Alignment of T0108____ with c1an3b

Alignment of T0108____ with c1an3b

PSSM Score Key
-10																			10

Bad																			Good

T0108___PSS	Predicted Secondary Structure for your Sequence
T0108___Seq	Your Sequence
c1an3b__Seq	Library Sequence
c1an3b__SS	Known Secondary Structure of the Library Sequence (Assigned by STRIDE)
CORE	A measure of the burial and number of contacts made by a residue. (9 very buried/making many contacts, 0 not buried/making few contacts

T0108___PSS		C	C	C	C	C	E	E	E	E	E		E	E	C	C	C	E	E	C	C	C		C	C	C	C	C	C	C	C	C	C		C	C	C	C	C	E	E	E	E	E		C	C	C	C	C	C	C	C	C	C
T0108___Seq		M	G	A	S	G	Q	Y	V	R	A		R	I	K	G	A	Y	Y	A	T	P		V	D	P	V	T	N	Q	P	T	A		P	K	D	F	S	S	G	F	W	D		F	N	D	G	T	T	Q	G	F	G
-------																									+	P	-	-	-		-	-			P	+	+	-	+	-	+	-	W									-	-	-	G
c1an3b__Seq		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	K	P	F	I	F	K	C	R	S		P	E	K	E	T	F	T	C	W	.		.	.	.	.	.	.	W	R	P	G
c1an3b__SS		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	C	C	C	C	C	E	E	E	C		C	C	C	C	C	E	E	E	E	.		.	.	.	.	.	.	C	C	C	C
CORE		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	0	0	0	2	0	0	3	0	2		0	0	0	0	0	3	0	4	0	.		.	.	.	.	.	.	0	0	0	0

T0108___PSS

C

C

C

C

C

C

C

C

.

E

E

E

E

E

C

C

C

C

C

C

E

E

E

C

C

C

C

C

C

C

C

C

C

C

.

.

.

.

.

.

C

C

C

C

C

.

.

.

.

E

T0108___Seq

V

N

P

D

S

P

I

T

.

A

I

N

V

E

N

A

N

N

A

L

K

I

S

N

L

N

S

K

G

S

N

D

L

S

.

.

.

.

.

.

E

G

N

F

W

.

.

.

.

A

-------

-

+

+

-

-

P

+

+

-

+

+

-

-

+

-

-

+

-

K

-

-

S

-

W

-

c1an3b__Seq

A

D

G

G

L

P

T

N

Y

T

L

T

Y

H

K

E

G

E

T

I

T

H

E

C

P

D

Y

K

T

G

G

P

N

S

C

Y

F

S

K

K

H

T

S

I

W

T

I

Y

I

I

c1an3b__SS

C

C

C

C

C

C

C

C

E

E

E

E

E

E

C

C

C

C

C

C

C

E

E

C

C

C

C

C

C

C

C

C

C

C

E

E

E

C

C

C

C

C

C

C

C

C

E

E

E

E

CORE

0

0

0

0

0

0

0

0

0

0

4

0

0

0

0

0

0

0

0

0

0

0

0

2

1

0

0

0

0

0

0

0

0

0

2

0

4

0

0

0

0

1

0

0

0

0

0

1

0

5

T0108___PSS

E

E

E

E

C

C

C

C

C

C

C

C

C

C

C

C

E

E

E

E

E

E

E

E

E

E

E

C

C

C

C

E

E

E

E

E

E

C

C

C

C

C

C

C

C

C

C

C

C

C

T0108___Seq

N

V

R

I

S

A

D

I

W

G

Q

S

I

N

I

Y

G

D

T

K

L

T

M

D

V

I

A

P

T

P

V

N

V

S

I

A

A

I

P

Q

S

S

T

H

G

W

G

N

P

T

-------

V

-

+

-

-

G

S

+

-

-

-

-

-

T

-

-

V

-

-

+

-

P

V

N

+

-

+

H

-

-

-

-

-

c1an3b__Seq

T

V

N

A

T

.

N

Q

M

G

S

S

V

S

D

P

R

Y

V

D

V

T

Y

I

V

E

P

D

P

P

V

N

L

T

L

E

V

.

.

.

.

.

K

H

P

E

D

R

K

P

c1an3b__SS

E

E

E

E

C

.

C

C

C

C

C

C

C

C

C

C

C

E

E

E

H

H

H

C

C

C

C

C

C

C

E

E

E

E

E

E

E

.

.

.

.

.

C

C

C

C

C

C

C

C

CORE

0

1

0

0

0

.

0

0

0

0

0

0

0

0

0

0

0

0

2

0

2

0

0

2

1

0

1

0

0

1

0

0

4

0

4

0

1

.

.

.

.

.

0

0

0

0

0

0

0

0

T0108___PSS

C

E

E

E

E

E

.

C

C

C

C

E

E

C

C

C

C

.

.

E

E

E

E

E

E

E

E

C

C

C

C

C

C

C

C

C

H

.

.

.

.

.

.

.

.

.

.

.

H

C

T0108___Seq

R

A

R

I

V

W

.

T

N

N

F

V

A

Q

T

D

G

.

.

T

Y

K

A

T

L

T

I

S

T

N

D

S

P

N

F

N

T

.

.

.

.

.

.

.

.

.

.

.

I

A

-------

-

-

-

-

W

+

-

V

-

-

G

T

-

-

+

-

+

-

+

+

-

+

-

+

T

+

c1an3b__Seq

Y

L

W

V

K

W

L

P

P

T

L

V

D

V

R

S

G

W

L

T

L

Q

Y

E

I

R

L

K

P

E

K

A

A

E

W

E

T

H

F

A

G

Q

Q

T

Q

F

K

I

L

S

c1an3b__SS

C

E

E

E

E

E

E

C

C

C

C

C

C

C

C

C

C

C

C

C

C

E

E

E

E

E

E

E

E

C

C

C

C

C

C

E

E

C

C

C

C

C

C

C

E

E

E

E

C

C

CORE

0

4

0

9

0

1

0

0

0

0

0

1

0

1

0

0

0

0

1

0

1

0

1

0

7

0

4

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

1

0

6

0

0

T0108___PSS

C

C

C

C

C

C

C

C

C

E

E

E

E

E

.

.

.

.

.

.

.

E

C

C

C

C

C

E

E

E

E

C

C

E

E

E

C

C

T0108___Seq

T

D

A

A

D

S

V

V

T

N

M

I

L

F

.

.

.

.

.

.

.

V

G

S

N

S

D

N

I

S

L

D

N

I

K

F

T

K

-------

-

-

+

-

-

+

-

+

-

-

-

V

-

S

-

-

-

I

+

-

N

c1an3b__Seq

L

Y

P

G

Q

K

Y

L

V

Q

V

R

C

K

P

D

H

G

F

W

S

V

W

S

P

E

S

S

I

Q

I

P

N

.

.

.

.

.

c1an3b__SS

C

C

C

C

C

C

E

E

E

E

E

E

E

E

C

C

C

C

C

C

C

E

E

C

C

C

E

E

E

C

C

C

C

.

.

.

.

.

CORE

3

0

0

0

0

0

1

0

8

0

6

0

1

0

1

0

0

0

0

0

0

0

0

2

0

0

3

0

6

0

0

0

0

.

.

.

.

.