Alignment of T0108____ with c1qr4a

Alignment of T0108____ with c1qr4a

PSSM Score Key
-10																			10

Bad																			Good

T0108___PSS	Predicted Secondary Structure for your Sequence
T0108___Seq	Your Sequence
c1qr4a__Seq	Library Sequence
c1qr4a__SS	Known Secondary Structure of the Library Sequence (Assigned by STRIDE)
CORE	A measure of the burial and number of contacts made by a residue. (9 very buried/making many contacts, 0 not buried/making few contacts

T0108___PSS

C

C

C

C

C

E

E

E

E

E

E

E

C

C

C

E

E

C

C

C

C

C

C

C

C

C

.

C

C

C

C

C

C

C

C

C

E

E

E

.

E

E

C

C

C

C

C

C

C

C

T0108___Seq

M

G

A

S

G

Q

Y

V

R

A

R

I

K

G

A

Y

Y

A

T

P

V

D

P

V

T

N

.

Q

P

T

A

P

K

D

F

S

S

G

F

.

W

D

F

N

D

G

T

T

Q

G

-------

D

+

-

+

+

+

-

+

P

-

+

-

+

-

-

W

+

-

-

+

+

-

+

c1qr4a__Seq

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

D

N

P

K

D

L

E

V

S

D

P

T

E

T

T

L

S

L

R

W

R

R

P

V

A

K

F

D

R

c1qr4a__SS

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

C

C

C

E

E

E

E

E

E

C

C

C

C

C

E

E

E

E

E

E

E

C

C

C

C

C

C

C

E

CORE

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

0

0

1

0

0

5

0

5

0

0

0

0

0

0

0

5

0

8

0

1

0

0

0

0

0

0

0

0

0

T0108___PSS

C

C

C

.

.

.

C

C

C

C

C

C

C

E

E

E

E

E

C

C

C

C

C

C

E

E

E

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

E

E

E

E

E

C

C

T0108___Seq

F

G

V

.

.

.

N

P

D

S

P

I

T

A

I

N

V

E

N

A

N

N

A

L

K

I

S

N

L

N

S

K

G

S

N

D

L

S

E

G

N

F

W

A

N

V

R

I

S

A

-------

+

-

+

P

+

+

+

-

-

-

+

+

+

+

-

+

+

+

+

L

+

-

+

-

-

+

+

+

+

A

c1qr4a__Seq

Y

R

L

T

Y

V

S

P

S

G

K

K

N

E

M

E

I

P

V

D

S

T

S

F

I

L

R

G

L

.

.

.

.

.

.

.

.

.

D

A

G

T

E

Y

T

I

S

L

V

A

c1qr4a__SS

E

E

E

E

E

E

E

C

C

C

E

E

E

E

E

E

E

C

C

C

C

C

E

E

E

E

E

C

C

.

.

.

.

.

.

.

.

.

C

C

C

E

E

E

E

E

E

E

E

E

CORE

0

0

7

0

1

0

0

0

0

0

0

0

0

0

2

0

3

0

0

0

0

0

0

3

0

6

0

0

2

.

.

.

.

.

.

.

.

.

0

2

1

0

0

1

0

8

0

4

0

1

T0108___PSS

C

C

C

C

C

C

C

C

C

C

E

E

E

E

E

E

E

E

E

E

E

C

C

C

C

E

E

E

E

E

E

C

C

C

C

C

.

.

.

.

.

C

C

C

C

C

C

C

C

C

T0108___Seq

D

I

W

G

Q

S

I

N

I

Y

G

D

T

K

L

T

M

D

V

I

A

P

T

P

V

N

V

S

I

A

A

I

P

Q

S

S

.

.

.

.

.

T

H

G

W

G

N

P

T

R

-------

+

G

-

-

T

+

-

-

+

P

-

+

+

S

+

-

I

-

+

S

T

+

-

+

-

+

+

c1qr4a__Seq

.

E

K

G

R

H

K

S

K

P

.

.

T

T

I

K

G

S

T

V

V

G

S

P

K

G

I

S

F

S

D

I

T

E

N

S

A

T

V

S

W

T

P

P

R

S

R

V

D

S

c1qr4a__SS

.

E

C

C

C

C

C

C

C

C

.

.

E

E

E

E

E

E

E

C

C

C

C

C

C

E

E

E

E

E

C

C

C

C

C

C

E

E

E

E

E

E

C

C

C

C

C

C

C

E

CORE

.

0

0

0

0

0

0

0

0

0

.

.

1

0

5

0

3

0

2

1

2

2

1

2

0

1

6

0

4

0

0

1

0

0

0

0

2

0

9

0

1

0

0

1

0

1

0

0

0

0

T0108___PSS

E

E

E

E

E

C

C

C

C

E

E

C

C

C

C

E

E

E

E

E

E

E

E

C

.

.

.

.

.

.

C

C

C

C

C

C

.

.

.

.

C

C

H

H

C

C

C

C

C

C

T0108___Seq

A

R

I

V

W

T

N

N

F

V

A

Q

T

D

G

T

Y

K

A

T

L

T

I

S

.

.

.

.

.

.

T

N

D

S

P

N

.

.

.

.

F

N

T

I

A

T

D

A

A

D

-------

-

R

+

-

+

+

T

S

+

+

-

P

+

+

N

-

I

+

-

-

c1qr4a__Seq

Y

R

V

S

Y

V

P

I

.

.

.

T

G

G

T

P

N

V

V

T

V

D

G

S

K

T

R

T

K

L

V

K

L

V

P

G

V

D

Y

N

V

N

I

I

S

V

K

G

F

E

c1qr4a__SS

E

E

E

E

E

E

E

C

.

.

.

C

C

C

C

C

E

E

E

E

E

E

C

C

C

C

E

E

E

E

C

C

C

C

C

C

C

E

E

E

E

E

E

E

E

E

E

C

C

E

CORE

1

0

8

0

1

0

0

0

.

.

.

0

0

0

0

0

0

0

3

0

1

0

0

0

0

0

0

3

0

6

0

0

2

0

0

0

0

0

0

0

9

0

6

0

3

0

0

0

0

0

T0108___PSS		C	C	C	C	E	E	E	E	E	E		C	C	C	C	C	E	E	E	E	C		C	E	E	E	C	C
T0108___Seq		S	V	V	T	N	M	I	L	F	V		G	S	N	S	D	N	I	S	L	D		N	I	K	F	T	K
-------			-	-	-	-	-	+	-	+	+		-
c1qr4a__Seq		E	S	E	P	I	S	G	I	L	K		T	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.
c1qr4a__SS		E	C	C	C	E	E	E	E	E	E		C	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.
CORE		0	3	0	0	4	0	3	0	5	0		0	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.