Alignment of T0108____ with c1qfha

Alignment of T0108____ with c1qfha

PSSM Score Key
-10																			10

Bad																			Good

T0108___PSS	Predicted Secondary Structure for your Sequence
T0108___Seq	Your Sequence
c1qfha__Seq	Library Sequence
c1qfha__SS	Known Secondary Structure of the Library Sequence (Assigned by STRIDE)
CORE	A measure of the burial and number of contacts made by a residue. (9 very buried/making many contacts, 0 not buried/making few contacts

T0108___PSS		C	C	C	C	C	E	E	E	E	E		E	E	C	C	C	E	E	C	C	C		C	C	C	C	C	C	C	C	C	C		C	C	C	C	.	.	.	.	.	.		.	.	.	.	.	.	.	C	E	E
T0108___Seq		M	G	A	S	G	Q	Y	V	R	A		R	I	K	G	A	Y	Y	A	T	P		V	D	P	V	T	N	Q	P	T	A		P	K	D	F	.	.	.	.	.	.		.	.	.	.	.	.	.	S	S	G
-------																												+	-	+	P	+	A		+	-		+															+		-
c1qfha__Seq		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	K	P	A	P	S	A		E	H	S	Y	A	E	G	E	G	L		V	K	V	F	D	N	A	P	A	E
c1qfha__SS		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	C	C	C	C	C	C		C	C	C	E	E	E	C	H	H	H		C	E	E	E	C	C	C	E	E	E
CORE		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	0	0	0	0	0	2		0	0	2	0	9	0	1	0	3	6		0	0	1	0	0	0	0	0	1	0

T0108___PSS

E

E

E

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

E

E

E

E

E

C

C

C

C

C

C

E

E

E

C

C

C

C

C

C

C

C

C

C

.

.

.

.

.

T0108___Seq

F

W

D

F

N

D

G

T

T

Q

G

F

G

V

N

P

D

S

P

I

T

A

I

N

V

E

N

A

N

N

A

L

K

I

S

N

L

N

S

K

G

S

N

D

L

.

.

.

.

.

-------

F

-

-

F

-

-

+

T

+

-

-

-

-

-

+

+

-

P

-

+

+

-

+

-

+

-

-

+

N

D

+

c1qfha__Seq

F

T

I

F

A

V

D

T

K

G

V

A

R

T

D

G

G

D

P

F

.

E

V

A

I

N

G

P

D

G

.

.

L

V

V

D

A

K

V

T

D

N

N

D

G

T

Y

G

V

V

c1qfha__SS

E

E

E

E

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

E

.

E

E

E

E

E

E

C

C

C

.

.

E

E

E

C

C

E

E

E

E

C

C

C

C

E

E

E

E

E

CORE

7

0

7

0

2

0

0

0

0

0

0

0

0

0

0

0

0

0

0

3

.

0

8

0

4

0

0

0

0

0

.

.

0

0

1

0

5

0

4

0

0

0

0

0

0

0

1

0

6

0

T0108___PSS

.

.

.

.

C

C

C

C

C

C

E

E

E

E

E

C

C

C

.

C

C

C

C

C

C

C

.

.

.

C

C

E

E

.

.

E

E

E

E

E

E

E

E

E

C

C

C

C

E

E

T0108___Seq

.

.

.

.

S

E

G

N

F

W

A

N

V

R

I

S

A

D

.

I

W

G

Q

S

I

N

.

.

.

I

Y

G

D

.

.

T

K

L

T

M

D

V

I

A

P

T

P

V

N

V

-------

-

E

G

N

+

-

N

V

-

+

-

+

I

-

-

-

I

+

I

-

G

+

+

-

+

-

-

+

-

+

V

c1qfha__Seq

Y

D

A

P

V

E

G

N

Y

N

V

N

V

T

L

R

G

N

P

I

K

N

M

P

I

D

V

K

C

I

E

G

A

N

G

E

D

S

S

F

G

S

F

T

.

.

.

F

T

V

c1qfha__SS

E

E

C

C

C

C

E

E

E

E

E

E

E

E

E

C

C

E

E

C

C

C

C

C

E

E

E

E

E

E

C

C

C

E

E

E

E

E

E

E

E

E

E

E

.

.

.

E

E

E

CORE

2

0

0

0

0

0

0

0

0

0

7

0

8

0

2

0

0

0

0

5

0

0

5

0

2

0

4

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

.

.

.

1

0

1

T0108___PSS

E

E

E

E

C

C

C

C

C

C

C

C

C

C

C

C

C

C

E

E

E

E

E

.

.

.

.

.

.

C

C

C

C

E

E

C

C

C

C

E

E

E

E

E

E

E

E

C

C

C

T0108___Seq

S

I

A

A

I

P

Q

S

S

T

H

G

W

G

N

P

T

R

A

R

I

V

W

.

.

.

.

.

.

T

N

N

F

V

A

Q

T

D

G

T

Y

K

A

T

L

T

I

S

T

N

-------

+

A

-

-

-

+

-

-

+

G

-

-

-

+

+

+

T

-

+

-

+

-

D

G

T

Y

-

A

-

+

+

N

c1qfha__Seq

A

.

A

K

N

K

K

G

E

V

K

T

Y

G

G

D

K

F

E

V

S

I

T

G

P

A

E

E

I

T

L

D

A

I

D

N

Q

D

G

T

Y

T

A

A

Y

S

L

V

G

N

c1qfha__SS

E

.

E

E

C

C

C

C

C

C

C

C

C

C

C

C

C

E

E

E

E

E

E

E

C

C

C

E

E

E

E

E

E

E

E

C

C

C

C

E

E

E

E

E

E

E

E

E

C

C

CORE

0

.

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

1

0

2

0

0

0

0

0

0

0

0

0

0

1

0

1

0

0

0

0

0

0

0

0

0

1

0

0

0

0

0

0

0

T0108___PSS

.

.

C

C

C

C

C

C

H

H

C

C

C

C

C

C

C

C

C

C

E

E

E

E

E

E

C

.

C

C

C

C

E

E

E

E

C

C

E

E

E

C

C

T0108___Seq

.

.

D

S

P

N

F

N

T

I

A

T

D

A

A

D

S

V

V

T

N

M

I

L

F

V

G

.

S

N

S

D

N

I

S

L

D

N

I

K

F

T

K

-------

-

S

-

+

-

-

+

+

+

-

+

+

S

-

+

+

-

-

-

G

-

N

-

+

+

-

S

-

-

c1qfha__Seq

G

R

F

S

T

G

V

K

L

N

G

K

H

I

E

G

S

P

F

K

Q

V

L

G

N

P

G

K

K

N

P

E

V

K

S

F

T

T

T

R

T

A

N

c1qfha__SS

E

E

E

E

E

E

E

E

E

C

C

E

E

C

C

C

C

C

E

E

E

E

E

C

C

H

H

H

C

C

C

C

C

C

C

E

E

E

E

E

E

E

C

CORE

0

0

0

0

0

0

2

0

1

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0