Alignment of T0108____ with c1ajoa

Alignment of T0108____ with c1ajoa

PSSM Score Key
-10																			10

Bad																			Good

T0108___PSS	Predicted Secondary Structure for your Sequence
T0108___Seq	Your Sequence
c1ajoa__Seq	Library Sequence
c1ajoa__SS	Known Secondary Structure of the Library Sequence (Assigned by STRIDE)
CORE	A measure of the burial and number of contacts made by a residue. (9 very buried/making many contacts, 0 not buried/making few contacts

T0108___PSS

.

.

.

.

.

.

.

.

.

.

.

C

C

C

C

C

E

.

.

.

.

.

.

.

.

.

E

E

E

E

E

E

C

C

C

E

E

C

C

C

C

C

C

C

C

C

C

C

C

C

T0108___Seq

.

.

.

.

.

.

.

.

.

.

.

M

G

A

S

G

Q

.

.

.

.

.

.

.

.

.

Y

V

R

A

R

I

K

G

A

Y

Y

A

T

P

V

D

P

V

T

N

Q

P

T

A

-------

-

+

-

-

Y

+

+

-

-

+

-

G

+

-

-

T

-

+

N

-

P

+

-

c1ajoa__Seq

G

H

E

K

V

I

S

L

G

F

D

A

S

K

G

F

H

T

Y

A

F

D

W

Q

P

G

Y

I

K

W

Y

V

D

G

V

L

K

H

T

.

.

.

A

T

A

N

I

P

S

T

c1ajoa__SS

C

C

C

E

E

E

E

C

C

C

C

C

C

C

C

C

E

E

E

E

E

E

E

E

C

C

E

E

E

E

E

E

C

C

E

E

E

E

E

.

.

.

E

C

C

C

C

C

C

C

CORE

0

0

0

0

0

1

0

2

0

0

0

2

0

0

0

0

0

0

1

0

2

0

0

0

0

0

0

2

0

0

0

2

0

0

0

0

0

0

0

.

.

.

1

0

0

0

0

1

0

0

T0108___PSS

C

C

C

C

C

E

E

E

E

E

C

C

C

C

C

C

C

C

C

C

.

C

C

C

C

C

C

C

C

E

.

.

.

.

E

E

E

.

E

C

C

C

C

C

C

E

E

E

C

C

T0108___Seq

P

K

D

F

S

S

G

F

W

D

F

N

D

G

T

T

Q

G

F

G

.

V

N

P

D

S

P

I

T

A

.

.

.

.

I

N

V

.

E

N

A

N

N

A

L

K

I

S

N

L

-------

P

-

+

-

-

+

+

W

-

G

-

-

G

N

+

-

P

+

-

A

+

-

-

+

N

+

-

-

+

-

c1ajoa__Seq

P

G

K

I

M

M

N

L

W

N

.

G

T

G

V

D

D

W

L

G

S

Y

N

G

A

N

P

L

Y

A

E

Y

D

W

V

K

Y

T

S

N

Q

T

G

G

S

F

F

E

P

F

c1ajoa__SS

C

E

E

E

E

E

E

E

E

E

.

C

C

C

C

H

H

H

H

C

C

C

C

C

C

C

C

E

E

E

E

E

E

E

E

E

E

E

E

C

C

C

C

C

C

E

E

E

C

C

CORE

0

1

0

4

0

5

0

8

0

1

.

0

0

0

0

0

0

0

0

0

0

1

0

0

0

0

0

4

0

9

0

2

0

0

6

0

0

0

0

0

0

0

0

0

0

2

0

0

0

3

T0108___PSS

C

C

C

C

C

C

C

C

C

C

C

C

C

C

E

E

E

E

E

C

C

C

C

C

C

.

C

C

C

C

C

C

E

E

E

E

E

E

E

E

E

E

E

C

C

C

C

E

E

E

T0108___Seq

N

S

K

G

S

N

D

L

S

E

G

N

F

W

A

N

V

R

I

S

A

D

I

W

G

.

Q

S

I

N

I

Y

G

D

T

K

L

T

M

D

V

I

A

P

T

P

V

N

V

S

-------

N

S

-

+

S

-

-

+

+

-

+

+

N

-

-

+

-

-

-

-

W

-

+

+

+

N

-

D

-

K

L

-

+

-

-

-

-

-

-

c1ajoa__Seq

N

S

Y

N

S

G

T

W

E

K

A

D

G

Y

S

N

G

G

V

F

N

C

T

W

R

A

N

N

V

N

F

T

N

D

G

K

L

K

L

G

L

T

S

S

A

Y

N

K

F

D

c1ajoa__SS

C

C

C

C

C

C

C

E

E

E

C

C

C

C

C

C

C

C

C

C

C

C

E

E

C

H

H

H

E

E

E

E

C

C

C

E

E

E

E

E

E

E

E

E

E

C

C

E

E

E

CORE

0

0

0

0

0

0

0

1

0

0

0

0

0

0

0

0

0

0

0

0

0

2

0

0

0

0

0

0

3

0

1

0

0

0

0

0

3

0

6

2

5

0

0

0

0

0

0

0

1

0

T0108___PSS

E

E

E

C

C

C

C

C

C

C

C

C

C

C

C

C

C

E

E

E

E

E

C

C

C

C

E

E

C

C

C

C

E

E

E

E

E

E

E

E

C

C

C

C

C

C

C

C

C

H

T0108___Seq

I

A

A

I

P

Q

S

S

T

H

G

W

G

N

P

T

R

A

R

I

V

W

T

N

N

F

V

A

Q

T

D

G

T

Y

K

A

T

L

T

I

S

T

N

D

S

P

N

F

N

T

-------

-

A

-

-

-

-

G

+

G

-

-

-

+

+

+

+

-

G

-

-

-

T

-

+

+

c1ajoa__Seq

C

A

E

Y

R

S

T

N

I

Y

G

Y

G

.

.

L

Y

E

V

S

M

K

P

A

K

.

.

.

.

N

T

G

I

V

S

S

F

F

T

Y

T

G

.

.

.

.

.

.

.

.

c1ajoa__SS

E

E

E

E

E

E

E

E

E

E

C

C

E

.

.

E

E

E

E

E

E

E

C

C

C

.

.

.

.

C

C

C

E

E

E

E

E

E

E

E

E

C

.

.

.

.

.

.

.

.

CORE

2

3

0

1

0

1

0

0

0

0

0

0

0

.

.

0

1

0

4

0

3

0

1

9

0

.

.

.

.

0

0

0

6

0

7

0

5

0

2

0

0

0

.

.

.

.

.

.

.

.

T0108___PSS

H

C

C

C

C

C

C

C

C

C

C

E

E

.

E

E

E

E

C

C

C

C

C

E

E

E

E

C

C

E

E

E

C

C

T0108___Seq

I

A

T

D

A

A

D

S

V

V

T

N

M

.

I

L

F

V

G

S

N

S

D

N

I

S

L

D

N

I

K

F

T

K

-------

-

A

+

-

+

I

-

F

G

-

+

+

-

-

+

N

-

-

-

c1ajoa__Seq

.

.

.

P

A

H

G

T

Q

W

D

E

I

D

I

E

F

L

G

K

D

T

T

K

V

Q

F

.

N

Y

Y

T

N

G

c1ajoa__SS

.

.

.

H

H

H

C

C

C

C

E

E

E

E

E

E

E

E

C

C

C

C

C

E

E

E

E

.

E

E

E

C

C

C

CORE

.

.

.

0

0

0

0

0

0

0

0

0

2

0

4

0

3

0

1

0

0

0

0

0

3

0

1

.

0

0

0

0

0

0