Alignment of T0108____ with c1ncja

Alignment of T0108____ with c1ncja

PSSM Score Key
-10																			10

Bad																			Good

T0108___PSS	Predicted Secondary Structure for your Sequence
T0108___Seq	Your Sequence
c1ncja__Seq	Library Sequence
c1ncja__SS	Known Secondary Structure of the Library Sequence (Assigned by STRIDE)
CORE	A measure of the burial and number of contacts made by a residue. (9 very buried/making many contacts, 0 not buried/making few contacts

T0108___PSS

C

C

C

C

C

E

E

E

E

E

E

E

C

C

C

E

E

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

E

E

E

E

E

C

C

C

C

C

C

C

C

C

C

T0108___Seq

M

G

A

S

G

Q

Y

V

R

A

R

I

K

G

A

Y

Y

A

T

P

V

D

P

V

T

N

Q

P

T

A

P

K

D

F

S

S

G

F

W

D

F

N

D

G

T

T

Q

G

F

G

-------

-

-

+

-

P

-

-

-

-

+

-

-

F

+

-

+

-

-

+

-

-

c1ncja__Seq

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

W

V

I

P

P

I

N

L

P

E

N

S

R

G

P

F

P

Q

E

L

V

R

I

R

S

D

R

D

K

N

L

S

c1ncja__SS

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

C

C

C

C

C

C

E

E

E

C

C

C

C

C

C

C

C

E

E

E

E

E

C

C

C

C

H

H

H

C

C

C

CORE

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

0

0

3

0

0

0

0

4

0

0

0

0

0

0

0

0

0

0

0

5

3

0

7

0

0

0

0

0

0

0

0

0

T0108___PSS

.

.

.

.

.

.

.

C

C

C

C

C

C

C

C

E

E

E

E

E

C

C

C

C

C

C

E

E

E

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

E

E

E

E

E

T0108___Seq

.

.

.

.

.

.

.

V

N

P

D

S

P

I

T

A

I

N

V

E

N

A

N

N

A

L

K

I

S

N

L

N

S

K

G

S

N

D

L

S

E

G

N

F

W

A

N

V

R

I

-------

-

D

P

-

T

+

I

-

+

-

N

-

-

+

+

S

+

-

-

D

-

E

-

-

-

-

-

R

-

c1ncja__Seq

L

R

Y

S

V

T

G

P

G

A

D

Q

P

P

T

G

I

F

I

I

N

P

I

S

G

.

Q

L

S

.

.

.

V

T

K

P

L

D

.

R

E

L

I

A

R

F

H

L

R

A

c1ncja__SS

C

E

E

E

E

E

C

C

C

C

C

C

C

C

C

C

C

E

E

E

C

C

C

C

C

.

E

E

E

.

.

.

E

C

C

C

C

C

.

C

C

C

C

C

E

E

E

E

E

E

CORE

0

0

1

0

6

0

0

0

2

4

0

0

0

0

0

0

2

5

1

6

0

0

0

0

2

.

0

9

0

.

.

.

3

0

0

0

4

0

.

0

0

0

0

0

0

3

0

4

0

9

T0108___PSS

C

C

.

C

C

C

C

C

C

C

C

C

C

E

E

E

E

E

E

E

E

E

E

.

.

.

.

.

.

E

C

C

C

C

E

E

E

E

E

E

C

C

C

C

C

C

C

C

C

C

T0108___Seq

S

A

.

D

I

W

G

Q

S

I

N

I

Y

G

D

T

K

L

T

M

D

V

I

.

.

.

.

.

.

A

P

T

P

V

N

V

S

I

A

A

I

P

Q

S

S

T

H

G

W

G

-------

-

A

D

I

-

G

+

+

-

-

+

+

V

I

-

+

-

-

-

-

V

-

-

+

P

+

+

S

+

-

G

c1ncja__Seq

H

A

V

D

I

N

G

N

Q

V

E

.

.

N

P

I

D

I

V

I

N

V

I

D

M

N

D

N

R

P

E

F

L

H

Q

V

W

N

G

S

V

P

E

G

S

K

P

G

.

.

c1ncja__SS

E

E

E

C

C

C

C

C

E

E

E

.

.

E

E

E

E

E

E

E

E

E

E

C

C

C

C

C

C

C

C

C

C

C

C

E

E

E

E

E

E

C

C

C

C

C

C

C

.

.

CORE

0

0

0

0

0

0

0

0

0

0

0

.

.

0

0

3

0

6

0

6

0

1

0

0

0

0

0

0

0

0

0

2

0

0

0

0

1

0

2

0

4

0

0

0

1

0

0

0

.

.

T0108___PSS

C

C

C

C

E

E

E

E

E

.

.

.

.

C

C

C

C

E

E

C

C

C

C

E

E

E

E

E

E

E

E

C

C

C

C

C

C

C

C

C

H

H

.

.

.

.

.

.

.

.

T0108___Seq

N

P

T

R

A

R

I

V

W

.

.

.

.

T

N

N

F

V

A

Q

T

D

G

T

Y

K

A

T

L

T

I

S

T

N

D

S

P

N

F

N

T

I

.

.

.

.

.

.

.

.

-------

T

-

-

V

+

+

-

-

-

-

+

-

-

Y

+

-

+

-

-

-

-

+

-

S

P

N

-

T

I

c1ncja__Seq

.

.

T

Y

V

M

T

V

T

A

I

D

A

D

D

P

N

A

L

N

G

M

L

R

Y

R

I

V

S

Q

A

P

S

T

P

S

P

N

M

F

T

I

N

N

E

T

G

D

I

I

c1ncja__SS

.

.

E

E

E

E

E

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

E

E

E

E

E

E

E

E

C

C

C

C

C

C

C

C

E

E

E

C

C

C

C

C

E

E

E

CORE

.

.

1

0

5

2

0

6

0

2

0

0

0

0

0

0

0

0

0

0

0

0

0

0

1

0

2

0

0

0

0

0

0

0

0

0

0

0

0

4

0

4

0

0

0

0

2

0

6

0

T0108___PSS

.

.

C

C

C

C

C

C

C

C

C

C

E

E

E

E

E

E

.

C

C

C

.

.

.

.

.

.

.

.

C

C

E

E

E

E

C

C

E

E

E

C

C

T0108___Seq

.

.

A

T

D

A

A

D

S

V

V

T

N

M

I

L

F

V

.

G

S

N

.

.

.

.

.

.

.

.

S

D

N

I

S

L

D

N

I

K

F

T

K

-------

A

-

-

-

V

-

-

L

+

+

+

-

N

-

-

-

-

I

+

+

T

-

c1ncja__Seq

T

V

A

A

G

L

D

R

E

K

V

Q

Q

Y

T

L

I

I

Q

A

T

D

M

E

G

N

P

T

Y

G

L

S

N

T

A

T

A

V

I

T

V

T

D

c1ncja__SS

E

C

C

C

C

C

C

C

C

C

C

C

E

E

E

E

E

E

E

E

E

C

H

H

H

C

C

C

C

C

C

E

E

E

E

E

E

E

E

E

E

C

C

CORE

2

0

0

0

0

3

0

0

0

0

0

0

0

0

0

4

0

5

0

2

0

0

0

0

0

0

0

0

0

0

0

0

0

0

1

0

5

0

4

0

0

0

0