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Jump to SCOP summary stats for T0101...

Top superfamilies by number of methods finding them in first 20 hits found

Top families by number of methods finding them in first 20 hits found

Top superfamilies by sum(1/ranks) in first 20 hits found

Top families by sum(1/ranks) in first 20 hits found

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SCOP-ified results from servers

pdg

phd

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
190K unknown  

seq

123d

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
d1dbga_ 1.002.075.001 Pectin lyase-like
d1a0tp_ 1.006.004.003 Porins
d1bhe__ 1.002.075.001 Pectin lyase-like
d1czfa_ 1.002.075.001 Pectin lyase-like
d1a8d_2 1.002.040.004 STI-like
d1air__ 1.002.075.001 Pectin lyase-like
d3btaa1 1.002.028.001 ConA-like lectins/glucanases
d1kapp1 1.002.074.001 Metalloprotease, C-terminal domain
d1rmg__ 1.002.075.001 Pectin lyase-like
d3btaa2 1.002.040.004 STI-like
d1a8d_1 1.002.028.001 ConA-like lectins/glucanases
d1qcxa_ 1.002.075.001 Pectin lyase-like
d3prn__ 1.006.004.003 Porins
d2por__ 1.006.004.003 Porins
d1qq4a_ 1.002.044.001 Trypsin-like serine proteases
d7ahla_ 1.006.005.001 Leukocidin (pore-forming toxin)
d1qlza_ 1.004.006.001 Prion protein domain
d1bn8a_ 1.002.075.001 Pectin lyase-like
d1dlpa_ 1.002.073.001 alpha-D-mannose-specific plant lectins
d2tbva_ 1.002.009.001 Viral coat and capsid proteins

fams

ffas

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
1dbgA 1.002.075.001 Pectin lyase-like
1ei3A unknown  
3btaA 1.002.028.001 1.002.040.004 1.004.076.001 1.008.003.002  
1cwvA 1.002.001.013 1.004.147.001  
1afoA 1.010.035.001 Transmembrane helical fragments
1btq_ 1.010.035.001 Transmembrane helical fragments
1ihsI unknown  
1sh1_ 1.007.009.001 Defensin-like
1acc_ 1.006.010.001 Anthrax protective antigen
1emzA unknown  
1plp_ 1.010.037.001 Phospholamban, cytoplasmic domain residues 1-25
1bb9_ 1.002.032.002 SH3-domain
1dsqA 1.007.038.001 Retrovirus zinc finger-like domains
2ifo_ 1.008.001.004 Inovirus (filamentous phage) major coat protein
487dN unknown  
1qa5A 1.010.052.001 HIV-1 Nef protein fragments
1a6bB 1.007.038.001 Retrovirus zinc finger-like domains
1qcxA 1.002.075.001 Pectin lyase-like
1bh7_ 1.010.035.001 Transmembrane helical fragments
1qgc5 1.009.005.001 Virus-receptor complexes

rpfold

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
1XIA unknown  
2PGK 1.009.008.001 Proteins of incorrect, partial and unknown sequence
1AXK 1.002.028.001 ConA-like lectins/glucanases
1OYB 1.003.001.004 FMN-linked oxidoreductases
1A0T 1.006.004.003 Porins

pmap

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
1AMX 1.002.002.003 Bacterial adhesins
1BN8 1.002.075.001 Pectin lyase-like
2BSP 1.002.075.001 Pectin lyase-like
1DLL unknown  
1DFQ unknown  

prof

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
137LI unknown  

pssp

jpred2

prof2

nanoworld

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
26c547 unknown  
9EDB5 unknown  

samt98

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
1rmg 1.002.075.001 Pectin lyase-like
2pec 1.002.075.001 Pectin lyase-like
3fib 1.004.149.001 Fibrinogen C-terminal domains
1air 1.002.075.001 Pectin lyase-like
1tyv 1.002.075.001 Pectin lyase-like
1fib 1.004.149.001 Fibrinogen C-terminal domains
1aozA 1.002.005.001 Cupredoxins
1tsp 1.002.075.001 Pectin lyase-like
1idk 1.002.075.001 Pectin lyase-like
2glsA 1.004.013.009 1.004.107.001  
1ajsA 1.003.062.001 PLP-dependent transferases
1hyhA 1.003.002.001 1.004.140.001  
1agx 1.003.083.001 Glutaminase/Asparaginase
2lgsA 1.004.013.009 1.004.107.001  
1dosA 1.003.001.009 Aldolase
1fzaB 1.004.149.001 1.008.001.008  
2gsaA 1.003.062.001 PLP-dependent transferases
1qbeA 1.004.070.001 RNA bacteriophage capsid protein
1preA 1.004.147.001 1.006.007.001  
1lepA 1.002.033.001 GroES-like

foresst

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
1air 1.002.075.001 Pectin lyase-like
1rmg_1 unknown  
1tsp_1 unknown  
1tsp 1.002.075.001 Pectin lyase-like

pdbblast

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
3bta_A 1.002.028.001 1.002.040.004 1.004.076.001 1.008.003.002  
1a8d_ 1.002.028.001 1.002.040.004  
1af9_ 1.002.028.001 1.002.040.004  
1d0h_A unknown  
1amx_ 1.002.002.003 Bacterial adhesins
1ioa_B 1.002.028.001 ConA-like lectins/glucanases
1ioa_A 1.002.028.001 ConA-like lectins/glucanases
3lkf_A 1.006.005.001 Leukocidin (pore-forming toxin)
1lkf_A 1.006.005.001 Leukocidin (pore-forming toxin)

sdsc1

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
1dbg_A 1.002.075.001 Pectin lyase-like

sspro

sspsi

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
d2cas__ 1.002.009.001 Viral coat and capsid proteins
d1tyu__ 1.002.075.001 Pectin lyase-like
d4aaha_ 1.002.065.001 Methanol dehydrogenase, heavy chain
d1rmg__ 1.002.075.001 Pectin lyase-like
d1gof_3 1.002.064.001 Galactose oxidase, central domain
d1idja_ 1.002.075.001 Pectin lyase-like
d1a14n_ 1.002.063.001 Sialidases (neuraminidases)
d1air__ 1.002.075.001 Pectin lyase-like
d1nira2 1.002.065.002 C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
d1ksia1 1.002.029.002 Copper amine oxidase, domain 3 (catalytic)

pred2ary

sausage

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
2glsD 1.004.013.009 1.004.107.001  
1a12A 1.002.064.004 Regulator of chromosome condensation RCC1
2qwc_ 1.002.063.001 Sialidases (neuraminidases)
1qq4A 1.002.044.001 Trypsin-like serine proteases
1jfrA 1.003.064.001 alpha/beta-Hydrolases
1gpl_ 1.002.011.001 1.003.064.001  
1xgsA 1.001.004.004 1.004.106.001  
1efvA 1.003.023.001 1.003.026.001  
1air_ 1.002.075.001 Pectin lyase-like
1tttB 1.002.041.003 1.002.042.001 1.003.031.001  
1bruP 1.002.044.001 Trypsin-like serine proteases
1imbA 1.005.007.001 Sugar phosphatases
1gdoA 1.004.132.001 N-terminal nucleophile aminohydrolases (Ntn hydrolases)
1gof_ 1.002.001.001 1.002.017.001 1.002.064.001  
1b3rA 1.003.002.001 1.003.016.011  
1az9_ 1.004.106.001 Creatinase/aminopeptidase
3bccB 1.004.111.001 Mitochondrial processing peptidase, MPP
1k89_ 1.003.002.001 1.003.053.001  
1qksA 1.001.003.001 1.002.065.002  
1b8aA 1.002.038.004 1.004.087.001  

fugue

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
132Fq unknown  
d1tyu 1.002.075.001 Pectin lyase-like
d1tf4a2 1.002.002.002 Carbohydrate-binding domain
1dbg_A 1.002.075.001 Pectin lyase-like
1rmg 1.002.075.001 Pectin lyase-like
1bhe 1.002.075.001 Pectin lyase-like
1b7b_A 1.003.068.001 Carbamate kinase
2pec 1.002.075.001 Pectin lyase-like
2bspa 1.002.075.001 Pectin lyase-like
1idk 1.002.075.001 Pectin lyase-like
1qcxa 1.002.075.001 Pectin lyase-like
1tyu 1.002.075.001 Pectin lyase-like
1czf_A 1.002.075.001 Pectin lyase-like
1dab_A 1.002.075.001 Pectin lyase-like
1qbea 1.004.070.001 RNA bacteriophage capsid protein
1unaa 1.004.070.001 RNA bacteriophage capsid protein
1msc 1.004.070.001 RNA bacteriophage capsid protein
1frsa 1.004.070.001 RNA bacteriophage capsid protein
1qbe_A 1.004.070.001 RNA bacteriophage capsid protein
1tf4_A 1.001.097.001 1.002.002.002  

target99

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
1dbgA 1.002.075.001 Pectin lyase-like
1dboA 1.002.075.001 Pectin lyase-like
1rmg 1.002.075.001 Pectin lyase-like
1air 1.002.075.001 Pectin lyase-like
1pluA 1.002.075.001 Pectin lyase-like
2pec 1.002.075.001 Pectin lyase-like
1a8q 1.003.064.001 alpha/beta-Hydrolases
1fepA 1.006.004.003 Porins
1iivA unknown  
1iivB unknown  
1iivC unknown  
1bhe 1.002.075.001 Pectin lyase-like
1a5aA 1.003.001.002 Ribulose-phoshate binding barrel
1a5bA 1.003.001.002 Ribulose-phoshate binding barrel
1beuA 1.003.001.002 Ribulose-phoshate binding barrel
1a50A 1.003.001.002 Ribulose-phoshate binding barrel
1a5sA 1.003.001.002 Ribulose-phoshate binding barrel
1bksA 1.003.001.002 Ribulose-phoshate binding barrel
1c29A 1.003.001.002 Ribulose-phoshate binding barrel
1c8vA 1.003.001.002 Ribulose-phoshate binding barrel

jigsaw

inbgu

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
1dbg 1.002.075.001 Pectin lyase-like
1dnv 1.002.009.001 Viral coat and capsid proteins
1gof_1 unknown  
2cas 1.002.009.001 Viral coat and capsid proteins
1mcoh 1.002.001.001 Immunoglobulin
1gof 1.002.001.001 1.002.017.001 1.002.064.001  
1tmf1 1.002.009.001 Viral coat and capsid proteins
1cgt_1 unknown  
1srp 1.002.074.001 1.004.076.001  
1pyp 1.002.038.005 Inorganic pyrophosphatase
1mypc unknown  
1bhe 1.002.075.001 Pectin lyase-like
1rmg 1.002.075.001 Pectin lyase-like
1a8x unknown  
1aoza 1.002.005.001 Cupredoxins
1hgea 1.002.018.001 Segmented RNA-genome viruses' proteins
1eg1a 1.002.028.001 ConA-like lectins/glucanases
1ck7 1.002.061.001 1.004.076.001 1.007.014.001  
3aaha unknown  
1mdah 1.002.064.002 Methylamine dehydrogenase, H-chain

psipred

isites2

threadwithseq

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
1eur 1.002.063.001 Sialidases (neuraminidases)
1iow 1.003.025.001 1.004.121.001  
1gotB 1.002.064.003 Trp-Asp repeat (WD-repeat)
2apr 1.002.047.001 Acid proteases
1f13A 1.002.001.001 1.002.001.005 1.004.003.001  
1eagA 1.002.047.001 Acid proteases
1smeA 1.002.047.001 Acid proteases
1bec 1.002.001.001 Immunoglobulin

genthreader

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
1dbgA 1.002.075.001 Pectin lyase-like
1rmg0 1.002.075.001 Pectin lyase-like
1dabA 1.002.075.001 Pectin lyase-like
1qcxA 1.002.075.001 Pectin lyase-like
1cwvA 1.002.001.013 1.004.147.001  
1bhe0 1.002.075.001 Pectin lyase-like
1czfA 1.002.075.001 Pectin lyase-like
1by5A 1.006.004.003 Porins
1qbeA 1.004.070.001 RNA bacteriophage capsid protein
1air0 1.002.075.001 Pectin lyase-like

mgenthreader

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
1czfA 1.002.075.001 Pectin lyase-like
1dbgA 1.002.075.001 Pectin lyase-like
1rmg0 1.002.075.001 Pectin lyase-like
1bhe0 1.002.075.001 Pectin lyase-like
1cwvA 1.002.001.013 1.004.147.001  
1dabA 1.002.075.001 Pectin lyase-like
1qcxA 1.002.075.001 Pectin lyase-like
1bn8A 1.002.075.001 Pectin lyase-like
1air0 1.002.075.001 Pectin lyase-like
1pcl0 1.002.075.001 Pectin lyase-like

3dpssm

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
d1dbga_ 1.002.075.001 Pectin lyase-like
d1pcl__ 1.002.075.001 Pectin lyase-like
d1air__ 1.002.075.001 Pectin lyase-like
d1czfa_ 1.002.075.001 Pectin lyase-like
d1idk__ 1.002.075.001 Pectin lyase-like
d1bhe__ 1.002.075.001 Pectin lyase-like
d1dnv__ 1.002.009.001 Viral coat and capsid proteins
d1sat_1 1.002.074.001 Metalloprotease, C-terminal domain
c1dgir_ 1.009.005.001 Virus-receptor complexes
d1qcxa_ 1.002.075.001 Pectin lyase-like
d1kapp1 1.002.074.001 Metalloprotease, C-terminal domain
d1rmg__ 1.002.075.001 Pectin lyase-like
d1cq1a_ 1.002.063.002 Soluble quinoprotein glucose dehydrogenase
d1tmf2_ 1.002.009.001 Viral coat and capsid proteins
c1inma_ 1.002.001.013 1.004.147.001  
d1elt__ 1.002.044.001 Trypsin-like serine proteases
c1smpa_ 1.002.057.002 1.002.074.001 1.004.076.001  
d2qwc__ 1.002.063.001 Sialidases (neuraminidases)
d1eg1a_ 1.002.028.001 ConA-like lectins/glucanases
c1cpm__ 1.002.028.001 ConA-like lectins/glucanases

loopp

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
1cf1_A 1.002.001.001 Immunoglobulin
1crkA 1.001.079.001 1.004.107.001  
1psd_A 1.003.002.001 1.003.016.011 1.004.048.017  
1ivh_A 1.001.025.006 1.005.006.001  
4kbpA 1.002.001.011 1.004.138.001  
1kev_A 1.002.033.001 1.003.002.001  
1frvB 1.005.015.001 Nickel-iron hydrogenase, large subunit
4pga_A 1.003.083.001 Glutaminase/Asparaginase
1fcdA 1.003.003.001 1.004.072.001  
1a12_A 1.002.064.004 Regulator of chromosome condensation RCC1
1fnf 1.002.001.002 Fibronectin type III
1nlh unknown  
4prc_C 1.001.127.001 Multiheme cytochromes
2ncd_A 1.003.031.001 P-loop containing nucleotide triphosphate hydrolases
4thi 1.003.089.001 Periplasmic binding protein-like II
1a7k_A 1.003.002.001 1.004.066.001  
1lbh_A 1.003.088.001 Periplasmic binding protein-like I
3gly 1.001.097.001 Six-hairpin glycosyltransferases
1gai 1.001.097.001 Six-hairpin glycosyltransferases
2cyp 1.001.089.001 Heme-dependent peroxidases

cornet

SCOP summary statistics for T0101  

Top superfamilies by number of methods finding them in first 20 hits found  

Superfamily      number of methods    methods
1.002.075.001 14 123d 3dpssm ffas foresst fugue genthreader inbgu mgenthreader pmap samt98 sausage sdsc1 sspsi target99
1.002.028.001 6 123d 3dpssm ffas inbgu pdbblast rpfold
1.004.147.001 5 3dpssm ffas genthreader mgenthreader samt98
1.002.063.001 4 3dpssm sausage sspsi threadwithseq
1.006.004.003 4 123d genthreader rpfold target99
1.002.001.013 4 3dpssm ffas genthreader mgenthreader
1.004.076.001 4 3dpssm ffas inbgu pdbblast
1.002.001.001 4 inbgu loopp sausage threadwithseq
1.002.009.001 4 123d 3dpssm inbgu sspsi
1.002.064.001 3 inbgu sausage sspsi
1.002.044.001 3 123d 3dpssm sausage
1.003.002.001 3 loopp samt98 sausage
1.004.070.001 3 fugue genthreader samt98
1.004.107.001 3 loopp samt98 sausage
1.002.074.001 3 123d 3dpssm inbgu
1.002.040.004 3 123d ffas pdbblast
1.002.002.003 2 pdbblast pmap
1.003.031.001 2 loopp sausage
1.002.033.001 2 loopp samt98
1.006.005.001 2 123d pdbblast

Top families by number of methods finding them in first 20 hits found  

Family                               number of methods    methods
1.002.075.001.001 11 123d 3dpssm foresst fugue genthreader mgenthreader pmap samt98 sausage sspsi target99
1.002.075.001.006 9 123d 3dpssm ffas fugue genthreader inbgu mgenthreader sdsc1 target99
1.002.075.001.004 9 123d 3dpssm fugue genthreader inbgu mgenthreader samt98 sspsi target99
1.002.075.001.002 8 123d 3dpssm ffas fugue genthreader mgenthreader samt98 sspsi
1.002.075.001.003 4 foresst fugue samt98 sspsi
1.002.001.001.005 4 inbgu loopp sausage threadwithseq
1.002.001.013.001 4 3dpssm ffas genthreader mgenthreader
1.002.063.001.001 4 3dpssm sausage sspsi threadwithseq
1.004.147.001.003 4 3dpssm ffas genthreader mgenthreader
1.002.075.001.005 3 fugue genthreader mgenthreader
1.002.009.001.004 3 3dpssm inbgu sspsi
1.002.040.004.002 3 123d ffas pdbblast
1.002.074.001.001 3 123d 3dpssm inbgu
1.002.064.001.001 3 inbgu sausage sspsi
1.002.028.001.006 3 123d ffas pdbblast
1.004.070.001.001 3 fugue genthreader samt98
1.006.004.003.002 2 123d rpfold
1.002.002.003.001 2 pdbblast pmap
1.002.044.001.002 2 3dpssm sausage
1.002.005.001.003 2 inbgu samt98

Top superfamilies by sum(1/ranks) in first 20 hits found  

Superfamily      sum(1/ranks)    methods
1.002.075.001 24 123d 3dpssm ffas foresst fugue genthreader inbgu mgenthreader pmap samt98 sausage sdsc1 sspsi target99
1.002.028.001 3.6 123d 3dpssm ffas inbgu pdbblast rpfold
1.002.040.004 2.6 123d ffas pdbblast
1.002.009.001 2.3 123d 3dpssm inbgu sspsi
1.002.001.001 1.8 inbgu loopp sausage threadwithseq
1.004.076.001 1.8 3dpssm ffas inbgu pdbblast
1.004.107.001 1.7 loopp samt98 sausage
1.002.063.001 1.5 3dpssm sausage sspsi threadwithseq
1.008.003.002 1.5 ffas pdbblast
1.002.002.003 1.2 pdbblast pmap
1.004.013.009 1.2 samt98 sausage
1.006.004.003 1.1 123d genthreader rpfold target99
1.009.008.001 1 rpfold
1.004.147.001 0.85 3dpssm ffas genthreader mgenthreader samt98
1.002.001.013 0.8 3dpssm ffas genthreader mgenthreader
1.003.002.001 0.77 loopp samt98 sausage
1.003.001.002 0.61 target99
1.002.064.004 0.6 loopp sausage
1.004.149.001 0.56 samt98
1.002.047.001 0.56 threadwithseq

Top families by sum(1/ranks) in first 20 hits found  

Family                               sum(1/ranks)    methods
1.002.075.001.006 8.3 123d 3dpssm ffas fugue genthreader inbgu mgenthreader sdsc1 target99
1.002.075.001.004 6 123d 3dpssm fugue genthreader inbgu mgenthreader samt98 sspsi target99
1.002.075.001.001 5.2 123d 3dpssm foresst fugue genthreader mgenthreader pmap samt98 sausage sspsi target99
1.002.040.004.002 2.6 123d ffas pdbblast
1.002.028.001.006 2.6 123d ffas pdbblast
1.002.075.001.003 2.4 foresst fugue samt98 sspsi
1.002.009.001.004 1.6 3dpssm inbgu sspsi
1.002.063.001.001 1.5 3dpssm sausage sspsi threadwithseq
1.004.076.001.005 1.5 ffas pdbblast
1.008.003.002.001 1.5 ffas pdbblast
1.002.001.001.005 1.5 inbgu loopp sausage threadwithseq
1.002.075.001.002 1.3 123d 3dpssm ffas fugue genthreader mgenthreader samt98 sspsi
1.002.002.003.001 1.2 pdbblast pmap
1.004.107.001.001 1.2 samt98 sausage
1.004.013.009.001 1.2 samt98 sausage
1.009.008.001.001 1 rpfold
1.004.147.001.003 0.8 3dpssm ffas genthreader mgenthreader
1.002.001.013.001 0.8 3dpssm ffas genthreader mgenthreader
1.006.004.003.002 0.75 123d rpfold
1.002.009.001.003 0.64 3dpssm inbgu
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