Alignment of T0108____ with c1cx1a

Alignment of T0108____ with c1cx1a

PSSM Score Key
-10																			10

Bad																			Good

T0108___PSS	Predicted Secondary Structure for your Sequence
T0108___Seq	Your Sequence
c1cx1a__Seq	Library Sequence
c1cx1a__SS	Known Secondary Structure of the Library Sequence (Assigned by STRIDE)
CORE	A measure of the burial and number of contacts made by a residue. (9 very buried/making many contacts, 0 not buried/making few contacts

T0108___PSS		C	C	C	C	C	E	E	E	E	E		E	E	C	C	C	E	E	C	C	C		C	C	C	C	C	C	C	C	C	C		C	C	C	C	C	E	E	E	E	E		C	C	C	C	C	C	C	C	C	C
T0108___Seq		M	G	A	S	G	Q	Y	V	R	A		R	I	K	G	A	Y	Y	A	T	P		V	D	P	V	T	N	Q	P	T	A		P	K	D	F	S	S	G	F	W	D		F	N	D	G	T	T	Q	G	F	G
-------																						-			D	-	-	+	+	+								-			+					F	+	+	+	+	-	-	-	+	+
c1cx1a__Seq		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	A	S		L	D	S	E	V	E	L	.	.	.		.	.	.	L	P	H	T	.	.	S		F	A	E	S	L	G	P	W	S	L
c1cx1a__SS		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	C	C		C	C	C	C	C	C	C	.	.	.		.	.	.	C	C	C	C	.	.	C		C	C	C	C	C	C	C	C	E	E
CORE		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	0	0		0	0	0	0	0	0	1	.	.	.		.	.	.	0	0	0	0	.	.	0		3	0	0	0	2	0	0	2	0	4

T0108___PSS

C

C

C

C

C

C

C

C

E

E

E

E

E

C

C

C

C

C

C

E

E

E

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

E

E

E

E

E

C

C

C

C

C

C

C

T0108___Seq

V

N

P

D

S

P

I

T

A

I

N

V

E

N

A

N

N

A

L

K

I

S

N

L

N

S

K

G

S

N

D

L

S

E

G

N

F

W

A

N

V

R

I

S

A

D

I

W

G

Q

-------

+

+

P

+

+

+

+

+

+

+

L

+

+

N

+

W

+

+

-

+

c1cx1a__Seq

Y

G

T

S

E

P

.

.

.

.

V

F

A

D

.

.

G

R

M

C

V

D

.

L

P

G

G

Q

G

N

P

.

.

.

.

.

.

W

.

D

A

G

L

V

Y

N

.

.

.

.

c1cx1a__SS

E

C

C

C

C

C

.

.

.

.

E

E

C

C

.

.

C

C

E

E

E

E

.

C

C

C

C

C

C

C

C

.

.

.

.

.

.

C

.

C

C

E

E

E

E

C

.

.

.

.

CORE

0

0

2

1

0

1

.

.

.

.

0

1

0

0

.

.

0

0

4

0

2

0

.

2

0

0

0

0

0

0

0

.

.

.

.

.

.

0

.

0

2

3

6

0

0

0

.

.

.

.

T0108___PSS

C

C

C

C

C

.

E

E

E

.

E

E

E

E

E

E

E

E

C

C

C

C

E

E

E

E

E

E

C

C

C

C

C

C

C

C

C

C

C

C

C

C

E

E

E

E

E

C

C

C

T0108___Seq

S

I

N

I

Y

.

G

D

T

.

K

L

T

M

D

V

I

A

P

T

P

V

N

V

S

I

A

A

I

P

Q

S

S

T

H

G

W

G

N

P

T

R

A

R

I

V

W

T

N

N

-------

-

+

+

+

+

G

-

+

+

L

+

-

+

+

-

A

-

+

+

+

+

V

+

-

+

-

+

-

+

+

+

-

+

-

+

c1cx1a__Seq

G

V

P

V

G

E

G

E

S

Y

V

L

S

F

T

A

S

A

T

P

D

M

P

V

R

.

V

L

V

G

E

G

G

.

G

A

Y

R

T

.

.

A

F

E

Q

G

S

.

.

.

c1cx1a__SS

C

C

C

C

C

C

C

E

E

E

E

E

E

E

E

E

E

E

E

C

C

E

E

E

E

.

E

E

E

C

C

C

C

.

C

C

C

C

C

.

.

C

E

E

E

E

E

.

.

.

CORE

1

6

0

1

0

0

0

0

0

1

0

9

0

2

0

2

0

1

0

0

0

0

0

3

0

.

7

0

7

3

0

0

0

.

0

0

0

0

0

.

.

0

5

0

0

0

0

.

.

.

T0108___PSS

C

E

E

C

C

C

C

E

E

E

E

E

E

E

E

C

C

C

C

C

C

C

C

C

H

H

C

C

C

C

C

C

C

C

C

C

E

E

E

E

E

E

C

C

C

C

C

E

E

E

T0108___Seq

F

V

A

Q

T

D

G

T

Y

K

A

T

L

T

I

S

T

N

D

S

P

N

F

N

T

I

A

T

D

A

A

D

S

V

V

T

N

M

I

L

F

V

G

S

N

S

D

N

I

S

-------

+

-

-

+

+

+

+

-

+

-

+

+

-

+

N

-

-

-

+

+

D

-

-

-

+

-

-

-

+

+

-

-

-

-

+

-

c1cx1a__Seq

A

P

L

T

G

E

P

A

.

T

R

E

Y

A

F

.

.

.

.

.

.

T

S

N

L

T

F

P

P

D

G

D

A

P

G

Q

V

A

F

H

L

G

K

A

G

A

Y

E

F

C

c1cx1a__SS

E

E

E

C

C

C

C

E

.

E

E

E

E

E

E

.

.

.

.

.

.

E

E

C

C

C

C

C

C

C

C

C

C

C

C

C

E

E

E

E

C

C

C

C

C

C

C

E

E

E

CORE

4

0

2

0

0

0

0

0

.

0

0

0

2

0

3

.

.

.

.

.

.

0

1

0

0

0

0

0

0

0

0

0

0

0

2

0

6

0

6

0

3

1

0

0

0

1

0

0

3

0

T0108___PSS

E

C

C

E

E

E

C

C

.

.

.

T0108___Seq

L

D

N

I

K

F

T

K

.

.

.

-------

+

+

+

+

+

T

+

c1cx1a__Seq

I

S

Q

V

S

L

T

T

S

A

T

c1cx1a__SS

E

E

E

E

E

E

E

C

C

C

C

CORE

2

0

0

3

0

4

0

0

0

0

0