	C	C	C	C	C	C	C	C
CORE		0	0	0	0	1	0	0	6	0	0		0	0	0	6	0	1	0	0	0	0		8	0	4	0	0	0	2	0	5	0		5	0	0	0	0	0	0	1	1	0		1	0	1	0	0	0	0	0	0	3

T0108___PSS

E

E

E

E

C

C

C

C

.

.

E

E

C

C

C

C

E

E

E

E

E

E

E

E

C

C

C

C

C

C

C

C

C

H

H

C

C

C

C

C

C

C

C

C

C

E

E

E

E

E

T0108___Seq

R

I

V

W

T

N

N

F

.

.

V

A

Q

T

D

G

T

Y

K

A

T

L

T

I

S

T

N

D

S

P

N

F

N

T

I

A

T

D

A

A

D

S

V

V

T

N

M

I

L

F

-------

R

+

V

-

+

+

N

+

-

T

+

+

-

S

N

-

+

-

+

+

+

-

-

-

D

-

N

+

+

d1dlpa__Seq

R

A

V

L

Q

P

N

G

R

M

D

V

L

T

N

Q

.

.

N

I

A

V

W

T

S

G

N

S

R

S

A

G

R

Y

V

F

V

L

Q

P

D

R

.

.

.

N

L

A

I

Y

d1dlpa__SS

E

E

E

E

E

C

C

C

E

E

E

E

E

E

C

C

.

.

C

E

E

E

E

E

C

C

C

C

C

C

C

C

C

C

E

E

E

E

E

C

C

C

.

.

.

E

E

E

E

E

CORE

0

7

0

4

0

0

0

1

0

6

0

5

0

1

0

0

.

.

0

0

0

3

1

0

2

0

0

0

0

0

0

0

0

0

1

6

1

5

0

0

0

0

.

.

.

0

6

0

4

0

T0108___PSS		E	C	C	C	C	C	E	E	E	E		C	C	E	E	E	C	C
T0108___Seq		V	G	S	N	S	D	N	I	S	L		D	N	I	K	F	T	K
-------		-	G	+	-	-	+	-
d1dlpa__Seq		G	G	A	L	W	T	T	.	.	.		.	.	.	.	.	.	.
d1dlpa__SS		C	C	C	C	E	E	C	.	.	.		.	.	.	.	.	.	.
CORE		0	0	0	2	1	0	1	.	.	.		.	.	.	.	.	.	.