Alignment of T0108____ with c1ccza

Alignment of T0108____ with c1ccza

PSSM Score Key
-10																			10

Bad																			Good

T0108___PSS	Predicted Secondary Structure for your Sequence
T0108___Seq	Your Sequence
c1ccza__Seq	Library Sequence
c1ccza__SS	Known Secondary Structure of the Library Sequence (Assigned by STRIDE)
CORE	A measure of the burial and number of contacts made by a residue. (9 very buried/making many contacts, 0 not buried/making few contacts

T0108___PSS

C

C

C

C

C

E

E

E

E

E

E

E

C

C

C

E

E

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

E

E

E

E

E

C

C

C

C

C

C

C

C

C

C

T0108___Seq

M

G

A

S

G

Q

Y

V

R

A

R

I

K

G

A

Y

Y

A

T

P

V

D

P

V

T

N

Q

P

T

A

P

K

D

F

S

S

G

F

W

D

F

N

D

G

T

T

Q

G

F

G

-------

-

+

-

-

Y

+

+

-

-

+

+

V

T

-

-

+

+

+

-

W

-

+

+

+

-

+

c1ccza__Seq

.

.

.

.

.

.

.

.

.

.

.

F

S

Q

Q

I

Y

G

V

V

Y

G

N

V

T

F

H

V

P

S

N

V

P

L

K

E

V

L

W

K

K

Q

K

D

K

V

A

E

L

E

c1ccza__SS

.

.

.

.

.

.

.

.

.

.

.

C

E

E

E

E

E

E

E

C

C

C

C

E

E

E

C

C

C

C

C

C

C

C

C

C

E

E

E

E

E

C

C

E

E

E

E

E

E

E

CORE

.

.

.

.

.

.

.

.

.

.

.

0

0

0

0

3

0

3

0

0

0

0

0

5

0

4

0

3

0

0

0

0

0

2

0

0

4

0

3

0

0

0

0

0

0

5

9

0

3

0

T0108___PSS

C

C

C

C

C

C

C

.

.

.

.

C

E

E

E

E

E

C

C

C

C

C

C

E

E

E

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

E

E

E

E

E

C

C

C

T0108___Seq

V

N

P

D

S

P

I

.

.

.

.

T

A

I

N

V

E

N

A

N

N

A

L

K

I

S

N

L

N

S

K

G

S

N

D

L

S

E

G

N

F

W

A

N

V

R

I

S

A

D

-------

+

+

+

+

-

-

+

-

+

+

+

L

I

N

L

-

-

E

+

+

-

+

c1ccza__Seq

N

S

E

F

R

A

F

S

S

F

K

N

R

V

Y

L

D

T

V

S

G

S

L

T

I

Y

N

L

.

.

.

.

.

T

S

S

D

E

D

E

Y

E

M

E

S

.

.

.

.

.

c1ccza__SS

C

C

E

E

E

E

C

H

H

H

C

C

C

E

E

E

C

C

C

C

C

C

E

E

E

C

C

C

.

.

.

.

.

C

H

H

H

C

E

E

E

E

E

E

E

.

.

.

.

.

CORE

0

0

0

3

0

5

0

0

0

2

0

0

0

8

0

7

0

0

0

0

4

0

7

0

5

0

0

3

.

.

.

.

.

0

0

0

1

0

0

0

2

0

3

0

1

.

.

.

.

.

T0108___PSS

C

C

C

C

C

C

C

C

C

E

E

E

E

E

E

E

E

E

E

E

C

C

C

C

E

E

E

E

E

E

C

C

C

C

C

.

.

C

C

C

C

C

C

C

C

C

E

E

E

E

T0108___Seq

I

W

G

Q

S

I

N

I

Y

G

D

T

K

L

T

M

D

V

I

A

P

T

P

V

N

V

S

I

A

A

I

P

Q

S

S

.

.

T

H

G

W

G

N

P

T

R

A

R

I

V

-------

N

I

+

-

K

-

+

V

+

+

+

+

-

-

-

-

-

+

-

-

+

+

+

-

+

c1ccza__Seq

.

.

.

.

.

P

N

I

T

D

T

M

K

F

F

L

Y

V

L

E

M

V

S

K

P

M

I

Y

W

E

C

S

N

A

T

L

T

C

E

V

L

E

G

T

D

V

.

E

L

K

c1ccza__SS

.

.

.

.

.

C

C

E

E

E

E

E

E

E

E

E

E

E

E

C

C

C

C

C

C

E

E

E

E

E

C

C

C

C

E

E

E

E

E

C

C

C

C

C

C

C

.

E

E

E

CORE

.

.

.

.

.

0

0

1

0

0

0

1

0

2

0

6

0

2

1

0

0

4

1

0

3

0

2

0

0

0

0

0

0

0

0

2

0

3

0

5

0

0

1

0

0

4

.

0

5

0

T0108___PSS

E

C

.

C

C

C

E

E

C

C

C

C

E

E

E

E

E

E

E

E

C

C

C

C

C

C

C

C

C

H

H

C

C

C

C

C

C

C

C

C

C

E

E

E

E

E

E

C

C

C

T0108___Seq

W

T

.

N

N

F

V

A

Q

T

D

G

T

Y

K

A

T

L

T

I

S

T

N

D

S

P

N

F

N

T

I

A

T

D

A

A

D

S

V

V

T

N

M

I

L

F

V

G

S

N

-------

+

+

+

-

-

+

+

+

-

-

+

-

+

+

T

N

+

+

-

+

F

-

-

A

+

+

+

+

-

+

-

+

-

+

-

-

c1ccza__Seq

L

Y

Q

G

K

E

H

L

R

S

L

R

Q

K

T

M

S

Y

Q

.

W

T

N

L

R

A

P

F

K

C

K

A

V

N

R

V

S

Q

E

S

E

M

E

V

V

N

C

P

E

.

c1ccza__SS

E

E

E

C

C

E

E

E

E

E

E

C

C

C

E

E

E

E

E

.

C

C

C

C

C

C

C

E

E

E

E

E

E

E

C

C

E

E

E

E

E

E

E

C

C

C

C

C

C

.

CORE

3

0

0

0

0

0

0

1

0

0

0

0

0

0

0

2

0

0

0

.

0

0

0

0

0

0

0

2

0

4

0

6

0

0

0

1

1

0

0

0

0

0

0

0

1

0

0

0

0

.

T0108___PSS

C

C

E

E

E

E

C

C

E

E

E

C

C

T0108___Seq

S

D

N

I

S

L

D

N

I

K

F

T

K

-------

c1ccza__Seq

.

.

.

.

.

.

.

.

.

.

.

.

.

c1ccza__SS

.

.

.

.

.

.

.

.

.

.

.

.

.

CORE

.

.

.

.

.

.

.

.

.

.

.

.

.