Alignment of T0108____ with d1avac

Alignment of T0108____ with d1avac

PSSM Score Key
-10																			10

Bad																			Good

T0108___PSS	Predicted Secondary Structure for your Sequence
T0108___Seq	Your Sequence
d1avac__Seq	Library Sequence
d1avac__SS	Known Secondary Structure of the Library Sequence (Assigned by STRIDE)
CORE	A measure of the burial and number of contacts made by a residue. (9 very buried/making many contacts, 0 not buried/making few contacts

T0108___PSS

C

C

C

C

C

E

E

E

E

E

E

E

C

C

C

E

E

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

.

.

.

C

C

E

E

E

E

E

C

C

C

C

C

C

C

T0108___Seq

M

G

A

S

G

Q

Y

V

R

A

R

I

K

G

A

Y

Y

A

T

P

V

D

P

V

T

N

Q

P

T

A

P

K

D

.

.

.

F

S

S

G

F

W

D

F

N

D

G

T

T

Q

-------

-

-

+

+

P

V

-

-

+

-

+

-

-

+

-

-

S

-

+

+

+

+

+

+

G

-

T

-

d1avac__Seq

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

A

D

P

P

P

V

H

D

T

D

G

H

E

L

R

A

D

A

N

Y

Y

V

L

S

A

N

R

A

H

G

G

G

L

T

M

d1avac__SS

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

E

E

E

E

E

E

C

C

H

H

H

C

C

E

E

E

E

CORE

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

0

0

0

0

0

7

0

0

0

0

0

0

0

7

0

2

0

0

0

1

0

7

0

0

0

0

0

0

0

0

0

0

7

0

2

T0108___PSS

C

C

C

C

C

C

C

C

C

C

C

E

E

.

.

.

E

E

E

C

C

C

C

C

C

E

E

E

.

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

E

E

E

E

E

T0108___Seq

G

F

G

V

N

P

D

S

P

I

T

A

I

.

.

.

N

V

E

N

A

N

N

A

L

K

I

S

.

N

L

N

S

K

G

S

N

D

L

S

E

G

N

F

W

A

N

V

R

I

-------

-

G

-

+

-

P

+

-

+

N

-

+

-

-

-

-

+

+

I

+

-

-

+

+

+

-

-

+

+

+

V

R

I

d1avac__Seq

A

P

G

H

G

R

H

C

P

L

F

V

S

Q

D

P

N

G

Q

H

D

G

F

P

V

R

I

T

P

Y

G

V

A

P

S

D

K

I

I

R

L

S

T

D

.

.

.

V

R

I

d1avac__SS

E

E

E

C

C

E

E

E

E

E

E

E

E

E

E

C

C

C

C

C

C

C

C

C

E

E

E

E

E

C

C

C

C

C

C

C

C

C

C

C

C

C

E

E

.

.

.

E

E

E

CORE

0

0

0

0

0

0

0

0

0

1

0

7

0

0

0

0

0

0

0

0

0

0

1

0

4

0

8

0

1

0

0

0

0

0

0

0

0

0

7

0

3

0

0

0

.

.

.

4

0

5

T0108___PSS

C

C

C

C

C

C

C

C

C

C

C

C

E

E

E

E

E

E

E

E

E

E

E

C

C

C

C

E

E

E

E

E

E

C

C

C

C

C

C

C

C

C

C

C

C

C

C

E

E

E

T0108___Seq

S

A

D

I

W

G

Q

S

I

N

I

Y

G

D

T

K

L

T

M

D

V

I

A

P

T

P

V

N

V

S

I

A

A

I

P

Q

S

S

T

H

G

W

G

N

P

T

R

A

R

I

-------

S

-

+

+

+

-

-

+

+

T

-

+

D

+

+

+

-

-

-

+

+

-

P

+

+

+

+

-

G

+

-

+

-

R

I

d1avac__Seq

S

F

R

A

Y

T

T

C

L

Q

.

.

.

S

T

E

W

H

I

D

S

.

E

L

A

A

G

R

R

H

V

I

T

G

P

V

K

D

P

S

P

S

G

R

E

N

A

F

R

I

d1avac__SS

E

E

C

C

C

C

C

C

C

C

.

.

.

C

C

C

C

E

E

E

E

.

E

E

E

C

C

E

E

E

E

E

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

E

E

E

CORE

0

4

0

1

0

0

0

0

0

0

.

.

.

0

1

0

4

0

3

0

0

.

0

0

0

0

0

0

0

0

7

0

3

0

0

0

0

0

0

0

0

0

0

0

0

0

0

4

0

9

T0108___PSS

E

E

C

C

C

C

E

E

C

C

C

C

E

E

E

.

.

.

.

.

.

.

.

E

E

E

E

E

C

C

C

C

C

C

C

C

C

H

H

C

C

C

C

C

C

C

C

C

C

E

T0108___Seq

V

W

T

N

N

F

V

A

Q

T

D

G

T

Y

K

.

.

.

.

.

.

.

.

A

T

L

T

I

S

T

N

D

S

P

N

F

N

T

I

A

T

D

A

A

D

S

V

V

T

N

-------

-

-

-

+

Y

K

L

-

+

+

+

+

-

+

-

-

+

+

+

+

-

-

-

d1avac__Seq

E

K

Y

S

G

A

.

.

E

V

H

E

.

Y

K

L

M

S

C

G

D

W

C

Q

D

L

G

V

F

R

D

L

K

G

G

A

W

F

L

G

A

.

.

.

.

T

E

P

Y

H

d1avac__SS

E

E

C

C

C

C

.

.

C

C

C

C

.

E

E

E

E

E

E

C

C

C

E

E

E

E

E

E

E

C

C

C

C

C

C

C

C

E

E

E

E

.

.

.

.

C

C

C

C

C

CORE

0

0

0

0

0

0

.

.

0

0

0

0

.

2

0

9

0

3

0

0

0

0

0

0

0

7

1

1

0

0

0

0

0

0

0

0

0

0

7

3

2

.

.

.

.

0

0

0

0

0

T0108___PSS

E

E

E

E

E

C

C

C

C

C

E

E

E

E

C

C

E

E

E

C

C

T0108___Seq

M

I

L

F

V

G

S

N

S

D

N

I

S

L

D

N

I

K

F

T

K

-------

-

+

F

+

-

+

d1avac__Seq

V

V

V

F

K

K

A

P

P

A

.

.

.

.

.

.

.

.

.

.

.

d1avac__SS

E

E

E

E

E

E

E

C

C

C

.

.

.

.

.

.

.

.

.

.

.

CORE

0

4

0

7

0

0

0

0

0

0

.

.

.

.

.

.

.

.

.

.

.